Citrus Sinensis ID: 004468

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-
Protein Sequence
MENFPFHDGSIYDMLDTRHTDTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGEVATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHIAAAETEKNNKANDGGARSEPRTGRVLSLSDIIYRSEANSDASQDGPRSEREDSDYDEEVEVDFHTSVPGDEGRDVEANFLHGSLNVRIHRRGDSARETVDANGSSGSPSSSSQNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSIVSGGAAGPDTADVLEAMESNQRKLSRNREHSLSYELLERFHMHEFSEGSLRPFECAQS
Secondary Structure (PSIPRED)
cccccccccccEEEEEcccccccccccccEEEEcccccccccccccccccccEEEEEEcccccEEEEEcccccEEEEcccccEEEEEccccccccEEEEEEEccccccEEEEEEccccEEEEEccccccccccccccccccccccccccEEEEEEEccccEEEEEEEccccEEEEEcccccccccccccccccEEEEEEccccccEEEccccccEEEEEEEEEEcccccEEEEEEccccEEEEccccccccccccccccccccEEEEccccccccccccccEEEEEEcccccEEEEEEccccEEEEEccccccccccccccccccEEEEcccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccccccccccccccccccccccccEEEccccccccEEEEEEEcccccEEEEccccccEEEEEcccEEEEEEEcccccEEEEEcccccEEEEccccccccccccccccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccEEEEccccccEEEccccccEEEcHHHHHHHHHHHHcccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEcccccccEEEEEEcccccccEEEEEccccEEEEEEcccccEEEcccccccEEEEEEcccccEEEEEEcccccEEEEEEccccEEEEEEcccccccccccccccEEEEEEEccccccEEEEEEccccEEEEEEEEEccccccEEEEEccccEEEEEEccccccccccccccccccccEEEccccccccccccEEEEEEEEcccccEEEEEccccEEEEEEccccccccccccccEEEEcccccccccEEEEccccccEEEcccccccccHHHcccccccHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHccccccccccccccccccEEEHHHHHcccccccccccccccccccccccccHcccccccccccccccccccccccccccEEEEEcccccccccccccccccEEEEcccccccccccccccccEEEEcccccccccEEEEEEcccccEEEEEccccEEEEEEccEEEEcccccccccEEEEccccccEEEEcccccccccccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccccccEEccc
Coil and Loop (DISEMBL)
menfpfhdgsiydmldtrhtdtrpdvnhsLQMHSSLVRRLSQereleghqgcvnaiswnskgsllisgsddthinvWSYSSRKLLHSIetghsanvfctkfvpetsdelvvsgagdaEVRLFNlsrfsgrglddnaitpsalyqcHTRRVKKLAVEvgnphvvwsasedgtlrqhdfrqgsscppagsshqECRNILLDLrcgakrsladppkqtlslkscdisstrphlllvggsdafarlydrrmlppltscqkrmspppcvnyfcpmhlsehgrsslhlthvtfspngEEVLLSYSGEHVYLMDVnhaggramrytvgdaskimsftptlnglelqppihdflQTNIRVRGEVATGLGKCRMLVEIARNsleegkhpyygieaCNEVLEghlsgigpmlRHECLCIRAALLLKRKWKNDAQMAIRDCynarridsssfRAHLYMSEALEQLCKYKEALDFAIAAqcldpsnsvmAEKVENIKKHIAAAEteknnkandggarseprtgrvlsLSDIIYrseansdasqdgprseredsdydeevevdfhtsvpgdegrdveanflhgslnvrihrrgdsaretvdangssgspssssqndripyqpetVIDMKQRYVGhcnvgtdikqasflgqrgdyiasgsddgrwfiWEKQTvvncvqchpfdcvvatsgidntikiwtpsasvpsivsggaagpdTADVLEAMESNQRKLSRNREHSLSYELLERFhmhefsegslrpfecaqs
Flexible Loop (DISEMBL)
menfpfhdgsiydMLDTRHTDTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSrfsgrglddnaitpsalyqCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRsladppkqtlslkscdisstrphLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGEVATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHIAaaeteknnkandggarseprtgrVLSLSDIIYrseansdasqdgprseredsdydeevEVDFHtsvpgdegrdvEANFLHGSLNVRIHRRGDSAREtvdangssgspssssqndriPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSIVSGGAAGPDTADVLEAMEsnqrklsrnreHSLSYELLERFHMhefsegslrpfecaqs
Low Complexity Region (SEG)
MENFPFHDGSIYDMLDTRHTDTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGEVATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHIaaaeteknnkanDGGARSEPRTGRVLSLSDIIYRSEANSDASQDGPrseredsdydeevevdFHTSVPGDEGRDVEANFLHGSLNVRIHRRGDSARETVDANgssgspssssQNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSIVSGGAAGPDTADVLEAMESNQRKLSRNREHSLSYELLERFHMHEFSEGSLRPFECAQS
Disordered region (IsUnstruct)
************************************************HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSA**************************CRNILLDLRCGA****************CDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGEVATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDP**********************************************************************************************FLH*****************************************TVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTVVNCVQCHPFDCVVATSGIDNTIKIWTPSASV*************************************************************
Disordered Region (DISOPRED)
MENFPFHDGSIYDMLDTRHTDT**DVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTP*******************************************EEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIK*****************************************************************************VEANFL**************************************YQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTVVNCVQCHPFDCVVATSGIDNTIKIWTPSAS************************************SYELLERFHMHE**************
Disordered Region (DISEMBL)
MENFPFHDGSIYDMLDTRHTDTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHD**************QECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGEVATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHIAAAETEK**************TGRVLSLSDIIYRSE*********************EVEVDFHTSVPGDEGRDVEANFLHGSLNVRIHRRG************************IPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSIVSGGAAGPDTADVLEAMESNQRKLSRNREHSLSYELLERFHMHEFSEGSLRPFECAQS
Disordered Region (DISPRO)
*ENFPFHDGSIYDMLDTRHTDTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGEVATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHIAAAETEK***************GRVLSLSDIIYRS*********************E*VEVDFHTSV*********ANFLHGSLNVRIHRRGDSARETVDANGSSGSPSSSSQNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSIVSGGAAGPDTADVLEAMESNQRKLSRNREHSLSYELLERFHMHEFSEGSLRPFECA**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MENFPFHDGSIYDMLDTRHTDTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGEVATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKxxxxxxxxxxxxxxxxxxxxxGGARSEPRTGRVLSLSDIIYRSEANSDASQDGPRSEREDSDYDEEVEVDFHTSVPGDEGRDVEANFLHGSLNVRIHRRGDSARETVDANGSSGSPSSSSQNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSIVSGGAAGPDTADVLEAMESNQRKLSRNREHSLSYELLERFHMHEFSEGSLRPFECAQS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	751	2.2.26 [Sep-21-2011]
Q8N5D0	677	WD and tetratricopeptide	yes	no	0.560	0.621	0.305	1e-45
Q80ZK9	677	WD and tetratricopeptide	yes	no	0.495	0.549	0.295	1e-43
Q9DC22	876	DDB1- and CUL4-associated	no	no	0.383	0.328	0.313	3e-34
Q5R9B8	860	DDB1- and CUL4-associated	no	no	0.383	0.334	0.310	8e-34
Q58WW2	860	DDB1- and CUL4-associated	no	no	0.383	0.334	0.310	9e-34
O94527	809	WD repeat protein iqw1 OS	yes	no	0.450	0.417	0.288	1e-33
Q5R448	597	DDB1- and CUL4-associated	no	no	0.347	0.437	0.288	5e-28
Q5TAQ9	597	DDB1- and CUL4-associated	no	no	0.347	0.437	0.285	3e-27
Q5U2M6	591	DDB1- and CUL4-associated	no	no	0.311	0.395	0.296	5e-27
Q8N7N5	591	DDB1- and CUL4-associated	no	no	0.347	0.441	0.282	1e-26

>sp|Q8N5D0|WDTC1_HUMAN WD and tetratricopeptide repeats protein 1 OS=Homo sapiens GN=WDTC1 PE=1 SV=2

 Score =  185 bits (470), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 152/497 (30%), Positives = 221/497 (44%), Gaps = 76/497 (15%)

Query: 36  LVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSAN 95
            +RRL  E EL+GH GCVN + WN KG LL SGSDD H  VW     K L S+ TGH+AN
Sbjct: 33  FIRRLGLEAELQGHSGCVNCLEWNEKGDLLASGSDDQHTIVWDPLHHKKLLSMHTGHTAN 92

Query: 96  VFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAV 155
           +F  KF+P   D ++++GA D++V + +L+                ++  HT RVK++A 
Sbjct: 93  IFSVKFLPHAGDRILITGAADSKVHVHDLT----------VKETIHMFGDHTNRVKRIAT 142

Query: 156 EVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLR--CGAKRSLADPPK 213
               P+  WSA+EDG +RQ+D R+        S H E   +L+DL   CG          
Sbjct: 143 APMWPNTFWSAAEDGLIRQYDLRE-------NSKHSE---VLIDLTEYCG---------- 182

Query: 214 QTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFC----- 268
           Q +  K   ++    + L VG S  F RLYD RM+       K+ SP   V+ FC     
Sbjct: 183 QLVEAKCLTVNPQDNNCLAVGASGPFVRLYDIRMIHNHRKSMKQ-SPSAGVHTFCDRQKP 241

Query: 269 --------------PMHLSEHGR--SSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 312
                         P+ L ++      L  T+VTFSPNG E+L++  GE VYL D+ +  
Sbjct: 242 LPDGAAQYYVAGHLPVKLPDYNNRLRVLVATYVTFSPNGTELLVNMGGEQVYLFDLTY-- 299

Query: 313 GRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRG---EVATGLGKCRMLVEI 369
            +   YT     K  S     NG      + + +   + +      +    G     VE+
Sbjct: 300 -KQRPYTFLLPRKCHSSGEVQNGKMSTNGVSNGVSNGLHLHSNGFRLPESRGHVSPQVEL 358

Query: 370 ARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLR--HECLCI--RAALLLKRKWKNDAQM 425
               LE  K       AC +  +        + R  H  +    RAA  +KRKW  D   
Sbjct: 359 P-PYLERVKQQANEAFACQQWTQAIQLYSKAVQRAPHNAMLYGNRAAAYMKRKWDGDHYD 417

Query: 426 AIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKV---- 481
           A+RDC  A  ++    +AH  ++  L +L    EAL      +CLD       E+     
Sbjct: 418 ALRDCLKAISLNPCHLKAHFRLARCLFELKYVAEAL------ECLDDFKGKFPEQAHSSA 471

Query: 482 -ENIKKHIAAAETEKNN 497
            + + + I AA   KN+
Sbjct: 472 CDALGRDITAALFSKND 488

Homo sapiens (taxid: 9606)

>sp|Q80ZK9|WDTC1_MOUSE WD and tetratricopeptide repeats protein 1 OS=Mus musculus GN=Wdtc1 PE=1 SV=1

 Score =  178 bits (452), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 144/488 (29%), Positives = 212/488 (43%), Gaps = 116/488 (23%)

Query: 36  LVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSAN 95
            +RRL  E EL+GH GCVN + WN KG LL SGSDD H  VW     K L S+ TGH+AN
Sbjct: 33  FIRRLGLEAELQGHSGCVNCLEWNEKGDLLASGSDDQHTIVWDPLHHKKLLSMHTGHTAN 92

Query: 96  VFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAV 155
           +F  KF+P   D ++++GA D++V + +L+                ++  HT RVK++A 
Sbjct: 93  IFSVKFLPHAGDRILITGAADSKVHVHDLT----------VKETIHMFGDHTNRVKRIAT 142

Query: 156 EVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLR--CGAKRSLADPPK 213
               P+  WSA+EDG +RQ+D R+        S H E   +L+DL   CG          
Sbjct: 143 APMWPNTFWSAAEDGLIRQYDLRE-------NSKHSE---VLIDLTEYCGP--------- 183

Query: 214 QTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFC----- 268
             +  K   ++    + L VG S  F RLYD RM+        R SP   V+ FC     
Sbjct: 184 -MVEAKCLTVNPQDNNCLAVGASGPFVRLYDIRMIHNHRKSM-RQSPSAGVHTFCDRQKP 241

Query: 269 --------------PMHLSEHGR--SSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG 312
                         P+ L ++      L  T+VTFSPNG E+L++  GE VYL D+ +  
Sbjct: 242 LPDGAAQYYVAGHLPVKLPDYNSRLRVLVATYVTFSPNGTELLVNMGGEQVYLFDLTY-- 299

Query: 313 GRAMRYTV-------------GDASKIMSFTPTLNGLEL----------------QPPIH 343
            +   YT              G  S         NGL L                Q  + 
Sbjct: 300 -KQRPYTFLLPRKCHSVEVQNGKMSTNGVSNGVSNGLHLHSNGFRLPESKGCISPQVELP 358

Query: 344 DFLQTNIRVRGEVATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLR 403
            +L+  ++ +   A    +    +++   ++++  H        N +L G+         
Sbjct: 359 PYLE-RVKQQANEAFACQQWTQAIQLYSQAVQKAPH--------NAMLYGN--------- 400

Query: 404 HECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDF 463
                 RAA  +KRKW  D   A+RDC  A  ++    +AH  ++  L +L    EAL  
Sbjct: 401 ------RAAAYMKRKWDGDHYDALRDCLKAISLNPCHLKAHFRLARCLFELKYVAEAL-- 452

Query: 464 AIAAQCLD 471
               +CLD
Sbjct: 453 ----ECLD 456

Mus musculus (taxid: 10090)

>sp|Q9DC22|DCAF6_MOUSE DDB1- and CUL4-associated factor 6 OS=Mus musculus GN=Dcaf6 PE=1 SV=1

 Score =  147 bits (371), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 101/322 (31%), Positives = 153/322 (47%), Gaps = 34/322 (10%)

Query: 36  LVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSAN 95
            ++RL  E  L  H GCVN I WN  G  ++SGSDDT + + +  SRK+L +I +GH AN
Sbjct: 37  FIQRLKLEATLNVHDGCVNTICWNDTGEYILSGSDDTKLVISNPYSRKVLTTIRSGHRAN 96

Query: 96  VFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAV 155
           +F  KF+P T D+ +VS +GD  +   N+ +       D        + CH     ++  
Sbjct: 97  IFSAKFLPCTDDKQIVSCSGDGVIFYTNIEQ-------DAETNRQCQFTCHYGTTYEIMT 149

Query: 156 EVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECR-NILLDLRCGAKRSLADPPKQ 214
              +P+   S  EDGT+R  D R  +SC     + ++C+ +IL++ R  A      PP  
Sbjct: 150 VPNDPYTFLSCGEDGTVRWFDTRIKTSC-----TKEDCKDDILINCRRAATSVAICPPV- 203

Query: 215 TLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPP-LTSCQKRMSPPPCVNYFCPMHLS 273
                        P+ L VG SD+  R+YDRRML    T           V  F P HLS
Sbjct: 204 -------------PYYLAVGCSDSSVRIYDRRMLGTRATGNYAGRGTTGMVARFIPSHLS 250

Query: 274 EHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTL 333
                S  +T + +S +G+E+L+SYS +++YL D      R ++    +  +     P +
Sbjct: 251 NK---SCRVTSLCYSEDGQEILVSYSSDYIYLFDPKDDTARELKTPSAEERREELRQPPV 307

Query: 334 NGLELQPPIHDFLQTNIRVRGE 355
             L L+    D+  T  R R E
Sbjct: 308 KRLRLR---GDWSDTGPRARPE 326

Ligand-dependent coactivator of nuclear receptors. Enhance transcriptional activity of the nuclear receptors NR3C1 and AR. May function as a substrate receptor for CUL4-DDB1 E3 ubiquitin-protein ligase complex.

Mus musculus (taxid: 10090)

>sp|Q5R9B8|DCAF6_PONAB DDB1- and CUL4-associated factor 6 OS=Pongo abelii GN=DCAF6 PE=2 SV=2

 Score =  145 bits (367), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 100/322 (31%), Positives = 154/322 (47%), Gaps = 34/322 (10%)

Query: 36  LVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSAN 95
            ++RL  E  L  H GCVN I WN  G  ++SGSDDT + + +  SRK+L +I +GH AN
Sbjct: 37  FIQRLKLEATLNVHDGCVNTICWNDTGEYILSGSDDTKLVISNPYSRKVLTTIRSGHRAN 96

Query: 96  VFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAV 155
           +F  KF+P T+D+ +VS +GD  +   N+ +       D        + CH     ++  
Sbjct: 97  IFSAKFLPCTNDKQIVSCSGDGVIFYTNVEQ-------DAETNRQCQFTCHYGTTYEIMT 149

Query: 156 EVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECR-NILLDLRCGAKRSLADPPKQ 214
              +P+   S  EDGT+R  D R  +SC     + ++C+ +IL++ R  A      PP  
Sbjct: 150 VPNDPYTFLSCGEDGTVRWFDTRIKTSC-----TKEDCKDDILINCRRAATSVAICPPI- 203

Query: 215 TLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPP-LTSCQKRMSPPPCVNYFCPMHLS 273
                        P+ L VG SD+  R+YDRRML    T           V  F P HL+
Sbjct: 204 -------------PYYLAVGCSDSSVRIYDRRMLGTRATGNYAGRGTTGMVARFIPSHLN 250

Query: 274 EHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTL 333
                S  +T + +S +G+E+L+SYS +++YL D      R ++    +  +     P +
Sbjct: 251 ---NKSCRVTSLCYSEDGQEILVSYSSDYIYLFDPKDDTARELKTPSAEERREELRQPPV 307

Query: 334 NGLELQPPIHDFLQTNIRVRGE 355
             L L+    D+  T  R R E
Sbjct: 308 KRLRLR---GDWSDTGPRARPE 326

Ligand-dependent coactivator of nuclear receptors. Enhance transcriptional activity of the nuclear receptors NR3C1 and AR. May function as a substrate receptor for CUL4-DDB1 E3 ubiquitin-protein ligase complex.

Pongo abelii (taxid: 9601)

>sp|Q58WW2|DCAF6_HUMAN DDB1- and CUL4-associated factor 6 OS=Homo sapiens GN=DCAF6 PE=1 SV=1

 Score =  145 bits (367), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 100/322 (31%), Positives = 154/322 (47%), Gaps = 34/322 (10%)

Query: 36  LVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSAN 95
            ++RL  E  L  H GCVN I WN  G  ++SGSDDT + + +  SRK+L +I +GH AN
Sbjct: 37  FIQRLKLEATLNVHDGCVNTICWNDTGEYILSGSDDTKLVISNPYSRKVLTTIRSGHRAN 96

Query: 96  VFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAV 155
           +F  KF+P T+D+ +VS +GD  +   N+ +       D        + CH     ++  
Sbjct: 97  IFSAKFLPCTNDKQIVSCSGDGVIFYTNVEQ-------DAETNRQCQFTCHYGTTYEIMT 149

Query: 156 EVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECR-NILLDLRCGAKRSLADPPKQ 214
              +P+   S  EDGT+R  D R  +SC     + ++C+ +IL++ R  A      PP  
Sbjct: 150 VPNDPYTFLSCGEDGTVRWFDTRIKTSC-----TKEDCKDDILINCRRAATSVAICPPI- 203

Query: 215 TLSLKSCDISSTRPHLLLVGGSDAFARLYDRRML-PPLTSCQKRMSPPPCVNYFCPMHLS 273
                        P+ L VG SD+  R+YDRRML    T           V  F P HL+
Sbjct: 204 -------------PYYLAVGCSDSSVRIYDRRMLGTRATGNYAGRGTTGMVARFIPSHLN 250

Query: 274 EHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTL 333
                S  +T + +S +G+E+L+SYS +++YL D      R ++    +  +     P +
Sbjct: 251 NK---SCRVTSLCYSEDGQEILVSYSSDYIYLFDPKDDTARELKTPSAEERREELRQPPV 307

Query: 334 NGLELQPPIHDFLQTNIRVRGE 355
             L L+    D+  T  R R E
Sbjct: 308 KRLRLR---GDWSDTGPRARPE 326

Ligand-dependent coactivator of nuclear receptors. Enhance transcriptional activity of the nuclear receptors NR3C1 and AR. May function as a substrate receptor for CUL4-DDB1 E3 ubiquitin-protein ligase complex.

Homo sapiens (taxid: 9606)

>sp|O94527|IQW1_SCHPO WD repeat protein iqw1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=iqw1 PE=1 SV=1

 Score =  145 bits (366), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 112/388 (28%), Positives = 182/388 (46%), Gaps = 50/388 (12%)

Query: 15  LDTRHTDTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHI 74
           LD R    R  ++  +  +S+ +  +  ++EL GH GCVN + W++ G  L+SGSDDT +
Sbjct: 11  LDYRDWFQR-KISRDIYGNSTWLTGIDLQKELTGHTGCVNTLDWSADGEFLLSGSDDTRL 69

Query: 75  NVWS-YSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLD 133
            VW  ++  K  H I TGH  N+F  KFVP +++  ++S +GD  ++LF+L      G+D
Sbjct: 70  IVWDVFNEYKPRHLISTGHVQNIFSAKFVPYSNNRQILSASGDKLIKLFDLDSSKEGGMD 129

Query: 134 DNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQEC 193
               T +  + C    VK + V   N H     SEDGT RQ+D R+   C    +   +C
Sbjct: 130 HGMETQTRCWSCALDSVKNI-VPCDNGHTFLVCSEDGTARQYDIREPHVC----NQDLDC 184

Query: 194 RNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTS 253
            +IL++          +P +  ++L +  +S + P+   +GG+  +A LYDRRM+     
Sbjct: 185 PSILVNY---------NPYR--INLYTITMSPSNPYYFAIGGTHPYAFLYDRRMVKKSFR 233

Query: 254 CQKRMSPPP-----CVNYFCP-MHLSEHGRSSLHLTHVTFS-PNGEEVLLSYSGEHVYLM 306
               M+  P     CV  F P    +  G    ++T   FS  N  E+L+S++ ++VYL 
Sbjct: 234 DDWTMNTSPEKDCRCVRKFSPDGSCNSQGILDRYITCCQFSAANPNELLVSWNSDYVYLF 293

Query: 307 DVNHAGGRAMRYTVGDASKIMSFTPTLNGLE---LQPPIHDFLQTNIRVRGEVA----TG 359
            V+                  S+TPT N +E    +P     LQT    R   +      
Sbjct: 294 HVHEDK---------------SYTPTFNKIEDSNKKPSKPSLLQTQPLKRKNYSPWYKNN 338

Query: 360 LGKCRMLVEIARN---SLEEGKHPYYGI 384
            G       ++RN   + +  KH +Y +
Sbjct: 339 FGASTPASRVSRNPYTAAQPRKHTFYQM 366

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q5R448|DCAF8_PONAB DDB1- and CUL4-associated factor 8 OS=Pongo abelii GN=DCAF8 PE=2 SV=1

 Score =  127 bits (318), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 93/322 (28%), Positives = 143/322 (44%), Gaps = 61/322 (18%)

Query: 36  LVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSAN 95
            V+R   +  LEGH GCVN + +N +G+ L SGSDD  + VW +  R+ +   E+GH +N
Sbjct: 179 FVQRFRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDLKVVVWDWVRRQPVLDFESGHKSN 238

Query: 96  VFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQC--HTRRVK-- 151
           VF  KF+P + D  +   A D +VR+  LS                  QC  +T+RV   
Sbjct: 239 VFQAKFLPNSGDSTLAMRARDGQVRVAELS----------------ATQCCKNTKRVAQH 282

Query: 152 -----KLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKR 206
                KLA+E  +P    SA ED  +   D RQ                     R  +K 
Sbjct: 283 KGASHKLALEPDSPCTFLSAGEDAVVFTIDLRQD--------------------RPASKL 322

Query: 207 SLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNY 266
            +    ++ + L +  ++    H   VGG D F R+YD+R +               +  
Sbjct: 323 VVTKEKEKKVGLYTIYVNPANTHQFAVGGRDQFVRIYDQRKI-------DENENNGVLKK 375

Query: 267 FCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGR--AMRYTVGDAS 324
           FCP HL  +G S  ++T + +S +G E+L SY+ E +YL + +H+ G     RY      
Sbjct: 376 FCPHHLV-NGESKANITCLVYSHDGTELLASYNDEDIYLFNSSHSDGAQYVKRY------ 428

Query: 325 KIMSFTPTLNGLELQPPIHDFL 346
           K      T+ G+    P  +F+
Sbjct: 429 KGHRNNATVKGVNFYGPKSEFV 450

May function as a substrate receptor for CUL4-DDB1 E3 ubiquitin-protein ligase complex.

Pongo abelii (taxid: 9601)

>sp|Q5TAQ9|DCAF8_HUMAN DDB1- and CUL4-associated factor 8 OS=Homo sapiens GN=DCAF8 PE=1 SV=1

 Score =  124 bits (311), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 92/322 (28%), Positives = 142/322 (44%), Gaps = 61/322 (18%)

Query: 36  LVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSAN 95
            V+R   +  LEGH GCVN + +N +G+ L SGSDD  + VW +  R+ +   E+GH +N
Sbjct: 179 FVQRFRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDLKVVVWDWVRRQPVLDFESGHKSN 238

Query: 96  VFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQC--HTRRVK-- 151
           VF  KF+P + D  +   A D +VR+  LS                  QC  +T+RV   
Sbjct: 239 VFQAKFLPNSGDSTLAMCARDGQVRVAELS----------------ATQCCKNTKRVAQH 282

Query: 152 -----KLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKR 206
                KLA+E  +P    SA ED  +   D RQ                     R  +K 
Sbjct: 283 KGASHKLALEPDSPCTFLSAGEDAVVFTIDLRQD--------------------RPASKL 322

Query: 207 SLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNY 266
            +    ++ + L +  ++    H   VGG D F R+YD+R +               +  
Sbjct: 323 VVTKEKEKKVGLYTIYVNPANTHQFAVGGRDQFVRIYDQRKI-------DENENNGVLKK 375

Query: 267 FCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGR--AMRYTVGDAS 324
           FCP HL  +  S  ++T + +S +G E+L SY+ E +YL + +H+ G     RY      
Sbjct: 376 FCPHHLV-NSESKANITCLVYSHDGTELLASYNDEDIYLFNSSHSDGAQYVKRY------ 428

Query: 325 KIMSFTPTLNGLELQPPIHDFL 346
           K      T+ G+    P  +F+
Sbjct: 429 KGHRNNATVKGVNFYGPKSEFV 450

May function as a substrate receptor for CUL4-DDB1 E3 ubiquitin-protein ligase complex.

Homo sapiens (taxid: 9606)

>sp|Q5U2M6|DCAF8_RAT DDB1- and CUL4-associated factor 8 OS=Rattus norvegicus GN=Dcaf8 PE=2 SV=1

 Score =  123 bits (309), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 85/287 (29%), Positives = 131/287 (45%), Gaps = 53/287 (18%)

Query: 36  LVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSAN 95
            V+R   +  LEGH GCVN + +N +G+ L SGSDD  + VW +  R+ +   E+GH +N
Sbjct: 173 FVQRFRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDLKVVVWDWVRRQPVLDFESGHKSN 232

Query: 96  VFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQC--HTRRVK-- 151
           VF  KF+P + D  +   A D +VR+  LS                  QC  +T+RV   
Sbjct: 233 VFQAKFLPNSGDSTLAMCARDGQVRVAELS----------------ATQCCKNTKRVAQH 276

Query: 152 -----KLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKR 206
                KLA+E  +P    SA ED  +   D RQ                     R  +K 
Sbjct: 277 KGASHKLALEPDSPCTFLSAGEDAVVFTIDLRQD--------------------RPASKL 316

Query: 207 SLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNY 266
            +    ++ + L +  ++    H   VGG D F R+YD+R +               +  
Sbjct: 317 VVTKEKEKKVGLYTIYVNPANTHQFAVGGRDQFVRIYDQRKI-------DENENNGVLKK 369

Query: 267 FCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGG 313
           FCP HL  +  S  ++T + +S +G E+L SY+ E +YL + +H+ G
Sbjct: 370 FCPHHLV-NSESKANITCLVYSHDGTELLASYNDEDIYLFNSSHSDG 415

May function as a substrate receptor for CUL4-DDB1 E3 ubiquitin-protein ligase complex.

Rattus norvegicus (taxid: 10116)

>sp|Q8N7N5|DCAF8_MOUSE DDB1- and CUL4-associated factor 8 OS=Mus musculus GN=Dcaf8 PE=1 SV=1

 Score =  122 bits (306), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 91/322 (28%), Positives = 142/322 (44%), Gaps = 61/322 (18%)

Query: 36  LVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSAN 95
            V+R   +  LEGH GCVN + +N +G+ L SGSDD  + VW +  R+ +   E+GH +N
Sbjct: 173 FVQRFRLQHGLEGHTGCVNTLHFNQRGTWLASGSDDLKVVVWDWVRRQPVLDFESGHKSN 232

Query: 96  VFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQC--HTRRVK-- 151
           VF  KF+P + D  +   A D +VR+  LS                  QC  +T+RV   
Sbjct: 233 VFQAKFLPNSGDSTLAMCARDGQVRVAELS----------------ATQCCKNTKRVAQH 276

Query: 152 -----KLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKR 206
                KLA+E  +P    SA ED  +   D RQ                     R  +K 
Sbjct: 277 KGASHKLALEPDSPCTFLSAGEDAVVFTIDLRQD--------------------RPASKL 316

Query: 207 SLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNY 266
            +    ++ + L +  ++    H   VGG D + R+YD+R +               +  
Sbjct: 317 VVTKEKEKKVGLYTIYVNPANTHQFAVGGRDQYVRIYDQRKI-------DENENNGVLKK 369

Query: 267 FCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAM--RYTVGDAS 324
           FCP HL  +  S  ++T + +S +G E+L SY+ E +YL + +H+ G     RY      
Sbjct: 370 FCPHHLV-NSESKANITCLVYSHDGTELLASYNDEDIYLFNSSHSDGAQYIKRY------ 422

Query: 325 KIMSFTPTLNGLELQPPIHDFL 346
           K      T+ G+    P  +F+
Sbjct: 423 KGHRNNATVKGVNFYGPKSEFV 444

May function as a substrate receptor for CUL4-DDB1 E3 ubiquitin-protein ligase complex.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	751
224081993	756	predicted protein [Populus trichocarpa]	0.990	0.984	0.778	0.0
255545904	761	WD and tetratricopeptide repeat protein,	0.997	0.984	0.762	0.0
302142032	762	unnamed protein product [Vitis vinifera]	0.998	0.984	0.749	0.0
449436964	759	PREDICTED: WD and tetratricopeptide repe	0.994	0.984	0.719	0.0
297811205	755	hypothetical protein ARALYDRAFT_487925 [	0.985	0.980	0.704	0.0
334187604	754	WD and tetratricopeptide repeats protein	0.985	0.981	0.707	0.0
18416416	757	WD and tetratricopeptide repeats protein	0.986	0.978	0.704	0.0
357465333	758	DDB1- and CUL4-associated factor [Medica	0.988	0.978	0.706	0.0
356515704	762	PREDICTED: WD and tetratricopeptide repe	0.994	0.980	0.701	0.0
356508017	762	PREDICTED: WD and tetratricopeptide repe	0.994	0.980	0.699	0.0

>gi|224081993|ref|XP_002306549.1| predicted protein [Populus trichocarpa] gi|222855998|gb|EEE93545.1| predicted protein [Populus trichocarpa]

 Score = 1222 bits (3163), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 594/763 (77%), Positives = 665/763 (87%), Gaps = 19/763 (2%)

Query: 1   MENFPFHDGSIYDMLDTRHTDTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNS 60
           M+N+ FHDG+I +ML++RH   RPDVNHSLQMHSSL+RRLSQERELEGHQGCVN+I+WNS
Sbjct: 1   MDNYGFHDGNICNMLESRH---RPDVNHSLQMHSSLIRRLSQERELEGHQGCVNSIAWNS 57

Query: 61  KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR 120
           KGSLLISGSDDT +N+W+Y+ RKLLHSI+TGHSAN+FCTKFVPETSDELVV+GAGDAEVR
Sbjct: 58  KGSLLISGSDDTRMNIWNYAGRKLLHSIDTGHSANIFCTKFVPETSDELVVAGAGDAEVR 117

Query: 121 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQG 180
           LFNLSR SGR  DDN+I PSALYQCHTRRVKKLAVEVGNP+VVWSASEDGTLRQHDFR+G
Sbjct: 118 LFNLSRLSGRSPDDNSIAPSALYQCHTRRVKKLAVEVGNPNVVWSASEDGTLRQHDFREG 177

Query: 181 SSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFA 240
           +SCPPAGSSH ECRNILLDLR GAKRSLADPPKQTL+L+SCDIS++RPHLLLVGGSDAFA
Sbjct: 178 ASCPPAGSSH-ECRNILLDLRSGAKRSLADPPKQTLALRSCDISTSRPHLLLVGGSDAFA 236

Query: 241 RLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG 300
           RLYDRRMLPPLTSC+KRMSPPPCVNYFCPMHLSE GRSSLHLTHVTFSPNG+EVLLSYSG
Sbjct: 237 RLYDRRMLPPLTSCRKRMSPPPCVNYFCPMHLSERGRSSLHLTHVTFSPNGDEVLLSYSG 296

Query: 301 EHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGEVATGL 360
           EHVYLM+VNH+GG A+RYT GD SK+M+F PTLNGLELQP      +     +   ++ L
Sbjct: 297 EHVYLMNVNHSGGTAVRYTTGDTSKLMTFAPTLNGLELQPLPSCVFKRQSHSKTNGSSML 356

Query: 361 GKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWK 420
            KCR LV+IA  SLEEG   +YGIEACNEVL+GH   IGP LRHECLCIRAALLLKRKWK
Sbjct: 357 EKCRRLVQIAEKSLEEGTCYFYGIEACNEVLDGHGRVIGPTLRHECLCIRAALLLKRKWK 416

Query: 421 NDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEK 480
           ND  MAIRDC+NARRIDSSSFRA  YMSEAL +L K+KEAL+F+IAAQC  P N+ +A  
Sbjct: 417 NDVHMAIRDCFNARRIDSSSFRALYYMSEALSRLGKHKEALEFSIAAQCSAPGNTEVAVL 476

Query: 481 VENIKKHIAAAETEKNNKANDGGARSEPRTGRVLSLSDIIYRSEANSDASQDGPRSERED 540
           +E+I+K++A A   K++K NDG  RSE R GR LSLSDI+Y SEANS+AS DGP S+RED
Sbjct: 477 MEDIRKNLATA--GKSSKENDGATRSETRNGRALSLSDILYHSEANSEASHDGPGSDRED 534

Query: 541 SDYDEEVEVDFHTSVPGDEGRDVEANFLHGSLNVRIHRRGDSARETVDANGSSGSPSSSS 600
           SDYDEE+E+DF TSV GDEGRDVE N LHGSLN+RIHR+GDSAR++   NGS GSP SSS
Sbjct: 535 SDYDEELELDFETSVSGDEGRDVEPNILHGSLNLRIHRKGDSARDSSCTNGSCGSP-SSS 593

Query: 601 QNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQT-- 658
           QNDR PYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDY+ASGSDDGRWFIWEKQT  
Sbjct: 594 QNDRTPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYVASGSDDGRWFIWEKQTGR 653

Query: 659 ----------VVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSIVSGGAAGPDTADVLE 708
                     VVNC+QCHPFDCVVATSGIDNTIKIWTPSASVPSIV+GGAAGP+T++VLE
Sbjct: 654 LIKMLLGDEAVVNCIQCHPFDCVVATSGIDNTIKIWTPSASVPSIVAGGAAGPETSNVLE 713

Query: 709 AMESNQRKLSRNREHSLSYELLERFHMHEFSEGSLRPFECAQS 751
           AMESNQR+L  NRE  L +ELLERF MHEF+EG+L PFECAQS
Sbjct: 714 AMESNQRRLCHNREAILPFELLERFRMHEFTEGTLHPFECAQS 756

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255545904|ref|XP_002514012.1| WD and tetratricopeptide repeat protein, putative [Ricinus communis] gi|223547098|gb|EEF48595.1| WD and tetratricopeptide repeat protein, putative [Ricinus communis]

 Score = 1221 bits (3160), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 582/763 (76%), Positives = 660/763 (86%), Gaps = 14/763 (1%)

Query: 1   MENFPFHDGSIYDMLDTRHTDTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNS 60
           M+   FHDG+IY+ L+TR+ D+R D+NHSLQMHSSL+RRLSQERELEGHQGCVN+I+WNS
Sbjct: 1   MDTCGFHDGNIYNFLETRYFDSRRDINHSLQMHSSLIRRLSQERELEGHQGCVNSIAWNS 60

Query: 61  KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR 120
            GSLL+SGSDDT +N+WSYS RKLLHSI+TGHSAN+FCTKF+PETSDELVVSGAGDAEVR
Sbjct: 61  TGSLLVSGSDDTRMNIWSYSGRKLLHSIDTGHSANIFCTKFIPETSDELVVSGAGDAEVR 120

Query: 121 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQG 180
           LFNLSR SGRG DDNAI P ALYQCHT+RVKKLAVEVGNP+VVWSASEDGTLRQHD R+ 
Sbjct: 121 LFNLSRLSGRGPDDNAIAPLALYQCHTKRVKKLAVEVGNPNVVWSASEDGTLRQHDLRED 180

Query: 181 SSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFA 240
           SSCPPAGSS QECRN+LLDLRCGAKRSL DPPKQTL+LKSCDIS+ RPHLLLVGGSDAFA
Sbjct: 181 SSCPPAGSSPQECRNVLLDLRCGAKRSLVDPPKQTLALKSCDISARRPHLLLVGGSDAFA 240

Query: 241 RLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG 300
           RLYDRRMLPPLTSC+KRM PPPCVNY CPMHLSE GRS LHLTHVTFSP+G+EVLLSYSG
Sbjct: 241 RLYDRRMLPPLTSCRKRMPPPPCVNYICPMHLSERGRSGLHLTHVTFSPSGDEVLLSYSG 300

Query: 301 EHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGEVATGL 360
           EHVYLM+VNHAGG +M+YT GDASK+M+F P LNGLELQPP  D  +  +R +  VA+ L
Sbjct: 301 EHVYLMNVNHAGGSSMQYTTGDASKLMTFAPILNGLELQPPPSDISKNGLRFKSYVASTL 360

Query: 361 GKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWK 420
            KCR L++ A   L++G + +YGIEACNEVL+ H   I P +RH+CLC RAALLLKRKWK
Sbjct: 361 QKCRKLLQFAEKCLDDGANFFYGIEACNEVLDRHGRDISPAIRHDCLCTRAALLLKRKWK 420

Query: 421 NDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEK 480
           ND  MAIRDCYNARRIDSSSFRA  YMSEAL QL KYKEALDFA+A+QC+ PS++ +AE 
Sbjct: 421 NDVHMAIRDCYNARRIDSSSFRALYYMSEALSQLGKYKEALDFAVASQCVAPSDTEIAEW 480

Query: 481 VENIKKHIAAAETEKNNKANDGGARSEPRTGRVLSLSDIIYRSEANSDASQDGPRSERED 540
           VENIK ++A AE EK NKANDG  +SE R+GR LSLSDI+YRSEA SD SQDGP +ERE+
Sbjct: 481 VENIKNNLAQAEAEKTNKANDGALKSESRSGRALSLSDILYRSEATSDGSQDGP-TEREE 539

Query: 541 SDYDEEVEVDFHTSVPGDEGRDVEANFLHGSLNVRIHRRGDSARETVDANGSSGSPSSSS 600
           SDYDEE+E+DF TS+ GDEGRD+E N LHGSLN+RIHRRGDS+RET   NGS GSP SSS
Sbjct: 540 SDYDEELELDFETSISGDEGRDIEPNTLHGSLNLRIHRRGDSSRETSCTNGSCGSP-SSS 598

Query: 601 QNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQT-- 658
            NDR+PYQPETVIDMKQR+VGHCNVGTDIKQASFLG+RG+Y+ASGSDDGRWFIWEKQT  
Sbjct: 599 HNDRMPYQPETVIDMKQRFVGHCNVGTDIKQASFLGERGEYVASGSDDGRWFIWEKQTGR 658

Query: 659 ----------VVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSIVSGGAAGPDTADVLE 708
                     V+NCVQ HPFDCVVATSGIDNTIKIWTP+ASVPS V+GG+AGP+T+DVL+
Sbjct: 659 LIKMLLGDEAVLNCVQSHPFDCVVATSGIDNTIKIWTPTASVPSNVAGGSAGPETSDVLD 718

Query: 709 AMESNQRKLSRNREHSLSYELLERFHMHEFSEGSLRPFECAQS 751
            MESNQR+LS NRE  L +ELLERF MHEF+EG+L P ECAQS
Sbjct: 719 VMESNQRRLSHNREVILPFELLERFRMHEFTEGTLHPLECAQS 761

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302142032|emb|CBI19235.3| unnamed protein product [Vitis vinifera]

 Score = 1197 bits (3096), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 572/763 (74%), Positives = 652/763 (85%), Gaps = 13/763 (1%)

Query: 1   MENFPFHDGSIYDMLDTRHTDTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNS 60
           ME   FHD ++Y+ +D R  D R DV+ SLQMHSSL+RRL+QE ELEGHQGCVN ++WNS
Sbjct: 1   METTNFHDSNLYNFVDGRSIDFRHDVSRSLQMHSSLLRRLTQEGELEGHQGCVNTVAWNS 60

Query: 61  KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR 120
           +GSLLISGSDDT IN+W+Y SRKLLH IETGHSAN+FC KF+PETSDELV SGAGDAEVR
Sbjct: 61  RGSLLISGSDDTRINIWNYPSRKLLHCIETGHSANIFCAKFIPETSDELVASGAGDAEVR 120

Query: 121 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQG 180
           LF+LSR SGRG D+NAITPSAL+QCHTRRVKKLAVEVGNP+VVWSASEDGTLRQHDFR+G
Sbjct: 121 LFHLSRLSGRGPDENAITPSALFQCHTRRVKKLAVEVGNPNVVWSASEDGTLRQHDFREG 180

Query: 181 SSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFA 240
           +SCPPAGSSHQECRN+LLDLRCGAK+SLADPPKQ LSLKSCDISSTRPHLLLVGGSDAFA
Sbjct: 181 ASCPPAGSSHQECRNVLLDLRCGAKKSLADPPKQCLSLKSCDISSTRPHLLLVGGSDAFA 240

Query: 241 RLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG 300
           RLYDRRMLPPLTSC K M+PPPCVNYFCPMHLS+HGRSSLHLTHVTFSPNGEEVL+SYS 
Sbjct: 241 RLYDRRMLPPLTSCGKTMTPPPCVNYFCPMHLSDHGRSSLHLTHVTFSPNGEEVLISYSA 300

Query: 301 EHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGEVATGL 360
           EHVYLMDVNHA G  + Y  GDA K+M+ +P L+G+    P+ D    +  ++  +A  L
Sbjct: 301 EHVYLMDVNHACGSTVCYAPGDALKLMNPSPILDGIGFGSPVSDAFTYDFSMKSNIAAKL 360

Query: 361 GKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWK 420
            KCR LV+ A   L+EG   +YGIEACNEVL+GH   IGP L+H+CLC RAALLLKRKWK
Sbjct: 361 DKCRKLVQFAERCLKEGTDYFYGIEACNEVLDGHPHEIGPTLKHDCLCTRAALLLKRKWK 420

Query: 421 NDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEK 480
           NDA MAIRDC  ARRID+SSF+A  YMSEAL QL K+KEAL+FA+A+QCL P +S +AE+
Sbjct: 421 NDAHMAIRDCNRARRIDTSSFKALFYMSEALLQLNKHKEALEFAVASQCLAPYDSEVAER 480

Query: 481 VENIKKHIAAAETEKNNKANDGGARSEPRTGRVLSLSDIIYRSEANSDASQDGPRSERED 540
           VE+IKKH+AAAE EK+NK+NDG  RSE R+GR LSLS+I+YRSEANSDASQDGPRSERED
Sbjct: 481 VEDIKKHLAAAEAEKSNKSNDGVPRSETRSGRFLSLSEILYRSEANSDASQDGPRSERED 540

Query: 541 SDYDEEVEVDFHTSVPGDEGRDVEANFLHGSLNVRIHRRGDSARETVDANGSSGSPSSSS 600
           SDYDEE+E+DF TSV GDEGRDVE+N LHGSLN+RIHRR DSARET   NG+ GSP +SS
Sbjct: 541 SDYDEELELDFETSVSGDEGRDVESNILHGSLNLRIHRRCDSARETSGTNGACGSP-TSS 599

Query: 601 QNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQT-- 658
           +ND+  YQPET IDMKQRYVGHCN+GTDIKQASFLG RG+Y+ASGSDDGRWFIW+K+T  
Sbjct: 600 RNDKTTYQPETAIDMKQRYVGHCNIGTDIKQASFLGCRGEYVASGSDDGRWFIWDKRTGR 659

Query: 659 ----------VVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSIVSGGAAGPDTADVLE 708
                     VVNCVQCHPFDC VATSGIDNTIKIWTPSA +PSIV+GGAAGP+TADVLE
Sbjct: 660 LIKMLMGDEHVVNCVQCHPFDCTVATSGIDNTIKIWTPSAPIPSIVAGGAAGPETADVLE 719

Query: 709 AMESNQRKLSRNREHSLSYELLERFHMHEFSEGSLRPFECAQS 751
           AME+NQRKL RNR+  L +ELLERF MH+F EG+L PFEC+QS
Sbjct: 720 AMENNQRKLCRNRDAILPFELLERFRMHDFGEGTLHPFECSQS 762

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449436964|ref|XP_004136262.1| PREDICTED: WD and tetratricopeptide repeats protein 1-like [Cucumis sativus] gi|449497029|ref|XP_004160293.1| PREDICTED: WD and tetratricopeptide repeats protein 1-like [Cucumis sativus]

 Score = 1135 bits (2937), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 549/763 (71%), Positives = 631/763 (82%), Gaps = 16/763 (2%)

Query: 1   MENFPFHDGSIYDMLDTRHTDTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNS 60
           ME+F FHDG++  +L++RH + R D  + LQMHSS ++RLSQE+ELEGHQGCVNA++WNS
Sbjct: 1   MEDFAFHDGNVCALLESRHINFRQDPAYGLQMHSSFIQRLSQEKELEGHQGCVNAVAWNS 60

Query: 61  KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR 120
           +GSLLISGSDDT IN+WSYS RKLLHS++TGHSAN+FCTKFVPE SD+LV+SGAGDAEVR
Sbjct: 61  RGSLLISGSDDTRINIWSYSGRKLLHSVDTGHSANIFCTKFVPEMSDDLVLSGAGDAEVR 120

Query: 121 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQG 180
           LFNLSR  GRG DDN I PSALY+CH RRVKKLAVE+GNP+VVWSASEDGTLRQHDFR+G
Sbjct: 121 LFNLSRLRGRGQDDNPIAPSALYRCHARRVKKLAVEIGNPNVVWSASEDGTLRQHDFREG 180

Query: 181 SSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFA 240
            SCPP G+SHQEC N+LLDLRCGAKRSLADPP+QTL+LKSCDISSTRPHLLLVGGSDAFA
Sbjct: 181 MSCPPDGASHQECHNVLLDLRCGAKRSLADPPRQTLALKSCDISSTRPHLLLVGGSDAFA 240

Query: 241 RLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG 300
           RLYDRRMLPPL+S QKRMSPPPCV+YFCPMHLS+  RS LHLTHVTFSPNGEE+LLSYSG
Sbjct: 241 RLYDRRMLPPLSSSQKRMSPPPCVSYFCPMHLSDRVRSGLHLTHVTFSPNGEEILLSYSG 300

Query: 301 EHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGEVATGL 360
           EHVYLM+VNH G   M+YT GD SK+MSFTP LNG ELQ  + +      R        L
Sbjct: 301 EHVYLMNVNHGGLGTMQYTSGDVSKLMSFTPVLNGFELQHHVSNLSNNGSRFNLTSIFQL 360

Query: 361 GKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWK 420
            + R L++IA   LE G + + GIEACNE+L+G+   IG +L+H+ LC RAALLLKRKWK
Sbjct: 361 DRSRKLLQIAEKCLEGGNY-FGGIEACNEILDGNGRNIGVILKHDSLCTRAALLLKRKWK 419

Query: 421 NDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEK 480
           ND  MAIRDCY+AR+ID SSFRAH YM EAL QL ++KEALDFA AAQCL PSNS +AEK
Sbjct: 420 NDVHMAIRDCYSARKIDHSSFRAHYYMCEALSQLGRHKEALDFAFAAQCLAPSNSEVAEK 479

Query: 481 VENIKKHIAAAETEKNNKANDGGARSEPRTGRVLSLSDIIYRSEANSDASQDGPRSERED 540
           VE+IK+ +AAAE EK+NK NDG  +S P  G VLSLSD +YRS+ANSD SQDG RSERED
Sbjct: 480 VESIKRDLAAAELEKSNKGNDGALKSAP-LGGVLSLSDFLYRSDANSDVSQDGLRSERED 538

Query: 541 SDYDEEVEVDFHTSVPGDEGRDVEANFLHGSLNVRIHRRGDSARETVDANGSSGSPSSSS 600
           SDYDEEVE+DF T + GDE  DV++N LHGSLN+RIHRR D +RE V  NGS GSP SSS
Sbjct: 539 SDYDEEVELDFET-LSGDESHDVDSNVLHGSLNLRIHRRIDPSRERVGPNGSCGSP-SSS 596

Query: 601 QNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQT-- 658
           QND   YQPE VIDMKQRYVGHCN+GTDIKQASFLGQ+G+Y+ASGSDDGRWFIWEK+T  
Sbjct: 597 QNDATLYQPEPVIDMKQRYVGHCNIGTDIKQASFLGQKGEYVASGSDDGRWFIWEKETGR 656

Query: 659 ----------VVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSIVSGGAAGPDTADVLE 708
                     VVNCVQ HPFDC +ATSGIDNTIK+WTP+A VPS+V+GGA GP  ADVL 
Sbjct: 657 LIKILVGDGAVVNCVQSHPFDCAIATSGIDNTIKLWTPTAPVPSVVAGGAVGPQEADVLA 716

Query: 709 AMESNQRKLSRNREHSLSYELLERFHMHEFSEGSLRPFECAQS 751
            +E+NQR+L RNRE  L +E+LERF MH+FSEGSL PFECAQS
Sbjct: 717 VIENNQRRLCRNREAILPFEILERFRMHDFSEGSLHPFECAQS 759

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297811205|ref|XP_002873486.1| hypothetical protein ARALYDRAFT_487925 [Arabidopsis lyrata subsp. lyrata] gi|297319323|gb|EFH49745.1| hypothetical protein ARALYDRAFT_487925 [Arabidopsis lyrata subsp. lyrata]

 Score = 1102 bits (2851), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 540/766 (70%), Positives = 627/766 (81%), Gaps = 26/766 (3%)

Query: 1   MENFPFHDGSIYDMLDTRHTDTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNS 60
           MEN  FHDG+I+++L TR  D   +V+  +Q+HSSLVRRLSQE+ELEGHQGCVN ++WNS
Sbjct: 1   MENLSFHDGNIFNLLHTRSQDPSHEVDQRMQLHSSLVRRLSQEQELEGHQGCVNTLAWNS 60

Query: 61  KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR 120
            GSLLISGSDD  IN+W+YSSR LLHSI+TGH+AN+FCTKFVPETSDELVVSGAGDAEVR
Sbjct: 61  NGSLLISGSDDLRINIWNYSSRTLLHSIDTGHTANIFCTKFVPETSDELVVSGAGDAEVR 120

Query: 121 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQG 180
           LFNLS  SGR  DDNAITPSALYQCHTRRVKKLAVE GNP+VVWSASEDGTLRQHDFR+ 
Sbjct: 121 LFNLSHLSGRAEDDNAITPSALYQCHTRRVKKLAVEPGNPNVVWSASEDGTLRQHDFRES 180

Query: 181 SSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFA 240
           +SCPPAG++HQECR++LLDLR GAKR+LADPPKQTLSLKSCDIS+TRPHLLLVGGSDAFA
Sbjct: 181 TSCPPAGTAHQECRSVLLDLRSGAKRALADPPKQTLSLKSCDISATRPHLLLVGGSDAFA 240

Query: 241 RLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG 300
           RLYDRRMLPPLTS +KRM PPPCVNYFCPMHLS+ GR++LHLTHVTFSPNGEEVLLSYSG
Sbjct: 241 RLYDRRMLPPLTSSRKRMPPPPCVNYFCPMHLSDRGRTNLHLTHVTFSPNGEEVLLSYSG 300

Query: 301 EHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGEVATGL 360
           EHVYLM+VN+  G  ++YT GD   + SF+  L+ +E  P +    Q         AT +
Sbjct: 301 EHVYLMNVNNGTG-ILQYTQGDVDNLFSFSNNLHDVEYPPQVSTTPQNGFHRNCNAAT-V 358

Query: 361 GKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWK 420
            KC  LVEIA+ SLEEG   +Y IEA NEVL+GH + I   LRHECLC RAALLLKRKWK
Sbjct: 359 KKCTELVEIAKRSLEEGTDVFYAIEAANEVLDGHSNDIDSALRHECLCTRAALLLKRKWK 418

Query: 421 NDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEK 480
           NDA MA+RDC+NAR+ID+SSF+AH YMSEAL+QL + KEALDFA AAQ L+PS++ +  K
Sbjct: 419 NDAHMAVRDCHNARKIDASSFKAHYYMSEALQQLGRCKEALDFANAAQHLNPSDADIVAK 478

Query: 481 VENIKKHIAAAETEKNNKANDGGARSEPRTGRVLSLSDIIYRSEANSDASQDGPRSERED 540
           VE+IK+ + AA +EKN +   G       T RVLSLSDI+YRSEANSD+S D  RSERED
Sbjct: 479 VESIKRDLQAAGSEKNEETGAG-------TTRVLSLSDILYRSEANSDSSHDMSRSERED 531

Query: 541 SDYDEEVEVDFHTSVPGDEGRDVEANFLHGSLNVRIHRRGDSAR---ETVDANGSSGSPS 597
           SDYDEE+E+D  TS+  DEGRD E+N + GSLN+RIHR GD  +    TVD N SSG+ +
Sbjct: 532 SDYDEELELDIQTSLSDDEGRDPESNAMRGSLNLRIHRVGDDDKPMENTVD-NASSGT-A 589

Query: 598 SSSQNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQ 657
           SSSQNDR  YQPE  IDMK+RYVGHCNVGTDIKQASFLGQRG+YIASGSDDGRWFIWEKQ
Sbjct: 590 SSSQNDRTSYQPEGAIDMKRRYVGHCNVGTDIKQASFLGQRGEYIASGSDDGRWFIWEKQ 649

Query: 658 T------------VVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSIVSGGAAGPDTAD 705
           T            V+NC+QCHPFD VVATSGIDNTIKIW+P+ASVPS+V+GG+AGP TA+
Sbjct: 650 TGRLMKVLVGDEAVLNCIQCHPFDSVVATSGIDNTIKIWSPTASVPSVVAGGSAGPATAN 709

Query: 706 VLEAMESNQRKLSRNREHSLSYELLERFHMHEFSEGSLRPFECAQS 751
           V+E MESNQ+KLSRNRE+ LS EL++RF M EF+EG+  PFEC QS
Sbjct: 710 VVEVMESNQQKLSRNRENPLSVELMQRFRMQEFAEGNFHPFECTQS 755

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334187604|ref|NP_001190286.1| WD and tetratricopeptide repeats protein 1 [Arabidopsis thaliana] gi|8979728|emb|CAB96849.1| putative protein [Arabidopsis thaliana] gi|332004229|gb|AED91612.1| WD and tetratricopeptide repeats protein 1 [Arabidopsis thaliana]

 Score = 1102 bits (2850), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 541/765 (70%), Positives = 623/765 (81%), Gaps = 25/765 (3%)

Query: 1   MENFPFHDGSIYDMLDTRHTDTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNS 60
           M+N  FHDG+I+++L TR  D   +V+  +Q HSSLVRRLSQE+ELEGHQGCVNA++WNS
Sbjct: 1   MDNLSFHDGNIFNLLHTRSQDPSHEVDQRMQFHSSLVRRLSQEQELEGHQGCVNALAWNS 60

Query: 61  KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR 120
            GSLLISGSDD  IN+W+YSSRKLLHSI+TGH+AN+FCTKFVPETSDELVVSGAGDAEVR
Sbjct: 61  NGSLLISGSDDLRINIWNYSSRKLLHSIDTGHTANIFCTKFVPETSDELVVSGAGDAEVR 120

Query: 121 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQG 180
           LFN SR SGR  DDNAI PSALYQCHTRRVKKLAVE GNP+VVWSASEDGTLRQHDFR+ 
Sbjct: 121 LFNTSRLSGRAEDDNAIIPSALYQCHTRRVKKLAVEPGNPNVVWSASEDGTLRQHDFRES 180

Query: 181 SSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFA 240
           +SCPPAG++HQECR++LLDLR GAKR+LADPPKQTLSLKSCDIS+TRPHLLLVGGSDAFA
Sbjct: 181 TSCPPAGTAHQECRSVLLDLRSGAKRALADPPKQTLSLKSCDISATRPHLLLVGGSDAFA 240

Query: 241 RLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG 300
           RLYDRRMLPPL S +KRM PPPCVNYFCPMHLSE GR++LHLTHVTFSPNGEEVLLSYSG
Sbjct: 241 RLYDRRMLPPLASSRKRMPPPPCVNYFCPMHLSERGRTNLHLTHVTFSPNGEEVLLSYSG 300

Query: 301 EHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGEVATGL 360
           EHVYLM+VN+  G  M+YT GD   + SF+  L+ +E  P +    Q         AT +
Sbjct: 301 EHVYLMNVNNGTG-IMQYTPGDVDNLFSFSNNLHDVESPPQVSTTPQNGFHRSSNAAT-V 358

Query: 361 GKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWK 420
            KC  LVEIA+ SLEEG   +Y IEA NEVL+ H + I   LRHECLC RAALLLKRKWK
Sbjct: 359 KKCTELVEIAKWSLEEGTDVFYAIEAANEVLDAHSNDIESALRHECLCTRAALLLKRKWK 418

Query: 421 NDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEK 480
           NDA MA+RDC+NARRID+SSF+AH YMSEAL+QL K KEALDFA AAQ ++PS++ +  K
Sbjct: 419 NDAHMAVRDCHNARRIDASSFKAHYYMSEALQQLGKCKEALDFATAAQHMNPSDADIVAK 478

Query: 481 VENIKKHIAAAETEKNNKANDGGARSEPRTGRVLSLSDIIYRSEANSDASQDGPRSERED 540
           VE+IK+ + AA  EKN +   G       T RVLSLSDI+YRSEANSD+S D  RSERED
Sbjct: 479 VESIKRDLQAAGAEKNEETGAG-------TTRVLSLSDILYRSEANSDSSHDMSRSERED 531

Query: 541 SDYDEEVEVDFHTSVPGDEGRDVEANFLHGSLNVRIHRRGDSA--RETVDANGSSGSPSS 598
           SDYDEE+E+D  TS+  DEGRD ++N + GSLN+RIHR GD      TVD N SSG+ +S
Sbjct: 532 SDYDEELELDIQTSLSDDEGRDTDSNSMRGSLNLRIHRVGDDKPMENTVD-NASSGT-AS 589

Query: 599 SSQNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQT 658
           SSQNDR  YQPE  IDMK+RYVGHCNVGTDIKQASFLGQRG+YIASGSDDGRWFIWEKQT
Sbjct: 590 SSQNDRTSYQPEGAIDMKRRYVGHCNVGTDIKQASFLGQRGEYIASGSDDGRWFIWEKQT 649

Query: 659 ------------VVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSIVSGGAAGPDTADV 706
                       V+NC+QCHPFD VVATSGIDNTIKIW+P+ASVPSIV+GG+AGP TA+V
Sbjct: 650 GRLMKVLVGDESVLNCIQCHPFDSVVATSGIDNTIKIWSPTASVPSIVAGGSAGPATANV 709

Query: 707 LEAMESNQRKLSRNREHSLSYELLERFHMHEFSEGSLRPFECAQS 751
           +E MESNQ+KLSRNRE+ LS EL++RF M EF+EG+  PFEC QS
Sbjct: 710 VEVMESNQQKLSRNRENPLSVELMQRFRMQEFAEGNFHPFECTQS 754

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18416416|ref|NP_568242.1| WD and tetratricopeptide repeats protein 1 [Arabidopsis thaliana] gi|14532680|gb|AAK64141.1| unknown protein [Arabidopsis thaliana] gi|23297429|gb|AAN12885.1| unknown protein [Arabidopsis thaliana] gi|332004228|gb|AED91611.1| WD and tetratricopeptide repeats protein 1 [Arabidopsis thaliana]

 Score = 1098 bits (2840), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 540/767 (70%), Positives = 622/767 (81%), Gaps = 26/767 (3%)

Query: 1   MENFPFHDGSIYDMLDTRHTDTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNS 60
           M+N  FHDG+I+++L TR  D   +V+  +Q HSSLVRRLSQE+ELEGHQGCVNA++WNS
Sbjct: 1   MDNLSFHDGNIFNLLHTRSQDPSHEVDQRMQFHSSLVRRLSQEQELEGHQGCVNALAWNS 60

Query: 61  KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR 120
            GSLLISGSDD  IN+W+YSSRKLLHSI+TGH+AN+FCTKFVPETSDELVVSGAGDAEVR
Sbjct: 61  NGSLLISGSDDLRINIWNYSSRKLLHSIDTGHTANIFCTKFVPETSDELVVSGAGDAEVR 120

Query: 121 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQG 180
           LFN SR SGR  DDNAI PSALYQCHTRRVKKLAVE GNP+VVWSASEDGTLRQHDFR+ 
Sbjct: 121 LFNTSRLSGRAEDDNAIIPSALYQCHTRRVKKLAVEPGNPNVVWSASEDGTLRQHDFRES 180

Query: 181 SSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFA 240
           +SCPPAG++HQECR++LLDLR GAKR+LADPPKQTLSLKSCDIS+TRPHLLLVGGSDAFA
Sbjct: 181 TSCPPAGTAHQECRSVLLDLRSGAKRALADPPKQTLSLKSCDISATRPHLLLVGGSDAFA 240

Query: 241 RLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG 300
           RLYDRRMLPPL S +KRM PPPCVNYFCPMHLSE GR++LHLTHVTFSPNGEEVLLSYSG
Sbjct: 241 RLYDRRMLPPLASSRKRMPPPPCVNYFCPMHLSERGRTNLHLTHVTFSPNGEEVLLSYSG 300

Query: 301 EHVYLMDVNHA--GGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGEVAT 358
           EHVYLM+VN+       M+YT GD   + SF+  L+ +E  P +    Q     R   A 
Sbjct: 301 EHVYLMNVNNGICSTGIMQYTPGDVDNLFSFSNNLHDVESPPQVSTTPQNGFH-RSSNAA 359

Query: 359 GLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRK 418
            + KC  LVEIA+ SLEEG   +Y IEA NEVL+ H + I   LRHECLC RAALLLKRK
Sbjct: 360 TVKKCTELVEIAKWSLEEGTDVFYAIEAANEVLDAHSNDIESALRHECLCTRAALLLKRK 419

Query: 419 WKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMA 478
           WKNDA MA+RDC+NARRID+SSF+AH YMSEAL+QL K KEALDFA AAQ ++PS++ + 
Sbjct: 420 WKNDAHMAVRDCHNARRIDASSFKAHYYMSEALQQLGKCKEALDFATAAQHMNPSDADIV 479

Query: 479 EKVENIKKHIAAAETEKNNKANDGGARSEPRTGRVLSLSDIIYRSEANSDASQDGPRSER 538
            KVE+IK+ + AA  EKN +   G       T RVLSLSDI+YRSEANSD+S D  RSER
Sbjct: 480 AKVESIKRDLQAAGAEKNEETGAG-------TTRVLSLSDILYRSEANSDSSHDMSRSER 532

Query: 539 EDSDYDEEVEVDFHTSVPGDEGRDVEANFLHGSLNVRIHRRGDSA--RETVDANGSSGSP 596
           EDSDYDEE+E+D  TS+  DEGRD ++N + GSLN+RIHR GD      TVD N SSG+ 
Sbjct: 533 EDSDYDEELELDIQTSLSDDEGRDTDSNSMRGSLNLRIHRVGDDKPMENTVD-NASSGT- 590

Query: 597 SSSSQNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEK 656
           +SSSQNDR  YQPE  IDMK+RYVGHCNVGTDIKQASFLGQRG+YIASGSDDGRWFIWEK
Sbjct: 591 ASSSQNDRTSYQPEGAIDMKRRYVGHCNVGTDIKQASFLGQRGEYIASGSDDGRWFIWEK 650

Query: 657 QT------------VVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSIVSGGAAGPDTA 704
           QT            V+NC+QCHPFD VVATSGIDNTIKIW+P+ASVPSIV+GG+AGP TA
Sbjct: 651 QTGRLMKVLVGDESVLNCIQCHPFDSVVATSGIDNTIKIWSPTASVPSIVAGGSAGPATA 710

Query: 705 DVLEAMESNQRKLSRNREHSLSYELLERFHMHEFSEGSLRPFECAQS 751
           +V+E MESNQ+KLSRNRE+ LS EL++RF M EF+EG+  PFEC QS
Sbjct: 711 NVVEVMESNQQKLSRNRENPLSVELMQRFRMQEFAEGNFHPFECTQS 757

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357465333|ref|XP_003602948.1| DDB1- and CUL4-associated factor [Medicago truncatula] gi|355491996|gb|AES73199.1| DDB1- and CUL4-associated factor [Medicago truncatula]

 Score = 1097 bits (2838), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 542/767 (70%), Positives = 629/767 (82%), Gaps = 25/767 (3%)

Query: 1   MENFPFHDGSIYDMLDTRHTDTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNS 60
           M++ PF DG+I+ +LD+R+  +RPDVN SLQ HSSL+RRLSQE+ELEGH GCVNAI+WNS
Sbjct: 1   MDSSPFLDGNIHRILDSRYLHSRPDVNQSLQTHSSLIRRLSQEKELEGHLGCVNAIAWNS 60

Query: 61  KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR 120
           KGSLL+SGSDDT INVWSY+ +KL+HSI+TGH+AN+FCTKF+PETSDELV SGAGDAEVR
Sbjct: 61  KGSLLVSGSDDTRINVWSYAGQKLVHSIDTGHTANIFCTKFIPETSDELVASGAGDAEVR 120

Query: 121 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQG 180
           LFN SR SG GL+DN ITPSALYQCHTRRVKKL VE GNP+VVWSASEDGTLRQHDFR+G
Sbjct: 121 LFNRSRVSGNGLNDNPITPSALYQCHTRRVKKL-VENGNPNVVWSASEDGTLRQHDFREG 179

Query: 181 SSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFA 240
           +SCPPAGS  QEC N+LLDLR GAKRSL DPPKQ L+LKS DISSTRPHLLLVGGSDAFA
Sbjct: 180 TSCPPAGSPRQECHNVLLDLRNGAKRSLGDPPKQVLALKSFDISSTRPHLLLVGGSDAFA 239

Query: 241 RLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG 300
           RLYDRRMLPPL+SC KRM PPPCVNYFCPMHLS+ G  SLHLTHVTFSP+G EVLLSYSG
Sbjct: 240 RLYDRRMLPPLSSCGKRMPPPPCVNYFCPMHLSDRGHPSLHLTHVTFSPDGSEVLLSYSG 299

Query: 301 EHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGEVATGL 360
           EHVYLM+VNHAG   ++Y+ GD SK+M+++P++NGLELQP + +        +  +   L
Sbjct: 300 EHVYLMNVNHAGVNEVQYSSGDVSKLMTYSPSVNGLELQPFVSNVFTNGFHTKKNITAKL 359

Query: 361 GKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWK 420
            KCR L++  + SL+EG  PYYGIEACNEVL G+   IGP L+ ECLC RAALLLKRKWK
Sbjct: 360 DKCRKLIKYGKKSLDEGA-PYYGIEACNEVLIGYNHIIGPALKQECLCTRAALLLKRKWK 418

Query: 421 NDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEK 480
           NDA MAIRDC+ AR+ D S+++   YMSEAL QL K+KEALDFA+A+  L PS S +AE+
Sbjct: 419 NDAHMAIRDCHAARKFDKSAYKPLYYMSEALSQLGKHKEALDFAVASHSLAPSKSEVAER 478

Query: 481 VENIKKHIAAAETEKNNKANDGGARSEPRTGRVLSLSDIIYRSEANSDASQDGPRSERED 540
           VEN KK I  AETEKN+K N+G      R GR+LSLSDI+YRSEANSD SQDG RS+R+D
Sbjct: 479 VENAKKDIVLAETEKNSKTNNG------RGGRMLSLSDILYRSEANSDTSQDGQRSDRDD 532

Query: 541 SDYDEEVEVDFHTSVPGDEGRDVEANFLHGSLNVRIHRRGDSARETVDA--NGSSGSPSS 598
           SDY+EE+E+DF TSV GDE  D ++N LH SLN+RIHRRGDS RE V+A  +  S S SS
Sbjct: 533 SDYEEEMELDFETSVSGDEEHDSDSNILHRSLNLRIHRRGDS-RENVEASGSDESPSSSS 591

Query: 599 SSQNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQT 658
           SSQN R  YQPE  IDMKQR++GHCNVGTDIKQA+FLGQ+G+Y+ASGSDDGRWFIWEK+T
Sbjct: 592 SSQNGRASYQPEAAIDMKQRFIGHCNVGTDIKQANFLGQKGEYVASGSDDGRWFIWEKRT 651

Query: 659 ------------VVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSIVSGGAAGPDTADV 706
                       VVNCVQCHPFD VVATSGIDNTIKIWTPSA V S V+GG+AGP+T DV
Sbjct: 652 GRLMKLLSGDESVVNCVQCHPFDFVVATSGIDNTIKIWTPSAPVASSVAGGSAGPETGDV 711

Query: 707 LEAMESNQRKLSRNREHSLSYELLERFHMHEFSEGS--LRPFECAQS 751
           L AME+NQ+KLSRNR+  L +ELLE F MHEF EGS  LRPFECAQ+
Sbjct: 712 LGAMENNQQKLSRNRDSMLPFELLEPFRMHEFPEGSLRLRPFECAQT 758

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356515704|ref|XP_003526538.1| PREDICTED: WD and tetratricopeptide repeats protein 1-like [Glycine max]

 Score = 1088 bits (2813), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 537/766 (70%), Positives = 633/766 (82%), Gaps = 19/766 (2%)

Query: 1   MENFPFHDGSIYDMLDTRHTDTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNS 60
           M++ PF DG+I+ +LD+R+  +  DVNHSL  HSSL+RRLSQERELEGH GCVNA++WNS
Sbjct: 1   MDSVPFRDGNIHTILDSRYLHSPLDVNHSLHTHSSLIRRLSQERELEGHTGCVNAVAWNS 60

Query: 61  KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR 120
           KGSLLISGSDD  IN+WSYS  KLLHSI+TGH+AN+FCTKF+PETSDELV SGAGDAEVR
Sbjct: 61  KGSLLISGSDDQRINIWSYSGWKLLHSIDTGHTANIFCTKFIPETSDELVASGAGDAEVR 120

Query: 121 LFNLSRFSGRGLDDNAI-TPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQ 179
           LFNLSR +G G  DNAI  PSA YQCHTRRVKKLAVE GNP+VVWSASEDGTLRQHDFR+
Sbjct: 121 LFNLSRLNGSGFSDNAIIAPSAYYQCHTRRVKKLAVENGNPNVVWSASEDGTLRQHDFRE 180

Query: 180 GSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAF 239
           G+SCPPAGSSHQECRNILLDLR G+KRSLADPPKQ L+LKSCDISST+PHLLLVGGSDAF
Sbjct: 181 GTSCPPAGSSHQECRNILLDLRSGSKRSLADPPKQVLALKSCDISSTKPHLLLVGGSDAF 240

Query: 240 ARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS 299
           ARLYDRRMLPPL+SCQKRMSPPPCVNYFCPMHLS+ G  SLHLTHVTFSP+G EVLLSYS
Sbjct: 241 ARLYDRRMLPPLSSCQKRMSPPPCVNYFCPMHLSDRGHPSLHLTHVTFSPDGHEVLLSYS 300

Query: 300 GEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGEVATG 359
           GEHVYLM+VNHAG + M+YT GD SK+M+++PT+NG E+QP + +       ++  +A  
Sbjct: 301 GEHVYLMNVNHAGVKEMQYTSGDESKLMTYSPTINGSEMQPCVSNVFPNRFPIKKNIAAK 360

Query: 360 LGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKW 419
           L KCR  ++ A+ SL+ G  PYYGI+ACNEVL G+   IGP L+HECLC RAALL+KRKW
Sbjct: 361 LDKCRKQIKYAKKSLDNGI-PYYGIDACNEVLNGYSHIIGPALKHECLCTRAALLVKRKW 419

Query: 420 KNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAE 479
           KNDA MAIRDCY AR ID+SS++A  YMSEAL QL ++++AL+FA+A+  L PS S +AE
Sbjct: 420 KNDAHMAIRDCYAARIIDNSSYKALYYMSEALSQLGRHEDALEFAVASHSLAPSKSEVAE 479

Query: 480 KVENIKKHIAAAETEKNNKANDGGARSEPRTGRVLSLSDIIYRSEANSDASQDGPRSERE 539
           +V N+K+ IA AE EKN++ NDG +R + R GR+LSLSDI+Y  E+NSD   DG RSER+
Sbjct: 480 RVANVKRDIALAEAEKNSQTNDGASRFDSRGGRILSLSDILYCPESNSDDPHDGSRSERD 539

Query: 540 DSDYDEEVEVDFHTSVPGDEGRDVEANFLHGSLNVRIHRRGDSARETVDANGSSGSPSSS 599
           DSDYD+E+E+DF TS+ GDEG D+E+N LHG+LN+RIH RGDS R+  DA+GS  SPSSS
Sbjct: 540 DSDYDDELELDFETSISGDEGHDLESNILHGNLNLRIHGRGDS-RDNADASGSCESPSSS 598

Query: 600 SQNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEK--- 656
           SQN R  YQPE  +DMKQR+VGHCN+GTDIKQASFLGQRG+Y+ASGSDDGRWFIWEK   
Sbjct: 599 SQNSRTSYQPEPAVDMKQRFVGHCNIGTDIKQASFLGQRGEYVASGSDDGRWFIWEKCTG 658

Query: 657 ---------QTVVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSIVSGGAAGPDTADVL 707
                    ++VVNCVQCHPFD VVATSGID+TIKIWTP+A VPS V+GG+AGP+T DVL
Sbjct: 659 RLIKMLSGDESVVNCVQCHPFDFVVATSGIDSTIKIWTPTAPVPSSVAGGSAGPETGDVL 718

Query: 708 EAMESNQRKLSRNREHSLSYELLERFHMHEFSEGSLR--PFECAQS 751
            AMESNQ+KLSR+  H+    LLE F   +F EGSLR  PFECAQS
Sbjct: 719 VAMESNQQKLSRS--HNSILPLLESFRRQDFPEGSLRLHPFECAQS 762

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356508017|ref|XP_003522759.1| PREDICTED: WD and tetratricopeptide repeats protein 1-like [Glycine max]

 Score = 1082 bits (2799), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 536/766 (69%), Positives = 627/766 (81%), Gaps = 19/766 (2%)

Query: 1   MENFPFHDGSIYDMLDTRHTDTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNS 60
           M++ PF DGSI+ +LD+R+  +  DV+HSL  HSSL+RRLSQE ELEGH GCVNA++WNS
Sbjct: 1   MDSVPFRDGSIHTILDSRYFHSPLDVSHSLHTHSSLIRRLSQETELEGHTGCVNAVAWNS 60

Query: 61  KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR 120
           KGS+LISGSDD  IN+WSYS  KLLHSI+TGH+AN+FCTKF+PETSDELV SGAGDA VR
Sbjct: 61  KGSILISGSDDLRINIWSYSGWKLLHSIDTGHTANIFCTKFIPETSDELVASGAGDAGVR 120

Query: 121 LFNLSRFSGRGLDDNAI-TPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQ 179
           LFNLSR SG G  DNAI  PSA YQCHTRRVKKLAVE GNP+VVWSASEDGTLRQHDFR+
Sbjct: 121 LFNLSRLSGSGFSDNAIIAPSAHYQCHTRRVKKLAVENGNPNVVWSASEDGTLRQHDFRE 180

Query: 180 GSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAF 239
           G+SCPPAGSSHQECRNILLDLR G+KRSLADPPKQ L+LKSCDISSTRPHLLLVGGSDAF
Sbjct: 181 GTSCPPAGSSHQECRNILLDLRSGSKRSLADPPKQVLALKSCDISSTRPHLLLVGGSDAF 240

Query: 240 ARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS 299
           ARLYDRRMLPPL+SC KRMSPPPCVNYFCPMHLS+HG  SLHLTHVTFSP+G EVLLSYS
Sbjct: 241 ARLYDRRMLPPLSSCWKRMSPPPCVNYFCPMHLSDHGHPSLHLTHVTFSPDGHEVLLSYS 300

Query: 300 GEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGEVATG 359
           GEHVYLM+VNHAG   M+YT GD SK+M+++PT+NG E+QP + +       ++  +A  
Sbjct: 301 GEHVYLMNVNHAGVNEMQYTSGDNSKLMTYSPTINGTEMQPCVSNVFPNGFPIKKNIAAK 360

Query: 360 LGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKW 419
           L KCR L++ A+ SL+ G  PYYGI+ACNEVL G+   IGP L+HECLC RAALL+KRKW
Sbjct: 361 LDKCRKLIKYAKKSLDNGT-PYYGIDACNEVLNGYSHIIGPALKHECLCTRAALLVKRKW 419

Query: 420 KNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAE 479
           KNDA M IRDCY AR ID+SS++A  YMSEAL QL ++++AL+FA+A+  L PS S +AE
Sbjct: 420 KNDAHMVIRDCYAAREIDNSSYKALYYMSEALSQLGRHEDALEFAVASHSLAPSKSEVAE 479

Query: 480 KVENIKKHIAAAETEKNNKANDGGARSEPRTGRVLSLSDIIYRSEANSDASQDGPRSERE 539
           +V N+K+ IA AE EK++K NDG +R + R GR+LSLSDI+YR  +N D  QDG R ER+
Sbjct: 480 RVANVKRDIALAEAEKSSKTNDGASRFDSRGGRILSLSDILYRPGSNGDPPQDGSRLERD 539

Query: 540 DSDYDEEVEVDFHTSVPGDEGRDVEANFLHGSLNVRIHRRGDSARETVDANGSSGSPSSS 599
           DSDYDEE+E+DF TS+ GDE  D+E+N LHGSLN+RIHRRGDS R+   A+GS  SPSSS
Sbjct: 540 DSDYDEELELDFETSISGDEEHDLESNILHGSLNLRIHRRGDS-RDNARASGSCESPSSS 598

Query: 600 SQNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQT- 658
           SQN R  YQPE  +DMKQR+VGHCN+GTDIKQASFLGQRG+Y+ASGSDDGRW+IWEK+T 
Sbjct: 599 SQNSRTSYQPEPAVDMKQRFVGHCNIGTDIKQASFLGQRGEYVASGSDDGRWYIWEKRTG 658

Query: 659 -----------VVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSIVSGGAAGPDTADVL 707
                      VVNCVQCHPFD VVATSGID+TIKIWTP+A VPS V+GG+AGP+T DVL
Sbjct: 659 RLIKMLNGDESVVNCVQCHPFDFVVATSGIDSTIKIWTPNAPVPSSVAGGSAGPETGDVL 718

Query: 708 EAMESNQRKLSRNREHSLSYELLERFHMHEFSEGS--LRPFECAQS 751
            AMESNQ+KLSR+    L +  LE F M EF EG   LRPFECAQS
Sbjct: 719 VAMESNQQKLSRSHNSILPF--LEPFRMQEFPEGPLRLRPFECAQS 762

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	751
TAIR|locus:2183735	757	ASG2 "AT5G10940" [Arabidopsis	0.986	0.978	0.670	1.7e-272
UNIPROTKB|Q8N5D0	677	WDTC1 "WD and tetratricopeptid	0.551	0.611	0.298	1.8e-58
UNIPROTKB|E2RA21	679	WDTC1 "Uncharacterized protein	0.551	0.609	0.298	1.9e-58
MGI|MGI:2685541	677	Wdtc1 "WD and tetratricopeptid	0.332	0.369	0.344	2.3e-58
UNIPROTKB|B6CVL4	678	WDTC1 "Uncharacterized protein	0.551	0.610	0.298	3e-58
RGD|1310362	676	Wdtc1 "WD and tetratricopeptid	0.332	0.369	0.341	5.4e-58
UNIPROTKB|E1C4X5	671	WDTC1 "Uncharacterized protein	0.340	0.381	0.327	1.3e-56
FB|FBgn0000057	628	adp "adipose" [Drosophila mela	0.226	0.270	0.368	1.2e-52
POMBASE|SPBC609.03	809	iqw1 "WD repeat protein, Iqw1"	0.407	0.378	0.307	9.9e-45
UNIPROTKB|F1NU19	825	F1NU19 "Uncharacterized protei	0.238	0.216	0.338	4.3e-42

TAIR|locus:2183735 ASG2 "AT5G10940" [Arabidopsis thaliana (taxid:3702)]

 Score = 2620 (927.3 bits), Expect = 1.7e-272, P = 1.7e-272
 Identities = 514/767 (67%), Positives = 591/767 (77%)

Query:     1 MENFPFHDGSIYDMLDTRHTDTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNS 60
             M+N  FHDG+I+++L TR  D   +V+  +Q HSSLVRRLSQE+ELEGHQGCVNA++WNS
Sbjct:     1 MDNLSFHDGNIFNLLHTRSQDPSHEVDQRMQFHSSLVRRLSQEQELEGHQGCVNALAWNS 60

Query:    61 KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR 120
              GSLLISGSDD  IN+W+YSSRKLLHSI+TGH+AN+FCTKFVPETSDELVVSGAGDAEVR
Sbjct:    61 NGSLLISGSDDLRINIWNYSSRKLLHSIDTGHTANIFCTKFVPETSDELVVSGAGDAEVR 120

Query:   121 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQG 180
             LFN SR SGR  DDNAI PSALYQCHTRRVKKLAVE GNP+VVWSASEDGTLRQHDFR+ 
Sbjct:   121 LFNTSRLSGRAEDDNAIIPSALYQCHTRRVKKLAVEPGNPNVVWSASEDGTLRQHDFRES 180

Query:   181 SSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFA 240
             +SCPPAG++HQECR++LLDLR GAKR+LADPPKQTLSLKSCDIS+TRPHLLLVGGSDAFA
Sbjct:   181 TSCPPAGTAHQECRSVLLDLRSGAKRALADPPKQTLSLKSCDISATRPHLLLVGGSDAFA 240

Query:   241 RLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG 300
             RLYDRRMLPPL S +KRM PPPCVNYFCPMHLSE GR++LHLTHVTFSPNGEEVLLSYSG
Sbjct:   241 RLYDRRMLPPLASSRKRMPPPPCVNYFCPMHLSERGRTNLHLTHVTFSPNGEEVLLSYSG 300

Query:   301 EHVYLMDVNHA--GGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGEVAT 358
             EHVYLM+VN+       M+YT GD   + SF+  L+ +E  P +    Q         AT
Sbjct:   301 EHVYLMNVNNGICSTGIMQYTPGDVDNLFSFSNNLHDVESPPQVSTTPQNGFHRSSNAAT 360

Query:   359 GLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRK 418
              + KC  LVEIA+ SLEEG   +Y IEA NEVL+ H + I   LRHECLC RAALLLKRK
Sbjct:   361 -VKKCTELVEIAKWSLEEGTDVFYAIEAANEVLDAHSNDIESALRHECLCTRAALLLKRK 419

Query:   419 WKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMA 478
             WKNDA MA+RDC+NARRID+SSF+AH YMSEAL+QL K KEALDFA AAQ ++PS++ + 
Sbjct:   420 WKNDAHMAVRDCHNARRIDASSFKAHYYMSEALQQLGKCKEALDFATAAQHMNPSDADIV 479

Query:   479 EKVENIKKHIXXXXXXXXXXXXDGGARSEPRTGRVLSLSDIIYRSEANSDASQDGPXXXX 538
              KVE+IK+ +             G       T RVLSLSDI+YRSEANSD+S D      
Sbjct:   480 AKVESIKRDLQAAGAEKNEETGAG-------TTRVLSLSDILYRSEANSDSSHDMSRSER 532

Query:   539 XXXXXXXXXXXXFHTSVPGDEGRDVEANFLHGSLNVRIHRRGDSA--RETVDANXXXXXX 596
                           TS+  DEGRD ++N + GSLN+RIHR GD      TVD        
Sbjct:   533 EDSDYDEELELDIQTSLSDDEGRDTDSNSMRGSLNLRIHRVGDDKPMENTVD--NASSGT 590

Query:   597 XXXXQNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEK 656
                 QNDR  YQPE  IDMK+RYVGHCNVGTDIKQASFLGQRG+YIASGSDDGRWFIWEK
Sbjct:   591 ASSSQNDRTSYQPEGAIDMKRRYVGHCNVGTDIKQASFLGQRGEYIASGSDDGRWFIWEK 650

Query:   657 QT------------VVNCVQCHPFDCVVATSGIDNTIKIWTPSASVPSIVSGGAAGPDTA 704
             QT            V+NC+QCHPFD VVATSGIDNTIKIW+P+ASVPSIV+GG+AGP TA
Sbjct:   651 QTGRLMKVLVGDESVLNCIQCHPFDSVVATSGIDNTIKIWSPTASVPSIVAGGSAGPATA 710

Query:   705 DVLEAMESNQRKLSRNREHSLSYELLERFHMHEFSEGSLRPFECAQS 751
             +V+E MESNQ+KLSRNRE+ LS EL++RF M EF+EG+  PFEC QS
Sbjct:   711 NVVEVMESNQQKLSRNRENPLSVELMQRFRMQEFAEGNFHPFECTQS 757

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

GO:0009506 "plasmodesma" evidence=IDA

GO:0000956 "nuclear-transcribed mRNA catabolic process" evidence=RCA

GO:0006346 "methylation-dependent chromatin silencing" evidence=RCA

GO:0007062 "sister chromatid cohesion" evidence=RCA

GO:0009630 "gravitropism" evidence=RCA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0016246 "RNA interference" evidence=RCA

GO:0031048 "chromatin silencing by small RNA" evidence=RCA

GO:0045132 "meiotic chromosome segregation" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

UNIPROTKB|Q8N5D0 WDTC1 "WD and tetratricopeptide repeats protein 1" [Homo sapiens (taxid:9606)]

 Score = 427 (155.4 bits), Expect = 1.8e-58, Sum P(2) = 1.8e-58
 Identities = 140/469 (29%), Positives = 210/469 (44%)

Query:    37 VRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANV 96
             +RRL  E EL+GH GCVN + WN KG LL SGSDD H  VW     K L S+ TGH+AN+
Sbjct:    34 IRRLGLEAELQGHSGCVNCLEWNEKGDLLASGSDDQHTIVWDPLHHKKLLSMHTGHTANI 93

Query:    97 FCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVE 156
             F  KF+P   D ++++GA D++V + +L+      + +       ++  HT RVK++A  
Sbjct:    94 FSVKFLPHAGDRILITGAADSKVHVHDLT------VKETI----HMFGDHTNRVKRIATA 143

Query:   157 VGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLR--CGA---KRSLADP 211
                P+  WSA+EDG +RQ+D R+ S        H E   +L+DL   CG     + L   
Sbjct:   144 PMWPNTFWSAAEDGLIRQYDLRENSK-------HSE---VLIDLTEYCGQLVEAKCLTVN 193

Query:   212 PKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPL---TSCQKRMS-PPPCVNYF 267
             P+    L    + ++ P + L             +  P     T C ++   P     Y+
Sbjct:   194 PQDNNCLA---VGASGPFVRLYDIRMIHNHRKSMKQSPSAGVHTFCDRQKPLPDGAAQYY 250

Query:   268 C----PMHLSEHGRSS--LHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVG 321
                  P+ L ++      L  T+VTFSPNG E+L++  GE VYL D+ +   +   YT  
Sbjct:   251 VAGHLPVKLPDYNNRLRVLVATYVTFSPNGTELLVNMGGEQVYLFDLTY---KQRPYTFL 307

Query:   322 DASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGE---VATGLGKCRMLVEIARNSLEEGK 378
                K  S     NG      + + +   + +      +    G     VE+    LE  K
Sbjct:   308 LPRKCHSSGEVQNGKMSTNGVSNGVSNGLHLHSNGFRLPESRGHVSPQVELPPY-LERVK 366

Query:   379 HPYYGIEACNEVLEG-HL-SGIGPMLRHECLCI--RAALLLKRKWKNDAQMAIRDCYNAR 434
                    AC +  +   L S       H  +    RAA  +KRKW  D   A+RDC  A 
Sbjct:   367 QQANEAFACQQWTQAIQLYSKAVQRAPHNAMLYGNRAAAYMKRKWDGDHYDALRDCLKAI 426

Query:   435 RIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVEN 483
              ++    +AH  ++  L +L KY      A A +CLD       E+  +
Sbjct:   427 SLNPCHLKAHFRLARCLFEL-KY-----VAEALECLDDFKGKFPEQAHS 469

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0004857 "enzyme inhibitor activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0006006 "glucose metabolic process" evidence=IEA

GO:0008361 "regulation of cell size" evidence=IEA

GO:0032869 "cellular response to insulin stimulus" evidence=IEA

GO:0035264 "multicellular organism growth" evidence=IEA

GO:0042393 "histone binding" evidence=IEA

GO:0042826 "histone deacetylase binding" evidence=IEA

GO:0045717 "negative regulation of fatty acid biosynthetic process" evidence=IEA

GO:0055082 "cellular chemical homeostasis" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

UNIPROTKB|E2RA21 WDTC1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 427 (155.4 bits), Expect = 1.9e-58, Sum P(2) = 1.9e-58
 Identities = 140/469 (29%), Positives = 210/469 (44%)

Query:    37 VRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANV 96
             +RRL  E EL+GH GCVN + WN KG LL SGSDD H  VW     K L S+ TGH+AN+
Sbjct:    34 IRRLGLEAELQGHSGCVNCLEWNEKGDLLASGSDDQHTIVWDPLHHKKLLSMHTGHTANI 93

Query:    97 FCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVE 156
             F  KF+P   D ++++GA D++V + +L+      + +       ++  HT RVK++A  
Sbjct:    94 FSVKFLPHAGDRILITGAADSKVHVHDLT------VKETI----HMFGDHTNRVKRIATA 143

Query:   157 VGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLR--CGA---KRSLADP 211
                P+  WSA+EDG +RQ+D R+ S        H E   +L+DL   CG     + L   
Sbjct:   144 PMWPNTFWSAAEDGLIRQYDLRENSK-------HSE---VLIDLTEYCGQLVEAKCLTVN 193

Query:   212 PKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPL---TSCQKRMS-PPPCVNYF 267
             P+    L    + ++ P + L             +  P     T C ++   P     Y+
Sbjct:   194 PQDNNCLA---VGASGPFVRLYDIRMIHNHRKSMKQSPSAGVHTFCDRQKPLPDGAAQYY 250

Query:   268 C----PMHLSEHGRSS--LHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVG 321
                  P+ L ++      L  T+VTFSPNG E+L++  GE VYL D+ +   +   YT  
Sbjct:   251 VAGHLPVKLPDYNNRLRVLVATYVTFSPNGTELLVNMGGEQVYLFDLTY---KQRPYTFL 307

Query:   322 DASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGE---VATGLGKCRMLVEIARNSLEEGK 378
                K  S     NG      + + +   + +      +    G     VE+    LE  K
Sbjct:   308 LPRKCHSSGEVQNGKMSTNGVSNGVSNGLHLHSNGFRLPENRGHVSPQVELPPY-LERVK 366

Query:   379 HPYYGIEACNEVLEG-HL-SGIGPMLRHECLCI--RAALLLKRKWKNDAQMAIRDCYNAR 434
                    AC +  +   L S       H  +    RAA  +KRKW  D   A+RDC  A 
Sbjct:   367 QQANEAFACQQWTQAIQLYSKAVQRAPHNAMLYGNRAAAYMKRKWDGDHYDALRDCLKAI 426

Query:   435 RIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVEN 483
              ++    +AH  ++  L +L KY      A A +CLD       E+  +
Sbjct:   427 SLNPCHLKAHFRLARCLFEL-KY-----VAEALECLDDFKGKFPEQAHS 469

GO:0055082 "cellular chemical homeostasis" evidence=IEA

GO:0045717 "negative regulation of fatty acid biosynthetic process" evidence=IEA

GO:0042826 "histone deacetylase binding" evidence=IEA

GO:0042393 "histone binding" evidence=IEA

GO:0035264 "multicellular organism growth" evidence=IEA

GO:0032869 "cellular response to insulin stimulus" evidence=IEA

GO:0008361 "regulation of cell size" evidence=IEA

GO:0006006 "glucose metabolic process" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0004857 "enzyme inhibitor activity" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

MGI|MGI:2685541 Wdtc1 "WD and tetratricopeptide repeats 1" [Mus musculus (taxid:10090)]

 Score = 375 (137.1 bits), Expect = 2.3e-58, Sum P(3) = 2.3e-58
 Identities = 100/290 (34%), Positives = 148/290 (51%)

Query:    37 VRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANV 96
             +RRL  E EL+GH GCVN + WN KG LL SGSDD H  VW     K L S+ TGH+AN+
Sbjct:    34 IRRLGLEAELQGHSGCVNCLEWNEKGDLLASGSDDQHTIVWDPLHHKKLLSMHTGHTANI 93

Query:    97 FCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVE 156
             F  KF+P   D ++++GA D++V + +L+      + +       ++  HT RVK++A  
Sbjct:    94 FSVKFLPHAGDRILITGAADSKVHVHDLT------VKETI----HMFGDHTNRVKRIATA 143

Query:   157 VGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLR--CGAK---RSLADP 211
                P+  WSA+EDG +RQ+D R+ S        H E   +L+DL   CG     + L   
Sbjct:   144 PMWPNTFWSAAEDGLIRQYDLRENSK-------HSE---VLIDLTEYCGPMVEAKCLTVN 193

Query:   212 PKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPL---TSCQKRMS-PPPCVNYF 267
             P+    L    + ++ P + L             R  P     T C ++   P     Y+
Sbjct:   194 PQDNNCLA---VGASGPFVRLYDIRMIHNHRKSMRQSPSAGVHTFCDRQKPLPDGAAQYY 250

Query:   268 C----PMHLSEHGRSSLHL---THVTFSPNGEEVLLSYSGEHVYLMDVNH 310
                  P+ L ++  S L +   T+VTFSPNG E+L++  GE VYL D+ +
Sbjct:   251 VAGHLPVKLPDYN-SRLRVLVATYVTFSPNGTELLVNMGGEQVYLFDLTY 299

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IDA

GO:0001701 "in utero embryonic development" evidence=IMP

GO:0004857 "enzyme inhibitor activity" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006006 "glucose metabolic process" evidence=IMP

GO:0008361 "regulation of cell size" evidence=IMP

GO:0032869 "cellular response to insulin stimulus" evidence=IMP

GO:0035264 "multicellular organism growth" evidence=IMP

GO:0042393 "histone binding" evidence=IPI

GO:0042826 "histone deacetylase binding" evidence=IPI

GO:0043086 "negative regulation of catalytic activity" evidence=IDA

GO:0045717 "negative regulation of fatty acid biosynthetic process" evidence=IMP;IDA

GO:0055082 "cellular chemical homeostasis" evidence=IMP

UNIPROTKB|B6CVL4 WDTC1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 427 (155.4 bits), Expect = 3.0e-58, Sum P(2) = 3.0e-58
 Identities = 140/469 (29%), Positives = 210/469 (44%)

Query:    37 VRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANV 96
             +RRL  E EL+GH GCVN + WN KG LL SGSDD H  VW     K L S+ TGH+AN+
Sbjct:    34 IRRLGLEAELQGHSGCVNCLEWNEKGDLLASGSDDQHTIVWDPLHHKKLLSMHTGHTANI 93

Query:    97 FCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVE 156
             F  KF+P   D ++++GA D++V + +L+      + +       ++  HT RVK++A  
Sbjct:    94 FSVKFLPHAGDRILITGAADSKVHVHDLT------VKETI----HMFGDHTNRVKRIATA 143

Query:   157 VGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLR--CGA---KRSLADP 211
                P+  WSA+EDG +RQ+D R+ S        H E   +L+DL   CG     + L   
Sbjct:   144 PMWPNTFWSAAEDGLIRQYDLRENSK-------HSE---VLIDLTEYCGQLVEAKCLTVN 193

Query:   212 PKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPL---TSCQKRMS-PPPCVNYF 267
             P+    L    + ++ P + L             +  P     T C ++   P     Y+
Sbjct:   194 PQDNNCLA---VGASGPFVRLYDIRMIHNHRKSMKQSPSAGVHTFCDRQKPLPDGAAQYY 250

Query:   268 C----PMHLSEHGRSS--LHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVG 321
                  P+ L ++      L  T+VTFSPNG E+L++  GE VYL D+ +   +   YT  
Sbjct:   251 VAGHLPVKLPDYNNRLRVLVATYVTFSPNGTELLVNMGGEQVYLFDLTY---KQRPYTFL 307

Query:   322 DASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGE---VATGLGKCRMLVEIARNSLEEGK 378
                K  S     NG      + + +   + +      +    G     VE+    LE  K
Sbjct:   308 LPRKCHSSGEVQNGKMSTNGVSNGVSNGLHLHSNGFRLPESRGHVSPQVELPPY-LERVK 366

Query:   379 HPYYGIEACNEVLEG-HL-SGIGPMLRHECLCI--RAALLLKRKWKNDAQMAIRDCYNAR 434
                    AC +  +   L S       H  +    RAA  +KRKW  D   A+RDC  A 
Sbjct:   367 QQANEAFACQQWTQAIQLYSKAVQRAPHNAMLYGNRAAAYMKRKWDGDHYDALRDCLKAI 426

Query:   435 RIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVEN 483
              ++    +AH  ++  L +L KY      A A +CLD       E+  +
Sbjct:   427 SLNPCHLKAHFRLARCLFEL-KY-----VAEALECLDDFKGKFPEQAHS 469

GO:0055082 "cellular chemical homeostasis" evidence=IEA

GO:0045717 "negative regulation of fatty acid biosynthetic process" evidence=IEA

GO:0042826 "histone deacetylase binding" evidence=IEA

GO:0042393 "histone binding" evidence=IEA

GO:0035264 "multicellular organism growth" evidence=IEA

GO:0032869 "cellular response to insulin stimulus" evidence=IEA

GO:0008361 "regulation of cell size" evidence=IEA

GO:0006006 "glucose metabolic process" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0004857 "enzyme inhibitor activity" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

RGD|1310362 Wdtc1 "WD and tetratricopeptide repeats 1" [Rattus norvegicus (taxid:10116)]

 Score = 372 (136.0 bits), Expect = 5.4e-58, Sum P(3) = 5.4e-58
 Identities = 99/290 (34%), Positives = 148/290 (51%)

Query:    37 VRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANV 96
             +RRL  E EL+GH GCVN + WN KG LL SGSDD H  VW     K L S+ TGH+AN+
Sbjct:    34 IRRLGLEAELQGHSGCVNCLEWNEKGDLLASGSDDQHTIVWDPLHHKKLLSMHTGHTANI 93

Query:    97 FCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVE 156
             F  KF+P   D ++++GA D++V + +L+      + +       ++  HT RVK++A  
Sbjct:    94 FSVKFLPHAGDRILITGAADSKVHVHDLT------VKETI----HMFGDHTNRVKRIATA 143

Query:   157 VGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLR--CGAK---RSLADP 211
                P+  WSA+EDG +RQ+D R+ S        H E   +L+DL   CG     + L   
Sbjct:   144 PMWPNTFWSAAEDGLIRQYDLRENSK-------HSE---VLIDLTEYCGPMVEAKCLTVN 193

Query:   212 PKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPL---TSCQKRMS-PPPCVNYF 267
             P+    L    + ++ P + L             +  P     T C ++   P     Y+
Sbjct:   194 PQDNNCLA---VGASGPFVRLYDIRMIHNHRKSMKQSPSAGVHTFCDRQKPLPDGAAQYY 250

Query:   268 C----PMHLSEHGRSSLHL---THVTFSPNGEEVLLSYSGEHVYLMDVNH 310
                  P+ L ++  S L +   T+VTFSPNG E+L++  GE VYL D+ +
Sbjct:   251 VAGHLPVKLPDYN-SRLRVLVATYVTFSPNGTELLVNMGGEQVYLFDLTY 299

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA;ISO

GO:0001701 "in utero embryonic development" evidence=IEA;ISO

GO:0004857 "enzyme inhibitor activity" evidence=IEA;ISO

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0005829 "cytosol" evidence=IEA;ISO

GO:0006006 "glucose metabolic process" evidence=IEA;ISO

GO:0008361 "regulation of cell size" evidence=IEA;ISO

GO:0032869 "cellular response to insulin stimulus" evidence=IEA;ISO

GO:0035264 "multicellular organism growth" evidence=IEA;ISO

GO:0042393 "histone binding" evidence=IEA;ISO

GO:0042826 "histone deacetylase binding" evidence=IEA;ISO

GO:0043086 "negative regulation of catalytic activity" evidence=ISO

GO:0043231 "intracellular membrane-bounded organelle" evidence=ISO

GO:0045717 "negative regulation of fatty acid biosynthetic process" evidence=IEA;ISO

GO:0055082 "cellular chemical homeostasis" evidence=IEA;ISO

UNIPROTKB|E1C4X5 WDTC1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 363 (132.8 bits), Expect = 1.3e-56, Sum P(3) = 1.3e-56
 Identities = 93/284 (32%), Positives = 143/284 (50%)

Query:    37 VRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANV 96
             +RRL  E EL+GH GCVN + WN KG LL SGSDD H  VW     K L S+ TGH+AN+
Sbjct:    34 IRRLGLEAELQGHSGCVNCLEWNEKGDLLASGSDDQHTIVWDPLHHKKLLSMHTGHTANI 93

Query:    97 FCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVE 156
             F  KF+P + D ++++GA D++V + +L+      + +       ++  HT RVK++A  
Sbjct:    94 FSVKFLPHSGDRILITGAADSKVHVHDLT------VKETI----HMFGDHTNRVKRIATA 143

Query:   157 VGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTL 216
                P+  WSA+EDG +RQ+D R+ S          E    L++ +C     L   P+   
Sbjct:   144 PMWPNTFWSAAEDGLIRQYDLRENSKRSEVLIDLTEYCGQLVEAKC-----LTVNPQDNN 198

Query:   217 SLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPL---TSCQKRMS-PPPCVNYFC---- 268
              L    + ++ P + L             +  P     T C ++   P     Y+     
Sbjct:   199 YLA---VGASGPFVRLYDIRMIHNHRKSMKQCPSAGVHTFCDRQKPLPDGAAQYYVAGHL 255

Query:   269 PMHLSEHGRSS--LHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH 310
             P+ L ++      L  T+VTFSP+G E+L++  GE VYL D+ +
Sbjct:   256 PVKLPDYNNRLRVLVATYVTFSPDGTELLVNMGGEQVYLFDLTY 299

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0004857 "enzyme inhibitor activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0006006 "glucose metabolic process" evidence=IEA

GO:0008361 "regulation of cell size" evidence=IEA

GO:0032869 "cellular response to insulin stimulus" evidence=IEA

GO:0035264 "multicellular organism growth" evidence=IEA

GO:0042393 "histone binding" evidence=IEA

GO:0042826 "histone deacetylase binding" evidence=IEA

GO:0045717 "negative regulation of fatty acid biosynthetic process" evidence=IEA

GO:0055082 "cellular chemical homeostasis" evidence=IEA

FB|FBgn0000057 adp "adipose" [Drosophila melanogaster (taxid:7227)]

 Score = 297 (109.6 bits), Expect = 1.2e-52, Sum P(3) = 1.2e-52
 Identities = 66/179 (36%), Positives = 94/179 (52%)

Query:    37 VRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANV 96
             V RL QE  L GH+GCVN + W + G  L SGSDD  + +W    +KL+H I T H  NV
Sbjct:    54 VDRLEQEAVLVGHEGCVNCLEWTTDGMWLASGSDDYRVMIWDPFRKKLVHVIRTKHLGNV 113

Query:    97 FCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVE 156
             F  KF+P+T++ +V + A D  + +++++       D N    S +  CH  R K+LA  
Sbjct:   114 FSVKFLPKTNNSIVATCAADKFIYVYDIN-------DPNETLFSCI--CHFSRAKRLATA 164

Query:   157 VGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQT 215
               +PHV WSA EDG + Q D R+   C P         N+   L     + LA  P++T
Sbjct:   165 QDSPHVFWSAGEDGCILQLDIREPHRCRPEEGIGVRLLNLHDQLENTEAKCLAINPRRT 223

GO:0005975 "carbohydrate metabolic process" evidence=TAS

GO:0006629 "lipid metabolic process" evidence=IMP;TAS

GO:0009269 "response to desiccation" evidence=IMP

GO:0010891 "negative regulation of sequestering of triglyceride" evidence=IMP

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0010883 "regulation of lipid storage" evidence=IMP

POMBASE|SPBC609.03 iqw1 "WD repeat protein, Iqw1" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 375 (137.1 bits), Expect = 9.9e-45, Sum P(2) = 9.9e-45
 Identities = 103/335 (30%), Positives = 169/335 (50%)

Query:    15 LDTRHTDTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHI 74
             LD R    R  ++  +  +S+ +  +  ++EL GH GCVN + W++ G  L+SGSDDT +
Sbjct:    11 LDYRDWFQRK-ISRDIYGNSTWLTGIDLQKELTGHTGCVNTLDWSADGEFLLSGSDDTRL 69

Query:    75 NVWS-YSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLD 133
              VW  ++  K  H I TGH  N+F  KFVP +++  ++S +GD  ++LF+L      G+D
Sbjct:    70 IVWDVFNEYKPRHLISTGHVQNIFSAKFVPYSNNRQILSASGDKLIKLFDLDSSKEGGMD 129

Query:   134 DNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQEC 193
                 T +  + C    VK + V   N H     SEDGT RQ+D R+   C    +   +C
Sbjct:   130 HGMETQTRCWSCALDSVKNI-VPCDNGHTFLVCSEDGTARQYDIREPHVC----NQDLDC 184

Query:   194 RNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTS 253
              +IL++          +P +  ++L +  +S + P+   +GG+  +A LYDRRM+     
Sbjct:   185 PSILVNY---------NPYR--INLYTITMSPSNPYYFAIGGTHPYAFLYDRRMVKKSFR 233

Query:   254 CQKRMSPPP-----CVNYFCPM-HLSEHGRSSLHLTHVTFSP-NGEEVLLSYSGEHVYLM 306
                 M+  P     CV  F P    +  G    ++T   FS  N  E+L+S++ ++VYL 
Sbjct:   234 DDWTMNTSPEKDCRCVRKFSPDGSCNSQGILDRYITCCQFSAANPNELLVSWNSDYVYLF 293

Query:   307 DVNHAGGRAMRYT-VGDASKIMSFTPTLNGLELQP 340
              V+        +  + D++K  S  P+L  L+ QP
Sbjct:   294 HVHEDKSYTPTFNKIEDSNKKPS-KPSL--LQTQP 325

GO:0003674 "molecular_function" evidence=ND

GO:0005829 "cytosol" evidence=IDA

GO:0008150 "biological_process" evidence=ND

GO:0043234 "protein complex" evidence=NAS

UNIPROTKB|F1NU19 F1NU19 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 271 (100.5 bits), Expect = 4.3e-42, Sum P(3) = 4.3e-42
 Identities = 65/192 (33%), Positives = 98/192 (51%)

Query:    37 VRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANV 96
             ++RL  E  L  H GCVN I WN  G  ++SGSDDT++ + +  SRK+L +I +GH AN+
Sbjct:     5 IQRLKLEATLNVHDGCVNTICWNDTGEYILSGSDDTNLVITNPYSRKVLTTIRSGHRANI 64

Query:    97 FCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVE 156
             F  KF+P T+D+ +VS +GD  +   N+ +       D        Y CH     ++   
Sbjct:    65 FSAKFLPCTNDKQIVSCSGDGVIFYTNVEQ-------DAETNRQCQYTCHYGTTYEIMTV 117

Query:   157 VGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRN-ILLDLRCGAKRSLADPPKQT 215
               +P+   S  EDGT+R  D R  +SC     + ++C++ IL++ R  A      PP   
Sbjct:   118 PNDPYTFLSCGEDGTVRWFDTRIKTSC-----TKEDCKDDILINCRRAATSVAICPPIPY 172

Query:   216 LSLKSCDISSTR 227
                  C  SS R
Sbjct:   173 YLAVGCSDSSVR 184

GO:0005634 "nucleus" evidence=IEA

GO:0030374 "ligand-dependent nuclear receptor transcription coactivator activity" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.V.4660.1 hypothetical protein (756 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	751
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	4e-17
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	9e-15
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-13
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	3e-13
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	6e-11
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	5e-10
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-08
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	3e-08
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	4e-08
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	5e-07
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	6e-07
smart00320	40	smart00320, WD40, WD40 repeats	1e-06
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	8e-06
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-05
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	3e-05
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-04
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	0.001
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	0.004
smart00320	40	smart00320, WD40, WD40 repeats	0.004
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	0.004

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 82.4 bits (204), Expect = 4e-17
 Identities = 45/219 (20%), Positives = 83/219 (37%), Gaps = 48/219 (21%)

Query: 41  SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTK 100
              R L+GH G V  ++ ++ G+ L SGS D  I +W   + + + ++ TGH++ V    
Sbjct: 42  ELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTL-TGHTSYVSSVA 100

Query: 101 FVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNP 160
           F P     ++ S + D  ++++++                   + HT  V  +A      
Sbjct: 101 FSP--DGRILSSSSRDKTIKVWDVETG----------KCLTTLRGHTDWVNSVAFSPDGT 148

Query: 161 HVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKS 220
            V  S+S+DGT++  D R G                                  TL+  +
Sbjct: 149 FVA-SSSQDGTIKLWDLRTGK------------------------------CVATLTGHT 177

Query: 221 CDISSTRPH----LLLVGGSDAFARLYDRRMLPPLTSCQ 255
            +++S         LL   SD   +L+D      L + +
Sbjct: 178 GEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLR 216

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 75.1 bits (185), Expect = 9e-15
 Identities = 38/130 (29%), Positives = 56/130 (43%), Gaps = 14/130 (10%)

Query: 44  RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP 103
             L GH G VN+++++  G  L+S S D  I +W  S+ K L ++  GH   V    F P
Sbjct: 171 ATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTL-RGHENGVNSVAFSP 229

Query: 104 ETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVV 163
                L+ SG+ D  +R+++L                     HT  V  LA       + 
Sbjct: 230 --DGYLLASGSEDGTIRVWDLRTGE----------CVQTLSGHTNSVTSLAWSPDGKRLA 277

Query: 164 WSASEDGTLR 173
            S S DGT+R
Sbjct: 278 -SGSADGTIR 286

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 72.0 bits (177), Expect = 1e-13
 Identities = 55/258 (21%), Positives = 91/258 (35%), Gaps = 69/258 (26%)

Query: 44  RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP 103
           R L+GH G V  ++++  G LL +GS D  I VW   + +LL ++  GH+  V       
Sbjct: 3   RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTL-KGHTGPVRDVAASA 61

Query: 104 ETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVV 163
                 + SG+ D  +RL++L   +G  +             HT  V  +A    +  ++
Sbjct: 62  --DGTYLASGSSDKTIRLWDLE--TGECVRT--------LTGHTSYVSSVAF-SPDGRIL 108

Query: 164 WSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDI 223
            S+S D T++  D   G                                  TL   +  +
Sbjct: 109 SSSSRDKTIKVWDVETGK------------------------------CLTTLRGHTDWV 138

Query: 224 SSTRPH----LLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS 279
           +S         +     D   +L+D             +    CV      H  E     
Sbjct: 139 NSVAFSPDGTFVASSSQDGTIKLWD-------------LRTGKCV-ATLTGHTGE----- 179

Query: 280 LHLTHVTFSPNGEEVLLS 297
             +  V FSP+GE++L S
Sbjct: 180 --VNSVAFSPDGEKLLSS 195

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 70.8 bits (174), Expect = 3e-13
 Identities = 37/140 (26%), Positives = 61/140 (43%), Gaps = 14/140 (10%)

Query: 42  QERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKF 101
               L GH   VN+++++  G+ + S S D  I +W   + K + ++ TGH+  V    F
Sbjct: 127 CLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATL-TGHTGEVNSVAF 185

Query: 102 VPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPH 161
            P    E ++S + D  ++L++LS                  + H   V  +A       
Sbjct: 186 SP--DGEKLLSSSSDGTIKLWDLSTGK----------CLGTLRGHENGVNSVAFSPDGYL 233

Query: 162 VVWSASEDGTLRQHDFRQGS 181
           +  S SEDGT+R  D R G 
Sbjct: 234 LA-SGSEDGTIRVWDLRTGE 252

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 63.9 bits (156), Expect = 6e-11
 Identities = 23/78 (29%), Positives = 46/78 (58%), Gaps = 3/78 (3%)

Query: 46  LEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPET 105
           L GH+  VN+++++  G LL SGS+D  I VW   + + + ++ +GH+ +V    + P+ 
Sbjct: 215 LRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTL-SGHTNSVTSLAWSPDG 273

Query: 106 SDELVVSGAGDAEVRLFN 123
               + SG+ D  +R+++
Sbjct: 274 KR--LASGSADGTIRIWD 289

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 62.0 bits (149), Expect = 5e-10
 Identities = 70/319 (21%), Positives = 110/319 (34%), Gaps = 60/319 (18%)

Query: 42  QERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSY-SSRKLLHSIETGHSANVFCTK 100
               L GH+  + +I+++  G LL+SGS D  I +W   +  KL+ S+E  H ++V    
Sbjct: 57  SSLLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLA 116

Query: 101 F-VPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGN 159
              P+ +  L+ S + D  V+L++LS                  + H+  V  LA     
Sbjct: 117 LSSPDGNSILLASSSLDGTVKLWDLS---------TPGKLIRTLEGHSESVTSLAFSPDG 167

Query: 160 PHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLK 219
             +   +S DGT++  D R G                          +LA       SL 
Sbjct: 168 KLLASGSSLDGTIKLWDLRTGKPL----------------------STLAGHTDPVSSL- 204

Query: 220 SCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPM--------- 270
               S     L+  G SD   RL+D      L S     S    V+ F P          
Sbjct: 205 --AFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHS-DSVVSSFSPDGSLLASGSS 261

Query: 271 --------------HLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAM 316
                          L      S  +  V FSP+G+ +    S   V L D+      + 
Sbjct: 262 DGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSS 321

Query: 317 RYTVGDASKIMSFTPTLNG 335
               G    + S + + +G
Sbjct: 322 LTLKGHEGPVSSLSFSPDG 340

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 57.0 bits (136), Expect = 2e-08
 Identities = 44/139 (31%), Positives = 62/139 (44%), Gaps = 13/139 (9%)

Query: 45  ELEGHQ-GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP 103
            L GH    V++ S +  GSLL SGS D  I +W   S   L    +GHS++V    F P
Sbjct: 237 TLSGHSDSVVSSFSPD--GSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSP 294

Query: 104 ETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVV 163
               +L+ SG+ D  VRL++L            +  S   + H   V  L+       +V
Sbjct: 295 --DGKLLASGSSDGTVRLWDLE--------TGKLLSSLTLKGHEGPVSSLSFSPDGSLLV 344

Query: 164 WSASEDGTLRQHDFRQGSS 182
              S+DGT+R  D R G  
Sbjct: 345 SGGSDDGTIRLWDLRTGKP 363

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 56.6 bits (135), Expect = 3e-08
 Identities = 44/157 (28%), Positives = 62/157 (39%), Gaps = 14/157 (8%)

Query: 41  SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSI-ETGHSANVFCT 99
           S  R L GH   V +++++  G LL SGS D  + +W   + KLL S+   GH   V   
Sbjct: 275 SLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSL 334

Query: 100 KFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGN 159
            F P+ S  LV  G+ D  +RL++L             T   L                +
Sbjct: 335 SFSPDGSL-LVSGGSDDGTIRLWDLR------------TGKPLKTLEGHSNVLSVSFSPD 381

Query: 160 PHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNI 196
             VV S S DGT+R  D   GS             ++
Sbjct: 382 GRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSL 418

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 56.3 bits (134), Expect = 4e-08
 Identities = 67/292 (22%), Positives = 101/292 (34%), Gaps = 58/292 (19%)

Query: 44  RELEGHQGCVNAISWNSKGSLLISGSD-DTHINVWSYSSRKLLHSIETGHSANVFCTKFV 102
           R LEGH   V +++++  G LL SGS  D  I +W   + K L ++  GH+  V    F 
Sbjct: 149 RTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTL-AGHTDPVSSLAFS 207

Query: 103 PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHV 162
           P+    L+ SG+ D  +RL++LS               +    H+  V       G+   
Sbjct: 208 PD-GGLLIASGSSDGTIRLWDLS---------TGKLLRSTLSGHSDSVVSSFSPDGSLLA 257

Query: 163 VWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCD 222
             S S DGT+R  D R  SS     S H                          S+ S  
Sbjct: 258 --SGSSDGTIRLWDLRSSSSLLRTLSGHSS------------------------SVLSVA 291

Query: 223 ISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHL 282
            S     LL  G SD   RL+D                         + L  H      +
Sbjct: 292 FSPD-GKLLASGSSDGTVRLWDLETGKL----------------LSSLTLKGHEGP---V 331

Query: 283 THVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLN 334
           + ++FSP+G  ++   S +    +     G              +SF+P   
Sbjct: 332 SSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSPDGR 383

Length = 466

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 46.2 bits (110), Expect = 5e-07
 Identities = 16/38 (42%), Positives = 24/38 (63%)

Query: 41 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWS 78
             R L+GH G V +++++  G+LL SGSDD  + VW 
Sbjct: 2  KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 52.4 bits (124), Expect = 6e-07
 Identities = 45/147 (30%), Positives = 69/147 (46%), Gaps = 14/147 (9%)

Query: 37  VRRLSQERELEGHQGCVNAISWNSKGSLLI-SGSDDTHINVWSYSSRKLLHSIETGHSAN 95
           +R       L GH   V++++++  G LLI SGS D  I +W  S+ KLL S  +GHS +
Sbjct: 185 LRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDS 244

Query: 96  VFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAV 155
           V  + F P     L+ SG+ D  +RL++L   S         +       H+  V  +A 
Sbjct: 245 V-VSSFSP--DGSLLASGSSDGTIRLWDLRSSS---------SLLRTLSGHSSSVLSVAF 292

Query: 156 EVGNPHVVWSASEDGTLRQHDFRQGSS 182
              +  ++ S S DGT+R  D   G  
Sbjct: 293 S-PDGKLLASGSSDGTVRLWDLETGKL 318

Length = 466

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 45.4 bits (108), Expect = 1e-06
 Identities = 14/38 (36%), Positives = 22/38 (57%)

Query: 41 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWS 78
             + L+GH G V +++++  G  L SGSDD  I +W 
Sbjct: 3  ELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 48.5 bits (114), Expect = 8e-06
 Identities = 44/137 (32%), Positives = 64/137 (46%), Gaps = 16/137 (11%)

Query: 38  RRLSQERELEGHQGCVNAISWNSKGS-LLISGSDDTHINVWSYSSRKLLHSIETGHSANV 96
            +L     L+GH+G V+++S++  GS L+  GSDD  I +W   + K L ++E     NV
Sbjct: 316 GKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHS--NV 373

Query: 97  FCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVE 156
               F P+    +V SG+ D  VRL++LS  S     D           HT RV  L   
Sbjct: 374 LSVSFSPDG--RVVSSGSTDGTVRLWDLSTGSLLRNLD----------GHTSRVTSLDFS 421

Query: 157 VGNPHVVWSASEDGTLR 173
                +  S S D T+R
Sbjct: 422 PDGKSLA-SGSSDNTIR 437

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 47.3 bits (113), Expect = 1e-05
 Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 12/58 (20%)

Query: 639 GDYIASGSDDGRWFIWEKQTV------------VNCVQCHPFDCVVATSGIDNTIKIW 684
           G  +A+GS DG   +W+ +T             V  V        +A+   D TI++W
Sbjct: 21  GKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLW 78

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 46.2 bits (110), Expect = 3e-05
 Identities = 21/80 (26%), Positives = 32/80 (40%), Gaps = 16/80 (20%)

Query: 617 QRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWE------KQTV------VNCVQ 664
           +   GH +    +   +F    G  ++S S D    +W+        T+      VN V 
Sbjct: 87  RTLTGHTS---YVSSVAFS-PDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVA 142

Query: 665 CHPFDCVVATSGIDNTIKIW 684
             P    VA+S  D TIK+W
Sbjct: 143 FSPDGTFVASSSQDGTIKLW 162

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 43.9 bits (104), Expect = 2e-04
 Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 16/83 (19%)

Query: 614 DMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQTV------------VN 661
           ++ +   GH     D+  ++     G Y+ASGS D    +W+ +T             V+
Sbjct: 42  ELLRTLKGHTGPVRDVAASAD----GTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVS 97

Query: 662 CVQCHPFDCVVATSGIDNTIKIW 684
            V   P   ++++S  D TIK+W
Sbjct: 98  SVAFSPDGRILSSSSRDKTIKVW 120

Length = 289

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 36.6 bits (85), Expect = 0.001
 Identities = 7/25 (28%), Positives = 13/25 (52%)

Query: 660 VNCVQCHPFDCVVATSGIDNTIKIW 684
           V  V   P   ++A+   D T+++W
Sbjct: 14  VTSVAFSPDGNLLASGSDDGTVRVW 38

Length = 39

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 39.6 bits (93), Expect = 0.004
 Identities = 13/35 (37%), Positives = 19/35 (54%)

Query: 44  RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWS 78
           + L GH   V +++W+  G  L SGS D  I +W 
Sbjct: 255 QTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 35.4 bits (82), Expect = 0.004
 Identities = 9/25 (36%), Positives = 12/25 (48%)

Query: 660 VNCVQCHPFDCVVATSGIDNTIKIW 684
           V  V   P    +A+   D TIK+W
Sbjct: 15  VTSVAFSPDGKYLASGSDDGTIKLW 39

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 37.4 bits (87), Expect = 0.004
 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 3/69 (4%)

Query: 405 ECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFA 464
           +     AA   K       + A+ D   A  +D  + +A+  +  A  +L KY+EAL+  
Sbjct: 35  DAYYNLAAAYYK---LGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAY 91

Query: 465 IAAQCLDPS 473
             A  LDP+
Sbjct: 92  EKALELDPN 100

Length = 100

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	751
KOG1310	758	consensus WD40 repeat protein [General function pr	100.0
KOG1334	559	consensus WD40 repeat protein [General function pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG1063	764	consensus RNA polymerase II elongator complex, sub	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.98
PLN00181	793	protein SPA1-RELATED; Provisional	99.98
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.98
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.98
KOG0263	707	consensus Transcription initiation factor TFIID, s	99.98
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.97
KOG0263	707	consensus Transcription initiation factor TFIID, s	99.97
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.97
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.97
KOG0315	311	consensus G-protein beta subunit-like protein (con	99.97
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	99.97
KOG0279	315	consensus G protein beta subunit-like protein [Sig	99.97
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.97
KOG0286	343	consensus G-protein beta subunit [General function	99.97
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	99.97
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.96
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.96
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.96
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.96
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.96
KOG0296	399	consensus Angio-associated migratory cell protein	99.96
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	99.96
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.96
KOG0295	406	consensus WD40 repeat-containing protein [Function	99.96
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.96
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.96
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.96
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.95
KOG0266	456	consensus WD40 repeat-containing protein [General	99.95
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.95
KOG4227	609	consensus WD40 repeat protein [General function pr	99.95
KOG0284	464	consensus Polyadenylation factor I complex, subuni	99.95
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	99.95
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.95
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.95
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.95
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.95
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.95
PTZ00421	493	coronin; Provisional	99.95
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.94
KOG0643	327	consensus Translation initiation factor 3, subunit	99.94
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.94
PLN00181	793	protein SPA1-RELATED; Provisional	99.94
KOG1539	910	consensus WD repeat protein [General function pred	99.93
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.93
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.93
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.93
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.93
PTZ00420	568	coronin; Provisional	99.93
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.93
KOG0296	399	consensus Angio-associated migratory cell protein	99.92
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.92
KOG0641	350	consensus WD40 repeat protein [General function pr	99.92
KOG0645	312	consensus WD40 repeat protein [General function pr	99.92
PTZ00421	493	coronin; Provisional	99.92
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.92
PTZ00420	568	coronin; Provisional	99.92
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.92
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.92
KOG1273	405	consensus WD40 repeat protein [General function pr	99.91
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.91
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.91
KOG0289	506	consensus mRNA splicing factor [General function p	99.91
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.91
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.91
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.91
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.91
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.91
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.9
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.9
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.9
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.9
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.9
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.9
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.9
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.89
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.89
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.89
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.89
KOG0643	327	consensus Translation initiation factor 3, subunit	99.89
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.89
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.88
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.88
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.88
KOG0289	506	consensus mRNA splicing factor [General function p	99.88
KOG0641	350	consensus WD40 repeat protein [General function pr	99.88
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.88
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.87
KOG0646	476	consensus WD40 repeat protein [General function pr	99.87
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.87
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.86
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.86
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.86
KOG2096	420	consensus WD40 repeat protein [General function pr	99.86
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.86
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.85
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.85
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.85
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.85
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.85
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.85
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.84
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.84
KOG0267	825	consensus Microtubule severing protein katanin p80	99.84
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.84
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.84
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.83
KOG1274	933	consensus WD40 repeat protein [General function pr	99.83
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.83
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.83
KOG2096	420	consensus WD40 repeat protein [General function pr	99.82
KOG0646	476	consensus WD40 repeat protein [General function pr	99.82
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.82
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.81
KOG0267	825	consensus Microtubule severing protein katanin p80	99.81
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.81
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.81
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.81
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.8
KOG0639	705	consensus Transducin-like enhancer of split protei	99.8
KOG4328	498	consensus WD40 protein [Function unknown]	99.79
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.79
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.79
KOG1539	910	consensus WD repeat protein [General function pred	99.79
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.79
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.79
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.78
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.78
KOG2055	514	consensus WD40 repeat protein [General function pr	99.78
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.77
KOG2048	691	consensus WD40 repeat protein [General function pr	99.77
KOG0639	705	consensus Transducin-like enhancer of split protei	99.75
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.75
KOG1274	933	consensus WD40 repeat protein [General function pr	99.75
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.73
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.73
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.73
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.72
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.71
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.71
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.7
KOG1273	405	consensus WD40 repeat protein [General function pr	99.7
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.7
KOG4328	498	consensus WD40 protein [Function unknown]	99.7
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.69
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.67
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.67
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.67
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.65
KOG1963	792	consensus WD40 repeat protein [General function pr	99.64
KOG1188	376	consensus WD40 repeat protein [General function pr	99.63
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.63
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.62
COG2319	466	FOG: WD40 repeat [General function prediction only	99.62
COG2319	466	FOG: WD40 repeat [General function prediction only	99.62
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.62
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.61
KOG2055	514	consensus WD40 repeat protein [General function pr	99.61
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.6
KOG2048	691	consensus WD40 repeat protein [General function pr	99.6
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.6
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.6
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.59
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.59
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.58
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.56
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.56
KOG1188	376	consensus WD40 repeat protein [General function pr	99.55
KOG1310	758	consensus WD40 repeat protein [General function pr	99.5
PRK01742	429	tolB translocation protein TolB; Provisional	99.49
KOG0649	325	consensus WD40 repeat protein [General function pr	99.47
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.47
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.44
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.44
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.44
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.44
PRK11028	330	6-phosphogluconolactonase; Provisional	99.44
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.44
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.43
KOG4227	609	consensus WD40 repeat protein [General function pr	99.42
KOG0649	325	consensus WD40 repeat protein [General function pr	99.4
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.4
PRK11028	330	6-phosphogluconolactonase; Provisional	99.39
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.35
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.35
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.33
PRK03629	429	tolB translocation protein TolB; Provisional	99.33
PRK04922	433	tolB translocation protein TolB; Provisional	99.31
KOG2139	445	consensus WD40 repeat protein [General function pr	99.31
PRK05137	435	tolB translocation protein TolB; Provisional	99.3
PRK02889	427	tolB translocation protein TolB; Provisional	99.29
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.26
KOG2139	445	consensus WD40 repeat protein [General function pr	99.25
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.25
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.25
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.24
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.23
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.21
KOG2321	703	consensus WD40 repeat protein [General function pr	99.21
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.2
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.2
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.19
KOG1963	792	consensus WD40 repeat protein [General function pr	99.18
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.17
PRK01742	429	tolB translocation protein TolB; Provisional	99.16
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.14
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.14
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.13
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.13
KOG1334	559	consensus WD40 repeat protein [General function pr	99.1
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.09
PRK05137	435	tolB translocation protein TolB; Provisional	99.09
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.07
PRK00178	430	tolB translocation protein TolB; Provisional	99.06
PRK04922	433	tolB translocation protein TolB; Provisional	99.06
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.04
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.03
PRK04792	448	tolB translocation protein TolB; Provisional	99.02
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.02
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.0
PRK02889	427	tolB translocation protein TolB; Provisional	99.0
KOG0553	304	consensus TPR repeat-containing protein [General f	99.0
PRK03629	429	tolB translocation protein TolB; Provisional	98.97
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	98.93
KOG2321	703	consensus WD40 repeat protein [General function pr	98.93
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	98.91
PRK01029	428	tolB translocation protein TolB; Provisional	98.87
KOG1409	404	consensus Uncharacterized conserved protein, conta	98.87
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	98.86
KOG2314	698	consensus Translation initiation factor 3, subunit	98.86
KOG1409	404	consensus Uncharacterized conserved protein, conta	98.85
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	98.83
KOG2315	566	consensus Predicted translation initiation factor	98.81
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.75
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.74
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.74
PRK00178	430	tolB translocation protein TolB; Provisional	98.7
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.68
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.67
KOG4234	271	consensus TPR repeat-containing protein [General f	98.67
PRK04792	448	tolB translocation protein TolB; Provisional	98.66
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.66
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.65
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.63
KOG4547	541	consensus WD40 repeat-containing protein [General	98.6
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.59
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.59
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.54
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	98.54
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.52
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	98.5
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	98.49
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.47
KOG2315	566	consensus Predicted translation initiation factor	98.46
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.42
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.42
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.41
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.4
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.39
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.39
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.36
COG4946	668	Uncharacterized protein related to the periplasmic	98.36
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.34
PRK01029	428	tolB translocation protein TolB; Provisional	98.34
KOG2695	425	consensus WD40 repeat protein [General function pr	98.33
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.32
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.31
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.3
KOG4547	541	consensus WD40 repeat-containing protein [General	98.29
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.24
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.24
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.24
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.24
PRK04043	419	tolB translocation protein TolB; Provisional	98.24
COG4946	668	Uncharacterized protein related to the periplasmic	98.16
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	98.11
KOG2695	425	consensus WD40 repeat protein [General function pr	98.07
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.05
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.05
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.02
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.02
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.01
PRK04043	419	tolB translocation protein TolB; Provisional	97.96
KOG2314	698	consensus Translation initiation factor 3, subunit	97.95
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	97.89
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	97.89
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	97.86
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.85
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.85
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	97.8
KOG3621	726	consensus WD40 repeat-containing protein [General	97.78
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	97.77
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	97.75
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	97.72
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	97.71
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	97.66
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	97.66
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	97.64
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	97.63
KOG0547	606	consensus Translocase of outer mitochondrial membr	97.62
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	97.62
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.59
KOG4648	536	consensus Uncharacterized conserved protein, conta	97.51
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.51
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	97.51
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	97.47
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	97.47
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	97.46
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	97.36
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	97.33
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	97.3
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	97.3
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	97.29
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	97.27
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	97.23
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	97.16
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	96.95
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	96.95
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	96.76
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	96.66
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	96.66
PRK02888	635	nitrous-oxide reductase; Validated	96.59
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	96.59
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	96.56
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	96.53
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	96.47
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	96.37
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	96.29
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	96.13
COG3391	381	Uncharacterized conserved protein [Function unknow	96.13
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	96.05
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	95.98
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	95.91
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	95.89
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	95.81
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	95.81
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	95.73
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	95.72
PRK15359	144	type III secretion system chaperone protein SscB;	95.67
KOG3621	726	consensus WD40 repeat-containing protein [General	95.64
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	95.57
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	95.52
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	95.51
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	95.5
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	95.44
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	95.43
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	95.27
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	95.26
TIGR02552	135	LcrH_SycD type III secretion low calcium response	95.18
KOG2395	644	consensus Protein involved in vacuole import and d	94.97
PRK10370	198	formate-dependent nitrite reductase complex subuni	94.89
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	94.64
COG3391	381	Uncharacterized conserved protein [Function unknow	94.59
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	94.4
PRK02888	635	nitrous-oxide reductase; Validated	94.36
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	94.31
KOG2444	238	consensus WD40 repeat protein [General function pr	94.28
PHA02713	557	hypothetical protein; Provisional	94.11
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	94.02
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	93.93
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	93.9
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	93.61
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	93.48
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	93.4
KOG2444	238	consensus WD40 repeat protein [General function pr	93.3
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	93.24
KOG2395	644	consensus Protein involved in vacuole import and d	93.21
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	92.99
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	92.97
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	92.89
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	92.88
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	92.87
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	92.68
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	92.63
PF13431	34	TPR_17: Tetratricopeptide repeat	92.56
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	91.99
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	91.75
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	91.75
PHA03098	534	kelch-like protein; Provisional	91.71
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	91.7
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	91.64
KOG0547	606	consensus Translocase of outer mitochondrial membr	90.96
PRK11189	296	lipoprotein NlpI; Provisional	90.77
PF13371	73	TPR_9: Tetratricopeptide repeat	90.64
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	90.5
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	90.31
PRK13616	591	lipoprotein LpqB; Provisional	90.24
PF11635	753	Med16: Mediator complex subunit 16; InterPro: IPR0	90.1
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	89.93
PHA02790	480	Kelch-like protein; Provisional	89.92
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	89.87
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	89.84
PHA02713	557	hypothetical protein; Provisional	89.55
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	89.45
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	89.02
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	88.85
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	88.82
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	88.66
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	88.62
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	87.79
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	87.51
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	87.13
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	86.74
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	86.4
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	86.38
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	86.23
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	86.18
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	86.09
PF03704	146	BTAD: Bacterial transcriptional activator domain;	85.35
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	85.2
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	85.05
PRK13616	591	lipoprotein LpqB; Provisional	85.01
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	84.98
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	84.95
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	84.89
PRK10115	686	protease 2; Provisional	84.66
PRK11189	296	lipoprotein NlpI; Provisional	84.63
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	84.58
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	84.35
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	84.3
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	84.15
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	84.13
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	83.72
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	83.6
PHA03098	534	kelch-like protein; Provisional	83.57
PRK15359	144	type III secretion system chaperone protein SscB;	83.39
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	83.1
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	82.78
PF14727	418	PHTB1_N: PTHB1 N-terminus	82.55
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	82.52
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	82.43
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	82.29
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	82.14
COG5167	776	VID27 Protein involved in vacuole import and degra	82.12
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	81.77
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	81.03
KOG2247	615	consensus WD40 repeat-containing protein [General	80.42
PRK12370	553	invasion protein regulator; Provisional	80.06
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	80.02

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=8.7e-101  Score=786.38  Aligned_cols=719  Identities=36%  Similarity=0.505  Sum_probs=583.7

Q ss_pred             CCCCCCCCchHHHHHhhhccCcCcccccccccchhhhccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCC
Q 004468            1 MENFPFHDGSIYDMLDTRHTDTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYS   80 (751)
Q Consensus         1 ~~~~~~~~~~~~~~l~~r~~~~~~~~~~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~   80 (751)
                      |.+..|++++|..+|..|......-.++...+++.++.++.+.++|.||+||||||+|+.+|.+|||||+|..++|||+.
T Consensus         1 M~~vs~s~~~i~rql~~r~~~~~h~~rq~y~~~s~~lrrL~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~   80 (758)
T KOG1310|consen    1 MSGVSLSDGNILRQLDYRDAFQLHISRQIYMGNSTWLRRLDLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPF   80 (758)
T ss_pred             CCceeccchhHhhhccccccchhhhHHHHhccccHHHhhcchhhhhccccceecceeecCCCCEEeecCCcceEEeecch
Confidence            78888999999988888876555444432348899999999999999999999999999999999999999999999999


Q ss_pred             CCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCC
Q 004468           81 SRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNP  160 (751)
Q Consensus        81 ~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~  160 (751)
                      ..++++.+.+||.++|+|++|.|.+++.+++||+.|..|+|+|+....+...+.+..++...+.||..+|+.|+..|.++
T Consensus        81 ~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~P  160 (758)
T KOG1310|consen   81 EYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGP  160 (758)
T ss_pred             hcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCC
Confidence            99999999999999999999999998899999999999999999988777777777888999999999999999999888


Q ss_pred             CEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeE
Q 004468          161 HVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFA  240 (751)
Q Consensus       161 ~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~I  240 (751)
                      +.||++++||+|+++|+|.+..|.+....+..+.++.-               .....+|+.++|.++++|++|+.|..+
T Consensus       161 htfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~---------------~lielk~ltisp~rp~~laVGgsdpfa  225 (758)
T KOG1310|consen  161 HTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNP---------------QLIELKCLTISPSRPYYLAVGGSDPFA  225 (758)
T ss_pred             ceEEEecCCcceeeecccCCccCCccccccHHHHHhch---------------hhheeeeeeecCCCCceEEecCCCchh
Confidence            99999999999999999999988766555544443332               235789999999999999999999999


Q ss_pred             EEEeCC-CCCCccccCCCCC----CCCcccccccccc-ccCCc-ccc--ceEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 004468          241 RLYDRR-MLPPLTSCQKRMS----PPPCVNYFCPMHL-SEHGR-SSL--HLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (751)
Q Consensus       241 riwD~~-~~~~~~~~~~~~~----~~~~~~~~~~~~~-~~~g~-~~~--~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~  311 (751)
                      |+||+| +.+....-.....    +..|+++|+|+|+ ...|. ..+  -++.++|+|+|..|+++.+..+||+||++.+
T Consensus       226 rLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~  305 (758)
T KOG1310|consen  226 RLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNED  305 (758)
T ss_pred             hhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCC
Confidence            999954 4444443332222    3458999999999 33331 112  2688999999999999999999999999996


Q ss_pred             Ccceeeeec------CCCceeEEeC----CCCCCcccCCC-cccccccccccccccccCcchhHHHHHHHHHhhhcCCCh
Q 004468          312 GGRAMRYTV------GDASKIMSFT----PTLNGLELQPP-IHDFLQTNIRVRGEVATGLGKCRMLVEIARNSLEEGKHP  380 (751)
Q Consensus       312 ~~~~~~~~~------~~~~~~~~~s----p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~  380 (751)
                      +.....+..      +.......|+    .....+..... ......++.+.. +.++..+++.+|.+...+.++.|++.
T Consensus       306 ~~~~~y~~~~~~~~~~~~~~~~lfT~~~~~sN~lh~~en~~~~~tP~sr~hrs-p~~a~~~~~~eL~e~ie~~~~egnd~  384 (758)
T KOG1310|consen  306 KSPTPYFLPIEDSNKKPSKPSLLFTQPLKRSNYLHWYENNFGASTPASRVHRS-PYTAAQPRFYELPENIEKFKTEGNDG  384 (758)
T ss_pred             CCceeecCcccccccCCCCcchhhccccccccccccccCCccccCCccccccC-cccccccchhhchHHHHHHHhhccch
Confidence            644433322      0111111122    11111111111 111222333333 34566677888888888888888755


Q ss_pred             hHH------HHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcchHHHHHHHHHHh
Q 004468          381 YYG------IEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQL  454 (751)
Q Consensus       381 ~~a------i~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~a~~~~~~~l~~l  454 (751)
                      +++      |..|+.+++..      +..+.+|+|||+++|+|+|.||.|+|||||++|++++|.+.||||||++||.+|
T Consensus       385 ly~~~~~~~i~~~s~a~q~~------~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el  458 (758)
T KOG1310|consen  385 LYESIVSGAISHYSRAIQYV------PDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNEL  458 (758)
T ss_pred             hhhHHHHHHHHHHHHHhhhc------cchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHH
Confidence            444      44555555544      334679999999999999999999999999999999999999999999999999


Q ss_pred             cchHHHHHHHHHhcccCCCChhhhHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCccccccchhcccccCCCCCCCCC
Q 004468          455 CKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHIAAAETEKNNKANDGGARSEPRTGRVLSLSDIIYRSEANSDASQDGP  534 (751)
Q Consensus       455 ~~~~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  534 (751)
                      +++++|+.|..+++.+||........|.++.+++.++.++.......       .-.|+.++++.++|.+..++..++-.
T Consensus       459 ~r~~eal~~~~alq~~~Ptd~a~~~~v~~l~rDi~aa~~~~~~e~~~-------~~~ri~t~~~~~~r~~~~~~~~~~~~  531 (758)
T KOG1310|consen  459 TRYLEALSCHWALQMSFPTDVARQNFVLCLPRDISAALFSNPSEMIR-------AFARIDTDLSSVRRFFWIHKVLRGCL  531 (758)
T ss_pred             hhHHHhhhhHHHHhhcCchhhhhhhhhhccccchHHHhccCchhhhh-------hhheeccchhhhhhhhhhhhhhhhhh
Confidence            99999999999999999977766778999999999998764333222       22378888889999999999999999


Q ss_pred             CCCCCCCchhhhhhhcccCCCCCCCCCccccccccCccceeecccCCCccccccCCCCCCCC-CCCCCCCCCCCCccccc
Q 004468          535 RSEREDSDYDEEVEVDFHTSVPGDEGRDVEANFLHGSLNVRIHRRGDSARETVDANGSSGSP-SSSSQNDRIPYQPETVI  613 (751)
Q Consensus       535 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  613 (751)
                      +++++|++.|.|.+++..++..+++.+..++|.+.++|.++++...++..-. ..+...... .++..++...|.++.+.
T Consensus       532 ~l~s~d~~~e~e~p~d~qts~vds~~R~dd~n~~~~~l~~~v~~~~~~~~~~-~~~~~~~~~~~ssl~nDe~dyq~E~sy  610 (758)
T KOG1310|consen  532 LLISSDIYWEQEQPWDSQTSDVDSSQRLDDENGFLTLLEPPVNYENEVESSS-GENIVSMYTGHSSLNNDEDDYQDEESY  610 (758)
T ss_pred             hhhcccccccccCCCCCCceeccccccccccccccccccCcccccccccccc-ccccccccccccccccchhhcccchhh
Confidence            9999999999999999999999999999999999999999999987752111 111111111 22335666678889999


Q ss_pred             cccceeecccccceeeeEeeeccCCCCEEEEccCCCcEEEEecCC------------eeeeeeccCCCceEEEEecCCce
Q 004468          614 DMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQT------------VVNCVQCHPFDCVVATSGIDNTI  681 (751)
Q Consensus       614 ~~~~~~~gh~~~~~~i~~~~~~~~~~~~v~sgs~dg~~~iW~~~~------------~v~~v~~~p~~~~las~~~d~~v  681 (751)
                      +|.++|.||||..||||+++|+|.+|+||+|||+||++|||++.+            +|||++.||..++|||+|+|.||
T Consensus       611 dy~~rYvGHCNv~TDIKeanFlGqrgeyiasgSddgr~fiwek~tg~i~av~~gdssivnciqghP~~~~latSgiDsti  690 (758)
T KOG1310|consen  611 DYASRYVGHCNVTTDIKEANFLGQRGEYIASGSDDGRFFIWEKLTGSILAVIHGDSSIVNCIQGHPRCPTLATSGIDSTI  690 (758)
T ss_pred             hHHhhhccccccccccccccccccCCCeeeEecCCCceEEeecCCcceEEEeeCchhheeeccCCCCCceeeeccCccce
Confidence            999999999999999999999999999999999999999999988            89999999999999999999999


Q ss_pred             EEecCCCCCCCccCCCCCCCChhhHHHHHHHHHHHHhccccccccHHHHHHhhhcccccCCcCCccccCC
Q 004468          682 KIWTPSASVPSIVSGGAAGPDTADVLEAMESNQRKLSRNREHSLSYELLERFHMHEFSEGSLRPFECAQS  751 (751)
Q Consensus       682 ~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  751 (751)
                      |||+|.. .+....++..+|....+.+.++.|+++..+++...+..+.|.+||+| |.+|..|||+|+|+
T Consensus       691 KIwsp~a-~p~~~as~~h~pns~~iv~~~e~n~Q~~sR~~~~~l~~~~~~~fr~~-~~~g~~h~~~~t~~  758 (758)
T KOG1310|consen  691 KIWSPEA-TPPSGASRNHRPNSYAIVATNEMNRQQGSRDSYITLRMLSHLAFRAH-LDDGFGHEVLDTDA  758 (758)
T ss_pred             EEecccC-CCCcccccccCCchhhhhhhhhhhhhhhccCCcchHHHHHHHHHHHh-hcccCCcccccCCC
Confidence            9999998 44444556677877777788888888877666666777788899999 99999999999985

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=2.2e-47  Score=389.40  Aligned_cols=264  Identities=31%  Similarity=0.505  Sum_probs=222.1

Q ss_pred             chHHHHHhhhccCcCcccccccccchhhhccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEe
Q 004468            9 GSIYDMLDTRHTDTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSI   88 (751)
Q Consensus         9 ~~~~~~l~~r~~~~~~~~~~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l   88 (751)
                      .+...-|.+|+++++..|.+.+.....+++++.+.+.|.+|.|||+.|.|+..|..|+|||+|..|.+||...+.....+
T Consensus       101 w~~~~~l~~Re~gss~~f~~~~~~s~~~vqr~~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f  180 (559)
T KOG1334|consen  101 WQSGTALHQRELGSSSRFVYEACGSRLFVQRLRLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSF  180 (559)
T ss_pred             cchhhHHHhhhcCchhHHHHHhhhhHHHHHHhhhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCccccc
Confidence            44456688899999888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeC
Q 004468           89 ETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASE  168 (751)
Q Consensus        89 ~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~  168 (751)
                      ..||..+|+..+|.|.+++..|++++.||.|++=.+... +.+      +....+..|.++|..++.-|+.++.|.|+++
T Consensus       181 ~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t-~~~------e~t~rl~~h~g~vhklav~p~sp~~f~S~ge  253 (559)
T KOG1334|consen  181 ESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILET-GYV------ENTKRLAPHEGPVHKLAVEPDSPKPFLSCGE  253 (559)
T ss_pred             ccccccchhhhhccCCCCCcCceeccccCceeeeeeccc-cce------ecceecccccCccceeeecCCCCCccccccc
Confidence            899999999999999998899999999999999887642 221      3355677899999999999999999999999


Q ss_pred             CCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCC
Q 004468          169 DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRML  248 (751)
Q Consensus       169 Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~  248 (751)
                      |+.+.-+|+|+......           +. .+.       ...........++.+|...+++++|+.|..+|+||.|..
T Consensus       254 D~~v~~~Dlr~~~pa~~-----------~~-cr~-------~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~  314 (559)
T KOG1334|consen  254 DAVVFHIDLRQDVPAEK-----------FV-CRE-------ADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRI  314 (559)
T ss_pred             ccceeeeeeccCCccce-----------ee-eec-------cCCccceeeeeEecCCCCccccccCChhhhhhhhcccch
Confidence            99999999998764311           11 000       001123568899999998889999999999999999976


Q ss_pred             CCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEE
Q 004468          249 PPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMD  307 (751)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwd  307 (751)
                      ..-       .....+..|+|.|+....+.  .|++++|+.++..|+++..|..||||.
T Consensus       315 ~~e-------~~n~~~~~f~p~hl~~d~~v--~ITgl~Ysh~~sElLaSYnDe~IYLF~  364 (559)
T KOG1334|consen  315 DKE-------ENNGVLDKFCPHHLVEDDPV--NITGLVYSHDGSELLASYNDEDIYLFN  364 (559)
T ss_pred             hhc-------cccchhhhcCCccccccCcc--cceeEEecCCccceeeeecccceEEec
Confidence            532       12235788999999874443  499999999999999999999999993

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=3.7e-44  Score=355.42  Aligned_cols=234  Identities=20%  Similarity=0.311  Sum_probs=191.0

Q ss_pred             cccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEE
Q 004468           41 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR  120 (751)
Q Consensus        41 ~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~  120 (751)
                      .+...+.||.+.|.|++|+|+|..||||+.|.++++||+.+..+..+. ++|...|.||+|+|+  |+.||||+.||+|+
T Consensus       106 rCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~-KgH~~WVlcvawsPD--gk~iASG~~dg~I~  182 (480)
T KOG0271|consen  106 RCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTC-KGHKNWVLCVAWSPD--GKKIASGSKDGSIR  182 (480)
T ss_pred             eeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceee-cCCccEEEEEEECCC--cchhhccccCCeEE
Confidence            355678999999999999999999999999999999999999999999 899999999999999  89999999999999


Q ss_pred             EEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecC----CCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceE
Q 004468          121 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVG----NPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNI  196 (751)
Q Consensus       121 vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~----~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~  196 (751)
                      +||..+++         .....+.+|+..|++++|.|-    ...+|++++.||+|+|||+..+..              
T Consensus       183 lwdpktg~---------~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~--------------  239 (480)
T KOG0271|consen  183 LWDPKTGQ---------QIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTC--------------  239 (480)
T ss_pred             EecCCCCC---------cccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceE--------------
Confidence            99999764         336789999999999999862    346899999999999999987652              


Q ss_pred             EEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCC
Q 004468          197 LLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHG  276 (751)
Q Consensus       197 l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  276 (751)
                                 +....+|..+|+|+.|-.  ..+|++|+.|++|++|+...+.....+                    .|
T Consensus       240 -----------~~~lsgHT~~VTCvrwGG--~gliySgS~DrtIkvw~a~dG~~~r~l--------------------kG  286 (480)
T KOG0271|consen  240 -----------VRTLSGHTASVTCVRWGG--EGLIYSGSQDRTIKVWRALDGKLCREL--------------------KG  286 (480)
T ss_pred             -----------EEEeccCccceEEEEEcC--CceEEecCCCceEEEEEccchhHHHhh--------------------cc
Confidence                       223345889999999985  369999999999999999876543332                    33


Q ss_pred             ccccceEEEEEc-----------CCCC-------------------------EEEEEeCCCcEEEEECCCCC-cceeeee
Q 004468          277 RSSLHLTHVTFS-----------PNGE-------------------------EVLLSYSGEHVYLMDVNHAG-GRAMRYT  319 (751)
Q Consensus       277 ~~~~~vt~v~fs-----------pdg~-------------------------~Ll~~s~d~~I~lwdl~~~~-~~~~~~~  319 (751)
                      |.. +|+.++.+           |.|+                         .|++|+.|.++++|+-...+ ......+
T Consensus       287 Hah-wvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtg  365 (480)
T KOG0271|consen  287 HAH-WVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTG  365 (480)
T ss_pred             cch-heeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhc
Confidence            433 46666555           3344                         49999999999999977654 3334556


Q ss_pred             cCCCceeEEeCCCCC
Q 004468          320 VGDASKIMSFTPTLN  334 (751)
Q Consensus       320 ~~~~~~~~~~sp~~~  334 (751)
                      |...++.+.|+|+..
T Consensus       366 Hq~lVn~V~fSPd~r  380 (480)
T KOG0271|consen  366 HQALVNHVSFSPDGR  380 (480)
T ss_pred             hhhheeeEEECCCcc
Confidence            666777777777643

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=5.5e-42  Score=342.85  Aligned_cols=208  Identities=19%  Similarity=0.221  Sum_probs=168.3

Q ss_pred             cccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCC---eEEEEecccCCcceEEEEEecCCCCcEEEEEECCC
Q 004468           41 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSR---KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA  117 (751)
Q Consensus        41 ~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~---~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg  117 (751)
                      +..++|..|+++|+-+.||++|++||||+.|.+..||.+...   +..+++ .+|..+|..+.|+|+  +++|++|+.|.
T Consensus       215 qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tl-vgh~~~V~yi~wSPD--dryLlaCg~~e  291 (519)
T KOG0293|consen  215 QTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTL-VGHSQPVSYIMWSPD--DRYLLACGFDE  291 (519)
T ss_pred             hhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeee-ecccCceEEEEECCC--CCeEEecCchH
Confidence            446788999999999999999999999999999999987533   345666 799999999999999  89999999999


Q ss_pred             cEEEEECCCCCCCCCCCCCCCCceee-cccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceE
Q 004468          118 EVRLFNLSRFSGRGLDDNAITPSALY-QCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNI  196 (751)
Q Consensus       118 ~V~vwd~~~~~~~~~~~~~~~~~~~~-~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~  196 (751)
                      .+.+||+.++.          +...+ .+|...+.+++|.| ++..|++|+.|++|..||+.....-             
T Consensus       292 ~~~lwDv~tgd----------~~~~y~~~~~~S~~sc~W~p-Dg~~~V~Gs~dr~i~~wdlDgn~~~-------------  347 (519)
T KOG0293|consen  292 VLSLWDVDTGD----------LRHLYPSGLGFSVSSCAWCP-DGFRFVTGSPDRTIIMWDLDGNILG-------------  347 (519)
T ss_pred             heeeccCCcch----------hhhhcccCcCCCcceeEEcc-CCceeEecCCCCcEEEecCCcchhh-------------
Confidence            99999999763          23333 23568999999999 6788999999999999999875411             


Q ss_pred             EEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCC
Q 004468          197 LLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHG  276 (751)
Q Consensus       197 l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  276 (751)
                      -|.            ......|.++++++ |+.++++.+.|..|++|++.........                      
T Consensus       348 ~W~------------gvr~~~v~dlait~-Dgk~vl~v~~d~~i~l~~~e~~~dr~li----------------------  392 (519)
T KOG0293|consen  348 NWE------------GVRDPKVHDLAITY-DGKYVLLVTVDKKIRLYNREARVDRGLI----------------------  392 (519)
T ss_pred             ccc------------ccccceeEEEEEcC-CCcEEEEEecccceeeechhhhhhhccc----------------------
Confidence            010            00224689999999 4788888899999999998765322111                      


Q ss_pred             ccccceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004468          277 RSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (751)
Q Consensus       277 ~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~  310 (751)
                      ....+|+++..|.||++++++-.+..|++||+..
T Consensus       393 se~~~its~~iS~d~k~~LvnL~~qei~LWDl~e  426 (519)
T KOG0293|consen  393 SEEQPITSFSISKDGKLALVNLQDQEIHLWDLEE  426 (519)
T ss_pred             cccCceeEEEEcCCCcEEEEEcccCeeEEeecch
Confidence            0112599999999999999999999999999765

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=1.3e-40  Score=334.87  Aligned_cols=215  Identities=25%  Similarity=0.334  Sum_probs=188.5

Q ss_pred             hccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECC
Q 004468           37 VRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD  116 (751)
Q Consensus        37 i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~D  116 (751)
                      .+.+.+...--|-+.+|..+.|+.+++.|||||.+|.++||+..+...+.+| .||+..|.++.|+|..++..++||+.|
T Consensus       162 ~~~~~l~~SQ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l-~gH~~~v~~~~fhP~~~~~~lat~s~D  240 (459)
T KOG0272|consen  162 LQSLELVCSQVGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTL-RGHTSRVGAAVFHPVDSDLNLATASAD  240 (459)
T ss_pred             hhhhhhhhhhccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEE-eccccceeeEEEccCCCccceeeeccC
Confidence            3444444444577899999999999999999999999999999999888888 899999999999999446799999999


Q ss_pred             CcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceE
Q 004468          117 AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNI  196 (751)
Q Consensus       117 g~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~  196 (751)
                      |+|++|++...          .++..+.+|..+|..++|+| +|++|+|++.|.+-++||++++...             
T Consensus       241 gtvklw~~~~e----------~~l~~l~gH~~RVs~VafHP-sG~~L~TasfD~tWRlWD~~tk~El-------------  296 (459)
T KOG0272|consen  241 GTVKLWKLSQE----------TPLQDLEGHLARVSRVAFHP-SGKFLGTASFDSTWRLWDLETKSEL-------------  296 (459)
T ss_pred             CceeeeccCCC----------cchhhhhcchhhheeeeecC-CCceeeecccccchhhcccccchhh-------------
Confidence            99999999864          67899999999999999999 7899999999999999999998643             


Q ss_pred             EEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCC
Q 004468          197 LLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHG  276 (751)
Q Consensus       197 l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  276 (751)
                                  ....+|...|.+|+|+| +|.++++|+.|..-||||+|++..+.             ++       .|
T Consensus       297 ------------L~QEGHs~~v~~iaf~~-DGSL~~tGGlD~~~RvWDlRtgr~im-------------~L-------~g  343 (459)
T KOG0272|consen  297 ------------LLQEGHSKGVFSIAFQP-DGSLAATGGLDSLGRVWDLRTGRCIM-------------FL-------AG  343 (459)
T ss_pred             ------------HhhcccccccceeEecC-CCceeeccCccchhheeecccCcEEE-------------Ee-------cc
Confidence                        22345888999999999 58999999999999999999986433             33       34


Q ss_pred             ccccceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004468          277 RSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (751)
Q Consensus       277 ~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~  310 (751)
                      |.. .|.+|+|+|+|..|++|+.|++++|||++.
T Consensus       344 H~k-~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~  376 (459)
T KOG0272|consen  344 HIK-EILSVAFSPNGYHLATGSSDNTCKVWDLRM  376 (459)
T ss_pred             ccc-ceeeEeECCCceEEeecCCCCcEEEeeecc
Confidence            544 599999999999999999999999999987

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.8e-37  Score=307.90  Aligned_cols=189  Identities=19%  Similarity=0.225  Sum_probs=161.2

Q ss_pred             EEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEE
Q 004468           84 LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVV  163 (751)
Q Consensus        84 ~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l  163 (751)
                      +-..+ .||.++|.|++|+|+  +..|+||+.|.++|+||+.+.          .|..++++|...|.+++|+| ++..|
T Consensus       107 CssS~-~GH~e~Vl~~~fsp~--g~~l~tGsGD~TvR~WD~~Te----------Tp~~t~KgH~~WVlcvawsP-Dgk~i  172 (480)
T KOG0271|consen  107 CSSSI-AGHGEAVLSVQFSPT--GSRLVTGSGDTTVRLWDLDTE----------TPLFTCKGHKNWVLCVAWSP-DGKKI  172 (480)
T ss_pred             ecccc-CCCCCcEEEEEecCC--CceEEecCCCceEEeeccCCC----------CcceeecCCccEEEEEEECC-Ccchh
Confidence            34455 799999999999998  899999999999999999975          67899999999999999999 77999


Q ss_pred             EEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCC----CCcEEEEEeCCCe
Q 004468          164 WSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISST----RPHLLLVGGSDAF  239 (751)
Q Consensus       164 ~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~----~~~~l~sgs~D~~  239 (751)
                      +||+.||+|++||..+++..                        ....++|..+|++++|.|-    ..++|++++.||.
T Consensus       173 ASG~~dg~I~lwdpktg~~~------------------------g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~  228 (480)
T KOG0271|consen  173 ASGSKDGSIRLWDPKTGQQI------------------------GRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGS  228 (480)
T ss_pred             hccccCCeEEEecCCCCCcc------------------------cccccCcccceeEEeecccccCCCccceecccCCCC
Confidence            99999999999999998754                        2334568899999999874    3569999999999


Q ss_pred             EEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcceeeee
Q 004468          240 ARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYT  319 (751)
Q Consensus       240 IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~~~~  319 (751)
                      |+|||+..+..+             ...       .||.. +||||.|--+| +|++|+.|++|++|+...+.....+.+
T Consensus       229 vrIWd~~~~~~~-------------~~l-------sgHT~-~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~~~r~lkG  286 (480)
T KOG0271|consen  229 VRIWDTKLGTCV-------------RTL-------SGHTA-SVTCVRWGGEG-LIYSGSQDRTIKVWRALDGKLCRELKG  286 (480)
T ss_pred             EEEEEccCceEE-------------EEe-------ccCcc-ceEEEEEcCCc-eEEecCCCceEEEEEccchhHHHhhcc
Confidence            999999865432             222       56766 69999998776 689999999999999999887778888


Q ss_pred             cCCCceeEEeCCC
Q 004468          320 VGDASKIMSFTPT  332 (751)
Q Consensus       320 ~~~~~~~~~~sp~  332 (751)
                      |++-++.++.+.+
T Consensus       287 HahwvN~lalsTd  299 (480)
T KOG0271|consen  287 HAHWVNHLALSTD  299 (480)
T ss_pred             cchheeeeeccch
Confidence            8888888887754

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=8.6e-38  Score=319.61  Aligned_cols=244  Identities=18%  Similarity=0.292  Sum_probs=191.4

Q ss_pred             CCCchHHHHHhhhccCcCcccccccccchhhhccccccEEeccCCCcEEEEEECC-CCCEEEEEeCCCcEEEEeCCC-Ce
Q 004468            6 FHDGSIYDMLDTRHTDTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNS-KGSLLISGSDDTHINVWSYSS-RK   83 (751)
Q Consensus         6 ~~~~~~~~~l~~r~~~~~~~~~~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~-dg~~LaSgs~Dg~I~IWd~~~-~~   83 (751)
                      ++.-...++..+-++..+.++.-.++ ...+.-.-+.++++.||+..|+++.|.| .+.+|+||+.|+.|+||++.. +.
T Consensus       171 ~h~k~~~dyq~r~~l~~P~dv~vnlR-~~rc~~Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~  249 (503)
T KOG0282|consen  171 LHGKSLFDYQGRSYLQKPKDVGVNLR-EERCYLPKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRR  249 (503)
T ss_pred             ccccchhhccccccccCCcccCCccc-cceeeccHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcc
Confidence            44444444444444444444433333 2222333467899999999999999999 899999999999999999876 88


Q ss_pred             EEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEE
Q 004468           84 LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVV  163 (751)
Q Consensus        84 ~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l  163 (751)
                      ++.++ .+|..+|.+++|+++  |..|+|+|.|++|++||++++          +++..+. -...++++.|.|++.++|
T Consensus       250 ~lrtf-~gH~k~Vrd~~~s~~--g~~fLS~sfD~~lKlwDtETG----------~~~~~f~-~~~~~~cvkf~pd~~n~f  315 (503)
T KOG0282|consen  250 CLRTF-KGHRKPVRDASFNNC--GTSFLSASFDRFLKLWDTETG----------QVLSRFH-LDKVPTCVKFHPDNQNIF  315 (503)
T ss_pred             eehhh-hcchhhhhhhhcccc--CCeeeeeecceeeeeeccccc----------eEEEEEe-cCCCceeeecCCCCCcEE
Confidence            89998 899999999999999  899999999999999999976          3344443 244578999999888999


Q ss_pred             EEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEE
Q 004468          164 WSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLY  243 (751)
Q Consensus       164 ~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~Iriw  243 (751)
                      ++|+.|+.|+.||+|+++.                         +.....|...|..+.|-+ ++.++++.+.|+.|+||
T Consensus       316 l~G~sd~ki~~wDiRs~kv-------------------------vqeYd~hLg~i~~i~F~~-~g~rFissSDdks~riW  369 (503)
T KOG0282|consen  316 LVGGSDKKIRQWDIRSGKV-------------------------VQEYDRHLGAILDITFVD-EGRRFISSSDDKSVRIW  369 (503)
T ss_pred             EEecCCCcEEEEeccchHH-------------------------HHHHHhhhhheeeeEEcc-CCceEeeeccCccEEEE
Confidence            9999999999999999873                         223334677899999999 58999999999999999


Q ss_pred             eCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004468          244 DRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (751)
Q Consensus       244 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~  310 (751)
                      +.+...++.....                    .......+++.+|+++++++-+.|+.|.+|.+..
T Consensus       370 e~~~~v~ik~i~~--------------------~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~  416 (503)
T KOG0282|consen  370 ENRIPVPIKNIAD--------------------PEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVP  416 (503)
T ss_pred             EcCCCccchhhcc--------------------hhhccCcceecCCCCCeehhhccCceEEEEeccc
Confidence            9987654432210                    1111367899999999999999999999997544

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=1.1e-36  Score=294.52  Aligned_cols=209  Identities=24%  Similarity=0.329  Sum_probs=180.2

Q ss_pred             cccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCC-eEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcE
Q 004468           41 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSR-KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEV  119 (751)
Q Consensus        41 ~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~-~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V  119 (751)
                      .++..|.||++.|+++.|+|+|.+||||+.|..|.+|++... +-...+ ++|+++|..+.|.++  ++.|++++.|.+|
T Consensus        38 ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~l-kgHsgAVM~l~~~~d--~s~i~S~gtDk~v  114 (338)
T KOG0265|consen   38 APIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVL-KGHSGAVMELHGMRD--GSHILSCGTDKTV  114 (338)
T ss_pred             chhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeee-ccccceeEeeeeccC--CCEEEEecCCceE
Confidence            456678999999999999999999999999999999996543 344455 799999999999999  7999999999999


Q ss_pred             EEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEe
Q 004468          120 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD  199 (751)
Q Consensus       120 ~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~  199 (751)
                      +.||++++          +.++.+++|+.-|+++.-+-.++.++.|++.||++++||+|+......              
T Consensus       115 ~~wD~~tG----------~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t--------------  170 (338)
T KOG0265|consen  115 RGWDAETG----------KRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKT--------------  170 (338)
T ss_pred             EEEecccc----------eeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhc--------------
Confidence            99999976          568899999999999987666778999999999999999998653311              


Q ss_pred             cccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccc
Q 004468          200 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS  279 (751)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  279 (751)
                                  ...+..++++.|+.. +..+.+|+-|+.|++||+|....+..+                    .||..
T Consensus       171 ------------~~~kyqltAv~f~d~-s~qv~sggIdn~ikvWd~r~~d~~~~l--------------------sGh~D  217 (338)
T KOG0265|consen  171 ------------FENKYQLTAVGFKDT-SDQVISGGIDNDIKVWDLRKNDGLYTL--------------------SGHAD  217 (338)
T ss_pred             ------------cccceeEEEEEeccc-ccceeeccccCceeeeccccCcceEEe--------------------ecccC
Confidence                        113568999999984 789999999999999999976543322                    56766


Q ss_pred             cceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004468          280 LHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (751)
Q Consensus       280 ~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~  310 (751)
                       .|+.+..+|+|.++++.+.|.++++||++-
T Consensus       218 -tIt~lsls~~gs~llsnsMd~tvrvwd~rp  247 (338)
T KOG0265|consen  218 -TITGLSLSRYGSFLLSNSMDNTVRVWDVRP  247 (338)
T ss_pred             -ceeeEEeccCCCccccccccceEEEEEecc
Confidence             699999999999999999999999999876

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=4e-36  Score=289.42  Aligned_cols=217  Identities=24%  Similarity=0.362  Sum_probs=188.8

Q ss_pred             ccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcE
Q 004468           40 LSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEV  119 (751)
Q Consensus        40 ~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V  119 (751)
                      ++..++|+||.+.|+++.|++|+++|+|+|.||.++|||..+..+++.+ +--...|..++|+|.  ++++|.|+.|+..
T Consensus        45 ~~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~hai-pl~s~WVMtCA~sPS--g~~VAcGGLdN~C  121 (343)
T KOG0286|consen   45 MRTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAI-PLPSSWVMTCAYSPS--GNFVACGGLDNKC  121 (343)
T ss_pred             eeeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEE-ecCceeEEEEEECCC--CCeEEecCcCcee
Confidence            4556899999999999999999999999999999999999998888888 667889999999999  8999999999999


Q ss_pred             EEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEe
Q 004468          120 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD  199 (751)
Q Consensus       120 ~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~  199 (751)
                      .||++.......    .....+.+.+|++.+.++.|-+ + ..|+|+|.|.++.+||+++++.+                
T Consensus       122 siy~ls~~d~~g----~~~v~r~l~gHtgylScC~f~d-D-~~ilT~SGD~TCalWDie~g~~~----------------  179 (343)
T KOG0286|consen  122 SIYPLSTRDAEG----NVRVSRELAGHTGYLSCCRFLD-D-NHILTGSGDMTCALWDIETGQQT----------------  179 (343)
T ss_pred             EEEecccccccc----cceeeeeecCccceeEEEEEcC-C-CceEecCCCceEEEEEcccceEE----------------
Confidence            999998652221    1244667899999999999987 5 45669999999999999998732                


Q ss_pred             cccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccc
Q 004468          200 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS  279 (751)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  279 (751)
                               ..+.+|...|.+++++|.+++.+++|+-|+..+|||+|...             |++.|       .||..
T Consensus       180 ---------~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~-------------c~qtF-------~ghes  230 (343)
T KOG0286|consen  180 ---------QVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQ-------------CVQTF-------EGHES  230 (343)
T ss_pred             ---------EEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcc-------------eeEee-------ccccc
Confidence                     33446889999999999889999999999999999999864             66666       55665


Q ss_pred             cceEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 004468          280 LHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (751)
Q Consensus       280 ~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~  311 (751)
                       -|++|.|.|+|.-+++|+.|++.++||++..
T Consensus       231 -DINsv~ffP~G~afatGSDD~tcRlyDlRaD  261 (343)
T KOG0286|consen  231 -DINSVRFFPSGDAFATGSDDATCRLYDLRAD  261 (343)
T ss_pred             -ccceEEEccCCCeeeecCCCceeEEEeecCC
Confidence             4999999999999999999999999999884

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=100.00  E-value=9.2e-37  Score=323.41  Aligned_cols=536  Identities=15%  Similarity=0.105  Sum_probs=366.5

Q ss_pred             ccccccchhhhccccccEEeccCCCcEEEEEECCCCC---EEEEEeCCCcEEEEeCCCC--eEEEEecccCCcceEEEEE
Q 004468           27 NHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGS---LLISGSDDTHINVWSYSSR--KLLHSIETGHSANVFCTKF  101 (751)
Q Consensus        27 ~~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~---~LaSgs~Dg~I~IWd~~~~--~~~~~l~~~h~~~V~~v~f  101 (751)
                      .+.+.+++..-.  ....+|.||.+.|+|+.|-|+.+   +|+||+.|++|++|.+...  .++.++ .+|...+.|+.-
T Consensus        33 ~~~Iav~dp~k~--~i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~-~g~~~~~~cv~a  109 (764)
T KOG1063|consen   33 GPAIAVADPEKI--LIVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTI-QGHCKECVCVVA  109 (764)
T ss_pred             CceEEEeCcccc--eeEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEee-cCcceeEEEEEe
Confidence            344455444322  45678999999999999999887   8999999999999998733  345556 567766666543


Q ss_pred             ecCCCCcEEEEEECCCcEEEEECCCCCCCCC----------------------------------------CCCCCCCce
Q 004468          102 VPETSDELVVSGAGDAEVRLFNLSRFSGRGL----------------------------------------DDNAITPSA  141 (751)
Q Consensus       102 sp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~----------------------------------------~~~~~~~~~  141 (751)
                      .+.    .....+.|++|.+||.+...--+.                                        ...+...+.
T Consensus       110 ~~~----~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~  185 (764)
T KOG1063|consen  110 RSS----VMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVA  185 (764)
T ss_pred             eee----EEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEE
Confidence            322    222237899999999953220000                                        111234566


Q ss_pred             eecccCCceeEEEEecCCC--CEEEEEeCCCcEEEEecCCCCCCCCC-----CCCCCccceEEEeccc--CceecccCCC
Q 004468          142 LYQCHTRRVKKLAVEVGNP--HVVWSASEDGTLRQHDFRQGSSCPPA-----GSSHQECRNILLDLRC--GAKRSLADPP  212 (751)
Q Consensus       142 ~~~~h~~~V~~l~~sp~~~--~~l~s~s~Dg~I~iwDlr~~~~~~~~-----~~~~~~~~~~l~~~~~--~~~~~~~~~~  212 (751)
                      .+.+|.+.|.+++|....+  .+|+|+|.|..||+|.+.-.......     .....+ ..++..+..  -.+..-....
T Consensus       186 el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~-~~~f~~l~~i~~~is~eall~  264 (764)
T KOG1063|consen  186 ELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSN-LPVFMILEEIQYRISFEALLM  264 (764)
T ss_pred             EeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccC-CceeeeeeeEEEEEehhhhhc
Confidence            7889999999999986443  47899999999999998765422100     000001 111111100  0001112345


Q ss_pred             CCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCC
Q 004468          213 KQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGE  292 (751)
Q Consensus       213 ~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~  292 (751)
                      +|..+|.++.|+|. +..|++++.|.++.+|.......+..              ....+.+.++........-|+|+++
T Consensus       265 GHeDWV~sv~W~p~-~~~LLSASaDksmiiW~pd~~tGiWv--------------~~vRlGe~gg~a~GF~g~lw~~n~~  329 (764)
T KOG1063|consen  265 GHEDWVYSVWWHPE-GLDLLSASADKSMIIWKPDENTGIWV--------------DVVRLGEVGGSAGGFWGGLWSPNSN  329 (764)
T ss_pred             CcccceEEEEEccc-hhhheecccCcceEEEecCCccceEE--------------EEEEeecccccccceeeEEEcCCCC
Confidence            79999999999995 67999999999999998775432211              1122333344444688999999999


Q ss_pred             EEEEEeCCCcEEEEECCCCC---cceeeeecCCCceeEEeCCCCCCcccCCCcccccccccccccccccCcchhHHHHHH
Q 004468          293 EVLLSYSGEHVYLMDVNHAG---GRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGEVATGLGKCRMLVEI  369 (751)
Q Consensus       293 ~Ll~~s~d~~I~lwdl~~~~---~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  369 (751)
                      .+++.+..|..++|......   ......+|-..++.+.|.|...-                +.   +.+.|+..+    
T Consensus       330 ~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGef----------------lL---svs~DQTTR----  386 (764)
T KOG1063|consen  330 VIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEF----------------LL---SVSLDQTTR----  386 (764)
T ss_pred             EEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCE----------------EE---Eecccccee----
Confidence            99999999999999833321   22333344555666666665432                11   222333322    


Q ss_pred             HHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcchHHHHHH
Q 004468          370 ARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSE  449 (751)
Q Consensus       370 ~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~a~~~~~~  449 (751)
                                                                           ++++.  ..+.-+++..+++.|.|.+.
T Consensus       387 -----------------------------------------------------lFa~w--g~q~~wHEiaRPQiHGyDl~  411 (764)
T KOG1063|consen  387 -----------------------------------------------------LFARW--GRQQEWHEIARPQIHGYDLT  411 (764)
T ss_pred             -----------------------------------------------------eeccc--ccccceeeecccccccccce
Confidence                                                                 22221  11122677889999999999


Q ss_pred             HHHHhc-chHHHHHHHHHhcccCCCChhhhHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCccccccch-hcccccCC
Q 004468          450 ALEQLC-KYKEALDFAIAAQCLDPSNSVMAEKVENIKKHIAAAETEKNNKANDGGARSEPRTGRVLSLSDI-IYRSEANS  527 (751)
Q Consensus       450 ~l~~l~-~~~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~  527 (751)
                      |+..+. +.++-..+.+++.+.|..+..+...+..+..        +  ...+....+.++..++++||++ +|..+.++
T Consensus       412 c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g--------~--~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~  481 (764)
T KOG1063|consen  412 CLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICG--------K--CFKGSDELPDGANVPALGLSNKAFFPGETNT  481 (764)
T ss_pred             eeehccCCceeeecccceeeeeecCcHHHHHHHHHHhC--------c--cccCchhcccccccccccccCCCCccccccc
Confidence            999998 8888888889999999988888766555443        0  1111122467788899999998 55333222


Q ss_pred             CCCCCCCCCCCCCCchhhhhhhcccCCCCCCCCCccccccccCccceeecccCCCccccccCCCCCC-------CCCCCC
Q 004468          528 DASQDGPRSEREDSDYDEEVEVDFHTSVPGDEGRDVEANFLHGSLNVRIHRRGDSARETVDANGSSG-------SPSSSS  600 (751)
Q Consensus       528 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~  600 (751)
                      .....          ...|.  -.........+|+.|.+..+..|+...++.|.+|.|-+|..++..       ++++..
T Consensus       482 G~~~~----------~~~et--~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~  549 (764)
T KOG1063|consen  482 GGEAA----------VCAET--PLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLK  549 (764)
T ss_pred             ccccc----------eeeec--ccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCc
Confidence            11100          00011  001111122357788888899999999999999999988887733       555556


Q ss_pred             CCCCCCCCccccccccceeecccccceeeeEeeeccCCCCEEEEccCCCcEEEEecCC----------------eeeeee
Q 004468          601 QNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQT----------------VVNCVQ  664 (751)
Q Consensus       601 ~~~~~~~~~~~~~~~~~~~~gh~~~~~~i~~~~~~~~~~~~v~sgs~dg~~~iW~~~~----------------~v~~v~  664 (751)
                      .+..+.+|...++..++.+.||.-++|.|+    |||||+||+|.|.|.++.+|++..                +|+.+.
T Consensus       550 ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~----FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcs  625 (764)
T KOG1063|consen  550 EHAVIRLWNTANWLQVQELEGHSLTVTRLA----FSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCS  625 (764)
T ss_pred             cceEEEEEeccchhhhheecccceEEEEEE----ECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcc
Confidence            889999999999999999999999999886    799999999999999999999765                899999


Q ss_pred             ccCCCceEEEEecCCceEEecCCCC
Q 004468          665 CHPFDCVVATSGIDNTIKIWTPSAS  689 (751)
Q Consensus       665 ~~p~~~~las~~~d~~v~~W~~~~~  689 (751)
                      |+|++.+|||||.|++||+|.-...
T Consensus       626 W~pde~~FaTaSRDK~VkVW~~~~~  650 (764)
T KOG1063|consen  626 WSPDEKYFATASRDKKVKVWEEPDL  650 (764)
T ss_pred             cCcccceeEEecCCceEEEEeccCc
Confidence            9999999999999999999986655

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.3e-34  Score=270.74  Aligned_cols=206  Identities=23%  Similarity=0.351  Sum_probs=178.1

Q ss_pred             ccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEE
Q 004468           42 QERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRL  121 (751)
Q Consensus        42 ~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~v  121 (751)
                      ..+.|..|++.|+++.|+-+|+|.++|+.|++|++|++..+.+++++ .+|...|..++.+.+  +..|++|+.|..|.+
T Consensus         9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktY-sghG~EVlD~~~s~D--nskf~s~GgDk~v~v   85 (307)
T KOG0316|consen    9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTY-SGHGHEVLDAALSSD--NSKFASCGGDKAVQV   85 (307)
T ss_pred             hceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeee-cCCCceeeecccccc--ccccccCCCCceEEE
Confidence            45678999999999999999999999999999999999999999999 899999999999988  689999999999999


Q ss_pred             EECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecc
Q 004468          122 FNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLR  201 (751)
Q Consensus       122 wd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~  201 (751)
                      ||+.++          +.++.+.+|...|+.++|+. +...++||+.|.++++||.|.....+                 
T Consensus        86 wDV~TG----------kv~Rr~rgH~aqVNtV~fNe-esSVv~SgsfD~s~r~wDCRS~s~eP-----------------  137 (307)
T KOG0316|consen   86 WDVNTG----------KVDRRFRGHLAQVNTVRFNE-ESSVVASGSFDSSVRLWDCRSRSFEP-----------------  137 (307)
T ss_pred             EEcccC----------eeeeecccccceeeEEEecC-cceEEEeccccceeEEEEcccCCCCc-----------------
Confidence            999986          56889999999999999987 67899999999999999999875321                 


Q ss_pred             cCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccc
Q 004468          202 CGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLH  281 (751)
Q Consensus       202 ~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  281 (751)
                            +.........|.++.++.   +.|++|+.||++|.||+|++.....+                    .||   +
T Consensus       138 ------iQildea~D~V~Si~v~~---heIvaGS~DGtvRtydiR~G~l~sDy--------------------~g~---p  185 (307)
T KOG0316|consen  138 ------IQILDEAKDGVSSIDVAE---HEIVAGSVDGTVRTYDIRKGTLSSDY--------------------FGH---P  185 (307)
T ss_pred             ------cchhhhhcCceeEEEecc---cEEEeeccCCcEEEEEeecceeehhh--------------------cCC---c
Confidence                  222222456788888874   68999999999999999988643221                    122   6


Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004468          282 LTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (751)
Q Consensus       282 vt~v~fspdg~~Ll~~s~d~~I~lwdl~~  310 (751)
                      |++++|++||+.+++++.|++++|.|-.+
T Consensus       186 it~vs~s~d~nc~La~~l~stlrLlDk~t  214 (307)
T KOG0316|consen  186 ITSVSFSKDGNCSLASSLDSTLRLLDKET  214 (307)
T ss_pred             ceeEEecCCCCEEEEeeccceeeecccch
Confidence            99999999999999999999888887544

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=1.9e-35  Score=297.67  Aligned_cols=223  Identities=22%  Similarity=0.287  Sum_probs=193.8

Q ss_pred             ccccccccchhhhccccccEEeccCCCcEEEEEECCC--CCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEe
Q 004468           25 DVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSK--GSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV  102 (751)
Q Consensus        25 ~~~~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~d--g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fs  102 (751)
                      .+...+++|..  ..+..+++|.||++.|.++.|+|.  +..||||+.||+|++|++.+..++..+ .+|...|..|+|+
T Consensus       194 swsG~~kvW~~--~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l-~gH~~RVs~VafH  270 (459)
T KOG0272|consen  194 SWSGLVKVWSV--PQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDL-EGHLARVSRVAFH  270 (459)
T ss_pred             ecCCceeEeec--CCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhh-hcchhhheeeeec
Confidence            34566777764  445789999999999999999996  669999999999999999988899999 8999999999999


Q ss_pred             cCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCC
Q 004468          103 PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSS  182 (751)
Q Consensus       103 p~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~  182 (751)
                      |+  |++|+|++.|.+-++||+.+.          ..+....||...|.+|+|.| +|.+++|||.|..-||||+|++.+
T Consensus       271 Ps--G~~L~TasfD~tWRlWD~~tk----------~ElL~QEGHs~~v~~iaf~~-DGSL~~tGGlD~~~RvWDlRtgr~  337 (459)
T KOG0272|consen  271 PS--GKFLGTASFDSTWRLWDLETK----------SELLLQEGHSKGVFSIAFQP-DGSLAATGGLDSLGRVWDLRTGRC  337 (459)
T ss_pred             CC--Cceeeecccccchhhcccccc----------hhhHhhcccccccceeEecC-CCceeeccCccchhheeecccCcE
Confidence            99  999999999999999999975          34667889999999999999 779999999999999999999873


Q ss_pred             CCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCC
Q 004468          183 CPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPP  262 (751)
Q Consensus       183 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~  262 (751)
                      +                         .+..+|..+|.+++|+| +|..|+||+.|++++|||+|+.+.+..+        
T Consensus       338 i-------------------------m~L~gH~k~I~~V~fsP-NGy~lATgs~Dnt~kVWDLR~r~~ly~i--------  383 (459)
T KOG0272|consen  338 I-------------------------MFLAGHIKEILSVAFSP-NGYHLATGSSDNTCKVWDLRMRSELYTI--------  383 (459)
T ss_pred             E-------------------------EEecccccceeeEeECC-CceEEeecCCCCcEEEeeecccccceec--------
Confidence            2                         23345888999999999 5899999999999999999987754332        


Q ss_pred             ccccccccccccCCccccceEEEEEcC-CCCEEEEEeCCCcEEEEECCC
Q 004468          263 CVNYFCPMHLSEHGRSSLHLTHVTFSP-NGEEVLLSYSGEHVYLMDVNH  310 (751)
Q Consensus       263 ~~~~~~~~~~~~~g~~~~~vt~v~fsp-dg~~Ll~~s~d~~I~lwdl~~  310 (751)
                            |.      |.+ -|+.|.|+| .|.+|++++.|++++||...+
T Consensus       384 ------pA------H~n-lVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~  419 (459)
T KOG0272|consen  384 ------PA------HSN-LVSQVKYSPQEGYFLVTASYDNTVKIWSTRT  419 (459)
T ss_pred             ------cc------ccc-hhhheEecccCCeEEEEcccCcceeeecCCC
Confidence                  33      444 399999999 788999999999999996544

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=1.3e-32  Score=263.83  Aligned_cols=214  Identities=22%  Similarity=0.291  Sum_probs=181.0

Q ss_pred             cccccEEeccCCCcEEEEEECCC-CCEEEEEeCCCcEEEEeCC-----CCeEEEEecccCCcceEEEEEecCCCCcEEEE
Q 004468           39 RLSQERELEGHQGCVNAISWNSK-GSLLISGSDDTHINVWSYS-----SRKLLHSIETGHSANVFCTKFVPETSDELVVS  112 (751)
Q Consensus        39 ~~~~~~~L~gH~~~V~~l~~s~d-g~~LaSgs~Dg~I~IWd~~-----~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~s  112 (751)
                      .+.+.-+|+||++.|..++..+. .+.|++++.|+++++|++.     .|..++.+ .||...|..+..+++  +++.+|
T Consensus         4 ~l~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~-~GHsH~v~dv~~s~d--g~~alS   80 (315)
T KOG0279|consen    4 QLVLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRL-TGHSHFVSDVVLSSD--GNFALS   80 (315)
T ss_pred             hheeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeee-eccceEecceEEccC--CceEEe
Confidence            45566789999999999999986 5699999999999999875     45667777 899999999999999  899999


Q ss_pred             EECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCc
Q 004468          113 GAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQE  192 (751)
Q Consensus       113 gs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~  192 (751)
                      ++.|+++++||+..+          ++.+.|.+|..-|.+++|++ +...++||+.|++|++|++-.....         
T Consensus        81 ~swD~~lrlWDl~~g----------~~t~~f~GH~~dVlsva~s~-dn~qivSGSrDkTiklwnt~g~ck~---------  140 (315)
T KOG0279|consen   81 ASWDGTLRLWDLATG----------ESTRRFVGHTKDVLSVAFST-DNRQIVSGSRDKTIKLWNTLGVCKY---------  140 (315)
T ss_pred             ccccceEEEEEecCC----------cEEEEEEecCCceEEEEecC-CCceeecCCCcceeeeeeecccEEE---------
Confidence            999999999999975          56889999999999999999 5578889999999999998764311         


Q ss_pred             cceEEEecccCceecccCCCCCccceEEEEEeCCC-CcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccc
Q 004468          193 CRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR-PHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMH  271 (751)
Q Consensus       193 ~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~-~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (751)
                         .+           . ...+..+|.|+.|+|.. .-+|++++.|++|++||+++.+....+                 
T Consensus       141 ---t~-----------~-~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~-----------------  188 (315)
T KOG0279|consen  141 ---TI-----------H-EDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTF-----------------  188 (315)
T ss_pred             ---EE-----------e-cCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhcc-----------------
Confidence               11           0 11126799999999964 569999999999999999987643322                 


Q ss_pred             cccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 004468          272 LSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (751)
Q Consensus       272 ~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~  311 (751)
                         .||.. .++.+++||||..+++|+.||.+.|||++.+
T Consensus       189 ---~gh~~-~v~t~~vSpDGslcasGgkdg~~~LwdL~~~  224 (315)
T KOG0279|consen  189 ---IGHSG-YVNTVTVSPDGSLCASGGKDGEAMLWDLNEG  224 (315)
T ss_pred             ---ccccc-cEEEEEECCCCCEEecCCCCceEEEEEccCC
Confidence               34555 4999999999999999999999999999985

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=2.1e-32  Score=261.39  Aligned_cols=219  Identities=21%  Similarity=0.317  Sum_probs=183.6

Q ss_pred             cccccEEeccCCCcEEEEEECCC-CCEEEEEeCCCcEEEEeCCC---CeEEEEecccCCcceEEEEEecCCCCcEEEEEE
Q 004468           39 RLSQERELEGHQGCVNAISWNSK-GSLLISGSDDTHINVWSYSS---RKLLHSIETGHSANVFCTKFVPETSDELVVSGA  114 (751)
Q Consensus        39 ~~~~~~~L~gH~~~V~~l~~s~d-g~~LaSgs~Dg~I~IWd~~~---~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs  114 (751)
                      ++-.++.++||++.|+.++|+|- |.+|||||.|+.|+||+...   ..+...+..+|+..|.+++|+|.  |++|++||
T Consensus         3 ~l~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~--g~~La~aS   80 (312)
T KOG0645|consen    3 RLILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPH--GRYLASAS   80 (312)
T ss_pred             cceeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCC--CcEEEEee
Confidence            36678899999999999999998 99999999999999999874   45666676789999999999999  89999999


Q ss_pred             CCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccc
Q 004468          115 GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECR  194 (751)
Q Consensus       115 ~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~  194 (751)
                      .|.++.||.-..+        .++++.++.+|...|++++|++ ++.+||+|+.|++|-||.+....        +.+|.
T Consensus        81 FD~t~~Iw~k~~~--------efecv~~lEGHEnEVK~Vaws~-sG~~LATCSRDKSVWiWe~dedd--------Efec~  143 (312)
T KOG0645|consen   81 FDATVVIWKKEDG--------EFECVATLEGHENEVKCVAWSA-SGNYLATCSRDKSVWIWEIDEDD--------EFECI  143 (312)
T ss_pred             ccceEEEeecCCC--------ceeEEeeeeccccceeEEEEcC-CCCEEEEeeCCCeEEEEEecCCC--------cEEEE
Confidence            9999999987643        2477999999999999999999 78999999999999999987543        23444


Q ss_pred             eEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCcccccccccccc
Q 004468          195 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSE  274 (751)
Q Consensus       195 ~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (751)
                      .++              ..|...|+.+.|+|. ..+|++++.|++|++|+......          =.|++.+       
T Consensus       144 aVL--------------~~HtqDVK~V~WHPt-~dlL~S~SYDnTIk~~~~~~ddd----------W~c~~tl-------  191 (312)
T KOG0645|consen  144 AVL--------------QEHTQDVKHVIWHPT-EDLLFSCSYDNTIKVYRDEDDDD----------WECVQTL-------  191 (312)
T ss_pred             eee--------------ccccccccEEEEcCC-cceeEEeccCCeEEEEeecCCCC----------eeEEEEe-------
Confidence            443              347788999999995 68999999999999998763110          0133333       


Q ss_pred             CCccccceEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 004468          275 HGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVN  309 (751)
Q Consensus       275 ~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~  309 (751)
                      .+|.+ .|.+++|++.|..|++++.|++|+||-..
T Consensus       192 ~g~~~-TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~  225 (312)
T KOG0645|consen  192 DGHEN-TVWSLAFDNIGSRLVSCSDDGTVSIWRLY  225 (312)
T ss_pred             cCccc-eEEEEEecCCCceEEEecCCcceEeeeec
Confidence            45555 69999999999999999999999999754

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=8.5e-34  Score=284.36  Aligned_cols=199  Identities=24%  Similarity=0.396  Sum_probs=168.8

Q ss_pred             CCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCC
Q 004468           50 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSG  129 (751)
Q Consensus        50 ~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~  129 (751)
                      +-.|+.|.|.|+|+.|++|+..|.+.+|+.... .-.++.+.|...|.++.|+++  +.+++||+.+|.|++|+...   
T Consensus        96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~f-nFEtilQaHDs~Vr~m~ws~~--g~wmiSgD~gG~iKyWqpnm---  169 (464)
T KOG0284|consen   96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSF-NFETILQAHDSPVRTMKWSHN--GTWMISGDKGGMIKYWQPNM---  169 (464)
T ss_pred             ccceeeEEEcCCCceeEeecccccEEEecCcee-eHHHHhhhhcccceeEEEccC--CCEEEEcCCCceEEecccch---
Confidence            457999999999999999999999999997432 223344799999999999999  89999999999999999985   


Q ss_pred             CCCCCCCCCCceeecccC-CceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecc
Q 004468          130 RGLDDNAITPSALYQCHT-RRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSL  208 (751)
Q Consensus       130 ~~~~~~~~~~~~~~~~h~-~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  208 (751)
                              ..++.++.|. ..|++++|+| +...|++||+||+|+|||++..+.-.                        
T Consensus       170 --------nnVk~~~ahh~eaIRdlafSp-nDskF~t~SdDg~ikiWdf~~~kee~------------------------  216 (464)
T KOG0284|consen  170 --------NNVKIIQAHHAEAIRDLAFSP-NDSKFLTCSDDGTIKIWDFRMPKEER------------------------  216 (464)
T ss_pred             --------hhhHHhhHhhhhhhheeccCC-CCceeEEecCCCeEEEEeccCCchhh------------------------
Confidence                    3356666665 9999999999 45678899999999999999876321                        


Q ss_pred             cCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEc
Q 004468          209 ADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFS  288 (751)
Q Consensus       209 ~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fs  288 (751)
                       ...+|...|++++|+|. ..+|++|+.|..|++||.+++..+.++                    .+|.+ .|+.+.|+
T Consensus       217 -vL~GHgwdVksvdWHP~-kgLiasgskDnlVKlWDprSg~cl~tl--------------------h~HKn-tVl~~~f~  273 (464)
T KOG0284|consen  217 -VLRGHGWDVKSVDWHPT-KGLIASGSKDNLVKLWDPRSGSCLATL--------------------HGHKN-TVLAVKFN  273 (464)
T ss_pred             -eeccCCCCcceeccCCc-cceeEEccCCceeEeecCCCcchhhhh--------------------hhccc-eEEEEEEc
Confidence             11347788999999996 579999999999999999998765543                    44555 59999999


Q ss_pred             CCCCEEEEEeCCCcEEEEECCC
Q 004468          289 PNGEEVLLSYSGEHVYLMDVNH  310 (751)
Q Consensus       289 pdg~~Ll~~s~d~~I~lwdl~~  310 (751)
                      |++++|++++.|..+++||+++
T Consensus       274 ~n~N~Llt~skD~~~kv~DiR~  295 (464)
T KOG0284|consen  274 PNGNWLLTGSKDQSCKVFDIRT  295 (464)
T ss_pred             CCCCeeEEccCCceEEEEehhH
Confidence            9999999999999999999876

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=3.4e-32  Score=302.65  Aligned_cols=214  Identities=27%  Similarity=0.445  Sum_probs=180.1

Q ss_pred             cccEEeccC-CCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCe--EEEEecccCCcceEEEEEecCCCCcEEEEEECCC
Q 004468           41 SQERELEGH-QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK--LLHSIETGHSANVFCTKFVPETSDELVVSGAGDA  117 (751)
Q Consensus        41 ~~~~~L~gH-~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~--~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg  117 (751)
                      ..+..+.+| ...|.++.|+++|+.|++++.|+.+++|+..+.+  .+..+ .+|...|++++|+|+  ++++++|+.|+
T Consensus       149 ~~~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l-~~h~~~v~~~~fs~d--~~~l~s~s~D~  225 (456)
T KOG0266|consen  149 SLEQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLREL-SGHTRGVSDVAFSPD--GSYLLSGSDDK  225 (456)
T ss_pred             eeeeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccc-cccccceeeeEECCC--CcEEEEecCCc
Confidence            346667666 8899999999999999999999999999997777  66666 799999999999999  78999999999


Q ss_pred             cEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEE
Q 004468          118 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNIL  197 (751)
Q Consensus       118 ~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l  197 (751)
                      +|+|||+... +        ..++++.+|...|++++|+|.+ +++++|+.|++|++||+++++..              
T Consensus       226 tiriwd~~~~-~--------~~~~~l~gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~~~--------------  281 (456)
T KOG0266|consen  226 TLRIWDLKDD-G--------RNLKTLKGHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTGECV--------------  281 (456)
T ss_pred             eEEEeeccCC-C--------eEEEEecCCCCceEEEEecCCC-CEEEEecCCCcEEEEeccCCeEE--------------
Confidence            9999999432 1        4588999999999999999955 99999999999999999996532              


Q ss_pred             EecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCc
Q 004468          198 LDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGR  277 (751)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  277 (751)
                                 .....|...|++++|++ ++++|++++.|+.|+|||+.++...           |.+.+       .++
T Consensus       282 -----------~~l~~hs~~is~~~f~~-d~~~l~s~s~d~~i~vwd~~~~~~~-----------~~~~~-------~~~  331 (456)
T KOG0266|consen  282 -----------RKLKGHSDGISGLAFSP-DGNLLVSASYDGTIRVWDLETGSKL-----------CLKLL-------SGA  331 (456)
T ss_pred             -----------EeeeccCCceEEEEECC-CCCEEEEcCCCccEEEEECCCCcee-----------eeecc-------cCC
Confidence                       22344788999999999 4799999999999999999987621           11111       112


Q ss_pred             ccc-ceEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 004468          278 SSL-HLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (751)
Q Consensus       278 ~~~-~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~  311 (751)
                      ... +++++.|+|+|.+|++++.|+.+++||+..+
T Consensus       332 ~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~  366 (456)
T KOG0266|consen  332 ENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSG  366 (456)
T ss_pred             CCCCceeEEEECCCCcEEEEecCCCeEEEEEccCC
Confidence            222 5899999999999999999999999998873

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=7.9e-33  Score=273.98  Aligned_cols=180  Identities=17%  Similarity=0.285  Sum_probs=162.1

Q ss_pred             ccchhhhccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEE
Q 004468           31 QMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELV  110 (751)
Q Consensus        31 ~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l  110 (751)
                      +....++.+..+.+.|.||...|+.+-|.|+-.++++++.|++|++||..++++...+ +||+..|++|+|...  |++|
T Consensus        89 ~~~~~wipRp~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~L-rGHt~sv~di~~~a~--Gk~l  165 (406)
T KOG0295|consen   89 RTPALWIPRPNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSL-RGHTDSVFDISFDAS--GKYL  165 (406)
T ss_pred             cChhhcCCCCCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhh-hccccceeEEEEecC--ccEE
Confidence            4445688898999999999999999999999999999999999999999999998888 899999999999988  8999


Q ss_pred             EEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCC
Q 004468          111 VSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSH  190 (751)
Q Consensus       111 ~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~  190 (751)
                      ++|+.|-.+++||....         .++++.+.+|...|.+++|-| .+.+++|++.|.+|++|++.++-+        
T Consensus       166 ~tcSsDl~~~LWd~~~~---------~~c~ks~~gh~h~vS~V~f~P-~gd~ilS~srD~tik~We~~tg~c--------  227 (406)
T KOG0295|consen  166 ATCSSDLSAKLWDFDTF---------FRCIKSLIGHEHGVSSVFFLP-LGDHILSCSRDNTIKAWECDTGYC--------  227 (406)
T ss_pred             EecCCccchhheeHHHH---------HHHHHHhcCcccceeeEEEEe-cCCeeeecccccceeEEeccccee--------
Confidence            99999999999999863         256888899999999999999 568999999999999999998753        


Q ss_pred             CccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCC
Q 004468          191 QECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP  249 (751)
Q Consensus       191 ~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~  249 (751)
                                       +..+++|..+|..++.+. |+.++++++.|.+|++|-..+.+
T Consensus       228 -----------------v~t~~~h~ewvr~v~v~~-DGti~As~s~dqtl~vW~~~t~~  268 (406)
T KOG0295|consen  228 -----------------VKTFPGHSEWVRMVRVNQ-DGTIIASCSNDQTLRVWVVATKQ  268 (406)
T ss_pred             -----------------EEeccCchHhEEEEEecC-CeeEEEecCCCceEEEEEeccch
Confidence                             334556778999999999 58999999999999999988764

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=6.3e-32  Score=254.84  Aligned_cols=188  Identities=18%  Similarity=0.299  Sum_probs=156.6

Q ss_pred             CEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCcee
Q 004468           63 SLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSAL  142 (751)
Q Consensus        63 ~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~  142 (751)
                      -+|||+|.|.+|++|...+|.+..++ +-..+.|+.+...|+  +..||+++ ...||+||+.+...        .|+.+
T Consensus        11 viLvsA~YDhTIRfWqa~tG~C~rTi-qh~dsqVNrLeiTpd--k~~LAaa~-~qhvRlyD~~S~np--------~Pv~t   78 (311)
T KOG0315|consen   11 VILVSAGYDHTIRFWQALTGICSRTI-QHPDSQVNRLEITPD--KKDLAAAG-NQHVRLYDLNSNNP--------NPVAT   78 (311)
T ss_pred             eEEEeccCcceeeeeehhcCeEEEEE-ecCccceeeEEEcCC--cchhhhcc-CCeeEEEEccCCCC--------CceeE
Confidence            48999999999999999999999999 556788999999999  67777765 47899999997532        57999


Q ss_pred             ecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEE
Q 004468          143 YQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCD  222 (751)
Q Consensus       143 ~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~  222 (751)
                      +.+|+..|+.+.|.. +++.+.|||+||+++|||+|.....                          ..-.+..+|+++.
T Consensus        79 ~e~h~kNVtaVgF~~-dgrWMyTgseDgt~kIWdlR~~~~q--------------------------R~~~~~spVn~vv  131 (311)
T KOG0315|consen   79 FEGHTKNVTAVGFQC-DGRWMYTGSEDGTVKIWDLRSLSCQ--------------------------RNYQHNSPVNTVV  131 (311)
T ss_pred             EeccCCceEEEEEee-cCeEEEecCCCceEEEEeccCcccc--------------------------hhccCCCCcceEE
Confidence            999999999999998 7799999999999999999985421                          1112557899999


Q ss_pred             EeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCc
Q 004468          223 ISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEH  302 (751)
Q Consensus       223 ~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~  302 (751)
                      .+|. ...|++|..+|.|++||++.....             ....|-..       ..|.+++..|||.+|+++...|.
T Consensus       132 lhpn-QteLis~dqsg~irvWDl~~~~c~-------------~~liPe~~-------~~i~sl~v~~dgsml~a~nnkG~  190 (311)
T KOG0315|consen  132 LHPN-QTELISGDQSGNIRVWDLGENSCT-------------HELIPEDD-------TSIQSLTVMPDGSMLAAANNKGN  190 (311)
T ss_pred             ecCC-cceEEeecCCCcEEEEEccCCccc-------------cccCCCCC-------cceeeEEEcCCCcEEEEecCCcc
Confidence            9995 678999999999999999875322             22222111       25999999999999999999999


Q ss_pred             EEEEECCC
Q 004468          303 VYLMDVNH  310 (751)
Q Consensus       303 I~lwdl~~  310 (751)
                      .|+|++-+
T Consensus       191 cyvW~l~~  198 (311)
T KOG0315|consen  191 CYVWRLLN  198 (311)
T ss_pred             EEEEEccC
Confidence            99999766

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=3.1e-32  Score=291.27  Aligned_cols=272  Identities=20%  Similarity=0.243  Sum_probs=199.7

Q ss_pred             hccccccEEecc-CCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEEC
Q 004468           37 VRRLSQERELEG-HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG  115 (751)
Q Consensus        37 i~~~~~~~~L~g-H~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~  115 (751)
                      +.+.++++.++. |+++|..++|+|.|.+||+|+.|+.|+|||+..+.+.+.| .||.+.|.++.|.|+.+-.+|++|+.
T Consensus        91 L~tgk~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~f-kG~gGvVssl~F~~~~~~~lL~sg~~  169 (775)
T KOG0319|consen   91 LPTGKLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSF-KGHGGVVSSLLFHPHWNRWLLASGAT  169 (775)
T ss_pred             cccchHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEe-cCCCceEEEEEeCCccchhheeecCC
Confidence            566688899998 9999999999999999999999999999999999999999 89999999999999965567899999


Q ss_pred             CCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCC--------
Q 004468          116 DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAG--------  187 (751)
Q Consensus       116 Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~--------  187 (751)
                      |++|++||+....         .++.++..|...|++++|++ ++..++++|.|..|.+||+.+.+......        
T Consensus       170 D~~v~vwnl~~~~---------tcl~~~~~H~S~vtsL~~~~-d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~v  239 (775)
T KOG0319|consen  170 DGTVRVWNLNDKR---------TCLHTMILHKSAVTSLAFSE-DSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESV  239 (775)
T ss_pred             CceEEEEEcccCc---------hHHHHHHhhhhheeeeeecc-CCceEEEeccCcEEEEeehhhhhhhheechhhheeeE
Confidence            9999999998532         34788899999999999999 56778899999999999985543220000        


Q ss_pred             --------------------------------------CC----------------------------------------
Q 004468          188 --------------------------------------SS----------------------------------------  189 (751)
Q Consensus       188 --------------------------------------~~----------------------------------------  189 (751)
                                                            ..                                        
T Consensus       240 v~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~i  319 (775)
T KOG0319|consen  240 VRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQI  319 (775)
T ss_pred             EEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhh
Confidence                                                  00                                        


Q ss_pred             ----------------------------------------------------------------CCccceEEEecc--cC
Q 004468          190 ----------------------------------------------------------------HQECRNILLDLR--CG  203 (751)
Q Consensus       190 ----------------------------------------------------------------~~~~~~~l~~~~--~~  203 (751)
                                                                                      ..++..++|.+.  ..
T Consensus       320 vG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~  399 (775)
T KOG0319|consen  320 VGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCS  399 (775)
T ss_pred             cCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcc
Confidence                                                                            000000011110  00


Q ss_pred             ceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceE
Q 004468          204 AKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLT  283 (751)
Q Consensus       204 ~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt  283 (751)
                      ....+....+|...|.+++++..+..+|++++.|.+|++|++...++...       +...+.    ......|.. .|+
T Consensus       400 ~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~-------~~~~~~----~~t~~aHdK-dIN  467 (775)
T KOG0319|consen  400 KSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAF-------PIVLTC----RYTERAHDK-DIN  467 (775)
T ss_pred             hhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccc-------cceehh----hHHHHhhcc-ccc
Confidence            00111222357777888888887778999999999999999987332211       111100    011123333 499


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECCCCCcceeeeecCCCceeEEeCC
Q 004468          284 HVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTP  331 (751)
Q Consensus       284 ~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp  331 (751)
                      +|+++|+.+.+++|+.|.+.+||++.......+..+|..-+..+.|+|
T Consensus       468 ~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~  515 (775)
T KOG0319|consen  468 CVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSK  515 (775)
T ss_pred             ceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEecc
Confidence            999999999999999999999999997655555555555555555555

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=7.9e-31  Score=270.57  Aligned_cols=145  Identities=17%  Similarity=0.318  Sum_probs=124.3

Q ss_pred             ccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEec--ccCCcceEEEEEecCCCCcEEEEEEC
Q 004468           38 RRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIE--TGHSANVFCTKFVPETSDELVVSGAG  115 (751)
Q Consensus        38 ~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~--~~h~~~V~~v~fsp~s~~~~l~sgs~  115 (751)
                      ..++...+++.|+.-|+|+.|+|||+++||++.||+|.|||-.++..+..+.  .+|++.|++++|+|+  +..|+|++.
T Consensus       178 PPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPD--s~~~~T~Sa  255 (603)
T KOG0318|consen  178 PPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPD--STQFLTVSA  255 (603)
T ss_pred             CCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCC--CceEEEecC
Confidence            3456778889999999999999999999999999999999999999999882  389999999999999  699999999


Q ss_pred             CCcEEEEECCCCCCCCC---------------------------------CCCCCCCceeecccCCceeEEEEecCCCCE
Q 004468          116 DAEVRLFNLSRFSGRGL---------------------------------DDNAITPSALYQCHTRRVKKLAVEVGNPHV  162 (751)
Q Consensus       116 Dg~V~vwd~~~~~~~~~---------------------------------~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~  162 (751)
                      |.+++|||+.+......                                 ......+++++.+|...|+++..+| ++..
T Consensus       256 Dkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~-d~~~  334 (603)
T KOG0318|consen  256 DKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSP-DGKT  334 (603)
T ss_pred             CceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcC-CCCE
Confidence            99999999986432110                                 1122347788999999999999999 5588


Q ss_pred             EEEEeCCCcEEEEecCCCCCCCC
Q 004468          163 VWSASEDGTLRQHDFRQGSSCPP  185 (751)
Q Consensus       163 l~s~s~Dg~I~iwDlr~~~~~~~  185 (751)
                      |.||+.||.|.-||..++...+.
T Consensus       335 i~SgsyDG~I~~W~~~~g~~~~~  357 (603)
T KOG0318|consen  335 IYSGSYDGHINSWDSGSGTSDRL  357 (603)
T ss_pred             EEeeccCceEEEEecCCcccccc
Confidence            99999999999999999876543

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.98  E-value=4.4e-31  Score=260.49  Aligned_cols=214  Identities=19%  Similarity=0.256  Sum_probs=181.1

Q ss_pred             hhhccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEE
Q 004468           35 SLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGA  114 (751)
Q Consensus        35 ~~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs  114 (751)
                      .+-...++.+.++||.+-|.||++.|..++|+||+.|++|+|||+.+|++..++ +||...|..|++++-  -.|+++++
T Consensus       136 eWHapwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkltl-tGhi~~vr~vavS~r--HpYlFs~g  212 (460)
T KOG0285|consen  136 EWHAPWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTL-TGHIETVRGVAVSKR--HPYLFSAG  212 (460)
T ss_pred             cccCcceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEee-cchhheeeeeeeccc--CceEEEec
Confidence            455667888999999999999999999999999999999999999999999999 999999999999999  48999999


Q ss_pred             CCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccc
Q 004468          115 GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECR  194 (751)
Q Consensus       115 ~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~  194 (751)
                      .|+.|+.||++..          +.++.+.+|-..|.+++.+|.. ..|++|+.|.++|+||+|+...            
T Consensus       213 edk~VKCwDLe~n----------kvIR~YhGHlS~V~~L~lhPTl-dvl~t~grDst~RvWDiRtr~~------------  269 (460)
T KOG0285|consen  213 EDKQVKCWDLEYN----------KVIRHYHGHLSGVYCLDLHPTL-DVLVTGGRDSTIRVWDIRTRAS------------  269 (460)
T ss_pred             CCCeeEEEechhh----------hhHHHhccccceeEEEeccccc-eeEEecCCcceEEEeeecccce------------
Confidence            9999999999975          5688999999999999999954 7899999999999999999752            


Q ss_pred             eEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCcccccccccccc
Q 004468          195 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSE  274 (751)
Q Consensus       195 ~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (751)
                                   +....+|...|.++.+.|.+ -.+++|+.|++||+||++.++....+                    
T Consensus       270 -------------V~~l~GH~~~V~~V~~~~~d-pqvit~S~D~tvrlWDl~agkt~~tl--------------------  315 (460)
T KOG0285|consen  270 -------------VHVLSGHTNPVASVMCQPTD-PQVITGSHDSTVRLWDLRAGKTMITL--------------------  315 (460)
T ss_pred             -------------EEEecCCCCcceeEEeecCC-CceEEecCCceEEEeeeccCceeEee--------------------
Confidence                         33445688899999999975 47999999999999999987643221                    


Q ss_pred             CCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004468          275 HGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (751)
Q Consensus       275 ~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~  310 (751)
                       -|+...|.+++.+|....+++++.| .|+-|++..
T Consensus       316 -t~hkksvral~lhP~e~~fASas~d-nik~w~~p~  349 (460)
T KOG0285|consen  316 -THHKKSVRALCLHPKENLFASASPD-NIKQWKLPE  349 (460)
T ss_pred             -ecccceeeEEecCCchhhhhccCCc-cceeccCCc
Confidence             1223358889999988777776665 455555433

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.98  E-value=2.2e-30  Score=309.15  Aligned_cols=205  Identities=18%  Similarity=0.252  Sum_probs=164.0

Q ss_pred             eccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCC----e----EEEEecccCCcceEEEEEecCCCCcEEEEEECCC
Q 004468           46 LEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSR----K----LLHSIETGHSANVFCTKFVPETSDELVVSGAGDA  117 (751)
Q Consensus        46 L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~----~----~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg  117 (751)
                      +.+|.+.|++++|+|+|++||||+.|++|+||+....    .    ....+  .+...|.+++|+|.. +.+|++++.|+
T Consensus       479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~--~~~~~v~~l~~~~~~-~~~las~~~Dg  555 (793)
T PLN00181        479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVEL--ASRSKLSGICWNSYI-KSQVASSNFEG  555 (793)
T ss_pred             ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEe--cccCceeeEEeccCC-CCEEEEEeCCC
Confidence            4569999999999999999999999999999997532    1    12223  345689999999864 68999999999


Q ss_pred             cEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEE
Q 004468          118 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNIL  197 (751)
Q Consensus       118 ~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l  197 (751)
                      +|+|||+.+.          +.+..+.+|...|++++|+|.++.+|+||+.||+|++||++++...           ..+
T Consensus       556 ~v~lWd~~~~----------~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~-----------~~~  614 (793)
T PLN00181        556 VVQVWDVARS----------QLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSI-----------GTI  614 (793)
T ss_pred             eEEEEECCCC----------eEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEE-----------EEE
Confidence            9999999864          4577888999999999999867889999999999999999876421           111


Q ss_pred             EecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCc
Q 004468          198 LDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGR  277 (751)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  277 (751)
                      .               ....+.++.|++.++.+|++|+.|+.|++||+++....            ...+       .+|
T Consensus       615 ~---------------~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~------------~~~~-------~~h  660 (793)
T PLN00181        615 K---------------TKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLP------------LCTM-------IGH  660 (793)
T ss_pred             e---------------cCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCcc------------ceEe-------cCC
Confidence            0               12468899997767899999999999999999864310            0111       234


Q ss_pred             cccceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004468          278 SSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (751)
Q Consensus       278 ~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~  310 (751)
                      .. .|+++.|. ++.+|++++.|+.|+|||+..
T Consensus       661 ~~-~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~  691 (793)
T PLN00181        661 SK-TVSYVRFV-DSSTLVSSSTDNTLKLWDLSM  691 (793)
T ss_pred             CC-CEEEEEEe-CCCEEEEEECCCEEEEEeCCC
Confidence            43 59999997 788999999999999999865

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.98  E-value=7e-30  Score=250.16  Aligned_cols=216  Identities=22%  Similarity=0.351  Sum_probs=173.5

Q ss_pred             ccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEEC--
Q 004468           38 RRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG--  115 (751)
Q Consensus        38 ~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~--  115 (751)
                      +++++.+.+..-.+.|++|.|+++|.+|++++.|-+++|||..+++++.++ ..++..|..++|...  ...++.++.  
T Consensus         2 ~s~~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti-~skkyG~~~~~Fth~--~~~~i~sStk~   78 (311)
T KOG1446|consen    2 RSFRPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTI-NSKKYGVDLACFTHH--SNTVIHSSTKE   78 (311)
T ss_pred             cccccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEe-ecccccccEEEEecC--CceEEEccCCC
Confidence            456777888888899999999999999999999999999999999999999 778889999999988  456665555  


Q ss_pred             CCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccce
Q 004468          116 DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRN  195 (751)
Q Consensus       116 Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~  195 (751)
                      |.+||.-++...          +.++.|.||...|.+|+.+| .+..|+|++.|++|++||+|..++.           .
T Consensus        79 d~tIryLsl~dN----------kylRYF~GH~~~V~sL~~sP-~~d~FlS~S~D~tvrLWDlR~~~cq-----------g  136 (311)
T KOG1446|consen   79 DDTIRYLSLHDN----------KYLRYFPGHKKRVNSLSVSP-KDDTFLSSSLDKTVRLWDLRVKKCQ-----------G  136 (311)
T ss_pred             CCceEEEEeecC----------ceEEEcCCCCceEEEEEecC-CCCeEEecccCCeEEeeEecCCCCc-----------e
Confidence            899999999875          66999999999999999999 4588999999999999999976532           1


Q ss_pred             EEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccC
Q 004468          196 ILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEH  275 (751)
Q Consensus       196 ~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (751)
                      .+                +...-..++|.|. |-++|++.....|+|||+|+...-           ....|....    
T Consensus       137 ~l----------------~~~~~pi~AfDp~-GLifA~~~~~~~IkLyD~Rs~dkg-----------PF~tf~i~~----  184 (311)
T KOG1446|consen  137 LL----------------NLSGRPIAAFDPE-GLIFALANGSELIKLYDLRSFDKG-----------PFTTFSITD----  184 (311)
T ss_pred             EE----------------ecCCCcceeECCC-CcEEEEecCCCeEEEEEecccCCC-----------CceeEccCC----
Confidence            11                1122345789995 788888888889999999986421           112221111    


Q ss_pred             CccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 004468          276 GRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (751)
Q Consensus       276 g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~  311 (751)
                       ......+.+.|||||++|+.++..+.+++.|.-+|
T Consensus       185 -~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G  219 (311)
T KOG1446|consen  185 -NDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDG  219 (311)
T ss_pred             -CCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCC
Confidence             11124899999999999999999999999986664

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.98  E-value=2.3e-31  Score=290.56  Aligned_cols=219  Identities=20%  Similarity=0.333  Sum_probs=174.2

Q ss_pred             hccccccEEec-cCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCC--------------------------------C-
Q 004468           37 VRRLSQERELE-GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSS--------------------------------R-   82 (751)
Q Consensus        37 i~~~~~~~~L~-gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~--------------------------------~-   82 (751)
                      +..+...+++. .|++.|+++.||+||+||||||.|+.|+||.+..                                . 
T Consensus       253 lsal~~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~  332 (712)
T KOG0283|consen  253 LSALTVVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKI  332 (712)
T ss_pred             ceeeEEeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccc
Confidence            44455667777 9999999999999999999999999999998654                                0 


Q ss_pred             ---------------------------eEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCC
Q 004468           83 ---------------------------KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDN  135 (751)
Q Consensus        83 ---------------------------~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~  135 (751)
                                                 ++++.+ .||.+.|.+|.|+.+   ++|+|+|.|.+||||++...        
T Consensus       333 ~~~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef-~GHt~DILDlSWSKn---~fLLSSSMDKTVRLWh~~~~--------  400 (712)
T KOG0283|consen  333 SSRTSSSRKGSQSPCVLLPLKAFVFSEKPFCEF-KGHTADILDLSWSKN---NFLLSSSMDKTVRLWHPGRK--------  400 (712)
T ss_pred             cccccccccccCCccccCCCccccccccchhhh-hccchhheecccccC---CeeEeccccccEEeecCCCc--------
Confidence                                       011112 699999999999987   79999999999999999864        


Q ss_pred             CCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCc
Q 004468          136 AITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQT  215 (751)
Q Consensus       136 ~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  215 (751)
                        .++++|. |.+.|+||+|+|.|.++|+||+-||.||||++-..+             .+.|.             .-.
T Consensus       401 --~CL~~F~-HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~-------------Vv~W~-------------Dl~  451 (712)
T KOG0283|consen  401 --ECLKVFS-HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKK-------------VVDWN-------------DLR  451 (712)
T ss_pred             --ceeeEEe-cCCeeEEEEecccCCCcEeecccccceEEeecCcCe-------------eEeeh-------------hhh
Confidence              5677776 999999999999999999999999999999997754             22332             123


Q ss_pred             cceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCC-CCEE
Q 004468          216 LSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPN-GEEV  294 (751)
Q Consensus       216 ~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspd-g~~L  294 (751)
                      .-|++++|.|+ |.+.++|+.+|.+++|+.+..+.....+......+           ...|.  .||.+.|.|. -..|
T Consensus       452 ~lITAvcy~Pd-Gk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~K-----------k~~~~--rITG~Q~~p~~~~~v  517 (712)
T KOG0283|consen  452 DLITAVCYSPD-GKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKK-----------KKQGK--RITGLQFFPGDPDEV  517 (712)
T ss_pred             hhheeEEeccC-CceEEEEEeccEEEEEEccCCeEEEeeeEeeccCc-----------cccCc--eeeeeEecCCCCCeE
Confidence            57999999995 89999999999999999998765443322111110           01111  5999999984 4479


Q ss_pred             EEEeCCCcEEEEECCC
Q 004468          295 LLSYSGEHVYLMDVNH  310 (751)
Q Consensus       295 l~~s~d~~I~lwdl~~  310 (751)
                      ++.+.|..|+|||+++
T Consensus       518 LVTSnDSrIRI~d~~~  533 (712)
T KOG0283|consen  518 LVTSNDSRIRIYDGRD  533 (712)
T ss_pred             EEecCCCceEEEeccc
Confidence            9999999999999766

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=99.98  E-value=1.9e-31  Score=288.59  Aligned_cols=210  Identities=22%  Similarity=0.345  Sum_probs=190.7

Q ss_pred             cccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEE
Q 004468           41 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR  120 (751)
Q Consensus        41 ~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~  120 (751)
                      ...++|.||.|+|..+.|+|+.++|+|+|.|++|++|.+.+..++..+ .||..+|++|.|+|.  |-+|||||.|++.+
T Consensus       442 ~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y-~GH~~PVwdV~F~P~--GyYFatas~D~tAr  518 (707)
T KOG0263|consen  442 GTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIY-KGHLAPVWDVQFAPR--GYYFATASHDQTAR  518 (707)
T ss_pred             ceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEe-cCCCcceeeEEecCC--ceEEEecCCCceee
Confidence            345679999999999999999999999999999999999999999888 799999999999999  89999999999999


Q ss_pred             EEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEec
Q 004468          121 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDL  200 (751)
Q Consensus       121 vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~  200 (751)
                      +|.....          .|++.+.+|-.-|.|+.|+| +..++++||.|.+||+||+.++..                  
T Consensus       519 LWs~d~~----------~PlRifaghlsDV~cv~FHP-Ns~Y~aTGSsD~tVRlWDv~~G~~------------------  569 (707)
T KOG0263|consen  519 LWSTDHN----------KPLRIFAGHLSDVDCVSFHP-NSNYVATGSSDRTVRLWDVSTGNS------------------  569 (707)
T ss_pred             eeecccC----------CchhhhcccccccceEEECC-cccccccCCCCceEEEEEcCCCcE------------------
Confidence            9999874          78999999999999999999 889999999999999999999863                  


Q ss_pred             ccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCcccc
Q 004468          201 RCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSL  280 (751)
Q Consensus       201 ~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  280 (751)
                             +..+.+|..+|.+++|+| ++++|++|+.|+.|++||+.+++.+..+                    .+|.+ 
T Consensus       570 -------VRiF~GH~~~V~al~~Sp-~Gr~LaSg~ed~~I~iWDl~~~~~v~~l--------------------~~Ht~-  620 (707)
T KOG0263|consen  570 -------VRIFTGHKGPVTALAFSP-CGRYLASGDEDGLIKIWDLANGSLVKQL--------------------KGHTG-  620 (707)
T ss_pred             -------EEEecCCCCceEEEEEcC-CCceEeecccCCcEEEEEcCCCcchhhh--------------------hcccC-
Confidence                   222345889999999999 5899999999999999999988765443                    45644 


Q ss_pred             ceEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 004468          281 HLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (751)
Q Consensus       281 ~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~  311 (751)
                      .|+++.||.||..|++++.|++|++||+...
T Consensus       621 ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~  651 (707)
T KOG0263|consen  621 TIYSLSFSRDGNVLASGGADNSVRLWDLTKV  651 (707)
T ss_pred             ceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence            6999999999999999999999999999874

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.97  E-value=2.3e-29  Score=261.11  Aligned_cols=207  Identities=27%  Similarity=0.420  Sum_probs=173.0

Q ss_pred             cEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEE
Q 004468           43 ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLF  122 (751)
Q Consensus        43 ~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vw  122 (751)
                      .++|++|.+.|++++|+|++++|++++.||.|++|++.++.....+ ..|...+..+.|+|+  +++|++++.|+.|++|
T Consensus         2 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~-~~~~~~i~~~~~~~~--~~~l~~~~~~~~i~i~   78 (289)
T cd00200           2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTL-KGHTGPVRDVAASAD--GTYLASGSSDKTIRLW   78 (289)
T ss_pred             chHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEE-ecCCcceeEEEECCC--CCEEEEEcCCCeEEEE
Confidence            4567899999999999999999999999999999999988877777 789999999999999  6899999999999999


Q ss_pred             ECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEeccc
Q 004468          123 NLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRC  202 (751)
Q Consensus       123 d~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~  202 (751)
                      |+...          +.+..+..|...|.++.|++ ++.++++++.||.|++||+++.+..                   
T Consensus        79 ~~~~~----------~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~-------------------  128 (289)
T cd00200          79 DLETG----------ECVRTLTGHTSYVSSVAFSP-DGRILSSSSRDKTIKVWDVETGKCL-------------------  128 (289)
T ss_pred             EcCcc----------cceEEEeccCCcEEEEEEcC-CCCEEEEecCCCeEEEEECCCcEEE-------------------
Confidence            99863          34677788999999999999 4678888888999999999865421                   


Q ss_pred             CceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccce
Q 004468          203 GAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHL  282 (751)
Q Consensus       203 ~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v  282 (751)
                            .....+...+.+++|+|+ +.++++++.|+.|++||++..+....+                    ..|.. .+
T Consensus       129 ------~~~~~~~~~i~~~~~~~~-~~~l~~~~~~~~i~i~d~~~~~~~~~~--------------------~~~~~-~i  180 (289)
T cd00200         129 ------TTLRGHTDWVNSVAFSPD-GTFVASSSQDGTIKLWDLRTGKCVATL--------------------TGHTG-EV  180 (289)
T ss_pred             ------EEeccCCCcEEEEEEcCc-CCEEEEEcCCCcEEEEEccccccceeE--------------------ecCcc-cc
Confidence                  011125567999999995 678888888999999999865543222                    11222 58


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004468          283 THVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (751)
Q Consensus       283 t~v~fspdg~~Ll~~s~d~~I~lwdl~~  310 (751)
                      +++.|+|+++.|++++.++.|++||+..
T Consensus       181 ~~~~~~~~~~~l~~~~~~~~i~i~d~~~  208 (289)
T cd00200         181 NSVAFSPDGEKLLSSSSDGTIKLWDLST  208 (289)
T ss_pred             ceEEECCCcCEEEEecCCCcEEEEECCC
Confidence            9999999999999999999999999876

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=99.97  E-value=1.7e-30  Score=281.31  Aligned_cols=208  Identities=21%  Similarity=0.322  Sum_probs=177.5

Q ss_pred             cEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCe-------------------------------EEEEeccc
Q 004468           43 ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK-------------------------------LLHSIETG   91 (751)
Q Consensus        43 ~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~-------------------------------~~~~l~~~   91 (751)
                      ..++..-...|+|..|++|+++||.|-.|..|++|.+...+                               ...++ .|
T Consensus       371 ~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L-~G  449 (707)
T KOG0263|consen  371 MYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTL-YG  449 (707)
T ss_pred             EEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEe-ec
Confidence            34444445679999999999999999999999999876311                               11223 69


Q ss_pred             CCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCc
Q 004468           92 HSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGT  171 (751)
Q Consensus        92 h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~  171 (751)
                      |.++|+.+.|+|+  .++|++||.|++||+|.+.+.          .++..+++|..+|+.+.|+| -|.+|+|+|.|++
T Consensus       450 H~GPVyg~sFsPd--~rfLlScSED~svRLWsl~t~----------s~~V~y~GH~~PVwdV~F~P-~GyYFatas~D~t  516 (707)
T KOG0263|consen  450 HSGPVYGCSFSPD--RRFLLSCSEDSSVRLWSLDTW----------SCLVIYKGHLAPVWDVQFAP-RGYYFATASHDQT  516 (707)
T ss_pred             CCCceeeeeeccc--ccceeeccCCcceeeeecccc----------eeEEEecCCCcceeeEEecC-CceEEEecCCCce
Confidence            9999999999999  799999999999999999975          55788899999999999999 6799999999999


Q ss_pred             EEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCc
Q 004468          172 LRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPL  251 (751)
Q Consensus       172 I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~  251 (751)
                      .++|......+.                         ..+.+|...|.|+.|+|+ ..|+++|+.|.+||+||..++.  
T Consensus       517 ArLWs~d~~~Pl-------------------------RifaghlsDV~cv~FHPN-s~Y~aTGSsD~tVRlWDv~~G~--  568 (707)
T KOG0263|consen  517 ARLWSTDHNKPL-------------------------RIFAGHLSDVDCVSFHPN-SNYVATGSSDRTVRLWDVSTGN--  568 (707)
T ss_pred             eeeeecccCCch-------------------------hhhcccccccceEEECCc-ccccccCCCCceEEEEEcCCCc--
Confidence            999998775532                         333457889999999994 8999999999999999999875  


Q ss_pred             cccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 004468          252 TSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (751)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~  311 (751)
                                 +++.|       .||.. +|++++|||+|++|++|+.|+.|.|||+.++
T Consensus       569 -----------~VRiF-------~GH~~-~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~  609 (707)
T KOG0263|consen  569 -----------SVRIF-------TGHKG-PVTALAFSPCGRYLASGDEDGLIKIWDLANG  609 (707)
T ss_pred             -----------EEEEe-------cCCCC-ceEEEEEcCCCceEeecccCCcEEEEEcCCC
Confidence                       34555       56766 7999999999999999999999999998873

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.97  E-value=1.1e-30  Score=256.45  Aligned_cols=195  Identities=17%  Similarity=0.338  Sum_probs=162.5

Q ss_pred             CCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCC
Q 004468           49 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFS  128 (751)
Q Consensus        49 H~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~  128 (751)
                      ....|.|+++.  ...++||..|.+|+|||..+..++..+ .||++.|.|+.|.    .+.|+|||.|.+|+|||++++ 
T Consensus       196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L-~GHtGSVLCLqyd----~rviisGSSDsTvrvWDv~tg-  267 (499)
T KOG0281|consen  196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKIL-TGHTGSVLCLQYD----ERVIVSGSSDSTVRVWDVNTG-  267 (499)
T ss_pred             cCCceEEEEec--chhhhcccccCceEEeccccHHHHHhh-hcCCCcEEeeecc----ceEEEecCCCceEEEEeccCC-
Confidence            45789999985  457999999999999999998888888 8999999999997    469999999999999999976 


Q ss_pred             CCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecc
Q 004468          129 GRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSL  208 (751)
Q Consensus       129 ~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  208 (751)
                               +++.++-.|...|..+.|+.   .+++++|.|.+|.+||+..+...        .+..             
T Consensus       268 ---------e~l~tlihHceaVLhlrf~n---g~mvtcSkDrsiaVWdm~sps~i--------t~rr-------------  314 (499)
T KOG0281|consen  268 ---------EPLNTLIHHCEAVLHLRFSN---GYMVTCSKDRSIAVWDMASPTDI--------TLRR-------------  314 (499)
T ss_pred             ---------chhhHHhhhcceeEEEEEeC---CEEEEecCCceeEEEeccCchHH--------HHHH-------------
Confidence                     77999999999999999974   58889999999999999876421        1112             


Q ss_pred             cCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEc
Q 004468          209 ADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFS  288 (751)
Q Consensus       209 ~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fs  288 (751)
                       ...+|...|+.+.|+.   ++|++++.|.+|++|++.+...+..+                    .||.. .|.++.+ 
T Consensus       315 -VLvGHrAaVNvVdfd~---kyIVsASgDRTikvW~~st~efvRtl--------------------~gHkR-GIAClQY-  368 (499)
T KOG0281|consen  315 -VLVGHRAAVNVVDFDD---KYIVSASGDRTIKVWSTSTCEFVRTL--------------------NGHKR-GIACLQY-  368 (499)
T ss_pred             -HHhhhhhheeeecccc---ceEEEecCCceEEEEeccceeeehhh--------------------hcccc-cceehhc-
Confidence             2234788999999964   69999999999999999987644433                    45554 3655444 


Q ss_pred             CCCCEEEEEeCCCcEEEEECCCC
Q 004468          289 PNGEEVLLSYSGEHVYLMDVNHA  311 (751)
Q Consensus       289 pdg~~Ll~~s~d~~I~lwdl~~~  311 (751)
                       .|+++++|++|.+|+|||+..+
T Consensus       369 -r~rlvVSGSSDntIRlwdi~~G  390 (499)
T KOG0281|consen  369 -RDRLVVSGSSDNTIRLWDIECG  390 (499)
T ss_pred             -cCeEEEecCCCceEEEEecccc
Confidence             6889999999999999998874

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=6e-30  Score=268.37  Aligned_cols=213  Identities=15%  Similarity=0.325  Sum_probs=184.3

Q ss_pred             cccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCc
Q 004468           39 RLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAE  118 (751)
Q Consensus        39 ~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~  118 (751)
                      +++..++|..|+..|.++.|+|....++++-..|.|.|||.++...+..+ .-..-+|.+.+|.+.  -+.+++|+.|..
T Consensus         2 ~l~~krk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksf-eV~~~PvRa~kfiaR--knWiv~GsDD~~   78 (794)
T KOG0276|consen    2 KLDFKRKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSF-EVSEVPVRAAKFIAR--KNWIVTGSDDMQ   78 (794)
T ss_pred             cchhhhHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeee-eecccchhhheeeec--cceEEEecCCce
Confidence            34556677789999999999999999999999999999999999999998 567789999999998  689999999999


Q ss_pred             EEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEE
Q 004468          119 VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILL  198 (751)
Q Consensus       119 V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~  198 (751)
                      |+||+..+.          +.++.|..|.+.|++|+.+|+.+ +++|+|.|-+|++||....=.|               
T Consensus        79 IrVfnynt~----------ekV~~FeAH~DyIR~iavHPt~P-~vLtsSDDm~iKlW~we~~wa~---------------  132 (794)
T KOG0276|consen   79 IRVFNYNTG----------EKVKTFEAHSDYIRSIAVHPTLP-YVLTSSDDMTIKLWDWENEWAC---------------  132 (794)
T ss_pred             EEEEecccc----------eeeEEeeccccceeeeeecCCCC-eEEecCCccEEEEeeccCceee---------------
Confidence            999999975          66999999999999999999765 6669999999999999875433               


Q ss_pred             ecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCcc
Q 004468          199 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRS  278 (751)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  278 (751)
                               ...+.+|...|.+++|+|.|++.+++++-|++|+||.+....+..++                    .||.
T Consensus       133 ---------~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl--------------------~gHe  183 (794)
T KOG0276|consen  133 ---------EQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTL--------------------EGHE  183 (794)
T ss_pred             ---------eeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceee--------------------eccc
Confidence                     23345588899999999999999999999999999999865543332                    4565


Q ss_pred             ccceEEEEEcCCC--CEEEEEeCCCcEEEEECCC
Q 004468          279 SLHLTHVTFSPNG--EEVLLSYSGEHVYLMDVNH  310 (751)
Q Consensus       279 ~~~vt~v~fspdg--~~Ll~~s~d~~I~lwdl~~  310 (751)
                      . .|++|.|-+-|  .+|++|+.|..|+|||.++
T Consensus       184 k-GVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQt  216 (794)
T KOG0276|consen  184 K-GVNCVDYYTGGDKPYLISGADDLTIKVWDYQT  216 (794)
T ss_pred             c-CcceEEeccCCCcceEEecCCCceEEEeecch
Confidence            5 49999998855  6999999999999999777

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=99.97  E-value=7.1e-29  Score=234.28  Aligned_cols=230  Identities=15%  Similarity=0.262  Sum_probs=186.5

Q ss_pred             CcccccccccchhhhccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCe--EEEEecccCCcceEEEE
Q 004468           23 RPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK--LLHSIETGHSANVFCTK  100 (751)
Q Consensus        23 ~~~~~~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~--~~~~l~~~h~~~V~~v~  100 (751)
                      +..+++++++|..  .+..+.++++--.+.||.|...|+++.||+|+. ..|++||+.++.  ++.++ .+|+.+|.+|.
T Consensus        15 sA~YDhTIRfWqa--~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~-e~h~kNVtaVg   90 (311)
T KOG0315|consen   15 SAGYDHTIRFWQA--LTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATF-EGHTKNVTAVG   90 (311)
T ss_pred             eccCcceeeeeeh--hcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEE-eccCCceEEEE
Confidence            4578899999984  566799999988889999999999999999987 489999998765  57777 89999999999


Q ss_pred             EecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCC
Q 004468          101 FVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQG  180 (751)
Q Consensus       101 fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~  180 (751)
                      |.-+  |+.++|||.||+++|||++..          .+.+ ...|..+|+++..+| +..-|++|..+|.|++||++..
T Consensus        91 F~~d--grWMyTgseDgt~kIWdlR~~----------~~qR-~~~~~spVn~vvlhp-nQteLis~dqsg~irvWDl~~~  156 (311)
T KOG0315|consen   91 FQCD--GRWMYTGSEDGTVKIWDLRSL----------SCQR-NYQHNSPVNTVVLHP-NQTELISGDQSGNIRVWDLGEN  156 (311)
T ss_pred             Eeec--CeEEEecCCCceEEEEeccCc----------ccch-hccCCCCcceEEecC-CcceEEeecCCCcEEEEEccCC
Confidence            9999  899999999999999999964          2233 334789999999999 6667779999999999999987


Q ss_pred             CCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCC
Q 004468          181 SSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSP  260 (751)
Q Consensus       181 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~  260 (751)
                      .....                        ..|.....|.++.+.| ++.+++.+.+-|..++|++-.......       
T Consensus       157 ~c~~~------------------------liPe~~~~i~sl~v~~-dgsml~a~nnkG~cyvW~l~~~~~~s~-------  204 (311)
T KOG0315|consen  157 SCTHE------------------------LIPEDDTSIQSLTVMP-DGSMLAAANNKGNCYVWRLLNHQTASE-------  204 (311)
T ss_pred             ccccc------------------------cCCCCCcceeeEEEcC-CCcEEEEecCCccEEEEEccCCCcccc-------
Confidence            53211                        1223446899999999 589999999999999999876432222       


Q ss_pred             CCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004468          261 PPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (751)
Q Consensus       261 ~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~  310 (751)
                            +.|.+.. ..|.. .+..+.+|||+++|++++.|.+++||++++
T Consensus       205 ------l~P~~k~-~ah~~-~il~C~lSPd~k~lat~ssdktv~iwn~~~  246 (311)
T KOG0315|consen  205 ------LEPVHKF-QAHNG-HILRCLLSPDVKYLATCSSDKTVKIWNTDD  246 (311)
T ss_pred             ------ceEhhhe-ecccc-eEEEEEECCCCcEEEeecCCceEEEEecCC
Confidence                  1222221 23444 599999999999999999999999999877

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.97  E-value=6.1e-28  Score=258.50  Aligned_cols=248  Identities=19%  Similarity=0.295  Sum_probs=207.1

Q ss_pred             hccccccEEeccCCCcEEEEEECCCCCEEEEEeCC-CcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEEC
Q 004468           37 VRRLSQERELEGHQGCVNAISWNSKGSLLISGSDD-THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG  115 (751)
Q Consensus        37 i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~D-g~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~  115 (751)
                      +..+.++|.|.--...|..+.|+..|..||-|+.. |.+-||+..+...+... ++|...|++++++|+  |++||||+.
T Consensus       294 lP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQ-QgH~~~i~~l~YSpD--gq~iaTG~e  370 (893)
T KOG0291|consen  294 LPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQ-QGHSDRITSLAYSPD--GQLIATGAE  370 (893)
T ss_pred             cCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeec-cccccceeeEEECCC--CcEEEeccC
Confidence            45567788888777899999999999999998754 89999999988888777 899999999999999  899999999


Q ss_pred             CCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccce
Q 004468          116 DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRN  195 (751)
Q Consensus       116 Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~  195 (751)
                      ||.|+|||...+          -|+.+|..|+..|+.+.|+. .++.++|.+.||+||.||+......+...        
T Consensus       371 DgKVKvWn~~Sg----------fC~vTFteHts~Vt~v~f~~-~g~~llssSLDGtVRAwDlkRYrNfRTft--------  431 (893)
T KOG0291|consen  371 DGKVKVWNTQSG----------FCFVTFTEHTSGVTAVQFTA-RGNVLLSSSLDGTVRAWDLKRYRNFRTFT--------  431 (893)
T ss_pred             CCcEEEEeccCc----------eEEEEeccCCCceEEEEEEe-cCCEEEEeecCCeEEeeeecccceeeeec--------
Confidence            999999999964          56899999999999999998 77899999999999999998765321110        


Q ss_pred             EEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCC-eEEEEeCCCCCCccccCCCCCCCCcccccccccccc
Q 004468          196 ILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDA-FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSE  274 (751)
Q Consensus       196 ~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~-~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (751)
                                     . .......|++..|. +.++.+|+.|. .|.+|++.+++.+..+                    
T Consensus       432 ---------------~-P~p~QfscvavD~s-GelV~AG~~d~F~IfvWS~qTGqllDiL--------------------  474 (893)
T KOG0291|consen  432 ---------------S-PEPIQFSCVAVDPS-GELVCAGAQDSFEIFVWSVQTGQLLDIL--------------------  474 (893)
T ss_pred             ---------------C-CCceeeeEEEEcCC-CCEEEeeccceEEEEEEEeecCeeeehh--------------------
Confidence                           0 13356789999995 78888898887 5899999998865443                    


Q ss_pred             CCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcceeeeecCCCceeEEeCCCCCCcccCCCccc
Q 004468          275 HGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHD  344 (751)
Q Consensus       275 ~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~  344 (751)
                      .||.+ +|.+++|+|+|..|++++-|.+|++||+-......-.....+-...++|+|++..++.+..++.
T Consensus       475 sGHEg-PVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgq  543 (893)
T KOG0291|consen  475 SGHEG-PVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQ  543 (893)
T ss_pred             cCCCC-cceeeEEccccCeEEeccccceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEEEecce
Confidence            56766 7999999999999999999999999999886544445555667778999999988877655443

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=99.97  E-value=8e-29  Score=237.90  Aligned_cols=225  Identities=19%  Similarity=0.256  Sum_probs=186.0

Q ss_pred             ccccccccch---hhhccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEE
Q 004468           25 DVNHSLQMHS---SLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKF  101 (751)
Q Consensus        25 ~~~~~l~~~~---~~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~f  101 (751)
                      .-++.+-.|+   +......+++.|+||...|+.+..++||++.+|+|.|+++++||+.+++..+.| .||...|.+++|
T Consensus        35 srDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f-~GH~~dVlsva~  113 (315)
T KOG0279|consen   35 SRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRF-VGHTKDVLSVAF  113 (315)
T ss_pred             ccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEE-EecCCceEEEEe
Confidence            3344444443   345556779999999999999999999999999999999999999999988888 899999999999


Q ss_pred             ecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeeccc--CCceeEEEEecCC-CCEEEEEeCCCcEEEEecC
Q 004468          102 VPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCH--TRRVKKLAVEVGN-PHVVWSASEDGTLRQHDFR  178 (751)
Q Consensus       102 sp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h--~~~V~~l~~sp~~-~~~l~s~s~Dg~I~iwDlr  178 (751)
                      +|+  +..|+||+.|.+|++|++..           .+..++..+  ++.|.++.|+|.. ..+|+++|.|++|++||++
T Consensus       114 s~d--n~qivSGSrDkTiklwnt~g-----------~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~  180 (315)
T KOG0279|consen  114 STD--NRQIVSGSRDKTIKLWNTLG-----------VCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLR  180 (315)
T ss_pred             cCC--CceeecCCCcceeeeeeecc-----------cEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccC
Confidence            999  79999999999999999985           334555443  7899999999953 4689999999999999999


Q ss_pred             CCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCC
Q 004468          179 QGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRM  258 (751)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~  258 (751)
                      +.+.                         ...+++|...++.++++| |+.++++|+.||.+.+||++..+.+.++.   
T Consensus       181 ~~~l-------------------------~~~~~gh~~~v~t~~vSp-DGslcasGgkdg~~~LwdL~~~k~lysl~---  231 (315)
T KOG0279|consen  181 NCQL-------------------------RTTFIGHSGYVNTVTVSP-DGSLCASGGKDGEAMLWDLNEGKNLYSLE---  231 (315)
T ss_pred             Ccch-------------------------hhccccccccEEEEEECC-CCCEEecCCCCceEEEEEccCCceeEecc---
Confidence            8762                         233456888999999999 58999999999999999999876543321   


Q ss_pred             CCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCC
Q 004468          259 SPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG  312 (751)
Q Consensus       259 ~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~  312 (751)
                                        +.. .|.+++|+|+.-.|+.+. +..|+|||+.++.
T Consensus       232 ------------------a~~-~v~sl~fspnrywL~~at-~~sIkIwdl~~~~  265 (315)
T KOG0279|consen  232 ------------------AFD-IVNSLCFSPNRYWLCAAT-ATSIKIWDLESKA  265 (315)
T ss_pred             ------------------CCC-eEeeEEecCCceeEeecc-CCceEEEeccchh
Confidence                              222 599999999976666554 4569999999854

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.97  E-value=8e-29  Score=265.11  Aligned_cols=448  Identities=19%  Similarity=0.259  Sum_probs=315.8

Q ss_pred             ccccccchhhhccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCC
Q 004468           27 NHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETS  106 (751)
Q Consensus        27 ~~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~  106 (751)
                      +..+++|+..-.  ...-++.||+..|+++.|...|.+|||||.|+.|+|||+-...-+..+ .||+..|+..-|...  
T Consensus        86 DGsVqif~~~s~--~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL-~GHkd~iT~~~F~~~--  160 (888)
T KOG0306|consen   86 DGSVQIFSLESE--EILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRL-RGHKDSITQALFLNG--  160 (888)
T ss_pred             CceEEeeccCCC--ceeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEEe-ecchHHHhHHhccCC--
Confidence            567788776544  677889999999999999999999999999999999999877777778 899999999999986  


Q ss_pred             CcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCC-----
Q 004468          107 DELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGS-----  181 (751)
Q Consensus       107 ~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~-----  181 (751)
                      +++|++++.|+.|++||+.+.          .+..+...|.+.|+.+++.+   +.+++++.|+.+++|++....     
T Consensus       161 ~~~lvS~sKDs~iK~WdL~tq----------hCf~Thvd~r~Eiw~l~~~~---~~lvt~~~dse~~v~~L~~~~D~~~~  227 (888)
T KOG0306|consen  161 DSFLVSVSKDSMIKFWDLETQ----------HCFETHVDHRGEIWALVLDE---KLLVTAGTDSELKVWELAFEDDEKET  227 (888)
T ss_pred             CeEEEEeccCceEEEEecccc----------eeeeEEecccceEEEEEEec---ceEEEEecCCceEEEEeecccccccc
Confidence            689999999999999999975          56788889999999999976   688899999999999992110     


Q ss_pred             -------------------CC-------------C------------------------------CCCC-----------
Q 004468          182 -------------------SC-------------P------------------------------PAGS-----------  188 (751)
Q Consensus       182 -------------------~~-------------~------------------------------~~~~-----------  188 (751)
                                         ..             .                              ....           
T Consensus       228 ~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl  307 (888)
T KOG0306|consen  228 NRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSL  307 (888)
T ss_pred             cccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhH
Confidence                               00             0                              0000           


Q ss_pred             ----------------------CCCccceEEEecccCce-----------------ecccCCCCCccceEEEEEeCCCCc
Q 004468          189 ----------------------SHQECRNILLDLRCGAK-----------------RSLADPPKQTLSLKSCDISSTRPH  229 (751)
Q Consensus       189 ----------------------~~~~~~~~l~~~~~~~~-----------------~~~~~~~~~~~~v~~i~~sp~~~~  229 (751)
                                            ......+.++.+.....                 ..-....+|...|.+++++.+ . 
T Consensus       308 ~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d-~-  385 (888)
T KOG0306|consen  308 SDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSD-S-  385 (888)
T ss_pred             HHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecC-c-
Confidence                                  00000001111111000                 000223568888999999984 3 


Q ss_pred             EEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 004468          230 LLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVN  309 (751)
Q Consensus       230 ~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~  309 (751)
                      .++..+..+.|+||++.+.+.+.++.                      .. .+.+..|-|.++++++|+..|.+.+||+.
T Consensus       386 ~~~~Sga~~SikiWn~~t~kciRTi~----------------------~~-y~l~~~Fvpgd~~Iv~G~k~Gel~vfdla  442 (888)
T KOG0306|consen  386 ILLASGAGESIKIWNRDTLKCIRTIT----------------------CG-YILASKFVPGDRYIVLGTKNGELQVFDLA  442 (888)
T ss_pred             eeeeecCCCcEEEEEccCcceeEEec----------------------cc-cEEEEEecCCCceEEEeccCCceEEEEee
Confidence            44444556789999999887554431                      11 37889999999999999999999999999


Q ss_pred             CCCcceeeeecCCCceeEEeCCCCCCcccCCCcccccccccccccccccCcchhHHHHHHHHHhhhcCCChhHHHHHhHH
Q 004468          310 HAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVRGEVATGLGKCRMLVEIARNSLEEGKHPYYGIEACNE  389 (751)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~ai~~~~~  389 (751)
                      ..........|.+.+..++.+|+..+......+...-...+.+...+.....++..+.+        .    ..++.-++
T Consensus       443 S~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~--------~----rtLel~dd  510 (888)
T KOG0306|consen  443 SASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKH--------T----RTLELEDD  510 (888)
T ss_pred             hhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeecc--------c----eEEecccc
Confidence            98777777788899999999999998877665544332222221000000000000000        0    00000000


Q ss_pred             HHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcchHHHHHHHHHHhcchHHHHHHHHHhcc
Q 004468          390 VLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQC  469 (751)
Q Consensus       390 ~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~a~~~~~~~l~~l~~~~~a~~~~~~~~~  469 (751)
                      ++                                                                              
T Consensus       511 vL------------------------------------------------------------------------------  512 (888)
T KOG0306|consen  511 VL------------------------------------------------------------------------------  512 (888)
T ss_pred             EE------------------------------------------------------------------------------
Confidence            00                                                                              


Q ss_pred             cCCCChhhhHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCcccc--ccc-h--hcccccCCCCCCCCCCCCCCCCchh
Q 004468          470 LDPSNSVMAEKVENIKKHIAAAETEKNNKANDGGARSEPRTGRVLS--LSD-I--IYRSEANSDASQDGPRSEREDSDYD  544 (751)
Q Consensus       470 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~  544 (751)
                                          .              ..-+.+++++.  |.| .  +|                       
T Consensus       513 --------------------~--------------v~~Spdgk~LaVsLLdnTVkVy-----------------------  535 (888)
T KOG0306|consen  513 --------------------C--------------VSVSPDGKLLAVSLLDNTVKVY-----------------------  535 (888)
T ss_pred             --------------------E--------------EEEcCCCcEEEEEeccCeEEEE-----------------------
Confidence                                0              00111122221  111 0  22                       


Q ss_pred             hhhhhcccCCCCCCCCCccccccccCccceeecccCCCccccccCCCCCCCCCCCCCCCCCCCCccccccccceeecccc
Q 004468          545 EEVEVDFHTSVPGDEGRDVEANFLHGSLNVRIHRRGDSARETVDANGSSGSPSSSSQNDRIPYQPETVIDMKQRYVGHCN  624 (751)
Q Consensus       545 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~  624 (751)
                      +=+.++|+.+.+|           |.++...|+-.+|+           ....++|.....++|..+-+++.+.|-+|..
T Consensus       536 flDtlKFflsLYG-----------HkLPV~smDIS~DS-----------klivTgSADKnVKiWGLdFGDCHKS~fAHdD  593 (888)
T KOG0306|consen  536 FLDTLKFFLSLYG-----------HKLPVLSMDISPDS-----------KLIVTGSADKNVKIWGLDFGDCHKSFFAHDD  593 (888)
T ss_pred             Eecceeeeeeecc-----------cccceeEEeccCCc-----------CeEEeccCCCceEEeccccchhhhhhhcccC
Confidence            2245678888887           67788888888874           2223346788899999999999999999999


Q ss_pred             cceeeeEeeeccCCCCEEEEccCCCcEEEEecCC------------eeeeeeccCCCceEEEEecCCceEEecCCCCC
Q 004468          625 VGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQT------------VVNCVQCHPFDCVVATSGIDNTIKIWTPSASV  690 (751)
Q Consensus       625 ~~~~i~~~~~~~~~~~~v~sgs~dg~~~iW~~~~------------~v~~v~~~p~~~~las~~~d~~v~~W~~~~~~  690 (751)
                      ++..++    |-|+..+..|.+.||.|+-||-..            .|+|++..|+|.+++|||.|++||+|....+.
T Consensus       594 Svm~V~----F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~tde~  667 (888)
T KOG0306|consen  594 SVMSVQ----FLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTDEI  667 (888)
T ss_pred             ceeEEE----EcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeeeccCcc
Confidence            877554    588999999999999999998665            89999999999999999999999999987643

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=99.97  E-value=1.8e-28  Score=236.73  Aligned_cols=250  Identities=17%  Similarity=0.295  Sum_probs=211.2

Q ss_pred             cccccccchhhhccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCC------eEEEEecccCCcceEEE
Q 004468           26 VNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSR------KLLHSIETGHSANVFCT   99 (751)
Q Consensus        26 ~~~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~------~~~~~l~~~h~~~V~~v   99 (751)
                      -+.+|-+|+.+...  .++-+.--..-|..++|+|.|+++|.|+-|....||++.+.      .....+ .+|++.+.|+
T Consensus        75 qDGklIvWDs~Ttn--K~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l-~gHtgylScC  151 (343)
T KOG0286|consen   75 QDGKLIVWDSFTTN--KVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSREL-AGHTGYLSCC  151 (343)
T ss_pred             cCCeEEEEEccccc--ceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeee-cCccceeEEE
Confidence            45667777766544  44555556778999999999999999999999999999854      233445 8999999999


Q ss_pred             EEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCC
Q 004468          100 KFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQ  179 (751)
Q Consensus       100 ~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~  179 (751)
                      .|.++   ..|+|+|.|.++.+||++++          +.+..|.+|.+-|.+++++|.+++.|+||+-|++.++||+|.
T Consensus       152 ~f~dD---~~ilT~SGD~TCalWDie~g----------~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~  218 (343)
T KOG0286|consen  152 RFLDD---NHILTGSGDMTCALWDIETG----------QQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRS  218 (343)
T ss_pred             EEcCC---CceEecCCCceEEEEEcccc----------eEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccC
Confidence            99987   68999999999999999976          558899999999999999998889999999999999999999


Q ss_pred             CCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCC
Q 004468          180 GSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMS  259 (751)
Q Consensus       180 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~  259 (751)
                      +..                         +..+++|...|+++.|.|+ +.-|++|+.|+++|+||+|....+..++..  
T Consensus       219 ~~c-------------------------~qtF~ghesDINsv~ffP~-G~afatGSDD~tcRlyDlRaD~~~a~ys~~--  270 (343)
T KOG0286|consen  219 GQC-------------------------VQTFEGHESDINSVRFFPS-GDAFATGSDDATCRLYDLRADQELAVYSHD--  270 (343)
T ss_pred             cce-------------------------eEeecccccccceEEEccC-CCeeeecCCCceeEEEeecCCcEEeeeccC--
Confidence            863                         3445668999999999995 899999999999999999987655443211  


Q ss_pred             CCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcceeeeecCCCceeEEeCCCCCCc
Q 004468          260 PPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGL  336 (751)
Q Consensus       260 ~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp~~~~~  336 (751)
                                       ....+|++|+||..|++|++|+.|..+.+||.-.+.....+.+|...+..+..+|+.-.+
T Consensus       271 -----------------~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av  330 (343)
T KOG0286|consen  271 -----------------SIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAV  330 (343)
T ss_pred             -----------------cccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEE
Confidence                             112369999999999999999999999999999988888888888888889999876544

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=99.97  E-value=2.1e-28  Score=249.89  Aligned_cols=226  Identities=16%  Similarity=0.230  Sum_probs=173.5

Q ss_pred             EEeccCCCcEEEEEECCCCC-EEEEEeCCCcEEEEeCCC--CeEEE--Ee----c-----ccCCcceEEEEEecCCCCcE
Q 004468           44 RELEGHQGCVNAISWNSKGS-LLISGSDDTHINVWSYSS--RKLLH--SI----E-----TGHSANVFCTKFVPETSDEL  109 (751)
Q Consensus        44 ~~L~gH~~~V~~l~~s~dg~-~LaSgs~Dg~I~IWd~~~--~~~~~--~l----~-----~~h~~~V~~v~fsp~s~~~~  109 (751)
                      +.+. |+.+|.+.+|+|-.. +||+|+.|-+.++|++..  .....  .+    .     ......|++++|+.+  |.+
T Consensus       173 kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~--G~~  249 (524)
T KOG0273|consen  173 KVLR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNND--GTL  249 (524)
T ss_pred             eecc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCC--CCe
Confidence            3445 999999999999766 999999999999999864  11111  11    0     112367999999998  899


Q ss_pred             EEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCC
Q 004468          110 VVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSS  189 (751)
Q Consensus       110 l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~  189 (751)
                      ||+|+.||.+++|+...           ..+.++..|+++|.++.|+. .+++|++++-||++.+||..+++..+     
T Consensus       250 LatG~~~G~~riw~~~G-----------~l~~tl~~HkgPI~slKWnk-~G~yilS~~vD~ttilwd~~~g~~~q-----  312 (524)
T KOG0273|consen  250 LATGSEDGEARIWNKDG-----------NLISTLGQHKGPIFSLKWNK-KGTYILSGGVDGTTILWDAHTGTVKQ-----  312 (524)
T ss_pred             EEEeecCcEEEEEecCc-----------hhhhhhhccCCceEEEEEcC-CCCEEEeccCCccEEEEeccCceEEE-----
Confidence            99999999999999984           55889999999999999998 67899999999999999998775321     


Q ss_pred             CCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccc
Q 004468          190 HQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCP  269 (751)
Q Consensus       190 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~  269 (751)
                             .+.             -|..+.-.+.|-.  ..-+++++.|+.|+||.+....|+.++               
T Consensus       313 -------~f~-------------~~s~~~lDVdW~~--~~~F~ts~td~~i~V~kv~~~~P~~t~---------------  355 (524)
T KOG0273|consen  313 -------QFE-------------FHSAPALDVDWQS--NDEFATSSTDGCIHVCKVGEDRPVKTF---------------  355 (524)
T ss_pred             -------eee-------------eccCCccceEEec--CceEeecCCCceEEEEEecCCCcceee---------------
Confidence                   111             1233334566664  468999999999999998766554433               


Q ss_pred             cccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcceeeeecCCCceeEEeCCC
Q 004468          270 MHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPT  332 (751)
Q Consensus       270 ~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp~  332 (751)
                           .||.+ .|..+.|+|.|..|++++.|++++||++........+..+...+....|+|.
T Consensus       356 -----~GH~g-~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~  412 (524)
T KOG0273|consen  356 -----IGHHG-EVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPT  412 (524)
T ss_pred             -----ecccC-ceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCC
Confidence                 45655 6999999999999999999999999998886544444444444555555554

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.96  E-value=1.8e-29  Score=253.85  Aligned_cols=204  Identities=21%  Similarity=0.306  Sum_probs=168.3

Q ss_pred             ccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCe--EEEEecccCCcceEEEEEecCCCCcEEEEEECCCcE
Q 004468           42 QERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK--LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEV  119 (751)
Q Consensus        42 ~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~--~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V  119 (751)
                      ....|..|.+.|+.+.|-++...|++|+.|..|++|++..++  .+.++ .|..++|++++|-++  +..+++++.|+.+
T Consensus       167 ~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tL-aGs~g~it~~d~d~~--~~~~iAas~d~~~  243 (459)
T KOG0288|consen  167 ALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTL-AGSLGNITSIDFDSD--NKHVIAASNDKNL  243 (459)
T ss_pred             hhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhh-hccCCCcceeeecCC--CceEEeecCCCce
Confidence            345678899999999999999999999999999999988666  55566 788899999999999  7999999999999


Q ss_pred             EEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEe
Q 004468          120 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD  199 (751)
Q Consensus       120 ~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~  199 (751)
                      ++|++...          ....++.+|++.|+++.|.... ..+++|+.|.+|+.||+....+.....            
T Consensus       244 r~Wnvd~~----------r~~~TLsGHtdkVt~ak~~~~~-~~vVsgs~DRtiK~WDl~k~~C~kt~l------------  300 (459)
T KOG0288|consen  244 RLWNVDSL----------RLRHTLSGHTDKVTAAKFKLSH-SRVVSGSADRTIKLWDLQKAYCSKTVL------------  300 (459)
T ss_pred             eeeeccch----------hhhhhhcccccceeeehhhccc-cceeeccccchhhhhhhhhhheecccc------------
Confidence            99999964          5688999999999999998743 348899999999999999865331111            


Q ss_pred             cccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccc
Q 004468          200 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS  279 (751)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  279 (751)
                                    ....+..|..+   ...+++|..|+.||+||+|...+..+.+                      .+
T Consensus       301 --------------~~S~cnDI~~~---~~~~~SgH~DkkvRfwD~Rs~~~~~sv~----------------------~g  341 (459)
T KOG0288|consen  301 --------------PGSQCNDIVCS---ISDVISGHFDKKVRFWDIRSADKTRSVP----------------------LG  341 (459)
T ss_pred             --------------ccccccceEec---ceeeeecccccceEEEeccCCceeeEee----------------------cC
Confidence                          11234445554   3578999999999999999876554331                      11


Q ss_pred             cceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004468          280 LHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (751)
Q Consensus       280 ~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~  310 (751)
                      +.|+++..+++|..|++++.|.++.++|+.+
T Consensus       342 g~vtSl~ls~~g~~lLsssRDdtl~viDlRt  372 (459)
T KOG0288|consen  342 GRVTSLDLSMDGLELLSSSRDDTLKVIDLRT  372 (459)
T ss_pred             cceeeEeeccCCeEEeeecCCCceeeeeccc
Confidence            2599999999999999999999999999988

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.96  E-value=9.8e-27  Score=240.44  Aligned_cols=249  Identities=14%  Similarity=0.198  Sum_probs=175.1

Q ss_pred             hccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCC-eEEEEecccCCcceEEEEEecCCCCcEEEEEEC
Q 004468           37 VRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSR-KLLHSIETGHSANVFCTKFVPETSDELVVSGAG  115 (751)
Q Consensus        37 i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~-~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~  115 (751)
                      +........+.+|...|+-..|+|.|.++|||...|+|+|||.... ..++.-.+.-.++|..++|.++  ++.|+..+.
T Consensus        46 i~~~~~~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~d--s~RI~avGE  123 (603)
T KOG0318|consen   46 IDNPASVDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFD--SKRIAAVGE  123 (603)
T ss_pred             CCCccceeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCC--CcEEEEEec
Confidence            4555667788999999999999999999999999999999997652 2222211444556666666666  333333221


Q ss_pred             --C--CcEEEEECCCCCCCCC-------------------------------CCCCCCCceeecccCCceeEEEEecCCC
Q 004468          116 --D--AEVRLFNLSRFSGRGL-------------------------------DDNAITPSALYQCHTRRVKKLAVEVGNP  160 (751)
Q Consensus       116 --D--g~V~vwd~~~~~~~~~-------------------------------~~~~~~~~~~~~~h~~~V~~l~~sp~~~  160 (751)
                        +  |.+.+||-.+..+...                               ..+.++-..++..|...|+++.|+| ++
T Consensus       124 Grerfg~~F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysP-DG  202 (603)
T KOG0318|consen  124 GRERFGHVFLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSP-DG  202 (603)
T ss_pred             CccceeEEEEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECC-CC
Confidence              1  2344454443222110                               0111244556678999999999999 67


Q ss_pred             CEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeE
Q 004468          161 HVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFA  240 (751)
Q Consensus       161 ~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~I  240 (751)
                      .+|+|++.||+|.+||-.+++..                      ..+.....|...|.+++|+| |+..+++++.|.++
T Consensus       203 ~~Fat~gsDgki~iyDGktge~v----------------------g~l~~~~aHkGsIfalsWsP-Ds~~~~T~SaDkt~  259 (603)
T KOG0318|consen  203 SRFATAGSDGKIYIYDGKTGEKV----------------------GELEDSDAHKGSIFALSWSP-DSTQFLTVSADKTI  259 (603)
T ss_pred             CeEEEecCCccEEEEcCCCccEE----------------------EEecCCCCccccEEEEEECC-CCceEEEecCCceE
Confidence            99999999999999998887632                      11233456899999999999 58999999999999


Q ss_pred             EEEeCCCCCCccccCCCCC-------------------CCCccccccccccc----cCCccccceEEEEEcCCCCEEEEE
Q 004468          241 RLYDRRMLPPLTSCQKRMS-------------------PPPCVNYFCPMHLS----EHGRSSLHLTHVTFSPNGEEVLLS  297 (751)
Q Consensus       241 riwD~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~----~~g~~~~~vt~v~fspdg~~Ll~~  297 (751)
                      ||||..+.+.+.++.....                   ....+.++.+.+..    ..||.. .|++++.+||+++|+++
T Consensus       260 KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK-~ITaLtv~~d~~~i~Sg  338 (603)
T KOG0318|consen  260 KIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNK-SITALTVSPDGKTIYSG  338 (603)
T ss_pred             EEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheeccccc-ceeEEEEcCCCCEEEee
Confidence            9999998876655433221                   01112222222211    146665 69999999999999999


Q ss_pred             eCCCcEEEEECCCCC
Q 004468          298 YSGEHVYLMDVNHAG  312 (751)
Q Consensus       298 s~d~~I~lwdl~~~~  312 (751)
                      +.||.|.-||+.++.
T Consensus       339 syDG~I~~W~~~~g~  353 (603)
T KOG0318|consen  339 SYDGHINSWDSGSGT  353 (603)
T ss_pred             ccCceEEEEecCCcc
Confidence            999999999999864

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.96  E-value=3.2e-28  Score=236.04  Aligned_cols=216  Identities=21%  Similarity=0.340  Sum_probs=177.1

Q ss_pred             cEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCC------------------CeEEEEecccCCcceEEEEEecC
Q 004468           43 ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSS------------------RKLLHSIETGHSANVFCTKFVPE  104 (751)
Q Consensus        43 ~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~------------------~~~~~~l~~~h~~~V~~v~fsp~  104 (751)
                      ...|..|++.+.+-+|++||.++|+||.|..|+|.|++.                  .-.+.++ -.|...|+++.|+|.
T Consensus       105 t~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTl-YDH~devn~l~FHPr  183 (430)
T KOG0640|consen  105 TKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTL-YDHVDEVNDLDFHPR  183 (430)
T ss_pred             eEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeeh-hhccCcccceeecch
Confidence            356788999999999999999999999999999999862                  1245566 689999999999999


Q ss_pred             CCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCC
Q 004468          105 TSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCP  184 (751)
Q Consensus       105 s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~  184 (751)
                        ..+|++|+.|++|++||+.....+       +..++++ ...+|.+|.|+| .|.+|+.|..-.++++||+.+-++..
T Consensus       184 --e~ILiS~srD~tvKlFDfsK~saK-------rA~K~~q-d~~~vrsiSfHP-sGefllvgTdHp~~rlYdv~T~Qcfv  252 (430)
T KOG0640|consen  184 --ETILISGSRDNTVKLFDFSKTSAK-------RAFKVFQ-DTEPVRSISFHP-SGEFLLVGTDHPTLRLYDVNTYQCFV  252 (430)
T ss_pred             --hheEEeccCCCeEEEEecccHHHH-------HHHHHhh-ccceeeeEeecC-CCceEEEecCCCceeEEeccceeEee
Confidence              799999999999999999864332       1233333 567899999999 77899999999999999999876321


Q ss_pred             CCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCcc
Q 004468          185 PAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCV  264 (751)
Q Consensus       185 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~  264 (751)
                      .                      ......|...|+++.+++. +++.++|+.||.|+|||--+.+             |+
T Consensus       253 s----------------------anPd~qht~ai~~V~Ys~t-~~lYvTaSkDG~IklwDGVS~r-------------Cv  296 (430)
T KOG0640|consen  253 S----------------------ANPDDQHTGAITQVRYSST-GSLYVTASKDGAIKLWDGVSNR-------------CV  296 (430)
T ss_pred             e----------------------cCcccccccceeEEEecCC-ccEEEEeccCCcEEeeccccHH-------------HH
Confidence            1                      0112347889999999995 8999999999999999976654             56


Q ss_pred             ccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCC
Q 004468          265 NYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG  312 (751)
Q Consensus       265 ~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~  312 (751)
                      ..+...      |.+..|++..|..+|+||++++.|..|+||.+.++.
T Consensus       297 ~t~~~A------H~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R  338 (430)
T KOG0640|consen  297 RTIGNA------HGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGR  338 (430)
T ss_pred             HHHHhh------cCCceeeeEEEccCCeEEeecCCcceeeeeeecCCc
Confidence            655433      444479999999999999999999999999999954

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.96  E-value=4e-29  Score=267.55  Aligned_cols=207  Identities=20%  Similarity=0.268  Sum_probs=173.9

Q ss_pred             cCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCC
Q 004468           48 GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRF  127 (751)
Q Consensus        48 gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~  127 (751)
                      .-...+++++..||+++|++++..+.+++|++.+++.+...+..|+++|.-++|.|.  +.++++|+.|+.|+|||+..+
T Consensus        60 ed~d~ita~~l~~d~~~L~~a~rs~llrv~~L~tgk~irswKa~He~Pvi~ma~~~~--g~LlAtggaD~~v~VWdi~~~  137 (775)
T KOG0319|consen   60 EDEDEITALALTPDEEVLVTASRSQLLRVWSLPTGKLIRSWKAIHEAPVITMAFDPT--GTLLATGGADGRVKVWDIKNG  137 (775)
T ss_pred             cchhhhheeeecCCccEEEEeeccceEEEEEcccchHhHhHhhccCCCeEEEEEcCC--CceEEeccccceEEEEEeeCC
Confidence            345679999999999999999999999999999999999886569999999999999  789999999999999999965


Q ss_pred             CCCCCCCCCCCCceeecccCCceeEEEEecCCC-CEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCcee
Q 004468          128 SGRGLDDNAITPSALYQCHTRRVKKLAVEVGNP-HVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKR  206 (751)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~-~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~  206 (751)
                                .+.+.|++|.+.|.++.|+|+-. .+|++|+.|+++++||++....|                       
T Consensus       138 ----------~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tc-----------------------  184 (775)
T KOG0319|consen  138 ----------YCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTC-----------------------  184 (775)
T ss_pred             ----------EEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCchH-----------------------
Confidence                      55899999999999999998432 36889999999999999976533                       


Q ss_pred             cccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEE
Q 004468          207 SLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVT  286 (751)
Q Consensus       207 ~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~  286 (751)
                       +.....|...|++++|.++ +..+++++.|..|.|||+...+....++.                      ...+-++.
T Consensus       185 -l~~~~~H~S~vtsL~~~~d-~~~~ls~~RDkvi~vwd~~~~~~l~~lp~----------------------ye~~E~vv  240 (775)
T KOG0319|consen  185 -LHTMILHKSAVTSLAFSED-SLELLSVGRDKVIIVWDLVQYKKLKTLPL----------------------YESLESVV  240 (775)
T ss_pred             -HHHHHhhhhheeeeeeccC-CceEEEeccCcEEEEeehhhhhhhheech----------------------hhheeeEE
Confidence             3334458889999999995 89999999999999999965443322210                      01366677


Q ss_pred             EcCC-----CCEEEEEeCCCcEEEEECCCCCc
Q 004468          287 FSPN-----GEEVLLSYSGEHVYLMDVNHAGG  313 (751)
Q Consensus       287 fspd-----g~~Ll~~s~d~~I~lwdl~~~~~  313 (751)
                      +-++     |.++++.+.+|.+++||..++..
T Consensus       241 ~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~  272 (775)
T KOG0319|consen  241 RLREELGGKGEYIITAGGSGVVQYWDSESGKC  272 (775)
T ss_pred             EechhcCCcceEEEEecCCceEEEEecccchh
Confidence            7776     77999999999999999998653

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.96  E-value=2.1e-28  Score=238.19  Aligned_cols=205  Identities=23%  Similarity=0.459  Sum_probs=172.2

Q ss_pred             cCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEec-------ccCCcceEEEEEecCCCCcEEEEEECCCcEE
Q 004468           48 GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIE-------TGHSANVFCTKFVPETSDELVVSGAGDAEVR  120 (751)
Q Consensus        48 gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~-------~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~  120 (751)
                      |.+..|.|..|+|||++|+|||.||.|-|||+.+|+....+.       .-|..+|.|+.|+.+  ...|++|+.||.|+
T Consensus       211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRD--sEMlAsGsqDGkIK  288 (508)
T KOG0275|consen  211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRD--SEMLASGSQDGKIK  288 (508)
T ss_pred             ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeeccc--HHHhhccCcCCcEE
Confidence            456678899999999999999999999999999987655441       357899999999999  58999999999999


Q ss_pred             EEECCCCCCCCCCCCCCCCceeec-ccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEe
Q 004468          121 LFNLSRFSGRGLDDNAITPSALYQ-CHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD  199 (751)
Q Consensus       121 vwd~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~  199 (751)
                      ||.+.++          .+++.|. .|+..|+++.|+.++ ..+++++.|.++|+.-+..++.                 
T Consensus       289 vWri~tG----------~ClRrFdrAHtkGvt~l~FSrD~-SqiLS~sfD~tvRiHGlKSGK~-----------------  340 (508)
T KOG0275|consen  289 VWRIETG----------QCLRRFDRAHTKGVTCLSFSRDN-SQILSASFDQTVRIHGLKSGKC-----------------  340 (508)
T ss_pred             EEEEecc----------hHHHHhhhhhccCeeEEEEccCc-chhhcccccceEEEeccccchh-----------------
Confidence            9999975          4577776 899999999999955 5666999999999999988874                 


Q ss_pred             cccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccc
Q 004468          200 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS  279 (751)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  279 (751)
                              +..+.+|...|+...|++ +++.+++++.||+|++|+..+.+             |+..|.|..      ..
T Consensus       341 --------LKEfrGHsSyvn~a~ft~-dG~~iisaSsDgtvkvW~~Ktte-------------C~~Tfk~~~------~d  392 (508)
T KOG0275|consen  341 --------LKEFRGHSSYVNEATFTD-DGHHIISASSDGTVKVWHGKTTE-------------CLSTFKPLG------TD  392 (508)
T ss_pred             --------HHHhcCccccccceEEcC-CCCeEEEecCCccEEEecCcchh-------------hhhhccCCC------Cc
Confidence                    445566889999999999 58999999999999999998765             566665543      34


Q ss_pred             cceEEEEEcCC-CCEEEEEeCCCcEEEEECCC
Q 004468          280 LHLTHVTFSPN-GEEVLLSYSGEHVYLMDVNH  310 (751)
Q Consensus       280 ~~vt~v~fspd-g~~Ll~~s~d~~I~lwdl~~  310 (751)
                      ++|+++..-|. -..++++...++|+|.++..
T Consensus       393 ~~vnsv~~~PKnpeh~iVCNrsntv~imn~qG  424 (508)
T KOG0275|consen  393 YPVNSVILLPKNPEHFIVCNRSNTVYIMNMQG  424 (508)
T ss_pred             ccceeEEEcCCCCceEEEEcCCCeEEEEeccc
Confidence            47888888884 45788888899999998876

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.96  E-value=5.9e-27  Score=232.64  Aligned_cols=212  Identities=17%  Similarity=0.262  Sum_probs=177.7

Q ss_pred             cccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEE
Q 004468           41 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR  120 (751)
Q Consensus        41 ~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~  120 (751)
                      .-+.+|..|++.|.+++.+|+.+++|||+.|-...||+..++..+..+ ++|+..|+++.|+.+  |.+||||..+|.|+
T Consensus        55 dS~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~el-tgHKDSVt~~~Fshd--gtlLATGdmsG~v~  131 (399)
T KOG0296|consen   55 DSLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGEL-TGHKDSVTCCSFSHD--GTLLATGDMSGKVL  131 (399)
T ss_pred             cceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEe-cCCCCceEEEEEccC--ceEEEecCCCccEE
Confidence            456789999999999999999999999999999999999999988888 999999999999999  89999999999999


Q ss_pred             EEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEec
Q 004468          121 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDL  200 (751)
Q Consensus       121 vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~  200 (751)
                      ||...++.          ....+..--..+-=+.|+| -.++|+.|+.||.+-+|.+.....+                 
T Consensus       132 v~~~stg~----------~~~~~~~e~~dieWl~WHp-~a~illAG~~DGsvWmw~ip~~~~~-----------------  183 (399)
T KOG0296|consen  132 VFKVSTGG----------EQWKLDQEVEDIEWLKWHP-RAHILLAGSTDGSVWMWQIPSQALC-----------------  183 (399)
T ss_pred             EEEcccCc----------eEEEeecccCceEEEEecc-cccEEEeecCCCcEEEEECCCccee-----------------
Confidence            99999752          2334433445566688999 7789999999999999998875322                 


Q ss_pred             ccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCcccc
Q 004468          201 RCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSL  280 (751)
Q Consensus       201 ~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  280 (751)
                              ..+.+|..++++=.|.|+ ++.++++..||+|++|++.+++++..+...                    ...
T Consensus       184 --------kv~~Gh~~~ct~G~f~pd-GKr~~tgy~dgti~~Wn~ktg~p~~~~~~~--------------------e~~  234 (399)
T KOG0296|consen  184 --------KVMSGHNSPCTCGEFIPD-GKRILTGYDDGTIIVWNPKTGQPLHKITQA--------------------EGL  234 (399)
T ss_pred             --------eEecCCCCCcccccccCC-CceEEEEecCceEEEEecCCCceeEEeccc--------------------ccC
Confidence                    223457888999999995 899999999999999999998765443211                    122


Q ss_pred             ceEEEEEcCCCCEEEEEeCCCcEEEEECCCCC
Q 004468          281 HLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG  312 (751)
Q Consensus       281 ~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~  312 (751)
                      ..+++.++..+..++.|..++.+++-+..+++
T Consensus       235 ~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgK  266 (399)
T KOG0296|consen  235 ELPCISLNLAGSTLTKGNSEGVACGVNNGSGK  266 (399)
T ss_pred             cCCccccccccceeEeccCCccEEEEccccce
Confidence            46789999999999999999999999887753

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.96  E-value=1.1e-26  Score=248.86  Aligned_cols=248  Identities=15%  Similarity=0.192  Sum_probs=185.4

Q ss_pred             hccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeE--EEEecccCCcceEEEEEecCCCCcEEEEEE
Q 004468           37 VRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKL--LHSIETGHSANVFCTKFVPETSDELVVSGA  114 (751)
Q Consensus        37 i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~--~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs  114 (751)
                      ...+.+.+++.||-+.|.+|.|+.|.++|++||.|-+++||++...+.  ...+ .+|++.|...-|..+  ...++|.+
T Consensus       132 ~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l-~gHkd~VvacfF~~~--~~~l~tvs  208 (893)
T KOG0291|consen  132 FNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLFTYAL-NGHKDYVVACFFGAN--SLDLYTVS  208 (893)
T ss_pred             cCcceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEeccccccceEec-cCCCcceEEEEeccC--cceEEEEe
Confidence            445677889999999999999999999999999999999999876554  4445 899999999999998  57899999


Q ss_pred             CCCcEEEEECCCCCCCCCC---------------CCCC--C-------CceeecccCCceeEEEEecCCCCEEEEEeCCC
Q 004468          115 GDAEVRLFNLSRFSGRGLD---------------DNAI--T-------PSALYQCHTRRVKKLAVEVGNPHVVWSASEDG  170 (751)
Q Consensus       115 ~Dg~V~vwd~~~~~~~~~~---------------~~~~--~-------~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg  170 (751)
                      .||.+.+|...........               +.+.  .       ....+......|++.+|++ ..++|++|-..|
T Consensus       209 kdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~-~t~~lvvgFssG  287 (893)
T KOG0291|consen  209 KDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHK-GTNLLVVGFSSG  287 (893)
T ss_pred             cCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccC-CceEEEEEecCC
Confidence            9999999998732211110               0000  0       0112233347799999999 778999999999


Q ss_pred             cEEEEecCCCCCCCCCCCCCCccc--------------------eEEEecccCceecccCCCCCccceEEEEEeCCCCcE
Q 004468          171 TLRQHDFRQGSSCPPAGSSHQECR--------------------NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHL  230 (751)
Q Consensus       171 ~I~iwDlr~~~~~~~~~~~~~~~~--------------------~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~  230 (751)
                      .+.+|.+-.-..+...........                    -.+|+.....  .+....+|...+++++++| |+.+
T Consensus       288 ~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEs--YVlKQQgH~~~i~~l~YSp-Dgq~  364 (893)
T KOG0291|consen  288 EFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSES--YVLKQQGHSDRITSLAYSP-DGQL  364 (893)
T ss_pred             eeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccc--eeeeccccccceeeEEECC-CCcE
Confidence            999998876544322111111111                    1233332221  2334456889999999999 5899


Q ss_pred             EEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004468          231 LLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (751)
Q Consensus       231 l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~  310 (751)
                      |++|+.||.|+|||...+-             |..+|       ..|.+ .|+.+.|+..|+.|++++.||+|+.||+..
T Consensus       365 iaTG~eDgKVKvWn~~Sgf-------------C~vTF-------teHts-~Vt~v~f~~~g~~llssSLDGtVRAwDlkR  423 (893)
T KOG0291|consen  365 IATGAEDGKVKVWNTQSGF-------------CFVTF-------TEHTS-GVTAVQFTARGNVLLSSSLDGTVRAWDLKR  423 (893)
T ss_pred             EEeccCCCcEEEEeccCce-------------EEEEe-------ccCCC-ceEEEEEEecCCEEEEeecCCeEEeeeecc
Confidence            9999999999999998753             55555       23555 599999999999999999999999999988


Q ss_pred             CC
Q 004468          311 AG  312 (751)
Q Consensus       311 ~~  312 (751)
                      ..
T Consensus       424 Yr  425 (893)
T KOG0291|consen  424 YR  425 (893)
T ss_pred             cc
Confidence            53

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.96  E-value=2.2e-27  Score=250.22  Aligned_cols=227  Identities=21%  Similarity=0.285  Sum_probs=156.7

Q ss_pred             EEECC---CCCEEEEEeCCCcEEEEeCCCCeE------EEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCC
Q 004468           56 ISWNS---KGSLLISGSDDTHINVWSYSSRKL------LHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSR  126 (751)
Q Consensus        56 l~~s~---dg~~LaSgs~Dg~I~IWd~~~~~~------~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~  126 (751)
                      ..|++   ...+||.+.+||.|.++|......      +... ..|.+.|+.++|.|.  ...|+++++|.++++||+..
T Consensus        55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~-~aH~nAifDl~wapg--e~~lVsasGDsT~r~Wdvk~  131 (720)
T KOG0321|consen   55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKP-LAHKNAIFDLKWAPG--ESLLVSASGDSTIRPWDVKT  131 (720)
T ss_pred             ccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhccc-ccccceeEeeccCCC--ceeEEEccCCceeeeeeecc
Confidence            66765   345899999999999999864322      2233 689999999999996  78999999999999999997


Q ss_pred             CCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCc--
Q 004468          127 FSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGA--  204 (751)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~--  204 (751)
                      .....        ...+.+|...|++++|.|+++.+|++|+.||.|.|||+|....-.    ....| +.++....+.  
T Consensus       132 s~l~G--------~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~----~e~~~-~~~~~~~n~~pt  198 (720)
T KOG0321|consen  132 SRLVG--------GRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDA----LEEFD-NRIYGRHNTAPT  198 (720)
T ss_pred             ceeec--------ceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhh----HHHHh-hhhhccccCCCC
Confidence            53221        335889999999999999999999999999999999999765110    00011 1111111110  


Q ss_pred             -----eecccCCCCCcc----ceEEEEEeCCCCcEEEEEeC-CCeEEEEeCCCCCCccccCCCCCCCCcccccccccccc
Q 004468          205 -----KRSLADPPKQTL----SLKSCDISSTRPHLLLVGGS-DAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSE  274 (751)
Q Consensus       205 -----~~~~~~~~~~~~----~v~~i~~sp~~~~~l~sgs~-D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (751)
                           ...+.....+..    .|+.+.| . |...||+++. |+.|+|||+|+.......+    +.....+  +.+   
T Consensus       199 pskp~~kr~~k~kA~s~ti~ssvTvv~f-k-De~tlaSaga~D~~iKVWDLRk~~~~~r~e----p~~~~~~--~t~---  267 (720)
T KOG0321|consen  199 PSKPLKKRIRKWKAASNTIFSSVTVVLF-K-DESTLASAGAADSTIKVWDLRKNYTAYRQE----PRGSDKY--PTH---  267 (720)
T ss_pred             CCchhhccccccccccCceeeeeEEEEE-e-ccceeeeccCCCcceEEEeecccccccccC----CCcccCc--cCc---
Confidence                 011111111222    2444444 4 4577887776 9999999999876433221    1111111  111   


Q ss_pred             CCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004468          275 HGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (751)
Q Consensus       275 ~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~  310 (751)
                       ......++++..+..|.+|++++.|+.||+||+..
T Consensus       268 -skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s  302 (720)
T KOG0321|consen  268 -SKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRS  302 (720)
T ss_pred             -ccceeeeEEEEecCCCCeEEEEecCCcEEEEeccc
Confidence             12233589999999999999999999999999887

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=2.8e-28  Score=241.78  Aligned_cols=246  Identities=19%  Similarity=0.274  Sum_probs=208.3

Q ss_pred             ccccccchhhhccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCC-CeEEEEecccCCcceEEEEEecCC
Q 004468           27 NHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSS-RKLLHSIETGHSANVFCTKFVPET  105 (751)
Q Consensus        27 ~~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~-~~~~~~l~~~h~~~V~~v~fsp~s  105 (751)
                      +.++++++.....  ++..|+||++.|..|+|+..|++||++|.|-.+++||..+ .+++..+ .+|.-.|.+++|.|. 
T Consensus       129 d~tikv~D~~tg~--~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~-~gh~h~vS~V~f~P~-  204 (406)
T KOG0295|consen  129 DATIKVFDTETGE--LERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSL-IGHEHGVSSVFFLPL-  204 (406)
T ss_pred             CceEEEEEccchh--hhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHh-cCcccceeeEEEEec-
Confidence            5677777755544  4899999999999999999999999999999999999876 4556666 799999999999999 


Q ss_pred             CCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCC
Q 004468          106 SDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPP  185 (751)
Q Consensus       106 ~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~  185 (751)
                       |.+|+|++.|.+|+.|++.++          -++.++.+|...|+.++.+. ++.++++|+.|.+|++|-+.+.+..  
T Consensus       205 -gd~ilS~srD~tik~We~~tg----------~cv~t~~~h~ewvr~v~v~~-DGti~As~s~dqtl~vW~~~t~~~k--  270 (406)
T KOG0295|consen  205 -GDHILSCSRDNTIKAWECDTG----------YCVKTFPGHSEWVRMVRVNQ-DGTIIASCSNDQTLRVWVVATKQCK--  270 (406)
T ss_pred             -CCeeeecccccceeEEecccc----------eeEEeccCchHhEEEEEecC-CeeEEEecCCCceEEEEEeccchhh--
Confidence             799999999999999999975          56899999999999999988 7899999999999999999887532  


Q ss_pred             CCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCC--------------CCcEEEEEeCCCeEEEEeCCCCCCc
Q 004468          186 AGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISST--------------RPHLLLVGGSDAFARLYDRRMLPPL  251 (751)
Q Consensus       186 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~--------------~~~~l~sgs~D~~IriwD~~~~~~~  251 (751)
                                             .....|...|.|++|-|.              .+.++++++.|++||+||+.++..+
T Consensus       271 -----------------------~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL  327 (406)
T KOG0295|consen  271 -----------------------AELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCL  327 (406)
T ss_pred             -----------------------hhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEE
Confidence                                   122235666777777653              2359999999999999999987533


Q ss_pred             cccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcceeeeecCCCceeEEeCC
Q 004468          252 TSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTP  331 (751)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp  331 (751)
                                   -.+       .||.+ +|..++|+|-|+||+++..|+++++||+++..+......+.+....+.|+.
T Consensus       328 -------------~tL-------~ghdn-wVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~  386 (406)
T KOG0295|consen  328 -------------FTL-------VGHDN-WVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHK  386 (406)
T ss_pred             -------------EEE-------ecccc-eeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCC
Confidence                         222       45655 799999999999999999999999999999888888888888888888887


Q ss_pred             CCC
Q 004468          332 TLN  334 (751)
Q Consensus       332 ~~~  334 (751)
                      +..
T Consensus       387 ~~p  389 (406)
T KOG0295|consen  387 TAP  389 (406)
T ss_pred             CCc
Confidence            654

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=1.6e-27  Score=258.54  Aligned_cols=220  Identities=19%  Similarity=0.264  Sum_probs=180.9

Q ss_pred             EeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEEC
Q 004468           45 ELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNL  124 (751)
Q Consensus        45 ~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~  124 (751)
                      .++..+..|-.|+|+|.-.+++++--.|.|.+||+.-+.++..| ..|.++|..|.|+|.  ..+|+||+.|-.|+||+.
T Consensus         4 kfEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rF-deHdGpVRgv~FH~~--qplFVSGGDDykIkVWnY   80 (1202)
T KOG0292|consen    4 KFESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRF-DEHDGPVRGVDFHPT--QPLFVSGGDDYKIKVWNY   80 (1202)
T ss_pred             hhhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhh-hccCCccceeeecCC--CCeEEecCCccEEEEEec
Confidence            34566788999999999999999999999999999999999999 899999999999999  799999999999999999


Q ss_pred             CCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCc
Q 004468          125 SRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGA  204 (751)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~  204 (751)
                      ...          +++.++.+|-+.|+.+.|++. --.++|+|.|.|||||+..+.++                      
T Consensus        81 k~r----------rclftL~GHlDYVRt~~FHhe-yPWIlSASDDQTIrIWNwqsr~~----------------------  127 (1202)
T KOG0292|consen   81 KTR----------RCLFTLLGHLDYVRTVFFHHE-YPWILSASDDQTIRIWNWQSRKC----------------------  127 (1202)
T ss_pred             ccc----------eehhhhccccceeEEeeccCC-CceEEEccCCCeEEEEeccCCce----------------------
Confidence            964          678999999999999999994 45778999999999999988763                      


Q ss_pred             eecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCC----C----------CCCCcccccccc
Q 004468          205 KRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKR----M----------SPPPCVNYFCPM  270 (751)
Q Consensus       205 ~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~----~----------~~~~~~~~~~~~  270 (751)
                         +....+|...|.|..|+|. ..++++++-|.+|||||+.-++.....+..    .          ....++-.    
T Consensus       128 ---iavltGHnHYVMcAqFhpt-EDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK----  199 (1202)
T KOG0292|consen  128 ---IAVLTGHNHYVMCAQFHPT-EDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVK----  199 (1202)
T ss_pred             ---EEEEecCceEEEeeccCCc-cceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeee----
Confidence               2233457889999999995 689999999999999999765533222110    0          00011111    


Q ss_pred             ccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004468          271 HLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (751)
Q Consensus       271 ~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~  310 (751)
                       ....||.. .|+-++|+|.-..|++|+.|..|++|.++.
T Consensus       200 -~VLEGHDR-GVNwaAfhpTlpliVSG~DDRqVKlWrmne  237 (1202)
T KOG0292|consen  200 -HVLEGHDR-GVNWAAFHPTLPLIVSGADDRQVKLWRMNE  237 (1202)
T ss_pred             -eeeccccc-ccceEEecCCcceEEecCCcceeeEEEecc
Confidence             11246655 499999999999999999999999998766

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.96  E-value=3.8e-27  Score=234.92  Aligned_cols=228  Identities=18%  Similarity=0.238  Sum_probs=172.3

Q ss_pred             cCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecC-CCCcEEEEEECCCcEEEEECCC
Q 004468           48 GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPE-TSDELVVSGAGDAEVRLFNLSR  126 (751)
Q Consensus        48 gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~-s~~~~l~sgs~Dg~V~vwd~~~  126 (751)
                      -|.+-|.+|.-.  ++.++||+.||+++|||.. |+...++ .||.++|.+++|.-. .....|++++.|.++++|-++.
T Consensus       103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~-Gk~~~~~-~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~  178 (423)
T KOG0313|consen  103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDLK-GKSIKTI-VGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNV  178 (423)
T ss_pred             cchhhhhhhccc--CceEEEeecCCeeEEEecC-CceEEEE-ecCCcceeeeEEEecCCccceEEEecCCceEEEEEecC
Confidence            378888888877  7899999999999999975 8888888 899999998888654 1123599999999999999986


Q ss_pred             CCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCcee
Q 004468          127 FSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKR  206 (751)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~  206 (751)
                      +...      .+.++...||...|-+++..+ ++..|+||+.|.+|.+|+......-...........+.-..-..+...
T Consensus       179 ~~~~------~~~~~~~~GHk~~V~sVsv~~-sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~  251 (423)
T KOG0313|consen  179 GENK------VKALKVCRGHKRSVDSVSVDS-SGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRT  251 (423)
T ss_pred             chhh------hhHHhHhcccccceeEEEecC-CCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccC
Confidence            5432      255667779999999999998 678999999999999999333211100000000000111111223333


Q ss_pred             cccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEE
Q 004468          207 SLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVT  286 (751)
Q Consensus       207 ~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~  286 (751)
                      .+....+|..+|.++.|++  ...+.+++.|.+|+.||+.++.....+                      ..+..++++.
T Consensus       252 P~vtl~GHt~~Vs~V~w~d--~~v~yS~SwDHTIk~WDletg~~~~~~----------------------~~~ksl~~i~  307 (423)
T KOG0313|consen  252 PLVTLEGHTEPVSSVVWSD--ATVIYSVSWDHTIKVWDLETGGLKSTL----------------------TTNKSLNCIS  307 (423)
T ss_pred             ceEEecccccceeeEEEcC--CCceEeecccceEEEEEeecccceeee----------------------ecCcceeEee
Confidence            4555678999999999998  579999999999999999987654332                      1122589999


Q ss_pred             EcCCCCEEEEEeCCCcEEEEECCC
Q 004468          287 FSPNGEEVLLSYSGEHVYLMDVNH  310 (751)
Q Consensus       287 fspdg~~Ll~~s~d~~I~lwdl~~  310 (751)
                      .+|..+.|++|+.|..|+|||.++
T Consensus       308 ~~~~~~Ll~~gssdr~irl~DPR~  331 (423)
T KOG0313|consen  308 YSPLSKLLASGSSDRHIRLWDPRT  331 (423)
T ss_pred             cccccceeeecCCCCceeecCCCC
Confidence            999999999999999999999777

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.96  E-value=6.3e-28  Score=227.77  Aligned_cols=205  Identities=18%  Similarity=0.266  Sum_probs=173.3

Q ss_pred             cEEeccCCCcEEEEEECC---CCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcE
Q 004468           43 ERELEGHQGCVNAISWNS---KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEV  119 (751)
Q Consensus        43 ~~~L~gH~~~V~~l~~s~---dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V  119 (751)
                      -.+..||+.+|-.|+|||   +|-+|+|++.|+.-.+-+-++|..+.+| .||++.|++.....+  ...-++++.|-+.
T Consensus         7 pl~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtf-eghkgavw~~~l~~n--a~~aasaaadfta   83 (334)
T KOG0278|consen    7 PLTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTF-EGHKGAVWSATLNKN--ATRAASAAADFTA   83 (334)
T ss_pred             ceEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEee-eccCcceeeeecCch--hhhhhhhcccchh
Confidence            346789999999999986   8999999999999999999999999999 899999999999887  5778899999999


Q ss_pred             EEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEe
Q 004468          120 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD  199 (751)
Q Consensus       120 ~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~  199 (751)
                      +|||.-++          ..++.|. |..-|+.++|+. +.+.|++|+.++.+|+||+...+..+               
T Consensus        84 kvw~a~tg----------delhsf~-hkhivk~~af~~-ds~~lltgg~ekllrvfdln~p~App---------------  136 (334)
T KOG0278|consen   84 KVWDAVTG----------DELHSFE-HKHIVKAVAFSQ-DSNYLLTGGQEKLLRVFDLNRPKAPP---------------  136 (334)
T ss_pred             hhhhhhhh----------hhhhhhh-hhheeeeEEecc-cchhhhccchHHHhhhhhccCCCCCc---------------
Confidence            99999875          3366665 999999999998 66888899999999999999876432               


Q ss_pred             cccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccc
Q 004468          200 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS  279 (751)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  279 (751)
                               ....+|...|..+-|... .+.|++++.|++||+||.++++.+.++..                      .
T Consensus       137 ---------~E~~ghtg~Ir~v~wc~e-D~~iLSSadd~tVRLWD~rTgt~v~sL~~----------------------~  184 (334)
T KOG0278|consen  137 ---------KEISGHTGGIRTVLWCHE-DKCILSSADDKTVRLWDHRTGTEVQSLEF----------------------N  184 (334)
T ss_pred             ---------hhhcCCCCcceeEEEecc-CceEEeeccCCceEEEEeccCcEEEEEec----------------------C
Confidence                     223447788999999885 57889989999999999999987665421                      1


Q ss_pred             cceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004468          280 LHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (751)
Q Consensus       280 ~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~  310 (751)
                      .+|+++.++++|++|.++ ..+.|.+||..+
T Consensus       185 s~VtSlEvs~dG~ilTia-~gssV~Fwdaks  214 (334)
T KOG0278|consen  185 SPVTSLEVSQDGRILTIA-YGSSVKFWDAKS  214 (334)
T ss_pred             CCCcceeeccCCCEEEEe-cCceeEEecccc
Confidence            259999999999976555 456899999877

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.95  E-value=1.1e-27  Score=237.15  Aligned_cols=201  Identities=17%  Similarity=0.248  Sum_probs=164.1

Q ss_pred             cEEeccCCCcEEEEEECCCC-CEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEE
Q 004468           43 ERELEGHQGCVNAISWNSKG-SLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRL  121 (751)
Q Consensus        43 ~~~L~gH~~~V~~l~~s~dg-~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~v  121 (751)
                      +..|.||.+.|.||+=+|.. ..+|||+.||.|+|||+....++.++ ..|.+.|..|++...    .++|++.|.+|+.
T Consensus        59 v~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f-~AH~G~V~Gi~v~~~----~~~tvgdDKtvK~  133 (433)
T KOG0268|consen   59 VGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTF-KAHEGLVRGICVTQT----SFFTVGDDKTVKQ  133 (433)
T ss_pred             hhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhhee-ecccCceeeEEeccc----ceEEecCCcceee
Confidence            55679999999999999976 78999999999999999999999999 899999999999863    6899999999999


Q ss_pred             EECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecc
Q 004468          122 FNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLR  201 (751)
Q Consensus       122 wd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~  201 (751)
                      |-+..           .+++++.+ ...+..|.-+- ....|+|||+  .|-|||.+...+..                 
T Consensus       134 wk~~~-----------~p~~tilg-~s~~~gIdh~~-~~~~FaTcGe--~i~IWD~~R~~Pv~-----------------  181 (433)
T KOG0268|consen  134 WKIDG-----------PPLHTILG-KSVYLGIDHHR-KNSVFATCGE--QIDIWDEQRDNPVS-----------------  181 (433)
T ss_pred             eeccC-----------Ccceeeec-ccccccccccc-ccccccccCc--eeeecccccCCccc-----------------
Confidence            99884           35666654 44566676655 4578999987  58899987655331                 


Q ss_pred             cCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccc
Q 004468          202 CGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLH  281 (751)
Q Consensus       202 ~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  281 (751)
                              ...-....|.++.|+|.....|++++.|+.|.|||+|..+++.+....                      ..
T Consensus       182 --------smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~----------------------mR  231 (433)
T KOG0268|consen  182 --------SMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILT----------------------MR  231 (433)
T ss_pred             --------eeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeee----------------------cc
Confidence                    111134578999999998899999999999999999998887654211                      13


Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004468          282 LTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (751)
Q Consensus       282 vt~v~fspdg~~Ll~~s~d~~I~lwdl~~  310 (751)
                      .+.|+|+|.+-.++++..|..+|.||+..
T Consensus       232 TN~IswnPeafnF~~a~ED~nlY~~DmR~  260 (433)
T KOG0268|consen  232 TNTICWNPEAFNFVAANEDHNLYTYDMRN  260 (433)
T ss_pred             ccceecCccccceeeccccccceehhhhh
Confidence            56799999888888999999999999776

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.95  E-value=7.8e-27  Score=259.70  Aligned_cols=256  Identities=26%  Similarity=0.385  Sum_probs=207.2

Q ss_pred             ccccccchhhhcccc--ccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeC-CCCeEEEEecccCCcceEEEEEec
Q 004468           27 NHSLQMHSSLVRRLS--QERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSY-SSRKLLHSIETGHSANVFCTKFVP  103 (751)
Q Consensus        27 ~~~l~~~~~~i~~~~--~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~-~~~~~~~~l~~~h~~~V~~v~fsp  103 (751)
                      ++.+.+|..  ...+  ..++|.+|...|++++|+|+|++|++|+.|++|+|||+ ..+..+.++ .+|...|++++|+|
T Consensus       180 ~~~i~~~~~--~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l-~gH~~~v~~~~f~p  256 (456)
T KOG0266|consen  180 DGLIRIWKL--EGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTL-KGHSTYVTSVAFSP  256 (456)
T ss_pred             CCcEEEeec--ccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEe-cCCCCceEEEEecC
Confidence            445555554  3333  77888999999999999999999999999999999999 556888888 79999999999999


Q ss_pred             CCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCC
Q 004468          104 ETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSC  183 (751)
Q Consensus       104 ~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~  183 (751)
                      .  ++++++|+.|++|+|||++++          +++..+.+|.+.|++++|++ ++++|++++.||.|++||+.++...
T Consensus       257 ~--g~~i~Sgs~D~tvriWd~~~~----------~~~~~l~~hs~~is~~~f~~-d~~~l~s~s~d~~i~vwd~~~~~~~  323 (456)
T KOG0266|consen  257 D--GNLLVSGSDDGTVRIWDVRTG----------ECVRKLKGHSDGISGLAFSP-DGNLLVSASYDGTIRVWDLETGSKL  323 (456)
T ss_pred             C--CCEEEEecCCCcEEEEeccCC----------eEEEeeeccCCceEEEEECC-CCCEEEEcCCCccEEEEECCCCcee
Confidence            9  799999999999999999974          67899999999999999999 7789999999999999999998621


Q ss_pred             CCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCc
Q 004468          184 PPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPC  263 (751)
Q Consensus       184 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~  263 (751)
                               |...           +....... .++++.|+| ++.++++++.|+.+++||++.+.....+         
T Consensus       324 ---------~~~~-----------~~~~~~~~-~~~~~~fsp-~~~~ll~~~~d~~~~~w~l~~~~~~~~~---------  372 (456)
T KOG0266|consen  324 ---------CLKL-----------LSGAENSA-PVTSVQFSP-NGKYLLSASLDRTLKLWDLRSGKSVGTY---------  372 (456)
T ss_pred             ---------eeec-----------ccCCCCCC-ceeEEEECC-CCcEEEEecCCCeEEEEEccCCcceeee---------
Confidence                     0000           11111123 699999999 5899999999999999999987643322         


Q ss_pred             cccccccccccCCccc--cceEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcceeeeec-CCCceeEEeCCCCCCcccCC
Q 004468          264 VNYFCPMHLSEHGRSS--LHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTV-GDASKIMSFTPTLNGLELQP  340 (751)
Q Consensus       264 ~~~~~~~~~~~~g~~~--~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~~~~~-~~~~~~~~~sp~~~~~~~~~  340 (751)
                                 .+|..  ..+.+..+++.|.++++|+.|+.|++||+.++........+ ...+..+.++|..+.++...
T Consensus       373 -----------~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s  441 (456)
T KOG0266|consen  373 -----------TGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSS  441 (456)
T ss_pred             -----------cccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecC
Confidence                       12222  13566677899999999999999999999997666666666 56667788888877776654

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.95  E-value=1.8e-26  Score=219.67  Aligned_cols=206  Identities=19%  Similarity=0.341  Sum_probs=169.3

Q ss_pred             EEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEe-cccCCcceEEEEEecCCCCcEEEEEECCCcEEEE
Q 004468           44 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSI-ETGHSANVFCTKFVPETSDELVVSGAGDAEVRLF  122 (751)
Q Consensus        44 ~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l-~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vw  122 (751)
                      +++++|.+.|.+|+|+.+|..||+|+.|+++.||+++..+..... ..+|.+.|-.++|.|.+ ..+|++++.|.+|++|
T Consensus        14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~-~d~~atas~dk~ir~w   92 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKH-PDLFATASGDKTIRIW   92 (313)
T ss_pred             HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCC-CcceEEecCCceEEEE
Confidence            678899999999999999999999999999999999877544432 26899999999999997 7899999999999999


Q ss_pred             ECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEeccc
Q 004468          123 NLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRC  202 (751)
Q Consensus       123 d~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~  202 (751)
                      |++..          +++.......+.+ -+.|+| ++.+++.++.|..|...|.|+.+...                  
T Consensus        93 d~r~~----------k~~~~i~~~~eni-~i~wsp-~g~~~~~~~kdD~it~id~r~~~~~~------------------  142 (313)
T KOG1407|consen   93 DIRSG----------KCTARIETKGENI-NITWSP-DGEYIAVGNKDDRITFIDARTYKIVN------------------  142 (313)
T ss_pred             EeccC----------cEEEEeeccCcce-EEEEcC-CCCEEEEecCcccEEEEEecccceee------------------
Confidence            99965          5566665444444 478999 66888899999999999999876321                  


Q ss_pred             CceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccce
Q 004468          203 GAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHL  282 (751)
Q Consensus       203 ~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v  282 (751)
                              .......+..++|+- .+++++....-|.|.|.....++++.++                    ..|.. ..
T Consensus       143 --------~~~~~~e~ne~~w~~-~nd~Fflt~GlG~v~ILsypsLkpv~si--------------------~AH~s-nC  192 (313)
T KOG1407|consen  143 --------EEQFKFEVNEISWNN-SNDLFFLTNGLGCVEILSYPSLKPVQSI--------------------KAHPS-NC  192 (313)
T ss_pred             --------hhcccceeeeeeecC-CCCEEEEecCCceEEEEecccccccccc--------------------ccCCc-ce
Confidence                    111345788889985 4677777777899999998888877655                    33443 48


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004468          283 THVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (751)
Q Consensus       283 t~v~fspdg~~Ll~~s~d~~I~lwdl~~  310 (751)
                      .+|.|+|+|+||++|+.|..+.|||++.
T Consensus       193 icI~f~p~GryfA~GsADAlvSLWD~~E  220 (313)
T KOG1407|consen  193 ICIEFDPDGRYFATGSADALVSLWDVDE  220 (313)
T ss_pred             EEEEECCCCceEeeccccceeeccChhH
Confidence            8999999999999999999999999877

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=3.2e-27  Score=235.15  Aligned_cols=247  Identities=19%  Similarity=0.292  Sum_probs=175.3

Q ss_pred             HHHHHhhhccCcCcccccccccchhhhccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCC------CCeE
Q 004468           11 IYDMLDTRHTDTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYS------SRKL   84 (751)
Q Consensus        11 ~~~~l~~r~~~~~~~~~~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~------~~~~   84 (751)
                      |..+|-+|++++-+.+-+.++  ..+..+--+.+.+.+|.|||++|.|+.++++||||++|..++||++.      +.++
T Consensus        19 i~~FL~QR~i~~~~~~~k~F~--~~~~~R~~~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KP   96 (609)
T KOG4227|consen   19 IESFLCQREIGSVKSVVKTFR--PDFQHRPFCQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKP   96 (609)
T ss_pred             eeeeeeecccCCChhhhhhhc--hhhhhcchhhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCC
Confidence            456788899998765543332  23444556777899999999999999999999999999999999975      3355


Q ss_pred             EEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeec--ccCCceeEEEEecCCCCE
Q 004468           85 LHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQ--CHTRRVKKLAVEVGNPHV  162 (751)
Q Consensus        85 ~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~--~h~~~V~~l~~sp~~~~~  162 (751)
                      +......|..+|+|++|.-.  +.+|++|+.+++|.+.|+++.          +.+.++.  ...+.|+.+..+|. .+.
T Consensus        97 I~~~~~~H~SNIF~L~F~~~--N~~~~SG~~~~~VI~HDiEt~----------qsi~V~~~~~~~~~VY~m~~~P~-DN~  163 (609)
T KOG4227|consen   97 IGVMEHPHRSNIFSLEFDLE--NRFLYSGERWGTVIKHDIETK----------QSIYVANENNNRGDVYHMDQHPT-DNT  163 (609)
T ss_pred             ceeccCccccceEEEEEccC--CeeEecCCCcceeEeeecccc----------eeeeeecccCcccceeecccCCC-Cce
Confidence            55554467799999999988  789999999999999999974          2244432  22348999999996 588


Q ss_pred             EEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEE
Q 004468          163 VWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARL  242 (751)
Q Consensus       163 l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~Iri  242 (751)
                      |++.+.+|.|.+||.|......          ..+            .+.........+-|+|..+.+|++.+.-+-+-+
T Consensus       164 ~~~~t~~~~V~~~D~Rd~~~~~----------~~~------------~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~  221 (609)
T KOG4227|consen  164 LIVVTRAKLVSFIDNRDRQNPI----------SLV------------LPANSGKNFYTAEFHPETPALILVNSETGGPNV  221 (609)
T ss_pred             EEEEecCceEEEEeccCCCCCC----------cee------------eecCCCccceeeeecCCCceeEEeccccCCCCc
Confidence            9999999999999999865220          000            011123456788999999999999999999999


Q ss_pred             EeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004468          243 YDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDV  308 (751)
Q Consensus       243 wD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl  308 (751)
                      ||+|+....           ..++  .+.+.... ......++.|+|+|+.|++--....-.+||+
T Consensus       222 ~D~R~~~~~-----------~~~~--~~~~~L~~-~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~  273 (609)
T KOG4227|consen  222 FDRRMQARP-----------VYQR--SMFKGLPQ-ENTEWMGSLWSPSGNQFMSIRRGKCPLYFDF  273 (609)
T ss_pred             eeeccccch-----------HHhh--hccccCcc-cchhhhheeeCCCCCeehhhhccCCCEEeee
Confidence            999986421           0000  00010000 0112467889999988775544333333443

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=99.95  E-value=6.9e-28  Score=242.06  Aligned_cols=242  Identities=19%  Similarity=0.269  Sum_probs=198.3

Q ss_pred             cccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCc
Q 004468           39 RLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAE  118 (751)
Q Consensus        39 ~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~  118 (751)
                      .+..+..++.|...|.++.|+++|.+++||+.+|.|++|+.. ...++.+...|...|.+++|+|+  +..|+|||.|++
T Consensus       127 ~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpn-mnnVk~~~ahh~eaIRdlafSpn--DskF~t~SdDg~  203 (464)
T KOG0284|consen  127 SFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPN-MNNVKIIQAHHAEAIRDLAFSPN--DSKFLTCSDDGT  203 (464)
T ss_pred             eeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccc-hhhhHHhhHhhhhhhheeccCCC--CceeEEecCCCe
Confidence            344556688999999999999999999999999999999976 33445553456699999999997  899999999999


Q ss_pred             EEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEE
Q 004468          119 VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILL  198 (751)
Q Consensus       119 V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~  198 (751)
                      |+|||....          +.-..+.+|.--|++++|+| ...+++++|.|..|++||.+++.+                
T Consensus       204 ikiWdf~~~----------kee~vL~GHgwdVksvdWHP-~kgLiasgskDnlVKlWDprSg~c----------------  256 (464)
T KOG0284|consen  204 IKIWDFRMP----------KEERVLRGHGWDVKSVDWHP-TKGLIASGSKDNLVKLWDPRSGSC----------------  256 (464)
T ss_pred             EEEEeccCC----------chhheeccCCCCcceeccCC-ccceeEEccCCceeEeecCCCcch----------------
Confidence            999999865          34567799999999999999 457999999999999999999874                


Q ss_pred             ecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCcc
Q 004468          199 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRS  278 (751)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  278 (751)
                               +.....|+..|..+.|+|+ +++|++++.|..+++||+|+.+.+..+                    ++|.
T Consensus       257 ---------l~tlh~HKntVl~~~f~~n-~N~Llt~skD~~~kv~DiR~mkEl~~~--------------------r~Hk  306 (464)
T KOG0284|consen  257 ---------LATLHGHKNTVLAVKFNPN-GNWLLTGSKDQSCKVFDIRTMKELFTY--------------------RGHK  306 (464)
T ss_pred             ---------hhhhhhccceEEEEEEcCC-CCeeEEccCCceEEEEehhHhHHHHHh--------------------hcch
Confidence                     3444557888999999995 699999999999999999977654433                    4565


Q ss_pred             ccceEEEEEcCC-CCEEEEEeCCCcEEEEECCCCC-cceeeeecCCCceeEEeCCCCCCcccCCC
Q 004468          279 SLHLTHVTFSPN-GEEVLLSYSGEHVYLMDVNHAG-GRAMRYTVGDASKIMSFTPTLNGLELQPP  341 (751)
Q Consensus       279 ~~~vt~v~fspd-g~~Ll~~s~d~~I~lwdl~~~~-~~~~~~~~~~~~~~~~~sp~~~~~~~~~~  341 (751)
                      . .|++++|+|- ...|.+|+.||.|..|.+.... ....-..+...+..++|+|-+..+.....
T Consensus       307 k-dv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsn  370 (464)
T KOG0284|consen  307 K-DVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSN  370 (464)
T ss_pred             h-hheeeccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCC
Confidence            5 4999999995 4567778889999999998422 33344556777889999998776665443

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=99.95  E-value=1.9e-26  Score=235.65  Aligned_cols=250  Identities=18%  Similarity=0.239  Sum_probs=204.7

Q ss_pred             cccccccchhhhccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCC
Q 004468           26 VNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPET  105 (751)
Q Consensus        26 ~~~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s  105 (751)
                      ++..+++|.   ....++.+|..|+++|.+|.|+..|++|+|++.|+++.|||..++.....+ .-|..+-.+|.|..+ 
T Consensus       255 ~~G~~riw~---~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f-~~~s~~~lDVdW~~~-  329 (524)
T KOG0273|consen  255 EDGEARIWN---KDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQF-EFHSAPALDVDWQSN-  329 (524)
T ss_pred             cCcEEEEEe---cCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEee-eeccCCccceEEecC-
Confidence            344455554   345567888999999999999999999999999999999999999988888 678888889999976 


Q ss_pred             CCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCC
Q 004468          106 SDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPP  185 (751)
Q Consensus       106 ~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~  185 (751)
                        ..|++++.|+.|+|+-+...          .|+.++.+|.+.|.+|.|.| .+.+|+|+|.|+|++||.+......  
T Consensus       330 --~~F~ts~td~~i~V~kv~~~----------~P~~t~~GH~g~V~alk~n~-tg~LLaS~SdD~TlkiWs~~~~~~~--  394 (524)
T KOG0273|consen  330 --DEFATSSTDGCIHVCKVGED----------RPVKTFIGHHGEVNALKWNP-TGSLLASCSDDGTLKIWSMGQSNSV--  394 (524)
T ss_pred             --ceEeecCCCceEEEEEecCC----------CcceeeecccCceEEEEECC-CCceEEEecCCCeeEeeecCCCcch--
Confidence              68999999999999999853          78999999999999999999 5689999999999999997665422  


Q ss_pred             CCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCC--------CcEEEEEeCCCeEEEEeCCCCCCccccCCC
Q 004468          186 AGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR--------PHLLLVGGSDAFARLYDRRMLPPLTSCQKR  257 (751)
Q Consensus       186 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~--------~~~l~sgs~D~~IriwD~~~~~~~~~~~~~  257 (751)
                                             ..+..|...|..+.|+|.+        +..+++++.|++|++||+..+.++..+   
T Consensus       395 -----------------------~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f---  448 (524)
T KOG0273|consen  395 -----------------------HDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTL---  448 (524)
T ss_pred             -----------------------hhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEee---
Confidence                                   2233466677777777753        468999999999999999988765443   


Q ss_pred             CCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcceeeeecCCCceeEEeCCCCCCcc
Q 004468          258 MSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLE  337 (751)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp~~~~~~  337 (751)
                                       ..|.. +|++|+|+|+|+||++|+.||.|.+|++.+++ .-..+.....+..++|+...+.+.
T Consensus       449 -----------------~kH~~-pVysvafS~~g~ylAsGs~dg~V~iws~~~~~-l~~s~~~~~~Ifel~Wn~~G~kl~  509 (524)
T KOG0273|consen  449 -----------------MKHQE-PVYSVAFSPNGRYLASGSLDGCVHIWSTKTGK-LVKSYQGTGGIFELCWNAAGDKLG  509 (524)
T ss_pred             -----------------ccCCC-ceEEEEecCCCcEEEecCCCCeeEeccccchh-eeEeecCCCeEEEEEEcCCCCEEE
Confidence                             23444 69999999999999999999999999999964 334444555678889988776654


Q ss_pred             cCC
Q 004468          338 LQP  340 (751)
Q Consensus       338 ~~~  340 (751)
                      ...
T Consensus       510 ~~~  512 (524)
T KOG0273|consen  510 ACA  512 (524)
T ss_pred             EEe
Confidence            443

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.95  E-value=1.6e-26  Score=238.00  Aligned_cols=233  Identities=18%  Similarity=0.257  Sum_probs=173.1

Q ss_pred             cccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCC----eEEEEecccCCcceEEEEEecCCCCcEEEEEECC
Q 004468           41 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSR----KLLHSIETGHSANVFCTKFVPETSDELVVSGAGD  116 (751)
Q Consensus        41 ~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~----~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~D  116 (751)
                      .....|++|+..|.++++.|.|-+|+|||.|.+|++||+...    +.-..+.......|.++.|+|.  +..|+..+..
T Consensus       158 shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~T--g~~iLvvsg~  235 (641)
T KOG0772|consen  158 SHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVT--GDQILVVSGS  235 (641)
T ss_pred             cceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCC--CCeEEEEecC
Confidence            455678999999999999999999999999999999998632    2333443455667999999998  6778877888


Q ss_pred             CcEEEEECCCCCCC-CCC-CCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccc
Q 004468          117 AEVRLFNLSRFSGR-GLD-DNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECR  194 (751)
Q Consensus       117 g~V~vwd~~~~~~~-~~~-~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~  194 (751)
                      ..++|+|-...... +.. +.=+.-+..-++|...+++.+|+|.+...|+|++.||++|+||+...+..          .
T Consensus       236 aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q----------~  305 (641)
T KOG0772|consen  236 AQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQ----------L  305 (641)
T ss_pred             cceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhh----------e
Confidence            89999998743211 000 00011223446899999999999999899999999999999999876532          1


Q ss_pred             eEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCcccccccccccc
Q 004468          195 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSE  274 (751)
Q Consensus       195 ~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (751)
                      .++....         ..+....+++|+|+|+ +.+||+|+.||.|.+||.+.....        +   .......|.. 
T Consensus       306 qVik~k~---------~~g~Rv~~tsC~~nrd-g~~iAagc~DGSIQ~W~~~~~~v~--------p---~~~vk~AH~~-  363 (641)
T KOG0772|consen  306 QVIKTKP---------AGGKRVPVTSCAWNRD-GKLIAAGCLDGSIQIWDKGSRTVR--------P---VMKVKDAHLP-  363 (641)
T ss_pred             eEEeecc---------CCCcccCceeeecCCC-cchhhhcccCCceeeeecCCcccc--------c---ceEeeeccCC-
Confidence            2222111         1234578999999995 789999999999999998654311        0   1111122222 


Q ss_pred             CCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 004468          275 HGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (751)
Q Consensus       275 ~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~  311 (751)
                          +..|++|+||+||++|++=+.|++++|||+++.
T Consensus       364 ----g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~  396 (641)
T KOG0772|consen  364 ----GQDITSISFSYDGNYLLSRGFDDTLKVWDLRQF  396 (641)
T ss_pred             ----CCceeEEEeccccchhhhccCCCceeeeecccc
Confidence                124999999999999999999999999999983

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=2.7e-26  Score=217.52  Aligned_cols=201  Identities=16%  Similarity=0.226  Sum_probs=157.7

Q ss_pred             EEEEECCC-CCEEEEE-------eCCCcEEEEeCCCCeEEEEec-ccCCcceEEEEEecCCCCcEEEEEECCCcEEEEEC
Q 004468           54 NAISWNSK-GSLLISG-------SDDTHINVWSYSSRKLLHSIE-TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNL  124 (751)
Q Consensus        54 ~~l~~s~d-g~~LaSg-------s~Dg~I~IWd~~~~~~~~~l~-~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~  124 (751)
                      .++.|||- .++||.+       ...|++.|-++...+-+..+. -.-.+.++.|+|++.. .+.+++++.||+++|||+
T Consensus        12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~-e~~~~~a~GDGSLrl~d~   90 (311)
T KOG0277|consen   12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENH-ENQVIAASGDGSLRLFDL   90 (311)
T ss_pred             ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCC-cceEEEEecCceEEEecc
Confidence            47899992 2334433       247889999986444333321 1346789999999997 789999999999999997


Q ss_pred             CCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCc
Q 004468          125 SRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGA  204 (751)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~  204 (751)
                      ....         .|++.++.|...|.++.|++.....++++|.|++|++||...+..                      
T Consensus        91 ~~~s---------~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~S----------------------  139 (311)
T KOG0277|consen   91 TMPS---------KPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNS----------------------  139 (311)
T ss_pred             CCCC---------cchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcc----------------------
Confidence            6432         689999999999999999998888999999999999999877653                      


Q ss_pred             eecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEE
Q 004468          205 KRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTH  284 (751)
Q Consensus       205 ~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~  284 (751)
                         +.++.+|...|....|+|..++++++++.|+++++||+|..-..              ...+.      |. ..|.+
T Consensus       140 ---v~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~--------------~~i~a------h~-~Eil~  195 (311)
T KOG0277|consen  140 ---VQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKF--------------MSIEA------HN-SEILC  195 (311)
T ss_pred             ---eEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCce--------------eEEEe------cc-ceeEe
Confidence               23345578889999999999999999999999999999853211              11122      32 24999


Q ss_pred             EEEcC-CCCEEEEEeCCCcEEEEECCC
Q 004468          285 VTFSP-NGEEVLLSYSGEHVYLMDVNH  310 (751)
Q Consensus       285 v~fsp-dg~~Ll~~s~d~~I~lwdl~~  310 (751)
                      +.|+. +.+.|++|+.|+.|++||+++
T Consensus       196 cdw~ky~~~vl~Tg~vd~~vr~wDir~  222 (311)
T KOG0277|consen  196 CDWSKYNHNVLATGGVDNLVRGWDIRN  222 (311)
T ss_pred             ecccccCCcEEEecCCCceEEEEehhh
Confidence            99998 566788888999999999988

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=1.7e-26  Score=250.64  Aligned_cols=277  Identities=20%  Similarity=0.233  Sum_probs=216.8

Q ss_pred             ccccccchhhhccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCC
Q 004468           27 NHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETS  106 (751)
Q Consensus        27 ~~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~  106 (751)
                      ...++.|+-...+  ++..+.+|.|+|..+.|+|++.+++||++|.+|+||++++.+++.++ .||-+.|..+.|++.  
T Consensus        30 sG~IQlWDYRM~t--li~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL-~GHlDYVRt~~FHhe--  104 (1202)
T KOG0292|consen   30 SGVIQLWDYRMGT--LIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTL-LGHLDYVRTVFFHHE--  104 (1202)
T ss_pred             Cceeeeehhhhhh--HHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhh-ccccceeEEeeccCC--
Confidence            4567777765544  68889999999999999999999999999999999999999999999 899999999999999  


Q ss_pred             CcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCC
Q 004468          107 DELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPA  186 (751)
Q Consensus       107 ~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~  186 (751)
                      -..|+|+|.|.+|+||+..+.          +++.++.||+..|.|..|+| ...+++|+|-|.+||+||+..-+.....
T Consensus       105 yPWIlSASDDQTIrIWNwqsr----------~~iavltGHnHYVMcAqFhp-tEDlIVSaSLDQTVRVWDisGLRkk~~~  173 (1202)
T KOG0292|consen  105 YPWILSASDDQTIRIWNWQSR----------KCIAVLTGHNHYVMCAQFHP-TEDLIVSASLDQTVRVWDISGLRKKNKA  173 (1202)
T ss_pred             CceEEEccCCCeEEEEeccCC----------ceEEEEecCceEEEeeccCC-ccceEEEecccceEEEEeecchhccCCC
Confidence            689999999999999999975          67999999999999999999 4579999999999999998764332111


Q ss_pred             CCC-CC--ccceEEEeccc-CceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCC
Q 004468          187 GSS-HQ--ECRNILLDLRC-GAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPP  262 (751)
Q Consensus       187 ~~~-~~--~~~~~l~~~~~-~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~  262 (751)
                      ... ..  .....-.++.. ..........+|.-.|+-++|+|. -.+|++|+.|..|++|.+...+.- .         
T Consensus       174 pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpT-lpliVSG~DDRqVKlWrmnetKaW-E---------  242 (1202)
T KOG0292|consen  174 PGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPT-LPLIVSGADDRQVKLWRMNETKAW-E---------  242 (1202)
T ss_pred             CCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCC-cceEEecCCcceeeEEEeccccce-e---------
Confidence            110 00  00000000100 011122335678889999999996 579999999999999988754310 0         


Q ss_pred             ccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcceeeeecCCCceeEEeCCCCCCcccC
Q 004468          263 CVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQ  339 (751)
Q Consensus       263 ~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~  339 (751)
                       + .-      -+||.+ .|+++-|+|..+.+++++.|+.|+|||++.......+....+.-..++.+|..+-.+..
T Consensus       243 -v-Dt------crgH~n-nVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAg  310 (1202)
T KOG0292|consen  243 -V-DT------CRGHYN-NVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAG  310 (1202)
T ss_pred             -e-hh------hhcccC-CcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeee
Confidence             0 01      156666 59999999999999999999999999999976666665666677788888888766544

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.95  E-value=9.3e-28  Score=235.91  Aligned_cols=218  Identities=18%  Similarity=0.316  Sum_probs=183.8

Q ss_pred             ccccccchhhhccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCC
Q 004468           27 NHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETS  106 (751)
Q Consensus        27 ~~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~  106 (751)
                      ++++++|+  ...+.+.+.|.||+|.|.|+.|.  .+.|+|||.|.+|+|||+.+++++.++ .+|..+|..+.|+.   
T Consensus       216 DnTikiWD--~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~tl-ihHceaVLhlrf~n---  287 (499)
T KOG0281|consen  216 DNTIKIWD--KNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLNTL-IHHCEAVLHLRFSN---  287 (499)
T ss_pred             cCceEEec--cccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhhHH-hhhcceeEEEEEeC---
Confidence            57777877  46677899999999999999996  459999999999999999999999998 79999999999984   


Q ss_pred             CcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCC
Q 004468          107 DELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPA  186 (751)
Q Consensus       107 ~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~  186 (751)
                       .+++|+|.|.+|.|||+..+..       ..+.+++.+|...|+.+.|+   .++++|+|.|.+|++|++.+.+..   
T Consensus       288 -g~mvtcSkDrsiaVWdm~sps~-------it~rrVLvGHrAaVNvVdfd---~kyIVsASgDRTikvW~~st~efv---  353 (499)
T KOG0281|consen  288 -GYMVTCSKDRSIAVWDMASPTD-------ITLRRVLVGHRAAVNVVDFD---DKYIVSASGDRTIKVWSTSTCEFV---  353 (499)
T ss_pred             -CEEEEecCCceeEEEeccCchH-------HHHHHHHhhhhhheeeeccc---cceEEEecCCceEEEEeccceeee---
Confidence             5999999999999999987542       24567889999999999995   369999999999999999987632   


Q ss_pred             CCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCcccc
Q 004468          187 GSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNY  266 (751)
Q Consensus       187 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~  266 (751)
                                            ....+|.-.|.|+.+.   ++++++|+.|.+||+||+..+..+.             .
T Consensus       354 ----------------------Rtl~gHkRGIAClQYr---~rlvVSGSSDntIRlwdi~~G~cLR-------------v  395 (499)
T KOG0281|consen  354 ----------------------RTLNGHKRGIACLQYR---DRLVVSGSSDNTIRLWDIECGACLR-------------V  395 (499)
T ss_pred             ----------------------hhhhcccccceehhcc---CeEEEecCCCceEEEEeccccHHHH-------------H
Confidence                                  3334567778777774   6899999999999999999876443             3


Q ss_pred             ccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcc
Q 004468          267 FCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGR  314 (751)
Q Consensus       267 ~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~  314 (751)
                      +       .||... |.++.|.  .+.+++|+.||+|++||+..+..+
T Consensus       396 L-------eGHEeL-vRciRFd--~krIVSGaYDGkikvWdl~aaldp  433 (499)
T KOG0281|consen  396 L-------EGHEEL-VRCIRFD--NKRIVSGAYDGKIKVWDLQAALDP  433 (499)
T ss_pred             H-------hchHHh-hhheeec--CceeeeccccceEEEEecccccCC
Confidence            3       566663 8899984  678999999999999999986544

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=2.9e-26  Score=214.88  Aligned_cols=256  Identities=22%  Similarity=0.288  Sum_probs=212.7

Q ss_pred             ccccccccchhhhccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecC
Q 004468           25 DVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPE  104 (751)
Q Consensus        25 ~~~~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~  104 (751)
                      ..++.++.|...  +..+++++.||..+|..++.+.|...+++|+.|+.|.+||+.+|+.+..+ .+|.+.|+.|+|+.+
T Consensus        36 GsdrtvrLWNp~--rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~-rgH~aqVNtV~fNee  112 (307)
T KOG0316|consen   36 GSDRTVRLWNPL--RGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRF-RGHLAQVNTVRFNEE  112 (307)
T ss_pred             CCCceEEeeccc--ccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeec-ccccceeeEEEecCc
Confidence            457888988854  56689999999999999999999999999999999999999999999999 899999999999998


Q ss_pred             CCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCC
Q 004468          105 TSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCP  184 (751)
Q Consensus       105 s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~  184 (751)
                        ...+++|+.|.+|++||.+...        .+|++.+..-.+.|.+|..+   .+.|++|+-||++|.||+|.++...
T Consensus       113 --sSVv~SgsfD~s~r~wDCRS~s--------~ePiQildea~D~V~Si~v~---~heIvaGS~DGtvRtydiR~G~l~s  179 (307)
T KOG0316|consen  113 --SSVVASGSFDSSVRLWDCRSRS--------FEPIQILDEAKDGVSSIDVA---EHEIVAGSVDGTVRTYDIRKGTLSS  179 (307)
T ss_pred             --ceEEEeccccceeEEEEcccCC--------CCccchhhhhcCceeEEEec---ccEEEeeccCCcEEEEEeecceeeh
Confidence              5899999999999999998653        37899999999999999985   4789999999999999999987331


Q ss_pred             CCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCcc
Q 004468          185 PAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCV  264 (751)
Q Consensus       185 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~  264 (751)
                                                 .....+|+|++|++ +++..++++.|+++|+.|..+++.+.++          
T Consensus       180 ---------------------------Dy~g~pit~vs~s~-d~nc~La~~l~stlrLlDk~tGklL~sY----------  221 (307)
T KOG0316|consen  180 ---------------------------DYFGHPITSVSFSK-DGNCSLASSLDSTLRLLDKETGKLLKSY----------  221 (307)
T ss_pred             ---------------------------hhcCCcceeEEecC-CCCEEEEeeccceeeecccchhHHHHHh----------
Confidence                                       11245899999999 5899999999999999999998866554          


Q ss_pred             ccccccccccCCcccc-ceEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcceeeeecCCC-ceeEEeCCCCCCcccCCCc
Q 004468          265 NYFCPMHLSEHGRSSL-HLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDA-SKIMSFTPTLNGLELQPPI  342 (751)
Q Consensus       265 ~~~~~~~~~~~g~~~~-~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~~~~~~~~-~~~~~~sp~~~~~~~~~~~  342 (751)
                                .||.+. .-..++++.....+++|+.||.|++||+.+.........+..+ +..+.++|.......+...
T Consensus       222 ----------kGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~~  291 (307)
T KOG0316|consen  222 ----------KGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATGH  291 (307)
T ss_pred             ----------cccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEecCC
Confidence                      223221 1345678888889999999999999999997655555544555 6678888887766555444


Q ss_pred             cc
Q 004468          343 HD  344 (751)
Q Consensus       343 ~~  344 (751)
                      ..
T Consensus       292 ~~  293 (307)
T KOG0316|consen  292 GD  293 (307)
T ss_pred             ce
Confidence            33

>PTZ00421 coronin; Provisional

Probab=99.95  E-value=1.6e-25  Score=248.40  Aligned_cols=232  Identities=17%  Similarity=0.278  Sum_probs=174.7

Q ss_pred             EEeccCCCcEEEEEECC-CCCEEEEEeCCCcEEEEeCCCCe-------EEEEecccCCcceEEEEEecCCCCcEEEEEEC
Q 004468           44 RELEGHQGCVNAISWNS-KGSLLISGSDDTHINVWSYSSRK-------LLHSIETGHSANVFCTKFVPETSDELVVSGAG  115 (751)
Q Consensus        44 ~~L~gH~~~V~~l~~s~-dg~~LaSgs~Dg~I~IWd~~~~~-------~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~  115 (751)
                      ..|.||++.|++++|+| ++++||||+.|++|+|||+.++.       .+..+ .+|...|.+++|+|.. +.+|++|+.
T Consensus        69 ~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L-~gH~~~V~~l~f~P~~-~~iLaSgs~  146 (493)
T PTZ00421         69 PILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHL-QGHTKKVGIVSFHPSA-MNVLASAGA  146 (493)
T ss_pred             ceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEe-cCCCCcEEEEEeCcCC-CCEEEEEeC
Confidence            35889999999999999 88999999999999999987642       45566 7999999999999984 479999999


Q ss_pred             CCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccce
Q 004468          116 DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRN  195 (751)
Q Consensus       116 Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~  195 (751)
                      |++|+|||+..+          ..+..+.+|...|.+++|+| ++.+|++++.||+|++||+++++..            
T Consensus       147 DgtVrIWDl~tg----------~~~~~l~~h~~~V~sla~sp-dG~lLatgs~Dg~IrIwD~rsg~~v------------  203 (493)
T PTZ00421        147 DMVVNVWDVERG----------KAVEVIKCHSDQITSLEWNL-DGSLLCTTSKDKKLNIIDPRDGTIV------------  203 (493)
T ss_pred             CCEEEEEECCCC----------eEEEEEcCCCCceEEEEEEC-CCCEEEEecCCCEEEEEECCCCcEE------------
Confidence            999999999864          45678889999999999999 6789999999999999999987522            


Q ss_pred             EEEecccCceecccCCCCCc-cceEEEEEeCCCCcEEEEEe----CCCeEEEEeCCCCCCccccCCCCCCCCcccccccc
Q 004468          196 ILLDLRCGAKRSLADPPKQT-LSLKSCDISSTRPHLLLVGG----SDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPM  270 (751)
Q Consensus       196 ~l~~~~~~~~~~~~~~~~~~-~~v~~i~~sp~~~~~l~sgs----~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (751)
                        ..+           ..|. ..+..+.|.+.+ ..+++++    .|+.|++||+++.....            ...   
T Consensus       204 --~tl-----------~~H~~~~~~~~~w~~~~-~~ivt~G~s~s~Dr~VklWDlr~~~~p~------------~~~---  254 (493)
T PTZ00421        204 --SSV-----------EAHASAKSQRCLWAKRK-DLIITLGCSKSQQRQIMLWDTRKMASPY------------STV---  254 (493)
T ss_pred             --EEE-----------ecCCCCcceEEEEcCCC-CeEEEEecCCCCCCeEEEEeCCCCCCce------------eEe---
Confidence              000           1122 123456788854 4555443    48999999998754210            000   


Q ss_pred             ccccCCccccceEEEEEcCCCCEEEEEe-CCCcEEEEECCCCCccee-eeecCCCceeEEeCCCC
Q 004468          271 HLSEHGRSSLHLTHVTFSPNGEEVLLSY-SGEHVYLMDVNHAGGRAM-RYTVGDASKIMSFTPTL  333 (751)
Q Consensus       271 ~~~~~g~~~~~vt~v~fspdg~~Ll~~s-~d~~I~lwdl~~~~~~~~-~~~~~~~~~~~~~sp~~  333 (751)
                          ..+....+....|++++++|++++ .|+.|++||+.++..... .+....+.+.++|.|..
T Consensus       255 ----~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk~  315 (493)
T PTZ00421        255 ----DLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPKW  315 (493)
T ss_pred             ----ccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEecccc
Confidence                001112366678999999999887 599999999998653322 23344566777777753

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.94  E-value=4.7e-25  Score=236.42  Aligned_cols=236  Identities=20%  Similarity=0.322  Sum_probs=188.0

Q ss_pred             EEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEE
Q 004468           44 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFN  123 (751)
Q Consensus        44 ~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd  123 (751)
                      .++.||...|.++++|.+...++||+. +.|+||+..+.+++.++.   .+.+.+..|.|.  ++++++|...|.+.|||
T Consensus       367 i~~~GHR~dVRsl~vS~d~~~~~Sga~-~SikiWn~~t~kciRTi~---~~y~l~~~Fvpg--d~~Iv~G~k~Gel~vfd  440 (888)
T KOG0306|consen  367 IEIGGHRSDVRSLCVSSDSILLASGAG-ESIKIWNRDTLKCIRTIT---CGYILASKFVPG--DRYIVLGTKNGELQVFD  440 (888)
T ss_pred             eeeccchhheeEEEeecCceeeeecCC-CcEEEEEccCcceeEEec---cccEEEEEecCC--CceEEEeccCCceEEEE
Confidence            457799999999999999999999876 489999999999999993   338999999999  89999999999999999


Q ss_pred             CCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccC
Q 004468          124 LSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCG  203 (751)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~  203 (751)
                      +...          ..+.+...|.+.+++++.+| ++.-+++||.|.+|++||+.-....       ....+.+..+...
T Consensus       441 laS~----------~l~Eti~AHdgaIWsi~~~p-D~~g~vT~saDktVkfWdf~l~~~~-------~gt~~k~lsl~~~  502 (888)
T KOG0306|consen  441 LASA----------SLVETIRAHDGAIWSISLSP-DNKGFVTGSADKTVKFWDFKLVVSV-------PGTQKKVLSLKHT  502 (888)
T ss_pred             eehh----------hhhhhhhccccceeeeeecC-CCCceEEecCCcEEEEEeEEEEecc-------Ccccceeeeeccc
Confidence            9864          45777889999999999999 5678889999999999998643311       0011111111111


Q ss_pred             ceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceE
Q 004468          204 AKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLT  283 (751)
Q Consensus       204 ~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt  283 (751)
                      ...      .-...|-|+.+|| ++++|+++--|.+|+||-+.+++-.                    +...||.- +|.
T Consensus       503 rtL------el~ddvL~v~~Sp-dgk~LaVsLLdnTVkVyflDtlKFf--------------------lsLYGHkL-PV~  554 (888)
T KOG0306|consen  503 RTL------ELEDDVLCVSVSP-DGKLLAVSLLDNTVKVYFLDTLKFF--------------------LSLYGHKL-PVL  554 (888)
T ss_pred             eEE------eccccEEEEEEcC-CCcEEEEEeccCeEEEEEecceeee--------------------eeeccccc-cee
Confidence            111      1245789999999 5899999999999999999876532                    12256765 899


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECCCCCcceeeeecCCCceeEEeCC
Q 004468          284 HVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTP  331 (751)
Q Consensus       284 ~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp  331 (751)
                      ++..|||++.+++|+.|..|++|-++-|.+..-.+.|.+.+..+.|-|
T Consensus       555 smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P  602 (888)
T KOG0306|consen  555 SMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLP  602 (888)
T ss_pred             EEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcc
Confidence            999999999999999999999999998776666666666666666655

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.94  E-value=2.8e-24  Score=205.28  Aligned_cols=238  Identities=20%  Similarity=0.321  Sum_probs=190.4

Q ss_pred             EeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEEC
Q 004468           45 ELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNL  124 (751)
Q Consensus        45 ~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~  124 (751)
                      .|+||..+++.|.++.+|.+|.||+.|.++.||-..+|+.+.++ .||++.|+|+...-+  .+.++||+.|.+++|||+
T Consensus         5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty-~GHtGavW~~Did~~--s~~liTGSAD~t~kLWDv   81 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTY-DGHTGAVWCCDIDWD--SKHLITGSADQTAKLWDV   81 (327)
T ss_pred             ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeee-cCCCceEEEEEecCC--cceeeeccccceeEEEEc
Confidence            47899999999999999999999999999999999899999999 899999999999988  489999999999999999


Q ss_pred             CCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeC-----CCcEEEEecCCCCCCCCCCCCCCccceEEEe
Q 004468          125 SRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASE-----DGTLRQHDFRQGSSCPPAGSSHQECRNILLD  199 (751)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~-----Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~  199 (751)
                      .++          +.+..++ -..+|+.+.|++ ++++++.+.+     -+.|.++|++......    ...++      
T Consensus        82 ~tG----------k~la~~k-~~~~Vk~~~F~~-~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~----~s~ep------  139 (327)
T KOG0643|consen   82 ETG----------KQLATWK-TNSPVKRVDFSF-GGNLILASTDKQMGYTCFVSVFDIRDDSSDI----DSEEP------  139 (327)
T ss_pred             CCC----------cEEEEee-cCCeeEEEeecc-CCcEEEEEehhhcCcceEEEEEEccCChhhh----cccCc------
Confidence            976          4455555 577899999999 6677665544     3678999998654210    00111      


Q ss_pred             cccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccc
Q 004468          200 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS  279 (751)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  279 (751)
                              +...+.+...++.+-|.|. +.+|++|..||.|.+||++++..+....                   .-|..
T Consensus       140 --------~~kI~t~~skit~a~Wg~l-~~~ii~Ghe~G~is~~da~~g~~~v~s~-------------------~~h~~  191 (327)
T KOG0643|consen  140 --------YLKIPTPDSKITSALWGPL-GETIIAGHEDGSISIYDARTGKELVDSD-------------------EEHSS  191 (327)
T ss_pred             --------eEEecCCccceeeeeeccc-CCEEEEecCCCcEEEEEcccCceeeech-------------------hhhcc
Confidence                    1111224477899999995 7999999999999999999875332110                   11333


Q ss_pred             cceEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcceeeeecCCCceeEEeCCCCCCcc
Q 004468          280 LHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLE  337 (751)
Q Consensus       280 ~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp~~~~~~  337 (751)
                       .|+.+.|+||..++++++.|.+-+|||+.+. .....|....+++..+++|..+.+.
T Consensus       192 -~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl-~v~Kty~te~PvN~aaisP~~d~Vi  247 (327)
T KOG0643|consen  192 -KINDLQFSRDRTYFITGSKDTTAKLVDVRTL-EVLKTYTTERPVNTAAISPLLDHVI  247 (327)
T ss_pred             -ccccccccCCcceEEecccCccceeeeccce-eeEEEeeecccccceecccccceEE
Confidence             5999999999999999999999999999994 4566777788888888888765443

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=6.6e-26  Score=214.95  Aligned_cols=225  Identities=18%  Similarity=0.312  Sum_probs=190.2

Q ss_pred             ccccccchhhhccccccEEeccCCCcEEEEEECC-CCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCC
Q 004468           27 NHSLQMHSSLVRRLSQERELEGHQGCVNAISWNS-KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPET  105 (751)
Q Consensus        27 ~~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~-dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s  105 (751)
                      +.+|++++ ....-++++.++.|+.+|.++.|++ .++.++++|.|++|+||+...+..+.++ .||...|..++|+|..
T Consensus        82 DGSLrl~d-~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf-~gh~~~Iy~a~~sp~~  159 (311)
T KOG0277|consen   82 DGSLRLFD-LTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTF-NGHNSCIYQAAFSPHI  159 (311)
T ss_pred             CceEEEec-cCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEee-cCCccEEEEEecCCCC
Confidence            57888888 5566679999999999999999998 5668888899999999999999999999 8999999999999997


Q ss_pred             CCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCC
Q 004468          106 SDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPP  185 (751)
Q Consensus       106 ~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~  185 (751)
                       +++++++|.|+++++||++.. +        + ...+..|...+.++.|+.-+.++++||+.|+.||+||+|.-+..  
T Consensus       160 -~nlfas~Sgd~~l~lwdvr~~-g--------k-~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~p--  226 (311)
T KOG0277|consen  160 -PNLFASASGDGTLRLWDVRSP-G--------K-FMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTP--  226 (311)
T ss_pred             -CCeEEEccCCceEEEEEecCC-C--------c-eeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhcccc--
Confidence             799999999999999999865 3        2 23488899999999999989999999999999999999986532  


Q ss_pred             CCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccc
Q 004468          186 AGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVN  265 (751)
Q Consensus       186 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~  265 (751)
                                            +....+|...|..++|+|....+|++++.|-++||||......            ++.
T Consensus       227 ----------------------l~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds------------~~e  272 (311)
T KOG0277|consen  227 ----------------------LFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDS------------AIE  272 (311)
T ss_pred             ----------------------ceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchh------------hhh
Confidence                                  3334558899999999998888999999999999999875431            122


Q ss_pred             cccccccccCCccccceEEEEEcC-CCCEEEEEeCCCcEEEEEC
Q 004468          266 YFCPMHLSEHGRSSLHLTHVTFSP-NGEEVLLSYSGEHVYLMDV  308 (751)
Q Consensus       266 ~~~~~~~~~~g~~~~~vt~v~fsp-dg~~Ll~~s~d~~I~lwdl  308 (751)
                      .+       ..|+. -|..+.||+ ++.+++..+-|+.++||+.
T Consensus       273 ~~-------~~HtE-Fv~g~Dws~~~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  273 TV-------DHHTE-FVCGLDWSLFDPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             hh-------hccce-EEeccccccccCceeeecccccceeeecc
Confidence            21       12333 488999998 5678888888999999984

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.94  E-value=2.8e-24  Score=256.74  Aligned_cols=188  Identities=15%  Similarity=0.235  Sum_probs=142.1

Q ss_pred             CCcEEEEeCCCCeEEEEec----ccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeeccc
Q 004468           71 DTHINVWSYSSRKLLHSIE----TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCH  146 (751)
Q Consensus        71 Dg~I~IWd~~~~~~~~~l~----~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h  146 (751)
                      +|.+++|+..+......+.    ..|.+.|.+++|+|+  +++|+||+.|++|+||++........  ....+...+. +
T Consensus       457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~d--g~~latgg~D~~I~iwd~~~~~~~~~--~~~~~~~~~~-~  531 (793)
T PLN00181        457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRD--GEFFATAGVNKKIKIFECESIIKDGR--DIHYPVVELA-S  531 (793)
T ss_pred             hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCC--CCEEEEEeCCCEEEEEECCccccccc--ccccceEEec-c
Confidence            6789999988665544432    348999999999999  89999999999999999864210000  0001233333 4


Q ss_pred             CCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCC
Q 004468          147 TRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISST  226 (751)
Q Consensus       147 ~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~  226 (751)
                      ...|.+++|+|..+.+|++++.||+|++||+.+++..                         .....|...|++++|+|.
T Consensus       532 ~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~-------------------------~~~~~H~~~V~~l~~~p~  586 (793)
T PLN00181        532 RSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLV-------------------------TEMKEHEKRVWSIDYSSA  586 (793)
T ss_pred             cCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEE-------------------------EEecCCCCCEEEEEEcCC
Confidence            5679999999877789999999999999999876421                         112347788999999986


Q ss_pred             CCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEc-CCCCEEEEEeCCCcEEE
Q 004468          227 RPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFS-PNGEEVLLSYSGEHVYL  305 (751)
Q Consensus       227 ~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fs-pdg~~Ll~~s~d~~I~l  305 (751)
                      ++.+|++|+.|+.|++||+++...+..+                    ..+  ..|+++.|+ ++|.+|++|+.|+.|++
T Consensus       587 ~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~--------------------~~~--~~v~~v~~~~~~g~~latgs~dg~I~i  644 (793)
T PLN00181        587 DPTLLASGSDDGSVKLWSINQGVSIGTI--------------------KTK--ANICCVQFPSESGRSLAFGSADHKVYY  644 (793)
T ss_pred             CCCEEEEEcCCCEEEEEECCCCcEEEEE--------------------ecC--CCeEEEEEeCCCCCEEEEEeCCCeEEE
Confidence            7889999999999999999876433221                    111  148899995 57999999999999999


Q ss_pred             EECCC
Q 004468          306 MDVNH  310 (751)
Q Consensus       306 wdl~~  310 (751)
                      ||+.+
T Consensus       645 wD~~~  649 (793)
T PLN00181        645 YDLRN  649 (793)
T ss_pred             EECCC
Confidence            99876

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.93  E-value=4.4e-24  Score=231.68  Aligned_cols=247  Identities=15%  Similarity=0.187  Sum_probs=185.9

Q ss_pred             ccccccEEeccCCCcEEEEEECCCCC-EEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECC
Q 004468           38 RRLSQERELEGHQGCVNAISWNSKGS-LLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD  116 (751)
Q Consensus        38 ~~~~~~~~L~gH~~~V~~l~~s~dg~-~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~D  116 (751)
                      +.-+.+.+++.-.+.|+.++|..||+ +||+|+..|.+.+||++..+.+..+...|.+.|..+.|.|.  ...++|++.|
T Consensus       232 K~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~--epVl~ta~~D  309 (910)
T KOG1539|consen  232 KFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPG--EPVLVTAGAD  309 (910)
T ss_pred             ccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCC--CceEeeccCC
Confidence            33455667775569999999999997 77788888999999999998888887799999999999999  6899999999


Q ss_pred             CcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCC-----------
Q 004468          117 AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPP-----------  185 (751)
Q Consensus       117 g~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~-----------  185 (751)
                      ..+++|=.+++.+..      +.++.-.||..+..+|.|.-..++.+.+++.|++++.+++........           
T Consensus       310 nSlk~~vfD~~dg~p------R~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~k  383 (910)
T KOG1539|consen  310 NSLKVWVFDSGDGVP------RLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAK  383 (910)
T ss_pred             CceeEEEeeCCCCcc------hheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccc
Confidence            999999888766543      557777899999999999876889999999999999998764321100           


Q ss_pred             -CCCC-------------------C-----------CccceEEEecccCceecccCCC----CCccceEEEEEeCCCCcE
Q 004468          186 -AGSS-------------------H-----------QECRNILLDLRCGAKRSLADPP----KQTLSLKSCDISSTRPHL  230 (751)
Q Consensus       186 -~~~~-------------------~-----------~~~~~~l~~~~~~~~~~~~~~~----~~~~~v~~i~~sp~~~~~  230 (751)
                       ....                   .           .......|+++..........+    +....++++++++ .|++
T Consensus       384 k~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~-CGNF  462 (910)
T KOG1539|consen  384 KVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSF-CGNF  462 (910)
T ss_pred             cccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEec-cCce
Confidence             0000                   0           0011123343332221111111    2456789999999 5899


Q ss_pred             EEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004468          231 LLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (751)
Q Consensus       231 l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~  310 (751)
                      .+.|...|.|-+|++.++-...++..           .      ..|. .+|++++...-++.+++++.+|.+.+||+.+
T Consensus       463 ~~IG~S~G~Id~fNmQSGi~r~sf~~-----------~------~ah~-~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~  524 (910)
T KOG1539|consen  463 VFIGYSKGTIDRFNMQSGIHRKSFGD-----------S------PAHK-GEVTGLAVDGTNRLLVSAGADGILKFWDFKK  524 (910)
T ss_pred             EEEeccCCeEEEEEcccCeeeccccc-----------C------cccc-CceeEEEecCCCceEEEccCcceEEEEecCC
Confidence            99999999999999998754433310           0      1232 3699999999999999999999999999998


Q ss_pred             C
Q 004468          311 A  311 (751)
Q Consensus       311 ~  311 (751)
                      .
T Consensus       525 k  525 (910)
T KOG1539|consen  525 K  525 (910)
T ss_pred             c
Confidence            4

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=4.4e-25  Score=232.00  Aligned_cols=253  Identities=15%  Similarity=0.214  Sum_probs=211.1

Q ss_pred             cccccccchhhhccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCC
Q 004468           26 VNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPET  105 (751)
Q Consensus        26 ~~~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s  105 (751)
                      +...+++|....+.  .++.++--.-+|.+..|-+-.+.+++|++|..|+||++.++..++.| ..|.+.|.|++.+|. 
T Consensus        33 ynG~V~IWnyetqt--mVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~F-eAH~DyIR~iavHPt-  108 (794)
T KOG0276|consen   33 YNGDVQIWNYETQT--MVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTF-EAHSDYIRSIAVHPT-  108 (794)
T ss_pred             ecCeeEEEecccce--eeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEEe-eccccceeeeeecCC-
Confidence            57888998865554  57777777889999999999999999999999999999999999999 899999999999999 


Q ss_pred             CCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCC
Q 004468          106 SDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPP  185 (751)
Q Consensus       106 ~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~  185 (751)
                       ..+++|+|.|-+|++||.+..         ..+.+++.+|+..|.+++|+|.+.+.|+|++.|+||++|.+.++.+   
T Consensus       109 -~P~vLtsSDDm~iKlW~we~~---------wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~---  175 (794)
T KOG0276|consen  109 -LPYVLTSSDDMTIKLWDWENE---------WACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHP---  175 (794)
T ss_pred             -CCeEEecCCccEEEEeeccCc---------eeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCC---
Confidence             799999999999999999853         4678999999999999999999999999999999999999987653   


Q ss_pred             CCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCC-CcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCcc
Q 004468          186 AGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR-PHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCV  264 (751)
Q Consensus       186 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~-~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~  264 (751)
                                            ..+..+|...|+|+++-+.+ .-+|++|+.|.+|+|||..+.+             |+
T Consensus       176 ----------------------nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~-------------CV  220 (794)
T KOG0276|consen  176 ----------------------NFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKS-------------CV  220 (794)
T ss_pred             ----------------------ceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHH-------------HH
Confidence                                  22334588899999998742 2499999999999999998764             55


Q ss_pred             ccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcceeeeecCCCceeEEeCCCCCCccc
Q 004468          265 NYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLEL  338 (751)
Q Consensus       265 ~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~  338 (751)
                      +.+       .||.+ .|..+.|+|.-..+++|+.||+|+||+-.+-+.....-...+.+..++..+..+.++.
T Consensus       221 ~TL-------eGHt~-Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~v  286 (794)
T KOG0276|consen  221 QTL-------EGHTN-NVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAV  286 (794)
T ss_pred             HHh-------hcccc-cceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEE
Confidence            555       56766 5999999999999999999999999998886544444333444444454455444433

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.93  E-value=4e-24  Score=237.39  Aligned_cols=199  Identities=22%  Similarity=0.353  Sum_probs=169.7

Q ss_pred             EEecc-CCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEE-ecccCCcceEEEEEecCCCCcEEEEEECCCcEEE
Q 004468           44 RELEG-HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHS-IETGHSANVFCTKFVPETSDELVVSGAGDAEVRL  121 (751)
Q Consensus        44 ~~L~g-H~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~-l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~v  121 (751)
                      +.+.+ |...|.+..|.  +.++++++.|.+|++||..++..+.. + .||.+.|.+++|...  +.++++|+.|.+++|
T Consensus       201 ~~~~~~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l-~GH~g~V~~l~~~~~--~~~lvsgS~D~t~rv  275 (537)
T KOG0274|consen  201 KVLLGTDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRL-VGHFGGVWGLAFPSG--GDKLVSGSTDKTERV  275 (537)
T ss_pred             eeecccCcchhhhheee--cCeEEecCCCceeEEeecccceEEEeec-cCCCCCceeEEEecC--CCEEEEEecCCcEEe
Confidence            34444 56789999998  66899999999999999999999888 6 899999999999975  789999999999999


Q ss_pred             EECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecc
Q 004468          122 FNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLR  201 (751)
Q Consensus       122 wd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~  201 (751)
                      ||..++          .+.+++.+|...|.++...   +..+++|+.|.+|++|++.++..+                  
T Consensus       276 Wd~~sg----------~C~~~l~gh~stv~~~~~~---~~~~~sgs~D~tVkVW~v~n~~~l------------------  324 (537)
T KOG0274|consen  276 WDCSTG----------ECTHSLQGHTSSVRCLTID---PFLLVSGSRDNTVKVWDVTNGACL------------------  324 (537)
T ss_pred             EecCCC----------cEEEEecCCCceEEEEEcc---CceEeeccCCceEEEEeccCcceE------------------
Confidence            998865          6699999999999999874   468889999999999999977532                  


Q ss_pred             cCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccc
Q 004468          202 CGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLH  281 (751)
Q Consensus       202 ~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  281 (751)
                             ....+|..+|+++.++   +.++++|+.|++|++||+++++.++++                    .||.. +
T Consensus       325 -------~l~~~h~~~V~~v~~~---~~~lvsgs~d~~v~VW~~~~~~cl~sl--------------------~gH~~-~  373 (537)
T KOG0274|consen  325 -------NLLRGHTGPVNCVQLD---EPLLVSGSYDGTVKVWDPRTGKCLKSL--------------------SGHTG-R  373 (537)
T ss_pred             -------EEeccccccEEEEEec---CCEEEEEecCceEEEEEhhhceeeeee--------------------cCCcc-e
Confidence                   1122377899999997   469999999999999999987755443                    45655 6


Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004468          282 LTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (751)
Q Consensus       282 vt~v~fspdg~~Ll~~s~d~~I~lwdl~~  310 (751)
                      |+++.+.+. .++++|+.|+.|++||+.+
T Consensus       374 V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~  401 (537)
T KOG0274|consen  374 VYSLIVDSE-NRLLSGSLDTTIKVWDLRT  401 (537)
T ss_pred             EEEEEecCc-ceEEeeeeccceEeecCCc
Confidence            999988877 8999999999999999988

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.93  E-value=1.5e-24  Score=214.52  Aligned_cols=256  Identities=16%  Similarity=0.332  Sum_probs=200.8

Q ss_pred             cccccccccchhhhccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEec
Q 004468           24 PDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP  103 (751)
Q Consensus        24 ~~~~~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp  103 (751)
                      ...++.+++|+  +.+.++..+|.||...|..+++|+--.||.+++.|+.|+-||++..+.+..+ .||-..|.|++.+|
T Consensus       169 gs~DrtikIwD--latg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~Y-hGHlS~V~~L~lhP  245 (460)
T KOG0285|consen  169 GSADRTIKIWD--LATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHY-HGHLSGVYCLDLHP  245 (460)
T ss_pred             cCCCceeEEEE--cccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHh-ccccceeEEEeccc
Confidence            34678889988  4556677899999999999999999999999999999999999999999988 79999999999999


Q ss_pred             CCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCC
Q 004468          104 ETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSC  183 (751)
Q Consensus       104 ~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~  183 (751)
                      .  .+.|+||+.|.++||||+++.          ..+.++.+|+.+|.++.+.|.++. +++||.|++|++||++.++..
T Consensus       246 T--ldvl~t~grDst~RvWDiRtr----------~~V~~l~GH~~~V~~V~~~~~dpq-vit~S~D~tvrlWDl~agkt~  312 (460)
T KOG0285|consen  246 T--LDVLVTGGRDSTIRVWDIRTR----------ASVHVLSGHTNPVASVMCQPTDPQ-VITGSHDSTVRLWDLRAGKTM  312 (460)
T ss_pred             c--ceeEEecCCcceEEEeeeccc----------ceEEEecCCCCcceeEEeecCCCc-eEEecCCceEEEeeeccCcee
Confidence            9  799999999999999999975          558999999999999999998865 559999999999999998754


Q ss_pred             CCCCCCCCccc----------------eEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCC
Q 004468          184 PPAGSSHQECR----------------NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM  247 (751)
Q Consensus       184 ~~~~~~~~~~~----------------~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~  247 (751)
                      ..........+                ..+....-.....+....+|..-+++++.+.+  .++++|+..|.|.+||.++
T Consensus       313 ~tlt~hkksvral~lhP~e~~fASas~dnik~w~~p~g~f~~nlsgh~~iintl~~nsD--~v~~~G~dng~~~fwdwks  390 (460)
T KOG0285|consen  313 ITLTHHKKSVRALCLHPKENLFASASPDNIKQWKLPEGEFLQNLSGHNAIINTLSVNSD--GVLVSGGDNGSIMFWDWKS  390 (460)
T ss_pred             EeeecccceeeEEecCCchhhhhccCCccceeccCCccchhhccccccceeeeeeeccC--ceEEEcCCceEEEEEecCc
Confidence            32221111111                11111111112223334567788999999985  5999999999999999998


Q ss_pred             CCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004468          248 LPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (751)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~  310 (751)
                      +......+....         |+.+..    ...|++.+|...|..|+++..|.+|++|.-+.
T Consensus       391 g~nyQ~~~t~vq---------pGSl~s----EagI~as~fDktg~rlit~eadKtIk~~keDe  440 (460)
T KOG0285|consen  391 GHNYQRGQTIVQ---------PGSLES----EAGIFASCFDKTGSRLITGEADKTIKMYKEDE  440 (460)
T ss_pred             Cccccccccccc---------CCcccc----ccceeEEeecccCceEEeccCCcceEEEeccc
Confidence            765443322211         222211    12489999999999999999999999997554

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.93  E-value=1e-24  Score=211.76  Aligned_cols=263  Identities=18%  Similarity=0.256  Sum_probs=206.3

Q ss_pred             ccccccccchhhhccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecC
Q 004468           25 DVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPE  104 (751)
Q Consensus        25 ~~~~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~  104 (751)
                      .+++.+-+|.-+ ...+-..+++||++.|..+.|++|++.|+|+|.|++|+.||+++|+++..+ ++|..-|+++.-+.-
T Consensus        66 G~Dr~I~LWnv~-gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~-k~h~~~vNs~~p~rr  143 (338)
T KOG0265|consen   66 GSDRAIVLWNVY-GDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKH-KGHTSFVNSLDPSRR  143 (338)
T ss_pred             CCcceEEEEecc-ccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehh-ccccceeeecCcccc
Confidence            466777777633 222344677899999999999999999999999999999999999999999 899999999984433


Q ss_pred             CCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCC
Q 004468          105 TSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCP  184 (751)
Q Consensus       105 s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~  184 (751)
                       +..++.||+.|++++|||++..          .+++++. ..-.++++.|.. .+..+.+|+-|+.|++||+|.+... 
T Consensus       144 -g~~lv~SgsdD~t~kl~D~R~k----------~~~~t~~-~kyqltAv~f~d-~s~qv~sggIdn~ikvWd~r~~d~~-  209 (338)
T KOG0265|consen  144 -GPQLVCSGSDDGTLKLWDIRKK----------EAIKTFE-NKYQLTAVGFKD-TSDQVISGGIDNDIKVWDLRKNDGL-  209 (338)
T ss_pred             -CCeEEEecCCCceEEEEeeccc----------chhhccc-cceeEEEEEecc-cccceeeccccCceeeeccccCcce-
Confidence             2467789999999999999964          4455554 355689999987 5567779999999999999987632 


Q ss_pred             CCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCcc
Q 004468          185 PAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCV  264 (751)
Q Consensus       185 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~  264 (751)
                                              ....+|...|+.+..+|. +.++++-+.|.+|++||+|-..+.         .+|+
T Consensus       210 ------------------------~~lsGh~DtIt~lsls~~-gs~llsnsMd~tvrvwd~rp~~p~---------~R~v  255 (338)
T KOG0265|consen  210 ------------------------YTLSGHADTITGLSLSRY-GSFLLSNSMDNTVRVWDVRPFAPS---------QRCV  255 (338)
T ss_pred             ------------------------EEeecccCceeeEEeccC-CCccccccccceEEEEEecccCCC---------CceE
Confidence                                    223458889999999995 799999999999999999865432         2455


Q ss_pred             ccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcceeeeecCCCceeEEeCCCCCCcccCCC
Q 004468          265 NYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPP  341 (751)
Q Consensus       265 ~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~  341 (751)
                      +.|......- .+   ....++|+|+++.+-+|+.|..+|+||.........+.++...++.+.|+|.-.-+.....
T Consensus       256 ~if~g~~hnf-ek---nlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~s  328 (338)
T KOG0265|consen  256 KIFQGHIHNF-EK---NLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSS  328 (338)
T ss_pred             EEeecchhhh-hh---hcceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEecc
Confidence            5553221111 11   2567899999999999999999999999986666666777788899999998665544433

>PTZ00420 coronin; Provisional

Probab=99.93  E-value=8.3e-24  Score=235.62  Aligned_cols=236  Identities=14%  Similarity=0.189  Sum_probs=170.2

Q ss_pred             ccccEEeccCCCcEEEEEECCC-CCEEEEEeCCCcEEEEeCCCCe--------EEEEecccCCcceEEEEEecCCCCcEE
Q 004468           40 LSQERELEGHQGCVNAISWNSK-GSLLISGSDDTHINVWSYSSRK--------LLHSIETGHSANVFCTKFVPETSDELV  110 (751)
Q Consensus        40 ~~~~~~L~gH~~~V~~l~~s~d-g~~LaSgs~Dg~I~IWd~~~~~--------~~~~l~~~h~~~V~~v~fsp~s~~~~l  110 (751)
                      ..++..|.+|.+.|++++|+|+ +.+||||+.|++|+|||+.++.        .+..+ .+|...|.+++|+|+. ..+|
T Consensus        64 ~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L-~gH~~~V~sVaf~P~g-~~iL  141 (568)
T PTZ00420         64 KPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCIL-KGHKKKISIIDWNPMN-YYIM  141 (568)
T ss_pred             CceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEe-ecCCCcEEEEEECCCC-CeEE
Confidence            4567889999999999999996 7899999999999999987542        23345 7899999999999983 3456


Q ss_pred             EEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCC
Q 004468          111 VSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSH  190 (751)
Q Consensus       111 ~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~  190 (751)
                      +||+.|++|+|||+..+          ..+..+. |...|.+++|+| ++.+|++++.|++|++||+++++.+.      
T Consensus       142 aSgS~DgtIrIWDl~tg----------~~~~~i~-~~~~V~Slswsp-dG~lLat~s~D~~IrIwD~Rsg~~i~------  203 (568)
T PTZ00420        142 CSSGFDSFVNIWDIENE----------KRAFQIN-MPKKLSSLKWNI-KGNLLSGTCVGKHMHIIDPRKQEIAS------  203 (568)
T ss_pred             EEEeCCCeEEEEECCCC----------cEEEEEe-cCCcEEEEEECC-CCCEEEEEecCCEEEEEECCCCcEEE------
Confidence            89999999999999864          2244444 667899999999 67899999999999999999876321      


Q ss_pred             CccceEEEecccCceecccCCCCCcc-----ceEEEEEeCCCCcEEEEEeCCC----eEEEEeCCCC-CCccccCCCCCC
Q 004468          191 QECRNILLDLRCGAKRSLADPPKQTL-----SLKSCDISSTRPHLLLVGGSDA----FARLYDRRML-PPLTSCQKRMSP  260 (751)
Q Consensus       191 ~~~~~~l~~~~~~~~~~~~~~~~~~~-----~v~~i~~sp~~~~~l~sgs~D~----~IriwD~~~~-~~~~~~~~~~~~  260 (751)
                           .+              ..|..     .+....|+++ +.+|++++.|+    .|+|||++.. +++....     
T Consensus       204 -----tl--------------~gH~g~~~s~~v~~~~fs~d-~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~-----  258 (568)
T PTZ00420        204 -----SF--------------HIHDGGKNTKNIWIDGLGGD-DNYILSTGFSKNNMREMKLWDLKNTTSALVTMS-----  258 (568)
T ss_pred             -----EE--------------ecccCCceeEEEEeeeEcCC-CCEEEEEEcCCCCccEEEEEECCCCCCceEEEE-----
Confidence                 00              11222     2333456674 67888877664    7999999963 2222110     


Q ss_pred             CCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcce-eeeecCCCceeEEeCCCCC
Q 004468          261 PPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRA-MRYTVGDASKIMSFTPTLN  334 (751)
Q Consensus       261 ~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~-~~~~~~~~~~~~~~sp~~~  334 (751)
                                 +  ..+ ...+......++|.++++|++|+.|++|++..+.... ..+....+.+.++|.|...
T Consensus       259 -----------l--d~~-~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~l~~~~s~~p~~g~~f~Pkr~  319 (568)
T PTZ00420        259 -----------I--DNA-SAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSIRKVNEYKSCSPFRSFGFLPKQI  319 (568)
T ss_pred             -----------e--cCC-ccceEEeeeCCCCCEEEEEECCCeEEEEEccCCcEEeecccccCCCccceEEccccc
Confidence                       0  011 1124444456678999999999999999998753211 1233456677888888643

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.93  E-value=4.3e-24  Score=239.28  Aligned_cols=241  Identities=16%  Similarity=0.221  Sum_probs=181.1

Q ss_pred             eccCC-CcEEEEEECCCCCEEEEEe--CCCcEEEEeCCC------------CeEEEEecccCCcceEEEEEecCCCCcEE
Q 004468           46 LEGHQ-GCVNAISWNSKGSLLISGS--DDTHINVWSYSS------------RKLLHSIETGHSANVFCTKFVPETSDELV  110 (751)
Q Consensus        46 L~gH~-~~V~~l~~s~dg~~LaSgs--~Dg~I~IWd~~~------------~~~~~~l~~~h~~~V~~v~fsp~s~~~~l  110 (751)
                      +-+|. ..|..+..+|+|..+|||+  .|+.++||+...            .+.+.+. ..|.+.|+|+.|+|+  |++|
T Consensus         8 wv~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m-~~h~~sv~CVR~S~d--G~~l   84 (942)
T KOG0973|consen    8 WVNHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTM-DDHDGSVNCVRFSPD--GSYL   84 (942)
T ss_pred             ccccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheee-ccccCceeEEEECCC--CCeE
Confidence            34454 4689999999999999999  999999998642            2334445 689999999999999  8999


Q ss_pred             EEEECCCcEEEEECCC-CCC-------CCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCC
Q 004468          111 VSGAGDAEVRLFNLSR-FSG-------RGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSS  182 (751)
Q Consensus       111 ~sgs~Dg~V~vwd~~~-~~~-------~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~  182 (751)
                      |+|+.|+.|.||.... +.+       .......++.+..+.+|...|..++|+| ++.+|+|+|.|++|.|||.++.+.
T Consensus        85 AsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp-~~~~lvS~s~DnsViiwn~~tF~~  163 (942)
T KOG0973|consen   85 ASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP-DDSLLVSVSLDNSVIIWNAKTFEL  163 (942)
T ss_pred             eeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC-CccEEEEecccceEEEEcccccee
Confidence            9999999999999883 111       1112233567888999999999999999 779999999999999999998742


Q ss_pred             CCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCC
Q 004468          183 CPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPP  262 (751)
Q Consensus       183 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~  262 (751)
                                               +....+|...|..+.|.|. ++||++-+.|++|+||++.+....+.+...     
T Consensus       164 -------------------------~~vl~~H~s~VKGvs~DP~-Gky~ASqsdDrtikvwrt~dw~i~k~It~p-----  212 (942)
T KOG0973|consen  164 -------------------------LKVLRGHQSLVKGVSWDPI-GKYFASQSDDRTLKVWRTSDWGIEKSITKP-----  212 (942)
T ss_pred             -------------------------eeeeecccccccceEECCc-cCeeeeecCCceEEEEEcccceeeEeeccc-----
Confidence                                     2333458889999999996 899999999999999997664333222111     


Q ss_pred             ccccccccccccCCccccceEEEEEcCCCCEEEEEeC----CCcEEEEECCCCCcceeeeecCCCceeEEeCC
Q 004468          263 CVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS----GEHVYLMDVNHAGGRAMRYTVGDASKIMSFTP  331 (751)
Q Consensus       263 ~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~----d~~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp  331 (751)
                          |     ...+-.. .+..+.|||||.+|++...    ..++.|.+-.+.+...-+.+|..+..++.|+|
T Consensus       213 ----f-----~~~~~~T-~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP  275 (942)
T KOG0973|consen  213 ----F-----EESPLTT-FFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNP  275 (942)
T ss_pred             ----h-----hhCCCcc-eeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeCh
Confidence                1     0001111 4788999999999987643    34677777666555555666666666666666

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.92  E-value=8.8e-24  Score=210.14  Aligned_cols=226  Identities=14%  Similarity=0.162  Sum_probs=174.9

Q ss_pred             hccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECC
Q 004468           37 VRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD  116 (751)
Q Consensus        37 i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~D  116 (751)
                      +.+.....+|.||++.|.|+.||.+|.+||||+.+|.|+||...++.....+ ..--..|.=++|+|.  +.+|+.|+.|
T Consensus        93 ~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~-~~e~~dieWl~WHp~--a~illAG~~D  169 (399)
T KOG0296|consen   93 ISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKL-DQEVEDIEWLKWHPR--AHILLAGSTD  169 (399)
T ss_pred             ccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEe-ecccCceEEEEeccc--ccEEEeecCC
Confidence            3444578899999999999999999999999999999999999999988888 455677888999998  8999999999


Q ss_pred             CcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceE
Q 004468          117 AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNI  196 (751)
Q Consensus       117 g~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~  196 (751)
                      |.|-+|.+...          ...+.+.+|+.++++=.|.| +++.++++..||+|++||+.++++......        
T Consensus       170 GsvWmw~ip~~----------~~~kv~~Gh~~~ct~G~f~p-dGKr~~tgy~dgti~~Wn~ktg~p~~~~~~--------  230 (399)
T KOG0296|consen  170 GSVWMWQIPSQ----------ALCKVMSGHNSPCTCGEFIP-DGKRILTGYDDGTIIVWNPKTGQPLHKITQ--------  230 (399)
T ss_pred             CcEEEEECCCc----------ceeeEecCCCCCcccccccC-CCceEEEEecCceEEEEecCCCceeEEecc--------
Confidence            99999999863          33688999999999999999 578899999999999999999874311100        


Q ss_pred             EEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCC
Q 004468          197 LLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHG  276 (751)
Q Consensus       197 l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  276 (751)
                                      ......+++.++. .+..++.|+.++.+++-...+++.+.....          -.|......-
T Consensus       231 ----------------~e~~~~~~~~~~~-~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~----------~~~~l~~~~e  283 (399)
T KOG0296|consen  231 ----------------AEGLELPCISLNL-AGSTLTKGNSEGVACGVNNGSGKVVNCNNG----------TVPELKPSQE  283 (399)
T ss_pred             ----------------cccCcCCcccccc-ccceeEeccCCccEEEEccccceEEEecCC----------CCccccccch
Confidence                            0134567788888 478999999999999988887764432211          0010011111


Q ss_pred             ccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 004468          277 RSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (751)
Q Consensus       277 ~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~  311 (751)
                      +....|-++.|+..=...++|+-||+|.|||+...
T Consensus       284 ~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~  318 (399)
T KOG0296|consen  284 ELDESVESIPSSSKLPLAACGSVDGTIAIYDLAAS  318 (399)
T ss_pred             hhhhhhhhcccccccchhhcccccceEEEEecccc
Confidence            11112455555556677889999999999999884

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.92  E-value=4.5e-25  Score=208.56  Aligned_cols=209  Identities=21%  Similarity=0.306  Sum_probs=176.0

Q ss_pred             cccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCc
Q 004468           39 RLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAE  118 (751)
Q Consensus        39 ~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~  118 (751)
                      +..-+-++.||++.|+....+.+..+-||++.|-+.+|||.-+|..++.+  .|+.-|..++|+.+  .++|+||+.+..
T Consensus        48 tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf--~hkhivk~~af~~d--s~~lltgg~ekl  123 (334)
T KOG0278|consen   48 TGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSF--EHKHIVKAVAFSQD--SNYLLTGGQEKL  123 (334)
T ss_pred             CCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhh--hhhheeeeEEeccc--chhhhccchHHH
Confidence            44557789999999999999999999999999999999999999999998  58888999999999  589999999999


Q ss_pred             EEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEE
Q 004468          119 VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILL  198 (751)
Q Consensus       119 V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~  198 (751)
                      +||||++...         .+...+.+|++.|+.+-|.. ..+.|+|.+.|++||+||.|++....           .+.
T Consensus       124 lrvfdln~p~---------App~E~~ghtg~Ir~v~wc~-eD~~iLSSadd~tVRLWD~rTgt~v~-----------sL~  182 (334)
T KOG0278|consen  124 LRVFDLNRPK---------APPKEISGHTGGIRTVLWCH-EDKCILSSADDKTVRLWDHRTGTEVQ-----------SLE  182 (334)
T ss_pred             hhhhhccCCC---------CCchhhcCCCCcceeEEEec-cCceEEeeccCCceEEEEeccCcEEE-----------EEe
Confidence            9999999753         45778899999999999998 44778888999999999999987431           110


Q ss_pred             ecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCcc
Q 004468          199 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRS  278 (751)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  278 (751)
                                     ....|+++.++++ +++ ++-...+.|++||..+...+.++..                      
T Consensus       183 ---------------~~s~VtSlEvs~d-G~i-lTia~gssV~Fwdaksf~~lKs~k~----------------------  223 (334)
T KOG0278|consen  183 ---------------FNSPVTSLEVSQD-GRI-LTIAYGSSVKFWDAKSFGLLKSYKM----------------------  223 (334)
T ss_pred             ---------------cCCCCcceeeccC-CCE-EEEecCceeEEeccccccceeeccC----------------------
Confidence                           2457899999995 554 4556678899999998876654321                      


Q ss_pred             ccceEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 004468          279 SLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (751)
Q Consensus       279 ~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~  311 (751)
                      ...|.+..++|+...+++|+.|..++.||..++
T Consensus       224 P~nV~SASL~P~k~~fVaGged~~~~kfDy~Tg  256 (334)
T KOG0278|consen  224 PCNVESASLHPKKEFFVAGGEDFKVYKFDYNTG  256 (334)
T ss_pred             ccccccccccCCCceEEecCcceEEEEEeccCC
Confidence            124899999999999999999999999998884

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=1.9e-22  Score=187.84  Aligned_cols=222  Identities=17%  Similarity=0.309  Sum_probs=158.9

Q ss_pred             cccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCC------C--------eEEEEecccCCcceEEEEEecC
Q 004468           39 RLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSS------R--------KLLHSIETGHSANVFCTKFVPE  104 (751)
Q Consensus        39 ~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~------~--------~~~~~l~~~h~~~V~~v~fsp~  104 (751)
                      .+..+.+|+ .+..|.+++|+|.|.+.|.||..++++|--+..      +        ..+..-.+.|++.|.|++|+|+
T Consensus        22 ~f~~i~~l~-dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~  100 (350)
T KOG0641|consen   22 HFEAINILE-DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPC  100 (350)
T ss_pred             ceEEEEEec-chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCc
Confidence            344555665 467899999999999999999999999975421      1        1222223578999999999999


Q ss_pred             CCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEec---CCCCEEEEEe-CCCcEEEEecCCC
Q 004468          105 TSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEV---GNPHVVWSAS-EDGTLRQHDFRQG  180 (751)
Q Consensus       105 s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp---~~~~~l~s~s-~Dg~I~iwDlr~~  180 (751)
                        |++|++|+.|.+|++.-+...+....     .+-..+.-|.+.|..++|-.   .++.+|++++ .|..|++-|...+
T Consensus       101 --geliatgsndk~ik~l~fn~dt~~~~-----g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g  173 (350)
T KOG0641|consen  101 --GELIATGSNDKTIKVLPFNADTCNAT-----GHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRG  173 (350)
T ss_pred             --cCeEEecCCCceEEEEeccccccccc-----CcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCC
Confidence              89999999999999987765332221     33456788999999999964   2456777765 4666666666665


Q ss_pred             CCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEE-EEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCC
Q 004468          181 SSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSC-DISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMS  259 (751)
Q Consensus       181 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i-~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~  259 (751)
                      +..                         ....+|...|.++ .|+   +-++++|+.|.+||+||+|-...+..+...  
T Consensus       174 ~~~-------------------------~a~sghtghilalyswn---~~m~~sgsqdktirfwdlrv~~~v~~l~~~--  223 (350)
T KOG0641|consen  174 QGF-------------------------HALSGHTGHILALYSWN---GAMFASGSQDKTIRFWDLRVNSCVNTLDND--  223 (350)
T ss_pred             Ccc-------------------------eeecCCcccEEEEEEec---CcEEEccCCCceEEEEeeeccceeeeccCc--
Confidence            532                         1222344445444 343   579999999999999999976544333211  


Q ss_pred             CCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004468          260 PPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (751)
Q Consensus       260 ~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~  310 (751)
                                  ....|-.+..|++++..|.|+.|++|-.|....+||++.
T Consensus       224 ------------~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg  262 (350)
T KOG0641|consen  224 ------------FHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRG  262 (350)
T ss_pred             ------------ccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeC
Confidence                        111233345799999999999999999998888888776

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=1.4e-23  Score=201.20  Aligned_cols=229  Identities=17%  Similarity=0.269  Sum_probs=185.9

Q ss_pred             cccccccccchhhhccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCC---eEEEEecccCCcceEEEE
Q 004468           24 PDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSR---KLLHSIETGHSANVFCTK  100 (751)
Q Consensus        24 ~~~~~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~---~~~~~l~~~h~~~V~~v~  100 (751)
                      ..|+-...+|...-..++++.+|+||..+|.|++|+++|++||+||.|+.|-||.+..+   .++..+ ++|+.-|--+.
T Consensus        79 aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL-~~HtqDVK~V~  157 (312)
T KOG0645|consen   79 ASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVL-QEHTQDVKHVI  157 (312)
T ss_pred             eeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeee-ccccccccEEE
Confidence            56889999999999999999999999999999999999999999999999999998733   455556 89999999999


Q ss_pred             EecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCC
Q 004468          101 FVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQG  180 (751)
Q Consensus       101 fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~  180 (751)
                      |+|.  ..+|+|+|.|.+|++|+-...       ....+++++.+|...|.+++|++ .+..+++++.|++|+||-..+.
T Consensus       158 WHPt--~dlL~S~SYDnTIk~~~~~~d-------ddW~c~~tl~g~~~TVW~~~F~~-~G~rl~s~sdD~tv~Iw~~~~~  227 (312)
T KOG0645|consen  158 WHPT--EDLLFSCSYDNTIKVYRDEDD-------DDWECVQTLDGHENTVWSLAFDN-IGSRLVSCSDDGTVSIWRLYTD  227 (312)
T ss_pred             EcCC--cceeEEeccCCeEEEEeecCC-------CCeeEEEEecCccceEEEEEecC-CCceEEEecCCcceEeeeeccC
Confidence            9998  689999999999999988731       22467999999999999999999 6688999999999999987643


Q ss_pred             CCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCC
Q 004468          181 SSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSP  260 (751)
Q Consensus       181 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~  260 (751)
                      -.                             ..|...++.++|.   ...|++++.|+.|+||.......-..       
T Consensus       228 ~~-----------------------------~~~sr~~Y~v~W~---~~~IaS~ggD~~i~lf~~s~~~d~p~-------  268 (312)
T KOG0645|consen  228 LS-----------------------------GMHSRALYDVPWD---NGVIASGGGDDAIRLFKESDSPDEPS-------  268 (312)
T ss_pred             cc-----------------------------hhcccceEeeeec---ccceEeccCCCEEEEEEecCCCCCch-------
Confidence            21                             1155678889998   25899999999999998763211000       


Q ss_pred             CCccccccccccccCCccccceEEEEEcCC-CCEEEEEeCCCcEEEEECC
Q 004468          261 PPCVNYFCPMHLSEHGRSSLHLTHVTFSPN-GEEVLLSYSGEHVYLMDVN  309 (751)
Q Consensus       261 ~~~~~~~~~~~~~~~g~~~~~vt~v~fspd-g~~Ll~~s~d~~I~lwdl~  309 (751)
                         ...+  . .....|.. .|++|.|+|. .++|++++.||.|++|.+.
T Consensus       269 ---~~l~--~-~~~~aHe~-dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  269 ---WNLL--A-KKEGAHEV-DVNSVQWNPKVSNRLASGGDDGIVNFWELE  311 (312)
T ss_pred             ---HHHH--H-hhhccccc-ccceEEEcCCCCCceeecCCCceEEEEEec
Confidence               0000  0 01123444 6999999995 6789999999999999874

>PTZ00421 coronin; Provisional

Probab=99.92  E-value=3.4e-23  Score=229.81  Aligned_cols=211  Identities=15%  Similarity=0.128  Sum_probs=161.3

Q ss_pred             CCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEE-------------EecccCCcceEEEEEecCCCCcEEEEEEC
Q 004468           49 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLH-------------SIETGHSANVFCTKFVPETSDELVVSGAG  115 (751)
Q Consensus        49 H~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~-------------~l~~~h~~~V~~v~fsp~s~~~~l~sgs~  115 (751)
                      |-..|+....++++..+++++.+..+..|+...+..+.             .+ .+|.+.|.+++|+|.. +++|++|+.
T Consensus        19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l-~GH~~~V~~v~fsP~d-~~~LaSgS~   96 (493)
T PTZ00421         19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPIL-LGQEGPIIDVAFNPFD-PQKLFTASE   96 (493)
T ss_pred             ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceE-eCCCCCEEEEEEcCCC-CCEEEEEeC
Confidence            34456667777888888899888888889865443321             23 6899999999999942 689999999


Q ss_pred             CCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccce
Q 004468          116 DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRN  195 (751)
Q Consensus       116 Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~  195 (751)
                      |++|+|||+......   .....++..+.+|...|.+++|+|.+..+|++++.|++|++||+++++..            
T Consensus        97 DgtIkIWdi~~~~~~---~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~------------  161 (493)
T PTZ00421         97 DGTIMGWGIPEEGLT---QNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAV------------  161 (493)
T ss_pred             CCEEEEEecCCCccc---cccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEE------------
Confidence            999999999753110   01124577899999999999999966689999999999999999876421            


Q ss_pred             EEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccC
Q 004468          196 ILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEH  275 (751)
Q Consensus       196 ~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (751)
                                   .....|...|.+++|+| ++.+|++++.|+.|+|||+++.+.+..+                    .
T Consensus       162 -------------~~l~~h~~~V~sla~sp-dG~lLatgs~Dg~IrIwD~rsg~~v~tl--------------------~  207 (493)
T PTZ00421        162 -------------EVIKCHSDQITSLEWNL-DGSLLCTTSKDKKLNIIDPRDGTIVSSV--------------------E  207 (493)
T ss_pred             -------------EEEcCCCCceEEEEEEC-CCCEEEEecCCCEEEEEECCCCcEEEEE--------------------e
Confidence                         11123567899999999 5899999999999999999986543322                    2


Q ss_pred             CccccceEEEEEcCCCCEEEEEe----CCCcEEEEECCC
Q 004468          276 GRSSLHLTHVTFSPNGEEVLLSY----SGEHVYLMDVNH  310 (751)
Q Consensus       276 g~~~~~vt~v~fspdg~~Ll~~s----~d~~I~lwdl~~  310 (751)
                      +|....+..+.|.+++..|++++    .|+.|+|||+.+
T Consensus       208 ~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~  246 (493)
T PTZ00421        208 AHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRK  246 (493)
T ss_pred             cCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCC
Confidence            23332356788999988887764    378999999876

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.92  E-value=1.8e-24  Score=222.15  Aligned_cols=257  Identities=16%  Similarity=0.230  Sum_probs=209.5

Q ss_pred             CcccccccccchhhhccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEe
Q 004468           23 RPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV  102 (751)
Q Consensus        23 ~~~~~~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fs  102 (751)
                      +..++..+++|.-+- ..++++++.||..+|..++|+++|..++|+|-|+.|++||+++|+++..+..+  ..++|++|.
T Consensus       232 S~gmD~~vklW~vy~-~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~--~~~~cvkf~  308 (503)
T KOG0282|consen  232 SGGMDGLVKLWNVYD-DRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLD--KVPTCVKFH  308 (503)
T ss_pred             ecCCCceEEEEEEec-CcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEecC--CCceeeecC
Confidence            356788889998765 66899999999999999999999999999999999999999999999998443  458999999


Q ss_pred             cCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCC
Q 004468          103 PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSS  182 (751)
Q Consensus       103 p~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~  182 (751)
                      |+. .+.|++|+.|+.|+.||++.+          +.++.+..|-+.|..+.|-+ ++..|++.++|++++||+.+.+-.
T Consensus       309 pd~-~n~fl~G~sd~ki~~wDiRs~----------kvvqeYd~hLg~i~~i~F~~-~g~rFissSDdks~riWe~~~~v~  376 (503)
T KOG0282|consen  309 PDN-QNIFLVGGSDKKIRQWDIRSG----------KVVQEYDRHLGAILDITFVD-EGRRFISSSDDKSVRIWENRIPVP  376 (503)
T ss_pred             CCC-CcEEEEecCCCcEEEEeccch----------HHHHHHHhhhhheeeeEEcc-CCceEeeeccCccEEEEEcCCCcc
Confidence            994 489999999999999999975          56889999999999999999 678899999999999999998754


Q ss_pred             CCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCC
Q 004468          183 CPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPP  262 (751)
Q Consensus       183 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~  262 (751)
                      +...                      ..  .......+|..+|. +.+++.-+.|+.|.+|.+...-....         
T Consensus       377 ik~i----------------------~~--~~~hsmP~~~~~P~-~~~~~aQs~dN~i~ifs~~~~~r~nk---------  422 (503)
T KOG0282|consen  377 IKNI----------------------AD--PEMHTMPCLTLHPN-GKWFAAQSMDNYIAIFSTVPPFRLNK---------  422 (503)
T ss_pred             chhh----------------------cc--hhhccCcceecCCC-CCeehhhccCceEEEEecccccccCH---------
Confidence            3111                      00  12345678999995 78999999999999998764322111         


Q ss_pred             ccccccccccccCCcc-ccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcceeeeecCCCceeEEeCCCCCCc
Q 004468          263 CVNYFCPMHLSEHGRS-SLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGL  336 (751)
Q Consensus       263 ~~~~~~~~~~~~~g~~-~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp~~~~~  336 (751)
                       .+.|       .||. .+--+.|.|||||.+|++|.+||.+++||.++.+.......+..+...+.|+|.....
T Consensus       423 -kK~f-------eGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Sk  489 (503)
T KOG0282|consen  423 -KKRF-------EGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSK  489 (503)
T ss_pred             -hhhh-------cceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcce
Confidence             1122       2221 1125679999999999999999999999999977777777777888889999975443

>PTZ00420 coronin; Provisional

Probab=99.92  E-value=1.1e-22  Score=226.54  Aligned_cols=193  Identities=15%  Similarity=0.182  Sum_probs=148.4

Q ss_pred             EEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeeccc
Q 004468           67 SGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCH  146 (751)
Q Consensus        67 Sgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h  146 (751)
                      .|+.++.|+||+......+..+ .+|.+.|.+++|+|+. +.+|+||+.|++|+|||+.......  .....++..+.+|
T Consensus        49 gGG~~gvI~L~~~~r~~~v~~L-~gH~~~V~~lafsP~~-~~lLASgS~DgtIrIWDi~t~~~~~--~~i~~p~~~L~gH  124 (568)
T PTZ00420         49 GGGLIGAIRLENQMRKPPVIKL-KGHTSSILDLQFNPCF-SEILASGSEDLTIRVWEIPHNDESV--KEIKDPQCILKGH  124 (568)
T ss_pred             CCCceeEEEeeecCCCceEEEE-cCCCCCEEEEEEcCCC-CCEEEEEeCCCeEEEEECCCCCccc--cccccceEEeecC
Confidence            3778999999998877777777 8999999999999974 6899999999999999997532100  0001345678899


Q ss_pred             CCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCC
Q 004468          147 TRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISST  226 (751)
Q Consensus       147 ~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~  226 (751)
                      ...|.+++|+|++..+|++++.|++|++||+++++..              ..        +    .+...|.+++|+|+
T Consensus       125 ~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~--------------~~--------i----~~~~~V~Slswspd  178 (568)
T PTZ00420        125 KKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRA--------------FQ--------I----NMPKKLSSLKWNIK  178 (568)
T ss_pred             CCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEE--------------EE--------E----ecCCcEEEEEECCC
Confidence            9999999999966567789999999999999987521              00        0    02346899999994


Q ss_pred             CCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccc----cceEEEEEcCCCCEEEEEeCCC-
Q 004468          227 RPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS----LHLTHVTFSPNGEEVLLSYSGE-  301 (751)
Q Consensus       227 ~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~----~~vt~v~fspdg~~Ll~~s~d~-  301 (751)
                       +.+|++++.|+.|+|||+++++.+..+                    .+|.+    ..+....|++++.+|++++.++ 
T Consensus       179 -G~lLat~s~D~~IrIwD~Rsg~~i~tl--------------------~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~  237 (568)
T PTZ00420        179 -GNLLSGTCVGKHMHIIDPRKQEIASSF--------------------HIHDGGKNTKNIWIDGLGGDDNYILSTGFSKN  237 (568)
T ss_pred             -CCEEEEEecCCEEEEEECCCCcEEEEE--------------------ecccCCceeEEEEeeeEcCCCCEEEEEEcCCC
Confidence             789999999999999999987644322                    12222    1134456779999999988764 


Q ss_pred             ---cEEEEECCC
Q 004468          302 ---HVYLMDVNH  310 (751)
Q Consensus       302 ---~I~lwdl~~  310 (751)
                         +|+|||+.+
T Consensus       238 ~~R~VkLWDlr~  249 (568)
T PTZ00420        238 NMREMKLWDLKN  249 (568)
T ss_pred             CccEEEEEECCC
Confidence               799999887

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=7.9e-24  Score=231.73  Aligned_cols=223  Identities=20%  Similarity=0.292  Sum_probs=178.3

Q ss_pred             hccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECC
Q 004468           37 VRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD  116 (751)
Q Consensus        37 i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~D  116 (751)
                      +=.-+++++|.||.+.|..|.||.+ ++|+|+|.|++|+||++....++..|  .|..-|+||+|+|.. +++|+||+-|
T Consensus       356 ~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F--~HndfVTcVaFnPvD-DryFiSGSLD  431 (712)
T KOG0283|consen  356 VFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVF--SHNDFVTCVAFNPVD-DRYFISGSLD  431 (712)
T ss_pred             cccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEE--ecCCeeEEEEecccC-CCcEeecccc
Confidence            3344789999999999999999965 58999999999999999999999998  699999999999985 8999999999


Q ss_pred             CcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceE
Q 004468          117 AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNI  196 (751)
Q Consensus       117 g~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~  196 (751)
                      +.||||++...           .+..+..-..-|++++|.| +|...+.|+.+|.+++|+++..+...          ..
T Consensus       432 ~KvRiWsI~d~-----------~Vv~W~Dl~~lITAvcy~P-dGk~avIGt~~G~C~fY~t~~lk~~~----------~~  489 (712)
T KOG0283|consen  432 GKVRLWSISDK-----------KVVDWNDLRDLITAVCYSP-DGKGAVIGTFNGYCRFYDTEGLKLVS----------DF  489 (712)
T ss_pred             cceEEeecCcC-----------eeEeehhhhhhheeEEecc-CCceEEEEEeccEEEEEEccCCeEEE----------ee
Confidence            99999999852           2444444558899999999 58999999999999999998765321          11


Q ss_pred             EEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCC
Q 004468          197 LLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHG  276 (751)
Q Consensus       197 l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  276 (751)
                      -+.+..+..      ..+. .|+.+.|.|.++..+++.+.|..|||||.+....+.++.+.                   
T Consensus       490 ~I~~~~~Kk------~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~-------------------  543 (712)
T KOG0283|consen  490 HIRLHNKKK------KQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGF-------------------  543 (712)
T ss_pred             eEeeccCcc------ccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhccc-------------------
Confidence            122222211      1133 79999999988888999999999999999876654443210                   


Q ss_pred             ccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 004468          277 RSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (751)
Q Consensus       277 ~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~  311 (751)
                      +....-....|+.||++|++++.|..||||++...
T Consensus       544 ~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~  578 (712)
T KOG0283|consen  544 RNTSSQISASFSSDGKHIVSASEDSWVYIWKNDSF  578 (712)
T ss_pred             ccCCcceeeeEccCCCEEEEeecCceEEEEeCCCC
Confidence            11112467889999999999999999999998763

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.92  E-value=1.6e-24  Score=218.38  Aligned_cols=264  Identities=22%  Similarity=0.285  Sum_probs=209.4

Q ss_pred             HhhhccCcCcccccccccchhhhccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCc
Q 004468           15 LDTRHTDTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSA   94 (751)
Q Consensus        15 l~~r~~~~~~~~~~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~   94 (751)
                      ++.+..--...+++.+++|.....+...+.+|.|-.+.|+.+.|.++++++++++.|+.+++|++...+..+++ .||++
T Consensus       184 l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TL-sGHtd  262 (459)
T KOG0288|consen  184 LRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTL-SGHTD  262 (459)
T ss_pred             ccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhh-ccccc
Confidence            44444444567889999999999999999999999999999999999999999999999999999999999999 89999


Q ss_pred             ceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEE
Q 004468           95 NVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQ  174 (751)
Q Consensus        95 ~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~i  174 (751)
                      .|+++.|....  ..+++|+.|.+|++||+...  .|        .++.. ....+..|+.+   +..++||-.|++||+
T Consensus       263 kVt~ak~~~~~--~~vVsgs~DRtiK~WDl~k~--~C--------~kt~l-~~S~cnDI~~~---~~~~~SgH~DkkvRf  326 (459)
T KOG0288|consen  263 KVTAAKFKLSH--SRVVSGSADRTIKLWDLQKA--YC--------SKTVL-PGSQCNDIVCS---ISDVISGHFDKKVRF  326 (459)
T ss_pred             ceeeehhhccc--cceeeccccchhhhhhhhhh--he--------ecccc-ccccccceEec---ceeeeecccccceEE
Confidence            99999999883  45999999999999999853  22        33322 23445666664   367889999999999


Q ss_pred             EecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCcccc
Q 004468          175 HDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSC  254 (751)
Q Consensus       175 wDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~  254 (751)
                      ||.|.......                         .+ ....|++++.++ ++..+++++.|.++.+.|+|+......+
T Consensus       327 wD~Rs~~~~~s-------------------------v~-~gg~vtSl~ls~-~g~~lLsssRDdtl~viDlRt~eI~~~~  379 (459)
T KOG0288|consen  327 WDIRSADKTRS-------------------------VP-LGGRVTSLDLSM-DGLELLSSSRDDTLKVIDLRTKEIRQTF  379 (459)
T ss_pred             EeccCCceeeE-------------------------ee-cCcceeeEeecc-CCeEEeeecCCCceeeeecccccEEEEe
Confidence            99999864311                         11 124799999999 4788888899999999999987643332


Q ss_pred             CCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcceeeeecCCC--ceeEEeCCC
Q 004468          255 QKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDA--SKIMSFTPT  332 (751)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~~~~~~~~--~~~~~~sp~  332 (751)
                      ..             ...    ....-++.+.|||++.|+++|+.||.|+||++.+++...+.......  +..+.|.|.
T Consensus       380 sA-------------~g~----k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~s  442 (459)
T KOG0288|consen  380 SA-------------EGF----KCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPS  442 (459)
T ss_pred             ec-------------ccc----ccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCC
Confidence            11             111    11113889999999999999999999999999998876666555444  778889998


Q ss_pred             CCCcccC
Q 004468          333 LNGLELQ  339 (751)
Q Consensus       333 ~~~~~~~  339 (751)
                      +.++...
T Consensus       443 G~~Llsa  449 (459)
T KOG0288|consen  443 GSGLLSA  449 (459)
T ss_pred             Cchhhcc
Confidence            7776544

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=9.3e-23  Score=198.93  Aligned_cols=202  Identities=12%  Similarity=0.191  Sum_probs=155.9

Q ss_pred             EEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCC
Q 004468           53 VNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGL  132 (751)
Q Consensus        53 V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~  132 (751)
                      -+|+.||+.|.+||+|..||.|.|||+.+...-..+ .+|..+|.|++|+++  |++|+|+|.|..|.+||+..+     
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~l-saH~~pi~sl~WS~d--gr~LltsS~D~si~lwDl~~g-----   97 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARML-SAHVRPITSLCWSRD--GRKLLTSSRDWSIKLWDLLKG-----   97 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhhhh-hccccceeEEEecCC--CCEeeeecCCceeEEEeccCC-----
Confidence            679999999999999999999999999988766666 899999999999999  899999999999999999975     


Q ss_pred             CCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCC
Q 004468          133 DDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPP  212 (751)
Q Consensus       133 ~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  212 (751)
                           .+++.+. ...+|+.+.|+|.+.+.++.+-.+..-.+-++..+...             +..        .....
T Consensus        98 -----s~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~-------------~Lp--------~d~d~  150 (405)
T KOG1273|consen   98 -----SPLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHS-------------VLP--------KDDDG  150 (405)
T ss_pred             -----CceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCcee-------------ecc--------CCCcc
Confidence                 3455554 57899999999987777777766666666666543311             000        00000


Q ss_pred             CCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCC
Q 004468          213 KQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGE  292 (751)
Q Consensus       213 ~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~  292 (751)
                      .......+..|.+ .|++|++|...|.+.+||..+.+.+.++...                    ....|..+.|+..|+
T Consensus       151 dln~sas~~~fdr-~g~yIitGtsKGkllv~~a~t~e~vas~rit--------------------s~~~IK~I~~s~~g~  209 (405)
T KOG1273|consen  151 DLNSSASHGVFDR-RGKYIITGTSKGKLLVYDAETLECVASFRIT--------------------SVQAIKQIIVSRKGR  209 (405)
T ss_pred             ccccccccccccC-CCCEEEEecCcceEEEEecchheeeeeeeec--------------------hheeeeEEEEeccCc
Confidence            0111122335677 5899999999999999999988765543210                    111488999999999


Q ss_pred             EEEEEeCCCcEEEEECCC
Q 004468          293 EVLLSYSGEHVYLMDVNH  310 (751)
Q Consensus       293 ~Ll~~s~d~~I~lwdl~~  310 (751)
                      .|+.++.|..|+.|++..
T Consensus       210 ~liiNtsDRvIR~ye~~d  227 (405)
T KOG1273|consen  210 FLIINTSDRVIRTYEISD  227 (405)
T ss_pred             EEEEecCCceEEEEehhh
Confidence            999999999999999876

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.91  E-value=8.3e-23  Score=198.57  Aligned_cols=267  Identities=14%  Similarity=0.132  Sum_probs=196.1

Q ss_pred             cCCCcEEEEEECC-CCCEEEEEeCCCcEEEEeCCC-CeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECC
Q 004468           48 GHQGCVNAISWNS-KGSLLISGSDDTHINVWSYSS-RKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLS  125 (751)
Q Consensus        48 gH~~~V~~l~~s~-dg~~LaSgs~Dg~I~IWd~~~-~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~  125 (751)
                      .-.+.|.+|+||| ...+|+.||.|++|++|++.. |..+.+....|.++|.+++|+.+  |..+++|+.|+.+++||+.
T Consensus        25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Wsdd--gskVf~g~~Dk~~k~wDL~  102 (347)
T KOG0647|consen   25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDD--GSKVFSGGCDKQAKLWDLA  102 (347)
T ss_pred             CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccC--CceEEeeccCCceEEEEcc
Confidence            3567899999999 566777999999999999986 55555555789999999999999  8999999999999999999


Q ss_pred             CCCCCCCCCCCCCCceeecccCCceeEEEEecCCCC--EEEEEeCCCcEEEEecCCCCCCCCCCC---------------
Q 004468          126 RFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPH--VVWSASEDGTLRQHDFRQGSSCPPAGS---------------  188 (751)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~--~l~s~s~Dg~I~iwDlr~~~~~~~~~~---------------  188 (751)
                      +++           +..+..|..+|+.+.|-+ +..  .|+|||.|++|+.||+|...+......               
T Consensus       103 S~Q-----------~~~v~~Hd~pvkt~~wv~-~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~v  170 (347)
T KOG0647|consen  103 SGQ-----------VSQVAAHDAPVKTCHWVP-GMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAV  170 (347)
T ss_pred             CCC-----------eeeeeecccceeEEEEec-CCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeE
Confidence            753           667788999999999987 434  899999999999999998765421111               


Q ss_pred             -CCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccc
Q 004468          189 -SHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYF  267 (751)
Q Consensus       189 -~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~  267 (751)
                       ...+....++++..+..............+.|++..++ ....+.|+.+|.+-|..+....+...+.     -+|.+.-
T Consensus       171 Vata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d-~~~~alGsiEGrv~iq~id~~~~~~nFt-----FkCHR~~  244 (347)
T KOG0647|consen  171 VATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQD-KDGFALGSIEGRVAIQYIDDPNPKDNFT-----FKCHRST  244 (347)
T ss_pred             EEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEec-CCceEeeeecceEEEEecCCCCccCcee-----EEEeccC
Confidence             11222344566655543322222224567889999985 5666999999999999888754322211     1222211


Q ss_pred             cccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcceeeeecCCCceeEEeCCCCCCcccC
Q 004468          268 CPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQ  339 (751)
Q Consensus       268 ~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~  339 (751)
                      .+     ....-+.|++|+|+|.-..|++.++||++.+||-+...+......+..++...+|+.++.-.+.+
T Consensus       245 ~~-----~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA  311 (347)
T KOG0647|consen  245 NS-----VNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYA  311 (347)
T ss_pred             CC-----CCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEE
Confidence            11     00123579999999999999999999999999988755555556667777778887766555444

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.91  E-value=4.5e-23  Score=205.98  Aligned_cols=253  Identities=20%  Similarity=0.282  Sum_probs=187.8

Q ss_pred             cccccccchhhhccccccEEeccCCCcEEEEEECC---CCCEEEEEeCCCcEEEEeCCCCeEEEE-e--cccCCcceEEE
Q 004468           26 VNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNS---KGSLLISGSDDTHINVWSYSSRKLLHS-I--ETGHSANVFCT   99 (751)
Q Consensus        26 ~~~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~---dg~~LaSgs~Dg~I~IWd~~~~~~~~~-l--~~~h~~~V~~v   99 (751)
                      |+..+++|+   .+.+.++++.||.++|..++|--   ....|+++|.|.++++|..+.+..... +  ..||...|-+|
T Consensus       123 YDg~~riWd---~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sV  199 (423)
T KOG0313|consen  123 YDGTSRIWD---LKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSV  199 (423)
T ss_pred             cCCeeEEEe---cCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEE
Confidence            445555554   45678899999999999988854   334699999999999999876653321 1  24999999999


Q ss_pred             EEecCCCCcEEEEEECCCcEEEEECCCCCCCCC---------------CCCCCCCceeecccCCceeEEEEecCCCCEEE
Q 004468          100 KFVPETSDELVVSGAGDAEVRLFNLSRFSGRGL---------------DDNAITPSALYQCHTRRVKKLAVEVGNPHVVW  164 (751)
Q Consensus       100 ~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~---------------~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~  164 (751)
                      ...++  +..++|||.|.+|+||+........+               ......|+.++.+|+.+|.++.|++  ...+.
T Consensus       200 sv~~s--gtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d--~~v~y  275 (423)
T KOG0313|consen  200 SVDSS--GTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD--ATVIY  275 (423)
T ss_pred             EecCC--CCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC--CCceE
Confidence            99999  89999999999999999432111111               1222467889999999999999986  46788


Q ss_pred             EEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEe
Q 004468          165 SASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYD  244 (751)
Q Consensus       165 s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD  244 (751)
                      |+|.|.+|+.||+.++.....           +               .....++|++.+| ..++|++|+.|..||+||
T Consensus       276 S~SwDHTIk~WDletg~~~~~-----------~---------------~~~ksl~~i~~~~-~~~Ll~~gssdr~irl~D  328 (423)
T KOG0313|consen  276 SVSWDHTIKVWDLETGGLKST-----------L---------------TTNKSLNCISYSP-LSKLLASGSSDRHIRLWD  328 (423)
T ss_pred             eecccceEEEEEeecccceee-----------e---------------ecCcceeEeeccc-ccceeeecCCCCceeecC
Confidence            999999999999999864311           0               0245789999999 589999999999999999


Q ss_pred             CCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCC-EEEEEeCCCcEEEEECCCCC-cceeeeecCC
Q 004468          245 RRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGE-EVLLSYSGEHVYLMDVNHAG-GRAMRYTVGD  322 (751)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~-~Ll~~s~d~~I~lwdl~~~~-~~~~~~~~~~  322 (751)
                      .|++....          ..+.|       .||.+ .|.++.|+|... +|++++.|+++++||+++.. .......+.+
T Consensus       329 PR~~~gs~----------v~~s~-------~gH~n-wVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~D  390 (423)
T KOG0313|consen  329 PRTGDGSV----------VSQSL-------IGHKN-WVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHND  390 (423)
T ss_pred             CCCCCCce----------eEEee-------ecchh-hhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCc
Confidence            99864211          11122       46777 799999999665 56778889999999999954 2223333433


Q ss_pred             CceeEEeC
Q 004468          323 ASKIMSFT  330 (751)
Q Consensus       323 ~~~~~~~s  330 (751)
                      .+-.+.|.
T Consensus       391 Kvl~vdW~  398 (423)
T KOG0313|consen  391 KVLSVDWN  398 (423)
T ss_pred             eEEEEecc
Confidence            33334444

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.91  E-value=2e-22  Score=204.31  Aligned_cols=201  Identities=19%  Similarity=0.324  Sum_probs=172.6

Q ss_pred             CcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCC
Q 004468           51 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGR  130 (751)
Q Consensus        51 ~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~  130 (751)
                      ..+.++...|....+++|+.|.++.++|...++.+..+ .||...|+.+.|+|+  ...+++++.|..|+||.....+  
T Consensus       220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~-~Gh~kki~~v~~~~~--~~~v~~aSad~~i~vws~~~~s--  294 (506)
T KOG0289|consen  220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATL-KGHTKKITSVKFHKD--LDTVITASADEIIRVWSVPLSS--  294 (506)
T ss_pred             CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhc-cCcceEEEEEEeccc--hhheeecCCcceEEeecccccc--
Confidence            46888888888889999999999999999999999888 899999999999999  6899999999999999998652  


Q ss_pred             CCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccC
Q 004468          131 GLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLAD  210 (751)
Q Consensus       131 ~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  210 (751)
                              ......+|..+|+.+..+| .+.+|++++.||+..+.|++++...           .++.+           
T Consensus       295 --------~~~~~~~h~~~V~~ls~h~-tgeYllsAs~d~~w~Fsd~~~g~~l-----------t~vs~-----------  343 (506)
T KOG0289|consen  295 --------EPTSSRPHEEPVTGLSLHP-TGEYLLSASNDGTWAFSDISSGSQL-----------TVVSD-----------  343 (506)
T ss_pred             --------Cccccccccccceeeeecc-CCcEEEEecCCceEEEEEccCCcEE-----------EEEee-----------
Confidence                    3566788999999999999 6789999999999999999998633           11111           


Q ss_pred             CCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCC
Q 004468          211 PPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPN  290 (751)
Q Consensus       211 ~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspd  290 (751)
                       ......+++.+|+| |+.+|.+|..|+.|+|||+.....+..+                    .+|.+ +|+.++|+.+
T Consensus       344 -~~s~v~~ts~~fHp-DgLifgtgt~d~~vkiwdlks~~~~a~F--------------------pght~-~vk~i~FsEN  400 (506)
T KOG0289|consen  344 -ETSDVEYTSAAFHP-DGLIFGTGTPDGVVKIWDLKSQTNVAKF--------------------PGHTG-PVKAISFSEN  400 (506)
T ss_pred             -ccccceeEEeeEcC-CceEEeccCCCceEEEEEcCCccccccC--------------------CCCCC-ceeEEEeccC
Confidence             12346799999999 5899999999999999999887644333                    23444 6999999999


Q ss_pred             CCEEEEEeCCCcEEEEECCC
Q 004468          291 GEEVLLSYSGEHVYLMDVNH  310 (751)
Q Consensus       291 g~~Ll~~s~d~~I~lwdl~~  310 (751)
                      |-+|++++.|+.|++||++.
T Consensus       401 GY~Lat~add~~V~lwDLRK  420 (506)
T KOG0289|consen  401 GYWLATAADDGSVKLWDLRK  420 (506)
T ss_pred             ceEEEEEecCCeEEEEEehh
Confidence            99999999999999999988

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.91  E-value=3.8e-22  Score=206.76  Aligned_cols=249  Identities=22%  Similarity=0.331  Sum_probs=198.4

Q ss_pred             ccccccchhhhccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCC
Q 004468           27 NHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETS  106 (751)
Q Consensus        27 ~~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~  106 (751)
                      +..+.+|+..  ..+....+.+|...|..+.|++++++|++++.|+.|++|++.+++.+..+ ..|...|.++.|+|+  
T Consensus        30 ~g~i~i~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~-~~~~~~i~~~~~~~~--  104 (289)
T cd00200          30 DGTIKVWDLE--TGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTL-TGHTSYVSSVAFSPD--  104 (289)
T ss_pred             CcEEEEEEee--CCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEE-eccCCcEEEEEEcCC--
Confidence            4566666533  33467788999999999999999999999999999999999988788777 689999999999998  


Q ss_pred             CcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCC
Q 004468          107 DELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPA  186 (751)
Q Consensus       107 ~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~  186 (751)
                      +.++++++.|+.|++||+...          ++...+..|...|.+++|+| ++.++++++.||.|++||++.++...  
T Consensus       105 ~~~~~~~~~~~~i~~~~~~~~----------~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~~~~i~i~d~~~~~~~~--  171 (289)
T cd00200         105 GRILSSSSRDKTIKVWDVETG----------KCLTTLRGHTDWVNSVAFSP-DGTFVASSSQDGTIKLWDLRTGKCVA--  171 (289)
T ss_pred             CCEEEEecCCCeEEEEECCCc----------EEEEEeccCCCcEEEEEEcC-cCCEEEEEcCCCcEEEEEccccccce--
Confidence            688888888999999999853          44677778999999999999 46788888889999999998665321  


Q ss_pred             CCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCcccc
Q 004468          187 GSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNY  266 (751)
Q Consensus       187 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~  266 (751)
                                             ....+...+.++.|+|+ +..+++++.|+.|++||++..+.+..+            
T Consensus       172 -----------------------~~~~~~~~i~~~~~~~~-~~~l~~~~~~~~i~i~d~~~~~~~~~~------------  215 (289)
T cd00200         172 -----------------------TLTGHTGEVNSVAFSPD-GEKLLSSSSDGTIKLWDLSTGKCLGTL------------  215 (289)
T ss_pred             -----------------------eEecCccccceEEECCC-cCEEEEecCCCcEEEEECCCCceecch------------
Confidence                                   11124567999999995 678888888999999999875543322            


Q ss_pred             ccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcceeeeecCCCceeEEeCCCCCCccc
Q 004468          267 FCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLEL  338 (751)
Q Consensus       267 ~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~  338 (751)
                              ..|.. .++++.|+|++.++++++.++.|++||+.++........+...+..++|+|+.+.+..
T Consensus       216 --------~~~~~-~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  278 (289)
T cd00200         216 --------RGHEN-GVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLAS  278 (289)
T ss_pred             --------hhcCC-ceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEE
Confidence                    12222 5999999999888888888999999999986655555555667788889887554433

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.91  E-value=4.5e-23  Score=194.77  Aligned_cols=238  Identities=16%  Similarity=0.170  Sum_probs=186.0

Q ss_pred             cccccccccchhhhccc-cccEEeccCCCcEEEEEECC--CCCEEEEEeCCCcEEEEeCCCCeE--EEEecccCCcceEE
Q 004468           24 PDVNHSLQMHSSLVRRL-SQERELEGHQGCVNAISWNS--KGSLLISGSDDTHINVWSYSSRKL--LHSIETGHSANVFC   98 (751)
Q Consensus        24 ~~~~~~l~~~~~~i~~~-~~~~~L~gH~~~V~~l~~s~--dg~~LaSgs~Dg~I~IWd~~~~~~--~~~l~~~h~~~V~~   98 (751)
                      ...+..+++....-... +++.+|.||.|+|+.++|..  -|.+|||++.||.|+||.-.+++-  .... ..|...|++
T Consensus        29 csSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~-~~h~~SVNs  107 (299)
T KOG1332|consen   29 CSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEH-AAHSASVNS  107 (299)
T ss_pred             ecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhh-hhhccccee
Confidence            45677777776554443 78999999999999999976  899999999999999999887743  3334 689999999


Q ss_pred             EEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecC---C----------CCEEEE
Q 004468           99 TKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVG---N----------PHVVWS  165 (751)
Q Consensus        99 v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~---~----------~~~l~s  165 (751)
                      |+|.|..-|-+|++++.||.|.|.+.+...+-       ...+...+|.-.|++++|.|.   +          .+.|+|
T Consensus       108 V~wapheygl~LacasSDG~vsvl~~~~~g~w-------~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvS  180 (299)
T KOG1332|consen  108 VAWAPHEYGLLLACASSDGKVSVLTYDSSGGW-------TTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVS  180 (299)
T ss_pred             ecccccccceEEEEeeCCCcEEEEEEcCCCCc-------cchhhhhccccccceeeecCcCCCccccccCcccccceeec
Confidence            99999977789999999999999999864221       335667899999999999983   1          156999


Q ss_pred             EeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCC---cEEEEEeCCCeEEE
Q 004468          166 ASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRP---HLLLVGGSDAFARL  242 (751)
Q Consensus       166 ~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~---~~l~sgs~D~~Iri  242 (751)
                      |+.|..|+||+....+=.                       .-.++.+|...|..++|.|.-+   .+|++++.||+|.|
T Consensus       181 gGcDn~VkiW~~~~~~w~-----------------------~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viI  237 (299)
T KOG1332|consen  181 GGCDNLVKIWKFDSDSWK-----------------------LERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVII  237 (299)
T ss_pred             cCCccceeeeecCCcchh-----------------------hhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEE
Confidence            999999999998875311                       0122456899999999999642   58999999999999


Q ss_pred             EeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004468          243 YDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (751)
Q Consensus       243 wD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~  310 (751)
                      |-.+......+       ...+..|           ...+..+.||+.|+.|++++.|+.|.+|.-+.
T Consensus       238 wt~~~e~e~wk-------~tll~~f-----------~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~  287 (299)
T KOG1332|consen  238 WTKDEEYEPWK-------KTLLEEF-----------PDVVWRVSWSLSGNILAVSGGDNKVTLWKENV  287 (299)
T ss_pred             EEecCccCccc-------ccccccC-----------CcceEEEEEeccccEEEEecCCcEEEEEEeCC
Confidence            98773211100       0011111           11589999999999999999999999997655

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.91  E-value=1.9e-22  Score=215.22  Aligned_cols=204  Identities=20%  Similarity=0.270  Sum_probs=165.3

Q ss_pred             ccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEE-EecccCCcceEE-EEEecCCCCcEEEEEECCC
Q 004468           40 LSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLH-SIETGHSANVFC-TKFVPETSDELVVSGAGDA  117 (751)
Q Consensus        40 ~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~-~l~~~h~~~V~~-v~fsp~s~~~~l~sgs~Dg  117 (751)
                      .++.++|.||+..|..+++.+. ..++++|.||+++||+-...+.+. ....+|.+-|.+ +++.+ +++-.|++|+.|.
T Consensus         4 Y~ls~~l~gH~~DVr~v~~~~~-~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e-~~~~~l~~g~~D~   81 (745)
T KOG0301|consen    4 YKLSHELEGHKSDVRAVAVTDG-VCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAE-SDKGRLVVGGMDT   81 (745)
T ss_pred             ceeEEEeccCccchheeEecCC-eEEeecCCCCceeeeeccCcccccceecccCcceeeccceecc-ccCcceEeecccc
Confidence            4678899999999999988754 489999999999999986555443 333678888888 88887 3345699999999


Q ss_pred             cEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEE
Q 004468          118 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNIL  197 (751)
Q Consensus       118 ~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l  197 (751)
                      +|.+|.+...          .|+.++.+|...|.+++... ++. ++|||.|.++++|-...-.                
T Consensus        82 ~i~v~~~~~~----------~P~~~LkgH~snVC~ls~~~-~~~-~iSgSWD~TakvW~~~~l~----------------  133 (745)
T KOG0301|consen   82 TIIVFKLSQA----------EPLYTLKGHKSNVCSLSIGE-DGT-LISGSWDSTAKVWRIGELV----------------  133 (745)
T ss_pred             eEEEEecCCC----------CchhhhhccccceeeeecCC-cCc-eEecccccceEEecchhhh----------------
Confidence            9999999865          78999999999999998765 444 7899999999999765432                


Q ss_pred             EecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCc
Q 004468          198 LDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGR  277 (751)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  277 (751)
                                 ...++|...|.++..-|.  ..+++|+.|.+||+|.-.+               +++.|       .||
T Consensus       134 -----------~~l~gH~asVWAv~~l~e--~~~vTgsaDKtIklWk~~~---------------~l~tf-------~gH  178 (745)
T KOG0301|consen  134 -----------YSLQGHTASVWAVASLPE--NTYVTGSADKTIKLWKGGT---------------LLKTF-------SGH  178 (745)
T ss_pred             -----------cccCCcchheeeeeecCC--CcEEeccCcceeeeccCCc---------------hhhhh-------ccc
Confidence                       124568999999999995  3999999999999998643               34444       567


Q ss_pred             cccceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004468          278 SSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (751)
Q Consensus       278 ~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~  310 (751)
                      ... |..+++-+++. +++++.||.|++|++..
T Consensus       179 tD~-VRgL~vl~~~~-flScsNDg~Ir~w~~~g  209 (745)
T KOG0301|consen  179 TDC-VRGLAVLDDSH-FLSCSNDGSIRLWDLDG  209 (745)
T ss_pred             hhh-eeeeEEecCCC-eEeecCCceEEEEeccC
Confidence            774 99999998864 78999999999999744

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.91  E-value=4.5e-23  Score=211.09  Aligned_cols=231  Identities=19%  Similarity=0.279  Sum_probs=184.0

Q ss_pred             cccccEEeccCCCcEEEEEECCCCC-EEEEEeCCCcEEEEeCCCCeE------EEEecccCCcceEEEEEecCCCCcEEE
Q 004468           39 RLSQERELEGHQGCVNAISWNSKGS-LLISGSDDTHINVWSYSSRKL------LHSIETGHSANVFCTKFVPETSDELVV  111 (751)
Q Consensus        39 ~~~~~~~L~gH~~~V~~l~~s~dg~-~LaSgs~Dg~I~IWd~~~~~~------~~~l~~~h~~~V~~v~fsp~s~~~~l~  111 (751)
                      ...+...|.||+++=..|+|++... .|++|+.|++|++||+.....      ......+|...|..++|+|.. ..+|+
T Consensus       166 ~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h-~~lF~  244 (422)
T KOG0264|consen  166 ECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLH-EDLFG  244 (422)
T ss_pred             cCCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccc-hhhhe
Confidence            4456669999999888999999544 899999999999999864322      223348999999999999997 78999


Q ss_pred             EEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCC
Q 004468          112 SGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQ  191 (751)
Q Consensus       112 sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~  191 (751)
                      +++.|+.+.|||+++.+        .++.+...+|...|.|++|+|.++.+|||||.|++|.+||+|....+        
T Consensus       245 sv~dd~~L~iwD~R~~~--------~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~--------  308 (422)
T KOG0264|consen  245 SVGDDGKLMIWDTRSNT--------SKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKP--------  308 (422)
T ss_pred             eecCCCeEEEEEcCCCC--------CCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccC--------
Confidence            99999999999999631        15678888999999999999999999999999999999999987632        


Q ss_pred             ccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCC-CCCCCcccccccc
Q 004468          192 ECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKR-MSPPPCVNYFCPM  270 (751)
Q Consensus       192 ~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~-~~~~~~~~~~~~~  270 (751)
                                      +....+|...|.++.|+|.....|++++.|+.+.|||+............ ..|+. +.     
T Consensus       309 ----------------lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppE-ll-----  366 (422)
T KOG0264|consen  309 ----------------LHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPE-LL-----  366 (422)
T ss_pred             ----------------ceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcc-ee-----
Confidence                            44556689999999999998899999999999999999865433221111 11221 11     


Q ss_pred             ccccCCccccceEEEEEcCCCCEEE-EEeCCCcEEEEECCC
Q 004468          271 HLSEHGRSSLHLTHVTFSPNGEEVL-LSYSGEHVYLMDVNH  310 (751)
Q Consensus       271 ~~~~~g~~~~~vt~v~fspdg~~Ll-~~s~d~~I~lwdl~~  310 (751)
                       +.-.||.. .|+.+.|+|+..+++ +.+.|+.+.||.+..
T Consensus       367 -F~HgGH~~-kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~  405 (422)
T KOG0264|consen  367 -FIHGGHTA-KVSDFSWNPNEPWTIASVAEDNILQIWQMAE  405 (422)
T ss_pred             -EEecCccc-ccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence             11245655 599999999988765 456699999999875

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.91  E-value=4.9e-23  Score=194.50  Aligned_cols=175  Identities=15%  Similarity=0.139  Sum_probs=134.7

Q ss_pred             EEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEe-cCCCCEEE
Q 004468           86 HSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVE-VGNPHVVW  164 (751)
Q Consensus        86 ~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s-p~~~~~l~  164 (751)
                      .++.+.|...|.++...--  |+.|+||+.|++|+|+.++...+       ..++.++.+|.++|..++|. |--+.+|+
T Consensus         4 q~idt~H~D~IHda~lDyy--gkrlATcsSD~tVkIf~v~~n~~-------s~ll~~L~Gh~GPVwqv~wahPk~G~iLA   74 (299)
T KOG1332|consen    4 QTIDTQHEDMIHDAQLDYY--GKRLATCSSDGTVKIFEVRNNGQ-------SKLLAELTGHSGPVWKVAWAHPKFGTILA   74 (299)
T ss_pred             eehhhhhhhhhhHhhhhhh--cceeeeecCCccEEEEEEcCCCC-------ceeeeEecCCCCCeeEEeecccccCcEee
Confidence            4555789999998887766  89999999999999999986532       25688999999999999995 44568999


Q ss_pred             EEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCC-CcEEEEEeCCCeEEEE
Q 004468          165 SASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR-PHLLLVGGSDAFARLY  243 (751)
Q Consensus       165 s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~-~~~l~sgs~D~~Iriw  243 (751)
                      |++.||.|.||.-..++                       .........|...|++++|.|.+ +-.|++++.||.|.|.
T Consensus        75 ScsYDgkVIiWke~~g~-----------------------w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl  131 (299)
T KOG1332|consen   75 SCSYDGKVIIWKEENGR-----------------------WTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVL  131 (299)
T ss_pred             EeecCceEEEEecCCCc-----------------------hhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEE
Confidence            99999999999877653                       11233445588999999999964 3478899999999999


Q ss_pred             eCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCC---C-----------CEEEEEeCCCcEEEEECC
Q 004468          244 DRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPN---G-----------EEVLLSYSGEHVYLMDVN  309 (751)
Q Consensus       244 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspd---g-----------~~Ll~~s~d~~I~lwdl~  309 (751)
                      +.+....-           +.....      ..|.. .|++++|.|-   |           +.|++|+.|+.|+||+.+
T Consensus       132 ~~~~~g~w-----------~t~ki~------~aH~~-GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~  193 (299)
T KOG1332|consen  132 TYDSSGGW-----------TTSKIV------FAHEI-GVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFD  193 (299)
T ss_pred             EEcCCCCc-----------cchhhh------hcccc-ccceeeecCcCCCccccccCcccccceeeccCCccceeeeecC
Confidence            98764100           011111      22433 4999999996   5           568899999999999877


Q ss_pred             C
Q 004468          310 H  310 (751)
Q Consensus       310 ~  310 (751)
                      +
T Consensus       194 ~  194 (299)
T KOG1332|consen  194 S  194 (299)
T ss_pred             C
Confidence            6

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.90  E-value=4.5e-23  Score=201.17  Aligned_cols=259  Identities=19%  Similarity=0.236  Sum_probs=209.5

Q ss_pred             cccccccchhhhccccccE------EeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEE
Q 004468           26 VNHSLQMHSSLVRRLSQER------ELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCT   99 (751)
Q Consensus        26 ~~~~l~~~~~~i~~~~~~~------~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v   99 (751)
                      ++.-+-+|.-...+++.--      .|--|.+.|.|+.|+.|...||||+.||.|+||.+.+|.++..|...|+..|+|+
T Consensus       233 vDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l  312 (508)
T KOG0275|consen  233 VDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCL  312 (508)
T ss_pred             ccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEE
Confidence            4555566665544443222      2344789999999999999999999999999999999999999988999999999


Q ss_pred             EEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCC
Q 004468          100 KFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQ  179 (751)
Q Consensus       100 ~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~  179 (751)
                      .|+.+  +..+++++.|.+|+|+-+..+          ++++.+.+|+..|+...|.+ +++.+++++.||+|++|+..+
T Consensus       313 ~FSrD--~SqiLS~sfD~tvRiHGlKSG----------K~LKEfrGHsSyvn~a~ft~-dG~~iisaSsDgtvkvW~~Kt  379 (508)
T KOG0275|consen  313 SFSRD--NSQILSASFDQTVRIHGLKSG----------KCLKEFRGHSSYVNEATFTD-DGHHIISASSDGTVKVWHGKT  379 (508)
T ss_pred             EEccC--cchhhcccccceEEEeccccc----------hhHHHhcCccccccceEEcC-CCCeEEEecCCccEEEecCcc
Confidence            99999  789999999999999999965          66899999999999999999 778899999999999999988


Q ss_pred             CCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCC
Q 004468          180 GSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMS  259 (751)
Q Consensus       180 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~  259 (751)
                      .++...                       ....+....|+++-.-|.++..++++...++|.|.++.- +.         
T Consensus       380 teC~~T-----------------------fk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qG-Qv---------  426 (508)
T KOG0275|consen  380 TECLST-----------------------FKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQG-QV---------  426 (508)
T ss_pred             hhhhhh-----------------------ccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccc-eE---------
Confidence            764421                       122335678889999898899999999999999998863 22         


Q ss_pred             CCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcceeeeecCCCceeEEeCCCCCCcccC
Q 004468          260 PPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQ  339 (751)
Q Consensus       260 ~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~  339 (751)
                          ++.|..+.     ..++..-+++.||.|.++.+.+.|+.+|.|.+.+++.......+...+-.++.+|-.+-++..
T Consensus       427 ----VrsfsSGk-----REgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsY  497 (508)
T KOG0275|consen  427 ----VRSFSSGK-----REGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASY  497 (508)
T ss_pred             ----EeeeccCC-----ccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhh
Confidence                23332221     122246678899999999999999999999999998887777777777778888877665443

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.90  E-value=1.7e-22  Score=208.09  Aligned_cols=200  Identities=18%  Similarity=0.286  Sum_probs=164.4

Q ss_pred             CCcEEEEEECCCCC-EEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCC
Q 004468           50 QGCVNAISWNSKGS-LLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFS  128 (751)
Q Consensus        50 ~~~V~~l~~s~dg~-~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~  128 (751)
                      ...|..|+|+|... -+|+++. -.+.||+..+.....++ ......|.++.|..+  |.+|+.|...|.|+|+|+.+. 
T Consensus        26 ~~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~~k~~-srFk~~v~s~~fR~D--G~LlaaGD~sG~V~vfD~k~r-  100 (487)
T KOG0310|consen   26 HNSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSVRKTF-SRFKDVVYSVDFRSD--GRLLAAGDESGHVKVFDMKSR-  100 (487)
T ss_pred             cCcceeEecCCCCCCceEEecc-cEEEEEecchhhhhhhH-HhhccceeEEEeecC--CeEEEccCCcCcEEEeccccH-
Confidence            46899999999543 3554443 37999999888777777 678899999999999  899999999999999996642 


Q ss_pred             CCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecc
Q 004468          129 GRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSL  208 (751)
Q Consensus       129 ~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  208 (751)
                               ..+..+.+|+.+|..+.|+|.+...|++|+.|+.+++||+.+..              +           .
T Consensus       101 ---------~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~--------------v-----------~  146 (487)
T KOG0310|consen  101 ---------VILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAY--------------V-----------Q  146 (487)
T ss_pred             ---------HHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcE--------------E-----------E
Confidence                     34788999999999999999999999999999999999998864              1           1


Q ss_pred             cCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCC-CCccccCCCCCCCCccccccccccccCCccccceEEEEE
Q 004468          209 ADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRML-PPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTF  287 (751)
Q Consensus       209 ~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~f  287 (751)
                      ....+|+..|.|.+|+|..++++++|+.||+||+||+|.. ..+.++                      .++.+|-++.|
T Consensus       147 ~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~el----------------------nhg~pVe~vl~  204 (487)
T KOG0310|consen  147 AELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVEL----------------------NHGCPVESVLA  204 (487)
T ss_pred             EEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEe----------------------cCCCceeeEEE
Confidence            2334588999999999988899999999999999999976 222222                      12336999999


Q ss_pred             cCCCCEEEEEeCCCcEEEEECCCC
Q 004468          288 SPNGEEVLLSYSGEHVYLMDVNHA  311 (751)
Q Consensus       288 spdg~~Ll~~s~d~~I~lwdl~~~  311 (751)
                      -|.|..++++++ ..|++||+.++
T Consensus       205 lpsgs~iasAgG-n~vkVWDl~~G  227 (487)
T KOG0310|consen  205 LPSGSLIASAGG-NSVKVWDLTTG  227 (487)
T ss_pred             cCCCCEEEEcCC-CeEEEEEecCC
Confidence            999998777765 59999999874

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.90  E-value=8.3e-23  Score=210.45  Aligned_cols=241  Identities=22%  Similarity=0.326  Sum_probs=188.3

Q ss_pred             ccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcE
Q 004468           40 LSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEV  119 (751)
Q Consensus        40 ~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V  119 (751)
                      ....+++.-.++.|.++.|-.||++||.|...|.|+|+|+++...+..+ .+|..+|..+.|+|.. +..|++|++|+.+
T Consensus        58 ~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~-~ah~apv~~~~f~~~d-~t~l~s~sDd~v~  135 (487)
T KOG0310|consen   58 RSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQL-YAHQAPVHVTKFSPQD-NTMLVSGSDDKVV  135 (487)
T ss_pred             hhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHH-hhccCceeEEEecccC-CeEEEecCCCceE
Confidence            3455666777899999999999999999999999999997776566667 8999999999999995 7889999999999


Q ss_pred             EEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEe
Q 004468          120 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD  199 (751)
Q Consensus       120 ~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~  199 (751)
                      ++||+.+.          .....+.+|++.|.+.+|+|.++++++|||.||+||+||+|.....             +..
T Consensus       136 k~~d~s~a----------~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~-------------v~e  192 (487)
T KOG0310|consen  136 KYWDLSTA----------YVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSR-------------VVE  192 (487)
T ss_pred             EEEEcCCc----------EEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCce-------------eEE
Confidence            99999964          2255789999999999999988999999999999999999986411             111


Q ss_pred             cccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccc
Q 004468          200 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS  279 (751)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  279 (751)
                      +            .|..+|-++.+-|. +.+|++++. +.|++||+-++......            +       ..|..
T Consensus       193 l------------nhg~pVe~vl~lps-gs~iasAgG-n~vkVWDl~~G~qll~~------------~-------~~H~K  239 (487)
T KOG0310|consen  193 L------------NHGCPVESVLALPS-GSLIASAGG-NSVKVWDLTTGGQLLTS------------M-------FNHNK  239 (487)
T ss_pred             e------------cCCCceeeEEEcCC-CCEEEEcCC-CeEEEEEecCCceehhh------------h-------hcccc
Confidence            1            25678899999994 567777654 68999999865322110            0       11333


Q ss_pred             cceEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcceeeeecCCCceeEEeCCCCCCcccCC
Q 004468          280 LHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQP  340 (751)
Q Consensus       280 ~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~  340 (751)
                       .|||+.+..++..|++++-|+.|++||+.+-+ ..-...-..++-.++.+|+...+...-
T Consensus       240 -tVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~K-vv~s~~~~~pvLsiavs~dd~t~viGm  298 (487)
T KOG0310|consen  240 -TVTCLRLASDSTRLLSGSLDRHVKVFDTTNYK-VVHSWKYPGPVLSIAVSPDDQTVVIGM  298 (487)
T ss_pred             -eEEEEEeecCCceEeecccccceEEEEccceE-EEEeeecccceeeEEecCCCceEEEec
Confidence             59999999999999999999999999977732 222223356666778888655554443

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.90  E-value=5.8e-23  Score=206.69  Aligned_cols=239  Identities=16%  Similarity=0.192  Sum_probs=183.0

Q ss_pred             hccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECC
Q 004468           37 VRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD  116 (751)
Q Consensus        37 i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~D  116 (751)
                      ...+++.++|.||..+|..+.||||.++|++|+.|..+++||+.+|.+.+.+..+|...+.|++|.|+  |..+++|+.|
T Consensus       256 d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pD--g~~~V~Gs~d  333 (519)
T KOG0293|consen  256 DVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPD--GFRFVTGSPD  333 (519)
T ss_pred             CcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccC--CceeEecCCC
Confidence            34478999999999999999999999999999999999999999999999887788899999999999  8999999999


Q ss_pred             CcEEEEECCCCCCCCCCCCCCCCceeecccC-CceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCC--------
Q 004468          117 AEVRLFNLSRFSGRGLDDNAITPSALYQCHT-RRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAG--------  187 (751)
Q Consensus       117 g~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~--------  187 (751)
                      ++|..||+...           .+..+++-. ..|.+++.++ ++..+++...|..|++++..+........        
T Consensus       334 r~i~~wdlDgn-----------~~~~W~gvr~~~v~dlait~-Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~  401 (519)
T KOG0293|consen  334 RTIIMWDLDGN-----------ILGNWEGVRDPKVHDLAITY-DGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSF  401 (519)
T ss_pred             CcEEEecCCcc-----------hhhcccccccceeEEEEEcC-CCcEEEEEecccceeeechhhhhhhccccccCceeEE
Confidence            99999999853           233343332 5689999999 66777788899999999987654321100        


Q ss_pred             CCCC----------ccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCC
Q 004468          188 SSHQ----------ECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKR  257 (751)
Q Consensus       188 ~~~~----------~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~  257 (751)
                      ....          .....+|++............+....+-.-+|-..+..++++|+.|+.|+||++++++++..+   
T Consensus       402 ~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~L---  478 (519)
T KOG0293|consen  402 SISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVL---  478 (519)
T ss_pred             EEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEee---
Confidence            0011          112345666643332222223333445455676655689999999999999999999877655   


Q ss_pred             CCCCCccccccccccccCCccccceEEEEEcCCC-CEEEEEeCCCcEEEEECCC
Q 004468          258 MSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNG-EEVLLSYSGEHVYLMDVNH  310 (751)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg-~~Ll~~s~d~~I~lwdl~~  310 (751)
                                       .||.. .|++|+|+|.. .++++++.||+|+||....
T Consensus       479 -----------------sGHs~-~vNcVswNP~~p~m~ASasDDgtIRIWg~~~  514 (519)
T KOG0293|consen  479 -----------------SGHSK-TVNCVSWNPADPEMFASASDDGTIRIWGPSD  514 (519)
T ss_pred             -----------------cCCcc-eeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence                             45554 59999999955 5678888899999998765

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.90  E-value=7.4e-22  Score=201.96  Aligned_cols=207  Identities=21%  Similarity=0.290  Sum_probs=170.1

Q ss_pred             cEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEE-Eec----------------ccCCcceEEEEEecCC
Q 004468           43 ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLH-SIE----------------TGHSANVFCTKFVPET  105 (751)
Q Consensus        43 ~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~-~l~----------------~~h~~~V~~v~fsp~s  105 (751)
                      ...+..|.-.|.||+++|++++..+++.|++|.=|++.+++... .+.                .+|...|.+++.+|+ 
T Consensus       135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~D-  213 (479)
T KOG0299|consen  135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSD-  213 (479)
T ss_pred             ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCC-
Confidence            56778899999999999999999999999999999998887441 111                278899999999999 


Q ss_pred             CCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCC
Q 004468          106 SDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPP  185 (751)
Q Consensus       106 ~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~  185 (751)
                       +++|++|+.|..|.||+..+.          ++++.+.+|.+.|.+++|-- +.+-+.+++.|++|++|++.....   
T Consensus       214 -gkylatgg~d~~v~Iw~~~t~----------ehv~~~~ghr~~V~~L~fr~-gt~~lys~s~Drsvkvw~~~~~s~---  278 (479)
T KOG0299|consen  214 -GKYLATGGRDRHVQIWDCDTL----------EHVKVFKGHRGAVSSLAFRK-GTSELYSASADRSVKVWSIDQLSY---  278 (479)
T ss_pred             -CcEEEecCCCceEEEecCccc----------chhhcccccccceeeeeeec-CccceeeeecCCceEEEehhHhHH---
Confidence             899999999999999999975          66888999999999999976 677888999999999999887542   


Q ss_pred             CCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccc
Q 004468          186 AGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVN  265 (751)
Q Consensus       186 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~  265 (751)
                                            +....+|...|..|+... ..+.+.+|+.|+++++|++.....+              
T Consensus       279 ----------------------vetlyGHqd~v~~IdaL~-reR~vtVGgrDrT~rlwKi~eesql--------------  321 (479)
T KOG0299|consen  279 ----------------------VETLYGHQDGVLGIDALS-RERCVTVGGRDRTVRLWKIPEESQL--------------  321 (479)
T ss_pred             ----------------------HHHHhCCccceeeechhc-ccceEEeccccceeEEEecccccee--------------
Confidence                                  233445788898888877 4678888889999999999432211              


Q ss_pred             cccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 004468          266 YFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (751)
Q Consensus       266 ~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~  311 (751)
                      .|       +++.+ .+-+++|-.+ .++++|+.+|.|.||++...
T Consensus       322 if-------rg~~~-sidcv~~In~-~HfvsGSdnG~IaLWs~~KK  358 (479)
T KOG0299|consen  322 IF-------RGGEG-SIDCVAFIND-EHFVSGSDNGSIALWSLLKK  358 (479)
T ss_pred             ee-------eCCCC-CeeeEEEecc-cceeeccCCceEEEeeeccc
Confidence            11       23333 4888888755 56899999999999999883

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.90  E-value=1.2e-22  Score=197.89  Aligned_cols=244  Identities=21%  Similarity=0.321  Sum_probs=196.4

Q ss_pred             cccccccccchhhhccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeC------CC----------------
Q 004468           24 PDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSY------SS----------------   81 (751)
Q Consensus        24 ~~~~~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~------~~----------------   81 (751)
                      ...++.-.+|.  +++.+++.++.||.|.||+|+|++.+.+++++|.|++..||..      ..                
T Consensus       166 ASADhTA~iWs--~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~s  243 (481)
T KOG0300|consen  166 ASADHTARIWS--LESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHS  243 (481)
T ss_pred             cccccceeEEe--eccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcc
Confidence            34566777776  6778899999999999999999999999999999999999961      10                


Q ss_pred             ------------------CeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceee
Q 004468           82 ------------------RKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALY  143 (751)
Q Consensus        82 ------------------~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~  143 (751)
                                        ..++..+ ++|.+.|.+..|...  |+.+++++.|.+..+||++++          +++..+
T Consensus       244 De~~~d~d~~~~sD~~tiRvPl~~l-tgH~~vV~a~dWL~g--g~Q~vTaSWDRTAnlwDVEtg----------e~v~~L  310 (481)
T KOG0300|consen  244 DEHNRDTDSSEKSDGHTIRVPLMRL-TGHRAVVSACDWLAG--GQQMVTASWDRTANLWDVETG----------EVVNIL  310 (481)
T ss_pred             cccccccccccccCCceeeeeeeee-eccccceEehhhhcC--cceeeeeeccccceeeeeccC----------ceeccc
Confidence                              0123344 799999999999988  899999999999999999986          778999


Q ss_pred             cccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEE
Q 004468          144 QCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDI  223 (751)
Q Consensus       144 ~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~  223 (751)
                      .+|....+.++.+| ..+++++.+.|.++|+||+|..-                        ..+..+.+|...|+++.|
T Consensus       311 tGHd~ELtHcstHp-tQrLVvTsSrDtTFRLWDFReaI------------------------~sV~VFQGHtdtVTS~vF  365 (481)
T KOG0300|consen  311 TGHDSELTHCSTHP-TQRLVVTSSRDTTFRLWDFREAI------------------------QSVAVFQGHTDTVTSVVF  365 (481)
T ss_pred             cCcchhccccccCC-cceEEEEeccCceeEeccchhhc------------------------ceeeeecccccceeEEEE
Confidence            99999999999999 67899999999999999999542                        124455678999999999


Q ss_pred             eCCCCcEEEEEeCCCeEEEEeCCCCC-CccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCc
Q 004468          224 SSTRPHLLLVGGSDAFARLYDRRMLP-PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEH  302 (751)
Q Consensus       224 sp~~~~~l~sgs~D~~IriwD~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~  302 (751)
                      +.+  ..+++|+.|.+|++||+++.. ++..+                      ....+++.++.+..+..|+.-..+.+
T Consensus       366 ~~d--d~vVSgSDDrTvKvWdLrNMRsplATI----------------------RtdS~~NRvavs~g~~iIAiPhDNRq  421 (481)
T KOG0300|consen  366 NTD--DRVVSGSDDRTVKVWDLRNMRSPLATI----------------------RTDSPANRVAVSKGHPIIAIPHDNRQ  421 (481)
T ss_pred             ecC--CceeecCCCceEEEeeeccccCcceee----------------------ecCCccceeEeecCCceEEeccCCce
Confidence            984  689999999999999998654 33222                      12336899999999999999999999


Q ss_pred             EEEEECCCCCccee----eeecCCCceeEEeCC
Q 004468          303 VYLMDVNHAGGRAM----RYTVGDASKIMSFTP  331 (751)
Q Consensus       303 I~lwdl~~~~~~~~----~~~~~~~~~~~~~sp  331 (751)
                      |+|||++......+    ...+...+...+|.-
T Consensus       422 vRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~e  454 (481)
T KOG0300|consen  422 VRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLE  454 (481)
T ss_pred             EEEEecCCCccccCCcccccccceeeeeeeccc
Confidence            99999998542221    123334444555554

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.90  E-value=1.1e-22  Score=198.15  Aligned_cols=249  Identities=20%  Similarity=0.270  Sum_probs=200.4

Q ss_pred             ccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCC
Q 004468           38 RRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA  117 (751)
Q Consensus        38 ~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg  117 (751)
                      -...++++|.||++.|+.++-...-..+.++|.|.+.+||.++++.++.++ .||.+.|+||+|++.  +.++++++.|+
T Consensus       136 ~~~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y-~GH~GSVNsikfh~s--~~L~lTaSGD~  212 (481)
T KOG0300|consen  136 VKFRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATY-TGHTGSVNSIKFHNS--GLLLLTASGDE  212 (481)
T ss_pred             eeEeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeee-cccccceeeEEeccc--cceEEEccCCc
Confidence            456778899999999999999888889999999999999999999999999 999999999999998  89999999999


Q ss_pred             cEEEEECC----CCCCCC---------C---------CC--------CCCCCceeecccCCceeEEEEecCCCCEEEEEe
Q 004468          118 EVRLFNLS----RFSGRG---------L---------DD--------NAITPSALYQCHTRRVKKLAVEVGNPHVVWSAS  167 (751)
Q Consensus       118 ~V~vwd~~----~~~~~~---------~---------~~--------~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s  167 (751)
                      +..||...    .++...         .         .+        .-..|+..+.+|...|.+..|-. ++..+++++
T Consensus       213 taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~-gg~Q~vTaS  291 (481)
T KOG0300|consen  213 TAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLA-GGQQMVTAS  291 (481)
T ss_pred             chHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhc-Ccceeeeee
Confidence            99999721    111000         0         00        00136677899999999999988 788999999


Q ss_pred             CCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCC
Q 004468          168 EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM  247 (751)
Q Consensus       168 ~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~  247 (751)
                      .|.+..+||++++...                         ....+|...++.++-+|. .+++++.+.|.+.|+||.|.
T Consensus       292 WDRTAnlwDVEtge~v-------------------------~~LtGHd~ELtHcstHpt-QrLVvTsSrDtTFRLWDFRe  345 (481)
T KOG0300|consen  292 WDRTANLWDVETGEVV-------------------------NILTGHDSELTHCSTHPT-QRLVVTSSRDTTFRLWDFRE  345 (481)
T ss_pred             ccccceeeeeccCcee-------------------------ccccCcchhccccccCCc-ceEEEEeccCceeEeccchh
Confidence            9999999999998743                         223347788999999995 78999999999999999983


Q ss_pred             CCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcceeeeecCCCceeE
Q 004468          248 LPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIM  327 (751)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~~~~~~~~~~~~  327 (751)
                      .  +          ..+..|       +||.. .|+++.|.-+.+ +++|+.|.+|++||+.+...+........+++.+
T Consensus       346 a--I----------~sV~VF-------QGHtd-tVTS~vF~~dd~-vVSgSDDrTvKvWdLrNMRsplATIRtdS~~NRv  404 (481)
T KOG0300|consen  346 A--I----------QSVAVF-------QGHTD-TVTSVVFNTDDR-VVSGSDDRTVKVWDLRNMRSPLATIRTDSPANRV  404 (481)
T ss_pred             h--c----------ceeeee-------ccccc-ceeEEEEecCCc-eeecCCCceEEEeeeccccCcceeeecCCcccee
Confidence            2  1          123333       67777 599999998765 7899999999999999987676666666677766


Q ss_pred             EeCCCCCCcc
Q 004468          328 SFTPTLNGLE  337 (751)
Q Consensus       328 ~~sp~~~~~~  337 (751)
                      +.+.....++
T Consensus       405 avs~g~~iIA  414 (481)
T KOG0300|consen  405 AVSKGHPIIA  414 (481)
T ss_pred             EeecCCceEE
Confidence            6665544443

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.89  E-value=3.5e-22  Score=204.63  Aligned_cols=219  Identities=20%  Similarity=0.350  Sum_probs=174.1

Q ss_pred             cCCCcEEEEEECCCC-CEEEEEeCCCcEEEEeCCCCeE----------EEEecccCCcceEEEEEecCCCCcEEEEEECC
Q 004468           48 GHQGCVNAISWNSKG-SLLISGSDDTHINVWSYSSRKL----------LHSIETGHSANVFCTKFVPETSDELVVSGAGD  116 (751)
Q Consensus        48 gH~~~V~~l~~s~dg-~~LaSgs~Dg~I~IWd~~~~~~----------~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~D  116 (751)
                      -|.+.|+.+...|+. .++|+++..+.|.|||+.+..-          -..+ .||.+.-+++.|++.. .-.|++|+.|
T Consensus       122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L-~gH~~eg~glsWn~~~-~g~Lls~~~d  199 (422)
T KOG0264|consen  122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRL-KGHEKEGYGLSWNRQQ-EGTLLSGSDD  199 (422)
T ss_pred             cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEE-Eeeccccccccccccc-ceeEeeccCC
Confidence            499999999999965 5788889999999999864321          1245 7999988999999986 5689999999


Q ss_pred             CcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceE
Q 004468          117 AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNI  196 (751)
Q Consensus       117 g~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~  196 (751)
                      ++|++||+......   .....+...+.+|...|..++|++.+..+|++++.|+.+.|||+|++....            
T Consensus       200 ~~i~lwdi~~~~~~---~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~------------  264 (422)
T KOG0264|consen  200 HTICLWDINAESKE---DKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKP------------  264 (422)
T ss_pred             CcEEEEeccccccC---CccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCC------------
Confidence            99999999864321   122467888999999999999999999999999999999999999742110            


Q ss_pred             EEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCC
Q 004468          197 LLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHG  276 (751)
Q Consensus       197 l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  276 (751)
                                 ......|...|+|++|+|-+..+||+|+.|++|.+||+|++..                  +.|.. .+
T Consensus       265 -----------~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~------------------~lh~~-e~  314 (422)
T KOG0264|consen  265 -----------SHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNK------------------PLHTF-EG  314 (422)
T ss_pred             -----------cccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhccc------------------Cceec-cC
Confidence                       1122347889999999999999999999999999999998752                  11111 34


Q ss_pred             ccccceEEEEEcCCCC-EEEEEeCCCcEEEEECCCCCcc
Q 004468          277 RSSLHLTHVTFSPNGE-EVLLSYSGEHVYLMDVNHAGGR  314 (751)
Q Consensus       277 ~~~~~vt~v~fspdg~-~Ll~~s~d~~I~lwdl~~~~~~  314 (751)
                      |.. .|..|.|||... .|++++.|+.+.|||+..-+..
T Consensus       315 H~d-ev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~e  352 (422)
T KOG0264|consen  315 HED-EVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEE  352 (422)
T ss_pred             CCc-ceEEEEeCCCCCceeEecccCCcEEEEeccccccc
Confidence            555 599999999765 5666777999999999875433

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.89  E-value=6.4e-22  Score=219.86  Aligned_cols=223  Identities=26%  Similarity=0.347  Sum_probs=181.9

Q ss_pred             ccccccchhhhccccccEE-eccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCC
Q 004468           27 NHSLQMHSSLVRRLSQERE-LEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPET  105 (751)
Q Consensus        27 ~~~l~~~~~~i~~~~~~~~-L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s  105 (751)
                      ++.++.|+..  ....+.. |.||.+.|+++++..-+.+|++|+.|.+++|||+.+|.+.+.+ .+|...|.++...+. 
T Consensus       227 ~~tl~~~~~~--~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l-~gh~stv~~~~~~~~-  302 (537)
T KOG0274|consen  227 DSTLHLWDLN--NGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSL-QGHTSSVRCLTIDPF-  302 (537)
T ss_pred             CceeEEeecc--cceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEe-cCCCceEEEEEccCc-
Confidence            4455444432  2334455 9999999999999988889999999999999999999999999 799999999998765 


Q ss_pred             CCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCC
Q 004468          106 SDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPP  185 (751)
Q Consensus       106 ~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~  185 (751)
                         ++++|+.|.+|+||++..+          ..+.++.+|.++|+++...   ..++++|+.||+|++||+++++.   
T Consensus       303 ---~~~sgs~D~tVkVW~v~n~----------~~l~l~~~h~~~V~~v~~~---~~~lvsgs~d~~v~VW~~~~~~c---  363 (537)
T KOG0274|consen  303 ---LLVSGSRDNTVKVWDVTNG----------ACLNLLRGHTGPVNCVQLD---EPLLVSGSYDGTVKVWDPRTGKC---  363 (537)
T ss_pred             ---eEeeccCCceEEEEeccCc----------ceEEEeccccccEEEEEec---CCEEEEEecCceEEEEEhhhcee---
Confidence               7899999999999999965          5588888899999999986   57899999999999999997663   


Q ss_pred             CCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCC-CCccccCCCCCCCCcc
Q 004468          186 AGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRML-PPLTSCQKRMSPPPCV  264 (751)
Q Consensus       186 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~-~~~~~~~~~~~~~~~~  264 (751)
                                            +....+|...|+++.+.+.  ..+++|+.|++|++||+++. +             |+
T Consensus       364 ----------------------l~sl~gH~~~V~sl~~~~~--~~~~Sgs~D~~IkvWdl~~~~~-------------c~  406 (537)
T KOG0274|consen  364 ----------------------LKSLSGHTGRVYSLIVDSE--NRLLSGSLDTTIKVWDLRTKRK-------------CI  406 (537)
T ss_pred             ----------------------eeeecCCcceEEEEEecCc--ceEEeeeeccceEeecCCchhh-------------hh
Confidence                                  3334458899999988763  79999999999999999986 4             33


Q ss_pred             ccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcceeeee
Q 004468          265 NYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYT  319 (751)
Q Consensus       265 ~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~~~~  319 (751)
                      ..+       .+|.. -++.  +...+++|++++.|++|++||..+++.......
T Consensus       407 ~tl-------~~h~~-~v~~--l~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~  451 (537)
T KOG0274|consen  407 HTL-------QGHTS-LVSS--LLLRDNFLVSSSADGTIKLWDAEEGECLRTLEG  451 (537)
T ss_pred             hhh-------cCCcc-cccc--cccccceeEeccccccEEEeecccCceeeeecc
Confidence            333       34444 2433  445678999999999999999999776666555

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.89  E-value=2.4e-22  Score=199.51  Aligned_cols=220  Identities=16%  Similarity=0.272  Sum_probs=179.3

Q ss_pred             cccccccccchhhhccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEec
Q 004468           24 PDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP  103 (751)
Q Consensus        24 ~~~~~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp  103 (751)
                      ..++..+++|+..  .-.+..+++.|.|.|..|++..  ..++++++|++|+.|.+.- ..++++ . ....+..+.-+.
T Consensus        85 Gs~DG~VkiWnls--qR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~-~p~~ti-l-g~s~~~gIdh~~  157 (433)
T KOG0268|consen   85 GSCDGEVKIWNLS--QRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDG-PPLHTI-L-GKSVYLGIDHHR  157 (433)
T ss_pred             cccCceEEEEehh--hhhhhheeecccCceeeEEecc--cceEEecCCcceeeeeccC-Ccceee-e-cccccccccccc
Confidence            4578888888743  4457899999999999999987  6789999999999999864 466666 2 345677777776


Q ss_pred             CCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCC
Q 004468          104 ETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSC  183 (751)
Q Consensus       104 ~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~  183 (751)
                      .  +..++|||.  .|-|||....          .|+..+.--.+.|.++.|+|....+|++|+.|++|.+||+|+..++
T Consensus       158 ~--~~~FaTcGe--~i~IWD~~R~----------~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl  223 (433)
T KOG0268|consen  158 K--NSVFATCGE--QIDIWDEQRD----------NPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPL  223 (433)
T ss_pred             c--cccccccCc--eeeecccccC----------CccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCcc
Confidence            6  688999875  5899999864          6788888888999999999988889999999999999999998865


Q ss_pred             CCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCc
Q 004468          184 PPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPC  263 (751)
Q Consensus       184 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~  263 (751)
                      .          .++..+                .-+.|+|+| ....+++|+.|..++.||+|.+..-            
T Consensus       224 ~----------KVi~~m----------------RTN~IswnP-eafnF~~a~ED~nlY~~DmR~l~~p------------  264 (433)
T KOG0268|consen  224 K----------KVILTM----------------RTNTICWNP-EAFNFVAANEDHNLYTYDMRNLSRP------------  264 (433)
T ss_pred             c----------eeeeec----------------cccceecCc-cccceeeccccccceehhhhhhccc------------
Confidence            2          333333                335789999 7899999999999999999976521            


Q ss_pred             cccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 004468          264 VNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (751)
Q Consensus       264 ~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~  311 (751)
                      +..+       .+|.+ .|.+|.|||.|+.+++|+.|.+|+||..+.+
T Consensus       265 ~~v~-------~dhvs-AV~dVdfsptG~EfvsgsyDksIRIf~~~~~  304 (433)
T KOG0268|consen  265 LNVH-------KDHVS-AVMDVDFSPTGQEFVSGSYDKSIRIFPVNHG  304 (433)
T ss_pred             chhh-------cccce-eEEEeccCCCcchhccccccceEEEeecCCC
Confidence            1111       34555 6999999999999999999999999998874

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.89  E-value=6.8e-22  Score=221.73  Aligned_cols=237  Identities=21%  Similarity=0.330  Sum_probs=180.2

Q ss_pred             cccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCC------------------CeEEEEecccCCcceEEEEEe
Q 004468           41 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSS------------------RKLLHSIETGHSANVFCTKFV  102 (751)
Q Consensus        41 ~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~------------------~~~~~~l~~~h~~~V~~v~fs  102 (751)
                      +.+.+...|.++|+|+.|+|||++||+||+|+.|.||+...                  .+.+..+ .+|.+.|..++|+
T Consensus        60 k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l-~~H~~DV~Dv~Ws  138 (942)
T KOG0973|consen   60 KHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSIL-RGHDSDVLDVNWS  138 (942)
T ss_pred             hhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEE-ecCCCccceeccC
Confidence            34566788999999999999999999999999999998762                  1345555 7999999999999


Q ss_pred             cCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCC
Q 004468          103 PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSS  182 (751)
Q Consensus       103 p~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~  182 (751)
                      |+  +.+||+++.|++|.|||..++          +.+.++.+|...|+.+.|.| -+++|+|-+.|++|++|++.+-..
T Consensus       139 p~--~~~lvS~s~DnsViiwn~~tF----------~~~~vl~~H~s~VKGvs~DP-~Gky~ASqsdDrtikvwrt~dw~i  205 (942)
T KOG0973|consen  139 PD--DSLLVSVSLDNSVIIWNAKTF----------ELLKVLRGHQSLVKGVSWDP-IGKYFASQSDDRTLKVWRTSDWGI  205 (942)
T ss_pred             CC--ccEEEEecccceEEEEccccc----------eeeeeeecccccccceEECC-ccCeeeeecCCceEEEEEccccee
Confidence            98  899999999999999999986          66899999999999999999 679999999999999999765221


Q ss_pred             CCCCCCC--CCccceEEEe-------------------------cccCceecccCCCCCccceEEEEEeCC------C--
Q 004468          183 CPPAGSS--HQECRNILLD-------------------------LRCGAKRSLADPPKQTLSLKSCDISST------R--  227 (751)
Q Consensus       183 ~~~~~~~--~~~~~~~l~~-------------------------~~~~~~~~~~~~~~~~~~v~~i~~sp~------~--  227 (751)
                      .......  +......+..                         +..+....-..+-+|..++.++.|+|.      +  
T Consensus       206 ~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng  285 (942)
T KOG0973|consen  206 EKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNG  285 (942)
T ss_pred             eEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccC
Confidence            1000000  0000000000                         011112222334568889999999983      1  


Q ss_pred             ----Cc----EEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeC
Q 004468          228 ----PH----LLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS  299 (751)
Q Consensus       228 ----~~----~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~  299 (751)
                          +.    .+|+|+.|+.|-||.....+|+-..               .++     .+..|..++|+|||..|++++.
T Consensus       286 ~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi---------------~~l-----f~~SI~DmsWspdG~~LfacS~  345 (942)
T KOG0973|consen  286 TSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVI---------------HNL-----FNKSIVDMSWSPDGFSLFACSL  345 (942)
T ss_pred             CccCCCcceEEEEEecCCccEEEEecCCCCchhhh---------------hhh-----hcCceeeeeEcCCCCeEEEEec
Confidence                21    7899999999999998766554321               111     1225999999999999999999


Q ss_pred             CCcEEEEECCCC
Q 004468          300 GEHVYLMDVNHA  311 (751)
Q Consensus       300 d~~I~lwdl~~~  311 (751)
                      ||+|.++.++..
T Consensus       346 DGtV~~i~Fee~  357 (942)
T KOG0973|consen  346 DGTVALIHFEEK  357 (942)
T ss_pred             CCeEEEEEcchH
Confidence            999999999874

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.89  E-value=9.8e-22  Score=187.98  Aligned_cols=237  Identities=18%  Similarity=0.244  Sum_probs=185.2

Q ss_pred             cccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEEC---
Q 004468           39 RLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG---  115 (751)
Q Consensus        39 ~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~---  115 (751)
                      ....+-++.||++.|+|+..+.+.++|+||+.|.+++|||+++|+++.++.  -..+|..+.|+++  |++++.+..   
T Consensus        41 nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k--~~~~Vk~~~F~~~--gn~~l~~tD~~m  116 (327)
T KOG0643|consen   41 NGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWK--TNSPVKRVDFSFG--GNLILASTDKQM  116 (327)
T ss_pred             CCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEee--cCCeeEEEeeccC--CcEEEEEehhhc
Confidence            456678999999999999999999999999999999999999999999984  4678999999999  777766543   


Q ss_pred             --CCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCcc
Q 004468          116 --DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQEC  193 (751)
Q Consensus       116 --Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~  193 (751)
                        -+.|.++|++.....   ..+.+|...+..+...++.+-|.| -+.+|++|.+||.|.+||++++....         
T Consensus       117 g~~~~v~~fdi~~~~~~---~~s~ep~~kI~t~~skit~a~Wg~-l~~~ii~Ghe~G~is~~da~~g~~~v---------  183 (327)
T KOG0643|consen  117 GYTCFVSVFDIRDDSSD---IDSEEPYLKIPTPDSKITSALWGP-LGETIIAGHEDGSISIYDARTGKELV---------  183 (327)
T ss_pred             CcceEEEEEEccCChhh---hcccCceEEecCCccceeeeeecc-cCCEEEEecCCCcEEEEEcccCceee---------
Confidence              467999999854321   112367888889999999999999 66899999999999999999986431         


Q ss_pred             ceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccc--------
Q 004468          194 RNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVN--------  265 (751)
Q Consensus       194 ~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~--------  265 (751)
                                     .....|...|+.+.++|+ ..++++++.|.+-++||.+++..+.++....+ ..+..        
T Consensus       184 ---------------~s~~~h~~~Ind~q~s~d-~T~FiT~s~Dttakl~D~~tl~v~Kty~te~P-vN~aaisP~~d~V  246 (327)
T KOG0643|consen  184 ---------------DSDEEHSSKINDLQFSRD-RTYFITGSKDTTAKLVDVRTLEVLKTYTTERP-VNTAAISPLLDHV  246 (327)
T ss_pred             ---------------echhhhccccccccccCC-cceEEecccCccceeeeccceeeEEEeeeccc-ccceecccccceE
Confidence                           112236678999999995 78999999999999999999886655433211 11100        


Q ss_pred             -----------------------ccccccc-----ccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004468          266 -----------------------YFCPMHL-----SEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (751)
Q Consensus       266 -----------------------~~~~~~~-----~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~  310 (751)
                                             .|.-..+     .-.||-+ +|++|+|+|+|+-..+|+.||.|+|.-+..
T Consensus       247 ilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFG-PINsvAfhPdGksYsSGGEDG~VR~h~Fd~  318 (327)
T KOG0643|consen  247 ILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFG-PINSVAFHPDGKSYSSGGEDGYVRLHHFDS  318 (327)
T ss_pred             EecCCceeeeeeeecccccchhhhHHHHHHHHHhcccccccc-CcceeEECCCCcccccCCCCceEEEEEecc
Confidence                                   0000000     0135555 799999999999999999999999986655

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.89  E-value=8.9e-22  Score=210.83  Aligned_cols=256  Identities=14%  Similarity=0.185  Sum_probs=207.7

Q ss_pred             ccccccchhhhccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCC
Q 004468           27 NHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETS  106 (751)
Q Consensus        27 ~~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~  106 (751)
                      ...+.+|.........+..+.  .+.|+++.|+++|++||.|..+|.|.|||..+.+.+..+..+|...|.+++|..   
T Consensus       196 g~~vylW~~~s~~v~~l~~~~--~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~~---  270 (484)
T KOG0305|consen  196 GQSVYLWSASSGSVTELCSFG--EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWNS---  270 (484)
T ss_pred             cceEEEEecCCCceEEeEecC--CCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEeccC---
Confidence            356667766666654444443  899999999999999999999999999999999999998333999999999993   


Q ss_pred             CcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCC
Q 004468          107 DELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPA  186 (751)
Q Consensus       107 ~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~  186 (751)
                       ..+.+|+.|+.|.++|++..+.         ...++.+|...|..+.|++ ++.+|++|+.|+.+.|||.....+.   
T Consensus       271 -~~lssGsr~~~I~~~dvR~~~~---------~~~~~~~H~qeVCgLkws~-d~~~lASGgnDN~~~Iwd~~~~~p~---  336 (484)
T KOG0305|consen  271 -SVLSSGSRDGKILNHDVRISQH---------VVSTLQGHRQEVCGLKWSP-DGNQLASGGNDNVVFIWDGLSPEPK---  336 (484)
T ss_pred             -ceEEEecCCCcEEEEEEecchh---------hhhhhhcccceeeeeEECC-CCCeeccCCCccceEeccCCCcccc---
Confidence             5899999999999999997532         2335889999999999999 7799999999999999999554422   


Q ss_pred             CCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEe--CCCeEEEEeCCCCCCccccCCCCCCCCcc
Q 004468          187 GSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGG--SDAFARLYDRRMLPPLTSCQKRMSPPPCV  264 (751)
Q Consensus       187 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs--~D~~IriwD~~~~~~~~~~~~~~~~~~~~  264 (751)
                                            .....|...|+.++|+|-...+||+|+  .|+.|++||..++..+..+.         
T Consensus       337 ----------------------~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vd---------  385 (484)
T KOG0305|consen  337 ----------------------FTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVD---------  385 (484)
T ss_pred             ----------------------EEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccc---------
Confidence                                  122338889999999998889999975  69999999999877554321         


Q ss_pred             ccccccccccCCccccceEEEEEcCCCCEEEEEeC--CCcEEEEECCCCCcceeeeecCCCceeEEeCCCCCCcccCCCc
Q 004468          265 NYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS--GEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPI  342 (751)
Q Consensus       265 ~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~--d~~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~  342 (751)
                                   .+..|++|.|++..++|+++.+  ++.|.||+..+.+.......|...+-.++++|+...+..+..+
T Consensus       386 -------------tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~D  452 (484)
T KOG0305|consen  386 -------------TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAAD  452 (484)
T ss_pred             -------------cCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEeccc
Confidence                         2235999999999999887654  7899999999977777777777778889999997777666555


Q ss_pred             ccc
Q 004468          343 HDF  345 (751)
Q Consensus       343 ~~~  345 (751)
                      ...
T Consensus       453 ETl  455 (484)
T KOG0305|consen  453 ETL  455 (484)
T ss_pred             CcE
Confidence            443

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.88  E-value=2.5e-21  Score=189.40  Aligned_cols=237  Identities=19%  Similarity=0.288  Sum_probs=178.3

Q ss_pred             hccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECC
Q 004468           37 VRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD  116 (751)
Q Consensus        37 i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~D  116 (751)
                      .-++.+...+..|.+.|++|+.+  |.++||||.|-+|+|||+.+...+..+ ..|.+.|+++.|.+...-..|++|+.|
T Consensus        30 ~~~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~l-l~HagsitaL~F~~~~S~shLlS~sdD  106 (362)
T KOG0294|consen   30 KPTLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGIL-LSHAGSITALKFYPPLSKSHLLSGSDD  106 (362)
T ss_pred             ceeeeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcce-eccccceEEEEecCCcchhheeeecCC
Confidence            34556678889999999999985  899999999999999999999888888 789999999999998534589999999


Q ss_pred             CcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceE
Q 004468          117 AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNI  196 (751)
Q Consensus       117 g~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~  196 (751)
                      |.|.+|+...-          +++..+++|.+.|+.++.+| .+++-++.+.|+.++.||+-.++........ .....+
T Consensus       107 G~i~iw~~~~W----------~~~~slK~H~~~Vt~lsiHP-S~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~-~~at~v  174 (362)
T KOG0294|consen  107 GHIIIWRVGSW----------ELLKSLKAHKGQVTDLSIHP-SGKLALSVGGDQVLRTWNLVRGRVAFVLNLK-NKATLV  174 (362)
T ss_pred             CcEEEEEcCCe----------EEeeeecccccccceeEecC-CCceEEEEcCCceeeeehhhcCccceeeccC-Ccceee
Confidence            99999999863          67899999999999999999 6789999999999999999887643111110 111123


Q ss_pred             EEecccCcee---------------cccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCC
Q 004468          197 LLDLRCGAKR---------------SLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPP  261 (751)
Q Consensus       197 l~~~~~~~~~---------------~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~  261 (751)
                      .|........               .+...-.....+.|+.|-  ++..+++|+.|+.|++||.....+...+       
T Consensus       175 ~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l--~~~~L~vG~d~~~i~~~D~ds~~~~~~~-------  245 (362)
T KOG0294|consen  175 SWSPQGDHFVVSGRNKIDIYQLDNASVFREIENPKRILCATFL--DGSELLVGGDNEWISLKDTDSDTPLTEF-------  245 (362)
T ss_pred             EEcCCCCEEEEEeccEEEEEecccHhHhhhhhccccceeeeec--CCceEEEecCCceEEEeccCCCccceee-------
Confidence            3321111000               000000111234444444  5689999999999999999876544332       


Q ss_pred             CccccccccccccCCccccceEEEEE--cCCCCEEEEEeCCCcEEEEECCCC
Q 004468          262 PCVNYFCPMHLSEHGRSSLHLTHVTF--SPNGEEVLLSYSGEHVYLMDVNHA  311 (751)
Q Consensus       262 ~~~~~~~~~~~~~~g~~~~~vt~v~f--spdg~~Ll~~s~d~~I~lwdl~~~  311 (751)
                                   .+|.. .|..+.+  .|++.+|+++++||.|++||++..
T Consensus       246 -------------~AH~~-RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~  283 (362)
T KOG0294|consen  246 -------------LAHEN-RVKDIASYTNPEHEYLVTASSDGFIKVWDIDME  283 (362)
T ss_pred             -------------ecchh-heeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence                         34544 5777763  567899999999999999999885

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.88  E-value=1.7e-21  Score=199.38  Aligned_cols=242  Identities=14%  Similarity=0.204  Sum_probs=190.4

Q ss_pred             ccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCC
Q 004468           47 EGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSR  126 (751)
Q Consensus        47 ~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~  126 (751)
                      ++|...|.+++.++||++||+|+.|..|.||+..+...++.+ ++|.+.|.+++|-..+  ..+++++.|++|++|++..
T Consensus       199 ~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~-~ghr~~V~~L~fr~gt--~~lys~s~Drsvkvw~~~~  275 (479)
T KOG0299|consen  199 KGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVF-KGHRGAVSSLAFRKGT--SELYSASADRSVKVWSIDQ  275 (479)
T ss_pred             ccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcc-cccccceeeeeeecCc--cceeeeecCCceEEEehhH
Confidence            489999999999999999999999999999999999999998 8999999999999884  7899999999999999986


Q ss_pred             CCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCcee
Q 004468          127 FSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKR  206 (751)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~  206 (751)
                      .          ..+.++.+|.+.|..|.-.. -...+-.|+.|+++++|++......             ++        
T Consensus       276 ~----------s~vetlyGHqd~v~~IdaL~-reR~vtVGgrDrT~rlwKi~eesql-------------if--------  323 (479)
T KOG0299|consen  276 L----------SYVETLYGHQDGVLGIDALS-RERCVTVGGRDRTVRLWKIPEESQL-------------IF--------  323 (479)
T ss_pred             h----------HHHHHHhCCccceeeechhc-ccceEEeccccceeEEEecccccee-------------ee--------
Confidence            4          45788999999999997765 4566666779999999999443311             11        


Q ss_pred             cccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEE
Q 004468          207 SLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVT  286 (751)
Q Consensus       207 ~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~  286 (751)
                           .++...+-|++|-.  ...+++|+.+|.|.+|++.+.+++...........       .+ ....+ ..+|++++
T Consensus       324 -----rg~~~sidcv~~In--~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~-------~~-~~~~~-~~Witsla  387 (479)
T KOG0299|consen  324 -----RGGEGSIDCVAFIN--DEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIP-------EL-DPVNG-NFWITSLA  387 (479)
T ss_pred             -----eCCCCCeeeEEEec--ccceeeccCCceEEEeeecccCceeEeeccccccC-------Cc-ccccc-ccceeeeE
Confidence                 12456788999875  46899999999999999998887765433221110       00 00111 14899999


Q ss_pred             EcCCCCEEEEEeCCCcEEEEECCCCC---cceeeeecCCCceeEEeCCCCCCcccC
Q 004468          287 FSPNGEEVLLSYSGEHVYLMDVNHAG---GRAMRYTVGDASKIMSFTPTLNGLELQ  339 (751)
Q Consensus       287 fspdg~~Ll~~s~d~~I~lwdl~~~~---~~~~~~~~~~~~~~~~~sp~~~~~~~~  339 (751)
                      ..|....+++|+.+|.|+||-+..+-   .+...+.....++.++|+++...+...
T Consensus       388 ~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk~ivag  443 (479)
T KOG0299|consen  388 VIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSGKRIVAG  443 (479)
T ss_pred             ecccCceEEecCCCCceEEEEecCCccccceeeecccccEEEEEEEccCCCEEEEe
Confidence            99999999999999999999999862   222223346677888888887755444

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.88  E-value=1.5e-21  Score=188.78  Aligned_cols=222  Identities=15%  Similarity=0.267  Sum_probs=167.6

Q ss_pred             eccCCCcEEEEEECC-CCCEEEEEeCCCcEEEEeCCCCe------------EE--EEecccCCcceEEEEEecCCCCcEE
Q 004468           46 LEGHQGCVNAISWNS-KGSLLISGSDDTHINVWSYSSRK------------LL--HSIETGHSANVFCTKFVPETSDELV  110 (751)
Q Consensus        46 L~gH~~~V~~l~~s~-dg~~LaSgs~Dg~I~IWd~~~~~------------~~--~~l~~~h~~~V~~v~fsp~s~~~~l  110 (751)
                      -+.|.|.||+|...+ .|++++||+.||.|.|||+++-.            ++  ..-..+|+..|.++-|-|.. .-++
T Consensus        39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~D-tGmF  117 (397)
T KOG4283|consen   39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPID-TGMF  117 (397)
T ss_pred             eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeec-Ccee
Confidence            356999999999988 69999999999999999987432            11  11125799999999999984 4688


Q ss_pred             EEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCC--CEEEEEeCCCcEEEEecCCCCCCCCCCC
Q 004468          111 VSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNP--HVVWSASEDGTLRQHDFRQGSSCPPAGS  188 (751)
Q Consensus       111 ~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~--~~l~s~s~Dg~I~iwDlr~~~~~~~~~~  188 (751)
                      .+++.|.+++|||..+.+          ....|+ -.+.|++-+|+|-..  .++++|..|-.|++-|+..+...     
T Consensus       118 tssSFDhtlKVWDtnTlQ----------~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~s-----  181 (397)
T KOG4283|consen  118 TSSSFDHTLKVWDTNTLQ----------EAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFS-----  181 (397)
T ss_pred             ecccccceEEEeecccce----------eeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcce-----
Confidence            999999999999999752          233443 467888888988332  37788888999999999988632     


Q ss_pred             CCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCC-CccccCCCC-CCCCcccc
Q 004468          189 SHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP-PLTSCQKRM-SPPPCVNY  266 (751)
Q Consensus       189 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~-~~~~~~~~~-~~~~~~~~  266 (751)
                                          ....+|...|.++.|+|.....|++|+.||.||+||+|... ....+.... ..++.++ 
T Consensus       182 --------------------H~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~-  240 (397)
T KOG4283|consen  182 --------------------HTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILK-  240 (397)
T ss_pred             --------------------eeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCcccc-
Confidence                                12345888999999999877789999999999999999753 222221111 1111111 


Q ss_pred             ccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCC
Q 004468          267 FCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG  312 (751)
Q Consensus       267 ~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~  312 (751)
                            ....|.+ .|.+++|+.+|.++++.+.|..+++|+..++.
T Consensus       241 ------~n~ah~g-kvngla~tSd~~~l~~~gtd~r~r~wn~~~G~  279 (397)
T KOG4283|consen  241 ------TNTAHYG-KVNGLAWTSDARYLASCGTDDRIRVWNMESGR  279 (397)
T ss_pred             ------ccccccc-eeeeeeecccchhhhhccCccceEEeecccCc
Confidence                  1122333 59999999999999999999999999999864

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.88  E-value=3.3e-21  Score=195.52  Aligned_cols=213  Identities=19%  Similarity=0.243  Sum_probs=177.6

Q ss_pred             ccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCC
Q 004468           38 RRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA  117 (751)
Q Consensus        38 ~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg  117 (751)
                      ...+.+.+|+||+..|+.+.|+++...+++++.|..|+||..........+ ..|..+|+.+..+|.  |.||++++.|+
T Consensus       249 ~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~-~~h~~~V~~ls~h~t--geYllsAs~d~  325 (506)
T KOG0289|consen  249 PSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSS-RPHEEPVTGLSLHPT--GEYLLSASNDG  325 (506)
T ss_pred             chhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCcccc-ccccccceeeeeccC--CcEEEEecCCc
Confidence            445677899999999999999999999999999999999998776655555 789999999999999  89999999999


Q ss_pred             cEEEEECCCCCCCCCCCCCCCCceeec--ccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccce
Q 004468          118 EVRLFNLSRFSGRGLDDNAITPSALYQ--CHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRN  195 (751)
Q Consensus       118 ~V~vwd~~~~~~~~~~~~~~~~~~~~~--~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~  195 (751)
                      +....|++++.          .+....  ...-.+++++|+| ++.+|.+|..||.|++||+..+..             
T Consensus       326 ~w~Fsd~~~g~----------~lt~vs~~~s~v~~ts~~fHp-DgLifgtgt~d~~vkiwdlks~~~-------------  381 (506)
T KOG0289|consen  326 TWAFSDISSGS----------QLTVVSDETSDVEYTSAAFHP-DGLIFGTGTPDGVVKIWDLKSQTN-------------  381 (506)
T ss_pred             eEEEEEccCCc----------EEEEEeeccccceeEEeeEcC-CceEEeccCCCceEEEEEcCCccc-------------
Confidence            99999999642          122222  1223489999999 779999999999999999988752             


Q ss_pred             EEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccC
Q 004468          196 ILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEH  275 (751)
Q Consensus       196 ~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (751)
                                  +..+++|..+|+.++|+. +|++|++++.|+.|++||+|+.+...+++..                  
T Consensus       382 ------------~a~Fpght~~vk~i~FsE-NGY~Lat~add~~V~lwDLRKl~n~kt~~l~------------------  430 (506)
T KOG0289|consen  382 ------------VAKFPGHTGPVKAISFSE-NGYWLATAADDGSVKLWDLRKLKNFKTIQLD------------------  430 (506)
T ss_pred             ------------cccCCCCCCceeEEEecc-CceEEEEEecCCeEEEEEehhhcccceeecc------------------
Confidence                        455677999999999999 5899999999999999999998755444211                  


Q ss_pred             CccccceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004468          276 GRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (751)
Q Consensus       276 g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~  310 (751)
                        ....+.++.|.+.|.+|++++.+=+||+++-.+
T Consensus       431 --~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~  463 (506)
T KOG0289|consen  431 --EKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKT  463 (506)
T ss_pred             --ccccceeEEEcCCCCeEEeecceeEEEEEeccc
Confidence              112489999999999999998888888887444

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=1.9e-20  Score=174.57  Aligned_cols=233  Identities=22%  Similarity=0.289  Sum_probs=174.8

Q ss_pred             eccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeE-----EEEecccCCcceEEEEEecC--CCCcEEEEE-ECCC
Q 004468           46 LEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKL-----LHSIETGHSANVFCTKFVPE--TSDELVVSG-AGDA  117 (751)
Q Consensus        46 L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~-----~~~l~~~h~~~V~~v~fsp~--s~~~~l~sg-s~Dg  117 (751)
                      -+-|++.|.|.+|+|+|++||+||.|++|++.-.....+     -..+ .-|.+.|..++|..+  +.+.+|+++ ..|.
T Consensus        85 ~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~-nmhdgtirdl~fld~~~s~~~il~s~gagdc  163 (350)
T KOG0641|consen   85 NKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEF-NMHDGTIRDLAFLDDPESGGAILASAGAGDC  163 (350)
T ss_pred             ccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceee-eecCCceeeeEEecCCCcCceEEEecCCCcc
Confidence            356999999999999999999999999999976543222     1234 569999999999854  456778775 4577


Q ss_pred             cEEEEECCCCCCCCCCCCCCCCceeecccCCceeEE-EEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceE
Q 004468          118 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKL-AVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNI  196 (751)
Q Consensus       118 ~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l-~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~  196 (751)
                      .|++-|...+          .+.+.+.+|++.|.++ .|   ++.+|++|+.|.+||+||+|.+...           ++
T Consensus       164 ~iy~tdc~~g----------~~~~a~sghtghilalysw---n~~m~~sgsqdktirfwdlrv~~~v-----------~~  219 (350)
T KOG0641|consen  164 KIYITDCGRG----------QGFHALSGHTGHILALYSW---NGAMFASGSQDKTIRFWDLRVNSCV-----------NT  219 (350)
T ss_pred             eEEEeecCCC----------CcceeecCCcccEEEEEEe---cCcEEEccCCCceEEEEeeecccee-----------ee
Confidence            8888887765          4588999999999887 44   5689999999999999999987543           22


Q ss_pred             EEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCC
Q 004468          197 LLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHG  276 (751)
Q Consensus       197 l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  276 (751)
                      +-+...+       ..-....|.++++.|. +++|++|-.|....+||+|-+..+.             .|       ..
T Consensus       220 l~~~~~~-------~glessavaav~vdps-grll~sg~~dssc~lydirg~r~iq-------------~f-------~p  271 (350)
T KOG0641|consen  220 LDNDFHD-------GGLESSAVAAVAVDPS-GRLLASGHADSSCMLYDIRGGRMIQ-------------RF-------HP  271 (350)
T ss_pred             ccCcccC-------CCcccceeEEEEECCC-cceeeeccCCCceEEEEeeCCceee-------------ee-------CC
Confidence            2111111       1113467999999995 8999999999999999999876543             33       22


Q ss_pred             ccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCC--cce--eeeecCCCceeEEeCCC
Q 004468          277 RSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG--GRA--MRYTVGDASKIMSFTPT  332 (751)
Q Consensus       277 ~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~--~~~--~~~~~~~~~~~~~~sp~  332 (751)
                      |.. .|.++.|||..-||++++.|..|++=|++..-  +..  +.-.+.+..-...|+|.
T Consensus       272 hsa-dir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~  330 (350)
T KOG0641|consen  272 HSA-DIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQ  330 (350)
T ss_pred             Ccc-ceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCc
Confidence            333 59999999999999999999999999998742  122  22234455555667774

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.88  E-value=7.8e-22  Score=209.01  Aligned_cols=252  Identities=18%  Similarity=0.237  Sum_probs=198.9

Q ss_pred             cCCCcEE---EEEECC-CCCEEEEEeCCCcEEEEeCCCCe------EEEEecccCCcceEEEEEecCCCCcEEEEEECCC
Q 004468           48 GHQGCVN---AISWNS-KGSLLISGSDDTHINVWSYSSRK------LLHSIETGHSANVFCTKFVPETSDELVVSGAGDA  117 (751)
Q Consensus        48 gH~~~V~---~l~~s~-dg~~LaSgs~Dg~I~IWd~~~~~------~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg  117 (751)
                      .|...|+   .+..+. .+++|.|||.||.|++|++....      .+..+ ..|...|+.+...-+  ++.|+|+|.|.
T Consensus        19 qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asm-e~HsDWVNDiiL~~~--~~tlIS~SsDt   95 (735)
T KOG0308|consen   19 QNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASM-EHHSDWVNDIILCGN--GKTLISASSDT   95 (735)
T ss_pred             hccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhh-hhhHhHHhhHHhhcC--CCceEEecCCc
Confidence            4566666   556654 56789999999999999975332      35566 789999999999988  78999999999


Q ss_pred             cEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEE
Q 004468          118 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNIL  197 (751)
Q Consensus       118 ~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l  197 (751)
                      +|++|+......        -+..++..|.+.|+|++.-..+..+++|||.|+.|.+||+.++....   ....      
T Consensus        96 TVK~W~~~~~~~--------~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l---~~s~------  158 (735)
T KOG0308|consen   96 TVKVWNAHKDNT--------FCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATL---VASF------  158 (735)
T ss_pred             eEEEeecccCcc--------hhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhh---hhhc------
Confidence            999999986431        35778899999999999933377899999999999999999874210   0000      


Q ss_pred             EecccCceecccCCC-CCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCC
Q 004468          198 LDLRCGAKRSLADPP-KQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHG  276 (751)
Q Consensus       198 ~~~~~~~~~~~~~~~-~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  276 (751)
                            ......... ++...|++++.++. +..|++|+..+.+|+||.++.+.+..+                    +|
T Consensus       159 ------n~~t~~sl~sG~k~siYSLA~N~t-~t~ivsGgtek~lr~wDprt~~kimkL--------------------rG  211 (735)
T KOG0308|consen  159 ------NNVTVNSLGSGPKDSIYSLAMNQT-GTIIVSGGTEKDLRLWDPRTCKKIMKL--------------------RG  211 (735)
T ss_pred             ------cccccccCCCCCccceeeeecCCc-ceEEEecCcccceEEeccccccceeee--------------------ec
Confidence                  000011112 56789999999995 689999999999999999987765443                    56


Q ss_pred             ccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcceeeeecCCCceeEEeCCCCCCcccCCCcccccc
Q 004468          277 RSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQ  347 (751)
Q Consensus       277 ~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~  347 (751)
                      |.. .|..+-.++||+.++++++||+|+|||+...........|.+.+..+..+|++..+.+...++....
T Consensus       212 HTd-NVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~  281 (735)
T KOG0308|consen  212 HTD-NVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYR  281 (735)
T ss_pred             ccc-ceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEe
Confidence            776 5999999999999999999999999999998777777788888888888998888777766655443

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.87  E-value=7.1e-22  Score=213.17  Aligned_cols=223  Identities=16%  Similarity=0.275  Sum_probs=177.1

Q ss_pred             cEEEEEECC-CCCEEEEEeCCCcEEEEeCCC---CeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCC
Q 004468           52 CVNAISWNS-KGSLLISGSDDTHINVWSYSS---RKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRF  127 (751)
Q Consensus        52 ~V~~l~~s~-dg~~LaSgs~Dg~I~IWd~~~---~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~  127 (751)
                      .++.|+|+. +.++|||++..|.|.+||+..   .+++..| ..|+..|+++.|++.. ..+|+|||.||+|++||++..
T Consensus        89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f-~EH~Rs~~~ldfh~te-p~iliSGSQDg~vK~~DlR~~  166 (839)
T KOG0269|consen   89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVF-NEHERSANKLDFHSTE-PNILISGSQDGTVKCWDLRSK  166 (839)
T ss_pred             ehhhcccccchhhhheeecCCCcEEEEecCccccchhhhHh-hhhccceeeeeeccCC-ccEEEecCCCceEEEEeeecc
Confidence            355678875 578999999999999999986   4555566 8999999999999987 789999999999999999975


Q ss_pred             CCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceec
Q 004468          128 SGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRS  207 (751)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  207 (751)
                                +...++.+....|+.+.|+|..++.|+++.+.|.+++||+|....+                        
T Consensus       167 ----------~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~------------------------  212 (839)
T KOG0269|consen  167 ----------KSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRC------------------------  212 (839)
T ss_pred             ----------cccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhH------------------------
Confidence                      3467788889999999999988899999999999999999998754                        


Q ss_pred             ccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEE
Q 004468          208 LADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTF  287 (751)
Q Consensus       208 ~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~f  287 (751)
                      ......|.++|.|+.|+| +..+||+||.|++|+|||.........        .++            +...+|..|+|
T Consensus       213 ~~k~~AH~GpV~c~nwhP-nr~~lATGGRDK~vkiWd~t~~~~~~~--------~tI------------nTiapv~rVkW  271 (839)
T KOG0269|consen  213 EKKLTAHNGPVLCLNWHP-NREWLATGGRDKMVKIWDMTDSRAKPK--------HTI------------NTIAPVGRVKW  271 (839)
T ss_pred             HHHhhcccCceEEEeecC-CCceeeecCCCccEEEEeccCCCccce--------eEE------------eecceeeeeee
Confidence            222334889999999999 589999999999999999976432111        111            22346999999


Q ss_pred             cCCCCEEEE-EeC--CCcEEEEECCCCCcceeee-ecCCCceeEEeCC
Q 004468          288 SPNGEEVLL-SYS--GEHVYLMDVNHAGGRAMRY-TVGDASKIMSFTP  331 (751)
Q Consensus       288 spdg~~Ll~-~s~--d~~I~lwdl~~~~~~~~~~-~~~~~~~~~~~sp  331 (751)
                      -|...+.++ ++.  |-.|+|||+...=.+...+ .+......++|..
T Consensus       272 RP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~  319 (839)
T KOG0269|consen  272 RPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDS  319 (839)
T ss_pred             ccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccC
Confidence            998876554 443  7899999999864444333 4556666666655

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.87  E-value=5.8e-21  Score=195.84  Aligned_cols=247  Identities=20%  Similarity=0.303  Sum_probs=189.5

Q ss_pred             CCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCC
Q 004468           49 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFS  128 (751)
Q Consensus        49 H~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~  128 (751)
                      -.|.|+||+-+|+|.+|+.|...|.|.+|.+.+|.++..+ .+|-.+|+|+.|+-+  |.+|+|||.||.|.+|.+...-
T Consensus        80 ~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~-~aHYQ~ITcL~fs~d--gs~iiTgskDg~V~vW~l~~lv  156 (476)
T KOG0646|consen   80 LPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVL-SAHYQSITCLKFSDD--GSHIITGSKDGAVLVWLLTDLV  156 (476)
T ss_pred             cccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHH-HhhccceeEEEEeCC--CcEEEecCCCccEEEEEEEeec
Confidence            4678999999999999999999999999999999999988 899999999999999  8999999999999999986421


Q ss_pred             CCCCCCCCCCCceeecccCCceeEEEEecC-CCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceec
Q 004468          129 GRGLDDNAITPSALYQCHTRRVKKLAVEVG-NPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRS  207 (751)
Q Consensus       129 ~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~-~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  207 (751)
                      . .......+|++.+..|+-+|+++...+. -...++|+|.|.++++||+..+..+              ....      
T Consensus       157 ~-a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LL--------------lti~------  215 (476)
T KOG0646|consen  157 S-ADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLL--------------LTIT------  215 (476)
T ss_pred             c-cccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceee--------------EEEe------
Confidence            1 1112245789999999999999998773 1247889999999999999987533              1111      


Q ss_pred             ccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccc--cCCC-CCCCCccccccccccccCCccc-cceE
Q 004468          208 LADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTS--CQKR-MSPPPCVNYFCPMHLSEHGRSS-LHLT  283 (751)
Q Consensus       208 ~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~g~~~-~~vt  283 (751)
                            ....++++++.|. .+.+.+|+.+|.|.+.++........  .+.. .......+       ...||.+ ..|+
T Consensus       216 ------fp~si~av~lDpa-e~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~-------~~~Gh~~~~~IT  281 (476)
T KOG0646|consen  216 ------FPSSIKAVALDPA-ERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQIN-------VLVGHENESAIT  281 (476)
T ss_pred             ------cCCcceeEEEccc-ccEEEecCCcceEEeeehhcCCcccccccccccccccceee-------eeccccCCccee
Confidence                  2467899999995 78999999999999999876552111  0000 00000011       1134544 4699


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECCCCCcceeeeecCCCceeEEeCCCC
Q 004468          284 HVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTL  333 (751)
Q Consensus       284 ~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp~~  333 (751)
                      +++++-||..|++|+.||.|.|||+.+............++..+.+.|--
T Consensus       282 cLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~~  331 (476)
T KOG0646|consen  282 CLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPLE  331 (476)
T ss_pred             EEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeeccc
Confidence            99999999999999999999999999865544444355667777765543

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.87  E-value=3.8e-21  Score=192.01  Aligned_cols=249  Identities=19%  Similarity=0.274  Sum_probs=184.2

Q ss_pred             ccEEeccCCCcEEEEEECCCC--CEEEEEeCCCcEEEEeCCC----------------CeEEEEecccCCcceEEEEEec
Q 004468           42 QERELEGHQGCVNAISWNSKG--SLLISGSDDTHINVWSYSS----------------RKLLHSIETGHSANVFCTKFVP  103 (751)
Q Consensus        42 ~~~~L~gH~~~V~~l~~s~dg--~~LaSgs~Dg~I~IWd~~~----------------~~~~~~l~~~h~~~V~~v~fsp  103 (751)
                      .....-+|.++||.+.-++-|  .+.|+=+..|.|.||++..                .+++.++ .+|.+.=+.++|||
T Consensus       143 ~~~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~-~ghk~EGy~LdWSp  221 (440)
T KOG0302|consen  143 IEMKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTF-NGHKGEGYGLDWSP  221 (440)
T ss_pred             ccccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEe-cccCccceeeeccc
Confidence            334456899999999988855  5778888999999999752                2456677 79999999999999


Q ss_pred             CCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCC
Q 004468          104 ETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSC  183 (751)
Q Consensus       104 ~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~  183 (751)
                      -. ...|+||.--+.|++|...++.-+.       -...+.+|+..|-.|+|+|....+|+|||-||+|+|||+|.+...
T Consensus       222 ~~-~g~LlsGDc~~~I~lw~~~~g~W~v-------d~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~  293 (440)
T KOG0302|consen  222 IK-TGRLLSGDCVKGIHLWEPSTGSWKV-------DQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKK  293 (440)
T ss_pred             cc-ccccccCccccceEeeeeccCceee-------cCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCcc
Confidence            64 3468888888899999998753321       134566799999999999998899999999999999999987422


Q ss_pred             CCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCc
Q 004468          184 PPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPC  263 (751)
Q Consensus       184 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~  263 (751)
                      .        |  ++             ...|...|+.|+||..- .+|++|+.||+++|||+|..+...          .
T Consensus       294 ~--------~--~~-------------~kAh~sDVNVISWnr~~-~lLasG~DdGt~~iwDLR~~~~~~----------p  339 (440)
T KOG0302|consen  294 A--------A--VS-------------TKAHNSDVNVISWNRRE-PLLASGGDDGTLSIWDLRQFKSGQ----------P  339 (440)
T ss_pred             c--------e--eE-------------eeccCCceeeEEccCCc-ceeeecCCCceEEEEEhhhccCCC----------c
Confidence            1        1  11             12367789999999964 499999999999999999765321          1


Q ss_pred             cccccccccccCCccccceEEEEEcCCC-CEEEEEeCCCcEEEEECCCCCc----------------ceeeeec--CCCc
Q 004468          264 VNYFCPMHLSEHGRSSLHLTHVTFSPNG-EEVLLSYSGEHVYLMDVNHAGG----------------RAMRYTV--GDAS  324 (751)
Q Consensus       264 ~~~~~~~~~~~~g~~~~~vt~v~fspdg-~~Ll~~s~d~~I~lwdl~~~~~----------------~~~~~~~--~~~~  324 (751)
                      +..|       ..|.. +|++|.|+|.. ..|++++.|++|.|||+....-                ++++|-|  ..-+
T Consensus       340 VA~f-------k~Hk~-pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~  411 (440)
T KOG0302|consen  340 VATF-------KYHKA-PITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEV  411 (440)
T ss_pred             ceeE-------EeccC-CeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHh
Confidence            2222       12433 79999999954 5778888899999999875321                1133333  2345


Q ss_pred             eeEEeCCCCCCcccCCC
Q 004468          325 KIMSFTPTLNGLELQPP  341 (751)
Q Consensus       325 ~~~~~sp~~~~~~~~~~  341 (751)
                      +.+.|++..++..+...
T Consensus       412 KevhWH~QiPG~lvsTa  428 (440)
T KOG0302|consen  412 KEVHWHRQIPGLLVSTA  428 (440)
T ss_pred             hhheeccCCCCeEEEec
Confidence            56777777776655543

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.86  E-value=5.3e-20  Score=175.73  Aligned_cols=257  Identities=14%  Similarity=0.258  Sum_probs=204.9

Q ss_pred             cccccccccchhhhccccccEEeccCCCcEEEEEECC-CCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEe
Q 004468           24 PDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNS-KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV  102 (751)
Q Consensus        24 ~~~~~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~-dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fs  102 (751)
                      ..+++.+.+|.....++.....++||.+.|-.++|+| +..+|++++.|++|++||...+++...+ ....++ .-+.|+
T Consensus        38 gs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i-~~~~en-i~i~ws  115 (313)
T KOG1407|consen   38 GSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARI-ETKGEN-INITWS  115 (313)
T ss_pred             cccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEe-eccCcc-eEEEEc
Confidence            4578889999888778888888999999999999998 5679999999999999999999999888 333344 457899


Q ss_pred             cCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCC
Q 004468          103 PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSS  182 (751)
Q Consensus       103 p~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~  182 (751)
                      |+  |.+++.++.|..|...|.++.          +..... .....+..++|+. ..++|+....-|+|.|...-.-++
T Consensus       116 p~--g~~~~~~~kdD~it~id~r~~----------~~~~~~-~~~~e~ne~~w~~-~nd~Fflt~GlG~v~ILsypsLkp  181 (313)
T KOG1407|consen  116 PD--GEYIAVGNKDDRITFIDARTY----------KIVNEE-QFKFEVNEISWNN-SNDLFFLTNGLGCVEILSYPSLKP  181 (313)
T ss_pred             CC--CCEEEEecCcccEEEEEeccc----------ceeehh-cccceeeeeeecC-CCCEEEEecCCceEEEEecccccc
Confidence            99  899999999999999999863          222222 2345677889985 456666666669998887654332


Q ss_pred             CCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCC
Q 004468          183 CPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPP  262 (751)
Q Consensus       183 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~  262 (751)
                                               +.....|.....||.|+| +++++++|+.|..+.+||+..+-             
T Consensus       182 -------------------------v~si~AH~snCicI~f~p-~GryfA~GsADAlvSLWD~~ELi-------------  222 (313)
T KOG1407|consen  182 -------------------------VQSIKAHPSNCICIEFDP-DGRYFATGSADALVSLWDVDELI-------------  222 (313)
T ss_pred             -------------------------ccccccCCcceEEEEECC-CCceEeeccccceeeccChhHhh-------------
Confidence                                     233344778889999999 58999999999999999998764             


Q ss_pred             ccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcceeeeecCCCceeEEeCCCCCCcccCCCc
Q 004468          263 CVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPI  342 (751)
Q Consensus       263 ~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~  342 (751)
                      |++.+.        ....+|..+.||.||++|++++.|..|-|=++.+|. ......+..+...++|+|...-++++...
T Consensus       223 C~R~is--------RldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd-~~~eI~~~~~t~tVAWHPk~~LLAyA~dd  293 (313)
T KOG1407|consen  223 CERCIS--------RLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGD-RVWEIPCEGPTFTVAWHPKRPLLAYACDD  293 (313)
T ss_pred             hheeec--------cccCceEEEEeccCcceeeccCccceEEeEecccCC-eEEEeeccCCceeEEecCCCceeeEEecC
Confidence            444442        224479999999999999999999999999999964 55566778889999999999999888765


Q ss_pred             cc
Q 004468          343 HD  344 (751)
Q Consensus       343 ~~  344 (751)
                      ..
T Consensus       294 k~  295 (313)
T KOG1407|consen  294 KD  295 (313)
T ss_pred             CC
Confidence            43

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.86  E-value=1.1e-20  Score=195.35  Aligned_cols=271  Identities=14%  Similarity=0.187  Sum_probs=192.3

Q ss_pred             cccccccccchh--hhccccccEEecc-CCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEe-----------c
Q 004468           24 PDVNHSLQMHSS--LVRRLSQERELEG-HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSI-----------E   89 (751)
Q Consensus        24 ~~~~~~l~~~~~--~i~~~~~~~~L~g-H~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l-----------~   89 (751)
                      ..++..+++|+-  .-.+++-.+.|.. ....|+.++|++.|..|+..+....++|+|-.....+...           -
T Consensus       185 Gs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nT  264 (641)
T KOG0772|consen  185 GSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNT  264 (641)
T ss_pred             ccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhcc
Confidence            356777788764  2333333333332 2347999999999998888888889999996533322222           1


Q ss_pred             ccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceee-----cccCCceeEEEEecCCCCEEE
Q 004468           90 TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALY-----QCHTRRVKKLAVEVGNPHVVW  164 (751)
Q Consensus        90 ~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~-----~~h~~~V~~l~~sp~~~~~l~  164 (751)
                      +||...++|.+|+|.+ -..|+||+.||++||||+......         ++++     .+-.-.|+.++|++ ++.+|+
T Consensus       265 KGHia~lt~g~whP~~-k~~FlT~s~DgtlRiWdv~~~k~q---------~qVik~k~~~g~Rv~~tsC~~nr-dg~~iA  333 (641)
T KOG0772|consen  265 KGHIAELTCGCWHPDN-KEEFLTCSYDGTLRIWDVNNTKSQ---------LQVIKTKPAGGKRVPVTSCAWNR-DGKLIA  333 (641)
T ss_pred             CCceeeeeccccccCc-ccceEEecCCCcEEEEecCCchhh---------eeEEeeccCCCcccCceeeecCC-Ccchhh
Confidence            5899999999999997 678999999999999999864321         2222     23456789999999 678899


Q ss_pred             EEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEe
Q 004468          165 SASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYD  244 (751)
Q Consensus       165 s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD  244 (751)
                      +|..||+|.+||.+....-+          ..          .+.........|+||.|++ ++++|++-+.|.++++||
T Consensus       334 agc~DGSIQ~W~~~~~~v~p----------~~----------~vk~AH~~g~~Itsi~FS~-dg~~LlSRg~D~tLKvWD  392 (641)
T KOG0772|consen  334 AGCLDGSIQIWDKGSRTVRP----------VM----------KVKDAHLPGQDITSISFSY-DGNYLLSRGFDDTLKVWD  392 (641)
T ss_pred             hcccCCceeeeecCCccccc----------ce----------EeeeccCCCCceeEEEecc-ccchhhhccCCCceeeee
Confidence            99999999999986543110          00          1111111234899999999 589999999999999999


Q ss_pred             CCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeC------CCcEEEEECCCCCcceeee
Q 004468          245 RRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS------GEHVYLMDVNHAGGRAMRY  318 (751)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~------d~~I~lwdl~~~~~~~~~~  318 (751)
                      +|..+.            ++..+..      -...++-+.++|||+.+.|++|++      .+.+++||..+-.......
T Consensus       393 Lrq~kk------------pL~~~tg------L~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~  454 (641)
T KOG0772|consen  393 LRQFKK------------PLNVRTG------LPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKID  454 (641)
T ss_pred             cccccc------------chhhhcC------CCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEec
Confidence            997652            1111110      011234688999999999999976      4689999988855444444


Q ss_pred             ecCCCceeEEeCCCCCCcccCCCccc
Q 004468          319 TVGDASKIMSFTPTLNGLELQPPIHD  344 (751)
Q Consensus       319 ~~~~~~~~~~~sp~~~~~~~~~~~~~  344 (751)
                      .....+..+.|+|.+|.+......+.
T Consensus       455 i~~aSvv~~~WhpkLNQi~~gsgdG~  480 (641)
T KOG0772|consen  455 ISTASVVRCLWHPKLNQIFAGSGDGT  480 (641)
T ss_pred             CCCceEEEEeecchhhheeeecCCCc
Confidence            44556667889999999987766544

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.86  E-value=4.3e-21  Score=203.42  Aligned_cols=252  Identities=19%  Similarity=0.218  Sum_probs=198.2

Q ss_pred             ccccccchhhhcccc----ccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCC--eEEEEecccCCcceEEEE
Q 004468           27 NHSLQMHSSLVRRLS----QERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSR--KLLHSIETGHSANVFCTK  100 (751)
Q Consensus        27 ~~~l~~~~~~i~~~~----~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~--~~~~~l~~~h~~~V~~v~  100 (751)
                      +..++.|+.-...-.    .+..++.|.+-|+.+....+|+.|+|+|.|.+|++|+...+  .+..++ ..|+..|.|++
T Consensus        46 Dg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~sti-r~H~DYVkcla  124 (735)
T KOG0308|consen   46 DGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTI-RTHKDYVKCLA  124 (735)
T ss_pred             CceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhh-hcccchheeee
Confidence            445666665444332    47788999999999999999999999999999999998866  566777 78999999999


Q ss_pred             E-ecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeec-ccCCceeEEEEecCCCCEEEEEeCCCcEEEEecC
Q 004468          101 F-VPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQ-CHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFR  178 (751)
Q Consensus       101 f-sp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr  178 (751)
                      . -++  ..++||||-|+.|.|||+..+........+......+. ++...|++++.++ .+..|++|+..+.|++||.|
T Consensus       125 ~~ak~--~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~-t~t~ivsGgtek~lr~wDpr  201 (735)
T KOG0308|consen  125 YIAKN--NELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQ-TGTIIVSGGTEKDLRLWDPR  201 (735)
T ss_pred             ecccC--ceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCC-cceEEEecCcccceEEeccc
Confidence            9 555  68999999999999999997644222222222333344 8999999999998 66899999999999999999


Q ss_pred             CCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCC
Q 004468          179 QGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRM  258 (751)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~  258 (751)
                      +.+..                         ....+|...|.++-+++ ++..+++++.||+||+||++-..         
T Consensus       202 t~~ki-------------------------mkLrGHTdNVr~ll~~d-DGt~~ls~sSDgtIrlWdLgqQr---------  246 (735)
T KOG0308|consen  202 TCKKI-------------------------MKLRGHTDNVRVLLVND-DGTRLLSASSDGTIRLWDLGQQR---------  246 (735)
T ss_pred             cccce-------------------------eeeeccccceEEEEEcC-CCCeEeecCCCceEEeeeccccc---------
Confidence            98643                         22235889999999999 58999999999999999998654         


Q ss_pred             CCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcceeeeecCCCceeEEe
Q 004468          259 SPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSF  329 (751)
Q Consensus       259 ~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~~~~~~~~~~~~~~  329 (751)
                          |+..+       .-|.. .|+++..+|+-.++++|+.|+.|+.=|+.+.......+...+++..+..
T Consensus       247 ----Cl~T~-------~vH~e-~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~  305 (735)
T KOG0308|consen  247 ----CLATY-------IVHKE-GVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHL  305 (735)
T ss_pred             ----eeeeE-------EeccC-ceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecCCCchhhhhh
Confidence                44443       23444 3999999999999999999999999999996555555555444443333

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.86  E-value=7.4e-20  Score=178.95  Aligned_cols=175  Identities=15%  Similarity=0.179  Sum_probs=125.1

Q ss_pred             ccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCC
Q 004468           90 TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED  169 (751)
Q Consensus        90 ~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~D  169 (751)
                      ++|.++|++++|+.+  |++|+|++.|++|+||+++....+.-     ++++.-. --+..+.+.|+|+...+++++...
T Consensus        83 KgH~~~vt~~~FsSd--GK~lat~~~Dr~Ir~w~~~DF~~~eH-----r~~R~nv-e~dhpT~V~FapDc~s~vv~~~~g  154 (420)
T KOG2096|consen   83 KGHKKEVTDVAFSSD--GKKLATISGDRSIRLWDVRDFENKEH-----RCIRQNV-EYDHPTRVVFAPDCKSVVVSVKRG  154 (420)
T ss_pred             hccCCceeeeEEcCC--CceeEEEeCCceEEEEecchhhhhhh-----hHhhccc-cCCCceEEEECCCcceEEEEEccC
Confidence            799999999999999  89999999999999999986432211     1121111 123567899999888888888888


Q ss_pred             CcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCC
Q 004468          170 GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP  249 (751)
Q Consensus       170 g~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~  249 (751)
                      .++++|.+...+.-      ......+-++       .+.+...|...+..+-+.. ++.+|++++.|..|.||+++ ++
T Consensus       155 ~~l~vyk~~K~~dG------~~~~~~v~~D-------~~~f~~kh~v~~i~iGiA~-~~k~imsas~dt~i~lw~lk-Gq  219 (420)
T KOG2096|consen  155 NKLCVYKLVKKTDG------SGSHHFVHID-------NLEFERKHQVDIINIGIAG-NAKYIMSASLDTKICLWDLK-GQ  219 (420)
T ss_pred             CEEEEEEeeecccC------CCCccccccc-------ccccchhcccceEEEeecC-CceEEEEecCCCcEEEEecC-Cc
Confidence            89999988765421      0000111111       1223445677777777776 57899999999999999998 55


Q ss_pred             CccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004468          250 PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDV  308 (751)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl  308 (751)
                      .+..+...                     ...-+..+.||+|++|++++----|++|.+
T Consensus       220 ~L~~idtn---------------------q~~n~~aavSP~GRFia~~gFTpDVkVwE~  257 (420)
T KOG2096|consen  220 LLQSIDTN---------------------QSSNYDAAVSPDGRFIAVSGFTPDVKVWEP  257 (420)
T ss_pred             eeeeeccc---------------------cccccceeeCCCCcEEEEecCCCCceEEEE
Confidence            44433211                     112467899999999999998888999974

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.86  E-value=1.3e-20  Score=201.94  Aligned_cols=223  Identities=22%  Similarity=0.292  Sum_probs=183.7

Q ss_pred             cccccccchhhhccccccEEecc-CCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecC
Q 004468           26 VNHSLQMHSSLVRRLSQERELEG-HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPE  104 (751)
Q Consensus        26 ~~~~l~~~~~~i~~~~~~~~L~g-H~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~  104 (751)
                      .+..+++|+  +.+.+.+.++.+ |...|-+|+|+  +..|.+|+.|+.|.++|+...+.......+|...|..++|+++
T Consensus       237 ~~g~v~iwD--~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d  312 (484)
T KOG0305|consen  237 SDGTVQIWD--VKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPD  312 (484)
T ss_pred             cCCeEEEEe--hhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCC
Confidence            456777777  445567788888 99999999999  7789999999999999998776555533899999999999999


Q ss_pred             CCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEe--CCCcEEEEecCCCCC
Q 004468          105 TSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSAS--EDGTLRQHDFRQGSS  182 (751)
Q Consensus       105 s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s--~Dg~I~iwDlr~~~~  182 (751)
                        +.++|+|+.|+.|.|||....          +++..+..|...|+.++|+|-.+.+||+|+  .|++|++||+.++..
T Consensus       313 --~~~lASGgnDN~~~Iwd~~~~----------~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~  380 (484)
T KOG0305|consen  313 --GNQLASGGNDNVVFIWDGLSP----------EPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGAR  380 (484)
T ss_pred             --CCeeccCCCccceEeccCCCc----------cccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcE
Confidence              899999999999999999543          678899999999999999998888999975  699999999998874


Q ss_pred             CCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEE-EeCCCeEEEEeCCCCCCccccCCCCCCC
Q 004468          183 CPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLV-GGSDAFARLYDRRMLPPLTSCQKRMSPP  261 (751)
Q Consensus       183 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~s-gs~D~~IriwD~~~~~~~~~~~~~~~~~  261 (751)
                      +...                          .....|.++.|++...+++.+ |-.+..|.||+..+.+.+..+       
T Consensus       381 i~~v--------------------------dtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l-------  427 (484)
T KOG0305|consen  381 IDSV--------------------------DTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAEL-------  427 (484)
T ss_pred             eccc--------------------------ccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeee-------
Confidence            3211                          124578999999964334443 446789999999876654433       


Q ss_pred             CccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 004468          262 PCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (751)
Q Consensus       262 ~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~  311 (751)
                                   .||.. .|..+++||||..|++++.|+++++|++-..
T Consensus       428 -------------~gH~~-RVl~la~SPdg~~i~t~a~DETlrfw~~f~~  463 (484)
T KOG0305|consen  428 -------------LGHTS-RVLYLALSPDGETIVTGAADETLRFWNLFDE  463 (484)
T ss_pred             -------------cCCcc-eeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence                         45666 5999999999999999999999999999884

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.85  E-value=2.6e-19  Score=176.13  Aligned_cols=257  Identities=17%  Similarity=0.177  Sum_probs=195.2

Q ss_pred             cccccchhhhccccccEEeccCCCcEEEEEECCCCCEEEEEeC--CCcEEEEeCCCCeEEEEecccCCcceEEEEEecCC
Q 004468           28 HSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSD--DTHINVWSYSSRKLLHSIETGHSANVFCTKFVPET  105 (751)
Q Consensus        28 ~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~--Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s  105 (751)
                      ..|++++  ..+.++.+++.-++-.|..++|....+.++.++.  |.+|+.-++.+.+.+..+ .||...|++++.+|- 
T Consensus        36 Dsl~LYd--~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylRYF-~GH~~~V~sL~~sP~-  111 (311)
T KOG1446|consen   36 DSLRLYD--SLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRYF-PGHKKRVNSLSVSPK-  111 (311)
T ss_pred             CeEEEEE--cCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCceEEEc-CCCCceEEEEEecCC-
Confidence            4556655  3456688888889999999999988887777776  899999999999999999 899999999999999 


Q ss_pred             CCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCC
Q 004468          106 SDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPP  185 (751)
Q Consensus       106 ~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~  185 (751)
                       ++.++|++.|++|++||++..          ++...+.  ...-..++|.| .|-+||++.....|++||+|.-..-+.
T Consensus       112 -~d~FlS~S~D~tvrLWDlR~~----------~cqg~l~--~~~~pi~AfDp-~GLifA~~~~~~~IkLyD~Rs~dkgPF  177 (311)
T KOG1446|consen  112 -DDTFLSSSLDKTVRLWDLRVK----------KCQGLLN--LSGRPIAAFDP-EGLIFALANGSELIKLYDLRSFDKGPF  177 (311)
T ss_pred             -CCeEEecccCCeEEeeEecCC----------CCceEEe--cCCCcceeECC-CCcEEEEecCCCeEEEEEecccCCCCc
Confidence             799999999999999999964          2233332  22233578999 668888888877999999998642111


Q ss_pred             CCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccc
Q 004468          186 AGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVN  265 (751)
Q Consensus       186 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~  265 (751)
                                          ..+..........+.+.|+| +|++|+.+...+.+++.|.-.+....++....       
T Consensus       178 --------------------~tf~i~~~~~~ew~~l~FS~-dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~-------  229 (311)
T KOG1446|consen  178 --------------------TTFSITDNDEAEWTDLEFSP-DGKSILLSTNASFIYLLDAFDGTVKSTFSGYP-------  229 (311)
T ss_pred             --------------------eeEccCCCCccceeeeEEcC-CCCEEEEEeCCCcEEEEEccCCcEeeeEeecc-------
Confidence                                01111112456789999999 58999999999999999998887544432110       


Q ss_pred             cccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcceeeee-cCCCceeEEeCCCCCCcccCCC
Q 004468          266 YFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYT-VGDASKIMSFTPTLNGLELQPP  341 (751)
Q Consensus       266 ~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~~~~-~~~~~~~~~~sp~~~~~~~~~~  341 (751)
                                ..... --+.+|+||++++++|+.||+|++|+++++.+.....+ .......+.|+|.....+.+..
T Consensus       230 ----------~~~~~-~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~s  295 (311)
T KOG1446|consen  230 ----------NAGNL-PLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSASS  295 (311)
T ss_pred             ----------CCCCc-ceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecCc
Confidence                      00111 24678999999999999999999999999877766666 3667777778887655544433

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.85  E-value=4.4e-19  Score=183.05  Aligned_cols=270  Identities=16%  Similarity=0.203  Sum_probs=184.2

Q ss_pred             cEEeccCCCcEEEEEECCCCCEEEEEeCCC--------cEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEE-
Q 004468           43 ERELEGHQGCVNAISWNSKGSLLISGSDDT--------HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSG-  113 (751)
Q Consensus        43 ~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg--------~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sg-  113 (751)
                      .+.+-||+..|.|+..+|+--++|+|-.-|        .|+|||..+-..++.+ ......|.||+|++.+.|.+|+.- 
T Consensus        97 Qr~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~-g~f~~GV~~vaFsk~~~G~~l~~vD  175 (626)
T KOG2106|consen   97 QRHYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVI-GFFDRGVTCVAFSKINGGSLLCAVD  175 (626)
T ss_pred             cccccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeecccccceeeeee-ccccccceeeeecccCCCceEEEec
Confidence            455779999999999999999999886655        4999998888778877 466778999999998767777654 


Q ss_pred             -ECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCC-----
Q 004468          114 -AGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAG-----  187 (751)
Q Consensus       114 -s~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~-----  187 (751)
                       +.+..+.|||....          ......++-+..|....|+|.+++++++++. |.+.+|+++.+.......     
T Consensus       176 ~s~~h~lSVWdWqk~----------~~~~~vk~sne~v~~a~FHPtd~nliit~Gk-~H~~Fw~~~~~~l~k~~~~fek~  244 (626)
T KOG2106|consen  176 DSNPHMLSVWDWQKK----------AKLGPVKTSNEVVFLATFHPTDPNLIITCGK-GHLYFWTLRGGSLVKRQGIFEKR  244 (626)
T ss_pred             CCCccccchhhchhh----------hccCcceeccceEEEEEeccCCCcEEEEeCC-ceEEEEEccCCceEEEeeccccc
Confidence             45678899999864          2244455567788899999999999988887 789999998875442221     


Q ss_pred             -----------------CCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCC
Q 004468          188 -----------------SSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPP  250 (751)
Q Consensus       188 -----------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~  250 (751)
                                       .++......+|+........ .. ..|...|.++..-.+ + .|++|+.|..|..|| ...++
T Consensus       245 ekk~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~~k-~~-~aH~ggv~~L~~lr~-G-tllSGgKDRki~~Wd-~~y~k  319 (626)
T KOG2106|consen  245 EKKFVLCVTFLENGDVITGDSGGNILIWSKGTNRISK-QV-HAHDGGVFSLCMLRD-G-TLLSGGKDRKIILWD-DNYRK  319 (626)
T ss_pred             cceEEEEEEEcCCCCEEeecCCceEEEEeCCCceEEe-Ee-eecCCceEEEEEecC-c-cEeecCccceEEecc-ccccc
Confidence                             12222333344443222211 11 268888999998874 4 566699999999999 44443


Q ss_pred             ccccCCC--CCCCCcccccc-------------cc------ccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 004468          251 LTSCQKR--MSPPPCVNYFC-------------PM------HLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVN  309 (751)
Q Consensus       251 ~~~~~~~--~~~~~~~~~~~-------------~~------~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~  309 (751)
                      +...+.+  ..+++.+..-.             .+      .+...||.. ....++.+|+.+.+++++.|++++||+  
T Consensus       320 ~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~d-elwgla~hps~~q~~T~gqdk~v~lW~--  396 (626)
T KOG2106|consen  320 LRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGD-ELWGLATHPSKNQLLTCGQDKHVRLWN--  396 (626)
T ss_pred             cccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEeccc-ceeeEEcCCChhheeeccCcceEEEcc--
Confidence            3322211  11111110000             00      011134555 588999999999999999999999999  


Q ss_pred             CCCcceeeeecCCCceeEEeCCCC
Q 004468          310 HAGGRAMRYTVGDASKIMSFTPTL  333 (751)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~sp~~  333 (751)
                       ..+.........+.....|+|..
T Consensus       397 -~~k~~wt~~~~d~~~~~~fhpsg  419 (626)
T KOG2106|consen  397 -DHKLEWTKIIEDPAECADFHPSG  419 (626)
T ss_pred             -CCceeEEEEecCceeEeeccCcc
Confidence             23344444556667777777754

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.85  E-value=1.4e-19  Score=176.97  Aligned_cols=265  Identities=14%  Similarity=0.120  Sum_probs=190.0

Q ss_pred             CCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCC
Q 004468           50 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSG  129 (751)
Q Consensus        50 ~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~  129 (751)
                      .+.|..|.|+|.++.|+.+++||.+++||+........+  .|..++.+++|.++   ..+++|+.||.|+++|+.++. 
T Consensus        13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~--~~~~plL~c~F~d~---~~~~~G~~dg~vr~~Dln~~~-   86 (323)
T KOG1036|consen   13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKF--KHGAPLLDCAFADE---STIVTGGLDGQVRRYDLNTGN-   86 (323)
T ss_pred             hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhe--ecCCceeeeeccCC---ceEEEeccCceEEEEEecCCc-
Confidence            678999999999999999999999999999877665555  58999999999986   689999999999999999753 


Q ss_pred             CCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCC----------------CCCcc
Q 004468          130 RGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGS----------------SHQEC  193 (751)
Q Consensus       130 ~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~----------------~~~~~  193 (751)
                                ...+..|...|.+|.+++ ....+++||.|++|++||.|..........                +..+.
T Consensus        87 ----------~~~igth~~~i~ci~~~~-~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~g~~LvVg~~~r  155 (323)
T KOG1036|consen   87 ----------EDQIGTHDEGIRCIEYSY-EVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDVSGNRLVVGTSDR  155 (323)
T ss_pred             ----------ceeeccCCCceEEEEeec-cCCeEEEcccCccEEEEeccccccccccccCceEEEEeccCCEEEEeecCc
Confidence                      456677999999999998 556788999999999999996332211111                11122


Q ss_pred             ceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccc
Q 004468          194 RNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLS  273 (751)
Q Consensus       194 ~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (751)
                      ...+|+++.-...........+..+.|+++.| .+.=+++++.||.|.+=.+...+...+   ....-+|.+...     
T Consensus       156 ~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~p-n~eGy~~sSieGRVavE~~d~s~~~~s---kkyaFkCHr~~~-----  226 (323)
T KOG1036|consen  156 KVLIYDLRNLDEPFQRRESSLKYQTRCVALVP-NGEGYVVSSIEGRVAVEYFDDSEEAQS---KKYAFKCHRLSE-----  226 (323)
T ss_pred             eEEEEEcccccchhhhccccceeEEEEEEEec-CCCceEEEeecceEEEEccCCchHHhh---hceeEEeeeccc-----
Confidence            23455655433322222334567889999999 467788899999998765554321111   000011111110     


Q ss_pred             cCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcceeeeecCCCceeEEeCCCCCCcccCC
Q 004468          274 EHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQP  340 (751)
Q Consensus       274 ~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~  340 (751)
                      ......++|++++|+|-...|++|+.||.|.+||+.+.+....+..-...+..++|+-++..++.+.
T Consensus       227 ~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~  293 (323)
T KOG1036|consen  227 KDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIAS  293 (323)
T ss_pred             CCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEe
Confidence            0111235799999999999999999999999999999655444444455677788888777666554

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.85  E-value=2.2e-19  Score=175.21  Aligned_cols=259  Identities=16%  Similarity=0.228  Sum_probs=178.9

Q ss_pred             ccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCC----eEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEE
Q 004468           47 EGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSR----KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLF  122 (751)
Q Consensus        47 ~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~----~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vw  122 (751)
                      .+|.+-|+|+.|.+.|+++||||.|++|+|||..+.    .+.... ..|.+.|..|.|.+..-|+.+|+|+.|++|.||
T Consensus        10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~W-rah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iW   88 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSW-RAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIW   88 (361)
T ss_pred             cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeE-EecCCcEEEEEecCccccceEEEEecCCceeee
Confidence            589999999999999999999999999999996432    344455 789999999999877669999999999999999


Q ss_pred             ECCCCCCCCCCCCCCCCceeecccCCceeEEEEecC-CCCEEEEEeCCCcEEEEecCCCCCCC-------------CCCC
Q 004468          123 NLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVG-NPHVVWSASEDGTLRQHDFRQGSSCP-------------PAGS  188 (751)
Q Consensus       123 d~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~-~~~~l~s~s~Dg~I~iwDlr~~~~~~-------------~~~~  188 (751)
                      .-...+..+ .........++......|+++.|.|. -+-.+++++.||++|||+.-..-.+.             +...
T Consensus        89 EE~~~~~~~-~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~  167 (361)
T KOG2445|consen   89 EEQEKSEEA-HGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGK  167 (361)
T ss_pred             eeccccccc-ccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccc
Confidence            874221111 00112345667778899999999983 34579999999999999876543220             0000


Q ss_pred             CCCcc---------------------------ceEEEecccC--ceecccCCCCCccceEEEEEeCCCC---cEEEEEeC
Q 004468          189 SHQEC---------------------------RNILLDLRCG--AKRSLADPPKQTLSLKSCDISSTRP---HLLLVGGS  236 (751)
Q Consensus       189 ~~~~~---------------------------~~~l~~~~~~--~~~~~~~~~~~~~~v~~i~~sp~~~---~~l~sgs~  236 (751)
                      .+..|                           ..+++....+  +...+...+++..+|++++|.|.-+   ++|++++.
T Consensus       168 ~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~k  247 (361)
T KOG2445|consen  168 NKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATK  247 (361)
T ss_pred             ccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeec
Confidence            11111                           1223332222  2345666778999999999999644   58999999


Q ss_pred             CCeEEEEeCCCCC-CccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004468          237 DAFARLYDRRMLP-PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (751)
Q Consensus       237 D~~IriwD~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~  310 (751)
                      || |+||.+.... ++.  +.....+.....+....+...+.+.+.|..+.|+-.|..|.+.+.||.|++|..+-
T Consensus       248 Dg-v~I~~v~~~~s~i~--~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany  319 (361)
T KOG2445|consen  248 DG-VRIFKVKVARSAIE--EEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANY  319 (361)
T ss_pred             Cc-EEEEEEeeccchhh--hhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhh
Confidence            99 9999998432 110  11111111111121112222223334799999999999999999999999997654

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.85  E-value=2.3e-19  Score=188.53  Aligned_cols=217  Identities=18%  Similarity=0.265  Sum_probs=156.2

Q ss_pred             ccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEE
Q 004468           42 QERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRL  121 (751)
Q Consensus        42 ~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~v  121 (751)
                      +...++||++.|.||...|.|.+||+|+.||+|+||.+.+|.++.++.  ..+.|.||+|+|.++ .-|+.++....+.|
T Consensus       392 ~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~--~d~~I~~vaw~P~~~-~~vLAvA~~~~~~i  468 (733)
T KOG0650|consen  392 CALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ--FDSEIRSVAWNPLSD-LCVLAVAVGECVLI  468 (733)
T ss_pred             eeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe--ecceeEEEEecCCCC-ceeEEEEecCceEE
Confidence            456789999999999999999999999999999999999999999883  456899999999974 44444444455766


Q ss_pred             EECCCCCCCC-------C-CC-CC------------------CCCceeecccCCceeEEEEecCCCCEEEEEeCC---Cc
Q 004468          122 FNLSRFSGRG-------L-DD-NA------------------ITPSALYQCHTRRVKKLAVEVGNPHVVWSASED---GT  171 (751)
Q Consensus       122 wd~~~~~~~~-------~-~~-~~------------------~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~D---g~  171 (751)
                      -+..-+....       + .. +.                  ..-++..-.|...|+.|.|+- .|.+|++..-+   ..
T Consensus       469 vnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHr-kGDYlatV~~~~~~~~  547 (733)
T KOG0650|consen  469 VNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHR-KGDYLATVMPDSGNKS  547 (733)
T ss_pred             eCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeec-CCceEEEeccCCCcce
Confidence            6655431100       0 00 00                  011234456889999999998 67888876554   46


Q ss_pred             EEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCc
Q 004468          172 LRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPL  251 (751)
Q Consensus       172 I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~  251 (751)
                      |.|+++......                         .-+....+.|.++.|+|.. .+|++++ -..|||||+.....+
T Consensus       548 VliHQLSK~~sQ-------------------------~PF~kskG~vq~v~FHPs~-p~lfVaT-q~~vRiYdL~kqelv  600 (733)
T KOG0650|consen  548 VLIHQLSKRKSQ-------------------------SPFRKSKGLVQRVKFHPSK-PYLFVAT-QRSVRIYDLSKQELV  600 (733)
T ss_pred             EEEEeccccccc-------------------------CchhhcCCceeEEEecCCC-ceEEEEe-ccceEEEehhHHHHH
Confidence            888888765422                         1111245678899999975 4555544 367999999865433


Q ss_pred             cccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004468          252 TSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (751)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~  310 (751)
                      .++.             +      |  ..+|.+++.+|.|..|++++.|+.+..||+.-
T Consensus       601 KkL~-------------t------g--~kwiS~msihp~GDnli~gs~d~k~~WfDldl  638 (733)
T KOG0650|consen  601 KKLL-------------T------G--SKWISSMSIHPNGDNLILGSYDKKMCWFDLDL  638 (733)
T ss_pred             HHHh-------------c------C--CeeeeeeeecCCCCeEEEecCCCeeEEEEccc
Confidence            2221             1      0  12699999999999999999999999999877

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.85  E-value=2.4e-20  Score=199.36  Aligned_cols=202  Identities=27%  Similarity=0.417  Sum_probs=167.6

Q ss_pred             hccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECC
Q 004468           37 VRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD  116 (751)
Q Consensus        37 i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~D  116 (751)
                      .....+..+|+||+..|.|+....++. |+|||.|.+++||-..  ++...+ .+|+..|+++++.|+   +.++|||.|
T Consensus        88 ~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~--~l~~~l-~gH~asVWAv~~l~e---~~~vTgsaD  160 (745)
T KOG0301|consen   88 LSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIG--ELVYSL-QGHTASVWAVASLPE---NTYVTGSAD  160 (745)
T ss_pred             cCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecch--hhhccc-CCcchheeeeeecCC---CcEEeccCc
Confidence            445678899999999999999998888 9999999999999864  445556 899999999999998   499999999


Q ss_pred             CcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceE
Q 004468          117 AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNI  196 (751)
Q Consensus       117 g~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~  196 (751)
                      .+|++|.-.            +.+++|.+|++.|+.+++-+ + ..|+||+.||.|+.|++. +..              
T Consensus       161 KtIklWk~~------------~~l~tf~gHtD~VRgL~vl~-~-~~flScsNDg~Ir~w~~~-ge~--------------  211 (745)
T KOG0301|consen  161 KTIKLWKGG------------TLLKTFSGHTDCVRGLAVLD-D-SHFLSCSNDGSIRLWDLD-GEV--------------  211 (745)
T ss_pred             ceeeeccCC------------chhhhhccchhheeeeEEec-C-CCeEeecCCceEEEEecc-Cce--------------
Confidence            999999876            55899999999999999998 4 346699999999999994 331              


Q ss_pred             EEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCC
Q 004468          197 LLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHG  276 (751)
Q Consensus       197 l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  276 (751)
                                 +....+|...|++++..+. ...+++++.|+++|||+...               |++..        .
T Consensus       212 -----------l~~~~ghtn~vYsis~~~~-~~~Ivs~gEDrtlriW~~~e---------------~~q~I--------~  256 (745)
T KOG0301|consen  212 -----------LLEMHGHTNFVYSISMALS-DGLIVSTGEDRTLRIWKKDE---------------CVQVI--------T  256 (745)
T ss_pred             -----------eeeeeccceEEEEEEecCC-CCeEEEecCCceEEEeecCc---------------eEEEE--------e
Confidence                       3344568889999997774 57999999999999999762               33322        1


Q ss_pred             ccccceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004468          277 RSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (751)
Q Consensus       277 ~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~  310 (751)
                      ++...|+++++-++|. |++|++||.||||....
T Consensus       257 lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k  289 (745)
T KOG0301|consen  257 LPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVDK  289 (745)
T ss_pred             cCccceEEEEEeeCCC-EEEeccCceEEEEEecc
Confidence            2233589999999998 68999999999998775

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.84  E-value=1.2e-20  Score=203.86  Aligned_cols=218  Identities=17%  Similarity=0.222  Sum_probs=177.2

Q ss_pred             cccccEEeccCCCcEEEEEECC-CCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCC
Q 004468           39 RLSQERELEGHQGCVNAISWNS-KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA  117 (751)
Q Consensus        39 ~~~~~~~L~gH~~~V~~l~~s~-dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg  117 (751)
                      +-+++..|..|+..|+++.|++ ...+|+|||.||+|++||+...+...++ .+....|.+|+|+|.. +.+|+++...|
T Consensus       122 rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~-~~nSESiRDV~fsp~~-~~~F~s~~dsG  199 (839)
T KOG0269|consen  122 RNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTF-RSNSESIRDVKFSPGY-GNKFASIHDSG  199 (839)
T ss_pred             cchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccc-cccchhhhceeeccCC-CceEEEecCCc
Confidence            4567788999999999999998 4579999999999999999988888777 6788999999999987 89999999999


Q ss_pred             cEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEE
Q 004468          118 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNIL  197 (751)
Q Consensus       118 ~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l  197 (751)
                      .+++||++...         ++...+..|+++|.++.|+| ++.+|||||.|++|+|||+.+++.-.         ...+
T Consensus       200 ~lqlWDlRqp~---------r~~~k~~AH~GpV~c~nwhP-nr~~lATGGRDK~vkiWd~t~~~~~~---------~~tI  260 (839)
T KOG0269|consen  200 YLQLWDLRQPD---------RCEKKLTAHNGPVLCLNWHP-NREWLATGGRDKMVKIWDMTDSRAKP---------KHTI  260 (839)
T ss_pred             eEEEeeccCch---------hHHHHhhcccCceEEEeecC-CCceeeecCCCccEEEEeccCCCccc---------eeEE
Confidence            99999999753         56778899999999999999 88999999999999999998765221         0111


Q ss_pred             EecccCceecccCCCCCccceEEEEEeCCCCcEEEEEe--CCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccC
Q 004468          198 LDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGG--SDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEH  275 (751)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs--~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (751)
                       +              ...+|.++.|-|...+.|++++  .|..|+|||++..                  |.|.+... 
T Consensus       261 -n--------------Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRP------------------YIP~~t~~-  306 (839)
T KOG0269|consen  261 -N--------------TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRP------------------YIPYATFL-  306 (839)
T ss_pred             -e--------------ecceeeeeeeccCccchhhhhhccccceEEEEeeccc------------------cccceeee-
Confidence             0              2467999999998888898886  5889999999842                  33333322 


Q ss_pred             CccccceEEEEEcC-CCCEEEEEeCCCcEEEEECCCCC
Q 004468          276 GRSSLHLTHVTFSP-NGEEVLLSYSGEHVYLMDVNHAG  312 (751)
Q Consensus       276 g~~~~~vt~v~fsp-dg~~Ll~~s~d~~I~lwdl~~~~  312 (751)
                      -|.. .++.++|.. |-..|.+++.|+.|..-.+++..
T Consensus       307 eH~~-~vt~i~W~~~d~~~l~s~sKD~tv~qh~~knat  343 (839)
T KOG0269|consen  307 EHTD-SVTGIAWDSGDRINLWSCSKDGTVLQHLFKNAT  343 (839)
T ss_pred             ccCc-cccceeccCCCceeeEeecCccHHHHhhhhccc
Confidence            2444 488999987 44567788889998887777643

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.84  E-value=3.8e-19  Score=173.59  Aligned_cols=140  Identities=15%  Similarity=0.160  Sum_probs=105.7

Q ss_pred             EEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEe-cCCCCEEE
Q 004468           86 HSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVE-VGNPHVVW  164 (751)
Q Consensus        86 ~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s-p~~~~~l~  164 (751)
                      ..|..+|.+-|.|+.|.+.  |+.+|||+.|++|+|||.+..++.      ..+....++|.+.|..|.|. |.=|+.++
T Consensus         6 ~pi~s~h~DlihdVs~D~~--GRRmAtCSsDq~vkI~d~~~~s~~------W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA   77 (361)
T KOG2445|consen    6 APIDSGHKDLIHDVSFDFY--GRRMATCSSDQTVKIWDSTSDSGT------WSCTSSWRAHDGSIWRVVWAHPEFGQVVA   77 (361)
T ss_pred             cccccCCcceeeeeeeccc--CceeeeccCCCcEEEEeccCCCCc------eEEeeeEEecCCcEEEEEecCccccceEE
Confidence            4455789999999999999  899999999999999998765543      36677889999999999996 55678999


Q ss_pred             EEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCC-CcEEEEEeCCCeEEEE
Q 004468          165 SASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR-PHLLLVGGSDAFARLY  243 (751)
Q Consensus       165 s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~-~~~l~sgs~D~~Iriw  243 (751)
                      +++.|+++.||.=.....         ++...-|       ............|+++.|.|.. +-.|++++.||+||||
T Consensus        78 ~cS~Drtv~iWEE~~~~~---------~~~~~~W-------v~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIY  141 (361)
T KOG2445|consen   78 TCSYDRTVSIWEEQEKSE---------EAHGRRW-------VRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIY  141 (361)
T ss_pred             EEecCCceeeeeeccccc---------cccccee-------EEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEE
Confidence            999999999997432110         0000000       1111222345789999999953 4579999999999999


Q ss_pred             eCCCCC
Q 004468          244 DRRMLP  249 (751)
Q Consensus       244 D~~~~~  249 (751)
                      +.-..-
T Consensus       142 EA~dp~  147 (361)
T KOG2445|consen  142 EAPDPM  147 (361)
T ss_pred             ecCCcc
Confidence            986544

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.84  E-value=2.6e-21  Score=207.23  Aligned_cols=204  Identities=24%  Similarity=0.408  Sum_probs=176.2

Q ss_pred             hhccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEEC
Q 004468           36 LVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG  115 (751)
Q Consensus        36 ~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~  115 (751)
                      -+.+...+..|.+|...|-+|.|+++..+|++|+.||+|++||++..+.++++ .||..++.+|.|+|.  +.++++|+.
T Consensus        56 ~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtL-tgh~~~~~sv~f~P~--~~~~a~gSt  132 (825)
T KOG0267|consen   56 AIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTL-TGHLLNITSVDFHPY--GEFFASGST  132 (825)
T ss_pred             cccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhh-hccccCcceeeeccc--eEEeccccc
Confidence            35555666779999999999999999999999999999999999999999999 999999999999999  899999999


Q ss_pred             CCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccce
Q 004468          116 DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRN  195 (751)
Q Consensus       116 Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~  195 (751)
                      |+.+++||++..          .|.+.+.+|...|..++|+| ++.+++++++|.++++||+..++..            
T Consensus       133 dtd~~iwD~Rk~----------Gc~~~~~s~~~vv~~l~lsP-~Gr~v~~g~ed~tvki~d~~agk~~------------  189 (825)
T KOG0267|consen  133 DTDLKIWDIRKK----------GCSHTYKSHTRVVDVLRLSP-DGRWVASGGEDNTVKIWDLTAGKLS------------  189 (825)
T ss_pred             cccceehhhhcc----------CceeeecCCcceeEEEeecC-CCceeeccCCcceeeeecccccccc------------
Confidence            999999999853          67899999999999999999 7799999999999999999888632            


Q ss_pred             EEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccC
Q 004468          196 ILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEH  275 (751)
Q Consensus       196 ~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (751)
                                   ..+..|...+.++.|+|. ..++++|+.|++|++||+++...+.+..                    
T Consensus       190 -------------~ef~~~e~~v~sle~hp~-e~Lla~Gs~d~tv~f~dletfe~I~s~~--------------------  235 (825)
T KOG0267|consen  190 -------------KEFKSHEGKVQSLEFHPL-EVLLAPGSSDRTVRFWDLETFEVISSGK--------------------  235 (825)
T ss_pred             -------------cccccccccccccccCch-hhhhccCCCCceeeeeccceeEEeeccC--------------------
Confidence                         344557788999999995 6899999999999999999765443221                    


Q ss_pred             CccccceEEEEEcCCCCEEEEEeCC
Q 004468          276 GRSSLHLTHVTFSPNGEEVLLSYSG  300 (751)
Q Consensus       276 g~~~~~vt~v~fspdg~~Ll~~s~d  300 (751)
                       .....|.+++|+|+|..+++|...
T Consensus       236 -~~~~~v~~~~fn~~~~~~~~G~q~  259 (825)
T KOG0267|consen  236 -PETDGVRSLAFNPDGKIVLSGEQI  259 (825)
T ss_pred             -CccCCceeeeecCCceeeecCchh
Confidence             011259999999999998887654

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.84  E-value=5.3e-20  Score=187.73  Aligned_cols=211  Identities=21%  Similarity=0.291  Sum_probs=168.7

Q ss_pred             ccCCCcEEEEEECCC-CCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECC
Q 004468           47 EGHQGCVNAISWNSK-GSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLS  125 (751)
Q Consensus        47 ~gH~~~V~~l~~s~d-g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~  125 (751)
                      .||++.|.+|+|+.. .+.|||||.|.+|++||+.++++..++ ..|.+.|.+++|+|.. ..+|++|+.|++|.+.|.+
T Consensus       240 ~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~-~~~~k~Vq~l~wh~~~-p~~LLsGs~D~~V~l~D~R  317 (463)
T KOG0270|consen  240 SGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSI-THHGKKVQTLEWHPYE-PSVLLSGSYDGTVALKDCR  317 (463)
T ss_pred             ccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceeh-hhcCCceeEEEecCCC-ceEEEeccccceEEeeecc
Confidence            489999999999985 459999999999999999999999998 7899999999999997 7999999999999999999


Q ss_pred             CCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCce
Q 004468          126 RFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAK  205 (751)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~  205 (751)
                      ....         .-..+ .-.+.|-.++|.|...+.|+++..||+|+-+|+|....+                      
T Consensus       318 ~~~~---------s~~~w-k~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~----------------------  365 (463)
T KOG0270|consen  318 DPSN---------SGKEW-KFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKP----------------------  365 (463)
T ss_pred             Cccc---------cCceE-EeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCc----------------------
Confidence            5321         11222 246778899999988899999999999999999987532                      


Q ss_pred             ecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEE
Q 004468          206 RSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHV  285 (751)
Q Consensus       206 ~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v  285 (751)
                        ++....|..+|.++++++..+.++++++.|+.|++|++....+.....               |.    -.-....|.
T Consensus       366 --vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~---------------~~----~~~~rl~c~  424 (463)
T KOG0270|consen  366 --VWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKE---------------HS----FKLGRLHCF  424 (463)
T ss_pred             --eeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCccccc---------------cc----ccccceeec
Confidence              233344788999999999889999999999999999997654322110               00    001125677


Q ss_pred             EEcCCCCE-EEEEeCCCcEEEEECCCCC
Q 004468          286 TFSPNGEE-VLLSYSGEHVYLMDVNHAG  312 (751)
Q Consensus       286 ~fspdg~~-Ll~~s~d~~I~lwdl~~~~  312 (751)
                      ++.|+-.+ |+.|+..+.++|||+.+..
T Consensus       425 ~~~~~~a~~la~GG~k~~~~vwd~~~~~  452 (463)
T KOG0270|consen  425 ALDPDVAFTLAFGGEKAVLRVWDIFTNS  452 (463)
T ss_pred             ccCCCcceEEEecCccceEEEeecccCh
Confidence            88887665 5566667789999998853

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.84  E-value=2.3e-19  Score=191.68  Aligned_cols=286  Identities=17%  Similarity=0.218  Sum_probs=203.3

Q ss_pred             ccccccccchhhhccccccEEeccCCCcEEEEEECCCCC---EEEEEeCCCcEEEEeCCCCe------------------
Q 004468           25 DVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGS---LLISGSDDTHINVWSYSSRK------------------   83 (751)
Q Consensus        25 ~~~~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~---~LaSgs~Dg~I~IWd~~~~~------------------   83 (751)
                      ..+..+.++.....+++.+.+|+||.+-|..|+|...+.   +|||+|.|..|+||.+.-+.                  
T Consensus       166 gs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~  245 (764)
T KOG1063|consen  166 GSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLP  245 (764)
T ss_pred             CcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCc
Confidence            345667777777889999999999999999999987554   89999999999999764211                  


Q ss_pred             ------EEE------EecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCC-------------------
Q 004468           84 ------LLH------SIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGL-------------------  132 (751)
Q Consensus        84 ------~~~------~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~-------------------  132 (751)
                            .+.      .+..||.+.|.++.|+|.  +..|+|++.|.++.+|.....+|.-.                   
T Consensus       246 ~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~--~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~l  323 (764)
T KOG1063|consen  246 VFMILEEIQYRISFEALLMGHEDWVYSVWWHPE--GLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGL  323 (764)
T ss_pred             eeeeeeeEEEEEehhhhhcCcccceEEEEEccc--hhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEE
Confidence                  111      223599999999999999  78899999999999998876533111                   


Q ss_pred             -----------------------CCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCC
Q 004468          133 -----------------------DDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSS  189 (751)
Q Consensus       133 -----------------------~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~  189 (751)
                                             +.....+.....+|.+.|++++|.| .+.+|+|.|.|.|-|+|---..+.       
T Consensus       324 w~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~p-sGeflLsvs~DQTTRlFa~wg~q~-------  395 (764)
T KOG1063|consen  324 WSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDP-SGEFLLSVSLDQTTRLFARWGRQQ-------  395 (764)
T ss_pred             EcCCCCEEEEecccCcEEEEeccCccceeeccccccccccceeeeecC-CCCEEEEeccccceeeeccccccc-------
Confidence                                   0111123345678999999999999 668999999999999986442110       


Q ss_pred             CCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCC-----C--------------
Q 004468          190 HQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP-----P--------------  250 (751)
Q Consensus       190 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~-----~--------------  250 (751)
                                    ....+..+..|...++|++|-+. ...+++|+.+..+|+|+....=     .              
T Consensus       396 --------------~wHEiaRPQiHGyDl~c~~~vn~-~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~  460 (764)
T KOG1063|consen  396 --------------EWHEIARPQIHGYDLTCLSFVNE-DLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPD  460 (764)
T ss_pred             --------------ceeeecccccccccceeeehccC-CceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhccc
Confidence                          02235666778899999999884 6789999999999999864310     0              


Q ss_pred             ---cc--------ccC--------------CCCCCCCccccccc------------cccccCCccccceEEEEEcCCCCE
Q 004468          251 ---LT--------SCQ--------------KRMSPPPCVNYFCP------------MHLSEHGRSSLHLTHVTFSPNGEE  293 (751)
Q Consensus       251 ---~~--------~~~--------------~~~~~~~~~~~~~~------------~~~~~~g~~~~~vt~v~fspdg~~  293 (751)
                         +.        .++              ......++.....|            -.-...||. +.|++++.+|+|+.
T Consensus       461 gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHG-yEv~~l~~s~~gnl  539 (764)
T KOG1063|consen  461 GANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHG-YEVYALAISPTGNL  539 (764)
T ss_pred             ccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCc-eeEEEEEecCCCCE
Confidence               00        000              00000000000001            001113553 47999999999999


Q ss_pred             EEEEeCC-----CcEEEEECCCCCcceeeeecCCCceeEEeCCCCCCc
Q 004468          294 VLLSYSG-----EHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGL  336 (751)
Q Consensus       294 Ll~~s~d-----~~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp~~~~~  336 (751)
                      +++++..     ..|+||+..+..+......|.-.+..++|+|+..-+
T Consensus       540 iASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~L  587 (764)
T KOG1063|consen  540 IASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYL  587 (764)
T ss_pred             EeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEE
Confidence            9998763     479999999987777677777788889999976543

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.83  E-value=6.9e-19  Score=172.69  Aligned_cols=205  Identities=19%  Similarity=0.263  Sum_probs=147.5

Q ss_pred             EEEECCCCCEEEEEeCCCcEEEEeCCCC------------eEEEEecccCCcceEEEEEe-------cCCCCcEEEEEEC
Q 004468           55 AISWNSKGSLLISGSDDTHINVWSYSSR------------KLLHSIETGHSANVFCTKFV-------PETSDELVVSGAG  115 (751)
Q Consensus        55 ~l~~s~dg~~LaSgs~Dg~I~IWd~~~~------------~~~~~l~~~h~~~V~~v~fs-------p~s~~~~l~sgs~  115 (751)
                      .+.|+|||..|++-+.|..+.+|++...            .....+.-.....|....|-       |+  -.++++.+.
T Consensus        54 gckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~--t~l~a~ssr  131 (406)
T KOG2919|consen   54 GCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPS--TNLFAVSSR  131 (406)
T ss_pred             cceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCc--cceeeeccc
Confidence            5789999999999999999999997421            01111212345668888876       45  478999999


Q ss_pred             CCcEEEEECCCCCCCCCCCCCCCCceeecccCCc---eeEEEEecCCCCEEEEEeCCCcEEEEec-CCCCCCCCCCCCCC
Q 004468          116 DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRR---VKKLAVEVGNPHVVWSASEDGTLRQHDF-RQGSSCPPAGSSHQ  191 (751)
Q Consensus       116 Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~---V~~l~~sp~~~~~l~s~s~Dg~I~iwDl-r~~~~~~~~~~~~~  191 (751)
                      |.-|++||.-++..++        ......|.+.   ..+++|+|+ +..| -++...+|++||+ |.+..+.....   
T Consensus       132 ~~PIh~wdaftG~lra--------Sy~~ydh~de~taAhsL~Fs~D-Geql-faGykrcirvFdt~RpGr~c~vy~t---  198 (406)
T KOG2919|consen  132 DQPIHLWDAFTGKLRA--------SYRAYDHQDEYTAAHSLQFSPD-GEQL-FAGYKRCIRVFDTSRPGRDCPVYTT---  198 (406)
T ss_pred             cCceeeeecccccccc--------chhhhhhHHhhhhheeEEecCC-CCeE-eecccceEEEeeccCCCCCCcchhh---
Confidence            9999999999764332        2222234433   357999995 4555 3677799999999 77765422111   


Q ss_pred             ccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccc
Q 004468          192 ECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMH  271 (751)
Q Consensus       192 ~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (751)
                           +          .....+...-+.+++|+|.+...+++|+....+-||.-....++..+                 
T Consensus       199 -----~----------~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~ll-----------------  246 (406)
T KOG2919|consen  199 -----V----------TKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLL-----------------  246 (406)
T ss_pred             -----h----------hcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeee-----------------
Confidence                 0          00112245678899999998889999999999999887666554332                 


Q ss_pred             cccCCccccceEEEEEcCCCCEEEEEeC-CCcEEEEECCC
Q 004468          272 LSEHGRSSLHLTHVTFSPNGEEVLLSYS-GEHVYLMDVNH  310 (751)
Q Consensus       272 ~~~~g~~~~~vt~v~fspdg~~Ll~~s~-d~~I~lwdl~~  310 (751)
                         .||.+ .||.+.|.++|+.|++|.. |..|..||++.
T Consensus       247 ---ggh~g-GvThL~~~edGn~lfsGaRk~dkIl~WDiR~  282 (406)
T KOG2919|consen  247 ---GGHGG-GVTHLQWCEDGNKLFSGARKDDKILCWDIRY  282 (406)
T ss_pred             ---cccCC-CeeeEEeccCcCeecccccCCCeEEEEeehh
Confidence               34555 5999999999999999987 88999999988

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.83  E-value=2e-18  Score=190.12  Aligned_cols=209  Identities=13%  Similarity=0.148  Sum_probs=163.6

Q ss_pred             ccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCC-eEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECC
Q 004468           47 EGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSR-KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLS  125 (751)
Q Consensus        47 ~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~-~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~  125 (751)
                      .+|++.-+.|+|.|+|+.|.+++.||.|++|+.... ....++ .-+...|.+++..    ..+|++|+.+++|.+|.+.
T Consensus        10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti-~~~g~~v~~ia~~----s~~f~~~s~~~tv~~y~fp   84 (933)
T KOG1274|consen   10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETI-DISGELVSSIACY----SNHFLTGSEQNTVLRYKFP   84 (933)
T ss_pred             hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchh-hccCceeEEEeec----ccceEEeeccceEEEeeCC
Confidence            368899999999999999999999999999997655 444444 2377778887754    3589999999999999998


Q ss_pred             CCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCce
Q 004468          126 RFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAK  205 (751)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~  205 (751)
                      .+..          -..+...+-++++++|+. ++.+++.||.|-.|++-++......                      
T Consensus        85 s~~~----------~~iL~Rftlp~r~~~v~g-~g~~iaagsdD~~vK~~~~~D~s~~----------------------  131 (933)
T KOG1274|consen   85 SGEE----------DTILARFTLPIRDLAVSG-SGKMIAAGSDDTAVKLLNLDDSSQE----------------------  131 (933)
T ss_pred             CCCc----------cceeeeeeccceEEEEec-CCcEEEeecCceeEEEEeccccchh----------------------
Confidence            7532          233445577899999998 7799999999999999998876522                      


Q ss_pred             ecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCcc-ccceEE
Q 004468          206 RSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRS-SLHLTH  284 (751)
Q Consensus       206 ~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~vt~  284 (751)
                         ....+|..+|.++.|+|. +++||+.+.||.|++||+..+.....+..-.+   +           .... ...++.
T Consensus       132 ---~~lrgh~apVl~l~~~p~-~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k---~-----------n~~~~s~i~~~  193 (933)
T KOG1274|consen  132 ---KVLRGHDAPVLQLSYDPK-GNFLAVSSCDGKVQIWDLQDGILSKTLTGVDK---D-----------NEFILSRICTR  193 (933)
T ss_pred             ---eeecccCCceeeeeEcCC-CCEEEEEecCceEEEEEcccchhhhhcccCCc---c-----------ccccccceeee
Confidence               223458899999999994 79999999999999999998765443321100   0           0000 224788


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEECCCC
Q 004468          285 VTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (751)
Q Consensus       285 v~fspdg~~Ll~~s~d~~I~lwdl~~~  311 (751)
                      ++|+|+|..|++-..|+.|++|+..+.
T Consensus       194 ~aW~Pk~g~la~~~~d~~Vkvy~r~~w  220 (933)
T KOG1274|consen  194 LAWHPKGGTLAVPPVDNTVKVYSRKGW  220 (933)
T ss_pred             eeecCCCCeEEeeccCCeEEEEccCCc
Confidence            999999999999999999999998773

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.83  E-value=7.6e-20  Score=182.76  Aligned_cols=231  Identities=18%  Similarity=0.267  Sum_probs=169.5

Q ss_pred             ccccccEEeccCCCcEEEEEECCCC-CEEEEEeCCCcEEEEeCCCCeEEE---EecccCCcceEEEEEecCCCCcEEEEE
Q 004468           38 RRLSQERELEGHQGCVNAISWNSKG-SLLISGSDDTHINVWSYSSRKLLH---SIETGHSANVFCTKFVPETSDELVVSG  113 (751)
Q Consensus        38 ~~~~~~~~L~gH~~~V~~l~~s~dg-~~LaSgs~Dg~I~IWd~~~~~~~~---~l~~~h~~~V~~v~fsp~s~~~~l~sg  113 (751)
                      ...+++.++.+|++.=.+|+|||-. -.|+||..-+.|++|.+.++.-..   .+ .+|+..|-.++|+|.. ...|+||
T Consensus       199 s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf-~gH~~SVEDLqWSptE-~~vfaSc  276 (440)
T KOG0302|consen  199 SEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPF-TGHTKSVEDLQWSPTE-DGVFASC  276 (440)
T ss_pred             cccCceEEecccCccceeeecccccccccccCccccceEeeeeccCceeecCccc-cccccchhhhccCCcc-CceEEee
Confidence            5567899999999999999999932 258899888999999998775432   24 6899999999999997 6899999


Q ss_pred             ECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCcc
Q 004468          114 AGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQEC  193 (751)
Q Consensus       114 s~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~  193 (751)
                      |.||+|+|||++.+..        ++....+.|..-|+.|.|+-..+ +|++|+.||+++|||+|.-+..          
T Consensus       277 S~DgsIrIWDiRs~~~--------~~~~~~kAh~sDVNVISWnr~~~-lLasG~DdGt~~iwDLR~~~~~----------  337 (440)
T KOG0302|consen  277 SCDGSIRIWDIRSGPK--------KAAVSTKAHNSDVNVISWNRREP-LLASGGDDGTLSIWDLRQFKSG----------  337 (440)
T ss_pred             ecCceEEEEEecCCCc--------cceeEeeccCCceeeEEccCCcc-eeeecCCCceEEEEEhhhccCC----------
Confidence            9999999999997533        22334488999999999998554 9999999999999999986532          


Q ss_pred             ceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccc
Q 004468          194 RNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLS  273 (751)
Q Consensus       194 ~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (751)
                                  ..+..+..|..+|+++.|+|.+...|++++.|..|.|||+..-.-......  .....++...|.-+.
T Consensus       338 ------------~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~--~a~~~L~dlPpQLLF  403 (440)
T KOG0302|consen  338 ------------QPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQ--EAAEGLQDLPPQLLF  403 (440)
T ss_pred             ------------CcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhcc--ccccchhcCCceeEE
Confidence                        123344458899999999999889999999999999999975432110000  000112222222222


Q ss_pred             cC-CccccceEEEEEcCCCC-EEEEEeCCCcEEEE
Q 004468          274 EH-GRSSLHLTHVTFSPNGE-EVLLSYSGEHVYLM  306 (751)
Q Consensus       274 ~~-g~~~~~vt~v~fspdg~-~Ll~~s~d~~I~lw  306 (751)
                      -+ |..  .+..+.|++.-. +|++.+.|| +.||
T Consensus       404 VHqGQk--e~KevhWH~QiPG~lvsTa~dG-fnVf  435 (440)
T KOG0302|consen  404 VHQGQK--EVKEVHWHRQIPGLLVSTAIDG-FNVF  435 (440)
T ss_pred             Eecchh--HhhhheeccCCCCeEEEecccc-eeEE
Confidence            22 222  378899999765 444444554 4444

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.83  E-value=8.5e-20  Score=177.81  Aligned_cols=234  Identities=16%  Similarity=0.247  Sum_probs=175.4

Q ss_pred             ccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEec-ccCCcceEEEEEecCCCCcEEEEEECCCc
Q 004468           40 LSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIE-TGHSANVFCTKFVPETSDELVVSGAGDAE  118 (751)
Q Consensus        40 ~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~-~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~  118 (751)
                      .-++++|-.|.++|++|.|+|...+|+||+.|++|+++|+........++ .....+|.++.|+|.  |.+|+.|..-.+
T Consensus       162 hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPs--GefllvgTdHp~  239 (430)
T KOG0640|consen  162 HPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPS--GEFLLVGTDHPT  239 (430)
T ss_pred             CceEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCC--CceEEEecCCCc
Confidence            45788999999999999999999999999999999999987543322221 134578999999999  899999999999


Q ss_pred             EEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEE
Q 004468          119 VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILL  198 (751)
Q Consensus       119 V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~  198 (751)
                      +++||+.+.+.  +     .....-..|++.|+++.+++ .+.+.++++.||.|++||--.++++.           .+-
T Consensus       240 ~rlYdv~T~Qc--f-----vsanPd~qht~ai~~V~Ys~-t~~lYvTaSkDG~IklwDGVS~rCv~-----------t~~  300 (430)
T KOG0640|consen  240 LRLYDVNTYQC--F-----VSANPDDQHTGAITQVRYSS-TGSLYVTASKDGAIKLWDGVSNRCVR-----------TIG  300 (430)
T ss_pred             eeEEeccceeE--e-----eecCcccccccceeEEEecC-CccEEEEeccCCcEEeeccccHHHHH-----------HHH
Confidence            99999997432  1     11223457999999999999 67899999999999999976665331           111


Q ss_pred             ecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCcc--------------
Q 004468          199 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCV--------------  264 (751)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~--------------  264 (751)
                      ...            ....|.+..|.. +++++++.+.|..|++|.+.++..+..+.+........              
T Consensus       301 ~AH------------~gsevcSa~Ftk-n~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyV  367 (430)
T KOG0640|consen  301 NAH------------GGSEVCSAVFTK-NGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYV  367 (430)
T ss_pred             hhc------------CCceeeeEEEcc-CCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceE
Confidence            111            235788889998 58999999999999999999988765543321111000              


Q ss_pred             -------cccc--------ccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004468          265 -------NYFC--------PMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDV  308 (751)
Q Consensus       265 -------~~~~--------~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl  308 (751)
                             ..++        ...+...||.+ .+..+.-||.+.-+++++.|-.+++|--
T Consensus       368 l~pDEas~slcsWdaRtadr~~l~slgHn~-a~R~i~HSP~~p~FmTcsdD~raRFWyr  425 (430)
T KOG0640|consen  368 LFPDEASNSLCSWDARTADRVALLSLGHNG-AVRWIVHSPVEPAFMTCSDDFRARFWYR  425 (430)
T ss_pred             EccccccCceeeccccchhhhhhcccCCCC-CceEEEeCCCCCceeeecccceeeeeee
Confidence                   0000        11122235655 6899999999999999999999999953

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.82  E-value=9.4e-19  Score=171.29  Aligned_cols=250  Identities=13%  Similarity=0.193  Sum_probs=173.3

Q ss_pred             cEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCe-----EEE-Eecc--------------------------
Q 004468           43 ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK-----LLH-SIET--------------------------   90 (751)
Q Consensus        43 ~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~-----~~~-~l~~--------------------------   90 (751)
                      ..+|+||.+.|++|+|+.||++|||++.|++|+||++.+..     ++. .+..                          
T Consensus        79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~  158 (420)
T KOG2096|consen   79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLC  158 (420)
T ss_pred             hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEE
Confidence            45789999999999999999999999999999999986421     110 0000                          


Q ss_pred             --------------------------cCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeec
Q 004468           91 --------------------------GHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQ  144 (751)
Q Consensus        91 --------------------------~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~  144 (751)
                                                .|.-.|..+-...+  +.+|+|++.|..|.||++..           +.+..+.
T Consensus       159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~--~k~imsas~dt~i~lw~lkG-----------q~L~~id  225 (420)
T KOG2096|consen  159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGN--AKYIMSASLDTKICLWDLKG-----------QLLQSID  225 (420)
T ss_pred             EEEeeecccCCCCcccccccccccchhcccceEEEeecCC--ceEEEEecCCCcEEEEecCC-----------ceeeeec
Confidence                                      12222222222222  57899999999999999982           4466666


Q ss_pred             ccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEe
Q 004468          145 CHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDIS  224 (751)
Q Consensus       145 ~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~s  224 (751)
                      .....-+..+.+| +++++++++.---|++|.+--.+.-                 .......+....+|...|..++|+
T Consensus       226 tnq~~n~~aavSP-~GRFia~~gFTpDVkVwE~~f~kdG-----------------~fqev~rvf~LkGH~saV~~~aFs  287 (420)
T KOG2096|consen  226 TNQSSNYDAAVSP-DGRFIAVSGFTPDVKVWEPIFTKDG-----------------TFQEVKRVFSLKGHQSAVLAAAFS  287 (420)
T ss_pred             cccccccceeeCC-CCcEEEEecCCCCceEEEEEeccCc-----------------chhhhhhhheeccchhheeeeeeC
Confidence            5566667789999 7899999999999999986433210                 001122345566799999999999


Q ss_pred             CCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccc-cccccccCCccccceEEEEEcCCCCEEEEEeCCCcE
Q 004468          225 STRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYF-CPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHV  303 (751)
Q Consensus       225 p~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I  303 (751)
                      + +...+++.+.||.+||||+.-.....      ..|..++.+ .|.+-..    . ....++.+|+|+.|+++. ...+
T Consensus       288 n-~S~r~vtvSkDG~wriwdtdVrY~~~------qDpk~Lk~g~~pl~aag----~-~p~RL~lsP~g~~lA~s~-gs~l  354 (420)
T KOG2096|consen  288 N-SSTRAVTVSKDGKWRIWDTDVRYEAG------QDPKILKEGSAPLHAAG----S-EPVRLELSPSGDSLAVSF-GSDL  354 (420)
T ss_pred             C-CcceeEEEecCCcEEEeeccceEecC------CCchHhhcCCcchhhcC----C-CceEEEeCCCCcEEEeec-CCce
Confidence            9 48999999999999999986432111      112222322 2232222    1 234899999999777665 4589


Q ss_pred             EEEECCCCCcc-eeeeecCCCceeEEeCCCCCCc
Q 004468          304 YLMDVNHAGGR-AMRYTVGDASKIMSFTPTLNGL  336 (751)
Q Consensus       304 ~lwdl~~~~~~-~~~~~~~~~~~~~~~sp~~~~~  336 (751)
                      ++|..++++.. .....++..+..++|+|+..-+
T Consensus       355 ~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~  388 (420)
T KOG2096|consen  355 KVFASEDGKDYPELEDIHSTTISSISYSSDGKYI  388 (420)
T ss_pred             EEEEcccCccchhHHHhhcCceeeEEecCCCcEE
Confidence            99999887633 3344567788889999987654

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.82  E-value=1.1e-18  Score=179.21  Aligned_cols=196  Identities=15%  Similarity=0.141  Sum_probs=152.7

Q ss_pred             CEEEEEe-CCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCce
Q 004468           63 SLLISGS-DDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSA  141 (751)
Q Consensus        63 ~~LaSgs-~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~  141 (751)
                      .+++++. .-..|.+|.+......... .--.+.|.+++-+|.  |.+|+.|...+.+++|.+.++          ..+.
T Consensus        51 ~yllsaq~~rp~l~vw~i~k~~~~~q~-~v~Pg~v~al~s~n~--G~~l~ag~i~g~lYlWelssG----------~LL~  117 (476)
T KOG0646|consen   51 EYLLSAQLKRPLLHVWEILKKDQVVQY-IVLPGPVHALASSNL--GYFLLAGTISGNLYLWELSSG----------ILLN  117 (476)
T ss_pred             hheeeecccCccccccccCchhhhhhh-cccccceeeeecCCC--ceEEEeecccCcEEEEEeccc----------cHHH
Confidence            4666665 3446889998755444322 345788999999999  889988889999999999976          6688


Q ss_pred             eecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEE
Q 004468          142 LYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSC  221 (751)
Q Consensus       142 ~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i  221 (751)
                      .+.+|-..|+++.|+- ++.+|+|||.||.|.+|++-.--.                .........+..+..|..+|+++
T Consensus       118 v~~aHYQ~ITcL~fs~-dgs~iiTgskDg~V~vW~l~~lv~----------------a~~~~~~~p~~~f~~HtlsITDl  180 (476)
T KOG0646|consen  118 VLSAHYQSITCLKFSD-DGSHIITGSKDGAVLVWLLTDLVS----------------ADNDHSVKPLHIFSDHTLSITDL  180 (476)
T ss_pred             HHHhhccceeEEEEeC-CCcEEEecCCCccEEEEEEEeecc----------------cccCCCccceeeeccCcceeEEE
Confidence            8999999999999998 678899999999999998754211                01111223344556688999999


Q ss_pred             EEeCCC-CcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCC
Q 004468          222 DISSTR-PHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG  300 (751)
Q Consensus       222 ~~sp~~-~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d  300 (751)
                      .+.+.+ ..++++++.|.++|+||+.++..+.++.                      ....+++++.+|-++.+++|+.+
T Consensus       181 ~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~----------------------fp~si~av~lDpae~~~yiGt~~  238 (476)
T KOG0646|consen  181 QIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT----------------------FPSSIKAVALDPAERVVYIGTEE  238 (476)
T ss_pred             EecCCCccceEEEecCCceEEEEEeccceeeEEEe----------------------cCCcceeEEEcccccEEEecCCc
Confidence            988732 3589999999999999999887554321                      11258999999999999999999


Q ss_pred             CcEEEEECCC
Q 004468          301 EHVYLMDVNH  310 (751)
Q Consensus       301 ~~I~lwdl~~  310 (751)
                      |.|.+.++.+
T Consensus       239 G~I~~~~~~~  248 (476)
T KOG0646|consen  239 GKIFQNLLFK  248 (476)
T ss_pred             ceEEeeehhc
Confidence            9999999877

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.82  E-value=2.7e-18  Score=183.24  Aligned_cols=234  Identities=15%  Similarity=0.241  Sum_probs=174.8

Q ss_pred             ccccccchh-hhccccccEEeccCCCcEEEEEECCC-----------CCEEEEEeCCCcEEEEeCCCCe---EEE-Eec-
Q 004468           27 NHSLQMHSS-LVRRLSQERELEGHQGCVNAISWNSK-----------GSLLISGSDDTHINVWSYSSRK---LLH-SIE-   89 (751)
Q Consensus        27 ~~~l~~~~~-~i~~~~~~~~L~gH~~~V~~l~~s~d-----------g~~LaSgs~Dg~I~IWd~~~~~---~~~-~l~-   89 (751)
                      ++.|.+|+- .+.+....+.+-.|..|||.+.--|-           ...++|||.|++|++||+..+.   ..+ .+. 
T Consensus       345 dhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils  424 (1080)
T KOG1408|consen  345 DHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILS  424 (1080)
T ss_pred             CceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccch
Confidence            678888875 67777777888889999999987661           2358999999999999987521   100 000 


Q ss_pred             -------------------------------ccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCC
Q 004468           90 -------------------------------TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAIT  138 (751)
Q Consensus        90 -------------------------------~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~  138 (751)
                                                     -+....|.+++.+|+  +++|++|..-|+++||++...          +
T Consensus       425 ~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~--gqhLAsGDr~GnlrVy~Lq~l----------~  492 (1080)
T KOG1408|consen  425 ANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPD--GQHLASGDRGGNLRVYDLQEL----------E  492 (1080)
T ss_pred             hhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCC--cceecccCccCceEEEEehhh----------h
Confidence                                           123457899999999  899999999999999999864          4


Q ss_pred             CceeecccCCceeEEEEecC--CCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCcc
Q 004468          139 PSALYQCHTRRVKKLAVEVG--NPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTL  216 (751)
Q Consensus       139 ~~~~~~~h~~~V~~l~~sp~--~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  216 (751)
                      ....+..|...|.|+.|+..  ..++|++++.|..|.+||+...-.+                        +....+|..
T Consensus       493 ~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l------------------------~qtld~HSs  548 (1080)
T KOG1408|consen  493 YTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDL------------------------VQTLDGHSS  548 (1080)
T ss_pred             hhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccch------------------------hhhhccccc
Confidence            56778899999999999842  2368999999999999998765422                        334455888


Q ss_pred             ceEEEEEeCCCC-cEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEE
Q 004468          217 SLKSCDISSTRP-HLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVL  295 (751)
Q Consensus       217 ~v~~i~~sp~~~-~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll  295 (751)
                      .|+++.|...+. ..+++++.|..|.+--.++...             ...| +.+....++.  .++.++..|..++++
T Consensus       549 sITsvKFa~~gln~~MiscGADksimFr~~qk~~~-------------g~~f-~r~t~t~~kt--TlYDm~Vdp~~k~v~  612 (1080)
T KOG1408|consen  549 SITSVKFACNGLNRKMISCGADKSIMFRVNQKASS-------------GRLF-PRHTQTLSKT--TLYDMAVDPTSKLVV  612 (1080)
T ss_pred             ceeEEEEeecCCceEEEeccCchhhheehhccccC-------------ceec-cccccccccc--eEEEeeeCCCcceEE
Confidence            999999987543 5788999998775432222110             1111 1122222333  489999999999999


Q ss_pred             EEeCCCcEEEEECCCCC
Q 004468          296 LSYSGEHVYLMDVNHAG  312 (751)
Q Consensus       296 ~~s~d~~I~lwdl~~~~  312 (751)
                      +++.|..|+|||+.+++
T Consensus       613 t~cQDrnirif~i~sgK  629 (1080)
T KOG1408|consen  613 TVCQDRNIRIFDIESGK  629 (1080)
T ss_pred             EEecccceEEEeccccc
Confidence            99999999999999964

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.81  E-value=8.5e-18  Score=177.37  Aligned_cols=186  Identities=11%  Similarity=0.163  Sum_probs=131.8

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEE-EEEECCCcEEEEECCCCCCCCCCCCCCCCc
Q 004468           62 GSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELV-VSGAGDAEVRLFNLSRFSGRGLDDNAITPS  140 (751)
Q Consensus        62 g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l-~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~  140 (751)
                      +.+++|++.|+.|++||+.+++.+..+ ..| ..+.+++|+|+  +..+ ++++.++.|++||+..+          +.+
T Consensus         1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~-~~~-~~~~~l~~~~d--g~~l~~~~~~~~~v~~~d~~~~----------~~~   66 (300)
T TIGR03866         1 EKAYVSNEKDNTISVIDTATLEVTRTF-PVG-QRPRGITLSKD--GKLLYVCASDSDTIQVIDLATG----------EVI   66 (300)
T ss_pred             CcEEEEecCCCEEEEEECCCCceEEEE-ECC-CCCCceEECCC--CCEEEEEECCCCeEEEEECCCC----------cEE
Confidence            457899999999999999999888887 444 34778999999  6655 67788999999999864          224


Q ss_pred             eeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEE
Q 004468          141 ALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKS  220 (751)
Q Consensus       141 ~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~  220 (751)
                      ..+..+.. +..++|+|++..++++++.|+.|++||+++.+..              ....            ....+.+
T Consensus        67 ~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~--------------~~~~------------~~~~~~~  119 (300)
T TIGR03866        67 GTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIETRKVL--------------AEIP------------VGVEPEG  119 (300)
T ss_pred             EeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEE--------------eEee------------CCCCcce
Confidence            44444433 5678999955445566677999999999875421              0000            1123567


Q ss_pred             EEEeCCCCcEEEEEeCCC-eEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEe-
Q 004468          221 CDISSTRPHLLLVGGSDA-FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSY-  298 (751)
Q Consensus       221 i~~sp~~~~~l~sgs~D~-~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s-  298 (751)
                      ++|+|+ +.++++++.++ .+.+||.++.+.....              +     .+   ..+.+++|+|+|++|++++ 
T Consensus       120 ~~~~~d-g~~l~~~~~~~~~~~~~d~~~~~~~~~~--------------~-----~~---~~~~~~~~s~dg~~l~~~~~  176 (300)
T TIGR03866       120 MAVSPD-GKIVVNTSETTNMAHFIDTKTYEIVDNV--------------L-----VD---QRPRFAEFTADGKELWVSSE  176 (300)
T ss_pred             EEECCC-CCEEEEEecCCCeEEEEeCCCCeEEEEE--------------E-----cC---CCccEEEECCCCCEEEEEcC
Confidence            999994 78888887764 5778898765422110              0     00   1256789999999987665 


Q ss_pred             CCCcEEEEECCCC
Q 004468          299 SGEHVYLMDVNHA  311 (751)
Q Consensus       299 ~d~~I~lwdl~~~  311 (751)
                      .++.|++||+.++
T Consensus       177 ~~~~v~i~d~~~~  189 (300)
T TIGR03866       177 IGGTVSVIDVATR  189 (300)
T ss_pred             CCCEEEEEEcCcc
Confidence            5899999999874

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.81  E-value=3.8e-20  Score=198.38  Aligned_cols=235  Identities=16%  Similarity=0.252  Sum_probs=189.4

Q ss_pred             EEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEE
Q 004468           44 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFN  123 (751)
Q Consensus        44 ~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd  123 (751)
                      +++..|...|.|+..-..++.+++|+.|..+-+|.+.....+..+ .+|..+|-||.|.+.  ..+|++|+.+|+|++||
T Consensus        22 ~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~-~~hespIeSl~f~~~--E~LlaagsasgtiK~wD   98 (825)
T KOG0267|consen   22 REFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSL-TGHESPIESLTFDTS--ERLLAAGSASGTIKVWD   98 (825)
T ss_pred             hhhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhhee-eccCCcceeeecCcc--hhhhcccccCCceeeee
Confidence            456679999999999778999999999999999998877777777 899999999999999  78999999999999999


Q ss_pred             CCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccC
Q 004468          124 LSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCG  203 (751)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~  203 (751)
                      +...          +.++++.||...+.++.|+| -+.++++|+.|+-+++||+|...+.                    
T Consensus        99 leeA----------k~vrtLtgh~~~~~sv~f~P-~~~~~a~gStdtd~~iwD~Rk~Gc~--------------------  147 (825)
T KOG0267|consen   99 LEEA----------KIVRTLTGHLLNITSVDFHP-YGEFFASGSTDTDLKIWDIRKKGCS--------------------  147 (825)
T ss_pred             hhhh----------hhhhhhhccccCcceeeecc-ceEEeccccccccceehhhhccCce--------------------
Confidence            9964          55789999999999999999 5678899999999999999964321                    


Q ss_pred             ceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceE
Q 004468          204 AKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLT  283 (751)
Q Consensus       204 ~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt  283 (751)
                           ....+|...|.++.|+| +++++++|+.|..++|||...++....+                    .+|.. .+.
T Consensus       148 -----~~~~s~~~vv~~l~lsP-~Gr~v~~g~ed~tvki~d~~agk~~~ef--------------------~~~e~-~v~  200 (825)
T KOG0267|consen  148 -----HTYKSHTRVVDVLRLSP-DGRWVASGGEDNTVKIWDLTAGKLSKEF--------------------KSHEG-KVQ  200 (825)
T ss_pred             -----eeecCCcceeEEEeecC-CCceeeccCCcceeeeeccccccccccc--------------------ccccc-ccc
Confidence                 12233667789999999 5899999999999999999877654433                    22333 588


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECCCCCcceeeeecCCCceeEEeCCCCCCcccC
Q 004468          284 HVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQ  339 (751)
Q Consensus       284 ~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~  339 (751)
                      ++.|+|..-.+..|+.|++|++||+++-......-.....+....|+|+.......
T Consensus       201 sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G  256 (825)
T KOG0267|consen  201 SLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSG  256 (825)
T ss_pred             ccccCchhhhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCceeeecC
Confidence            89999999999999999999999999622111111123456667788876554433

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.81  E-value=3.7e-18  Score=167.32  Aligned_cols=158  Identities=16%  Similarity=0.226  Sum_probs=124.9

Q ss_pred             ccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCC-CEEEEEeC
Q 004468           90 TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNP-HVVWSASE  168 (751)
Q Consensus        90 ~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~-~~l~s~s~  168 (751)
                      ..|.+.|++|+.+    +.++||||.|-+|+|||+...          ..+..+..|.+.|+++.|.+.-. ..|++|++
T Consensus        40 ~aH~~sitavAVs----~~~~aSGssDetI~IYDm~k~----------~qlg~ll~HagsitaL~F~~~~S~shLlS~sd  105 (362)
T KOG0294|consen   40 SAHAGSITALAVS----GPYVASGSSDETIHIYDMRKR----------KQLGILLSHAGSITALKFYPPLSKSHLLSGSD  105 (362)
T ss_pred             cccccceeEEEec----ceeEeccCCCCcEEEEeccch----------hhhcceeccccceEEEEecCCcchhheeeecC
Confidence            6899999999987    689999999999999999975          34667788999999999987322 26779999


Q ss_pred             CCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCC
Q 004468          169 DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRML  248 (751)
Q Consensus       169 Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~  248 (751)
                      ||.|.+|+...-..                         +.....|...|+.++++|. +++.++.+.|+.+|+|++-.+
T Consensus       106 DG~i~iw~~~~W~~-------------------------~~slK~H~~~Vt~lsiHPS-~KLALsVg~D~~lr~WNLV~G  159 (362)
T KOG0294|consen  106 DGHIIIWRVGSWEL-------------------------LKSLKAHKGQVTDLSIHPS-GKLALSVGGDQVLRTWNLVRG  159 (362)
T ss_pred             CCcEEEEEcCCeEE-------------------------eeeecccccccceeEecCC-CceEEEEcCCceeeeehhhcC
Confidence            99999999876532                         2233447778999999995 789999999999999999776


Q ss_pred             CCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004468          249 PPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (751)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~  310 (751)
                      +.-..+.                +   ++   ..+.|.|+|.|.++++++.+ .|-+|.+.+
T Consensus       160 r~a~v~~----------------L---~~---~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~  198 (362)
T KOG0294|consen  160 RVAFVLN----------------L---KN---KATLVSWSPQGDHFVVSGRN-KIDIYQLDN  198 (362)
T ss_pred             ccceeec----------------c---CC---cceeeEEcCCCCEEEEEecc-EEEEEeccc
Confidence            5321110                0   11   24569999999998888765 788888777

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.81  E-value=1.1e-17  Score=172.96  Aligned_cols=233  Identities=17%  Similarity=0.261  Sum_probs=172.0

Q ss_pred             EEeccCC-CcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEE
Q 004468           44 RELEGHQ-GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLF  122 (751)
Q Consensus        44 ~~L~gH~-~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vw  122 (751)
                      ..++++. .-|.|++|.++|. ++||..+|+|.||+..+.+..++.. .|.+.|+++....+  | .|+||+.|+.|..|
T Consensus       239 ~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~-aH~ggv~~L~~lr~--G-tllSGgKDRki~~W  313 (626)
T KOG2106|consen  239 GIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVH-AHDGGVFSLCMLRD--G-TLLSGGKDRKIILW  313 (626)
T ss_pred             eccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEee-ecCCceEEEEEecC--c-cEeecCccceEEec
Confidence            3445543 5799999999998 7799999999999998888888874 99999999999988  4 56679999999999


Q ss_pred             ECCCCCCCCCC------------------------------CCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcE
Q 004468          123 NLSRFSGRGLD------------------------------DNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTL  172 (751)
Q Consensus       123 d~~~~~~~~~~------------------------------~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I  172 (751)
                      |-.....+...                              ..+.....+..+|.+....++.+| ...+|++++.|+.+
T Consensus       314 d~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hp-s~~q~~T~gqdk~v  392 (626)
T KOG2106|consen  314 DDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHP-SKNQLLTCGQDKHV  392 (626)
T ss_pred             cccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCC-ChhheeeccCcceE
Confidence            94432211110                              000111234467899999999999 56788899999999


Q ss_pred             EEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCcc
Q 004468          173 RQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLT  252 (751)
Q Consensus       173 ~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~  252 (751)
                      ++|+  ..+              ..|.-.            -..++.|++|+|. + .+++|...|...+.|..+...+.
T Consensus       393 ~lW~--~~k--------------~~wt~~------------~~d~~~~~~fhps-g-~va~Gt~~G~w~V~d~e~~~lv~  442 (626)
T KOG2106|consen  393 RLWN--DHK--------------LEWTKI------------IEDPAECADFHPS-G-VVAVGTATGRWFVLDTETQDLVT  442 (626)
T ss_pred             EEcc--CCc--------------eeEEEE------------ecCceeEeeccCc-c-eEEEeeccceEEEEecccceeEE
Confidence            9999  222              122211            2457889999996 4 99999999999999998744322


Q ss_pred             ccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcceeee--ecCCCceeEEeC
Q 004468          253 SCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRY--TVGDASKIMSFT  330 (751)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~~~--~~~~~~~~~~~s  330 (751)
                      .                 |.    . +.+++.++|+|+|.+|++|+.|+.||||-+...+......  .++.++..+.|+
T Consensus       443 ~-----------------~~----d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS  500 (626)
T KOG2106|consen  443 I-----------------HT----D-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWS  500 (626)
T ss_pred             E-----------------Ee----c-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeec
Confidence            1                 11    1 2369999999999999999999999999998865443333  234556666677


Q ss_pred             CCCC
Q 004468          331 PTLN  334 (751)
Q Consensus       331 p~~~  334 (751)
                      ++.+
T Consensus       501 ~Ds~  504 (626)
T KOG2106|consen  501 SDSQ  504 (626)
T ss_pred             CCCc
Confidence            6654

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.81  E-value=5.2e-19  Score=188.66  Aligned_cols=257  Identities=14%  Similarity=0.188  Sum_probs=205.6

Q ss_pred             cCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecC-CCCcEEEEEECCCcEEEEECCC
Q 004468           48 GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPE-TSDELVVSGAGDAEVRLFNLSR  126 (751)
Q Consensus        48 gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~-s~~~~l~sgs~Dg~V~vwd~~~  126 (751)
                      +-.-.|.+|+.+|+|++||+|..-|+|+||++..-.....+ ..|...|.|+.|+.. ...++|++++.|..|.|+|+..
T Consensus       457 d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~-eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~r  535 (1080)
T KOG1408|consen  457 DSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFM-EAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKR  535 (1080)
T ss_pred             CcccceEEEEECCCcceecccCccCceEEEEehhhhhhhhe-ecccceeEEEeecCchhhhHhhhhccCCceEEEEeccc
Confidence            44567999999999999999999999999999988877777 799999999999843 3347899999999999999985


Q ss_pred             CCCCCCCCCCCCCceeecccCCceeEEEEecCCC-CEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCce
Q 004468          127 FSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNP-HVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAK  205 (751)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~-~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~  205 (751)
                      .         +.+++++.+|...|+++.|...+. ..++++|.|+.|. |+.......           ..++. +    
T Consensus       536 n---------y~l~qtld~HSssITsvKFa~~gln~~MiscGADksim-Fr~~qk~~~-----------g~~f~-r----  589 (1080)
T KOG1408|consen  536 N---------YDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIM-FRVNQKASS-----------GRLFP-R----  589 (1080)
T ss_pred             c---------cchhhhhcccccceeEEEEeecCCceEEEeccCchhhh-eehhccccC-----------ceecc-c----
Confidence            3         467899999999999999987443 4688999999885 443321100           00000 0    


Q ss_pred             ecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEE
Q 004468          206 RSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHV  285 (751)
Q Consensus       206 ~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v  285 (751)
                         .........++.+++.|. ..++++++.|..|||||+.+++....+.+.                 ++|.+ ..-.+
T Consensus       590 ---~t~t~~ktTlYDm~Vdp~-~k~v~t~cQDrnirif~i~sgKq~k~FKgs-----------------~~~eG-~lIKv  647 (1080)
T KOG1408|consen  590 ---HTQTLSKTTLYDMAVDPT-SKLVVTVCQDRNIRIFDIESGKQVKSFKGS-----------------RDHEG-DLIKV  647 (1080)
T ss_pred             ---cccccccceEEEeeeCCC-cceEEEEecccceEEEeccccceeeeeccc-----------------ccCCC-ceEEE
Confidence               000113456889999995 789999999999999999998765554321                 33433 46778


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEECCCCCcceeeeecCCCceeEEeCCCCCCcccCCCcccccccccccc
Q 004468          286 TFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFLQTNIRVR  353 (751)
Q Consensus       286 ~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~  353 (751)
                      ...|.|.||++++.|.++.+||+.++......++|.+.+..+.|.++-+.+-....++..+....+..
T Consensus       648 ~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~~  715 (1080)
T KOG1408|consen  648 ILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPLT  715 (1080)
T ss_pred             EECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEEECchh
Confidence            99999999999999999999999999999999999999999999999999888888888887655543

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.80  E-value=9.2e-18  Score=164.42  Aligned_cols=155  Identities=15%  Similarity=0.234  Sum_probs=119.8

Q ss_pred             ccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCC
Q 004468           90 TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED  169 (751)
Q Consensus        90 ~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~D  169 (751)
                      ..-...|.+|+|+|.  .+.|+.++.||++++||+...+           +...-.|..++.+++|.+  ...+++|+.|
T Consensus        10 npP~d~IS~v~f~~~--~~~LLvssWDgslrlYdv~~~~-----------l~~~~~~~~plL~c~F~d--~~~~~~G~~d   74 (323)
T KOG1036|consen   10 NPPEDGISSVKFSPS--SSDLLVSSWDGSLRLYDVPANS-----------LKLKFKHGAPLLDCAFAD--ESTIVTGGLD   74 (323)
T ss_pred             CCChhceeeEEEcCc--CCcEEEEeccCcEEEEeccchh-----------hhhheecCCceeeeeccC--CceEEEeccC
Confidence            445688999999987  4667777799999999998642           333345999999999986  3577899999


Q ss_pred             CcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCC
Q 004468          170 GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP  249 (751)
Q Consensus       170 g~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~  249 (751)
                      |.|+.+|+.++...                          ....|...+.||..++. ...+++|+.|++|++||.|...
T Consensus        75 g~vr~~Dln~~~~~--------------------------~igth~~~i~ci~~~~~-~~~vIsgsWD~~ik~wD~R~~~  127 (323)
T KOG1036|consen   75 GQVRRYDLNTGNED--------------------------QIGTHDEGIRCIEYSYE-VGCVISGSWDKTIKFWDPRNKV  127 (323)
T ss_pred             ceEEEEEecCCcce--------------------------eeccCCCceEEEEeecc-CCeEEEcccCccEEEEeccccc
Confidence            99999999987632                          11237788999999984 6799999999999999999633


Q ss_pred             CccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004468          250 PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (751)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~  310 (751)
                      ....+.                   .   ...|.++..  .|+.|++|+.+..|.+||+.+
T Consensus       128 ~~~~~d-------------------~---~kkVy~~~v--~g~~LvVg~~~r~v~iyDLRn  164 (323)
T KOG1036|consen  128 VVGTFD-------------------Q---GKKVYCMDV--SGNRLVVGTSDRKVLIYDLRN  164 (323)
T ss_pred             cccccc-------------------c---CceEEEEec--cCCEEEEeecCceEEEEEccc
Confidence            222111                   0   113655544  577899999999999999998

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.80  E-value=2e-18  Score=177.82  Aligned_cols=212  Identities=18%  Similarity=0.288  Sum_probs=167.4

Q ss_pred             cccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCC---eEEEEec-ccCCcceEEEEEecCCCCcEEEEEE
Q 004468           39 RLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSR---KLLHSIE-TGHSANVFCTKFVPETSDELVVSGA  114 (751)
Q Consensus        39 ~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~---~~~~~l~-~~h~~~V~~v~fsp~s~~~~l~sgs  114 (751)
                      .++.+++|. |..-|.++..|...+++.||+. |.|+|||+...   ..+..+. ..-...|.+++.+|+  |+.|++|+
T Consensus       409 harq~~tL~-HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pd--grtLivGG  484 (705)
T KOG0639|consen  409 HARQINTLA-HGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPD--GRTLIVGG  484 (705)
T ss_pred             hHHhhhhhc-cCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCC--CceEEecc
Confidence            345566664 8899999999999999999976 78999998632   2333331 124577999999999  89999999


Q ss_pred             CCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccc
Q 004468          115 GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECR  194 (751)
Q Consensus       115 ~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~  194 (751)
                      .-.++.|||+...+.+.        ...+.+-.-..+.++.+| +.++..+|..||.|+|||++....            
T Consensus       485 eastlsiWDLAapTpri--------kaeltssapaCyALa~sp-DakvcFsccsdGnI~vwDLhnq~~------------  543 (705)
T KOG0639|consen  485 EASTLSIWDLAAPTPRI--------KAELTSSAPACYALAISP-DAKVCFSCCSDGNIAVWDLHNQTL------------  543 (705)
T ss_pred             ccceeeeeeccCCCcch--------hhhcCCcchhhhhhhcCC-ccceeeeeccCCcEEEEEccccee------------
Confidence            99999999999754321        334444455678899999 668888999999999999998652            


Q ss_pred             eEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCcccccccccccc
Q 004468          195 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSE  274 (751)
Q Consensus       195 ~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (751)
                                   +..+++|...+.||.+++ ++..|-+|+-|++||.||+|.+..+...                    
T Consensus       544 -------------VrqfqGhtDGascIdis~-dGtklWTGGlDntvRcWDlregrqlqqh--------------------  589 (705)
T KOG0639|consen  544 -------------VRQFQGHTDGASCIDISK-DGTKLWTGGLDNTVRCWDLREGRQLQQH--------------------  589 (705)
T ss_pred             -------------eecccCCCCCceeEEecC-CCceeecCCCccceeehhhhhhhhhhhh--------------------
Confidence                         455677899999999999 5899999999999999999987644321                    


Q ss_pred             CCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 004468          275 HGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (751)
Q Consensus       275 ~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~  311 (751)
                       ...+ .|.++..+|++.+|++|..++.+.|-.....
T Consensus       590 -dF~S-QIfSLg~cP~~dWlavGMens~vevlh~skp  624 (705)
T KOG0639|consen  590 -DFSS-QIFSLGYCPTGDWLAVGMENSNVEVLHTSKP  624 (705)
T ss_pred             -hhhh-hheecccCCCccceeeecccCcEEEEecCCc
Confidence             1112 4899999999999999999999988877663

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.79  E-value=3e-18  Score=175.49  Aligned_cols=218  Identities=17%  Similarity=0.266  Sum_probs=166.5

Q ss_pred             ccccEEeccCCCcEEEEEECCCC--CEEEEEeCCCcEEEEeCCCC----eEEEEecccCCcceEEEEEecCCCCcEEEEE
Q 004468           40 LSQERELEGHQGCVNAISWNSKG--SLLISGSDDTHINVWSYSSR----KLLHSIETGHSANVFCTKFVPETSDELVVSG  113 (751)
Q Consensus        40 ~~~~~~L~gH~~~V~~l~~s~dg--~~LaSgs~Dg~I~IWd~~~~----~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sg  113 (751)
                      +....+.+-|.+.|.+++|+|..  +++|+|..-|+|-+||+.+.    ..+..+ ..|.++|.++.|+|.+ ...|++.
T Consensus       176 ~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f-~~hs~~Vs~l~F~P~n-~s~i~ss  253 (498)
T KOG4328|consen  176 YRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLF-TPHSGPVSGLKFSPAN-TSQIYSS  253 (498)
T ss_pred             ceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEe-ccCCccccceEecCCC-hhheeee
Confidence            34456677899999999999964  58999999999999999422    223344 7899999999999996 6889999


Q ss_pred             ECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCcc
Q 004468          114 AGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQEC  193 (751)
Q Consensus       114 s~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~  193 (751)
                      |.||+|++-|++....        +.+..+..-.....++.|+.+++.++ .+..=|.+.+||+|++...          
T Consensus       254 SyDGtiR~~D~~~~i~--------e~v~s~~~d~~~fs~~d~~~e~~~vl-~~~~~G~f~~iD~R~~~s~----------  314 (498)
T KOG4328|consen  254 SYDGTIRLQDFEGNIS--------EEVLSLDTDNIWFSSLDFSAESRSVL-FGDNVGNFNVIDLRTDGSE----------  314 (498)
T ss_pred             ccCceeeeeeecchhh--------HHHhhcCccceeeeeccccCCCccEE-EeecccceEEEEeecCCcc----------
Confidence            9999999999986432        23344444455677888888665544 6666669999999997632          


Q ss_pred             ceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccc
Q 004468          194 RNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLS  273 (751)
Q Consensus       194 ~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (751)
                                    .....-|...|.+++++|..+.+|++++.|++++|||+|.+....+               | .+.
T Consensus       315 --------------~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~s---------------p-~ls  364 (498)
T KOG4328|consen  315 --------------YENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKAS---------------P-FLS  364 (498)
T ss_pred             --------------chhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCC---------------c-cee
Confidence                          0111125568999999999999999999999999999998754322               0 111


Q ss_pred             cCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 004468          274 EHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVN  309 (751)
Q Consensus       274 ~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~  309 (751)
                      ...|.. .|.++.|||.|-.|++.+.|..|+|||..
T Consensus       365 t~~Hrr-sV~sAyFSPs~gtl~TT~~D~~IRv~dss  399 (498)
T KOG4328|consen  365 TLPHRR-SVNSAYFSPSGGTLLTTCQDNEIRVFDSS  399 (498)
T ss_pred             cccccc-eeeeeEEcCCCCceEeeccCCceEEeecc
Confidence            122433 59999999998889999999999999985

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.79  E-value=2.9e-18  Score=172.38  Aligned_cols=230  Identities=17%  Similarity=0.261  Sum_probs=166.1

Q ss_pred             EeccCCCcEEEEEECC-CCCEEEEEeCCCcEEEEeCCCCe-------EEEEecccCCcceEEEEEecCCCCcEEEEEECC
Q 004468           45 ELEGHQGCVNAISWNS-KGSLLISGSDDTHINVWSYSSRK-------LLHSIETGHSANVFCTKFVPETSDELVVSGAGD  116 (751)
Q Consensus        45 ~L~gH~~~V~~l~~s~-dg~~LaSgs~Dg~I~IWd~~~~~-------~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~D  116 (751)
                      .+.||++.|..++|+| +...|||||.|.+|.||.+..+.       .+..+ .||...|.-|+|+|.. .+.|+|++.|
T Consensus        76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L-~gH~rrVg~V~wHPtA-~NVLlsag~D  153 (472)
T KOG0303|consen   76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVEL-YGHQRRVGLVQWHPTA-PNVLLSAGSD  153 (472)
T ss_pred             CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEE-eecceeEEEEeecccc-hhhHhhccCC
Confidence            4689999999999999 56799999999999999986442       34455 7999999999999997 6899999999


Q ss_pred             CcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceE
Q 004468          117 AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNI  196 (751)
Q Consensus       117 g~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~  196 (751)
                      .+|.+||+.++          +.+.++. |.+-|+++.|+. ++.+|++++.|+.|||||.|+++.....          
T Consensus       154 n~v~iWnv~tg----------eali~l~-hpd~i~S~sfn~-dGs~l~TtckDKkvRv~dpr~~~~v~e~----------  211 (472)
T KOG0303|consen  154 NTVSIWNVGTG----------EALITLD-HPDMVYSMSFNR-DGSLLCTTCKDKKVRVIDPRRGTVVSEG----------  211 (472)
T ss_pred             ceEEEEeccCC----------ceeeecC-CCCeEEEEEecc-CCceeeeecccceeEEEcCCCCcEeeec----------
Confidence            99999999976          3355566 999999999998 7789999999999999999998743211          


Q ss_pred             EEecccCceecccCCCCCcc-ceEEEEEeCCCCcEEEEE---eCCCeEEEEeCCCCCCccccCCCCCCCCcccccccccc
Q 004468          197 LLDLRCGAKRSLADPPKQTL-SLKSCDISSTRPHLLLVG---GSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHL  272 (751)
Q Consensus       197 l~~~~~~~~~~~~~~~~~~~-~v~~i~~sp~~~~~l~sg---s~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (751)
                                     ..|.+ .-..+.|-. ++.++.+|   .++..+-|||..+++.-..+          +.+     
T Consensus       212 ---------------~~heG~k~~Raifl~-~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~----------~el-----  260 (472)
T KOG0303|consen  212 ---------------VAHEGAKPARAIFLA-SGKIFTTGFSRMSERQIALWDPNNLEEPIAL----------QEL-----  260 (472)
T ss_pred             ---------------ccccCCCcceeEEec-cCceeeeccccccccceeccCcccccCccee----------EEe-----
Confidence                           01111 112223333 34544444   25788999998876531111          100     


Q ss_pred             ccCCccccceEEEEEcCCCCEEEEEe-CCCcEEEEECCCCCcc---eeeeecCCCceeEEeCCCC
Q 004468          273 SEHGRSSLHLTHVTFSPNGEEVLLSY-SGEHVYLMDVNHAGGR---AMRYTVGDASKIMSFTPTL  333 (751)
Q Consensus       273 ~~~g~~~~~vt~v~fspdg~~Ll~~s-~d~~I~lwdl~~~~~~---~~~~~~~~~~~~~~~sp~~  333 (751)
                          ..+..|.---|.+|.+.|..++ +|+.|+.|.+.+....   .-.|...++.+.+.|-|..
T Consensus       261 ----DtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S~epQRG~g~mPKR  321 (472)
T KOG0303|consen  261 ----DTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSSKEPQRGMGFMPKR  321 (472)
T ss_pred             ----ccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEecccccCCccccccccccc
Confidence                1112366667889988877655 5999999999985311   1223445666777777653

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.79  E-value=2.1e-17  Score=160.33  Aligned_cols=180  Identities=19%  Similarity=0.283  Sum_probs=147.6

Q ss_pred             ccCCCcEEEEEECC-CCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCC-CcEEEEEECCCcEEEEEC
Q 004468           47 EGHQGCVNAISWNS-KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETS-DELVVSGAGDAEVRLFNL  124 (751)
Q Consensus        47 ~gH~~~V~~l~~s~-dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~-~~~l~sgs~Dg~V~vwd~  124 (751)
                      .+|+-.|..+.|-| |.-.+.|+|-|.+++|||..+-+....|  .-.+.|.+-+++|-.. -.+||+|..|-.|++-|+
T Consensus        98 ~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F--~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi  175 (397)
T KOG4283|consen   98 NGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDF--KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDI  175 (397)
T ss_pred             ccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEe--ecCceeehhhcChhhhcceEEEEecCCCcEEEEec
Confidence            57889999999999 5558899999999999999998887777  3567899999998642 247788888999999999


Q ss_pred             CCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCc
Q 004468          125 SRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGA  204 (751)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~  204 (751)
                      ..+          ...+++.+|.+.|.++.|+|....+|++|+.||.||+||+|....|          ..++-......
T Consensus       176 ~SG----------s~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgc----------f~~lD~hn~k~  235 (397)
T KOG4283|consen  176 ASG----------SFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGC----------FRVLDQHNTKR  235 (397)
T ss_pred             cCC----------cceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccce----------eEEeecccCcc
Confidence            975          5589999999999999999988889999999999999999986533          22222222222


Q ss_pred             eecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCC
Q 004468          205 KRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP  249 (751)
Q Consensus       205 ~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~  249 (751)
                      ...+...+.|...|+.++|+. ++.++++++.|..+++|+..++.
T Consensus       236 ~p~~~~n~ah~gkvngla~tS-d~~~l~~~gtd~r~r~wn~~~G~  279 (397)
T KOG4283|consen  236 PPILKTNTAHYGKVNGLAWTS-DARYLASCGTDDRIRVWNMESGR  279 (397)
T ss_pred             Cccccccccccceeeeeeecc-cchhhhhccCccceEEeecccCc
Confidence            223344667889999999999 58999999999999999998775

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.79  E-value=5e-17  Score=177.28  Aligned_cols=245  Identities=15%  Similarity=0.171  Sum_probs=181.1

Q ss_pred             ccccccchhhhccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCC
Q 004468           27 NHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETS  106 (751)
Q Consensus        27 ~~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~  106 (751)
                      +.++++|.  +++.+.+++++++...|+++.=+|--..+|.|..+|+|.|++++.++.+.+|. .-.+.|++++|.-+. 
T Consensus       181 ~G~lql~N--vrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk-~d~g~VtslSFrtDG-  256 (910)
T KOG1539|consen  181 QGRLQLWN--VRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFK-QDWGRVTSLSFRTDG-  256 (910)
T ss_pred             CCcEEEEE--eccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEE-ccccceeEEEeccCC-
Confidence            45566655  67778999999999999999999999999999999999999999999999993 225999999999884 


Q ss_pred             CcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCce-eecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCC
Q 004468          107 DELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSA-LYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPP  185 (751)
Q Consensus       107 ~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~-~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~  185 (751)
                      ..++++|+..|.+-+||++..          +.+. ....|.+.|..+.|.| +..++++++.|..+++|=..++.    
T Consensus       257 ~p~las~~~~G~m~~wDLe~k----------kl~~v~~nah~~sv~~~~fl~-~epVl~ta~~DnSlk~~vfD~~d----  321 (910)
T KOG1539|consen  257 NPLLASGRSNGDMAFWDLEKK----------KLINVTRNAHYGSVTGATFLP-GEPVLVTAGADNSLKVWVFDSGD----  321 (910)
T ss_pred             CeeEEeccCCceEEEEEcCCC----------eeeeeeeccccCCcccceecC-CCceEeeccCCCceeEEEeeCCC----
Confidence            467888888899999999963          2233 3457999999999999 66899999999999999766554    


Q ss_pred             CCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCC--c
Q 004468          186 AGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPP--C  263 (751)
Q Consensus       186 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~--~  263 (751)
                                       |..+.+....+|..+..|+.|.-..++.+.+++.|++.+.+++.+...-.++.....+..  .
T Consensus       322 -----------------g~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk  384 (910)
T KOG1539|consen  322 -----------------GVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKK  384 (910)
T ss_pred             -----------------CcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhccccccccccc
Confidence                             222334455668899999999977789999999999999999876543322222100000  0


Q ss_pred             cccccccccccCCccccceEEEEEcC-----CCCEEEEEeCCCcEEEEECCCCC
Q 004468          264 VNYFCPMHLSEHGRSSLHLTHVTFSP-----NGEEVLLSYSGEHVYLMDVNHAG  312 (751)
Q Consensus       264 ~~~~~~~~~~~~g~~~~~vt~v~fsp-----dg~~Ll~~s~d~~I~lwdl~~~~  312 (751)
                      +..+....     ..-.+|..++|.-     ..+.+.+.-.+..++.|++.+..
T Consensus       385 ~~~~~~~~-----~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~  433 (910)
T KOG1539|consen  385 VNVFSTEK-----LKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKT  433 (910)
T ss_pred             ccccchhh-----hcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcc
Confidence            00110000     0111466666654     23455566668899999999843

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.79  E-value=2.5e-18  Score=180.50  Aligned_cols=249  Identities=19%  Similarity=0.295  Sum_probs=183.3

Q ss_pred             hhccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCC--------CCeEEEEecccCCcceEEEEEecCCCC
Q 004468           36 LVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYS--------SRKLLHSIETGHSANVFCTKFVPETSD  107 (751)
Q Consensus        36 ~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~--------~~~~~~~l~~~h~~~V~~v~fsp~s~~  107 (751)
                      +.++..+..+|..|.++|..++|.+....|++|+.||+|++|++.        .-+++.+| .+|.++|.|++..++  +
T Consensus       280 ~~k~w~ik~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tf-raH~gPVl~v~v~~n--~  356 (577)
T KOG0642|consen  280 FTKKWNIKFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTF-RAHEGPVLCVVVPSN--G  356 (577)
T ss_pred             hheecceeeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEE-ecccCceEEEEecCC--c
Confidence            566667777999999999999999999999999999999999983        23567788 899999999999999  8


Q ss_pred             cEEEEEECCCcEEEEECCCCCCCCCCCCC-CCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCC
Q 004468          108 ELVVSGAGDAEVRLFNLSRFSGRGLDDNA-ITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPA  186 (751)
Q Consensus       108 ~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~-~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~  186 (751)
                      ..+++|+.||+|+.|++. ......+... ......+.||++.|+.+++++ ....|++|+.|||+|+|+.....+|...
T Consensus       357 ~~~ysgg~Dg~I~~w~~p-~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~-~~~~Llscs~DgTvr~w~~~~~~~~~f~  434 (577)
T KOG0642|consen  357 EHCYSGGIDGTIRCWNLP-PNQDPDDSYDPSVLSGTLLGHTDAVWLLALSS-TKDRLLSCSSDGTVRLWEPTEESPCTFG  434 (577)
T ss_pred             eEEEeeccCceeeeeccC-CCCCcccccCcchhccceeccccceeeeeecc-cccceeeecCCceEEeeccCCcCccccC
Confidence            999999999999999887 3332221111 133557889999999999998 5567889999999999998877663111


Q ss_pred             CCCCC---------------------ccceEEEecccCceecccC-----CCCCccceEEEEEeCCCCcEEEEEeCCCeE
Q 004468          187 GSSHQ---------------------ECRNILLDLRCGAKRSLAD-----PPKQTLSLKSCDISSTRPHLLLVGGSDAFA  240 (751)
Q Consensus       187 ~~~~~---------------------~~~~~l~~~~~~~~~~~~~-----~~~~~~~v~~i~~sp~~~~~l~sgs~D~~I  240 (751)
                      .....                     .+...+.+...+....+..     .+.....+.-+.++|. ..+.+++..|+.|
T Consensus       435 ~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~-~~~~~~~hed~~I  513 (577)
T KOG0642|consen  435 EPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPT-ADITFTAHEDRSI  513 (577)
T ss_pred             CccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCC-CCeeEecccCCce
Confidence            00000                     0011111111111111111     0112234667778884 6799999999999


Q ss_pred             EEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 004468          241 RLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (751)
Q Consensus       241 riwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~  311 (751)
                      +++|..+++++.+.                    ..|.. .++++++.|+|-+|++++.|+.|++|.+...
T Consensus       514 r~~dn~~~~~l~s~--------------------~a~~~-svtslai~~ng~~l~s~s~d~sv~l~kld~k  563 (577)
T KOG0642|consen  514 RFFDNKTGKILHSM--------------------VAHKD-SVTSLAIDPNGPYLMSGSHDGSVRLWKLDVK  563 (577)
T ss_pred             ecccccccccchhe--------------------eeccc-eecceeecCCCceEEeecCCceeehhhccch
Confidence            99999988766543                    12333 4999999999999999999999999998774

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.79  E-value=2.9e-18  Score=175.14  Aligned_cols=203  Identities=18%  Similarity=0.282  Sum_probs=160.7

Q ss_pred             EEEEEECC-------CCCEEEEEeCCCcEEEEeCCCCe---EEEEe-----------------cccCCcceEEEEEecCC
Q 004468           53 VNAISWNS-------KGSLLISGSDDTHINVWSYSSRK---LLHSI-----------------ETGHSANVFCTKFVPET  105 (751)
Q Consensus        53 V~~l~~s~-------dg~~LaSgs~Dg~I~IWd~~~~~---~~~~l-----------------~~~h~~~V~~v~fsp~s  105 (751)
                      ..|++|..       -|+++|.|..|..|.|||+.-..   +..++                 ..+|+..|.++.|+...
T Consensus       176 PLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~  255 (463)
T KOG0270|consen  176 PLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNF  255 (463)
T ss_pred             chhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhcccc
Confidence            35777754       36899999999999999975211   00011                 13799999999999875


Q ss_pred             CCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCC
Q 004468          106 SDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPP  185 (751)
Q Consensus       106 ~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~  185 (751)
                       -..|||||.|.+|++||+.++          +|..++..|.+.|.+++|+|..+.+|++|+.|++|.+.|.|.....  
T Consensus       256 -~nVLaSgsaD~TV~lWD~~~g----------~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s--  322 (463)
T KOG0270|consen  256 -RNVLASGSADKTVKLWDVDTG----------KPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNS--  322 (463)
T ss_pred             -ceeEEecCCCceEEEEEcCCC----------CcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCcccc--
Confidence             679999999999999999976          6788888999999999999999999999999999999999974322  


Q ss_pred             CCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCC-CCccccCCCCCCCCcc
Q 004468          186 AGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRML-PPLTSCQKRMSPPPCV  264 (751)
Q Consensus       186 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~-~~~~~~~~~~~~~~~~  264 (751)
                               ..-|.              ....|-.++|+|.....++++..||+|+-+|+|.. +++.++          
T Consensus       323 ---------~~~wk--------------~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~----------  369 (463)
T KOG0270|consen  323 ---------GKEWK--------------FDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTL----------  369 (463)
T ss_pred             ---------CceEE--------------eccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEE----------
Confidence                     11121              24578889999988889999999999999999975 333222          


Q ss_pred             ccccccccccCCccccceEEEEEcCCCC-EEEEEeCCCcEEEEECCCCC
Q 004468          265 NYFCPMHLSEHGRSSLHLTHVTFSPNGE-EVLLSYSGEHVYLMDVNHAG  312 (751)
Q Consensus       265 ~~~~~~~~~~~g~~~~~vt~v~fspdg~-~Ll~~s~d~~I~lwdl~~~~  312 (751)
                                ..|.. .|.++++++.-. .|++++.|+.|+||++....
T Consensus       370 ----------~AHd~-~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~  407 (463)
T KOG0270|consen  370 ----------KAHDD-EISGLSVNIQTPGLLSTASTDKVVKLWKFDVDS  407 (463)
T ss_pred             ----------EeccC-CcceEEecCCCCcceeeccccceEEEEeecCCC
Confidence                      33544 699999998655 56778889999999998743

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.78  E-value=5.3e-18  Score=174.60  Aligned_cols=229  Identities=20%  Similarity=0.290  Sum_probs=177.7

Q ss_pred             cEEeccCC-CcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEE
Q 004468           43 ERELEGHQ-GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRL  121 (751)
Q Consensus        43 ~~~L~gH~-~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~v  121 (751)
                      +..+.|.. -||.|..++   .++++|+..+.|+|||+.. +.++.+.++|...|++|.+.-.  +.+||+++..|.|.|
T Consensus        74 ~~k~~gd~~~Cv~~~s~S---~y~~sgG~~~~Vkiwdl~~-kl~hr~lkdh~stvt~v~YN~~--DeyiAsvs~gGdiii  147 (673)
T KOG4378|consen   74 VRKLTGDNAFCVACASQS---LYEISGGQSGCVKIWDLRA-KLIHRFLKDHQSTVTYVDYNNT--DEYIASVSDGGDIII  147 (673)
T ss_pred             eeccccchHHHHhhhhcc---eeeeccCcCceeeehhhHH-HHHhhhccCCcceeEEEEecCC--cceeEEeccCCcEEE
Confidence            34444432 366666665   7999999999999999984 4555555999999999999988  899999999999999


Q ss_pred             EECCCCCCCCCCCCCCCCceeeccc-CCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEec
Q 004468          122 FNLSRFSGRGLDDNAITPSALYQCH-TRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDL  200 (751)
Q Consensus       122 wd~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~  200 (751)
                      +.+.+...          ...|... ...|.-+.|+|....+|.+++.+|.|.+||+....+.                 
T Consensus       148 h~~~t~~~----------tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~-----------------  200 (673)
T KOG4378|consen  148 HGTKTKQK----------TTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPI-----------------  200 (673)
T ss_pred             EecccCcc----------ccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcc-----------------
Confidence            99997522          2334322 4567789999988788999999999999999876533                 


Q ss_pred             ccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCcccc
Q 004468          201 RCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSL  280 (751)
Q Consensus       201 ~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  280 (751)
                             ......|..+...|+|+|.+..+|++.+.|..|.+||++......          |+.+            ..
T Consensus       201 -------~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~----------~l~y------------~~  251 (673)
T KOG4378|consen  201 -------FHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTD----------RLTY------------SH  251 (673)
T ss_pred             -------cchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccc----------eeee------------cC
Confidence                   222234778889999999999999999999999999998644322          2211            11


Q ss_pred             ceEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcc-eeeeecCCCceeEEeCCCC
Q 004468          281 HLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGR-AMRYTVGDASKIMSFTPTL  333 (751)
Q Consensus       281 ~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~-~~~~~~~~~~~~~~~sp~~  333 (751)
                      +.+.|+|+++|.+|++|...|.|+.||++..+.+ .+...+...+..++|-|..
T Consensus       252 Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~  305 (673)
T KOG4378|consen  252 PLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP  305 (673)
T ss_pred             CcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence            5889999999999999999999999999986533 4445566677788887763

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.78  E-value=2.4e-17  Score=160.74  Aligned_cols=238  Identities=17%  Similarity=0.232  Sum_probs=159.3

Q ss_pred             cccccccccchhhhccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEec
Q 004468           24 PDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP  103 (751)
Q Consensus        24 ~~~~~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp  103 (751)
                      ...+.++++|+-.-...-.-+....|.++|.+++|+.||+.+++|+.|+.+++||+.+++. .++ ..|.++|.++.|.+
T Consensus        46 ~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~-~~v-~~Hd~pvkt~~wv~  123 (347)
T KOG0647|consen   46 GSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQV-SQV-AAHDAPVKTCHWVP  123 (347)
T ss_pred             cccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCe-eee-eecccceeEEEEec
Confidence            3567888888765532222256678999999999999999999999999999999999954 455 68999999999998


Q ss_pred             CCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCC
Q 004468          104 ETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSC  183 (751)
Q Consensus       104 ~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~  183 (751)
                      ..+-..|+|||.|.+|+.||.+..          .++.++. -.++|+++..-.   .+++.+..++.|.+|+|+.+...
T Consensus       124 ~~~~~cl~TGSWDKTlKfWD~R~~----------~pv~t~~-LPeRvYa~Dv~~---pm~vVata~r~i~vynL~n~~te  189 (347)
T KOG0647|consen  124 GMNYQCLVTGSWDKTLKFWDTRSS----------NPVATLQ-LPERVYAADVLY---PMAVVATAERHIAVYNLENPPTE  189 (347)
T ss_pred             CCCcceeEecccccceeecccCCC----------Ceeeeee-ccceeeehhccC---ceeEEEecCCcEEEEEcCCCcch
Confidence            843458999999999999999964          3344443 345566665432   35556666677777777654322


Q ss_pred             CCCCCC---------------------CCccceEEEecccC-----ceecccC----CCCCccceEEEEEeCCCCcEEEE
Q 004468          184 PPAGSS---------------------HQECRNILLDLRCG-----AKRSLAD----PPKQTLSLKSCDISSTRPHLLLV  233 (751)
Q Consensus       184 ~~~~~~---------------------~~~~~~~l~~~~~~-----~~~~~~~----~~~~~~~v~~i~~sp~~~~~l~s  233 (751)
                      ......                     .-+.+..+..+..+     .......    .......|++|+|+|. ...|++
T Consensus       190 ~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~-hgtlvT  268 (347)
T KOG0647|consen  190 FKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPV-HGTLVT  268 (347)
T ss_pred             hhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecc-cceEEE
Confidence            100000                     00001111111110     0000000    1112467899999995 679999


Q ss_pred             EeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeC
Q 004468          234 GGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS  299 (751)
Q Consensus       234 gs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~  299 (751)
                      ++.||++.+||-.....+...+                    .| ..+|++.+|+.+|.+++-+.+
T Consensus       269 aGsDGtf~FWDkdar~kLk~s~--------------------~~-~qpItcc~fn~~G~ifaYA~g  313 (347)
T KOG0647|consen  269 AGSDGTFSFWDKDARTKLKTSE--------------------TH-PQPITCCSFNRNGSIFAYALG  313 (347)
T ss_pred             ecCCceEEEecchhhhhhhccC--------------------cC-CCccceeEecCCCCEEEEEee
Confidence            9999999999987655443321                    12 236999999999998876544

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.78  E-value=3.1e-17  Score=168.21  Aligned_cols=202  Identities=16%  Similarity=0.226  Sum_probs=157.3

Q ss_pred             CCcEEEEEECCCCCEEEEEeCCCcEEEEeCCC--CeEEEEecccCCcceEEEEEecCCCCc-EEEEEECCCcEEEEECCC
Q 004468           50 QGCVNAISWNSKGSLLISGSDDTHINVWSYSS--RKLLHSIETGHSANVFCTKFVPETSDE-LVVSGAGDAEVRLFNLSR  126 (751)
Q Consensus        50 ~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~--~~~~~~l~~~h~~~V~~v~fsp~s~~~-~l~sgs~Dg~V~vwd~~~  126 (751)
                      .+.|++|.|+|...+|++|+.|++++||.+..  ...++.+ .--..+|.++.|.|+  |. .+++++.-...+.||+.+
T Consensus       213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~-~l~~fPi~~a~f~p~--G~~~i~~s~rrky~ysyDle~  289 (514)
T KOG2055|consen  213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSI-HLEKFPIQKAEFAPN--GHSVIFTSGRRKYLYSYDLET  289 (514)
T ss_pred             cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheee-eeccCccceeeecCC--CceEEEecccceEEEEeeccc
Confidence            57899999999999999999999999998753  3345554 335688999999999  66 899999999999999986


Q ss_pred             CCCCCCCCCCCCCceeecccC-CceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCce
Q 004468          127 FSGRGLDDNAITPSALYQCHT-RRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAK  205 (751)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~h~-~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~  205 (751)
                      ..-        .++....++. ..+.....+| ++.+|+..|..|.|.+.-..+++.+.                     
T Consensus       290 ak~--------~k~~~~~g~e~~~~e~FeVSh-d~~fia~~G~~G~I~lLhakT~eli~---------------------  339 (514)
T KOG2055|consen  290 AKV--------TKLKPPYGVEEKSMERFEVSH-DSNFIAIAGNNGHIHLLHAKTKELIT---------------------  339 (514)
T ss_pred             ccc--------ccccCCCCcccchhheeEecC-CCCeEEEcccCceEEeehhhhhhhhh---------------------
Confidence            532        3344444554 3466778889 66899999999999999887776331                     


Q ss_pred             ecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEE
Q 004468          206 RSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHV  285 (751)
Q Consensus       206 ~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v  285 (751)
                           .-+-.+.|..+.|+. +++.|++++.+|.|.+||++...             |+..|..     .|.  ..-+++
T Consensus       340 -----s~KieG~v~~~~fsS-dsk~l~~~~~~GeV~v~nl~~~~-------------~~~rf~D-----~G~--v~gts~  393 (514)
T KOG2055|consen  340 -----SFKIEGVVSDFTFSS-DSKELLASGGTGEVYVWNLRQNS-------------CLHRFVD-----DGS--VHGTSL  393 (514)
T ss_pred             -----eeeeccEEeeEEEec-CCcEEEEEcCCceEEEEecCCcc-------------eEEEEee-----cCc--cceeee
Confidence                 111346789999997 57899999999999999999764             3333321     111  135889


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEECCC
Q 004468          286 TFSPNGEEVLLSYSGEHVYLMDVNH  310 (751)
Q Consensus       286 ~fspdg~~Ll~~s~d~~I~lwdl~~  310 (751)
                      +.|++|.||++|+..|.|.|||.++
T Consensus       394 ~~S~ng~ylA~GS~~GiVNIYd~~s  418 (514)
T KOG2055|consen  394 CISLNGSYLATGSDSGIVNIYDGNS  418 (514)
T ss_pred             eecCCCceEEeccCcceEEEeccch
Confidence            9999999999999999999999877

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.77  E-value=1.9e-17  Score=175.69  Aligned_cols=261  Identities=17%  Similarity=0.276  Sum_probs=173.8

Q ss_pred             EEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEE-ecccCCcceEEEEEecCCCCcEEEEEECCCcEEEE
Q 004468           44 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHS-IETGHSANVFCTKFVPETSDELVVSGAGDAEVRLF  122 (751)
Q Consensus        44 ~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~-l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vw  122 (751)
                      +....|.+.|..+.|-|...+|++++.|.++++||++..+++.. +..||.+.|-+++|.|.. ...|++|+.||.|.||
T Consensus        94 k~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n-~~vF~tGgRDg~illW  172 (720)
T KOG0321|consen   94 KKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTN-PAVFCTGGRDGEILLW  172 (720)
T ss_pred             cccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCC-CcceeeccCCCcEEEE
Confidence            44567999999999999667999999999999999998887765 237999999999999995 6789999999999999


Q ss_pred             ECCCCCCCCC-----------CC--CC----CCCceeecccCCceeE---EEEecCCCCEEEEEeC-CCcEEEEecCCCC
Q 004468          123 NLSRFSGRGL-----------DD--NA----ITPSALYQCHTRRVKK---LAVEVGNPHVVWSASE-DGTLRQHDFRQGS  181 (751)
Q Consensus       123 d~~~~~~~~~-----------~~--~~----~~~~~~~~~h~~~V~~---l~~sp~~~~~l~s~s~-Dg~I~iwDlr~~~  181 (751)
                      |++......+           ..  ..    .+.+.....|...|.+   +.+.. |...|+|+|. |+.|++||+|...
T Consensus       173 D~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fk-De~tlaSaga~D~~iKVWDLRk~~  251 (720)
T KOG0321|consen  173 DCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFK-DESTLASAGAADSTIKVWDLRKNY  251 (720)
T ss_pred             EEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEe-ccceeeeccCCCcceEEEeecccc
Confidence            9985431110           00  00    1112233345444444   33444 5578888887 9999999999976


Q ss_pred             CCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCC
Q 004468          182 SCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPP  261 (751)
Q Consensus       182 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~  261 (751)
                      ........              ....+.........+.++..... |.+|.+.+.|+.|++|+++.....-         
T Consensus       252 ~~~r~ep~--------------~~~~~~t~skrs~G~~nL~lDss-Gt~L~AsCtD~sIy~ynm~s~s~sP---------  307 (720)
T KOG0321|consen  252 TAYRQEPR--------------GSDKYPTHSKRSVGQVNLILDSS-GTYLFASCTDNSIYFYNMRSLSISP---------  307 (720)
T ss_pred             cccccCCC--------------cccCccCcccceeeeEEEEecCC-CCeEEEEecCCcEEEEeccccCcCc---------
Confidence            43111110              00011111223456777777775 5666666779999999998764210         


Q ss_pred             CccccccccccccCCccccc-eEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccee-eeecCCCceeEEeCCCCCCcccC
Q 004468          262 PCVNYFCPMHLSEHGRSSLH-LTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAM-RYTVGDASKIMSFTPTLNGLELQ  339 (751)
Q Consensus       262 ~~~~~~~~~~~~~~g~~~~~-vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~-~~~~~~~~~~~~~sp~~~~~~~~  339 (751)
                        +..|       .|+.... -..-..+||+.+|++|+.|+..|+|.+.+...... +..+..-+..++|.|........
T Consensus       308 --~~~~-------sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~T  378 (720)
T KOG0321|consen  308 --VAEF-------SGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVAT  378 (720)
T ss_pred             --hhhc-------cCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCcee
Confidence              1111       1111111 11234789999999999999999999999764433 34445556667777765444333

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.77  E-value=1.3e-16  Score=170.81  Aligned_cols=241  Identities=12%  Similarity=0.122  Sum_probs=179.9

Q ss_pred             ccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccC-CcceEEEEEecCCCCcEEEEEECCCcEEEEECC
Q 004468           47 EGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGH-SANVFCTKFVPETSDELVVSGAGDAEVRLFNLS  125 (751)
Q Consensus        47 ~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h-~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~  125 (751)
                      .--..+|.+|+|+.+.+.||.+-.||.|-||++...-....+..++ ...|-+++|++.   ..|.|.+.+|+|.-||+.
T Consensus        22 d~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~---~RLFS~g~sg~i~EwDl~   98 (691)
T KOG2048|consen   22 DYKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEG---GRLFSSGLSGSITEWDLH   98 (691)
T ss_pred             eeeccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccC---CeEEeecCCceEEEEecc
Confidence            3456789999999999999999999999999998765444332444 578999999954   688899999999999999


Q ss_pred             CCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCce
Q 004468          126 RFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAK  205 (751)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~  205 (751)
                      +.          +++..+..-.+.|++++.+| ....++.|++||.+..++...+...                      
T Consensus        99 ~l----------k~~~~~d~~gg~IWsiai~p-~~~~l~IgcddGvl~~~s~~p~~I~----------------------  145 (691)
T KOG2048|consen   99 TL----------KQKYNIDSNGGAIWSIAINP-ENTILAIGCDDGVLYDFSIGPDKIT----------------------  145 (691)
T ss_pred             cC----------ceeEEecCCCcceeEEEeCC-ccceEEeecCCceEEEEecCCceEE----------------------
Confidence            75          66788888899999999999 5588889999997766666554311                      


Q ss_pred             ecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEE
Q 004468          206 RSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHV  285 (751)
Q Consensus       206 ~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v  285 (751)
                       .-.....++..|.+++|+|+ +..|++|+.||.||+||..+...+....           .....+..  ....-|++|
T Consensus       146 -~~r~l~rq~sRvLslsw~~~-~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~-----------~~~d~l~k--~~~~iVWSv  210 (691)
T KOG2048|consen  146 -YKRSLMRQKSRVLSLSWNPT-GTKIAGGSIDGVIRIWDVKSGQTLHIIT-----------MQLDRLSK--REPTIVWSV  210 (691)
T ss_pred             -EEeecccccceEEEEEecCC-ccEEEecccCceEEEEEcCCCceEEEee-----------eccccccc--CCceEEEEE
Confidence             11122335688999999995 6889999999999999999876543110           00011111  112238899


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEECCCCCcceeeeecCCCceeEEeCCCCCCcccC
Q 004468          286 TFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQ  339 (751)
Q Consensus       286 ~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~  339 (751)
                      .|-.++ .|++|-+-|+|.+||...+........+...+..++..+..+.+..+
T Consensus       211 ~~Lrd~-tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsa  263 (691)
T KOG2048|consen  211 LFLRDS-TIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSA  263 (691)
T ss_pred             EEeecC-cEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEc
Confidence            998776 47889899999999999987666666666666667776665555443

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.75  E-value=1.4e-17  Score=171.54  Aligned_cols=222  Identities=13%  Similarity=0.234  Sum_probs=168.2

Q ss_pred             CCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEE--EEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCC
Q 004468           50 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLL--HSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRF  127 (751)
Q Consensus        50 ~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~--~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~  127 (751)
                      ...|.++...|||+.|++|+.-.+|.|||+......  ..+ +...-+...++.+|+  .++.++|..||.|.|||+...
T Consensus       465 dnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikael-tssapaCyALa~spD--akvcFsccsdGnI~vwDLhnq  541 (705)
T KOG0639|consen  465 DNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAEL-TSSAPACYALAISPD--AKVCFSCCSDGNIAVWDLHNQ  541 (705)
T ss_pred             ccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhc-CCcchhhhhhhcCCc--cceeeeeccCCcEEEEEcccc
Confidence            456788999999999999999999999998755432  233 344456788999999  588899999999999999864


Q ss_pred             CCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCC--------CCCCccceEEEe
Q 004468          128 SGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAG--------SSHQECRNILLD  199 (751)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~--------~~~~~~~~~l~~  199 (751)
                                ..+..|++|++.+.||.+++ ++..||||+-|.+||.||+|++..+..-.        ..-.....+...
T Consensus       542 ----------~~VrqfqGhtDGascIdis~-dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavG  610 (705)
T KOG0639|consen  542 ----------TLVRQFQGHTDGASCIDISK-DGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVG  610 (705)
T ss_pred             ----------eeeecccCCCCCceeEEecC-CCceeecCCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeee
Confidence                      45889999999999999999 77999999999999999999987652110        000111123333


Q ss_pred             cccCceeccc-------CCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCcccccccccc
Q 004468          200 LRCGAKRSLA-------DPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHL  272 (751)
Q Consensus       200 ~~~~~~~~~~-------~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (751)
                      +..+.+..+.       ....|...|-++.|.+. ++++++.+.|+.+..|..--+..+..                   
T Consensus       611 Mens~vevlh~skp~kyqlhlheScVLSlKFa~c-GkwfvStGkDnlLnawrtPyGasiFq-------------------  670 (705)
T KOG0639|consen  611 MENSNVEVLHTSKPEKYQLHLHESCVLSLKFAYC-GKWFVSTGKDNLLNAWRTPYGASIFQ-------------------  670 (705)
T ss_pred             cccCcEEEEecCCccceeecccccEEEEEEeccc-CceeeecCchhhhhhccCccccceee-------------------
Confidence            3333332222       12336778999999994 89999999999999998765443211                   


Q ss_pred             ccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004468          273 SEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDV  308 (751)
Q Consensus       273 ~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl  308 (751)
                         ......|.++.+|.|.++|++|++|....||.+
T Consensus       671 ---skE~SsVlsCDIS~ddkyIVTGSGdkkATVYeV  703 (705)
T KOG0639|consen  671 ---SKESSSVLSCDISFDDKYIVTGSGDKKATVYEV  703 (705)
T ss_pred             ---ccccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence               112336999999999999999999998888875

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.75  E-value=6.6e-17  Score=156.55  Aligned_cols=239  Identities=16%  Similarity=0.261  Sum_probs=175.0

Q ss_pred             hhccccccEEec-cCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeE-EEEe----cccCCcceEEEEEecCCCCcE
Q 004468           36 LVRRLSQERELE-GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKL-LHSI----ETGHSANVFCTKFVPETSDEL  109 (751)
Q Consensus        36 ~i~~~~~~~~L~-gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~-~~~l----~~~h~~~V~~v~fsp~s~~~~  109 (751)
                      ...++.++..|. .|-+.|+||.|.|++..||+-. |..|.+|++..... +..+    ..+|....++-+|+|..++..
T Consensus       108 ~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnq  186 (370)
T KOG1007|consen  108 NSSTLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQ  186 (370)
T ss_pred             ccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccce
Confidence            344577777776 6778999999999999999886 88999999987655 3332    235677899999999877888


Q ss_pred             EEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCC
Q 004468          110 VVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSS  189 (751)
Q Consensus       110 l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~  189 (751)
                      +++. .|+++..||+++..         +....-..|...|..+.|+|...++|+||+.||.|++||+|..+..      
T Consensus       187 v~tt-~d~tl~~~D~RT~~---------~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~p------  250 (370)
T KOG1007|consen  187 VATT-SDSTLQFWDLRTMK---------KNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFP------  250 (370)
T ss_pred             EEEe-CCCcEEEEEccchh---------hhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCcc------
Confidence            8876 58999999999642         2234456799999999999987889999999999999999987643      


Q ss_pred             CCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCC--------CC
Q 004468          190 HQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMS--------PP  261 (751)
Q Consensus       190 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~--------~~  261 (751)
                                        +...++|..+|.++.|+|....+|++|+.|..|.+|-......-..++....        ..
T Consensus       251 ------------------v~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dse  312 (370)
T KOG1007|consen  251 ------------------VQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSE  312 (370)
T ss_pred             ------------------ccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhH
Confidence                              5556778999999999998888999999999999998865542111111000        00


Q ss_pred             Ccccccccccccc-CCccccceEEEEEcCCCCEEEEE-eCCCcEEEEECCC
Q 004468          262 PCVNYFCPMHLSE-HGRSSLHLTHVTFSPNGEEVLLS-YSGEHVYLMDVNH  310 (751)
Q Consensus       262 ~~~~~~~~~~~~~-~g~~~~~vt~v~fspdg~~Ll~~-s~d~~I~lwdl~~  310 (751)
                      .-++.+..+.+.. ..|.. .|++++||.-..+++++ +.||.+.|=.+..
T Consensus       313 er~kpL~dg~l~tydehED-SVY~~aWSsadPWiFASLSYDGRviIs~V~r  362 (370)
T KOG1007|consen  313 ERVKPLQDGQLETYDEHED-SVYALAWSSADPWIFASLSYDGRVIISSVPR  362 (370)
T ss_pred             Hhccccccccccccccccc-ceEEEeeccCCCeeEEEeccCceEEeecCCh
Confidence            0011111111111 12444 59999999977766554 6699988866543

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.75  E-value=1.4e-16  Score=175.83  Aligned_cols=255  Identities=14%  Similarity=0.177  Sum_probs=187.0

Q ss_pred             ccccccchhhhccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCC
Q 004468           27 NHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETS  106 (751)
Q Consensus        27 ~~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~  106 (751)
                      +..+++|......-. -.++.-|...|.+++-.  +.+|++|+.+++|.+|...++..-..+ ...+-++.+++|+-+  
T Consensus        34 dg~ir~~~~~sd~e~-P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~~~~~iL-~Rftlp~r~~~v~g~--  107 (933)
T KOG1274|consen   34 DGDIRKWKTNSDEEE-PETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPSGEEDTIL-ARFTLPIRDLAVSGS--  107 (933)
T ss_pred             CCceEEeecCCcccC-CchhhccCceeEEEeec--ccceEEeeccceEEEeeCCCCCcccee-eeeeccceEEEEecC--
Confidence            444555544333211 22233377777777764  559999999999999999877655444 566889999999988  


Q ss_pred             CcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCC
Q 004468          107 DELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPA  186 (751)
Q Consensus       107 ~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~  186 (751)
                      |.++|.||.|-.|++-++...          .....+.+|..+|.++.|+| .+.+||+.+-||.|++||+.++......
T Consensus       108 g~~iaagsdD~~vK~~~~~D~----------s~~~~lrgh~apVl~l~~~p-~~~fLAvss~dG~v~iw~~~~~~~~~tl  176 (933)
T KOG1274|consen  108 GKMIAAGSDDTAVKLLNLDDS----------SQEKVLRGHDAPVLQLSYDP-KGNFLAVSSCDGKVQIWDLQDGILSKTL  176 (933)
T ss_pred             CcEEEeecCceeEEEEecccc----------chheeecccCCceeeeeEcC-CCCEEEEEecCceEEEEEcccchhhhhc
Confidence            899999999999999999875          33678999999999999999 7799999999999999999987643211


Q ss_pred             CCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCcccc
Q 004468          187 GSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNY  266 (751)
Q Consensus       187 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~  266 (751)
                      .... .+                ........+..++|+|+ +..+++.+.|+.|++|++........+..          
T Consensus       177 ~~v~-k~----------------n~~~~s~i~~~~aW~Pk-~g~la~~~~d~~Vkvy~r~~we~~f~Lr~----------  228 (933)
T KOG1274|consen  177 TGVD-KD----------------NEFILSRICTRLAWHPK-GGTLAVPPVDNTVKVYSRKGWELQFKLRD----------  228 (933)
T ss_pred             ccCC-cc----------------ccccccceeeeeeecCC-CCeEEeeccCCeEEEEccCCceeheeecc----------
Confidence            1100 00                00001345677899995 56777788999999999988765433321          


Q ss_pred             ccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcceeeeecCCCceeEEeCCCCCCcccC
Q 004468          267 FCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQ  339 (751)
Q Consensus       267 ~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~  339 (751)
                              .-+.. .++.+.|+|+|+||++++.+|.|.|||.++-.   . ......+..++|.|..+.+.+-
T Consensus       229 --------~~~ss-~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~---~-~~~~~~Vc~~aw~p~~n~it~~  288 (933)
T KOG1274|consen  229 --------KLSSS-KFSDLQWSPNGKYIAASTLDGQILVWNVDTHE---R-HEFKRAVCCEAWKPNANAITLI  288 (933)
T ss_pred             --------ccccc-ceEEEEEcCCCcEEeeeccCCcEEEEecccch---h-ccccceeEEEecCCCCCeeEEE
Confidence                    11222 38999999999999999999999999999711   1 3345567778888888877544

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.73  E-value=9.8e-18  Score=182.10  Aligned_cols=281  Identities=17%  Similarity=0.208  Sum_probs=194.6

Q ss_pred             cccchhhhccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcE
Q 004468           30 LQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDEL  109 (751)
Q Consensus        30 l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~  109 (751)
                      +......+++++.++.|.||...|.|+.|...|.++++|++|..|+||.+.+..++... .||.+.|+.++.+.+  +.+
T Consensus       170 ~akPgtmvqkmk~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~-rGhs~ditdlavs~~--n~~  246 (1113)
T KOG0644|consen  170 IAKPGTMVQKMKNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASC-RGHSGDITDLAVSSN--NTM  246 (1113)
T ss_pred             ecCcHHHHHHHHHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccC-CCCccccchhccchh--hhh
Confidence            34445689999999999999999999999999999999999999999999999999999 899999999999988  688


Q ss_pred             EEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecC-CCCCCCCC--
Q 004468          110 VVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFR-QGSSCPPA--  186 (751)
Q Consensus       110 l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr-~~~~~~~~--  186 (751)
                      ++++|.|..|++|-+..+          .++.++.+|++.|++|+|+|.     .+.+.||++++||.| ......+.  
T Consensus       247 iaaaS~D~vIrvWrl~~~----------~pvsvLrghtgavtaiafsP~-----~sss~dgt~~~wd~r~~~~~y~prp~  311 (1113)
T KOG0644|consen  247 IAAASNDKVIRVWRLPDG----------APVSVLRGHTGAVTAIAFSPR-----ASSSDDGTCRIWDARLEPRIYVPRPL  311 (1113)
T ss_pred             hhhcccCceEEEEecCCC----------chHHHHhccccceeeeccCcc-----ccCCCCCceEeccccccccccCCCCC
Confidence            999999999999999975          779999999999999999993     288999999999999 22111100  


Q ss_pred             -CC-CCCccceEE----EecccCcee---cccCC---CCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCcccc
Q 004468          187 -GS-SHQECRNIL----LDLRCGAKR---SLADP---PKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSC  254 (751)
Q Consensus       187 -~~-~~~~~~~~l----~~~~~~~~~---~~~~~---~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~  254 (751)
                       .. ....+...+    ....++...   .....   ..+...+.-+.++.+-..+.+++-.+..+.+|++.++..+..+
T Consensus       312 ~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l  391 (1113)
T KOG0644|consen  312 KFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNL  391 (1113)
T ss_pred             CcccccceeeeeccccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhh
Confidence             00 000110000    000111000   00000   0011111111111112245555666777778887766533221


Q ss_pred             CCCCCCCCccccccccccccCCccccceEEEEEcCCCC-EEEEEeCCCcEEEEECCCCCcceeeeecCCCceeEEeCCCC
Q 004468          255 QKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGE-EVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTL  333 (751)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~-~Ll~~s~d~~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp~~  333 (751)
                                          .+|.. .+.-+.++|-.. ...+++.||.+.|||+-.+......+......-..+|++++
T Consensus       392 --------------------~ghsd-~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdg  450 (1113)
T KOG0644|consen  392 --------------------MGHSD-EVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDG  450 (1113)
T ss_pred             --------------------ccccc-ceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecccceeeccccCCCC
Confidence                                23444 488899999555 45577889999999999987666666444445556788888


Q ss_pred             CCcccCCCcccccccc
Q 004468          334 NGLELQPPIHDFLQTN  349 (751)
Q Consensus       334 ~~~~~~~~~~~~~~~~  349 (751)
                      ..+.+....++....|
T Consensus       451 ts~~lsd~hgql~i~g  466 (1113)
T KOG0644|consen  451 TSIALSDDHGQLYILG  466 (1113)
T ss_pred             ceEecCCCCCceEEec
Confidence            7777776666555444

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.73  E-value=2.4e-17  Score=186.23  Aligned_cols=239  Identities=20%  Similarity=0.290  Sum_probs=176.7

Q ss_pred             cccEEeccCCCcEEEEEECCCCCE----EEEEeCCCcEEEEeCCC---C---eEEEEecccCCcceEEEEEecCCCCcEE
Q 004468           41 SQERELEGHQGCVNAISWNSKGSL----LISGSDDTHINVWSYSS---R---KLLHSIETGHSANVFCTKFVPETSDELV  110 (751)
Q Consensus        41 ~~~~~L~gH~~~V~~l~~s~dg~~----LaSgs~Dg~I~IWd~~~---~---~~~~~l~~~h~~~V~~v~fsp~s~~~~l  110 (751)
                      ++...+. -....+.|+|.+.|..    ||.|..||.|.+||...   +   ..+.+. ..|++.|..+.|++.. +++|
T Consensus        56 k~~~s~~-s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~-~~h~G~V~gLDfN~~q-~nlL  132 (1049)
T KOG0307|consen   56 KPVGSLQ-SSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATK-SKHTGPVLGLDFNPFQ-GNLL  132 (1049)
T ss_pred             ccccccc-ccccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhh-cccCCceeeeeccccC-Ccee
Confidence            4444443 2456789999997765    89999999999999764   2   233344 6899999999999996 7899


Q ss_pred             EEEECCCcEEEEECCCCCCCCCCCCCCCCcee-ecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCC
Q 004468          111 VSGAGDAEVRLFNLSRFSGRGLDDNAITPSAL-YQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSS  189 (751)
Q Consensus       111 ~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~-~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~  189 (751)
                      ++|+.||.|.|||+...+.         +... -..-.+.|++++|+....++|++++.+|++.|||+|..+.+...   
T Consensus       133 ASGa~~geI~iWDlnn~~t---------P~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~l---  200 (1049)
T KOG0307|consen  133 ASGADDGEILIWDLNKPET---------PFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKL---  200 (1049)
T ss_pred             eccCCCCcEEEeccCCcCC---------CCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCccccc---
Confidence            9999999999999996421         1111 22346789999999878899999999999999999998643211   


Q ss_pred             CCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCC---CeEEEEeCCCCCCccccCCCCCCCCcccc
Q 004468          190 HQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD---AFARLYDRRMLPPLTSCQKRMSPPPCVNY  266 (751)
Q Consensus       190 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D---~~IriwD~~~~~~~~~~~~~~~~~~~~~~  266 (751)
                                         .... ....+..++|+|++...|++++.|   ..|.+||+|....            .++.
T Consensus       201 -------------------s~~~-~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~ass------------P~k~  248 (1049)
T KOG0307|consen  201 -------------------SDTP-GRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASS------------PLKI  248 (1049)
T ss_pred             -------------------ccCC-CccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCC------------chhh
Confidence                               1111 124578899999988888888876   5799999986431            1111


Q ss_pred             ccccccccCCccccceEEEEEcCCC-CEEEEEeCCCcEEEEECCCCCcceeeeecCCCceeEEeCCCCC
Q 004468          267 FCPMHLSEHGRSSLHLTHVTFSPNG-EEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLN  334 (751)
Q Consensus       267 ~~~~~~~~~g~~~~~vt~v~fspdg-~~Ll~~s~d~~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp~~~  334 (751)
                      +       .+|.. .|.++.|++.+ .+|++++.|+.|.+|+.++++.....-..+.....+.|.|...
T Consensus       249 ~-------~~H~~-GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P  309 (1049)
T KOG0307|consen  249 L-------EGHQR-GILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNP  309 (1049)
T ss_pred             h-------ccccc-ceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCc
Confidence            1       34555 59999999966 7888888999999999999754444444455566677777665

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.73  E-value=1.1e-16  Score=155.23  Aligned_cols=233  Identities=16%  Similarity=0.274  Sum_probs=173.0

Q ss_pred             cCCCcEEEEEECCCC-----CEEEEEeCCCcEEEEeCCC--CeEE-EE-e----cccCCcceEEEEEecCCCCcEEEEEE
Q 004468           48 GHQGCVNAISWNSKG-----SLLISGSDDTHINVWSYSS--RKLL-HS-I----ETGHSANVFCTKFVPETSDELVVSGA  114 (751)
Q Consensus        48 gH~~~V~~l~~s~dg-----~~LaSgs~Dg~I~IWd~~~--~~~~-~~-l----~~~h~~~V~~v~fsp~s~~~~l~sgs  114 (751)
                      .|.-+++.+.|.|+.     .+|||.++  .++||.+..  .+.. .. +    ...+.+++++..|+.-. .++|.++|
T Consensus        94 d~~YP~tK~~wiPd~~g~~pdlLATs~D--~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~d-p~~igtSS  170 (364)
T KOG0290|consen   94 DHPYPVTKLMWIPDSKGVYPDLLATSSD--FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVD-PNLIGTSS  170 (364)
T ss_pred             CCCCCccceEecCCccccCcchhhcccC--eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCC-cceeEeec
Confidence            588999999999976     47777765  799999863  2211 11 1    13567899999999764 68999999


Q ss_pred             CCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccc
Q 004468          115 GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECR  194 (751)
Q Consensus       115 ~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~  194 (751)
                      -|.+..|||++++..       ......+-.|...|..|+|...+..+|+|.|.||+||+||+|.-...           
T Consensus       171 iDTTCTiWdie~~~~-------~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHS-----------  232 (364)
T KOG0290|consen  171 IDTTCTIWDIETGVS-------GTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHS-----------  232 (364)
T ss_pred             ccCeEEEEEEeeccc-------cceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccc-----------
Confidence            999999999997511       12245677899999999999866789999999999999999986532           


Q ss_pred             eEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCC-CeEEEEeCCCCCCccccCCCCCCCCccccccccccc
Q 004468          195 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD-AFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLS  273 (751)
Q Consensus       195 ~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D-~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (751)
                      .+++           ..+....++..++|++.+++++++-..| ..|.|.|+|....            .+..+      
T Consensus       233 TIIY-----------E~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~t------------pva~L------  283 (364)
T KOG0290|consen  233 TIIY-----------EDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCT------------PVARL------  283 (364)
T ss_pred             eEEe-----------cCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCc------------ceehh------
Confidence            2333           2233356788999999999999997766 5799999997431            11111      


Q ss_pred             cCCccccceEEEEEcCC-CCEEEEEeCCCcEEEEECCCCCc-----ceeeeecCCCceeEEeCCC
Q 004468          274 EHGRSSLHLTHVTFSPN-GEEVLLSYSGEHVYLMDVNHAGG-----RAMRYTVGDASKIMSFTPT  332 (751)
Q Consensus       274 ~~g~~~~~vt~v~fspd-g~~Ll~~s~d~~I~lwdl~~~~~-----~~~~~~~~~~~~~~~~sp~  332 (751)
                       ++|.. .|+.++|.|. ...|++++.|.++.|||+.....     +...+..++-++.+.|+|.
T Consensus       284 -~~H~a-~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~  346 (364)
T KOG0290|consen  284 -RNHQA-SVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSS  346 (364)
T ss_pred             -hcCcc-cccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhhccceeeeeeeccc
Confidence             45665 5999999995 56889999999999999987433     2334455666677777754

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.72  E-value=1.1e-16  Score=157.72  Aligned_cols=241  Identities=16%  Similarity=0.225  Sum_probs=169.1

Q ss_pred             hccccccEEeccCCCcEEEEEECCCC-CEEEEEeCCCcEEEEeCCCCeEEEEe--cccCCcceEEEEEecCCCCcEEEEE
Q 004468           37 VRRLSQERELEGHQGCVNAISWNSKG-SLLISGSDDTHINVWSYSSRKLLHSI--ETGHSANVFCTKFVPETSDELVVSG  113 (751)
Q Consensus        37 i~~~~~~~~L~gH~~~V~~l~~s~dg-~~LaSgs~Dg~I~IWd~~~~~~~~~l--~~~h~~~V~~v~fsp~s~~~~l~sg  113 (751)
                      ..+.++...|.||.+.||.|.|.|+. ++|++||.|..|++||+.+..++..+  ..||.+.|.++.|+++  |.+|+||
T Consensus       122 ~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~--gd~i~Sc  199 (385)
T KOG1034|consen  122 VVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLD--GDRIASC  199 (385)
T ss_pred             cchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCC--CCeeecc
Confidence            44556778899999999999999964 79999999999999999999999887  2479999999999999  8999999


Q ss_pred             ECCCcEEEEECCCCCC--CCC------CCCCC---------CCce-eecccCCceeEEEEecCCCCEEEEEeCCCcEEEE
Q 004468          114 AGDAEVRLFNLSRFSG--RGL------DDNAI---------TPSA-LYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQH  175 (751)
Q Consensus       114 s~Dg~V~vwd~~~~~~--~~~------~~~~~---------~~~~-~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iw  175 (751)
                      +.|.++++|++...+-  ...      .....         -|.. +-.-|+..|-|+.|-   +.+++|-|-++.|..|
T Consensus       200 GmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~---gd~ilSkscenaI~~w  276 (385)
T KOG1034|consen  200 GMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF---GDFILSKSCENAIVCW  276 (385)
T ss_pred             CCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH---hhheeecccCceEEEE
Confidence            9999999999983211  000      00000         0111 234589999999996   3688899999999999


Q ss_pred             ecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccC
Q 004468          176 DFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQ  255 (751)
Q Consensus       176 Dlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~  255 (751)
                      ....-+...........+..++-.+.         .+.-..+....+|+| -.++||.|...|.|.+||++...+.    
T Consensus       277 ~pgkl~e~~~~vkp~es~~Ti~~~~~---------~~~c~iWfirf~~d~-~~~~la~gnq~g~v~vwdL~~~ep~----  342 (385)
T KOG1034|consen  277 KPGKLEESIHNVKPPESATTILGEFD---------YPMCDIWFIRFAFDP-WQKMLALGNQSGKVYVWDLDNNEPP----  342 (385)
T ss_pred             ecchhhhhhhccCCCccceeeeeEec---------cCccceEEEEEeecH-HHHHHhhccCCCcEEEEECCCCCCc----
Confidence            87322111000001111122222111         111223444556677 3689999999999999999976542    


Q ss_pred             CCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 004468          256 KRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVN  309 (751)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~  309 (751)
                            .|..     +..  ......|...+||.||..|+....|+.|.-||.-
T Consensus       343 ------~~tt-----l~~--s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv  383 (385)
T KOG1034|consen  343 ------KCTT-----LTH--SKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV  383 (385)
T ss_pred             ------cCce-----EEe--ccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence                  1111     111  1122358999999999999999999999999854

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.71  E-value=2.8e-17  Score=185.70  Aligned_cols=219  Identities=17%  Similarity=0.206  Sum_probs=174.6

Q ss_pred             ccccccEEeccCCCcEEEEEECCCC-CEEEEEeCCCcEEEEeCCCCeEEEEe-cccCCcceEEEEEecCCCCcEEEEEEC
Q 004468           38 RRLSQERELEGHQGCVNAISWNSKG-SLLISGSDDTHINVWSYSSRKLLHSI-ETGHSANVFCTKFVPETSDELVVSGAG  115 (751)
Q Consensus        38 ~~~~~~~~L~gH~~~V~~l~~s~dg-~~LaSgs~Dg~I~IWd~~~~~~~~~l-~~~h~~~V~~v~fsp~s~~~~l~sgs~  115 (751)
                      .....+.++..|+|.|..|.|++.. ++||||+.||.|.|||+..-....+. ...-...|.+++|+..- ..+|++++.
T Consensus       104 ~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkv-qhILAS~s~  182 (1049)
T KOG0307|consen  104 ASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKV-SHILASGSP  182 (1049)
T ss_pred             cchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhh-hHHhhccCC
Confidence            3445677889999999999999965 49999999999999999875443333 12356789999999874 578999999


Q ss_pred             CCcEEEEECCCCCCCCCCCCCCCCceeecccCC--ceeEEEEecCCCCEEEEEeCCC---cEEEEecCCCCCCCCCCCCC
Q 004468          116 DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTR--RVKKLAVEVGNPHVVWSASEDG---TLRQHDFRQGSSCPPAGSSH  190 (751)
Q Consensus       116 Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~--~V~~l~~sp~~~~~l~s~s~Dg---~I~iwDlr~~~~~~~~~~~~  190 (751)
                      +|.+.|||++..          +++..+..|..  .+..++|+|++...++++++|.   .|.+||+|.....       
T Consensus       183 sg~~~iWDlr~~----------~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP-------  245 (1049)
T KOG0307|consen  183 SGRAVIWDLRKK----------KPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSP-------  245 (1049)
T ss_pred             CCCceeccccCC----------CcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCc-------
Confidence            999999999964          34555554544  4778999998888888888765   6899999986543       


Q ss_pred             CccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCcccccccc
Q 004468          191 QECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPM  270 (751)
Q Consensus       191 ~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (751)
                                       +.....|...|.+++|++.|.+++++++.|+.|.+|+..+++.+..+..              
T Consensus       246 -----------------~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~--------------  294 (1049)
T KOG0307|consen  246 -----------------LKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPA--------------  294 (1049)
T ss_pred             -----------------hhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCC--------------
Confidence                             2223458889999999999999999999999999999999876655421              


Q ss_pred             ccccCCccccceEEEEEcCCCC-EEEEEeCCCcEEEEECCCCC
Q 004468          271 HLSEHGRSSLHLTHVTFSPNGE-EVLLSYSGEHVYLMDVNHAG  312 (751)
Q Consensus       271 ~~~~~g~~~~~vt~v~fspdg~-~Ll~~s~d~~I~lwdl~~~~  312 (751)
                             .+.++..+.|+|... .+++++-||.|-||.+.+..
T Consensus       295 -------~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  295 -------QGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD  330 (1049)
T ss_pred             -------CCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence                   123689999999776 67777889999999998865

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.71  E-value=5.4e-17  Score=159.97  Aligned_cols=271  Identities=15%  Similarity=0.177  Sum_probs=178.3

Q ss_pred             cCCCcEEEEEECCC----CCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEE
Q 004468           48 GHQGCVNAISWNSK----GSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFN  123 (751)
Q Consensus        48 gH~~~V~~l~~s~d----g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd  123 (751)
                      .|...-..++|+-+    ..+||.|+.-|.|+|.|+.+++....+ .+|...|+.++|.|.. .++|++||.|.+||+|+
T Consensus        87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~-~ghG~sINeik~~p~~-~qlvls~SkD~svRlwn  164 (385)
T KOG1034|consen   87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNY-RGHGGSINEIKFHPDR-PQLVLSASKDHSVRLWN  164 (385)
T ss_pred             CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccce-eccCccchhhhcCCCC-CcEEEEecCCceEEEEe
Confidence            37778888999764    348999999999999999999999888 8999999999999996 68999999999999999


Q ss_pred             CCCCCCCCCCCCCCCCcee---ecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCC---CCCCccceEE
Q 004468          124 LSRFSGRGLDDNAITPSAL---YQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAG---SSHQECRNIL  197 (751)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~---~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~---~~~~~~~~~l  197 (751)
                      +++.          .++..   +.||.+.|.++.|++ ++..|+|||.|.+|++|++...+......   .-..+.....
T Consensus       165 I~~~----------~Cv~VfGG~egHrdeVLSvD~~~-~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~p  233 (385)
T KOG1034|consen  165 IQTD----------VCVAVFGGVEGHRDEVLSVDFSL-DGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRP  233 (385)
T ss_pred             ccCC----------eEEEEecccccccCcEEEEEEcC-CCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCc
Confidence            9964          33444   468999999999999 66799999999999999998543210000   0000000000


Q ss_pred             EecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCC-CccccCCCCCCCCccccccccccccCC
Q 004468          198 LDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP-PLTSCQKRMSPPPCVNYFCPMHLSEHG  276 (751)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g  276 (751)
                      +-...-..........|...|-|+.|-   ++++++-+-++.|..|..-... .+...   ..+..+...+....+   .
T Consensus       234 fpt~~~~fp~fst~diHrnyVDCvrw~---gd~ilSkscenaI~~w~pgkl~e~~~~v---kp~es~~Ti~~~~~~---~  304 (385)
T KOG1034|consen  234 FPTPKTHFPDFSTTDIHRNYVDCVRWF---GDFILSKSCENAIVCWKPGKLEESIHNV---KPPESATTILGEFDY---P  304 (385)
T ss_pred             CCccccccccccccccccchHHHHHHH---hhheeecccCceEEEEecchhhhhhhcc---CCCccceeeeeEecc---C
Confidence            000000000011223466677777776   4699999999999999884322 21111   011111111111111   1


Q ss_pred             ccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcce-eeee---cCCCceeEEeCCCCCCcccCC
Q 004468          277 RSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRA-MRYT---VGDASKIMSFTPTLNGLELQP  340 (751)
Q Consensus       277 ~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~-~~~~---~~~~~~~~~~sp~~~~~~~~~  340 (751)
                      ....+....+|+|-++.|+.|...|.|++||+.+..... ....   .+..++..+|+.+..-+.+..
T Consensus       305 ~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vc  372 (385)
T KOG1034|consen  305 MCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVC  372 (385)
T ss_pred             ccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEe
Confidence            112123345667789999999999999999999855421 1222   244566677777665554443

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.70  E-value=8.9e-15  Score=154.77  Aligned_cols=216  Identities=19%  Similarity=0.289  Sum_probs=150.1

Q ss_pred             cccccEEeccCCCcEEEEEECC-CCCEEEEEeCCCcEEEEeCCCCeEEE----EecccC-CcceEEEEEecCCCCcEEEE
Q 004468           39 RLSQERELEGHQGCVNAISWNS-KGSLLISGSDDTHINVWSYSSRKLLH----SIETGH-SANVFCTKFVPETSDELVVS  112 (751)
Q Consensus        39 ~~~~~~~L~gH~~~V~~l~~s~-dg~~LaSgs~Dg~I~IWd~~~~~~~~----~l~~~h-~~~V~~v~fsp~s~~~~l~s  112 (751)
                      +-+-+..|.+|.+.|+.+.|+| +..+||+||.|..|+||.+..+-...    .+..+| .-.|-|+.|+|.. +.++++
T Consensus        68 ~~r~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTa-Dgil~s  146 (1012)
T KOG1445|consen   68 RTRDIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTA-DGILAS  146 (1012)
T ss_pred             cccccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCc-CceEEe
Confidence            3346678899999999999999 56699999999999999987442111    111244 4568899999997 567777


Q ss_pred             EECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCc
Q 004468          113 GAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQE  192 (751)
Q Consensus       113 gs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~  192 (751)
                      ++ -|+|+|||+.+.          +.+..+.+|.+.|.++.|+. ++.+++++..|+.|+|||.|..-.......+|..
T Consensus       147 ~a-~g~v~i~D~stq----------k~~~el~~h~d~vQSa~Wse-DG~llatscKdkqirifDPRa~~~piQ~te~H~~  214 (1012)
T KOG1445|consen  147 GA-HGSVYITDISTQ----------KTAVELSGHTDKVQSADWSE-DGKLLATSCKDKQIRIFDPRASMEPIQTTEGHGG  214 (1012)
T ss_pred             cc-CceEEEEEcccC----------ceeecccCCchhhhcccccc-CCceEeeecCCcceEEeCCccCCCcccccccccc
Confidence            65 589999999975          56888999999999999998 7899999999999999999986433222121111


Q ss_pred             cceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCC----CeEEEEeCCCCC-CccccCCCCCCCCccccc
Q 004468          193 CRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD----AFARLYDRRMLP-PLTSCQKRMSPPPCVNYF  267 (751)
Q Consensus       193 ~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D----~~IriwD~~~~~-~~~~~~~~~~~~~~~~~~  267 (751)
                      .                       .=..+.|-.+ -+.|++.+.+    ..|++||.+... ++.++.           +
T Consensus       215 ~-----------------------rdsRv~w~Gn-~~rlisTGF~~~R~reV~~~Dtr~f~~p~~tle-----------l  259 (1012)
T KOG1445|consen  215 M-----------------------RDSRVLWAGN-WERLISTGFTTKRIREVRAYDTRKFGAPVHTLE-----------L  259 (1012)
T ss_pred             c-----------------------hhheeeeccc-hhhhhhcccchhhheeeeeeeccccCCcceeEE-----------e
Confidence            1                       1112344432 1234444433    578999998653 222111           0


Q ss_pred             cccccccCCccccceEEEEEcCCCCEEEEEe-CCCcEEEEECCCC
Q 004468          268 CPMHLSEHGRSSLHLTHVTFSPNGEEVLLSY-SGEHVYLMDVNHA  311 (751)
Q Consensus       268 ~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s-~d~~I~lwdl~~~  311 (751)
                               .....|.---|.||.+.|+.++ ++.+++.+.+...
T Consensus       260 ---------d~stGvLiPl~DpDt~llfLaGKG~~~l~~lE~~d~  295 (1012)
T KOG1445|consen  260 ---------DSSTGVLIPLYDPDTRLLFLAGKGTNKLFMLEMQDR  295 (1012)
T ss_pred             ---------ecccceEeeeecCCCceEEEecCCcceEEEEEecCC
Confidence                     1111255557899988776555 5889999999874

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.70  E-value=1.3e-15  Score=149.26  Aligned_cols=266  Identities=14%  Similarity=0.177  Sum_probs=182.9

Q ss_pred             cccccccchhhhccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCC
Q 004468           26 VNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPET  105 (751)
Q Consensus        26 ~~~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s  105 (751)
                      .+.++-+|+..  +..+.+.|.+|..+|.+|+||++|+.|+|+|.|..|++||+..|.+++.+  ....+|+.+.|+|..
T Consensus        43 ~nG~vvI~D~~--T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~ri--rf~spv~~~q~hp~k  118 (405)
T KOG1273|consen   43 ANGRVVIYDFD--TFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRI--RFDSPVWGAQWHPRK  118 (405)
T ss_pred             cCCcEEEEEcc--ccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEE--EccCccceeeecccc
Confidence            35667777644  44578899999999999999999999999999999999999999998888  467899999999986


Q ss_pred             CCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCc-eeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCC
Q 004468          106 SDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRR-VKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCP  184 (751)
Q Consensus       106 ~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~-V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~  184 (751)
                       .+..+.+-.+..-.+-++..+...++....       .+..+. -.+..|.+ .|+++++|...|.+.++|..+-+...
T Consensus       119 -~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~-------d~dln~sas~~~fdr-~g~yIitGtsKGkllv~~a~t~e~va  189 (405)
T KOG1273|consen  119 -RNKCVATIMEESPVVIDFSDPKHSVLPKDD-------DGDLNSSASHGVFDR-RGKYIITGTSKGKLLVYDAETLECVA  189 (405)
T ss_pred             -CCeEEEEEecCCcEEEEecCCceeeccCCC-------ccccccccccccccC-CCCEEEEecCcceEEEEecchheeee
Confidence             455555555666666666643222210000       011111 12224666 77899999999999999998865320


Q ss_pred             CCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCcc
Q 004468          185 PAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCV  264 (751)
Q Consensus       185 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~  264 (751)
                                 .+   +      +    .....|+.+.|+. .++.|+.-+.|..||.|+++..-....    ...+...
T Consensus       190 -----------s~---r------i----ts~~~IK~I~~s~-~g~~liiNtsDRvIR~ye~~di~~~~r----~~e~e~~  240 (405)
T KOG1273|consen  190 -----------SF---R------I----TSVQAIKQIIVSR-KGRFLIINTSDRVIRTYEISDIDDEGR----DGEVEPE  240 (405)
T ss_pred             -----------ee---e------e----chheeeeEEEEec-cCcEEEEecCCceEEEEehhhhcccCc----cCCcChh
Confidence                       00   0      0    0124688888888 589999999999999999985432110    0001111


Q ss_pred             ccccccccccCCccccceEEEEEcCCCCEEEEEeC-CCcEEEEECCCCCcceeeeecC-CCceeEEeCCCCCCcccC
Q 004468          265 NYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GEHVYLMDVNHAGGRAMRYTVG-DASKIMSFTPTLNGLELQ  339 (751)
Q Consensus       265 ~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~-d~~I~lwdl~~~~~~~~~~~~~-~~~~~~~~sp~~~~~~~~  339 (751)
                      +.+...  ..    ...-.+++||.+|.|+++++. -..+|||.-..|.......+.. +....+.|+|....++.-
T Consensus       241 ~K~qDv--VN----k~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si  311 (405)
T KOG1273|consen  241 HKLQDV--VN----KLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI  311 (405)
T ss_pred             HHHHHH--Hh----hhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec
Confidence            111111  00    113678999999999998886 5789999999987776666554 666677888876655433

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.70  E-value=6.3e-16  Score=155.75  Aligned_cols=179  Identities=20%  Similarity=0.233  Sum_probs=144.0

Q ss_pred             ccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCC
Q 004468           90 TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED  169 (751)
Q Consensus        90 ~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~D  169 (751)
                      .||+++|..++|+|.. +..|||||.|.+|.||.+-....   ...-.+++..+.+|..+|--++|+|.-.++|+|+|.|
T Consensus        78 ~GHt~~vLDi~w~Pfn-D~vIASgSeD~~v~vW~IPe~~l---~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~D  153 (472)
T KOG0303|consen   78 CGHTAPVLDIDWCPFN-DCVIASGSEDTKVMVWQIPENGL---TRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSD  153 (472)
T ss_pred             cCccccccccccCccC-CceeecCCCCceEEEEECCCccc---ccCcccceEEEeecceeEEEEeecccchhhHhhccCC
Confidence            6999999999999996 78999999999999999975311   1122377899999999999999999888999999999


Q ss_pred             CcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCC
Q 004468          170 GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP  249 (751)
Q Consensus       170 g~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~  249 (751)
                      .+|.+||+.+++..              +.           . .|...|.+++|+. ++.+|++.+.|..|||||.|+++
T Consensus       154 n~v~iWnv~tgeal--------------i~-----------l-~hpd~i~S~sfn~-dGs~l~TtckDKkvRv~dpr~~~  206 (472)
T KOG0303|consen  154 NTVSIWNVGTGEAL--------------IT-----------L-DHPDMVYSMSFNR-DGSLLCTTCKDKKVRVIDPRRGT  206 (472)
T ss_pred             ceEEEEeccCCcee--------------ee-----------c-CCCCeEEEEEecc-CCceeeeecccceeEEEcCCCCc
Confidence            99999999998733              11           1 1778899999999 58999999999999999999987


Q ss_pred             CccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeC---CCcEEEEECCCCCcceeeee
Q 004468          250 PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS---GEHVYLMDVNHAGGRAMRYT  319 (751)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~---d~~I~lwdl~~~~~~~~~~~  319 (751)
                      .+..-                    .+|.+..-..+.|-.+|..+-+|.+   +.++-|||..+...+.....
T Consensus       207 ~v~e~--------------------~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~e  259 (472)
T KOG0303|consen  207 VVSEG--------------------VAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQE  259 (472)
T ss_pred             Eeeec--------------------ccccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEE
Confidence            65431                    2344445667889999995555543   78999999888665544443

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.70  E-value=6e-16  Score=158.74  Aligned_cols=263  Identities=16%  Similarity=0.150  Sum_probs=183.4

Q ss_pred             cccccchhh--hccccccEEeccCCCcEEEEEECCC-CCEEEEEeCCCcEEEEeCCCCeEEEEec-ccCCcceEEEEEec
Q 004468           28 HSLQMHSSL--VRRLSQERELEGHQGCVNAISWNSK-GSLLISGSDDTHINVWSYSSRKLLHSIE-TGHSANVFCTKFVP  103 (751)
Q Consensus        28 ~~l~~~~~~--i~~~~~~~~L~gH~~~V~~l~~s~d-g~~LaSgs~Dg~I~IWd~~~~~~~~~l~-~~h~~~V~~v~fsp  103 (751)
                      .++-+|.--  .....-+..+..|.++|++|.|+|. -..+.+.|.||+|++=|++.......+. ..-...+.++.|+.
T Consensus       210 G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~  289 (498)
T KOG4328|consen  210 GQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSA  289 (498)
T ss_pred             CcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccC
Confidence            344555432  3444556778899999999999994 4689999999999999998664322221 12345566778887


Q ss_pred             CCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCC
Q 004468          104 ETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSC  183 (751)
Q Consensus       104 ~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~  183 (751)
                      +  ...++.+..=|...+||+++..         .....+.-|...|.+|+++|..+.+|+|+|.|++++|||+|.-...
T Consensus       290 e--~~~vl~~~~~G~f~~iD~R~~~---------s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K  358 (498)
T KOG4328|consen  290 E--SRSVLFGDNVGNFNVIDLRTDG---------SEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGK  358 (498)
T ss_pred             C--CccEEEeecccceEEEEeecCC---------ccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCC
Confidence            7  5667777777799999999752         2244556688899999999999999999999999999999985422


Q ss_pred             CCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCC----CCCCccccCCCCC
Q 004468          184 PPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRR----MLPPLTSCQKRMS  259 (751)
Q Consensus       184 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~----~~~~~~~~~~~~~  259 (751)
                      ..         -++.            .-.|...|.+..|+|.++. |++.+.|..|||||..    ...+...+..   
T Consensus       359 ~s---------p~ls------------t~~HrrsV~sAyFSPs~gt-l~TT~~D~~IRv~dss~~sa~~~p~~~I~H---  413 (498)
T KOG4328|consen  359 AS---------PFLS------------TLPHRRSVNSAYFSPSGGT-LLTTCQDNEIRVFDSSCISAKDEPLGTIPH---  413 (498)
T ss_pred             CC---------ccee------------cccccceeeeeEEcCCCCc-eEeeccCCceEEeecccccccCCccceeec---
Confidence            10         0111            1237788999999998776 9999999999999984    3333222211   


Q ss_pred             CCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcceeeeec--CCCceeEEeCCCCCCcc
Q 004468          260 PPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTV--GDASKIMSFTPTLNGLE  337 (751)
Q Consensus       260 ~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~~~~~--~~~~~~~~~sp~~~~~~  337 (751)
                                  -...+..- ..-...|.|+..++++|-.-..|-|||-+.++........  .....+..|+|..+++.
T Consensus       414 ------------n~~t~Rwl-T~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~  480 (498)
T KOG4328|consen  414 ------------NNRTGRWL-TPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLA  480 (498)
T ss_pred             ------------cCcccccc-cchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeeccccccee
Confidence                        11111111 1344689999999999999999999998885422222221  23445567888877655


Q ss_pred             cC
Q 004468          338 LQ  339 (751)
Q Consensus       338 ~~  339 (751)
                      ..
T Consensus       481 aG  482 (498)
T KOG4328|consen  481 AG  482 (498)
T ss_pred             cc
Confidence            44

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.69  E-value=4.8e-15  Score=156.36  Aligned_cols=252  Identities=13%  Similarity=0.157  Sum_probs=167.9

Q ss_pred             ccccccchhhhccccccEEeccCCCcEEEEEECCCCCEE-EEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCC
Q 004468           27 NHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLL-ISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPET  105 (751)
Q Consensus        27 ~~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~~L-aSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s  105 (751)
                      +..+.+|+.  .+.++.+.+.+|.. +.++.|+|+|+.| ++++.|+.|++||..+++.+..+ ..+. .+..+.|+|+ 
T Consensus        10 d~~v~~~d~--~t~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~-~~~~-~~~~~~~~~~-   83 (300)
T TIGR03866        10 DNTISVIDT--ATLEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTL-PSGP-DPELFALHPN-   83 (300)
T ss_pred             CCEEEEEEC--CCCceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEec-cCCC-CccEEEECCC-
Confidence            455666653  34556777876654 6789999999976 67788999999999998887776 3343 3567899999 


Q ss_pred             CCcEE-EEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCC-cEEEEecCCCCCC
Q 004468          106 SDELV-VSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG-TLRQHDFRQGSSC  183 (751)
Q Consensus       106 ~~~~l-~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg-~I~iwDlr~~~~~  183 (751)
                       ++.+ ++++.|+.|++||+...          +.+..+. +...+.+++|+| ++.++++++.++ .+..||.++++..
T Consensus        84 -g~~l~~~~~~~~~l~~~d~~~~----------~~~~~~~-~~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~d~~~~~~~  150 (300)
T TIGR03866        84 -GKILYIANEDDNLVTVIDIETR----------KVLAEIP-VGVEPEGMAVSP-DGKIVVNTSETTNMAHFIDTKTYEIV  150 (300)
T ss_pred             -CCEEEEEcCCCCeEEEEECCCC----------eEEeEee-CCCCcceEEECC-CCCEEEEEecCCCeEEEEeCCCCeEE
Confidence             5655 45567899999999863          2244443 233467899999 667888887765 4667898765421


Q ss_pred             CCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEE-EEEeCCCeEEEEeCCCCCCccccCCCCCCCC
Q 004468          184 PPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLL-LVGGSDAFARLYDRRMLPPLTSCQKRMSPPP  262 (751)
Q Consensus       184 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l-~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~  262 (751)
                                    ....            ......+++|+|+ +.++ +++..++.|++||+.+.+.+..+....    
T Consensus       151 --------------~~~~------------~~~~~~~~~~s~d-g~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~----  199 (300)
T TIGR03866       151 --------------DNVL------------VDQRPRFAEFTAD-GKELWVSSEIGGTVSVIDVATRKVIKKITFEI----  199 (300)
T ss_pred             --------------EEEE------------cCCCccEEEECCC-CCEEEEEcCCCCEEEEEEcCcceeeeeeeecc----
Confidence                          0000            0123457899996 5655 455579999999999875433221000    


Q ss_pred             ccccccccccccCCccccceEEEEEcCCCCEEEEE-eCCCcEEEEECCCCCcceeeeecCCCceeEEeCCCCCCcccC
Q 004468          263 CVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLS-YSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQ  339 (751)
Q Consensus       263 ~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~-s~d~~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~  339 (751)
                            +. ..   ........++|+|+|++++++ +.++.|.+||+.+++.. .....++.+..++|+|+...+...
T Consensus       200 ------~~-~~---~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~-~~~~~~~~~~~~~~~~~g~~l~~~  266 (300)
T TIGR03866       200 ------PG-VH---PEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVL-DYLLVGQRVWQLAFTPDEKYLLTT  266 (300)
T ss_pred             ------cc-cc---cccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEE-EEEEeCCCcceEEECCCCCEEEEE
Confidence                  00 00   001124578999999987665 45778999999875433 233445677889999988766543

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.67  E-value=4.6e-15  Score=165.35  Aligned_cols=216  Identities=16%  Similarity=0.285  Sum_probs=149.6

Q ss_pred             cCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccc--CCcceEEEEEecCCCCcEEEEEECCCcEEEEECC
Q 004468           48 GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETG--HSANVFCTKFVPETSDELVVSGAGDAEVRLFNLS  125 (751)
Q Consensus        48 gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~--h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~  125 (751)
                      +..+.-..+.|+|-...++++.+.-.|+|||.+.++.+..|..+  ....|+.+.+..+.+..++++|+.||.||||+-.
T Consensus      1062 ~n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y 1141 (1387)
T KOG1517|consen 1062 GNNQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDY 1141 (1387)
T ss_pred             cCCCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccc
Confidence            33445667888998889999987789999999999988877433  2467999999887667899999999999999865


Q ss_pred             CCCCCCCCCCCCCCceeec-------ccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEE
Q 004468          126 RFSGRGLDDNAITPSALYQ-------CHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILL  198 (751)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~-------~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~  198 (751)
                      ......     .+.+..+.       +-.+.=.-+.|....|++++ +|+-..|||||......+              .
T Consensus      1142 ~~~~~~-----~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~-tGd~r~IRIWDa~~E~~~--------------~ 1201 (1387)
T KOG1517|consen 1142 ADKWKK-----PELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLV-TGDVRSIRIWDAHKEQVV--------------A 1201 (1387)
T ss_pred             ccccCC-----ceeEEeeccccccCccCCCCCeeeehhhhCCeEEe-cCCeeEEEEEecccceeE--------------e
Confidence            421111     02222211       11122234578776766664 455789999999876533              1


Q ss_pred             ecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCcc
Q 004468          199 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRS  278 (751)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  278 (751)
                      +.-.          +....|+++.-+-..++.|++|..||.||+||.|+..+-.          .+..+       +.|.
T Consensus      1202 diP~----------~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds----------~v~~~-------R~h~ 1254 (1387)
T KOG1517|consen 1202 DIPY----------GSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDS----------LVCVY-------REHN 1254 (1387)
T ss_pred             eccc----------CCCccceeecccccCCceEEEeecCCceEEeecccCCccc----------cceee-------cccC
Confidence            1111          1344577776666668999999999999999999754311          01111       1122


Q ss_pred             c-cceEEEEEcCCCC-EEEEEeCCCcEEEEECCC
Q 004468          279 S-LHLTHVTFSPNGE-EVLLSYSGEHVYLMDVNH  310 (751)
Q Consensus       279 ~-~~vt~v~fspdg~-~Ll~~s~d~~I~lwdl~~  310 (751)
                      . .+|..+.+.+.|- .|++|+.+|.|++||++.
T Consensus      1255 ~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~ 1288 (1387)
T KOG1517|consen 1255 DVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRM 1288 (1387)
T ss_pred             CcccceeEEeecCCCcceeeeccCCeEEEEeccc
Confidence            1 1388999999775 499999999999999988

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.67  E-value=1.7e-15  Score=156.38  Aligned_cols=212  Identities=18%  Similarity=0.229  Sum_probs=168.0

Q ss_pred             cccccccccchhhhccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEec
Q 004468           24 PDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP  103 (751)
Q Consensus        24 ~~~~~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp  103 (751)
                      ....+.+++|+-.  +-.+.+.|++|+..|+++.++....+||+++..|.|+|..+.++.....|..+....|.-++|+|
T Consensus        97 gG~~~~Vkiwdl~--~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~  174 (673)
T KOG4378|consen   97 GGQSGCVKIWDLR--AKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSP  174 (673)
T ss_pred             cCcCceeeehhhH--HHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeeccc
Confidence            3456778888755  44467889999999999999999999999999999999999998887777444456677999999


Q ss_pred             CCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCC
Q 004468          104 ETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSC  183 (751)
Q Consensus       104 ~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~  183 (751)
                      .. -.+|.+++.+|.|.+||+....         ........|..+...|+|+|.+..+|++.|.|+.|.+||++.....
T Consensus       175 sk-r~lL~~asd~G~VtlwDv~g~s---------p~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~  244 (673)
T KOG4378|consen  175 SK-RFLLSIASDKGAVTLWDVQGMS---------PIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQAST  244 (673)
T ss_pred             cc-ceeeEeeccCCeEEEEeccCCC---------cccchhhhccCCcCcceecCCccceEEEecccceEEEeeccccccc
Confidence            85 5677899999999999998532         2244567899999999999999999999999999999999975532


Q ss_pred             CCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCC-CccccCCCCCCCC
Q 004468          184 PPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP-PLTSCQKRMSPPP  262 (751)
Q Consensus       184 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~-~~~~~~~~~~~~~  262 (751)
                      ..          +.                ...+...++|.+ ++.+|+.|...|.|..||+|+.+ |+...        
T Consensus       245 ~~----------l~----------------y~~Plstvaf~~-~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~--------  289 (673)
T KOG4378|consen  245 DR----------LT----------------YSHPLSTVAFSE-CGTYLCAGNSKGELIAYDMRSTKAPVAVR--------  289 (673)
T ss_pred             ce----------ee----------------ecCCcceeeecC-CceEEEeecCCceEEEEecccCCCCceEe--------
Confidence            10          11                235788999999 58999999999999999999764 22111        


Q ss_pred             ccccccccccccCCccccceEEEEEcCCCCEEEE
Q 004468          263 CVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLL  296 (751)
Q Consensus       263 ~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~  296 (751)
                                  ..|.. .|++|+|-|.- .+++
T Consensus       290 ------------sah~~-sVt~vafq~s~-tvlt  309 (673)
T KOG4378|consen  290 ------------SAHDA-SVTRVAFQPSP-TVLT  309 (673)
T ss_pred             ------------eeccc-ceeEEEeeecc-eeee
Confidence                        23444 49999998876 3443

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.67  E-value=1.3e-15  Score=147.62  Aligned_cols=215  Identities=20%  Similarity=0.261  Sum_probs=154.7

Q ss_pred             cEEeccCCCcEEEEEECC-CCCEEEEEeCC-------CcEEEEeCCCC---------eEEEEecccCCcceEEEEEecCC
Q 004468           43 ERELEGHQGCVNAISWNS-KGSLLISGSDD-------THINVWSYSSR---------KLLHSIETGHSANVFCTKFVPET  105 (751)
Q Consensus        43 ~~~L~gH~~~V~~l~~s~-dg~~LaSgs~D-------g~I~IWd~~~~---------~~~~~l~~~h~~~V~~v~fsp~s  105 (751)
                      .+.|..|-|+|+.|+-+| +.++|+|+-.|       ..+-||.+...         +++..+.+.+-+.|.||.|.|+ 
T Consensus        56 skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pn-  134 (370)
T KOG1007|consen   56 SKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPN-  134 (370)
T ss_pred             hhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCC-
Confidence            356778999999999999 45677776442       24779987532         3444555567789999999998 


Q ss_pred             CCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEec-CCCCEEEEEeCCCcEEEEecCCCCCCC
Q 004468          106 SDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEV-GNPHVVWSASEDGTLRQHDFRQGSSCP  184 (751)
Q Consensus       106 ~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-~~~~~l~s~s~Dg~I~iwDlr~~~~~~  184 (751)
                       +..+++-. |..|.+|++..+.....    .-+...-..|....++-+|+| .+++.+++ ..|+++..||+|+.+.. 
T Consensus       135 -s~klasm~-dn~i~l~~l~ess~~va----ev~ss~s~e~~~~ftsg~WspHHdgnqv~t-t~d~tl~~~D~RT~~~~-  206 (370)
T KOG1007|consen  135 -SDKLASMD-DNNIVLWSLDESSKIVA----EVLSSESAEMRHSFTSGAWSPHHDGNQVAT-TSDSTLQFWDLRTMKKN-  206 (370)
T ss_pred             -CCeeEEec-cCceEEEEcccCcchhe----eecccccccccceecccccCCCCccceEEE-eCCCcEEEEEccchhhh-
Confidence             56777654 89999999987543210    011112233677788999999 56677754 56799999999987532 


Q ss_pred             CCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCC-CccccCCCCCCCCc
Q 004468          185 PAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP-PLTSCQKRMSPPPC  263 (751)
Q Consensus       185 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~-~~~~~~~~~~~~~~  263 (751)
                                             ......|...|..++|+|+...+|++|+.||.|||||.|+.+ ++.++         
T Consensus       207 -----------------------~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el---------  254 (370)
T KOG1007|consen  207 -----------------------NSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQEL---------  254 (370)
T ss_pred             -----------------------cchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCcccccc---------
Confidence                                   111122556799999999988999999999999999999764 22111         


Q ss_pred             cccccccccccCCccccceEEEEEcCCC-CEEEEEeCCCcEEEEECCC
Q 004468          264 VNYFCPMHLSEHGRSSLHLTHVTFSPNG-EEVLLSYSGEHVYLMDVNH  310 (751)
Q Consensus       264 ~~~~~~~~~~~~g~~~~~vt~v~fspdg-~~Ll~~s~d~~I~lwdl~~  310 (751)
                                 .+|.. +|.+|.|+|.- +.|+++++|..|.||-...
T Consensus       255 -----------~~HsH-WvW~VRfn~~hdqLiLs~~SDs~V~Lsca~s  290 (370)
T KOG1007|consen  255 -----------PGHSH-WVWAVRFNPEHDQLILSGGSDSAVNLSCASS  290 (370)
T ss_pred             -----------CCCce-EEEEEEecCccceEEEecCCCceeEEEeccc
Confidence                       23443 79999999965 4677888899999997655

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.65  E-value=5.1e-15  Score=150.01  Aligned_cols=142  Identities=20%  Similarity=0.339  Sum_probs=114.9

Q ss_pred             ccccccccchhhh-------ccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCC--------C-----C--
Q 004468           25 DVNHSLQMHSSLV-------RRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYS--------S-----R--   82 (751)
Q Consensus        25 ~~~~~l~~~~~~i-------~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~--------~-----~--   82 (751)
                      ..+..+++|.-..       .+++....|..|...||++.|+|+|.+||||+++|.|.+|-..        +     .  
T Consensus        33 G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~  112 (434)
T KOG1009|consen   33 GGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEK  112 (434)
T ss_pred             cCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccc
Confidence            3455566664321       3556677899999999999999999999999999999999765        2     1  


Q ss_pred             eEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCE
Q 004468           83 KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHV  162 (751)
Q Consensus        83 ~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~  162 (751)
                      -.+.....+|...|..++|+|+  +.++++++.|.++++||+..+          .....+..|...|..++|.| -..+
T Consensus       113 w~v~k~lr~h~~diydL~Ws~d--~~~l~s~s~dns~~l~Dv~~G----------~l~~~~~dh~~yvqgvawDp-l~qy  179 (434)
T KOG1009|consen  113 WVVKKVLRGHRDDIYDLAWSPD--SNFLVSGSVDNSVRLWDVHAG----------QLLAILDDHEHYVQGVAWDP-LNQY  179 (434)
T ss_pred             eEEEEEecccccchhhhhccCC--CceeeeeeccceEEEEEeccc----------eeEeeccccccccceeecch-hhhh
Confidence            1233334789999999999999  799999999999999999975          55788899999999999999 5578


Q ss_pred             EEEEeCCCcEEEEecCC
Q 004468          163 VWSASEDGTLRQHDFRQ  179 (751)
Q Consensus       163 l~s~s~Dg~I~iwDlr~  179 (751)
                      +++-+.|...+.+.+..
T Consensus       180 v~s~s~dr~~~~~~~~~  196 (434)
T KOG1009|consen  180 VASKSSDRHPEGFSAKL  196 (434)
T ss_pred             hhhhccCcccceeeeee
Confidence            88888888666665544

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.64  E-value=1.4e-13  Score=152.39  Aligned_cols=237  Identities=19%  Similarity=0.257  Sum_probs=180.3

Q ss_pred             cccccchhhhccccccEEeccCCCcEEEEEECCCC---CEEEEEeCCCcEEEEeCCCCeEEEEec---------------
Q 004468           28 HSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKG---SLLISGSDDTHINVWSYSSRKLLHSIE---------------   89 (751)
Q Consensus        28 ~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg---~~LaSgs~Dg~I~IWd~~~~~~~~~l~---------------   89 (751)
                      ..+++++  ..+..+++.|++|...+..+.+.|..   .++.+++.||.|++||...+.++.++.               
T Consensus        37 ~~V~VyS--~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a  114 (792)
T KOG1963|consen   37 NFVKVYS--TATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQA  114 (792)
T ss_pred             CEEEEEe--cchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCceeEEEechhHh
Confidence            4445544  45667888999999999999998854   477899999999999987765544331               


Q ss_pred             --------------------------------------------------------------------------------
Q 004468           90 --------------------------------------------------------------------------------   89 (751)
Q Consensus        90 --------------------------------------------------------------------------------   89 (751)
                                                                                                      
T Consensus       115 ~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~~~  194 (792)
T KOG1963|consen  115 DISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVHMCKIHIYFVPKHTKH  194 (792)
T ss_pred             CccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEEEeeeEEEEEeccccee
Confidence                                                                                            


Q ss_pred             -------ccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCE
Q 004468           90 -------TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHV  162 (751)
Q Consensus        90 -------~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~  162 (751)
                             ..|.-+++|++++|+  ++++++|..||.|.+|.--..+..      ......+.-|...|.+++|++ +|.+
T Consensus       195 ~~~~~~~~~Htf~~t~~~~spn--~~~~Aa~d~dGrI~vw~d~~~~~~------~~t~t~lHWH~~~V~~L~fS~-~G~~  265 (792)
T KOG1963|consen  195 TSSRDITVHHTFNITCVALSPN--ERYLAAGDSDGRILVWRDFGSSDD------SETCTLLHWHHDEVNSLSFSS-DGAY  265 (792)
T ss_pred             eccchhhhhhcccceeEEeccc--cceEEEeccCCcEEEEeccccccc------cccceEEEecccccceeEEec-CCce
Confidence                   236667889999999  899999999999999975431111      133567788999999999999 6678


Q ss_pred             EEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEE
Q 004468          163 VWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARL  242 (751)
Q Consensus       163 l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~Iri  242 (751)
                      |.|||..|.+.+|.+.+++.                          ...|.-...|..+.++| ++.+.++...|+.|.+
T Consensus       266 LlSGG~E~VLv~Wq~~T~~k--------------------------qfLPRLgs~I~~i~vS~-ds~~~sl~~~DNqI~l  318 (792)
T KOG1963|consen  266 LLSGGREGVLVLWQLETGKK--------------------------QFLPRLGSPILHIVVSP-DSDLYSLVLEDNQIHL  318 (792)
T ss_pred             EeecccceEEEEEeecCCCc--------------------------ccccccCCeeEEEEEcC-CCCeEEEEecCceEEE
Confidence            88999999999999998862                          23344567899999999 5788899999999999


Q ss_pred             EeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCC
Q 004468          243 YDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG  312 (751)
Q Consensus       243 wD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~  312 (751)
                      ..+.++.....+++...+.+..         ..+..+ -.+.++++|.-+.++-++..++|.+||+.+..
T Consensus       319 i~~~dl~~k~tIsgi~~~~~~~---------k~~~~~-l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~  378 (792)
T KOG1963|consen  319 IKASDLEIKSTISGIKPPTPST---------KTRPQS-LTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDS  378 (792)
T ss_pred             EeccchhhhhhccCccCCCccc---------cccccc-cceeEEEcCCCCceeecCCCceEEEEeccccc
Confidence            9987776555544332221110         011122 37889999988889999999999999999854

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.63  E-value=1.2e-14  Score=144.44  Aligned_cols=199  Identities=13%  Similarity=0.224  Sum_probs=151.9

Q ss_pred             CEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCcee
Q 004468           63 SLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSAL  142 (751)
Q Consensus        63 ~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~  142 (751)
                      +.+|++-..|.|+|||..+++.+..+ ++|...++.++|.....+..+.+|+.||+|++||++....        .+...
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~f-k~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e--------~a~~~  111 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEF-KGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAE--------SARIS  111 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhhee-cCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchh--------hhhee
Confidence            57888889999999999999999999 8999999999999864478999999999999999997543        23445


Q ss_pred             ecccC-CceeEEEEecCCCCEEEEEeC----CCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccc
Q 004468          143 YQCHT-RRVKKLAVEVGNPHVVWSASE----DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLS  217 (751)
Q Consensus       143 ~~~h~-~~V~~l~~sp~~~~~l~s~s~----Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  217 (751)
                      +..|. .+-.+++..- ..+++++|.+    |-.|.+||+|..+...                       -.....|...
T Consensus       112 ~~~~~~~~f~~ld~nc-k~~ii~~GtE~~~s~A~v~lwDvR~~qq~l-----------------------~~~~eSH~DD  167 (376)
T KOG1188|consen  112 WTQQSGTPFICLDLNC-KKNIIACGTELTRSDASVVLWDVRSEQQLL-----------------------RQLNESHNDD  167 (376)
T ss_pred             ccCCCCCcceEeeccC-cCCeEEeccccccCceEEEEEEeccccchh-----------------------hhhhhhccCc
Confidence            55555 4455666554 5577777754    6689999999876420                       1112347889


Q ss_pred             eEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCC-CEEEE
Q 004468          218 LKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNG-EEVLL  296 (751)
Q Consensus       218 v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg-~~Ll~  296 (751)
                      |+++.|+|.++++|++|+.||.|.|||+.....-..         .+..+         .....|..+.|..++ +.|.+
T Consensus       168 VT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDa---------L~~vi---------N~~sSI~~igw~~~~ykrI~c  229 (376)
T KOG1188|consen  168 VTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDA---------LLHVI---------NHGSSIHLIGWLSKKYKRIMC  229 (376)
T ss_pred             ceeEEecCCCCCeEEeecccceEEeeecCCCcchhh---------HHHhh---------cccceeeeeeeecCCcceEEE
Confidence            999999999999999999999999999975421100         01111         112248999999988 45888


Q ss_pred             EeCCCcEEEEECCCCC
Q 004468          297 SYSGEHVYLMDVNHAG  312 (751)
Q Consensus       297 ~s~d~~I~lwdl~~~~  312 (751)
                      -+..+..++|+++.+.
T Consensus       230 lTH~Etf~~~ele~~~  245 (376)
T KOG1188|consen  230 LTHMETFAIYELEDGS  245 (376)
T ss_pred             EEccCceeEEEccCCC
Confidence            8899999999999964

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.63  E-value=8.6e-14  Score=157.82  Aligned_cols=227  Identities=18%  Similarity=0.176  Sum_probs=157.4

Q ss_pred             hhccccccEEeccCCCcEEEEEECCC-CCEEEEEeCCCcEEEEeCCCC-------eEEEEecccCCcceEEEEEecCCCC
Q 004468           36 LVRRLSQERELEGHQGCVNAISWNSK-GSLLISGSDDTHINVWSYSSR-------KLLHSIETGHSANVFCTKFVPETSD  107 (751)
Q Consensus        36 ~i~~~~~~~~L~gH~~~V~~l~~s~d-g~~LaSgs~Dg~I~IWd~~~~-------~~~~~l~~~h~~~V~~v~fsp~s~~  107 (751)
                      +--+..++..|..|...|+.++.++. +.+++|||.||+|+|||...-       +...++ ......+.++.+++.  +
T Consensus      1034 W~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~lty-s~~~sr~~~vt~~~~--~ 1110 (1431)
T KOG1240|consen 1034 WNPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTY-SPEGSRVEKVTMCGN--G 1110 (1431)
T ss_pred             CCccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEE-eccCCceEEEEeccC--C
Confidence            45677889999999999999999875 499999999999999997521       222333 234678999999998  7


Q ss_pred             cEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeeccc-CCce-eEEEEecCCCC-EEEEEeCCCcEEEEecCCCCCCC
Q 004468          108 ELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCH-TRRV-KKLAVEVGNPH-VVWSASEDGTLRQHDFRQGSSCP  184 (751)
Q Consensus       108 ~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h-~~~V-~~l~~sp~~~~-~l~s~s~Dg~I~iwDlr~~~~~~  184 (751)
                      +.+|.++.||.|++.++.........   .......+.+ .+.| ..-+|...... .++.+..-+.|..||+|..... 
T Consensus      1111 ~~~Av~t~DG~v~~~~id~~~~~~~~---~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~- 1186 (1431)
T KOG1240|consen 1111 DQFAVSTKDGSVRVLRIDHYNVSKRV---ATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDA- 1186 (1431)
T ss_pred             CeEEEEcCCCeEEEEEccccccccce---eeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhH-
Confidence            89999999999999999863221110   0111111222 2223 33345443334 7888888999999999986532 


Q ss_pred             CCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCcc
Q 004468          185 PAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCV  264 (751)
Q Consensus       185 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~  264 (751)
                                   |.+         ..+...+.|++++++| .+.++++|...|.+-+||+|-..++.+...+       
T Consensus      1187 -------------w~l---------k~~~~hG~vTSi~idp-~~~WlviGts~G~l~lWDLRF~~~i~sw~~P------- 1236 (1431)
T KOG1240|consen 1187 -------------WRL---------KNQLRHGLVTSIVIDP-WCNWLVIGTSRGQLVLWDLRFRVPILSWEHP------- 1236 (1431)
T ss_pred             -------------Hhh---------hcCccccceeEEEecC-CceEEEEecCCceEEEEEeecCceeecccCc-------
Confidence                         111         1122456899999999 4789999999999999999987766554221       


Q ss_pred             ccccccccccCCccccceEEEEEcCC---CCEEEE-Ee-CCCcEEEEECCCCC
Q 004468          265 NYFCPMHLSEHGRSSLHLTHVTFSPN---GEEVLL-SY-SGEHVYLMDVNHAG  312 (751)
Q Consensus       265 ~~~~~~~~~~~g~~~~~vt~v~fspd---g~~Ll~-~s-~d~~I~lwdl~~~~  312 (751)
                                  +. .+++.+..+|-   ....++ ++ +.+.|.+|++.++.
T Consensus      1237 ------------~~-~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~ 1276 (1431)
T KOG1240|consen 1237 ------------AR-APIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGL 1276 (1431)
T ss_pred             ------------cc-CCcceEEeeccCCCCceEEEecccCCCceeeeecccCc
Confidence                        11 24666666653   334444 44 57899999999964

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.62  E-value=6.1e-15  Score=156.77  Aligned_cols=241  Identities=17%  Similarity=0.234  Sum_probs=154.8

Q ss_pred             cEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCC
Q 004468           52 CVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRG  131 (751)
Q Consensus        52 ~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~  131 (751)
                      +|+.++|-|||..|+.+..| .+.|||+..|..+.++ ++|++.|+||+|+.+  |+.++||+.|..|.||..... |  
T Consensus        14 ci~d~afkPDGsqL~lAAg~-rlliyD~ndG~llqtL-KgHKDtVycVAys~d--GkrFASG~aDK~VI~W~~klE-G--   86 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAAGS-RLLVYDTSDGTLLQPL-KGHKDTVYCVAYAKD--GKRFASGSADKSVIIWTSKLE-G--   86 (1081)
T ss_pred             chheeEECCCCceEEEecCC-EEEEEeCCCccccccc-ccccceEEEEEEccC--CceeccCCCceeEEEeccccc-c--
Confidence            99999999999988887654 7999999999999999 899999999999999  899999999999999998742 1  


Q ss_pred             CCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCC-----------------CCCCccc
Q 004468          132 LDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAG-----------------SSHQECR  194 (751)
Q Consensus       132 ~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~-----------------~~~~~~~  194 (751)
                              +.. ..|++.|.|+.|+| -.+.|+||+-. ..-+|............                 .+..+..
T Consensus        87 --------~Lk-YSH~D~IQCMsFNP-~~h~LasCsLs-dFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGT  155 (1081)
T KOG1538|consen   87 --------ILK-YSHNDAIQCMSFNP-ITHQLASCSLS-DFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGT  155 (1081)
T ss_pred             --------eee-eccCCeeeEeecCc-hHHHhhhcchh-hccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCce
Confidence                    111 13555555555555 33444444432 22233332211100000                 0000001


Q ss_pred             eEEEecccCceecccCCCCCccceEEEEEeCCCC----cEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCcccccccc
Q 004468          195 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRP----HLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPM  270 (751)
Q Consensus       195 ~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~----~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (751)
                      ..+-+........+..+.+...+|.+++|+|..+    ..+++.....++.+|.+.-. .+.+-..-.-.|-|+.+|..+
T Consensus       156 IsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~-~Igk~r~L~FdP~CisYf~NG  234 (1081)
T KOG1538|consen  156 ISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGK-QIGKDRALNFDPCCISYFTNG  234 (1081)
T ss_pred             EEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecce-eecccccCCCCchhheeccCC
Confidence            1111111122233445555678999999999643    47888888889988887532 222111112234566666433


Q ss_pred             cc--------------------ccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 004468          271 HL--------------------SEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (751)
Q Consensus       271 ~~--------------------~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~  311 (751)
                      ..                    ...|....+|+.|+..|++++++.|+.||+|-.|++-..
T Consensus       235 Ey~LiGGsdk~L~~fTR~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~fS  295 (1081)
T KOG1538|consen  235 EYILLGGSDKQLSLFTRDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIFS  295 (1081)
T ss_pred             cEEEEccCCCceEEEeecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhHHh
Confidence            21                    112334457899999999999999999999999987763

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.62  E-value=1e-12  Score=143.75  Aligned_cols=209  Identities=27%  Similarity=0.426  Sum_probs=157.0

Q ss_pred             EeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCe-EEEEeccc-CCcceEEEEE-ecCCCCc-EEEEEEC-CCcE
Q 004468           45 ELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK-LLHSIETG-HSANVFCTKF-VPETSDE-LVVSGAG-DAEV  119 (751)
Q Consensus        45 ~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~-~~~~l~~~-h~~~V~~v~f-sp~s~~~-~l~sgs~-Dg~V  119 (751)
                      .+.+|...|.++.|.+.+..++.++.|+.+.+|+...+. .+..+ .+ +...+..+.+ .++  +. +++..+. |+.+
T Consensus        60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~d~~~  136 (466)
T COG2319          60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSL-EGLHDSSVSKLALSSPD--GNSILLASSSLDGTV  136 (466)
T ss_pred             eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEE-eccCCCceeeEEEECCC--cceEEeccCCCCccE
Confidence            567899999999999999999999999999999998876 66666 44 3347888888 666  45 5555444 9999


Q ss_pred             EEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeC-CCcEEEEecCCCCCCCCCCCCCCccceEEE
Q 004468          120 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASE-DGTLRQHDFRQGSSCPPAGSSHQECRNILL  198 (751)
Q Consensus       120 ~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~-Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~  198 (751)
                      ++|++...         ......+..|...|..++|+| ++..+++++. |+.+++|++......               
T Consensus       137 ~~~~~~~~---------~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~---------------  191 (466)
T COG2319         137 KLWDLSTP---------GKLIRTLEGHSESVTSLAFSP-DGKLLASGSSLDGTIKLWDLRTGKPL---------------  191 (466)
T ss_pred             EEEEecCC---------CeEEEEEecCcccEEEEEECC-CCCEEEecCCCCCceEEEEcCCCceE---------------
Confidence            99999851         144778889999999999999 5557778875 999999999874321               


Q ss_pred             ecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCcc
Q 004468          199 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRS  278 (751)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  278 (751)
                                .....|...|.+++|+|++..++++++.|+.|++||.........            .       ..+|.
T Consensus       192 ----------~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~------------~-------~~~~~  242 (466)
T COG2319         192 ----------STLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRS------------T-------LSGHS  242 (466)
T ss_pred             ----------EeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEee------------e-------cCCCC
Confidence                      111226778999999985432555569999999998774332210            0       12333


Q ss_pred             ccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCC
Q 004468          279 SLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG  312 (751)
Q Consensus       279 ~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~  312 (751)
                      .. + ...|+|++..+++++.|+.+++|++....
T Consensus       243 ~~-~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  274 (466)
T COG2319         243 DS-V-VSSFSPDGSLLASGSSDGTIRLWDLRSSS  274 (466)
T ss_pred             cc-e-eEeECCCCCEEEEecCCCcEEEeeecCCC
Confidence            31 2 22899999888999999999999999854

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.62  E-value=1.8e-12  Score=141.74  Aligned_cols=226  Identities=27%  Similarity=0.419  Sum_probs=165.2

Q ss_pred             ccccccchhhhccccccEEeccCCC-cEEEEEE-CCCCC-EEEEEeC-CCcEEEEeCCC-CeEEEEecccCCcceEEEEE
Q 004468           27 NHSLQMHSSLVRRLSQERELEGHQG-CVNAISW-NSKGS-LLISGSD-DTHINVWSYSS-RKLLHSIETGHSANVFCTKF  101 (751)
Q Consensus        27 ~~~l~~~~~~i~~~~~~~~L~gH~~-~V~~l~~-s~dg~-~LaSgs~-Dg~I~IWd~~~-~~~~~~l~~~h~~~V~~v~f  101 (751)
                      +..+.+|...... .....+.++.. .+..+.+ ++++. +++..+. |+.+.+|+... ......+ ..|...|.+++|
T Consensus        86 d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~  163 (466)
T COG2319          86 DGTIKLWDLDNGE-KLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTL-EGHSESVTSLAF  163 (466)
T ss_pred             CCcEEEEEcCCCc-eeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEEE-ecCcccEEEEEE
Confidence            4445555443332 35566666444 7888888 88887 5555455 99999999987 6677777 799999999999


Q ss_pred             ecCCCCcEEEEEEC-CCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCC
Q 004468          102 VPETSDELVVSGAG-DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQG  180 (751)
Q Consensus       102 sp~s~~~~l~sgs~-Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~  180 (751)
                      +|+  +..+++++. |+.+++|++...          ..+..+.+|...|.+++|+|++..++++++.|++|++||...+
T Consensus       164 ~~~--~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~  231 (466)
T COG2319         164 SPD--GKLLASGSSLDGTIKLWDLRTG----------KPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTG  231 (466)
T ss_pred             CCC--CCEEEecCCCCCceEEEEcCCC----------ceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCC
Confidence            999  678888885 999999999862          4577888899999999999844436666699999999988744


Q ss_pred             CCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCC
Q 004468          181 SSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSP  260 (751)
Q Consensus       181 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~  260 (751)
                      .....                        ....+...+ -..|+|+ +.++++++.|+.+++||.+....          
T Consensus       232 ~~~~~------------------------~~~~~~~~~-~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~----------  275 (466)
T COG2319         232 KLLRS------------------------TLSGHSDSV-VSSFSPD-GSLLASGSSDGTIRLWDLRSSSS----------  275 (466)
T ss_pred             cEEee------------------------ecCCCCcce-eEeECCC-CCEEEEecCCCcEEEeeecCCCc----------
Confidence            32100                        111123332 2278996 47888999999999999986542          


Q ss_pred             CCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCC
Q 004468          261 PPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG  312 (751)
Q Consensus       261 ~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~  312 (751)
                        ....+       .+| ...+.++.|+|++..+++++.|+.+.+||+.+..
T Consensus       276 --~~~~~-------~~~-~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  317 (466)
T COG2319         276 --LLRTL-------SGH-SSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGK  317 (466)
T ss_pred             --EEEEE-------ecC-CccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCc
Confidence              01111       123 2369999999999999998889889999888754

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.62  E-value=7.2e-15  Score=148.98  Aligned_cols=229  Identities=17%  Similarity=0.261  Sum_probs=158.5

Q ss_pred             CCcEEEEEECCCCC-EEEEEeCCCcEEEEeCCCCe---------EEEEecccCCcceEEEEEecCCCCcEEEEEECCCcE
Q 004468           50 QGCVNAISWNSKGS-LLISGSDDTHINVWSYSSRK---------LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEV  119 (751)
Q Consensus        50 ~~~V~~l~~s~dg~-~LaSgs~Dg~I~IWd~~~~~---------~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V  119 (751)
                      ..+|..+.|.+++. .||||+.|..|+||-+..+.         .+..+ ..|...|++|.|+|+  |.+|+||+.+|.|
T Consensus        13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~L-s~H~~aVN~vRf~p~--gelLASg~D~g~v   89 (434)
T KOG1009|consen   13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSL-SRHTRAVNVVRFSPD--GELLASGGDGGEV   89 (434)
T ss_pred             CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecc-cCCcceeEEEEEcCC--cCeeeecCCCceE
Confidence            35899999998766 99999999999999875321         22334 789999999999999  8999999999999


Q ss_pred             EEEECCCCCC----CCC--CCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCcc
Q 004468          120 RLFNLSRFSG----RGL--DDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQEC  193 (751)
Q Consensus       120 ~vwd~~~~~~----~~~--~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~  193 (751)
                      .+|-...-.-    .+.  ..........+.+|...|..++|+| ++.++++++.|.++++||+..+...          
T Consensus        90 ~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~-d~~~l~s~s~dns~~l~Dv~~G~l~----------  158 (434)
T KOG1009|consen   90 FLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSP-DSNFLVSGSVDNSVRLWDVHAGQLL----------  158 (434)
T ss_pred             EEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccC-CCceeeeeeccceEEEEEeccceeE----------
Confidence            9998762000    000  1111344567788999999999999 6789999999999999999998632          


Q ss_pred             ceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCC--------CCCCCCccc
Q 004468          194 RNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQK--------RMSPPPCVN  265 (751)
Q Consensus       194 ~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~--------~~~~~~~~~  265 (751)
                                     .....|...+..++|.|- ..++++-+.|...+.+.+...+.+.....        ........+
T Consensus       159 ---------------~~~~dh~~yvqgvawDpl-~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~r  222 (434)
T KOG1009|consen  159 ---------------AILDDHEHYVQGVAWDPL-NQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTR  222 (434)
T ss_pred             ---------------eeccccccccceeecchh-hhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceee
Confidence                           223347778889999994 78899999998777777765443222110        001111111


Q ss_pred             cccccccccCCccccceEEEEEcCCCCEEEEEeC----CC-----cEEEEECCCCCcc
Q 004468          266 YFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS----GE-----HVYLMDVNHAGGR  314 (751)
Q Consensus       266 ~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~----d~-----~I~lwdl~~~~~~  314 (751)
                      .|....+.     . -...++|+|||..|++...    ++     ..|+|+-...+.+
T Consensus       223 LfhDeTlk-----s-FFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP  274 (434)
T KOG1009|consen  223 LFHDETLK-----S-FFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRP  274 (434)
T ss_pred             eeecCchh-----h-hhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCc
Confidence            11111111     1 2467899999999998754    23     3466655543333

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.61  E-value=3.9e-15  Score=154.98  Aligned_cols=192  Identities=17%  Similarity=0.332  Sum_probs=145.8

Q ss_pred             ccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCC
Q 004468           38 RRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA  117 (751)
Q Consensus        38 ~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg  117 (751)
                      +..+..+....|.+.|.|-.|+|||.-|+|++.||.|+||.- +|-+..++ .....+|.|++|.|++ .+.+++.+.--
T Consensus        92 k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSr-sGMLRStl-~Q~~~~v~c~~W~p~S-~~vl~c~g~h~  168 (737)
T KOG1524|consen   92 KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSR-SGMLRSTV-VQNEESIRCARWAPNS-NSIVFCQGGHI  168 (737)
T ss_pred             ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEec-cchHHHHH-hhcCceeEEEEECCCC-CceEEecCCeE
Confidence            344667788999999999999999999999999999999994 45544444 4567889999999997 56666655443


Q ss_pred             cEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEE
Q 004468          118 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNIL  197 (751)
Q Consensus       118 ~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l  197 (751)
                      .|+  -+...          ..+..++.|.+-|.++.|++ -.++++|||+|-..++||-....                
T Consensus       169 ~IK--pL~~n----------~k~i~WkAHDGiiL~~~W~~-~s~lI~sgGED~kfKvWD~~G~~----------------  219 (737)
T KOG1524|consen  169 SIK--PLAAN----------SKIIRWRAHDGLVLSLSWST-QSNIIASGGEDFRFKIWDAQGAN----------------  219 (737)
T ss_pred             EEe--ecccc----------cceeEEeccCcEEEEeecCc-cccceeecCCceeEEeecccCcc----------------
Confidence            444  33321          23567889999999999999 55899999999999999965432                


Q ss_pred             EecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCc
Q 004468          198 LDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGR  277 (751)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  277 (751)
                                +.....|..+|++++|+|+  ..+++++. +++|+=..+                               
T Consensus       220 ----------Lf~S~~~ey~ITSva~npd--~~~~v~S~-nt~R~~~p~-------------------------------  255 (737)
T KOG1524|consen  220 ----------LFTSAAEEYAITSVAFNPE--KDYLLWSY-NTARFSSPR-------------------------------  255 (737)
T ss_pred             ----------cccCChhccceeeeeeccc--cceeeeee-eeeeecCCC-------------------------------
Confidence                      2233347889999999995  66776664 345522221                               


Q ss_pred             cccceEEEEEcCCCCEEEEEeCCCcEEEE
Q 004468          278 SSLHLTHVTFSPNGEEVLLSYSGEHVYLM  306 (751)
Q Consensus       278 ~~~~vt~v~fspdg~~Ll~~s~d~~I~lw  306 (751)
                       .+.|..++||+||..+++|+..|.+.+=
T Consensus       256 -~GSifnlsWS~DGTQ~a~gt~~G~v~~A  283 (737)
T KOG1524|consen  256 -VGSIFNLSWSADGTQATCGTSTGQLIVA  283 (737)
T ss_pred             -ccceEEEEEcCCCceeeccccCceEEEe
Confidence             1248999999999999999998877653

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.61  E-value=1.9e-14  Score=147.95  Aligned_cols=229  Identities=14%  Similarity=0.204  Sum_probs=171.4

Q ss_pred             cccccchhhhccccccEEeccCC-CcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCC
Q 004468           28 HSLQMHSSLVRRLSQERELEGHQ-GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETS  106 (751)
Q Consensus        28 ~~l~~~~~~i~~~~~~~~L~gH~-~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~  106 (751)
                      +-++.|+....++..++.+.|+. ..+.....++++++||..+..|.|.|....++..+.+++  -.+.|..++|+.+  
T Consensus       280 ky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K--ieG~v~~~~fsSd--  355 (514)
T KOG2055|consen  280 KYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK--IEGVVSDFTFSSD--  355 (514)
T ss_pred             eEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee--eccEEeeEEEecC--
Confidence            44566777777777777777776 457788999999999999999999999999999998883  5688999999987  


Q ss_pred             CcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCce--eEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCC
Q 004468          107 DELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRV--KKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCP  184 (751)
Q Consensus       107 ~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V--~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~  184 (751)
                      ++.|+.++.+|.|.+||+...          .+++.+.. .+.|  ++++.++ ++.+||+||..|.|-|||..+.... 
T Consensus       356 sk~l~~~~~~GeV~v~nl~~~----------~~~~rf~D-~G~v~gts~~~S~-ng~ylA~GS~~GiVNIYd~~s~~~s-  422 (514)
T KOG2055|consen  356 SKELLASGGTGEVYVWNLRQN----------SCLHRFVD-DGSVHGTSLCISL-NGSYLATGSDSGIVNIYDGNSCFAS-  422 (514)
T ss_pred             CcEEEEEcCCceEEEEecCCc----------ceEEEEee-cCccceeeeeecC-CCceEEeccCcceEEEeccchhhcc-
Confidence            788888899999999999975          33555542 3333  5667777 7789999999999999997653211 


Q ss_pred             CCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEe--CCCeEEEEeCCCCCCccccCCCCCCCC
Q 004468          185 PAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGG--SDAFARLYDRRMLPPLTSCQKRMSPPP  262 (751)
Q Consensus       185 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs--~D~~IriwD~~~~~~~~~~~~~~~~~~  262 (751)
                                        .....+.....-...|+++.|+|+ ..+|+.++  .+..+|+-.+.+......++..     
T Consensus       423 ------------------~~PkPik~~dNLtt~Itsl~Fn~d-~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~-----  478 (514)
T KOG2055|consen  423 ------------------TNPKPIKTVDNLTTAITSLQFNHD-AQILAIASRVKKNALRLVHVPSCTVFSNFPTS-----  478 (514)
T ss_pred             ------------------CCCCchhhhhhhheeeeeeeeCcc-hhhhhhhhhccccceEEEeccceeeeccCCCC-----
Confidence                              011112222334568999999994 78877766  4678888887665433222111     


Q ss_pred             ccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004468          263 CVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (751)
Q Consensus       263 ~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~  310 (751)
                                   +..-..|+|++|||.|.+|++|..+|.|.||.+..
T Consensus       479 -------------n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~h  513 (514)
T KOG2055|consen  479 -------------NTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLHH  513 (514)
T ss_pred             -------------CCcccceEEEEecCCCceEEeecCCCceeeEeecc
Confidence                         11122599999999999999999999999998763

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.60  E-value=1.3e-14  Score=148.35  Aligned_cols=202  Identities=23%  Similarity=0.311  Sum_probs=149.0

Q ss_pred             EEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCC
Q 004468           54 NAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLD  133 (751)
Q Consensus        54 ~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~  133 (751)
                      .+++|+.+|..|++|+.||++|||+..+...+... ..|.+.|.++.|+|+  +++|++-+.| ..+||++.++..    
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e-~~~~~eV~DL~FS~d--gk~lasig~d-~~~VW~~~~g~~----  219 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEE-IAHHAEVKDLDFSPD--GKFLASIGAD-SARVWSVNTGAA----  219 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhh-HhhcCccccceeCCC--CcEEEEecCC-ceEEEEeccCch----
Confidence            68999999999999999999999998877777777 789999999999999  8999999999 999999997521    


Q ss_pred             CCCCCCceee--cccCCceeEEEEecCC---C-CEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceec
Q 004468          134 DNAITPSALY--QCHTRRVKKLAVEVGN---P-HVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRS  207 (751)
Q Consensus       134 ~~~~~~~~~~--~~h~~~V~~l~~sp~~---~-~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  207 (751)
                            +...  ..-......+.|+.++   . .+++....-+.|+.||+...+.-           +++         .
T Consensus       220 ------~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~-----------~~l---------~  273 (398)
T KOG0771|consen  220 ------LARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGS-----------NFL---------R  273 (398)
T ss_pred             ------hhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccc-----------ccc---------c
Confidence                  2222  1223345667777632   1 23334445567888777654310           000         0


Q ss_pred             ccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEE
Q 004468          208 LADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTF  287 (751)
Q Consensus       208 ~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~f  287 (751)
                      ....-.....|.++++++ ++++++.|+.||.|-||+..+++.+             ++..      +.|.. .||.+.|
T Consensus       274 ~~~~~~~~~siSsl~VS~-dGkf~AlGT~dGsVai~~~~~lq~~-------------~~vk------~aH~~-~VT~ltF  332 (398)
T KOG0771|consen  274 LRKKIKRFKSISSLAVSD-DGKFLALGTMDGSVAIYDAKSLQRL-------------QYVK------EAHLG-FVTGLTF  332 (398)
T ss_pred             hhhhhhccCcceeEEEcC-CCcEEEEeccCCcEEEEEeceeeee-------------Eeeh------hhhee-eeeeEEE
Confidence            111111234799999999 5899999999999999999876533             2222      23434 5999999


Q ss_pred             cCCCCEEEEEeCCCcEEEEECCC
Q 004468          288 SPNGEEVLLSYSGEHVYLMDVNH  310 (751)
Q Consensus       288 spdg~~Ll~~s~d~~I~lwdl~~  310 (751)
                      +||.++++.-+.+..+.|..+.-
T Consensus       333 ~Pdsr~~~svSs~~~~~v~~l~v  355 (398)
T KOG0771|consen  333 SPDSRYLASVSSDNEAAVTKLAV  355 (398)
T ss_pred             cCCcCcccccccCCceeEEEEee
Confidence            99999999999999999988766

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.60  E-value=2e-13  Score=146.57  Aligned_cols=239  Identities=15%  Similarity=0.215  Sum_probs=179.9

Q ss_pred             cccEEeccCC-CcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcE
Q 004468           41 SQERELEGHQ-GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEV  119 (751)
Q Consensus        41 ~~~~~L~gH~-~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V  119 (751)
                      -+..++.||. +.|..|+|+ +|..|.|.+.+|.|.-||+.+++.+..+ ....+.|++++.+|.  +..++.|+.||.+
T Consensus        59 ~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~lk~~~~~-d~~gg~IWsiai~p~--~~~l~IgcddGvl  134 (691)
T KOG2048|consen   59 FLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTLKQKYNI-DSNGGAIWSIAINPE--NTILAIGCDDGVL  134 (691)
T ss_pred             eeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecccCceeEEe-cCCCcceeEEEeCCc--cceEEeecCCceE
Confidence            4566777775 579999999 4556888899999999999999999988 778899999999999  6899999999977


Q ss_pred             EEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEe
Q 004468          120 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD  199 (751)
Q Consensus       120 ~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~  199 (751)
                      ..+++...  +      ......+...+++|.+++|+| ++..+++|+.||.|++||...++..            .+.+
T Consensus       135 ~~~s~~p~--~------I~~~r~l~rq~sRvLslsw~~-~~~~i~~Gs~Dg~Iriwd~~~~~t~------------~~~~  193 (691)
T KOG2048|consen  135 YDFSIGPD--K------ITYKRSLMRQKSRVLSLSWNP-TGTKIAGGSIDGVIRIWDVKSGQTL------------HIIT  193 (691)
T ss_pred             EEEecCCc--e------EEEEeecccccceEEEEEecC-CccEEEecccCceEEEEEcCCCceE------------EEee
Confidence            77776642  1      122344556689999999999 5677899999999999999988643            1111


Q ss_pred             cccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccc
Q 004468          200 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS  279 (751)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  279 (751)
                      +....     .......-|.++.|-.  ...|++|..-|+|.+||...+..+.+.                    .-|..
T Consensus       194 ~~~d~-----l~k~~~~iVWSv~~Lr--d~tI~sgDS~G~V~FWd~~~gTLiqS~--------------------~~h~a  246 (691)
T KOG2048|consen  194 MQLDR-----LSKREPTIVWSVLFLR--DSTIASGDSAGTVTFWDSIFGTLIQSH--------------------SCHDA  246 (691)
T ss_pred             ecccc-----cccCCceEEEEEEEee--cCcEEEecCCceEEEEcccCcchhhhh--------------------hhhhc
Confidence            11111     0111345577887775  369999999999999999887655432                    11222


Q ss_pred             cceEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcc----eeeeecCCCceeEEeCCC
Q 004468          280 LHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGR----AMRYTVGDASKIMSFTPT  332 (751)
Q Consensus       280 ~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~----~~~~~~~~~~~~~~~sp~  332 (751)
                       .|.+++.++++++|++++.|+.|..|...+.+..    .....+++.++.+++.+.
T Consensus       247 -dVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~  302 (691)
T KOG2048|consen  247 -DVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN  302 (691)
T ss_pred             -ceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc
Confidence             4999999999999999999999999998886442    223345667777776664

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.60  E-value=8.8e-15  Score=154.79  Aligned_cols=204  Identities=18%  Similarity=0.237  Sum_probs=147.1

Q ss_pred             CcEEEEEECC-CCCEEEEEeCCCcEEEEeCCCCe-------EEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEE
Q 004468           51 GCVNAISWNS-KGSLLISGSDDTHINVWSYSSRK-------LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLF  122 (751)
Q Consensus        51 ~~V~~l~~s~-dg~~LaSgs~Dg~I~IWd~~~~~-------~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vw  122 (751)
                      ..|+.+.|+| |...||.|++||.|+||.+..+.       ....+ ++|...|+++.|+|-. .+.|++++.|.+|++|
T Consensus       628 t~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~l-t~h~eKI~slRfHPLA-advLa~asyd~Ti~lW  705 (1012)
T KOG1445|consen  628 TLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKIL-TIHGEKITSLRFHPLA-ADVLAVASYDSTIELW  705 (1012)
T ss_pred             ceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceee-ecccceEEEEEecchh-hhHhhhhhccceeeee
Confidence            4689999999 78899999999999999986432       23334 7899999999999986 6899999999999999


Q ss_pred             ECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEeccc
Q 004468          123 NLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRC  202 (751)
Q Consensus       123 d~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~  202 (751)
                      |+...          .....+.+|++.|.+++|+| +++.+++.+.||+|++|..|.+......+.+..           
T Consensus       706 Dl~~~----------~~~~~l~gHtdqIf~~AWSp-dGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpv-----------  763 (1012)
T KOG1445|consen  706 DLANA----------KLYSRLVGHTDQIFGIAWSP-DGRRIATVCKDGTLRVYEPRSREQPVYEGKGPV-----------  763 (1012)
T ss_pred             ehhhh----------hhhheeccCcCceeEEEECC-CCcceeeeecCceEEEeCCCCCCCccccCCCCc-----------
Confidence            99975          34567899999999999999 779999999999999999998764422211110           


Q ss_pred             CceecccCCCCCccceEEEEEeCCCCcEEEEEeCC----CeEEEEeCCCCCC--ccccCCCCCCCCccccccccccccCC
Q 004468          203 GAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD----AFARLYDRRMLPP--LTSCQKRMSPPPCVNYFCPMHLSEHG  276 (751)
Q Consensus       203 ~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D----~~IriwD~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g  276 (751)
                                  ...--.|.|.- +++++++.+.|    ..|.+||..+...  +......         ..|       
T Consensus       764 ------------gtRgARi~wac-dgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lD---------vap-------  814 (1012)
T KOG1445|consen  764 ------------GTRGARILWAC-DGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLD---------VAP-------  814 (1012)
T ss_pred             ------------cCcceeEEEEe-cCcEEEEecccccchhhhhhhhhhhccCCcceeeeec---------ccC-------
Confidence                        11223445555 46777777665    5688888876541  1110000         000       


Q ss_pred             ccccceEEEEEcCCCCE-EEEEeCCCcEEEEECCCC
Q 004468          277 RSSLHLTHVTFSPNGEE-VLLSYSGEHVYLMDVNHA  311 (751)
Q Consensus       277 ~~~~~vt~v~fspdg~~-Ll~~s~d~~I~lwdl~~~  311 (751)
                          .+.--.+.+|.+. +++|-+|..|++|.+-..
T Consensus       815 ----s~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~e  846 (1012)
T KOG1445|consen  815 ----SPLVPHYDYDSNVLFLTGKGDRFVNMYEVIYE  846 (1012)
T ss_pred             ----ccccccccCCCceEEEecCCCceEEEEEecCC
Confidence                0111234556554 556667999999998774

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.60  E-value=6e-14  Score=138.27  Aligned_cols=236  Identities=17%  Similarity=0.208  Sum_probs=171.4

Q ss_pred             CcEEEEEEC-------CCCCEEEEEeCCCcEEEEeCCCCeEEEEecc-cCC---cceEEEEEecCCCCcEEEEEECCCcE
Q 004468           51 GCVNAISWN-------SKGSLLISGSDDTHINVWSYSSRKLLHSIET-GHS---ANVFCTKFVPETSDELVVSGAGDAEV  119 (751)
Q Consensus        51 ~~V~~l~~s-------~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~-~h~---~~V~~v~fsp~s~~~~l~sgs~Dg~V  119 (751)
                      +.|...+|-       |+..++|+.+.|.-|.+||..+|+....+.. .|.   .+..|++|+|+  |..|+.| ....|
T Consensus       105 ~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~D--GeqlfaG-ykrci  181 (406)
T KOG2919|consen  105 ETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPD--GEQLFAG-YKRCI  181 (406)
T ss_pred             CEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCC--CCeEeec-ccceE
Confidence            467777885       5778999999999999999999988776621 232   35679999999  7888875 56899


Q ss_pred             EEEECCCCCCCCCCCCCCCCcee-----ecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccc
Q 004468          120 RLFNLSRFSGRGLDDNAITPSAL-----YQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECR  194 (751)
Q Consensus       120 ~vwd~~~~~~~~~~~~~~~~~~~-----~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~  194 (751)
                      +|+|+..+-..+       ++..     -.+..+-+.+++|+|.+...++.|+.-.++-||.-....++           
T Consensus       182 rvFdt~RpGr~c-------~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl-----------  243 (406)
T KOG2919|consen  182 RVFDTSRPGRDC-------PVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPL-----------  243 (406)
T ss_pred             EEeeccCCCCCC-------cchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCce-----------
Confidence            999996532222       1222     22347789999999999889999999888888776555433           


Q ss_pred             eEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEe-CCCeEEEEeCCCCC-CccccCCCCCCCCcccccccccc
Q 004468          195 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGG-SDAFARLYDRRMLP-PLTSCQKRMSPPPCVNYFCPMHL  272 (751)
Q Consensus       195 ~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs-~D~~IriwD~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  272 (751)
                                    ....+|...|+.+.|.++ ++.|.+|+ .|..|-.||+|... ++..+..              |.
T Consensus       244 --------------~llggh~gGvThL~~~ed-Gn~lfsGaRk~dkIl~WDiR~~~~pv~~L~r--------------hv  294 (406)
T KOG2919|consen  244 --------------QLLGGHGGGVTHLQWCED-GNKLFSGARKDDKILCWDIRYSRDPVYALER--------------HV  294 (406)
T ss_pred             --------------eeecccCCCeeeEEeccC-cCeecccccCCCeEEEEeehhccchhhhhhh--------------hc
Confidence                          222357889999999996 56666665 58899999999653 2222211              11


Q ss_pred             ccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCC-cceeeeecCCCceeEEeCCCCCCcccCC
Q 004468          273 SEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG-GRAMRYTVGDASKIMSFTPTLNGLELQP  340 (751)
Q Consensus       273 ~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~-~~~~~~~~~~~~~~~~~sp~~~~~~~~~  340 (751)
                         +.++..| -....|+|++|++|+.||.|++||+++.. ...+........+.++++|.+..++...
T Consensus       295 ---~~TNQRI-~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatss  359 (406)
T KOG2919|consen  295 ---GDTNQRI-LFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSS  359 (406)
T ss_pred             ---cCccceE-EEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeecc
Confidence               1122222 35667999999999999999999999954 4566666788888999999876665443

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.59  E-value=4e-14  Score=137.62  Aligned_cols=205  Identities=15%  Similarity=0.246  Sum_probs=152.5

Q ss_pred             cCCCcEEEEEECC-CCCEEEEEeCCCcEEEEeCCCCeE--EEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEEC
Q 004468           48 GHQGCVNAISWNS-KGSLLISGSDDTHINVWSYSSRKL--LHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNL  124 (751)
Q Consensus        48 gH~~~V~~l~~s~-dg~~LaSgs~Dg~I~IWd~~~~~~--~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~  124 (751)
                      .|..++++..|+. +-++|.+.|-|.+..|||++++..  +.+-+..|...|+.|+|...+ -+.|||++.||+||+||+
T Consensus       148 ~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s-~~~FASvgaDGSvRmFDL  226 (364)
T KOG0290|consen  148 EFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGS-RDVFASVGADGSVRMFDL  226 (364)
T ss_pred             ccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCc-cceEEEecCCCcEEEEEe
Confidence            3567899999997 778999999999999999998633  333337999999999999975 589999999999999999


Q ss_pred             CCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCC-CcEEEEecCCCCCCCCCCCCCCccceEEEecccC
Q 004468          125 SRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED-GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCG  203 (751)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~D-g~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~  203 (751)
                      +......       .+..-.....+...++|++.+++++++-..| ..|.|.|+|.+...                    
T Consensus       227 R~leHST-------IIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tp--------------------  279 (364)
T KOG0290|consen  227 RSLEHST-------IIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTP--------------------  279 (364)
T ss_pred             cccccce-------EEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcc--------------------
Confidence            9643211       0111112256778899999999999987765 46889999987532                    


Q ss_pred             ceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceE
Q 004468          204 AKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLT  283 (751)
Q Consensus       204 ~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt  283 (751)
                          +....+|...|+.++|.|..+..|.+++.|..+-|||+.....-.     ...|  ...+         .....|+
T Consensus       280 ----va~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~-----~~dP--ilay---------~a~~EVN  339 (364)
T KOG0290|consen  280 ----VARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPREN-----GEDP--ILAY---------TAGGEVN  339 (364)
T ss_pred             ----eehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccC-----CCCc--hhhh---------hccceee
Confidence                445566899999999999888999999999999999997543100     0000  0011         0122599


Q ss_pred             EEEEcC-CCCEEEEEeCC
Q 004468          284 HVTFSP-NGEEVLLSYSG  300 (751)
Q Consensus       284 ~v~fsp-dg~~Ll~~s~d  300 (751)
                      .+.|++ .+.+|+++...
T Consensus       340 qi~Ws~~~~Dwiai~~~k  357 (364)
T KOG0290|consen  340 QIQWSSSQPDWIAICFGK  357 (364)
T ss_pred             eeeecccCCCEEEEEecC
Confidence            999996 56677776653

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.59  E-value=1.2e-13  Score=136.30  Aligned_cols=231  Identities=15%  Similarity=0.189  Sum_probs=171.5

Q ss_pred             EeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCC---eEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEE
Q 004468           45 ELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSR---KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRL  121 (751)
Q Consensus        45 ~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~---~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~v  121 (751)
                      .+.--..+|+|.+|++|++.+|.+-....|.||.....   +..+++ ..|...|++|.|.|.  .+.|++|+.|..-+|
T Consensus         5 ~~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htl-s~Hd~~vtgvdWap~--snrIvtcs~drnayV   81 (361)
T KOG1523|consen    5 VFHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTL-SEHDKIVTGVDWAPK--SNRIVTCSHDRNAYV   81 (361)
T ss_pred             EeeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceeh-hhhCcceeEEeecCC--CCceeEccCCCCccc
Confidence            34444679999999999999999999999999987644   466777 789999999999999  589999999999999


Q ss_pred             EECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecc
Q 004468          122 FNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLR  201 (751)
Q Consensus       122 wd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~  201 (751)
                      |....+       ...++..++..|+..++++.|+| ..+.|++||.-..|-+|-++....              -|-  
T Consensus        82 w~~~~~-------~~WkptlvLlRiNrAAt~V~WsP-~enkFAVgSgar~isVcy~E~ENd--------------WWV--  137 (361)
T KOG1523|consen   82 WTQPSG-------GTWKPTLVLLRINRAATCVKWSP-KENKFAVGSGARLISVCYYEQEND--------------WWV--  137 (361)
T ss_pred             cccCCC-------CeeccceeEEEeccceeeEeecC-cCceEEeccCccEEEEEEEecccc--------------eeh--
Confidence            998532       22467778888999999999999 779999999999999998876431              000  


Q ss_pred             cCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCcccccccccc-ccCCcccc
Q 004468          202 CGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHL-SEHGRSSL  280 (751)
Q Consensus       202 ~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~  280 (751)
                           ...........|++++|+|+ +-++++|+.|+.+|++..-- +.+   ..+..+..--..+.-+.+ .+.....+
T Consensus       138 -----sKhikkPirStv~sldWhpn-nVLlaaGs~D~k~rVfSayI-K~V---dekpap~pWgsk~PFG~lm~E~~~~gg  207 (361)
T KOG1523|consen  138 -----SKHIKKPIRSTVTSLDWHPN-NVLLAAGSTDGKCRVFSAYI-KGV---DEKPAPTPWGSKMPFGQLMSEASSSGG  207 (361)
T ss_pred             -----hhhhCCccccceeeeeccCC-cceecccccCcceeEEEEee-ecc---ccCCCCCCCccCCcHHHHHHhhccCCC
Confidence                 00011124567999999994 78999999999999997531 111   111111111111111111 11223455


Q ss_pred             ceEEEEEcCCCCEEEEEeCCCcEEEEECCCCC
Q 004468          281 HLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG  312 (751)
Q Consensus       281 ~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~  312 (751)
                      +|..+.|+|+|..|+-.+.|..|.+-|...+.
T Consensus       208 wvh~v~fs~sG~~lawv~Hds~v~~~da~~p~  239 (361)
T KOG1523|consen  208 WVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS  239 (361)
T ss_pred             ceeeeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence            79999999999999999999999999988754

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.58  E-value=3.4e-14  Score=136.46  Aligned_cols=241  Identities=15%  Similarity=0.185  Sum_probs=162.7

Q ss_pred             ccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEE
Q 004468           42 QERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRL  121 (751)
Q Consensus        42 ~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~v  121 (751)
                      +...|++|.+.|+++.|-.+++ |.+|..-|.|++|++.+.+.+..+...|...|+.+.-.|+   ..+.+-+.|+.+.+
T Consensus         6 P~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~---d~l~tqgRd~~L~l   81 (323)
T KOG0322|consen    6 PFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN---DSLDTQGRDPLLIL   81 (323)
T ss_pred             CeeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC---cchhhcCCCceEEE
Confidence            5677889999999999998876 8899999999999999988888774467889999998886   57888899999999


Q ss_pred             EECCCCCCCCC-----------------CC------------CCC--------CCceee------cccCCceeEEEEecC
Q 004468          122 FNLSRFSGRGL-----------------DD------------NAI--------TPSALY------QCHTRRVKKLAVEVG  158 (751)
Q Consensus       122 wd~~~~~~~~~-----------------~~------------~~~--------~~~~~~------~~h~~~V~~l~~sp~  158 (751)
                      |++..+.-...                 ..            ...        .+.++.      ....+.|.+..+..+
T Consensus        82 w~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~  161 (323)
T KOG0322|consen   82 WTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHA  161 (323)
T ss_pred             EEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeecccc
Confidence            99985211000                 00            000        000000      112355666665443


Q ss_pred             CCC--EEEEEeCCCcEEEEecCCCCCCCC----------CCCCCCccc-------------------eEEEecccC--ce
Q 004468          159 NPH--VVWSASEDGTLRQHDFRQGSSCPP----------AGSSHQECR-------------------NILLDLRCG--AK  205 (751)
Q Consensus       159 ~~~--~l~s~s~Dg~I~iwDlr~~~~~~~----------~~~~~~~~~-------------------~~l~~~~~~--~~  205 (751)
                      ++.  +++.|-++|.|.+||+.++.....          .....+...                   .+.+.+...  ..
T Consensus       162 c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gsl  241 (323)
T KOG0322|consen  162 CGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSL  241 (323)
T ss_pred             ccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcc
Confidence            333  456677899999999999733211          001111111                   111221111  00


Q ss_pred             ecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEE
Q 004468          206 RSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHV  285 (751)
Q Consensus       206 ~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v  285 (751)
                      ..-.+..-....|..+.+-| |++.+++++.|+.||||..+++.++..+                    ..|.. .|+++
T Consensus       242 q~~~e~~lknpGv~gvrIRp-D~KIlATAGWD~RiRVyswrtl~pLAVL--------------------kyHsa-gvn~v  299 (323)
T KOG0322|consen  242 QIRKEITLKNPGVSGVRIRP-DGKILATAGWDHRIRVYSWRTLNPLAVL--------------------KYHSA-GVNAV  299 (323)
T ss_pred             cccceEEecCCCccceEEcc-CCcEEeecccCCcEEEEEeccCCchhhh--------------------hhhhc-ceeEE
Confidence            00000011223567788889 5899999999999999999999877543                    12443 59999


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEEC
Q 004468          286 TFSPNGEEVLLSYSGEHVYLMDV  308 (751)
Q Consensus       286 ~fspdg~~Ll~~s~d~~I~lwdl  308 (751)
                      +|+|+...+++++.|+.|.||++
T Consensus       300 Afspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  300 AFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             EeCCCCchhhhccCCceEEeeec
Confidence            99999999999999999999986

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.56  E-value=1.8e-13  Score=151.49  Aligned_cols=235  Identities=18%  Similarity=0.160  Sum_probs=170.1

Q ss_pred             cccchhhhccccccEEeccCCCcEEEEEECC-CCCEEEEEeCCCcEEEEeCCCCeE-----EEEecccCCcceEEEEEec
Q 004468           30 LQMHSSLVRRLSQERELEGHQGCVNAISWNS-KGSLLISGSDDTHINVWSYSSRKL-----LHSIETGHSANVFCTKFVP  103 (751)
Q Consensus        30 l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~-dg~~LaSgs~Dg~I~IWd~~~~~~-----~~~l~~~h~~~V~~v~fsp  103 (751)
                      +.+|+..-. ..+...|. -...|.|++|+| +..+||.|..+|.|.+||+..+..     +......|..+|+.+.|..
T Consensus       224 ~~vW~~~~p-~~Pe~~~~-~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~  301 (555)
T KOG1587|consen  224 LLVWSLKNP-NTPELVLE-SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQ  301 (555)
T ss_pred             EEEEecCCC-CCceEEEe-cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEec
Confidence            444443333 55666665 356899999999 677999999999999999986654     2223357999999999998


Q ss_pred             CCCCcEEEEEECCCcEEEEECCCCCCCC----C-------------------------------------------CC--
Q 004468          104 ETSDELVVSGAGDAEVRLFNLSRFSGRG----L-------------------------------------------DD--  134 (751)
Q Consensus       104 ~s~~~~l~sgs~Dg~V~vwd~~~~~~~~----~-------------------------------------------~~--  134 (751)
                      +..+.-|++++.||.|+.|+++......    .                                           ..  
T Consensus       302 ~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~  381 (555)
T KOG1587|consen  302 NEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYT  381 (555)
T ss_pred             cCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCc
Confidence            7544569999999999999987422100    0                                           00  


Q ss_pred             ----CCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccC
Q 004468          135 ----NAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLAD  210 (751)
Q Consensus       135 ----~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  210 (751)
                          ..++....+..|.++|+.+.++|....+|++++ |-+++||........                        +..
T Consensus       382 ~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~P------------------------l~~  436 (555)
T KOG1587|consen  382 PAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASP------------------------LLS  436 (555)
T ss_pred             ccccccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCc------------------------chh
Confidence                011334466778999999999998888888877 899999987632211                        111


Q ss_pred             CCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCC
Q 004468          211 PPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPN  290 (751)
Q Consensus       211 ~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspd  290 (751)
                      ...+...|++++|||..+..|+++..||.|.|||+.......         .+.+..         + ....+.+.|+++
T Consensus       437 ~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~P---------v~s~~~---------~-~~~l~~~~~s~~  497 (555)
T KOG1587|consen  437 LDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEP---------VLSQKV---------C-SPALTRVRWSPN  497 (555)
T ss_pred             hhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCC---------cccccc---------c-ccccceeecCCC
Confidence            222445699999999999999999999999999998543211         111111         1 224788899999


Q ss_pred             CCEEEEEeCCCcEEEEECCC
Q 004468          291 GEEVLLSYSGEHVYLMDVNH  310 (751)
Q Consensus       291 g~~Ll~~s~d~~I~lwdl~~  310 (751)
                      |+.|++|...|.+++|++..
T Consensus       498 g~~lavGd~~G~~~~~~l~~  517 (555)
T KOG1587|consen  498 GKLLAVGDANGTTHILKLSE  517 (555)
T ss_pred             CcEEEEecCCCcEEEEEcCc
Confidence            99999999999999999976

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.56  E-value=2.7e-12  Score=142.18  Aligned_cols=206  Identities=19%  Similarity=0.175  Sum_probs=136.8

Q ss_pred             CCcEEEEeCCCC-eEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCc
Q 004468           71 DTHINVWSYSSR-KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRR  149 (751)
Q Consensus        71 Dg~I~IWd~~~~-~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~  149 (751)
                      ++.+.||++... .....+  .-...|.|++|+|.. ..+++.|..+|.|.+||+........    ...-....+|..+
T Consensus       221 ~~~~~vW~~~~p~~Pe~~~--~~~s~v~~~~f~p~~-p~ll~gG~y~GqV~lWD~~~~~~~~~----s~ls~~~~sh~~~  293 (555)
T KOG1587|consen  221 DGVLLVWSLKNPNTPELVL--ESPSEVTCLKFCPFD-PNLLAGGCYNGQVVLWDLRKGSDTPP----SGLSALEVSHSEP  293 (555)
T ss_pred             CceEEEEecCCCCCceEEE--ecCCceeEEEeccCC-cceEEeeccCceEEEEEccCCCCCCC----cccccccccCCcC
Confidence            457999999866 233333  457889999999997 78999999999999999997543211    0112233569999


Q ss_pred             eeEEEEecCCC-CEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCC
Q 004468          150 VKKLAVEVGNP-HVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRP  228 (751)
Q Consensus       150 V~~l~~sp~~~-~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~  228 (751)
                      |..+.|...-. .-|++++.||.|..|+++.-........         .+...    ...........+++++|.|.++
T Consensus       294 v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~---------~~~~~----~~~~~~~~~~~~t~~~F~~~~p  360 (555)
T KOG1587|consen  294 VTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLL---------LESKK----HKGQQSSKAVGATSLKFEPTDP  360 (555)
T ss_pred             eEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcc---------ccccc----ccccccccccceeeEeeccCCC
Confidence            99999976221 3478999999999999887653211100         00000    0011112346789999999999


Q ss_pred             cEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004468          229 HLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDV  308 (751)
Q Consensus       229 ~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl  308 (751)
                      ..+++|+.+|.|.--.....++...           ..|. .+..-..|.+ +|+.+.++|=+..++.++.|-+|+||.-
T Consensus       361 ~~FiVGTe~G~v~~~~r~g~~~~~~-----------~~~~-~~~~~~~h~g-~v~~v~~nPF~~k~fls~gDW~vriWs~  427 (555)
T KOG1587|consen  361 NHFIVGTEEGKVYKGCRKGYTPAPE-----------VSYK-GHSTFITHIG-PVYAVSRNPFYPKNFLSVGDWTVRIWSE  427 (555)
T ss_pred             ceEEEEcCCcEEEEEeccCCccccc-----------cccc-ccccccccCc-ceEeeecCCCccceeeeeccceeEeccc
Confidence            9999999999998755443322110           0111 1111122333 6999999998887777777999999975


Q ss_pred             C
Q 004468          309 N  309 (751)
Q Consensus       309 ~  309 (751)
                      .
T Consensus       428 ~  428 (555)
T KOG1587|consen  428 D  428 (555)
T ss_pred             c
Confidence            5

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.55  E-value=8.3e-14  Score=138.49  Aligned_cols=248  Identities=16%  Similarity=0.192  Sum_probs=170.4

Q ss_pred             ccccchhhhccccccEEeccCCCcEEEEEECC--CCCEEEEEeCCCcEEEEeCCCCeEEEEec-ccCC-cceEEEEEecC
Q 004468           29 SLQMHSSLVRRLSQERELEGHQGCVNAISWNS--KGSLLISGSDDTHINVWSYSSRKLLHSIE-TGHS-ANVFCTKFVPE  104 (751)
Q Consensus        29 ~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~--dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~-~~h~-~~V~~v~fsp~  104 (751)
                      .+++++.  .+++...++++|.+.++.+.|..  .+..+.||+.||+|++||+........+. +.|. .+..|++-.-.
T Consensus        51 sv~lyd~--~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck  128 (376)
T KOG1188|consen   51 SVRLYDK--GTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCK  128 (376)
T ss_pred             eEEEEec--cchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCc
Confidence            4444443  34678889999999999999987  56789999999999999998765554432 4555 34455554433


Q ss_pred             CCCcEEEEEE----CCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCC
Q 004468          105 TSDELVVSGA----GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQG  180 (751)
Q Consensus       105 s~~~~l~sgs----~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~  180 (751)
                        ++++++|.    .|-.|.+||++..+.        ..-.....|.+-|+++.|+|.++++|+|||-||-|-+||+...
T Consensus       129 --~~ii~~GtE~~~s~A~v~lwDvR~~qq--------~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d  198 (376)
T KOG1188|consen  129 --KNIIACGTELTRSDASVVLWDVRSEQQ--------LLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKD  198 (376)
T ss_pred             --CCeEEeccccccCceEEEEEEeccccc--------hhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCC
Confidence              57777774    477899999997532        1233457899999999999999999999999999999999875


Q ss_pred             CCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCC-
Q 004468          181 SSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMS-  259 (751)
Q Consensus       181 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~-  259 (751)
                      ..        .+....++              .+...|.++.|....-+.|.+-+...+..+|++..+.+...+..+.. 
T Consensus       199 ~E--------eDaL~~vi--------------N~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~  256 (376)
T KOG1188|consen  199 NE--------EDALLHVI--------------NHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVS  256 (376)
T ss_pred             cc--------hhhHHHhh--------------cccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccch
Confidence            31        11111111              14556889999886556788888889999999988775444322210 


Q ss_pred             ------------------C---------CCc---cccc-----ccccc-----ccCCccccceEEEEEcCCCCEEEEEeC
Q 004468          260 ------------------P---------PPC---VNYF-----CPMHL-----SEHGRSSLHLTHVTFSPNGEEVLLSYS  299 (751)
Q Consensus       260 ------------------~---------~~~---~~~~-----~~~~~-----~~~g~~~~~vt~v~fspdg~~Ll~~s~  299 (751)
                                        +         ..+   ...|     .++..     ...|+...-|.++.|...+..+++|+.
T Consensus       257 ~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGE  336 (376)
T KOG1188|consen  257 ADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGE  336 (376)
T ss_pred             hhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCC
Confidence                              0         000   0000     00000     012322234778888888999999999


Q ss_pred             CCcEEEEECCC
Q 004468          300 GEHVYLMDVNH  310 (751)
Q Consensus       300 d~~I~lwdl~~  310 (751)
                      ||.+.+|....
T Consensus       337 DG~l~~Wk~~d  347 (376)
T KOG1188|consen  337 DGLLQAWKVED  347 (376)
T ss_pred             CceEEEEecCC
Confidence            99999998644

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.50  E-value=2e-11  Score=128.02  Aligned_cols=218  Identities=14%  Similarity=0.170  Sum_probs=139.6

Q ss_pred             ccccccchhhhccccccEEe-ccCCCcEEEEEECC--CCCEEEEEeCCCcEEEEeCCCC----------eEEEEecccCC
Q 004468           27 NHSLQMHSSLVRRLSQEREL-EGHQGCVNAISWNS--KGSLLISGSDDTHINVWSYSSR----------KLLHSIETGHS   93 (751)
Q Consensus        27 ~~~l~~~~~~i~~~~~~~~L-~gH~~~V~~l~~s~--dg~~LaSgs~Dg~I~IWd~~~~----------~~~~~l~~~h~   93 (751)
                      +.++.+|+.+  ..|+.+.+ .||...|.+++|-|  +.++++||+.|..|+|+|+..-          .....+ ..|.
T Consensus        71 D~r~ivWd~~--~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~-~cht  147 (758)
T KOG1310|consen   71 DTRLIVWDPF--EYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCW-SCHT  147 (758)
T ss_pred             cceEEeecch--hcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCccchhhhh-hhhh
Confidence            5778888888  34455544 69999999999999  4569999999999999998741          122223 6799


Q ss_pred             cceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEE
Q 004468           94 ANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLR  173 (751)
Q Consensus        94 ~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~  173 (751)
                      ..|--++-.|.. ...+.+++.||+|+-+|++.+..-.........+..+...--..+++..+|..+++|+.|+.|-..+
T Consensus       148 ~rVKria~~p~~-PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfar  226 (758)
T KOG1310|consen  148 DRVKRIATAPNG-PHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFAR  226 (758)
T ss_pred             hhhhheecCCCC-CceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhh
Confidence            999999999984 5899999999999999998642111100000111112222345789999999999999999999999


Q ss_pred             EEecCCCCCCCCCCCC-----CCccceEEEecccCceecccC-CCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCC
Q 004468          174 QHDFRQGSSCPPAGSS-----HQECRNILLDLRCGAKRSLAD-PPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM  247 (751)
Q Consensus       174 iwDlr~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~~-~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~  247 (751)
                      +||.|...+.......     ...|..+-+-. .+....... .......++-+.|+|+ |.-|++.-..-.|+++|+..
T Consensus       227 LYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~-p~hlkn~~gn~~~~~~~~t~vtfnpN-GtElLvs~~gEhVYlfdvn~  304 (758)
T KOG1310|consen  227 LYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFS-PGHLKNSQGNLDRYITCCTYVTFNPN-GTELLVSWGGEHVYLFDVNE  304 (758)
T ss_pred             hhhhhhhccCCCCCccccCCCCcccchhheec-CccccCcccccccceeeeEEEEECCC-CcEEEEeeCCeEEEEEeecC
Confidence            9997654332111111     11222111110 011000000 0011123667889996 45555555556899999987


Q ss_pred             CCC
Q 004468          248 LPP  250 (751)
Q Consensus       248 ~~~  250 (751)
                      .+.
T Consensus       305 ~~~  307 (758)
T KOG1310|consen  305 DKS  307 (758)
T ss_pred             CCC
Confidence            664

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.49  E-value=1.9e-12  Score=143.84  Aligned_cols=224  Identities=13%  Similarity=0.123  Sum_probs=144.6

Q ss_pred             cEEeccCCCcEEEEEECCCCCEEEEEeCC---CcEEEEeCCCCeE--EEEecccCCcceEEEEEecCCCCcEEEEE-ECC
Q 004468           43 ERELEGHQGCVNAISWNSKGSLLISGSDD---THINVWSYSSRKL--LHSIETGHSANVFCTKFVPETSDELVVSG-AGD  116 (751)
Q Consensus        43 ~~~L~gH~~~V~~l~~s~dg~~LaSgs~D---g~I~IWd~~~~~~--~~~l~~~h~~~V~~v~fsp~s~~~~l~sg-s~D  116 (751)
                      .+.|..|...|...+|+|||+.||.++.+   ..|.+||+.+++.  +..+ .+|   ...++|+|+  |+.|+.+ +.+
T Consensus       196 ~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~-~g~---~~~~~wSPD--G~~La~~~~~~  269 (429)
T PRK01742        196 QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASF-RGH---NGAPAFSPD--GSRLAFASSKD  269 (429)
T ss_pred             ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecC-CCc---cCceeECCC--CCEEEEEEecC
Confidence            45677888899999999999999988754   3699999987753  2222 333   457899999  7777765 468


Q ss_pred             CcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceE
Q 004468          117 AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNI  196 (751)
Q Consensus       117 g~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~  196 (751)
                      +.+.||.+....         .....+..+...+....|+|++..+++++..+|...+|++......           ..
T Consensus       270 g~~~Iy~~d~~~---------~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~-----------~~  329 (429)
T PRK01742        270 GVLNIYVMGANG---------GTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGG-----------AS  329 (429)
T ss_pred             CcEEEEEEECCC---------CCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCC-----------eE
Confidence            877766443211         1234555677778899999954444545557888999987643211           00


Q ss_pred             EEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCC
Q 004468          197 LLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHG  276 (751)
Q Consensus       197 l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  276 (751)
                      +          + .   +..  .+..|+|+ +++|+.++.++ +.+||+.+++...              ...      .
T Consensus       330 ~----------l-~---~~~--~~~~~SpD-G~~ia~~~~~~-i~~~Dl~~g~~~~--------------lt~------~  371 (429)
T PRK01742        330 L----------V-G---GRG--YSAQISAD-GKTLVMINGDN-VVKQDLTSGSTEV--------------LSS------T  371 (429)
T ss_pred             E----------e-c---CCC--CCccCCCC-CCEEEEEcCCC-EEEEECCCCCeEE--------------ecC------C
Confidence            0          0 0   111  34679995 77887777765 4558987654211              000      0


Q ss_pred             ccccceEEEEEcCCCCEEEEEeCCCcEEEEECC--CCCcceeeeecCCCceeEEeCCCC
Q 004468          277 RSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVN--HAGGRAMRYTVGDASKIMSFTPTL  333 (751)
Q Consensus       277 ~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~--~~~~~~~~~~~~~~~~~~~~sp~~  333 (751)
                      .   ...++.|+|||++|+.++.++.+.+|.+.  ++........+.......+|+|..
T Consensus       372 ~---~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp~~  427 (429)
T PRK01742        372 F---LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFPAWSPYL  427 (429)
T ss_pred             C---CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCcccCCCC
Confidence            0   12457799999999999999888888763  233333333344455667777753

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.47  E-value=4.2e-12  Score=120.77  Aligned_cols=227  Identities=14%  Similarity=0.162  Sum_probs=149.5

Q ss_pred             cEEEEEECCCCCEEEEEeCCCcEEEEeCCC---------Ce-EEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEE
Q 004468           52 CVNAISWNSKGSLLISGSDDTHINVWSYSS---------RK-LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRL  121 (751)
Q Consensus        52 ~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~---------~~-~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~v  121 (751)
                      .|.+-+|+|.+++|+.|+.+|+|-+..+.+         ++ .+... ++|.++|+.++|..    .+|++|+ ||.|+=
T Consensus        12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~e-qahdgpiy~~~f~d----~~Lls~g-dG~V~g   85 (325)
T KOG0649|consen   12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPE-QAHDGPIYYLAFHD----DFLLSGG-DGLVYG   85 (325)
T ss_pred             HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeec-cccCCCeeeeeeeh----hheeecc-CceEEE
Confidence            455668999999999999999999998752         22 33334 79999999999993    5788776 599999


Q ss_pred             EECCCCCCCCCCCCCCCCcee--eccc-----CCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccc
Q 004468          122 FNLSRFSGRGLDDNAITPSAL--YQCH-----TRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECR  194 (751)
Q Consensus       122 wd~~~~~~~~~~~~~~~~~~~--~~~h-----~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~  194 (751)
                      |..........    .+++..  ...|     --.|+++-..|..+. ++.++.|+.++.||+++++.            
T Consensus        86 w~W~E~~es~~----~K~lwe~~~P~~~~~~evPeINam~ldP~enS-i~~AgGD~~~y~~dlE~G~i------------  148 (325)
T KOG0649|consen   86 WEWNEEEESLA----TKRLWEVKIPMQVDAVEVPEINAMWLDPSENS-ILFAGGDGVIYQVDLEDGRI------------  148 (325)
T ss_pred             eeehhhhhhcc----chhhhhhcCccccCcccCCccceeEeccCCCc-EEEecCCeEEEEEEecCCEE------------
Confidence            98764322000    011110  1112     235788888885544 44666999999999999862            


Q ss_pred             eEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCcccccccccccc
Q 004468          195 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSE  274 (751)
Q Consensus       195 ~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (751)
                                   .....+|...|.++.--. ....+++|+.||++||||.++.+.+..+..- ..+.|.          
T Consensus       149 -------------~r~~rGHtDYvH~vv~R~-~~~qilsG~EDGtvRvWd~kt~k~v~~ie~y-k~~~~l----------  203 (325)
T KOG0649|consen  149 -------------QREYRGHTDYVHSVVGRN-ANGQILSGAEDGTVRVWDTKTQKHVSMIEPY-KNPNLL----------  203 (325)
T ss_pred             -------------EEEEcCCcceeeeeeecc-cCcceeecCCCccEEEEeccccceeEEeccc-cChhhc----------
Confidence                         123345888898888743 2468999999999999999998765544211 111111          


Q ss_pred             CCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcceeeeecCCCceeEEeC
Q 004468          275 HGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFT  330 (751)
Q Consensus       275 ~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~~~~~~~~~~~~~~s  330 (751)
                      +.|.+.+|.+++-+.|  +|+ ++....+.||.+...... ..+.....+..+.|.
T Consensus       204 Rp~~g~wigala~~ed--Wlv-CGgGp~lslwhLrsse~t-~vfpipa~v~~v~F~  255 (325)
T KOG0649|consen  204 RPDWGKWIGALAVNED--WLV-CGGGPKLSLWHLRSSEST-CVFPIPARVHLVDFV  255 (325)
T ss_pred             CcccCceeEEEeccCc--eEE-ecCCCceeEEeccCCCce-EEEecccceeEeeee
Confidence            2233446777766544  555 445668999999995533 334333444444443

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.47  E-value=2e-12  Score=137.92  Aligned_cols=172  Identities=13%  Similarity=0.113  Sum_probs=123.8

Q ss_pred             ceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEE
Q 004468           95 NVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQ  174 (751)
Q Consensus        95 ~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~i  174 (751)
                      .|..++|-|+  |..|+.++ +..+.|||...+          ..++++++|.+.|++++|+. +|..|+||+.|+.|.+
T Consensus        14 ci~d~afkPD--GsqL~lAA-g~rlliyD~ndG----------~llqtLKgHKDtVycVAys~-dGkrFASG~aDK~VI~   79 (1081)
T KOG1538|consen   14 CINDIAFKPD--GTQLILAA-GSRLLVYDTSDG----------TLLQPLKGHKDTVYCVAYAK-DGKRFASGSADKSVII   79 (1081)
T ss_pred             chheeEECCC--CceEEEec-CCEEEEEeCCCc----------ccccccccccceEEEEEEcc-CCceeccCCCceeEEE
Confidence            7999999999  66666654 467999999975          45889999999999999999 7899999999999999


Q ss_pred             EecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCcccc
Q 004468          175 HDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSC  254 (751)
Q Consensus       175 wDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~  254 (751)
                      |.-.-...              +             .-.|...|.|+.|+|- .+.+++++-. ..-+|......     
T Consensus        80 W~~klEG~--------------L-------------kYSH~D~IQCMsFNP~-~h~LasCsLs-dFglWS~~qK~-----  125 (1081)
T KOG1538|consen   80 WTSKLEGI--------------L-------------KYSHNDAIQCMSFNPI-THQLASCSLS-DFGLWSPEQKS-----  125 (1081)
T ss_pred             ecccccce--------------e-------------eeccCCeeeEeecCch-HHHhhhcchh-hccccChhhhh-----
Confidence            97432211              0             0127788999999996 6778877654 34567654211     


Q ss_pred             CCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcceeee--ecCCCceeEEeCCC
Q 004468          255 QKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRY--TVGDASKIMSFTPT  332 (751)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~~~--~~~~~~~~~~~sp~  332 (751)
                               +..+         .....+.+++|..||++|+.|..+|+|.|=+-..........  +...++..++|+|.
T Consensus       126 ---------V~K~---------kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~  187 (1081)
T KOG1538|consen  126 ---------VSKH---------KSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPS  187 (1081)
T ss_pred             ---------HHhh---------hhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCC
Confidence                     1111         123358999999999999999999999998654422222222  12345566677664

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.44  E-value=3.5e-12  Score=142.76  Aligned_cols=261  Identities=15%  Similarity=0.242  Sum_probs=179.9

Q ss_pred             CCCchHHHHHhhhccCcC----cccccccccchhhhcc---ccccEE---eccCC----CcEEEEEECCCCCEEEEEeCC
Q 004468            6 FHDGSIYDMLDTRHTDTR----PDVNHSLQMHSSLVRR---LSQERE---LEGHQ----GCVNAISWNSKGSLLISGSDD   71 (751)
Q Consensus         6 ~~~~~~~~~l~~r~~~~~----~~~~~~l~~~~~~i~~---~~~~~~---L~gH~----~~V~~l~~s~dg~~LaSgs~D   71 (751)
                      |.+-+++++.--.+....    ..-+..+++|+++...   .+++.-   |.++.    +.=.-+.|.....+|+++|+-
T Consensus      1107 ~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~ 1186 (1387)
T KOG1517|consen 1107 FPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDV 1186 (1387)
T ss_pred             CCCCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCe
Confidence            445555555444444332    4457788899887654   333332   22221    111346787765566666668


Q ss_pred             CcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCc--
Q 004468           72 THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRR--  149 (751)
Q Consensus        72 g~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~--  149 (751)
                      ..|+|||.....++..+..+-...|+++.-.-.. |+.|+.|-.||.|++||.+.....       ..+...+.|+..  
T Consensus      1187 r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~-gn~i~AGfaDGsvRvyD~R~a~~d-------s~v~~~R~h~~~~~ 1258 (1387)
T KOG1517|consen 1187 RSIRIWDAHKEQVVADIPYGSSTLVTALSADLVH-GNIIAAGFADGSVRVYDRRMAPPD-------SLVCVYREHNDVEP 1258 (1387)
T ss_pred             eEEEEEecccceeEeecccCCCccceeecccccC-CceEEEeecCCceEEeecccCCcc-------ccceeecccCCccc
Confidence            8999999999999998877777788888766554 799999999999999999975433       347788889988  


Q ss_pred             eeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCc
Q 004468          150 VKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPH  229 (751)
Q Consensus       150 V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~  229 (751)
                      |..+.+.+.+-..|++|+.||.|++||+|.......        ..+...            -.....++++.+++. ..
T Consensus      1259 Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~--------~~iv~~------------~~yGs~lTal~VH~h-ap 1317 (1387)
T KOG1517|consen 1259 IVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETF--------LTIVAH------------WEYGSALTALTVHEH-AP 1317 (1387)
T ss_pred             ceeEEeecCCCcceeeeccCCeEEEEecccCccccc--------ceeeec------------cccCccceeeeeccC-CC
Confidence            999999884444588999999999999998521100        000000            001124899999994 78


Q ss_pred             EEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 004468          230 LLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVN  309 (751)
Q Consensus       230 ~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~  309 (751)
                      .+++|+. +.|+||++.-.+ +..+          + +.+..+   +.....+++++|+|---.|++|+.|..|.||...
T Consensus      1318 iiAsGs~-q~ikIy~~~G~~-l~~~----------k-~n~~F~---~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~ 1381 (1387)
T KOG1517|consen 1318 IIASGSA-QLIKIYSLSGEQ-LNII----------K-YNPGFM---GQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCE 1381 (1387)
T ss_pred             eeeecCc-ceEEEEecChhh-hccc----------c-cCcccc---cCcCCCcceeeecchhHhhhhccCCceEEEeecC
Confidence            9999988 999999986432 1111          1 112211   2233358999999999999999999999999877


Q ss_pred             CC
Q 004468          310 HA  311 (751)
Q Consensus       310 ~~  311 (751)
                      ..
T Consensus      1382 k~ 1383 (1387)
T KOG1517|consen 1382 KP 1383 (1387)
T ss_pred             Cc
Confidence            64

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.44  E-value=1.5e-11  Score=140.11  Aligned_cols=193  Identities=18%  Similarity=0.237  Sum_probs=133.9

Q ss_pred             EeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEe
Q 004468           77 WSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVE  156 (751)
Q Consensus        77 Wd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s  156 (751)
                      |++ .|..+..+ ..|...|..++.++.+ +.+|+|||.||+|++|+.....+..   ...+...++.--..++..+.+.
T Consensus      1034 W~p-~G~lVAhL-~Ehs~~v~k~a~s~~~-~s~FvsgS~DGtVKvW~~~k~~~~~---~s~rS~ltys~~~sr~~~vt~~ 1107 (1431)
T KOG1240|consen 1034 WNP-RGILVAHL-HEHSSAVIKLAVSSEH-TSLFVSGSDDGTVKVWNLRKLEGEG---GSARSELTYSPEGSRVEKVTMC 1107 (1431)
T ss_pred             CCc-cceEeehh-hhccccccceeecCCC-CceEEEecCCceEEEeeehhhhcCc---ceeeeeEEEeccCCceEEEEec
Confidence            665 47788888 7899999999999885 6999999999999999998644321   1123344454457788999988


Q ss_pred             cCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCc-EEEEEe
Q 004468          157 VGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPH-LLLVGG  235 (751)
Q Consensus       157 p~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~-~l~sgs  235 (751)
                      + +++.||.++.||.|++.++.......      ..+..          ..+....+....|..-+|...... .++.+.
T Consensus      1108 ~-~~~~~Av~t~DG~v~~~~id~~~~~~------~~~~~----------~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T 1170 (1431)
T KOG1240|consen 1108 G-NGDQFAVSTKDGSVRVLRIDHYNVSK------RVATQ----------VRIPNLKKDGVVVSMHAFTAIVQSHVLVYAT 1170 (1431)
T ss_pred             c-CCCeEEEEcCCCeEEEEEcccccccc------ceeee----------eecccccCCCceEEeecccccccceeEEEEE
Confidence            8 77899999999999999987632110      00000          001111111222333344433333 788888


Q ss_pred             CCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 004468          236 SDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (751)
Q Consensus       236 ~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~  311 (751)
                      .-+.|..||+++......++.                   ....+.|++++.+|.++++++|+..|.+-+||++-.
T Consensus      1171 ~~~~iv~~D~r~~~~~w~lk~-------------------~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~ 1227 (1431)
T KOG1240|consen 1171 DLSRIVSWDTRMRHDAWRLKN-------------------QLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFR 1227 (1431)
T ss_pred             eccceEEecchhhhhHHhhhc-------------------CccccceeEEEecCCceEEEEecCCceEEEEEeecC
Confidence            889999999998764433211                   011225999999999999999999999999999873

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.44  E-value=4.7e-11  Score=120.36  Aligned_cols=217  Identities=20%  Similarity=0.323  Sum_probs=148.8

Q ss_pred             CcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccc--CCcceEEEEEecCCCCcEEEE--EECCCcEEEEECCC
Q 004468           51 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETG--HSANVFCTKFVPETSDELVVS--GAGDAEVRLFNLSR  126 (751)
Q Consensus        51 ~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~--h~~~V~~v~fsp~s~~~~l~s--gs~Dg~V~vwd~~~  126 (751)
                      ..|.+|.++  -++|+.+=.+ .|.|||+.+.+.++++..-  +...+  ++++|+..+.+++-  .-.-|.|.|||+..
T Consensus        88 t~IL~VrmN--r~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl--~AlS~n~~n~ylAyp~s~t~GdV~l~d~~n  162 (391)
T KOG2110|consen   88 TSILAVRMN--RKRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGL--CALSPNNANCYLAYPGSTTSGDVVLFDTIN  162 (391)
T ss_pred             CceEEEEEc--cceEEEEEcc-cEEEEecccceeehhhhccCCCccce--EeeccCCCCceEEecCCCCCceEEEEEccc
Confidence            456666665  3577777665 4999999999999998544  44444  45555543677773  23468999999986


Q ss_pred             CCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCc-EEEEecCCCCCCCCCCCCCCccceEEEecccCce
Q 004468          127 FSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGT-LRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAK  205 (751)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~-I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~  205 (751)
                      -          +++..+.+|.+.+-+++|++ +|.+|||+|+.|+ ||+|.+.+++.              ++.++.|. 
T Consensus       163 l----------~~v~~I~aH~~~lAalafs~-~G~llATASeKGTVIRVf~v~~G~k--------------l~eFRRG~-  216 (391)
T KOG2110|consen  163 L----------QPVNTINAHKGPLAALAFSP-DGTLLATASEKGTVIRVFSVPEGQK--------------LYEFRRGT-  216 (391)
T ss_pred             c----------eeeeEEEecCCceeEEEECC-CCCEEEEeccCceEEEEEEcCCccE--------------eeeeeCCc-
Confidence            4          66888999999999999999 7899999999998 57999988763              34444443 


Q ss_pred             ecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCC---------------CCCc-------
Q 004468          206 RSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMS---------------PPPC-------  263 (751)
Q Consensus       206 ~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~---------------~~~~-------  263 (751)
                              ....|.+++|+|+ +.+|++.++.++|+||.+..... ........               .|..       
T Consensus       217 --------~~~~IySL~Fs~d-s~~L~~sS~TeTVHiFKL~~~~~-~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~  286 (391)
T KOG2110|consen  217 --------YPVSIYSLSFSPD-SQFLAASSNTETVHIFKLEKVSN-NPPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQ  286 (391)
T ss_pred             --------eeeEEEEEEECCC-CCeEEEecCCCeEEEEEeccccc-CCCCCCCCCCcccchhhhhhhhhcchhhhhhhhh
Confidence                    2457899999995 78999999999999999876441 11000000               0000       


Q ss_pred             cccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004468          264 VNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (751)
Q Consensus       264 ~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~  310 (751)
                      .+.|.-.++...++.  .+..+.-.+...++.+++.||.+|.|.+.-
T Consensus       287 ~R~FAt~~l~~s~~~--~~~~l~~~~~~~~v~vas~dG~~y~y~l~~  331 (391)
T KOG2110|consen  287 SRKFATAKLPESGRK--NICSLSSIQKIPRVLVASYDGHLYSYRLPP  331 (391)
T ss_pred             ccceeEEEccCCCcc--ceEEeeccCCCCEEEEEEcCCeEEEEEcCC
Confidence            011111122222221  244444345889999999999999998876

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.44  E-value=1.5e-13  Score=150.03  Aligned_cols=247  Identities=19%  Similarity=0.320  Sum_probs=182.6

Q ss_pred             ccccccchhhhccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCC
Q 004468           27 NHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETS  106 (751)
Q Consensus        27 ~~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~  106 (751)
                      +..+++|+  ..+..+...+.||.+.|+.++.+.+..++|++|.|..|++|.+.++.++..+ .||++.|++++|+|-  
T Consensus       211 d~lvKiwS--~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvL-rghtgavtaiafsP~--  285 (1113)
T KOG0644|consen  211 DRLVKIWS--METARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVL-RGHTGAVTAIAFSPR--  285 (1113)
T ss_pred             cceeeeee--ccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHH-hccccceeeeccCcc--
Confidence            56778888  6677789999999999999999999999999999999999999999999888 899999999999998  


Q ss_pred             CcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCC---
Q 004468          107 DELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSC---  183 (751)
Q Consensus       107 ~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~---  183 (751)
                          .+.+.||++++||.+-..-...    -.|.. + .-...|.++-|.. ++.-++|++.|+.-+.|.+..-..-   
T Consensus       286 ----~sss~dgt~~~wd~r~~~~~y~----prp~~-~-~~~~~~~s~~~~~-~~~~f~Tgs~d~ea~n~e~~~l~~~~~~  354 (1113)
T KOG0644|consen  286 ----ASSSDDGTCRIWDARLEPRIYV----PRPLK-F-TEKDLVDSILFEN-NGDRFLTGSRDGEARNHEFEQLAWRSNL  354 (1113)
T ss_pred             ----ccCCCCCceEeccccccccccC----CCCCC-c-ccccceeeeeccc-cccccccccCCcccccchhhHhhhhccc
Confidence                2778999999999982110000    01111 1 1234566676766 5567789999998887765432110   


Q ss_pred             -----------CCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCcc
Q 004468          184 -----------PPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLT  252 (751)
Q Consensus       184 -----------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~  252 (751)
                                 .........+...+|++..|..  +....+|...+..+.++|-+++...+++.||...|||+-.+.++.
T Consensus       355 lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l--~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik  432 (1113)
T KOG0644|consen  355 LIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQL--LHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIK  432 (1113)
T ss_pred             eEEEeccccccccceeeeeeeEeeeeecccchh--hhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcce
Confidence                       0001122334455666666543  233445778899999999999999999999999999998876543


Q ss_pred             ccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCC
Q 004468          253 SCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG  312 (751)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~  312 (751)
                      .+            +       .+|.  .+...+||+||..++..-.-|+++|+....+.
T Consensus       433 ~y------------~-------~gh~--kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~  471 (1113)
T KOG0644|consen  433 HY------------F-------IGHG--KLVDGKFSQDGTSIALSDDHGQLYILGTGQSK  471 (1113)
T ss_pred             ee------------e-------cccc--eeeccccCCCCceEecCCCCCceEEeccCCCc
Confidence            32            2       2232  36778999999999998888999999876643

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.44  E-value=8.6e-11  Score=126.27  Aligned_cols=196  Identities=14%  Similarity=0.142  Sum_probs=120.1

Q ss_pred             EEEEeCCCcEEEEeCCC-Ce--EEEEecccCCcceEEEEEecCCCCcEEEEE-ECCCcEEEEECCCCCCCCCCCCCCCCc
Q 004468           65 LISGSDDTHINVWSYSS-RK--LLHSIETGHSANVFCTKFVPETSDELVVSG-AGDAEVRLFNLSRFSGRGLDDNAITPS  140 (751)
Q Consensus        65 LaSgs~Dg~I~IWd~~~-~~--~~~~l~~~h~~~V~~v~fsp~s~~~~l~sg-s~Dg~V~vwd~~~~~~~~~~~~~~~~~  140 (751)
                      +++...|+.|.+|++.+ ++  .+..+  .+.+....+.++|+  +++|+.+ ..++.|.+|++.. .+..      ..+
T Consensus         5 y~~~~~~~~I~~~~~~~~g~l~~~~~~--~~~~~~~~l~~spd--~~~lyv~~~~~~~i~~~~~~~-~g~l------~~~   73 (330)
T PRK11028          5 YIASPESQQIHVWNLNHEGALTLLQVV--DVPGQVQPMVISPD--KRHLYVGVRPEFRVLSYRIAD-DGAL------TFA   73 (330)
T ss_pred             EEEcCCCCCEEEEEECCCCceeeeeEE--ecCCCCccEEECCC--CCEEEEEECCCCcEEEEEECC-CCce------EEe
Confidence            44557799999999964 33  34444  34567888999999  7777655 4588999999972 2211      112


Q ss_pred             eeecccCCceeEEEEecCCCCEEEEEe-CCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceE
Q 004468          141 ALYQCHTRRVKKLAVEVGNPHVVWSAS-EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLK  219 (751)
Q Consensus       141 ~~~~~h~~~V~~l~~sp~~~~~l~s~s-~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~  219 (751)
                      .... ..+.+..++|+|++ ++|++++ .++.|.+||+.+......          .+           ...+ ......
T Consensus        74 ~~~~-~~~~p~~i~~~~~g-~~l~v~~~~~~~v~v~~~~~~g~~~~----------~~-----------~~~~-~~~~~~  129 (330)
T PRK11028         74 AESP-LPGSPTHISTDHQG-RFLFSASYNANCVSVSPLDKDGIPVA----------PI-----------QIIE-GLEGCH  129 (330)
T ss_pred             eeec-CCCCceEEEECCCC-CEEEEEEcCCCeEEEEEECCCCCCCC----------ce-----------eecc-CCCccc
Confidence            2221 23356789999954 5555544 589999999974321100          00           0000 112356


Q ss_pred             EEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeC
Q 004468          220 SCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS  299 (751)
Q Consensus       220 ~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~  299 (751)
                      +++++|++..++++...++.|.+||+.+...+....        ....   ..    ........++|+|+|++|+++..
T Consensus       130 ~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~--------~~~~---~~----~~g~~p~~~~~~pdg~~lyv~~~  194 (330)
T PRK11028        130 SANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQE--------PAEV---TT----VEGAGPRHMVFHPNQQYAYCVNE  194 (330)
T ss_pred             EeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccC--------CCce---ec----CCCCCCceEEECCCCCEEEEEec
Confidence            788999643444566677999999997632211000        0000   00    00112567899999999988876


Q ss_pred             -CCcEEEEECCC
Q 004468          300 -GEHVYLMDVNH  310 (751)
Q Consensus       300 -d~~I~lwdl~~  310 (751)
                       ++.|.+|+++.
T Consensus       195 ~~~~v~v~~~~~  206 (330)
T PRK11028        195 LNSSVDVWQLKD  206 (330)
T ss_pred             CCCEEEEEEEeC
Confidence             89999999975

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.44  E-value=3.5e-12  Score=126.03  Aligned_cols=205  Identities=15%  Similarity=0.166  Sum_probs=153.0

Q ss_pred             cccccccchhhhcc-ccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeC-CCCe--EEEEecccCCcceEEEEE
Q 004468           26 VNHSLQMHSSLVRR-LSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSY-SSRK--LLHSIETGHSANVFCTKF  101 (751)
Q Consensus        26 ~~~~l~~~~~~i~~-~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~-~~~~--~~~~l~~~h~~~V~~v~f  101 (751)
                      -.+.+++++..-.. .++.++|+.|...|++|.|+|.++.|++|+.|..-.||.. ..++  +...+ ..|...+++|.|
T Consensus        30 ~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvL-lRiNrAAt~V~W  108 (361)
T KOG1523|consen   30 NNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVL-LRINRAATCVKW  108 (361)
T ss_pred             CCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccceeE-EEeccceeeEee
Confidence            34678888888777 7899999999999999999999999999999999999998 4443  34445 578999999999


Q ss_pred             ecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCC
Q 004468          102 VPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGS  181 (751)
Q Consensus       102 sp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~  181 (751)
                      +|.  ++.||+||.-..|.||-++....-      .-..+.-+.+...|.++.|+| ++-+++.|+.|+.+|+|..--..
T Consensus       109 sP~--enkFAVgSgar~isVcy~E~ENdW------WVsKhikkPirStv~sldWhp-nnVLlaaGs~D~k~rVfSayIK~  179 (361)
T KOG1523|consen  109 SPK--ENKFAVGSGARLISVCYYEQENDW------WVSKHIKKPIRSTVTSLDWHP-NNVLLAAGSTDGKCRVFSAYIKG  179 (361)
T ss_pred             cCc--CceEEeccCccEEEEEEEecccce------ehhhhhCCccccceeeeeccC-CcceecccccCcceeEEEEeeec
Confidence            999  799999999999999999853211      112334455788899999999 77899999999999999643211


Q ss_pred             CCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCC
Q 004468          182 SCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRML  248 (751)
Q Consensus       182 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~  248 (751)
                      .-       .......|+.+......+........++..+.|+|+ +..|+=.+.|..|.+-|....
T Consensus       180 Vd-------ekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~s-G~~lawv~Hds~v~~~da~~p  238 (361)
T KOG1523|consen  180 VD-------EKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPS-GNRLAWVGHDSTVSFVDAAGP  238 (361)
T ss_pred             cc-------cCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCC-CCEeeEecCCCceEEeecCCC
Confidence            00       000011122111111222333346678999999995 789999999999999887654

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.43  E-value=1.4e-12  Score=137.62  Aligned_cols=194  Identities=19%  Similarity=0.288  Sum_probs=142.9

Q ss_pred             ccccccccchh------hhccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCC------CC---eEEEEec
Q 004468           25 DVNHSLQMHSS------LVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYS------SR---KLLHSIE   89 (751)
Q Consensus        25 ~~~~~l~~~~~------~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~------~~---~~~~~l~   89 (751)
                      ..+..|++|.-      .-..++++.+|++|.++|.|++..+++..+.||+-||+|+.|++.      +.   ..+....
T Consensus       313 sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l  392 (577)
T KOG0642|consen  313 SEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTL  392 (577)
T ss_pred             ccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccce
Confidence            45667776654      344568899999999999999999999999999999999999543      11   1233333


Q ss_pred             ccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCC------------CCCC-------------------
Q 004468           90 TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDD------------NAIT-------------------  138 (751)
Q Consensus        90 ~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~------------~~~~-------------------  138 (751)
                      .||++.|+.+++++.  .+.|++|+.||+|++|+........+..            ...+                   
T Consensus       393 ~Ghtdavw~l~~s~~--~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~e  470 (577)
T KOG0642|consen  393 LGHTDAVWLLALSST--KDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDME  470 (577)
T ss_pred             eccccceeeeeeccc--ccceeeecCCceEEeeccCCcCccccCCccccCCcceEeeccchhHhhhhhcccccccchhhh
Confidence            899999999999998  5789999999999999987543311100            0000                   


Q ss_pred             ---Cceeecc-------cCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecc
Q 004468          139 ---PSALYQC-------HTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSL  208 (751)
Q Consensus       139 ---~~~~~~~-------h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  208 (751)
                         .+..+..       -...+..+.++|. ..+.+++.+|+.|+++|..++...                         
T Consensus       471 v~s~~~~~~s~~~~~~~~~~~in~vVs~~~-~~~~~~~hed~~Ir~~dn~~~~~l-------------------------  524 (577)
T KOG0642|consen  471 VVSDLLIFESSASPGPRRYPQINKVVSHPT-ADITFTAHEDRSIRFFDNKTGKIL-------------------------  524 (577)
T ss_pred             hhhheeeccccCCCcccccCccceEEecCC-CCeeEecccCCceecccccccccc-------------------------
Confidence               0001100       1234566777884 467779999999999999988643                         


Q ss_pred             cCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCC
Q 004468          209 ADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM  247 (751)
Q Consensus       209 ~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~  247 (751)
                      .....|...++++++.|+ +-+|++|+.|+.|++|.+..
T Consensus       525 ~s~~a~~~svtslai~~n-g~~l~s~s~d~sv~l~kld~  562 (577)
T KOG0642|consen  525 HSMVAHKDSVTSLAIDPN-GPYLMSGSHDGSVRLWKLDV  562 (577)
T ss_pred             hheeeccceecceeecCC-CceEEeecCCceeehhhccc
Confidence            222337788999999995 78999999999999998864

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.42  E-value=1.7e-11  Score=123.60  Aligned_cols=261  Identities=13%  Similarity=0.080  Sum_probs=172.4

Q ss_pred             hccc-cccEEecc-CCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecc-cCCcceEEEEEecCCCCcEEEEE
Q 004468           37 VRRL-SQERELEG-HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIET-GHSANVFCTKFVPETSDELVVSG  113 (751)
Q Consensus        37 i~~~-~~~~~L~g-H~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~-~h~~~V~~v~fsp~s~~~~l~sg  113 (751)
                      +.+. +++..... |...|.||+|+...+.|.||+.+++|++.|+++.+.+..+.. ...+.|+.+..+|.  ++.|++.
T Consensus        90 ~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~--DN~~~~~  167 (609)
T KOG4227|consen   90 VRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPT--DNTLIVV  167 (609)
T ss_pred             hhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCC--CceEEEE
Confidence            3444 56655543 448999999999999999999999999999999888877621 22358999999999  7999999


Q ss_pred             ECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCC----C
Q 004468          114 AGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGS----S  189 (751)
Q Consensus       114 s~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~----~  189 (751)
                      +.++.|.+||++..+...      .+ ............+.|+|..+.+|++.+..+-+-+||.|..........    .
T Consensus       168 t~~~~V~~~D~Rd~~~~~------~~-~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L  240 (609)
T KOG4227|consen  168 TRAKLVSFIDNRDRQNPI------SL-VLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGL  240 (609)
T ss_pred             ecCceEEEEeccCCCCCC------ce-eeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccC
Confidence            999999999998643211      22 222234455678899999999999999999999999998764311000    0


Q ss_pred             ---CCccc-------------------eEEEecccCceecccCCCC-----CccceEEEEEeCCCCcEEEEEeCCCeEEE
Q 004468          190 ---HQECR-------------------NILLDLRCGAKRSLADPPK-----QTLSLKSCDISSTRPHLLLVGGSDAFARL  242 (751)
Q Consensus       190 ---~~~~~-------------------~~l~~~~~~~~~~~~~~~~-----~~~~v~~i~~sp~~~~~l~sgs~D~~Iri  242 (751)
                         ..+.-                   .++++........+.....     ....+++|+|--+  +-+++|+.+-.|++
T Consensus       241 ~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D--~~v~tGSD~~~i~~  318 (609)
T KOG4227|consen  241 PQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDD--YTVATGSDHWGIHI  318 (609)
T ss_pred             cccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeecc--eeeeccCcccceEE
Confidence               00011                   1223332222221211111     1234677788753  56999999999999


Q ss_pred             EeCCCCCCccc---cCCCCCCCCccccccc-cccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004468          243 YDRRMLPPLTS---CQKRMSPPPCVNYFCP-MHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (751)
Q Consensus       243 wD~~~~~~~~~---~~~~~~~~~~~~~~~~-~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~  310 (751)
                      |.+.......-   +..... ......+.. .....+||.+ -++.|.|+|...+|++++-.+.++||.-..
T Consensus       319 WklP~~~ds~G~~~IG~~~~-~~~~~~~i~~~~~VLrGHRS-v~NQVRF~~H~~~l~SSGVE~~~KlWS~~r  388 (609)
T KOG4227|consen  319 WKLPRANDSYGFTQIGHDEE-EMPSEIFIEKELTVLRGHRS-VPNQVRFSQHNNLLVSSGVENSFKLWSDHR  388 (609)
T ss_pred             EecCCCccccCccccCcchh-hCchhheecceeEEEecccc-cccceeecCCcceEeccchhhheecccccc
Confidence            99864332211   111000 000011111 1122367877 489999999999999888899999997554

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.40  E-value=1.9e-11  Score=116.31  Aligned_cols=210  Identities=18%  Similarity=0.244  Sum_probs=144.7

Q ss_pred             ccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeE------EEEe-cccCC-----cceEEEEEecCCCCcE
Q 004468           42 QERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKL------LHSI-ETGHS-----ANVFCTKFVPETSDEL  109 (751)
Q Consensus        42 ~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~------~~~l-~~~h~-----~~V~~v~fsp~s~~~~  109 (751)
                      ++...++|.++|+.++|.  ..+|++|++ |.|+=|.......      +..+ ..-|.     -.|+++-..|..  +-
T Consensus        54 ~iv~eqahdgpiy~~~f~--d~~Lls~gd-G~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~e--nS  128 (325)
T KOG0649|consen   54 KIVPEQAHDGPIYYLAFH--DDFLLSGGD-GLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSE--NS  128 (325)
T ss_pred             ceeeccccCCCeeeeeee--hhheeeccC-ceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCC--Cc
Confidence            344558999999999998  457888865 9999997643211      1111 11222     458888888884  45


Q ss_pred             EEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCC
Q 004468          110 VVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSS  189 (751)
Q Consensus       110 l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~  189 (751)
                      |+.++.|+.++-||++++          +...++++|++.|.++.--..++ .++||++||++|+||+++++.......-
T Consensus       129 i~~AgGD~~~y~~dlE~G----------~i~r~~rGHtDYvH~vv~R~~~~-qilsG~EDGtvRvWd~kt~k~v~~ie~y  197 (325)
T KOG0649|consen  129 ILFAGGDGVIYQVDLEDG----------RIQREYRGHTDYVHSVVGRNANG-QILSGAEDGTVRVWDTKTQKHVSMIEPY  197 (325)
T ss_pred             EEEecCCeEEEEEEecCC----------EEEEEEcCCcceeeeeeecccCc-ceeecCCCccEEEEeccccceeEEeccc
Confidence            566669999999999975          55788999999999998744354 4559999999999999998754222111


Q ss_pred             CCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccc
Q 004468          190 HQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCP  269 (751)
Q Consensus       190 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~  269 (751)
                      ..               .-...|....+|.+++.+.   .++++|+ ...+.+|.++..++...++           +  
T Consensus       198 k~---------------~~~lRp~~g~wigala~~e---dWlvCGg-Gp~lslwhLrsse~t~vfp-----------i--  245 (325)
T KOG0649|consen  198 KN---------------PNLLRPDWGKWIGALAVNE---DWLVCGG-GPKLSLWHLRSSESTCVFP-----------I--  245 (325)
T ss_pred             cC---------------hhhcCcccCceeEEEeccC---ceEEecC-CCceeEEeccCCCceEEEe-----------c--
Confidence            00               0111222446788888875   4776654 5678999999876543321           1  


Q ss_pred             cccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004468          270 MHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (751)
Q Consensus       270 ~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~  310 (751)
                               ..++..+.|..|  .+++++..++|.-|-+..
T Consensus       246 ---------pa~v~~v~F~~d--~vl~~G~g~~v~~~~l~G  275 (325)
T KOG0649|consen  246 ---------PARVHLVDFVDD--CVLIGGEGNHVQSYTLNG  275 (325)
T ss_pred             ---------ccceeEeeeecc--eEEEeccccceeeeeecc
Confidence                     113666777544  588888888999998776

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.40  E-value=1.1e-11  Score=122.75  Aligned_cols=113  Identities=9%  Similarity=0.087  Sum_probs=90.3

Q ss_pred             EEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCC
Q 004468           55 AISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDD  134 (751)
Q Consensus        55 ~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~  134 (751)
                      -.+|||+|+++|+++.- .+.|=|.++-+..+.+  ..-..|.-+.|..++ -..|.....|+.|.+|++...       
T Consensus        13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf--~cldki~yieW~ads-~~ilC~~yk~~~vqvwsl~Qp-------   81 (447)
T KOG4497|consen   13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLF--LCLDKIVYIEWKADS-CHILCVAYKDPKVQVWSLVQP-------   81 (447)
T ss_pred             ceeECCCCCeeeeeeee-EEEEeccchhhHHHHH--HHHHHhhheeeeccc-eeeeeeeeccceEEEEEeecc-------
Confidence            35899999999999876 8888898876655444  124668888999885 455667788999999999965       


Q ss_pred             CCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCC
Q 004468          135 NAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGS  181 (751)
Q Consensus       135 ~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~  181 (751)
                         +-...+.+....+.+++|+|++.++|.+...|-.|.+|.+.+.+
T Consensus        82 ---ew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~  125 (447)
T KOG4497|consen   82 ---EWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQK  125 (447)
T ss_pred             ---eeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccce
Confidence               33456677788899999999776888889999999999998865

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.39  E-value=1.7e-10  Score=124.05  Aligned_cols=270  Identities=8%  Similarity=0.083  Sum_probs=162.1

Q ss_pred             ccccccchhh-hccccccEEeccCCCcEEEEEECCCCCEEEEEe-CCCcEEEEeCC-CCeE--EEEecccCCcceEEEEE
Q 004468           27 NHSLQMHSSL-VRRLSQERELEGHQGCVNAISWNSKGSLLISGS-DDTHINVWSYS-SRKL--LHSIETGHSANVFCTKF  101 (751)
Q Consensus        27 ~~~l~~~~~~-i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs-~Dg~I~IWd~~-~~~~--~~~l~~~h~~~V~~v~f  101 (751)
                      ++.+.+++.. -.+++.++++. +.+....+.++|++++|++++ .++.|.+|++. ++..  +...  ...+....+.|
T Consensus        11 ~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~--~~~~~p~~i~~   87 (330)
T PRK11028         11 SQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAES--PLPGSPTHIST   87 (330)
T ss_pred             CCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeee--cCCCCceEEEE
Confidence            3455555542 13555667665 346678899999999887664 58899999986 3432  2222  23345778999


Q ss_pred             ecCCCCcEEEEEE-CCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCC
Q 004468          102 VPETSDELVVSGA-GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQG  180 (751)
Q Consensus       102 sp~s~~~~l~sgs-~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~  180 (751)
                      +|+  +++|++++ .++.|.+|++... +...     +.+..+. +...+..++++|++..++++...++.|.+||+.+.
T Consensus        88 ~~~--g~~l~v~~~~~~~v~v~~~~~~-g~~~-----~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~  158 (330)
T PRK11028         88 DHQ--GRFLFSASYNANCVSVSPLDKD-GIPV-----APIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDD  158 (330)
T ss_pred             CCC--CCEEEEEEcCCCeEEEEEECCC-CCCC-----Cceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCC
Confidence            999  77777665 4899999999742 2110     1222222 23346778899955555567777899999999863


Q ss_pred             CCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeC-CCeEEEEeCCCCC-CccccCCCC
Q 004468          181 SSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGS-DAFARLYDRRMLP-PLTSCQKRM  258 (751)
Q Consensus       181 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~-D~~IriwD~~~~~-~~~~~~~~~  258 (751)
                      ..+....       ....          ....  ......+.|+|+ +++++++.. ++.|.+||+.... .+...+.  
T Consensus       159 g~l~~~~-------~~~~----------~~~~--g~~p~~~~~~pd-g~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~--  216 (330)
T PRK11028        159 GHLVAQE-------PAEV----------TTVE--GAGPRHMVFHPN-QQYAYCVNELNSSVDVWQLKDPHGEIECVQT--  216 (330)
T ss_pred             CcccccC-------CCce----------ecCC--CCCCceEEECCC-CCEEEEEecCCCEEEEEEEeCCCCCEEEEEE--
Confidence            3210000       0000          0000  123457899995 677766654 9999999997321 1110000  


Q ss_pred             CCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeC-CCcEEEEECCCCCcceeee---ecCCCceeEEeCCCCC
Q 004468          259 SPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GEHVYLMDVNHAGGRAMRY---TVGDASKIMSFTPTLN  334 (751)
Q Consensus       259 ~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~-d~~I~lwdl~~~~~~~~~~---~~~~~~~~~~~sp~~~  334 (751)
                           +.. .|....   +.. ....+.|+|+|++|+++.. ++.|.+|+++.........   ..+..+..+.++|+.+
T Consensus       217 -----~~~-~p~~~~---~~~-~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~  286 (330)
T PRK11028        217 -----LDM-MPADFS---DTR-WAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGK  286 (330)
T ss_pred             -----Eec-CCCcCC---CCc-cceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCC
Confidence                 000 011100   111 2456899999999999864 7899999997643222222   2234566788888877


Q ss_pred             CcccCC
Q 004468          335 GLELQP  340 (751)
Q Consensus       335 ~~~~~~  340 (751)
                      .+....
T Consensus       287 ~l~va~  292 (330)
T PRK11028        287 YLIAAG  292 (330)
T ss_pred             EEEEEE
Confidence            666543

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.35  E-value=1.4e-11  Score=130.65  Aligned_cols=215  Identities=14%  Similarity=0.177  Sum_probs=157.6

Q ss_pred             EEeccCCCcEEEEEECCCCCEEEEEeC---CCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEE
Q 004468           44 RELEGHQGCVNAISWNSKGSLLISGSD---DTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR  120 (751)
Q Consensus        44 ~~L~gH~~~V~~l~~s~dg~~LaSgs~---Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~  120 (751)
                      +..-.|...|+.|.|+..|.|||+...   ...|.|.++...+...-| .-..+.|.++.|+|..  .+|+.+. -..|+
T Consensus       515 ~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF-~kskG~vq~v~FHPs~--p~lfVaT-q~~vR  590 (733)
T KOG0650|consen  515 CIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPF-RKSKGLVQRVKFHPSK--PYLFVAT-QRSVR  590 (733)
T ss_pred             EEEEecCCccceeeeecCCceEEEeccCCCcceEEEEecccccccCch-hhcCCceeEEEecCCC--ceEEEEe-ccceE
Confidence            344458999999999999999998765   356889998877666666 4566889999999994  5666554 47899


Q ss_pred             EEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEec
Q 004468          121 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDL  200 (751)
Q Consensus       121 vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~  200 (751)
                      |||+...          +.++.+......|..++.+| +|.-|+.|+.|+.+..||+.-....                 
T Consensus       591 iYdL~kq----------elvKkL~tg~kwiS~msihp-~GDnli~gs~d~k~~WfDldlsskP-----------------  642 (733)
T KOG0650|consen  591 IYDLSKQ----------ELVKKLLTGSKWISSMSIHP-NGDNLILGSYDKKMCWFDLDLSSKP-----------------  642 (733)
T ss_pred             EEehhHH----------HHHHHHhcCCeeeeeeeecC-CCCeEEEecCCCeeEEEEcccCcch-----------------
Confidence            9999853          45666766778899999999 5667779999999999999876432                 


Q ss_pred             ccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCcccc
Q 004468          201 RCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSL  280 (751)
Q Consensus       201 ~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  280 (751)
                             ......|...+++++|++ .-.++++|+.|+++.||.-.-..-+..-  +  ..-.++.+ ++|...   ...
T Consensus       643 -------yk~lr~H~~avr~Va~H~-ryPLfas~sdDgtv~Vfhg~VY~Dl~qn--p--liVPlK~L-~gH~~~---~~~  706 (733)
T KOG0650|consen  643 -------YKTLRLHEKAVRSVAFHK-RYPLFASGSDDGTVIVFHGMVYNDLLQN--P--LIVPLKRL-RGHEKT---NDL  706 (733)
T ss_pred             -------hHHhhhhhhhhhhhhhcc-ccceeeeecCCCcEEEEeeeeehhhhcC--C--ceEeeeec-cCceee---ccc
Confidence                   222233778899999999 4789999999999999875432211000  0  00001111 122111   123


Q ss_pred             ceEEEEEcCCCCEEEEEeCCCcEEEE
Q 004468          281 HLTHVTFSPNGEEVLLSYSGEHVYLM  306 (751)
Q Consensus       281 ~vt~v~fspdg~~Ll~~s~d~~I~lw  306 (751)
                      .|..+.|+|...+|++++.||+|+||
T Consensus       707 gVLd~~wHP~qpWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  707 GVLDTIWHPRQPWLFSAGADGTIRLF  732 (733)
T ss_pred             ceEeecccCCCceEEecCCCceEEee
Confidence            58899999999999999999999998

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.35  E-value=8.6e-12  Score=130.45  Aligned_cols=206  Identities=14%  Similarity=0.186  Sum_probs=147.5

Q ss_pred             CEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCcee
Q 004468           63 SLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSAL  142 (751)
Q Consensus        63 ~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~  142 (751)
                      ..|+.++.||.+.|.+ +.++....+ ..|.+.|.|-.|+|+  |.-|+|++.||.|++|.-..           ....+
T Consensus        76 d~~~i~s~DGkf~il~-k~~rVE~sv-~AH~~A~~~gRW~~d--GtgLlt~GEDG~iKiWSrsG-----------MLRSt  140 (737)
T KOG1524|consen   76 DTLLICSNDGRFVILN-KSARVERSI-SAHAAAISSGRWSPD--GAGLLTAGEDGVIKIWSRSG-----------MLRST  140 (737)
T ss_pred             ceEEEEcCCceEEEec-ccchhhhhh-hhhhhhhhhcccCCC--CceeeeecCCceEEEEeccc-----------hHHHH
Confidence            4788999999999988 456666667 799999999999999  89999999999999998763           33445


Q ss_pred             ecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEE
Q 004468          143 YQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCD  222 (751)
Q Consensus       143 ~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~  222 (751)
                      +.....+|+|++|.|+...++.+.+.  .+.|=-+.....            .+-|             ..|.+-|-+++
T Consensus       141 l~Q~~~~v~c~~W~p~S~~vl~c~g~--h~~IKpL~~n~k------------~i~W-------------kAHDGiiL~~~  193 (737)
T KOG1524|consen  141 VVQNEESIRCARWAPNSNSIVFCQGG--HISIKPLAANSK------------IIRW-------------RAHDGLVLSLS  193 (737)
T ss_pred             HhhcCceeEEEEECCCCCceEEecCC--eEEEeecccccc------------eeEE-------------eccCcEEEEee
Confidence            55677899999999976666655543  444433322211            1112             23677899999


Q ss_pred             EeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCc
Q 004468          223 ISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEH  302 (751)
Q Consensus       223 ~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~  302 (751)
                      |+|. .+++++|+.|-..+|||..-.....                      .....++||+++|.|+ +.+++++. ++
T Consensus       194 W~~~-s~lI~sgGED~kfKvWD~~G~~Lf~----------------------S~~~ey~ITSva~npd-~~~~v~S~-nt  248 (737)
T KOG1524|consen  194 WSTQ-SNIIASGGEDFRFKIWDAQGANLFT----------------------SAAEEYAITSVAFNPE-KDYLLWSY-NT  248 (737)
T ss_pred             cCcc-ccceeecCCceeEEeecccCccccc----------------------CChhccceeeeeeccc-cceeeeee-ee
Confidence            9996 7999999999999999976322111                      1123457999999999 54555543 34


Q ss_pred             EEEEECCCCCcceeeeecCCCceeEEeCCCCCCcccCCCccccc
Q 004468          303 VYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPIHDFL  346 (751)
Q Consensus       303 I~lwdl~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~  346 (751)
                      +++=..+           .+.+-.++|+|++..++.....+...
T Consensus       249 ~R~~~p~-----------~GSifnlsWS~DGTQ~a~gt~~G~v~  281 (737)
T KOG1524|consen  249 ARFSSPR-----------VGSIFNLSWSADGTQATCGTSTGQLI  281 (737)
T ss_pred             eeecCCC-----------ccceEEEEEcCCCceeeccccCceEE
Confidence            4432222           23566788999998888777666544

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.33  E-value=2.1e-11  Score=125.09  Aligned_cols=188  Identities=15%  Similarity=0.147  Sum_probs=130.2

Q ss_pred             EEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEe
Q 004468           97 FCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHD  176 (751)
Q Consensus        97 ~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwD  176 (751)
                      -+++|+++  |..|++|+.||++|||+....          .++.....|...|.++.|+| ++.+|++-+.| ..++|+
T Consensus       148 k~vaf~~~--gs~latgg~dg~lRv~~~Ps~----------~t~l~e~~~~~eV~DL~FS~-dgk~lasig~d-~~~VW~  213 (398)
T KOG0771|consen  148 KVVAFNGD--GSKLATGGTDGTLRVWEWPSM----------LTILEEIAHHAEVKDLDFSP-DGKFLASIGAD-SARVWS  213 (398)
T ss_pred             eEEEEcCC--CCEeeeccccceEEEEecCcc----------hhhhhhHhhcCccccceeCC-CCcEEEEecCC-ceEEEE
Confidence            57899998  899999999999999996643          44667778999999999999 77999999999 999999


Q ss_pred             cCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCC---C-cEEEEEeCCCeEEEEeCCCCCCcc
Q 004468          177 FRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR---P-HLLLVGGSDAFARLYDRRMLPPLT  252 (751)
Q Consensus       177 lr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~---~-~~l~sgs~D~~IriwD~~~~~~~~  252 (751)
                      ++++.......                       +.........|.|+.++   . ++++.-..-+.|+.||+...+.-.
T Consensus       214 ~~~g~~~a~~t-----------------------~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~  270 (398)
T KOG0771|consen  214 VNTGAALARKT-----------------------PFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSN  270 (398)
T ss_pred             eccCchhhhcC-----------------------CcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeecccc
Confidence            99985432111                       01122344556666632   1 233333445677777765433211


Q ss_pred             ccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccee-eeecCCCceeEEeCC
Q 004468          253 SCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAM-RYTVGDASKIMSFTP  331 (751)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~-~~~~~~~~~~~~~sp  331 (751)
                      .+          +    .......+.  .|++++.|+||++++.|+.||.|-|++..+.+.... ...|...+..+.|+|
T Consensus       271 ~l----------~----~~~~~~~~~--siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~P  334 (398)
T KOG0771|consen  271 FL----------R----LRKKIKRFK--SISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSP  334 (398)
T ss_pred             cc----------c----hhhhhhccC--cceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcC
Confidence            10          0    000111222  499999999999999999999999999988542222 223456788899999


Q ss_pred             CCCCcc
Q 004468          332 TLNGLE  337 (751)
Q Consensus       332 ~~~~~~  337 (751)
                      +.+...
T Consensus       335 dsr~~~  340 (398)
T KOG0771|consen  335 DSRYLA  340 (398)
T ss_pred             CcCccc
Confidence            876554

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.33  E-value=3.7e-10  Score=125.34  Aligned_cols=221  Identities=11%  Similarity=0.085  Sum_probs=135.4

Q ss_pred             EEeccCCCcEEEEEECCCCCEEEEEe---CCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEE-EECCC--
Q 004468           44 RELEGHQGCVNAISWNSKGSLLISGS---DDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVS-GAGDA--  117 (751)
Q Consensus        44 ~~L~gH~~~V~~l~~s~dg~~LaSgs---~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~s-gs~Dg--  117 (751)
                      +.+..+.+.+...+|||||+.||..+   .+..|.+|++.+++... + ....+.+..++|+|+  |+.|+. .+.++  
T Consensus       192 ~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l-~~~~~~~~~~~~SPD--G~~La~~~~~~g~~  267 (429)
T PRK03629        192 FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-V-ASFPRHNGAPAFSPD--GSKLAFALSKTGSL  267 (429)
T ss_pred             EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-c-cCCCCCcCCeEECCC--CCEEEEEEcCCCCc
Confidence            44555677899999999999998764   34579999998775432 2 223344567899999  776664 44455  


Q ss_pred             cEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeC-CCcEEEE--ecCCCCCCCCCCCCCCccc
Q 004468          118 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASE-DGTLRQH--DFRQGSSCPPAGSSHQECR  194 (751)
Q Consensus       118 ~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~-Dg~I~iw--Dlr~~~~~~~~~~~~~~~~  194 (751)
                      .|.+||+..+.           ...+..+...+....|+| +++.|+..+. +|...+|  |+.++..            
T Consensus       268 ~I~~~d~~tg~-----------~~~lt~~~~~~~~~~wSP-DG~~I~f~s~~~g~~~Iy~~d~~~g~~------------  323 (429)
T PRK03629        268 NLYVMDLASGQ-----------IRQVTDGRSNNTEPTWFP-DSQNLAYTSDQAGRPQVYKVNINGGAP------------  323 (429)
T ss_pred             EEEEEECCCCC-----------EEEccCCCCCcCceEECC-CCCEEEEEeCCCCCceEEEEECCCCCe------------
Confidence            48888987532           233444455678899999 5565555554 4555555  4444321            


Q ss_pred             eEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCC---CeEEEEeCCCCCCccccCCCCCCCCccccccccc
Q 004468          195 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD---AFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMH  271 (751)
Q Consensus       195 ~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D---~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (751)
                      ..           +..   .........|+|+ +++|+..+.+   ..|.+||+.++... .             +..  
T Consensus       324 ~~-----------lt~---~~~~~~~~~~SpD-G~~Ia~~~~~~g~~~I~~~dl~~g~~~-~-------------Lt~--  372 (429)
T PRK03629        324 QR-----------ITW---EGSQNQDADVSSD-GKFMVMVSSNGGQQHIAKQDLATGGVQ-V-------------LTD--  372 (429)
T ss_pred             EE-----------eec---CCCCccCEEECCC-CCEEEEEEccCCCceEEEEECCCCCeE-E-------------eCC--
Confidence            00           100   1122446789995 6776665543   35888898765321 0             100  


Q ss_pred             cccCCccccceEEEEEcCCCCEEEEEeCCC---cEEEEECCCCCcceeeeecCCCceeEEeCC
Q 004468          272 LSEHGRSSLHLTHVTFSPNGEEVLLSYSGE---HVYLMDVNHAGGRAMRYTVGDASKIMSFTP  331 (751)
Q Consensus       272 ~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~---~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp  331 (751)
                          ..   ......|+|||++|+.++.++   .+++++++... ......+.......+|+|
T Consensus       373 ----~~---~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~-~~~l~~~~~~~~~p~Wsp  427 (429)
T PRK03629        373 ----TF---LDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRF-KARLPATDGQVKFPAWSP  427 (429)
T ss_pred             ----CC---CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCC-eEECccCCCCcCCcccCC
Confidence                00   123567999999999988765   37888886533 333333344455566665

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.31  E-value=2.1e-10  Score=127.85  Aligned_cols=204  Identities=13%  Similarity=0.104  Sum_probs=131.1

Q ss_pred             ccEEeccCCCcEEEEEECCCCCEEEEEeCC---CcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEE-EEEECCC
Q 004468           42 QERELEGHQGCVNAISWNSKGSLLISGSDD---THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELV-VSGAGDA  117 (751)
Q Consensus        42 ~~~~L~gH~~~V~~l~~s~dg~~LaSgs~D---g~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l-~sgs~Dg  117 (751)
                      ..+.|..|...|...+|+|||+.|+..+.+   ..|.+||+.+++... + ..+.+...+.+|+|+  |+.| ++.+.++
T Consensus       195 ~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l-~~~~g~~~~~~~SpD--G~~l~~~~s~~g  270 (433)
T PRK04922        195 NPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-V-ASFRGINGAPSFSPD--GRRLALTLSRDG  270 (433)
T ss_pred             CceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-e-ccCCCCccCceECCC--CCEEEEEEeCCC
Confidence            345667788889999999999999988743   469999998776533 3 344555668899999  6655 4666666


Q ss_pred             --cEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEe-CCCc--EEEEecCCCCCCCCCCCCCCc
Q 004468          118 --EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSAS-EDGT--LRQHDFRQGSSCPPAGSSHQE  192 (751)
Q Consensus       118 --~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s-~Dg~--I~iwDlr~~~~~~~~~~~~~~  192 (751)
                        .|++||+..+.           ...+..+.......+|+|+ ++.|+.++ .+|.  |.++|+.+++..         
T Consensus       271 ~~~Iy~~d~~~g~-----------~~~lt~~~~~~~~~~~spD-G~~l~f~sd~~g~~~iy~~dl~~g~~~---------  329 (433)
T PRK04922        271 NPEIYVMDLGSRQ-----------LTRLTNHFGIDTEPTWAPD-GKSIYFTSDRGGRPQIYRVAASGGSAE---------  329 (433)
T ss_pred             CceEEEEECCCCC-----------eEECccCCCCccceEECCC-CCEEEEEECCCCCceEEEEECCCCCeE---------
Confidence              58899987532           3344455555678899994 56555544 4555  555565544310         


Q ss_pred             cceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCC---eEEEEeCCCCCCccccCCCCCCCCccccccc
Q 004468          193 CRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDA---FARLYDRRMLPPLTSCQKRMSPPPCVNYFCP  269 (751)
Q Consensus       193 ~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~---~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~  269 (751)
                                    .+..   ........+|+|+ +++|+..+.++   .|.+||+.+.+.. .             +. 
T Consensus       330 --------------~lt~---~g~~~~~~~~SpD-G~~Ia~~~~~~~~~~I~v~d~~~g~~~-~-------------Lt-  376 (433)
T PRK04922        330 --------------RLTF---QGNYNARASVSPD-GKKIAMVHGSGGQYRIAVMDLSTGSVR-T-------------LT-  376 (433)
T ss_pred             --------------Eeec---CCCCccCEEECCC-CCEEEEEECCCCceeEEEEECCCCCeE-E-------------CC-
Confidence                          0110   1112345799995 67776654432   6999998765421 1             10 


Q ss_pred             cccccCCccccceEEEEEcCCCCEEEEEeC---CCcEEEEECCCC
Q 004468          270 MHLSEHGRSSLHLTHVTFSPNGEEVLLSYS---GEHVYLMDVNHA  311 (751)
Q Consensus       270 ~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~---d~~I~lwdl~~~  311 (751)
                           .+.   ......|+|||++|+..+.   ...|+++++...
T Consensus       377 -----~~~---~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~  413 (433)
T PRK04922        377 -----PGS---LDESPSFAPNGSMVLYATREGGRGVLAAVSTDGR  413 (433)
T ss_pred             -----CCC---CCCCceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence                 011   1345689999999887765   346888888653

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.31  E-value=2.4e-10  Score=114.73  Aligned_cols=228  Identities=16%  Similarity=0.224  Sum_probs=144.7

Q ss_pred             eccCCCcEEEEEECCCCCEEEEEe-CCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEEC
Q 004468           46 LEGHQGCVNAISWNSKGSLLISGS-DDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNL  124 (751)
Q Consensus        46 L~gH~~~V~~l~~s~dg~~LaSgs-~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~  124 (751)
                      ..|| ..|+.|+|++||..|++++ .|..|+|||+.++..+.-. .-..+.+.-++|+|+  +.+|+.+.-|+..+||+.
T Consensus       192 ~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~-~~glgg~slLkwSPd--gd~lfaAt~davfrlw~e  267 (445)
T KOG2139|consen  192 DPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLI-PKGLGGFSLLKWSPD--GDVLFAATCDAVFRLWQE  267 (445)
T ss_pred             CCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccccc-ccCCCceeeEEEcCC--CCEEEEecccceeeeehh
Confidence            3566 6899999999999999998 5778999999998876655 344577999999999  899999999999999976


Q ss_pred             CCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCC-CCCCccceEEEecccC
Q 004468          125 SRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAG-SSHQECRNILLDLRCG  203 (751)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~-~~~~~~~~~l~~~~~~  203 (751)
                      ...          ........-.++|...+|+|.+..+|.+++..-.  +|.+.-...+.... .........+.++..-
T Consensus       268 ~q~----------wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~--lysl~f~~~~~~~~~~~~~k~~lliaDL~e~  335 (445)
T KOG2139|consen  268 NQS----------WTKERWILGSGRVQTACWSPCGSFLLFACSGSPR--LYSLTFDGEDSVFLRPQSIKRVLLIADLQEV  335 (445)
T ss_pred             ccc----------ceecceeccCCceeeeeecCCCCEEEEEEcCCce--EEEEeecCCCccccCcccceeeeeeccchhh
Confidence            532          1112223345699999999977777777765554  44444333222111 1111111222222210


Q ss_pred             ceecccCCCCCccceEEEEEeCCCCcEEEEEeCCC--------eEEEEeCCCCCCccccCCCCCCCCccccccccccccC
Q 004468          204 AKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDA--------FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEH  275 (751)
Q Consensus       204 ~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~--------~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (751)
                      .  .......-..++.+++|.|. +.+|++.-..+        .|-+||.+...++...            ++....   
T Consensus       336 t--i~ag~~l~cgeaq~lawDps-GeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels------------~cg~i~---  397 (445)
T KOG2139|consen  336 T--ICAGQRLCCGEAQCLAWDPS-GEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELS------------YCGMIG---  397 (445)
T ss_pred             h--hhcCcccccCccceeeECCC-CCEEEEEEcCCchhhhhhhhhhhhcccccCceEEE------------eccccc---
Confidence            0  00001112457889999995 78888876543        4677887765433211            111110   


Q ss_pred             CccccceEEEEEcC---CCCEEEEEeCCCcEEEEECCC
Q 004468          276 GRSSLHLTHVTFSP---NGEEVLLSYSGEHVYLMDVNH  310 (751)
Q Consensus       276 g~~~~~vt~v~fsp---dg~~Ll~~s~d~~I~lwdl~~  310 (751)
                      +.   +...++|+|   +|..|.++-+-|.|.-|++.-
T Consensus       398 ge---~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~f  432 (445)
T KOG2139|consen  398 GE---YPAYISFGPLKNEGRLLSIAWSTGRIQRYPLTF  432 (445)
T ss_pred             CC---CCceEEeeecccCCcEEEEEeccCceEeeeeEE
Confidence            11   134566666   677888888889888887654

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.30  E-value=3.8e-10  Score=125.90  Aligned_cols=205  Identities=11%  Similarity=0.065  Sum_probs=133.8

Q ss_pred             ccEEeccCCCcEEEEEECCCCCEEEEEeC---CCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEE-EEEECCC
Q 004468           42 QERELEGHQGCVNAISWNSKGSLLISGSD---DTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELV-VSGAGDA  117 (751)
Q Consensus        42 ~~~~L~gH~~~V~~l~~s~dg~~LaSgs~---Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l-~sgs~Dg  117 (751)
                      ..+.|..|.+.|.+.+|+|||+.||..+.   +..|.+||+.++... .+ ..+.+.+...+|+|+  |+.| ++.+.++
T Consensus       193 ~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l-~~~~g~~~~~~~SPD--G~~la~~~~~~g  268 (435)
T PRK05137        193 NVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LV-GNFPGMTFAPRFSPD--GRKVVMSLSQGG  268 (435)
T ss_pred             CcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-Ee-ecCCCcccCcEECCC--CCEEEEEEecCC
Confidence            34567788899999999999999998764   468999999887653 34 456777889999999  6655 4666666


Q ss_pred             c--EEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEe-CCC--cEEEEecCCCCCCCCCCCCCCc
Q 004468          118 E--VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSAS-EDG--TLRQHDFRQGSSCPPAGSSHQE  192 (751)
Q Consensus       118 ~--V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s-~Dg--~I~iwDlr~~~~~~~~~~~~~~  192 (751)
                      .  |.+||+..+           ....+..+........|+|+ ++.|+..+ .+|  .|.++|+..+...         
T Consensus       269 ~~~Iy~~d~~~~-----------~~~~Lt~~~~~~~~~~~spD-G~~i~f~s~~~g~~~Iy~~d~~g~~~~---------  327 (435)
T PRK05137        269 NTDIYTMDLRSG-----------TTTRLTDSPAIDTSPSYSPD-GSQIVFESDRSGSPQLYVMNADGSNPR---------  327 (435)
T ss_pred             CceEEEEECCCC-----------ceEEccCCCCccCceeEcCC-CCEEEEEECCCCCCeEEEEECCCCCeE---------
Confidence            5  666677653           13445556666778999994 56555554 444  5667776554311         


Q ss_pred             cceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCC---CeEEEEeCCCCCCccccCCCCCCCCccccccc
Q 004468          193 CRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD---AFARLYDRRMLPPLTSCQKRMSPPPCVNYFCP  269 (751)
Q Consensus       193 ~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D---~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~  269 (751)
                                    .+..   ....+....|+|+ +++|+....+   ..|.+||+..... .             .+. 
T Consensus       328 --------------~lt~---~~~~~~~~~~Spd-G~~ia~~~~~~~~~~i~~~d~~~~~~-~-------------~lt-  374 (435)
T PRK05137        328 --------------RISF---GGGRYSTPVWSPR-GDLIAFTKQGGGQFSIGVMKPDGSGE-R-------------ILT-  374 (435)
T ss_pred             --------------Eeec---CCCcccCeEECCC-CCEEEEEEcCCCceEEEEEECCCCce-E-------------ecc-
Confidence                          0111   1123456789995 6777665543   3677888753321 1             010 


Q ss_pred             cccccCCccccceEEEEEcCCCCEEEEEeCC------CcEEEEECCCCC
Q 004468          270 MHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG------EHVYLMDVNHAG  312 (751)
Q Consensus       270 ~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d------~~I~lwdl~~~~  312 (751)
                           .+.   .+..+.|+|||+.|+..+.+      ..++++|+..+.
T Consensus       375 -----~~~---~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~  415 (435)
T PRK05137        375 -----SGF---LVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRN  415 (435)
T ss_pred             -----CCC---CCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCc
Confidence                 011   25568899999998776542      368888987754

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.29  E-value=3.7e-10  Score=125.41  Aligned_cols=227  Identities=10%  Similarity=0.062  Sum_probs=139.4

Q ss_pred             cEEeccCCCcEEEEEECCCCCEEEEEeCC---CcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEE-EEECCCc
Q 004468           43 ERELEGHQGCVNAISWNSKGSLLISGSDD---THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVV-SGAGDAE  118 (751)
Q Consensus        43 ~~~L~gH~~~V~~l~~s~dg~~LaSgs~D---g~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~-sgs~Dg~  118 (751)
                      .+.+..+.+.|.+.+|+|||+.||..+.+   ..|.+||+.+++... + ....+.+.+.+|+|+  |+.|+ +.+.++.
T Consensus       188 ~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l-~~~~g~~~~~~~SPD--G~~la~~~~~~g~  263 (427)
T PRK02889        188 AQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-V-ANFKGSNSAPAWSPD--GRTLAVALSRDGN  263 (427)
T ss_pred             ceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-e-ecCCCCccceEECCC--CCEEEEEEccCCC
Confidence            34566788899999999999999987743   359999998886543 3 334456778999999  66665 6788888


Q ss_pred             EEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEE-EEeCCCcEEEEecCCCCCCCCCCCCCCccceEE
Q 004468          119 VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVW-SASEDGTLRQHDFRQGSSCPPAGSSHQECRNIL  197 (751)
Q Consensus       119 V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~-s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l  197 (751)
                      ..||.+....         .....+..+...+....|+|+ ++.|+ ++..+|...+|.+......          ... 
T Consensus       264 ~~Iy~~d~~~---------~~~~~lt~~~~~~~~~~wSpD-G~~l~f~s~~~g~~~Iy~~~~~~g~----------~~~-  322 (427)
T PRK02889        264 SQIYTVNADG---------SGLRRLTQSSGIDTEPFFSPD-GRSIYFTSDRGGAPQIYRMPASGGA----------AQR-  322 (427)
T ss_pred             ceEEEEECCC---------CCcEECCCCCCCCcCeEEcCC-CCEEEEEecCCCCcEEEEEECCCCc----------eEE-
Confidence            7777765322         123445555566677899995 45544 4444567777765422100          000 


Q ss_pred             EecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCC---eEEEEeCCCCCCccccCCCCCCCCcccccccccccc
Q 004468          198 LDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDA---FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSE  274 (751)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~---~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (751)
                                +...   .......+|+|+ +++|+..+.++   .|.+||+...+...              +.      
T Consensus       323 ----------lt~~---g~~~~~~~~SpD-G~~Ia~~s~~~g~~~I~v~d~~~g~~~~--------------lt------  368 (427)
T PRK02889        323 ----------VTFT---GSYNTSPRISPD-GKLLAYISRVGGAFKLYVQDLATGQVTA--------------LT------  368 (427)
T ss_pred             ----------EecC---CCCcCceEECCC-CCEEEEEEccCCcEEEEEEECCCCCeEE--------------cc------
Confidence                      1000   112235689995 67777666554   69999987654211              00      


Q ss_pred             CCccccceEEEEEcCCCCEEEEEeCCC---cEEEEECCCCCcceeeeecCCCceeEEeCCC
Q 004468          275 HGRSSLHLTHVTFSPNGEEVLLSYSGE---HVYLMDVNHAGGRAMRYTVGDASKIMSFTPT  332 (751)
Q Consensus       275 ~g~~~~~vt~v~fspdg~~Ll~~s~d~---~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp~  332 (751)
                      .+.   ......|+|||++|+..+.++   .+++.++.. ................+|+|.
T Consensus       369 ~~~---~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~g-~~~~~l~~~~g~~~~p~wsp~  425 (427)
T PRK02889        369 DTT---RDESPSFAPNGRYILYATQQGGRSVLAAVSSDG-RIKQRLSVQGGDVREPSWGPF  425 (427)
T ss_pred             CCC---CccCceECCCCCEEEEEEecCCCEEEEEEECCC-CceEEeecCCCCCCCCccCCC
Confidence            000   134678999999998877643   466777744 322222223344455566653

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.26  E-value=2.4e-10  Score=116.10  Aligned_cols=227  Identities=11%  Similarity=0.142  Sum_probs=156.9

Q ss_pred             EeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCe----EEEEecccCCcceEEEEEecCCCCcEEEEEECC--Cc
Q 004468           45 ELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK----LLHSIETGHSANVFCTKFVPETSDELVVSGAGD--AE  118 (751)
Q Consensus        45 ~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~----~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~D--g~  118 (751)
                      +..+-++.|-.++.. || .|++|-.+|.+.+|..+.+.    .+..+  .-...+..+.-+|.. ..++++|+..  ..
T Consensus       100 ~~~l~~~~I~gl~~~-dg-~Litc~~sG~l~~~~~k~~d~hss~l~~l--a~g~g~~~~r~~~~~-p~Iva~GGke~~n~  174 (412)
T KOG3881|consen  100 TVSLGTKSIKGLKLA-DG-TLITCVSSGNLQVRHDKSGDLHSSKLIKL--ATGPGLYDVRQTDTD-PYIVATGGKENINE  174 (412)
T ss_pred             ccccccccccchhhc-CC-EEEEEecCCcEEEEeccCCccccccceee--ecCCceeeeccCCCC-CceEecCchhcccc
Confidence            344445555555544 33 67888899999999988432    23333  223567788888774 5677789998  88


Q ss_pred             EEEEECCCCCCCCCCCCCCCCceeeccc-----------CCceeEEEEecCC-CCEEEEEeCCCcEEEEecCCCCCCCCC
Q 004468          119 VRLFNLSRFSGRGLDDNAITPSALYQCH-----------TRRVKKLAVEVGN-PHVVWSASEDGTLRQHDFRQGSSCPPA  186 (751)
Q Consensus       119 V~vwd~~~~~~~~~~~~~~~~~~~~~~h-----------~~~V~~l~~sp~~-~~~l~s~s~Dg~I~iwDlr~~~~~~~~  186 (751)
                      ++|||+...            .+.+.+-           .-.++++.|-+.. ...|++++.-+.+|+||++.+..+   
T Consensus       175 lkiwdle~~------------~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRP---  239 (412)
T KOG3881|consen  175 LKIWDLEQS------------KQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRP---  239 (412)
T ss_pred             eeeeecccc------------eeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcc---
Confidence            999999964            2222221           2346788888721 678999999999999999976633   


Q ss_pred             CCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCcccc
Q 004468          187 GSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNY  266 (751)
Q Consensus       187 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~  266 (751)
                                           +..++-....++++...| +++.|++|..-+.+..||+|.++.....            
T Consensus       240 ---------------------V~~fd~~E~~is~~~l~p-~gn~Iy~gn~~g~l~~FD~r~~kl~g~~------------  285 (412)
T KOG3881|consen  240 ---------------------VAQFDFLENPISSTGLTP-SGNFIYTGNTKGQLAKFDLRGGKLLGCG------------  285 (412)
T ss_pred             ---------------------eeEeccccCcceeeeecC-CCcEEEEecccchhheecccCceeeccc------------
Confidence                                 122222456899999999 5899999999999999999987643210            


Q ss_pred             ccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcceeeeecCCCceeEEeCCCCC
Q 004468          267 FCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLN  334 (751)
Q Consensus       267 ~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp~~~  334 (751)
                      +       .|- .+.|++|..+|.+++|++++-|..|+|+|+.+.+.....|. ....+.+-+.+..+
T Consensus       286 ~-------kg~-tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYv-Ks~lt~il~~~~~n  344 (412)
T KOG3881|consen  286 L-------KGI-TGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYV-KSRLTFILLRDDVN  344 (412)
T ss_pred             c-------CCc-cCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhh-hccccEEEecCCcc
Confidence            0       122 23699999999999999999999999999999544333333 33334444444433

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.25  E-value=3.5e-10  Score=113.59  Aligned_cols=207  Identities=18%  Similarity=0.224  Sum_probs=142.5

Q ss_pred             CCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCC
Q 004468           50 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSG  129 (751)
Q Consensus        50 ~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~  129 (751)
                      +-++..++|++.-..+|++..|-.|+|||-.. +....++..-..+|.|++|-|.+ +.-|+.|+. +-|++|.......
T Consensus        98 ~~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPls-aselavgCr-~gIciW~~s~tln  174 (445)
T KOG2139|consen   98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLS-ASELAVGCR-AGICIWSDSRTLN  174 (445)
T ss_pred             hcceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCC-cceeeeeec-ceeEEEEcCcccc
Confidence            35788899999888899999999999999765 55556645567899999999997 677777776 4589998875211


Q ss_pred             --CCCCCCCCCC--ceeecccCCceeEEEEecCCCCEEEEEeC-CCcEEEEecCCCCCCCCCCCCCCccceEEEecccCc
Q 004468          130 --RGLDDNAITP--SALYQCHTRRVKKLAVEVGNPHVVWSASE-DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGA  204 (751)
Q Consensus       130 --~~~~~~~~~~--~~~~~~h~~~V~~l~~sp~~~~~l~s~s~-Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~  204 (751)
                        +........+  +....+| .+|+++.|.+ ++..+++++. |..|+|||..++...+.                   
T Consensus       175 ~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~-dgt~l~tAS~gsssi~iWdpdtg~~~pL-------------------  233 (445)
T KOG2139|consen  175 ANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNE-DGTILVTASFGSSSIMIWDPDTGQKIPL-------------------  233 (445)
T ss_pred             cccccccccccchhheeCCCC-ceeeEEEEcC-CCCEEeecccCcceEEEEcCCCCCcccc-------------------
Confidence              1100011112  2223445 7899999999 5677778774 67899999999874321                   


Q ss_pred             eecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCC-CCCCccccCCCCCCCCccccccccccccCCccccceE
Q 004468          205 KRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRR-MLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLT  283 (751)
Q Consensus       205 ~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt  283 (751)
                            .+.....+.-+.|+| ++.+|.++.-|+..++|... +-...             +    ..+     ..+.|.
T Consensus       234 ------~~~glgg~slLkwSP-dgd~lfaAt~davfrlw~e~q~wt~e-------------r----w~l-----gsgrvq  284 (445)
T KOG2139|consen  234 ------IPKGLGGFSLLKWSP-DGDVLFAATCDAVFRLWQENQSWTKE-------------R----WIL-----GSGRVQ  284 (445)
T ss_pred             ------cccCCCceeeEEEcC-CCCEEEEecccceeeeehhcccceec-------------c----eec-----cCCcee
Confidence                  122345678899999 48999999999999999543 22110             0    000     112589


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004468          284 HVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (751)
Q Consensus       284 ~v~fspdg~~Ll~~s~d~~I~lwdl~~  310 (751)
                      ...|+|+|++|+..... .-+||.+.-
T Consensus       285 tacWspcGsfLLf~~sg-sp~lysl~f  310 (445)
T KOG2139|consen  285 TACWSPCGSFLLFACSG-SPRLYSLTF  310 (445)
T ss_pred             eeeecCCCCEEEEEEcC-CceEEEEee
Confidence            99999999988766543 233444433

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.25  E-value=1.2e-10  Score=122.30  Aligned_cols=180  Identities=18%  Similarity=0.261  Sum_probs=124.6

Q ss_pred             CCCCEEEEEeCCCcEEEEeCCCCeEEEEec---ccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCC----
Q 004468           60 SKGSLLISGSDDTHINVWSYSSRKLLHSIE---TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGL----  132 (751)
Q Consensus        60 ~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~---~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~----  132 (751)
                      +.|--|+.|=.-|.|.+.|....+....+.   .-.+..|+|++|.|.. +.+++.+-.+|.+.++|....-+...    
T Consensus       183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~-~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~  261 (636)
T KOG2394|consen  183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGS-DSLFLVAHASGNLYLYDKEIVCGATAPSYQ  261 (636)
T ss_pred             CCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCC-CceEEEEEecCceEEeeccccccCCCCccc
Confidence            456678888888889988876522211110   1234789999999996 56777778899999998753211110    


Q ss_pred             --CC------------CCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEE
Q 004468          133 --DD------------NAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILL  198 (751)
Q Consensus       133 --~~------------~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~  198 (751)
                        ..            ....|+..+.--.+.|...+|+| ++.+||+.|.||.+||||+.+.+..               
T Consensus       262 ~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~-DG~~LA~VSqDGfLRvF~fdt~eLl---------------  325 (636)
T KOG2394|consen  262 ALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSP-DGKYLATVSQDGFLRIFDFDTQELL---------------  325 (636)
T ss_pred             ccCCCCeeEEeeeeccccCCccceeEeccccccceeEcC-CCceEEEEecCceEEEeeccHHHHH---------------
Confidence              00            00123333444456899999999 8899999999999999999886532               


Q ss_pred             ecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCcc
Q 004468          199 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRS  278 (751)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  278 (751)
                                ......-..+.|++|+| |++||++|+.|-.|.||.+...+.+..                    .+||.
T Consensus       326 ----------g~mkSYFGGLLCvcWSP-DGKyIvtGGEDDLVtVwSf~erRVVAR--------------------GqGHk  374 (636)
T KOG2394|consen  326 ----------GVMKSYFGGLLCVCWSP-DGKYIVTGGEDDLVTVWSFEERRVVAR--------------------GQGHK  374 (636)
T ss_pred             ----------HHHHhhccceEEEEEcC-CccEEEecCCcceEEEEEeccceEEEe--------------------ccccc
Confidence                      01111235689999999 589999999999999999876543321                    14566


Q ss_pred             ccceEEEEEc
Q 004468          279 SLHLTHVTFS  288 (751)
Q Consensus       279 ~~~vt~v~fs  288 (751)
                      + +|+.|+|+
T Consensus       375 S-WVs~VaFD  383 (636)
T KOG2394|consen  375 S-WVSVVAFD  383 (636)
T ss_pred             c-ceeeEeec
Confidence            5 68888887

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.25  E-value=7e-11  Score=113.92  Aligned_cols=163  Identities=17%  Similarity=0.268  Sum_probs=124.1

Q ss_pred             cCCCcEEEEEECC-CCC--EEEEEeCCCcEEEEeCCCCeEEEEec---------ccCCcceEEEEEecCCCCcEEEEEEC
Q 004468           48 GHQGCVNAISWNS-KGS--LLISGSDDTHINVWSYSSRKLLHSIE---------TGHSANVFCTKFVPETSDELVVSGAG  115 (751)
Q Consensus        48 gH~~~V~~l~~s~-dg~--~LaSgs~Dg~I~IWd~~~~~~~~~l~---------~~h~~~V~~v~fsp~s~~~~l~sgs~  115 (751)
                      +..+.|.|..|.. +++  +|+.|-.+|.|.+||+.++..+..+.         ..|..+|.++.|.+..  ..=++|+.
T Consensus       148 ~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~--~rGisgga  225 (323)
T KOG0322|consen  148 SKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSC--DRGISGGA  225 (323)
T ss_pred             cccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhh--cCCcCCCc
Confidence            4567888888754 333  56778899999999999885444432         4799999999998773  44577888


Q ss_pred             CCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccce
Q 004468          116 DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRN  195 (751)
Q Consensus       116 Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~  195 (751)
                      +..+..|.+....+.+.      ......-.+-.|..+..-| ++++++|+|.|+.||+|..++..++            
T Consensus       226 ~dkl~~~Sl~~s~gslq------~~~e~~lknpGv~gvrIRp-D~KIlATAGWD~RiRVyswrtl~pL------------  286 (323)
T KOG0322|consen  226 DDKLVMYSLNHSTGSLQ------IRKEITLKNPGVSGVRIRP-DGKILATAGWDHRIRVYSWRTLNPL------------  286 (323)
T ss_pred             cccceeeeeccccCccc------ccceEEecCCCccceEEcc-CCcEEeecccCCcEEEEEeccCCch------------
Confidence            88999999987544331      1122222344577888888 7799999999999999999998753            


Q ss_pred             EEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeC
Q 004468          196 ILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDR  245 (751)
Q Consensus       196 ~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~  245 (751)
                                   .....|...|++++|+|+ ..+++.++.|+.|-+|++
T Consensus       287 -------------AVLkyHsagvn~vAfspd-~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  287 -------------AVLKYHSAGVNAVAFSPD-CELMAAASKDARISLWKL  322 (323)
T ss_pred             -------------hhhhhhhcceeEEEeCCC-CchhhhccCCceEEeeec
Confidence                         223337789999999994 789999999999999986

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.24  E-value=7.5e-10  Score=111.84  Aligned_cols=195  Identities=12%  Similarity=0.148  Sum_probs=138.9

Q ss_pred             cEEEEEECCCCCEEEEEeCCC--cEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCC
Q 004468           52 CVNAISWNSKGSLLISGSDDT--HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSG  129 (751)
Q Consensus        52 ~V~~l~~s~dg~~LaSgs~Dg--~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~  129 (751)
                      .|--+-|+.  .++|..+.+.  .++|.+.+.+..+..+.  ....|.+|++...    .|+.+=. ..|+|||++..  
T Consensus        48 ~IvEmLFSS--SLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~--fpt~IL~VrmNr~----RLvV~Le-e~IyIydI~~M--  116 (391)
T KOG2110|consen   48 SIVEMLFSS--SLVAIVSIKQPRKLKVVHFKKKTTICEIF--FPTSILAVRMNRK----RLVVCLE-ESIYIYDIKDM--  116 (391)
T ss_pred             EEEEeeccc--ceeEEEecCCCceEEEEEcccCceEEEEe--cCCceEEEEEccc----eEEEEEc-ccEEEEecccc--
Confidence            355555664  4666655544  49999999888877763  5667999999876    4444433 34999999964  


Q ss_pred             CCCCCCCCCCceeecc---cCCceeEEEEecCCCCEEEE-Ee-CCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCc
Q 004468          130 RGLDDNAITPSALYQC---HTRRVKKLAVEVGNPHVVWS-AS-EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGA  204 (751)
Q Consensus       130 ~~~~~~~~~~~~~~~~---h~~~V~~l~~sp~~~~~l~s-~s-~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~  204 (751)
                              ++++++..   +...+..+++++. +.+++- ++ .-|.|.+||+.+-+..                     
T Consensus       117 --------klLhTI~t~~~n~~gl~AlS~n~~-n~ylAyp~s~t~GdV~l~d~~nl~~v---------------------  166 (391)
T KOG2110|consen  117 --------KLLHTIETTPPNPKGLCALSPNNA-NCYLAYPGSTTSGDVVLFDTINLQPV---------------------  166 (391)
T ss_pred             --------eeehhhhccCCCccceEeeccCCC-CceEEecCCCCCceEEEEEcccceee---------------------
Confidence                    45555543   4444555555542 234443 22 3589999998876532                     


Q ss_pred             eecccCCCCCccceEEEEEeCCCCcEEEEEeCCCe-EEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceE
Q 004468          205 KRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAF-ARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLT  283 (751)
Q Consensus       205 ~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~-IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt  283 (751)
                          .....|...+.+++|++ +|.+||+++..|+ ||||.+.+++.+.++..+                   -....|.
T Consensus       167 ----~~I~aH~~~lAalafs~-~G~llATASeKGTVIRVf~v~~G~kl~eFRRG-------------------~~~~~Iy  222 (391)
T KOG2110|consen  167 ----NTINAHKGPLAALAFSP-DGTLLATASEKGTVIRVFSVPEGQKLYEFRRG-------------------TYPVSIY  222 (391)
T ss_pred             ----eEEEecCCceeEEEECC-CCCEEEEeccCceEEEEEEcCCccEeeeeeCC-------------------ceeeEEE
Confidence                12224888999999999 5899999999886 589999988877665432                   1222599


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 004468          284 HVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (751)
Q Consensus       284 ~v~fspdg~~Ll~~s~d~~I~lwdl~~~  311 (751)
                      +++|+|++++|.+.+..++|+||.+...
T Consensus       223 SL~Fs~ds~~L~~sS~TeTVHiFKL~~~  250 (391)
T KOG2110|consen  223 SLSFSPDSQFLAASSNTETVHIFKLEKV  250 (391)
T ss_pred             EEEECCCCCeEEEecCCCeEEEEEeccc
Confidence            9999999999999999999999999883

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.23  E-value=2.5e-11  Score=125.35  Aligned_cols=214  Identities=14%  Similarity=0.177  Sum_probs=163.2

Q ss_pred             cEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCC
Q 004468           52 CVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRG  131 (751)
Q Consensus        52 ~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~  131 (751)
                      .-..+.++.+|++|+.|+..|.|-.+|..++++...+  .-...|.++.|..+  .++||.+ ....+.|||-..     
T Consensus       131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei--~v~Etv~Dv~~LHn--eq~~AVA-QK~y~yvYD~~G-----  200 (545)
T KOG1272|consen  131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEI--NVMETVRDVTFLHN--EQFFAVA-QKKYVYVYDNNG-----  200 (545)
T ss_pred             CCeeeeecCCccEEEecCCccceeeeecccceeeeee--ehhhhhhhhhhhcc--hHHHHhh-hhceEEEecCCC-----
Confidence            4457889999999999999999999999999888877  23567999999988  5666654 678899999763     


Q ss_pred             CCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCC
Q 004468          132 LDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADP  211 (751)
Q Consensus       132 ~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  211 (751)
                            ..++.++. ...|..+.|-| .-.+|+++++.|.++--|+.+++....                         .
T Consensus       201 ------tElHClk~-~~~v~rLeFLP-yHfLL~~~~~~G~L~Y~DVS~GklVa~-------------------------~  247 (545)
T KOG1272|consen  201 ------TELHCLKR-HIRVARLEFLP-YHFLLVAASEAGFLKYQDVSTGKLVAS-------------------------I  247 (545)
T ss_pred             ------cEEeehhh-cCchhhhcccc-hhheeeecccCCceEEEeechhhhhHH-------------------------H
Confidence                  22555554 35688999999 558899999999999999999874311                         1


Q ss_pred             CCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCC
Q 004468          212 PKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNG  291 (751)
Q Consensus       212 ~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg  291 (751)
                      ......+..+.-+|. .-.+-+|...|+|.+|...+.+++..+                    ..|.+ +|.+|++.++|
T Consensus       248 ~t~~G~~~vm~qNP~-NaVih~GhsnGtVSlWSP~skePLvKi--------------------LcH~g-~V~siAv~~~G  305 (545)
T KOG1272|consen  248 RTGAGRTDVMKQNPY-NAVIHLGHSNGTVSLWSPNSKEPLVKI--------------------LCHRG-PVSSIAVDRGG  305 (545)
T ss_pred             HccCCccchhhcCCc-cceEEEcCCCceEEecCCCCcchHHHH--------------------HhcCC-CcceEEECCCC
Confidence            112345677788885 568889999999999999887765433                    12444 69999999999


Q ss_pred             CEEEEEeCCCcEEEEECCCCCcceeeeecCCCceeEEeCC
Q 004468          292 EEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTP  331 (751)
Q Consensus       292 ~~Ll~~s~d~~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp  331 (751)
                      +|+++++.|..++|||+++-.+....+. ......+++|-
T Consensus       306 ~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sq  344 (545)
T KOG1272|consen  306 RYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQ  344 (545)
T ss_pred             cEEeecccccceeEeeeccccccceeec-CCCcccccccc
Confidence            9999999999999999998553333333 44444444443

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.21  E-value=6.7e-09  Score=103.16  Aligned_cols=186  Identities=20%  Similarity=0.325  Sum_probs=134.7

Q ss_pred             Cccc-ccccccchhhhccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCC-CCeEEEEecccC-CcceEEE
Q 004468           23 RPDV-NHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYS-SRKLLHSIETGH-SANVFCT   99 (751)
Q Consensus        23 ~~~~-~~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~-~~~~~~~l~~~h-~~~V~~v   99 (751)
                      +|.+ .+.|-+|++..++  ++.+|. ...+|.+|.+.++  +|+.. ..++|.||... +-+.++.+.+.- ...  -+
T Consensus        69 ~pky~pNkviIWDD~k~~--~i~el~-f~~~I~~V~l~r~--riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkG--lC  140 (346)
T KOG2111|consen   69 RPKYPPNKVIIWDDLKER--CIIELS-FNSEIKAVKLRRD--RIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKG--LC  140 (346)
T ss_pred             CCCCCCceEEEEecccCc--EEEEEE-eccceeeEEEcCC--eEEEE-ecCeEEEEEcCCChhheeeeecccCCCc--eE
Confidence            3444 6889999976555  455554 4678999999865  55555 45689999987 556666663322 233  33


Q ss_pred             EEecCCCCcEEEE-EECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCc-EEEEec
Q 004468          100 KFVPETSDELVVS-GAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGT-LRQHDF  177 (751)
Q Consensus       100 ~fsp~s~~~~l~s-gs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~-I~iwDl  177 (751)
                      +.+|..+..+||- |-.-|.|+|-|+.....        .+...+..|...|.+++.+- .|.++||+|..|| |||||.
T Consensus       141 ~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~--------~~p~~I~AH~s~Iacv~Ln~-~Gt~vATaStkGTLIRIFdt  211 (346)
T KOG2111|consen  141 SLCPTSNKSLLAFPGFKTGQVQIVDLASTKP--------NAPSIINAHDSDIACVALNL-QGTLVATASTKGTLIRIFDT  211 (346)
T ss_pred             eecCCCCceEEEcCCCccceEEEEEhhhcCc--------CCceEEEcccCceeEEEEcC-CccEEEEeccCcEEEEEEEc
Confidence            4555543445553 44568999999985321        23578899999999999998 6799999999998 689999


Q ss_pred             CCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCC
Q 004468          178 RQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP  249 (751)
Q Consensus       178 r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~  249 (751)
                      ++++.+              ..++.|.         ....|.+|+||| +..+|++++..|+|+|+.++...
T Consensus       212 ~~g~~l--------------~E~RRG~---------d~A~iy~iaFSp-~~s~LavsSdKgTlHiF~l~~~~  259 (346)
T KOG2111|consen  212 EDGTLL--------------QELRRGV---------DRADIYCIAFSP-NSSWLAVSSDKGTLHIFSLRDTE  259 (346)
T ss_pred             CCCcEe--------------eeeecCC---------chheEEEEEeCC-CccEEEEEcCCCeEEEEEeecCC
Confidence            998744              2233332         456899999999 58999999999999999998644

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.21  E-value=4.3e-10  Score=119.03  Aligned_cols=259  Identities=16%  Similarity=0.189  Sum_probs=167.1

Q ss_pred             ccccchhhhccccccEEeccCCCcEEEEEECCCCCE-EEEEeCCCcEEEEeCCCCeEEEE---------e--c-------
Q 004468           29 SLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSL-LISGSDDTHINVWSYSSRKLLHS---------I--E-------   89 (751)
Q Consensus        29 ~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~~-LaSgs~Dg~I~IWd~~~~~~~~~---------l--~-------   89 (751)
                      .++-.....+++.+++.|. |...-+.|..+|||+| ||||-..-.|++||+..-.+...         +  +       
T Consensus        31 ~lkkd~~~~~rieLiQdfe-~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~  109 (703)
T KOG2321|consen   31 QLKKDVDYRQRIELIQDFE-MPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKS  109 (703)
T ss_pred             HHhhchHHHHHHHHHHhcC-CccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhh
Confidence            3344445667777777775 8888899999999995 56777888999999864321100         0  0       


Q ss_pred             ---------ccC-----------CcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCc
Q 004468           90 ---------TGH-----------SANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRR  149 (751)
Q Consensus        90 ---------~~h-----------~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~  149 (751)
                               .-|           ...-.+++++..+ -.+++. +....|+=++++.  |        .-+..+....+.
T Consensus       110 v~L~~DR~IefHak~G~hy~~RIP~~GRDm~y~~~s-cDly~~-gsg~evYRlNLEq--G--------rfL~P~~~~~~~  177 (703)
T KOG2321|consen  110 VFLQNDRTIEFHAKYGRHYRTRIPKFGRDMKYHKPS-CDLYLV-GSGSEVYRLNLEQ--G--------RFLNPFETDSGE  177 (703)
T ss_pred             eEeecCceeeehhhcCeeeeeecCcCCccccccCCC-ccEEEe-ecCcceEEEEccc--c--------cccccccccccc
Confidence                     000           0111233333332 233333 3345566667764  3        335666667789


Q ss_pred             eeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCC--CCCccceEEEEEeCCC
Q 004468          150 VKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADP--PKQTLSLKSCDISSTR  227 (751)
Q Consensus       150 V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~v~~i~~sp~~  227 (751)
                      +++|..++ ...+|++|+.||.|-.||.|....+.....            ...    +...  ......|+++.|+-+ 
T Consensus       178 lN~v~in~-~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~------------~~~----v~s~pg~~~~~svTal~F~d~-  239 (703)
T KOG2321|consen  178 LNVVSINE-EHGLLACGTEDGVVEFWDPRDKSRVGTLDA------------ASS----VNSHPGGDAAPSVTALKFRDD-  239 (703)
T ss_pred             ceeeeecC-ccceEEecccCceEEEecchhhhhheeeec------------ccc----cCCCccccccCcceEEEecCC-
Confidence            99999999 447999999999999999998775421111            000    0111  113456999999984 


Q ss_pred             CcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCC-EEEEEeCCCcEEEE
Q 004468          228 PHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGE-EVLLSYSGEHVYLM  306 (751)
Q Consensus       228 ~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~-~Ll~~s~d~~I~lw  306 (751)
                      +-.+++|..+|.|.|||+|..+++..-.                   ++ ...+|..+.|.+.+. --+++.....++||
T Consensus       240 gL~~aVGts~G~v~iyDLRa~~pl~~kd-------------------h~-~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiW  299 (703)
T KOG2321|consen  240 GLHVAVGTSTGSVLIYDLRASKPLLVKD-------------------HG-YELPIKKLDWQDTDQQNKVVSMDKRILKIW  299 (703)
T ss_pred             ceeEEeeccCCcEEEEEcccCCceeecc-------------------cC-CccceeeecccccCCCceEEecchHHhhhc
Confidence            8999999999999999999877653211                   11 123688999987533 34555667899999


Q ss_pred             ECCCCCcceeeeecCCCceeEEeCCCCCCcccC
Q 004468          307 DVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQ  339 (751)
Q Consensus       307 dl~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~  339 (751)
                      |-.+++.... ......++.+|+-|......++
T Consensus       300 d~~~Gk~~as-iEpt~~lND~C~~p~sGm~f~A  331 (703)
T KOG2321|consen  300 DECTGKPMAS-IEPTSDLNDFCFVPGSGMFFTA  331 (703)
T ss_pred             ccccCCceee-ccccCCcCceeeecCCceEEEe
Confidence            9999764333 3333447788888876655444

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.20  E-value=3.6e-11  Score=126.22  Aligned_cols=104  Identities=18%  Similarity=0.358  Sum_probs=90.5

Q ss_pred             cccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEE
Q 004468           41 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR  120 (751)
Q Consensus        41 ~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~  120 (751)
                      .++..+.--.++|+..+|+|||++||+.|.||.++|+|+.+.+++..+ +..-+...||+|+||  |++|++|+.|..|.
T Consensus       281 NPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~m-kSYFGGLLCvcWSPD--GKyIvtGGEDDLVt  357 (636)
T KOG2394|consen  281 NPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVM-KSYFGGLLCVCWSPD--GKYIVTGGEDDLVT  357 (636)
T ss_pred             CccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHH-HhhccceEEEEEcCC--ccEEEecCCcceEE
Confidence            455555556679999999999999999999999999999988777666 566688999999999  89999999999999


Q ss_pred             EEECCCCCCCCCCCCCCCCceeecccCCceeEEEEec
Q 004468          121 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEV  157 (751)
Q Consensus       121 vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp  157 (751)
                      ||.+...          +.+..-++|+..|..++|.|
T Consensus       358 VwSf~er----------RVVARGqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  358 VWSFEER----------RVVARGQGHKSWVSVVAFDP  384 (636)
T ss_pred             EEEeccc----------eEEEeccccccceeeEeecc
Confidence            9999854          45677789999999999974

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.20  E-value=1.7e-09  Score=107.25  Aligned_cols=220  Identities=10%  Similarity=0.133  Sum_probs=140.9

Q ss_pred             EEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEE-EEECC------CcEEEEECC
Q 004468           53 VNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVV-SGAGD------AEVRLFNLS  125 (751)
Q Consensus        53 V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~-sgs~D------g~V~vwd~~  125 (751)
                      ...++|+.|...++.|.++| .+||+++.-+..... .-+.+++.-+...--+  ++|+ .|+..      ..|.|||=.
T Consensus         8 ~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r-~~~~~G~~~veMLfR~--N~laLVGGg~~pky~pNkviIWDD~   83 (346)
T KOG2111|consen    8 TLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASR-QFIDGGFKIVEMLFRS--NYLALVGGGSRPKYPPNKVIIWDDL   83 (346)
T ss_pred             eeEEEEccCCceEEEEecCc-eEEEecCchhhhhhh-ccccCchhhhhHhhhh--ceEEEecCCCCCCCCCceEEEEecc
Confidence            44599999999999887765 899998764332222 2233333333333332  3443 45444      579999933


Q ss_pred             CCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCC-CCCCCCC-----------------
Q 004468          126 RFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQG-SSCPPAG-----------------  187 (751)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~-~~~~~~~-----------------  187 (751)
                      .  .        .++..+. -..+|+++.+.+ +  .++.. .+..|.+|.+... +......                 
T Consensus        84 k--~--------~~i~el~-f~~~I~~V~l~r-~--riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k  148 (346)
T KOG2111|consen   84 K--E--------RCIIELS-FNSEIKAVKLRR-D--RIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNK  148 (346)
T ss_pred             c--C--------cEEEEEE-eccceeeEEEcC-C--eEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCc
Confidence            2  1        4455554 578899999986 3  34333 3568888877632 2111000                 


Q ss_pred             -----CCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCe-EEEEeCCCCCCccccCCCCCCC
Q 004468          188 -----SSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAF-ARLYDRRMLPPLTSCQKRMSPP  261 (751)
Q Consensus       188 -----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~-IriwD~~~~~~~~~~~~~~~~~  261 (751)
                           .+.......+.++.......-...+.|...|.|++++.+ |.++|+++..|+ |||||..++.++.++..     
T Consensus       149 ~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~-Gt~vATaStkGTLIRIFdt~~g~~l~E~RR-----  222 (346)
T KOG2111|consen  149 SLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQ-GTLVATASTKGTLIRIFDTEDGTLLQELRR-----  222 (346)
T ss_pred             eEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCC-ccEEEEeccCcEEEEEEEcCCCcEeeeeec-----
Confidence                 011111222333333222112334568889999999995 899999999986 69999999887765432     


Q ss_pred             CccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 004468          262 PCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (751)
Q Consensus       262 ~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~  311 (751)
                                    |-....|.+++||||+.+|+++|..|+|+||.+...
T Consensus       223 --------------G~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~  258 (346)
T KOG2111|consen  223 --------------GVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDT  258 (346)
T ss_pred             --------------CCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence                          222225999999999999999999999999999874

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.19  E-value=9.4e-10  Score=107.92  Aligned_cols=148  Identities=14%  Similarity=0.216  Sum_probs=101.9

Q ss_pred             EEEECCCCCEEEEEeC---C-------CcEEEEeCC-CCeEEEEecccCCcceEEEEEecCCCCcEEE--EEECCCcEEE
Q 004468           55 AISWNSKGSLLISGSD---D-------THINVWSYS-SRKLLHSIETGHSANVFCTKFVPETSDELVV--SGAGDAEVRL  121 (751)
Q Consensus        55 ~l~~s~dg~~LaSgs~---D-------g~I~IWd~~-~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~--sgs~Dg~V~v  121 (751)
                      .+.|+++|++|+.-..   |       +...||-+. ....+..+.....+.|.+++|+|+  ++.|+  +|..+..|.+
T Consensus        10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~--g~~favi~g~~~~~v~l   87 (194)
T PF08662_consen   10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPN--GNEFAVIYGSMPAKVTL   87 (194)
T ss_pred             EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcC--CCEEEEEEccCCcccEE
Confidence            6889999987764432   1       224455442 223344443345567999999999  56654  3456789999


Q ss_pred             EECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCC---CcEEEEecCCCCCCCCCCCCCCccceEEE
Q 004468          122 FNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED---GTLRQHDFRQGSSCPPAGSSHQECRNILL  198 (751)
Q Consensus       122 wd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~D---g~I~iwDlr~~~~~~~~~~~~~~~~~~l~  198 (751)
                      ||++.           +++..+  +...++.|.|+| ++++|++++.+   |.|.+||+++.+.+.              
T Consensus        88 yd~~~-----------~~i~~~--~~~~~n~i~wsP-~G~~l~~~g~~n~~G~l~~wd~~~~~~i~--------------  139 (194)
T PF08662_consen   88 YDVKG-----------KKIFSF--GTQPRNTISWSP-DGRFLVLAGFGNLNGDLEFWDVRKKKKIS--------------  139 (194)
T ss_pred             EcCcc-----------cEeEee--cCCCceEEEECC-CCCEEEEEEccCCCcEEEEEECCCCEEee--------------
Confidence            99973           345555  467788999999 67888887753   679999999655321              


Q ss_pred             ecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeC------CCeEEEEeCC
Q 004468          199 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGS------DAFARLYDRR  246 (751)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~------D~~IriwD~~  246 (751)
                                 ..  ....++.++|+|+ +++|+++..      |+.++||+..
T Consensus       140 -----------~~--~~~~~t~~~WsPd-Gr~~~ta~t~~r~~~dng~~Iw~~~  179 (194)
T PF08662_consen  140 -----------TF--EHSDATDVEWSPD-GRYLATATTSPRLRVDNGFKIWSFQ  179 (194)
T ss_pred             -----------cc--ccCcEEEEEEcCC-CCEEEEEEeccceeccccEEEEEec
Confidence                       00  1234789999995 788888764      7899999985

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.18  E-value=2e-09  Score=119.80  Aligned_cols=270  Identities=12%  Similarity=0.138  Sum_probs=169.6

Q ss_pred             cccccccccchhhh--ccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEE
Q 004468           24 PDVNHSLQMHSSLV--RRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKF  101 (751)
Q Consensus        24 ~~~~~~l~~~~~~i--~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~f  101 (751)
                      .+.+.++.+|..+-  ..-...+.|.=|...|++++|+++|.+|.||+..+.+.+|.+.+++  ++++..-.+.|..+.+
T Consensus       223 ~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~--kqfLPRLgs~I~~i~v  300 (792)
T KOG1963|consen  223 GDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK--KQFLPRLGSPILHIVV  300 (792)
T ss_pred             eccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCC--cccccccCCeeEEEEE
Confidence            45678899999887  2233456788999999999999999999999999999999999887  4555677899999999


Q ss_pred             ecCCCCcEEEEEECCCcEEEEECCCCCCCCC-CCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCC
Q 004468          102 VPETSDELVVSGAGDAEVRLFNLSRFSGRGL-DDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQG  180 (751)
Q Consensus       102 sp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~-~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~  180 (751)
                      +|+  +.+.+....|..|.+-.......+.. ..........-....+-.+.++++| -.+.++-.+.-|+|.+||+-+.
T Consensus       301 S~d--s~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idp-r~~~~vln~~~g~vQ~ydl~td  377 (792)
T KOG1963|consen  301 SPD--SDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDP-RTNSLVLNGHPGHVQFYDLYTD  377 (792)
T ss_pred             cCC--CCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcC-CCCceeecCCCceEEEEecccc
Confidence            999  67787778899999987754221110 0000000000112345567788888 5567778889999999999876


Q ss_pred             CCCCCCCCC-----CCc-----------------------------------cceEEEecccCcee----cccCCCCCcc
Q 004468          181 SSCPPAGSS-----HQE-----------------------------------CRNILLDLRCGAKR----SLADPPKQTL  216 (751)
Q Consensus       181 ~~~~~~~~~-----~~~-----------------------------------~~~~l~~~~~~~~~----~~~~~~~~~~  216 (751)
                      +........     ..+                                   ..-.+|........    .....|....
T Consensus       378 ~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~  457 (792)
T KOG1963|consen  378 STIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNA  457 (792)
T ss_pred             ceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCce
Confidence            644211000     000                                   00011111110000    0011121222


Q ss_pred             ceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEE
Q 004468          217 SLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLL  296 (751)
Q Consensus       217 ~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~  296 (751)
                      .+..+..+|.....+++++.||.++||-+...+.+......   =.|..   ..+    -| ..+++.++|+.||. +++
T Consensus       458 ~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~---W~c~~---i~s----y~-k~~i~a~~fs~dGs-lla  525 (792)
T KOG1963|consen  458 FVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSN---WTCKA---IGS----YH-KTPITALCFSQDGS-LLA  525 (792)
T ss_pred             eEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccc---eEEee---eec----cc-cCcccchhhcCCCc-EEE
Confidence            33334445544458999999999999998654433221100   00110   000    12 23689999999996 566


Q ss_pred             EeCCCcEEEEECCC
Q 004468          297 SYSGEHVYLMDVNH  310 (751)
Q Consensus       297 ~s~d~~I~lwdl~~  310 (751)
                      .+.++.|.+||..+
T Consensus       526 ~s~~~~Itiwd~~~  539 (792)
T KOG1963|consen  526 VSFDDTITIWDYDT  539 (792)
T ss_pred             EecCCEEEEecCCC
Confidence            66788999999988

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.17  E-value=3.3e-11  Score=124.47  Aligned_cols=217  Identities=15%  Similarity=0.193  Sum_probs=159.4

Q ss_pred             CcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCC
Q 004468           51 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGR  130 (751)
Q Consensus        51 ~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~  130 (751)
                      ..|..+.|-.+.+++|.+- ...+.|||- .|..++.+ ..| ..|+-+.|.|..  -+|++++..|.++.-|+.++   
T Consensus       171 Etv~Dv~~LHneq~~AVAQ-K~y~yvYD~-~GtElHCl-k~~-~~v~rLeFLPyH--fLL~~~~~~G~L~Y~DVS~G---  241 (545)
T KOG1272|consen  171 ETVRDVTFLHNEQFFAVAQ-KKYVYVYDN-NGTELHCL-KRH-IRVARLEFLPYH--FLLVAASEAGFLKYQDVSTG---  241 (545)
T ss_pred             hhhhhhhhhcchHHHHhhh-hceEEEecC-CCcEEeeh-hhc-Cchhhhcccchh--heeeecccCCceEEEeechh---
Confidence            3455666666777888774 468999994 57888888 444 569999999994  78889999999999999976   


Q ss_pred             CCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccC
Q 004468          131 GLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLAD  210 (751)
Q Consensus       131 ~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  210 (751)
                             +.+..+..-.+.+..++-+|-+ -++-+|...|+|.+|.....+++                         ..
T Consensus       242 -------klVa~~~t~~G~~~vm~qNP~N-aVih~GhsnGtVSlWSP~skePL-------------------------vK  288 (545)
T KOG1272|consen  242 -------KLVASIRTGAGRTDVMKQNPYN-AVIHLGHSNGTVSLWSPNSKEPL-------------------------VK  288 (545)
T ss_pred             -------hhhHHHHccCCccchhhcCCcc-ceEEEcCCCceEEecCCCCcchH-------------------------HH
Confidence                   5577777778888889999944 67888999999999988776543                         11


Q ss_pred             CCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCC
Q 004468          211 PPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPN  290 (751)
Q Consensus       211 ~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspd  290 (751)
                      .-.|...|.+|++.+ +|+|++|.+.|..|+|||+|+...+.++.                      ...+...++||..
T Consensus       289 iLcH~g~V~siAv~~-~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~----------------------tp~~a~~ls~Sqk  345 (545)
T KOG1272|consen  289 ILCHRGPVSSIAVDR-GGRYMATTGLDRKVKIWDLRNFYQLHTYR----------------------TPHPASNLSLSQK  345 (545)
T ss_pred             HHhcCCCcceEEECC-CCcEEeecccccceeEeeeccccccceee----------------------cCCCccccccccc
Confidence            223788999999999 58999999999999999999876443321                      1114677888877


Q ss_pred             CCEEEEEeCCCcEEEEE-CCCCC----cceeeeecCCCceeEEeCCCCC
Q 004468          291 GEEVLLSYSGEHVYLMD-VNHAG----GRAMRYTVGDASKIMSFTPTLN  334 (751)
Q Consensus       291 g~~Ll~~s~d~~I~lwd-l~~~~----~~~~~~~~~~~~~~~~~sp~~~  334 (751)
                      |  +++.+....|.||. .-.+.    .+-.....+.++..+.|-|--+
T Consensus       346 g--lLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~ED  392 (545)
T KOG1272|consen  346 G--LLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYED  392 (545)
T ss_pred             c--ceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHH
Confidence            6  66777777999995 33311    1122223345666677777543

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.16  E-value=8.7e-10  Score=122.60  Aligned_cols=202  Identities=12%  Similarity=0.103  Sum_probs=126.1

Q ss_pred             CCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECC---CcEEEEECCCCCCCCCCCCCCCCceeecccC
Q 004468           71 DTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD---AEVRLFNLSRFSGRGLDDNAITPSALYQCHT  147 (751)
Q Consensus        71 Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~D---g~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~  147 (751)
                      +..|.|||..... ...+ ..|...|.+.+|+|+  |+.|+.++.+   ..|++||+.++..        ..+..+.+| 
T Consensus       183 ~~~i~i~d~dg~~-~~~l-t~~~~~v~~p~wSPD--G~~la~~s~~~~~~~i~i~dl~tg~~--------~~l~~~~g~-  249 (429)
T PRK01742        183 PYEVRVADYDGFN-QFIV-NRSSQPLMSPAWSPD--GSKLAYVSFENKKSQLVVHDLRSGAR--------KVVASFRGH-  249 (429)
T ss_pred             eEEEEEECCCCCC-ceEe-ccCCCccccceEcCC--CCEEEEEEecCCCcEEEEEeCCCCce--------EEEecCCCc-
Confidence            5789999986444 4555 678889999999999  7888877654   3699999986421        123333443 


Q ss_pred             CceeEEEEecCCCCEEEE-EeCCCcEEEE--ecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEe
Q 004468          148 RRVKKLAVEVGNPHVVWS-ASEDGTLRQH--DFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDIS  224 (751)
Q Consensus       148 ~~V~~l~~sp~~~~~l~s-~s~Dg~I~iw--Dlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~s  224 (751)
                        ...++|+| +++.|+. .+.+|.+.+|  |+.++...            .           +   ..+...+....|+
T Consensus       250 --~~~~~wSP-DG~~La~~~~~~g~~~Iy~~d~~~~~~~------------~-----------l---t~~~~~~~~~~wS  300 (429)
T PRK01742        250 --NGAPAFSP-DGSRLAFASSKDGVLNIYVMGANGGTPS------------Q-----------L---TSGAGNNTEPSWS  300 (429)
T ss_pred             --cCceeECC-CCCEEEEEEecCCcEEEEEEECCCCCeE------------e-----------e---ccCCCCcCCEEEC
Confidence              34689999 4555554 4578877666  44433210            0           1   1123346778999


Q ss_pred             CCCCcEEE-EEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcE
Q 004468          225 STRPHLLL-VGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHV  303 (751)
Q Consensus       225 p~~~~~l~-sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I  303 (751)
                      |+ ++.|+ ++..++...||++......            ....        ++..   ..+.|+|||++|+..+.+ .+
T Consensus       301 pD-G~~i~f~s~~~g~~~I~~~~~~~~~------------~~~l--------~~~~---~~~~~SpDG~~ia~~~~~-~i  355 (429)
T PRK01742        301 PD-GQSILFTSDRSGSPQVYRMSASGGG------------ASLV--------GGRG---YSAQISADGKTLVMINGD-NV  355 (429)
T ss_pred             CC-CCEEEEEECCCCCceEEEEECCCCC------------eEEe--------cCCC---CCccCCCCCCEEEEEcCC-CE
Confidence            96 56555 5556788889987532110            0000        0111   346799999999888775 56


Q ss_pred             EEEECCCCCcceeeeecCCCceeEEeCCCCCCcccCCC
Q 004468          304 YLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPP  341 (751)
Q Consensus       304 ~lwdl~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~  341 (751)
                      .+||+.++......  .........|+|+...+.+...
T Consensus       356 ~~~Dl~~g~~~~lt--~~~~~~~~~~sPdG~~i~~~s~  391 (429)
T PRK01742        356 VKQDLTSGSTEVLS--STFLDESPSISPNGIMIIYSST  391 (429)
T ss_pred             EEEECCCCCeEEec--CCCCCCCceECCCCCEEEEEEc
Confidence            67999886533221  1223355678888877766543

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.14  E-value=5.4e-08  Score=105.13  Aligned_cols=198  Identities=17%  Similarity=0.177  Sum_probs=122.0

Q ss_pred             CEE-EEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCce
Q 004468           63 SLL-ISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSA  141 (751)
Q Consensus        63 ~~L-aSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~  141 (751)
                      +++ ++-..++.|.|.|..+.+.+..+..++ ..-..+.|+|+  ++++++++.|+.|.++|+.+.          +.+.
T Consensus         6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~-~~h~~~~~s~D--gr~~yv~~rdg~vsviD~~~~----------~~v~   72 (369)
T PF02239_consen    6 NLFYVVERGSGSVAVIDGATNKVVARIPTGG-APHAGLKFSPD--GRYLYVANRDGTVSVIDLATG----------KVVA   72 (369)
T ss_dssp             GEEEEEEGGGTEEEEEETTT-SEEEEEE-ST-TEEEEEE-TT---SSEEEEEETTSEEEEEETTSS----------SEEE
T ss_pred             cEEEEEecCCCEEEEEECCCCeEEEEEcCCC-CceeEEEecCC--CCEEEEEcCCCeEEEEECCcc----------cEEE
Confidence            444 456678999999999999999994433 33456789999  899999999999999999975          4466


Q ss_pred             eecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEE
Q 004468          142 LYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSC  221 (751)
Q Consensus       142 ~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i  221 (751)
                      .+.. .....++++++++..+++++-.++.+.++|.++.+...              ....+..   . .......+..+
T Consensus        73 ~i~~-G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~--------------~I~~~~~---~-~~~~~~Rv~aI  133 (369)
T PF02239_consen   73 TIKV-GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVK--------------TIPTGGM---P-VDGPESRVAAI  133 (369)
T ss_dssp             EEE--SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEE--------------EEE--EE-----TTTS---EEEE
T ss_pred             EEec-CCCcceEEEcCCCCEEEEEecCCCceeEecccccccee--------------ecccccc---c-ccccCCCceeE
Confidence            6654 34467899999554455556689999999998876321              1110000   0 00023456777


Q ss_pred             EEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEe-CC
Q 004468          222 DISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSY-SG  300 (751)
Q Consensus       222 ~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s-~d  300 (751)
                      ..+|..+.++++--.-+.|.+.|....+++.           ...+         ..........|+|+++|++++. .+
T Consensus       134 v~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~-----------~~~i---------~~g~~~~D~~~dpdgry~~va~~~s  193 (369)
T PF02239_consen  134 VASPGRPEFVVNLKDTGEIWVVDYSDPKNLK-----------VTTI---------KVGRFPHDGGFDPDGRYFLVAANGS  193 (369)
T ss_dssp             EE-SSSSEEEEEETTTTEEEEEETTTSSCEE-----------EEEE---------E--TTEEEEEE-TTSSEEEEEEGGG
T ss_pred             EecCCCCEEEEEEccCCeEEEEEeccccccc-----------eeee---------cccccccccccCcccceeeeccccc
Confidence            7788544344444445888888877643221           0111         0111367889999999987764 47


Q ss_pred             CcEEEEECCCCC
Q 004468          301 EHVYLMDVNHAG  312 (751)
Q Consensus       301 ~~I~lwdl~~~~  312 (751)
                      +.|-++|..+.+
T Consensus       194 n~i~viD~~~~k  205 (369)
T PF02239_consen  194 NKIAVIDTKTGK  205 (369)
T ss_dssp             TEEEEEETTTTE
T ss_pred             ceeEEEeeccce
Confidence            899999998854

...

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.14  E-value=1.3e-09  Score=108.94  Aligned_cols=236  Identities=14%  Similarity=0.233  Sum_probs=152.0

Q ss_pred             CCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeE----EEEecccCC------------cceEEEEEecCCCCcEEEEE
Q 004468           50 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKL----LHSIETGHS------------ANVFCTKFVPETSDELVVSG  113 (751)
Q Consensus        50 ~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~----~~~l~~~h~------------~~V~~v~fsp~s~~~~l~sg  113 (751)
                      .+-|.+|.|..+|.+||||..+|.|.++.-.....    ..+..+.|.            ..|..++|.+..+...++..
T Consensus        25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls  104 (433)
T KOG1354|consen   25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS  104 (433)
T ss_pred             hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence            45788999999999999999999999996432211    222224453            46889999999767778888


Q ss_pred             ECCCcEEEEECCCCCCCCC--------C-----------------CCCCCCceee-cccCCceeEEEEecCCCCEEEEEe
Q 004468          114 AGDAEVRLFNLSRFSGRGL--------D-----------------DNAITPSALY-QCHTRRVKKLAVEVGNPHVVWSAS  167 (751)
Q Consensus       114 s~Dg~V~vwd~~~~~~~~~--------~-----------------~~~~~~~~~~-~~h~~~V~~l~~sp~~~~~l~s~s  167 (751)
                      ..|.+|++|-+.....+..        .                 .....|.+.+ ..|+-.|++|.++. +...++| +
T Consensus       105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~Ns-D~Et~lS-A  182 (433)
T KOG1354|consen  105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNS-DKETFLS-A  182 (433)
T ss_pred             cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecC-ccceEee-c
Confidence            8999999999875322220        0                 0001122222 46888899999998 5556644 5


Q ss_pred             CCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCC
Q 004468          168 EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM  247 (751)
Q Consensus       168 ~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~  247 (751)
                      .|=.|-+|++.-...+          .+ +.+.+...      ...-..-|++..|+|...++++-.+..|.||+-|+|.
T Consensus       183 DdLRINLWnlei~d~s----------Fn-IVDIKP~n------mEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~  245 (433)
T KOG1354|consen  183 DDLRINLWNLEIIDQS----------FN-IVDIKPAN------MEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQ  245 (433)
T ss_pred             cceeeeeccccccCCc----------ee-EEEccccC------HHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechh
Confidence            6788999998764322          11 22222111      0112345788899998888999999999999999995


Q ss_pred             CCCcc----ccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcc
Q 004468          248 LPPLT----SCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGR  314 (751)
Q Consensus       248 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~  314 (751)
                      ...-.    .+..+. .|.....| ...       -..|..+.|+++|+|+++-.. -+|+|||++....+
T Consensus       246 ~aLCd~hsKlfEepe-dp~~rsff-sei-------IsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~p  306 (433)
T KOG1354|consen  246 SALCDAHSKLFEEPE-DPSSRSFF-SEI-------ISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKP  306 (433)
T ss_pred             hhhhcchhhhhcccc-CCcchhhH-HHH-------hhhhhceEEccCCcEEEEecc-ceeEEEeccccCCc
Confidence            43211    111111 11111111 000       114889999999999887543 59999999764433

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.13  E-value=2.8e-09  Score=104.65  Aligned_cols=229  Identities=12%  Similarity=0.193  Sum_probs=158.3

Q ss_pred             CCCcEEEEEECC---CCC-EEEEEeCCCcEEEEeCCCCeEEEEecccC---C---cceEEEEEecCCCCcEEEEEECCCc
Q 004468           49 HQGCVNAISWNS---KGS-LLISGSDDTHINVWSYSSRKLLHSIETGH---S---ANVFCTKFVPETSDELVVSGAGDAE  118 (751)
Q Consensus        49 H~~~V~~l~~s~---dg~-~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h---~---~~V~~v~fsp~s~~~~l~sgs~Dg~  118 (751)
                      -+..++.+.|..   +|. .|+-+..+|.|.++..........+ .+-   .   ....++.|++.  +..++++-.+|.
T Consensus        68 dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L-~~ls~~ki~~~~~lslD~~~~--~~~i~vs~s~G~  144 (339)
T KOG0280|consen   68 DTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHL-RGLSSKKISVVEALSLDISTS--GTKIFVSDSRGS  144 (339)
T ss_pred             cccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeee-cccchhhhhheeeeEEEeecc--CceEEEEcCCCc
Confidence            345678888874   566 6778888999999986544333333 111   1   12457889988  677888888899


Q ss_pred             EEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEE
Q 004468          119 VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILL  198 (751)
Q Consensus       119 V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~  198 (751)
                      +.+-+.....        .+.++.++.|....+.+.|+..+++++.+||+|+.+..||+|.+..             .+|
T Consensus       145 ~~~v~~t~~~--------le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~-------------~i~  203 (339)
T KOG0280|consen  145 ISGVYETEMV--------LEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKT-------------FIW  203 (339)
T ss_pred             EEEEecceee--------eeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcc-------------eee
Confidence            8855554321        2456688999999999999988889999999999999999995542             122


Q ss_pred             ecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCC-CCCCccccCCCCCCCCccccccccccccCCc
Q 004468          199 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRR-MLPPLTSCQKRMSPPPCVNYFCPMHLSEHGR  277 (751)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  277 (751)
                      .          ....|...|.+|.-+|.++.+|++|+.|-.|++||.| +++++..-                      .
T Consensus       204 ~----------n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~----------------------~  251 (339)
T KOG0280|consen  204 H----------NSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKA----------------------K  251 (339)
T ss_pred             e----------cceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccC----------------------c
Confidence            1          1223778899999999889999999999999999999 44444221                      1


Q ss_pred             cccceEEEEEcCCCC-EEEEEeCCCcEEEEECCCCCcc-eeeeecCCCceeEEeCCCC
Q 004468          278 SSLHLTHVTFSPNGE-EVLLSYSGEHVYLMDVNHAGGR-AMRYTVGDASKIMSFTPTL  333 (751)
Q Consensus       278 ~~~~vt~v~fspdg~-~Ll~~s~d~~I~lwdl~~~~~~-~~~~~~~~~~~~~~~sp~~  333 (751)
                      ..+.|+.+.++|.-. .|++++.-+-.+|-+++..... ...+........+++..+-
T Consensus       252 v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DW  309 (339)
T KOG0280|consen  252 VGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDW  309 (339)
T ss_pred             cccceEEEEecchhhhHHHHHHHhcCceEEEecccccchheeeeccccccceeecccc
Confidence            123599999999543 4455555556777777765322 2233333344455555443

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.13  E-value=6.7e-09  Score=115.46  Aligned_cols=203  Identities=13%  Similarity=0.093  Sum_probs=128.9

Q ss_pred             ccEEeccCCCcEEEEEECCCCCEEEEEeCC---CcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEE-EEECCC
Q 004468           42 QERELEGHQGCVNAISWNSKGSLLISGSDD---THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVV-SGAGDA  117 (751)
Q Consensus        42 ~~~~L~gH~~~V~~l~~s~dg~~LaSgs~D---g~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~-sgs~Dg  117 (751)
                      ..+.|..+...+...+|+|||++||.++.+   ..|.+||+.+++... + ..+.+.+.+++|+|+  ++.|+ +.+.++
T Consensus       181 ~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~-~~~~~~~~~~~~spD--g~~l~~~~~~~~  256 (417)
T TIGR02800       181 NPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-V-ASFPGMNGAPAFSPD--GSKLAVSLSKDG  256 (417)
T ss_pred             CCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-e-ecCCCCccceEECCC--CCEEEEEECCCC
Confidence            345666777789999999999999987654   479999998875543 2 345666788999999  66554 555554


Q ss_pred             --cEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEe-CCC--cEEEEecCCCCCCCCCCCCCCc
Q 004468          118 --EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSAS-EDG--TLRQHDFRQGSSCPPAGSSHQE  192 (751)
Q Consensus       118 --~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s-~Dg--~I~iwDlr~~~~~~~~~~~~~~  192 (751)
                        .|++||+....           ...+..+...+....|+|+ +..|+.++ .++  .|.++|+.+++..         
T Consensus       257 ~~~i~~~d~~~~~-----------~~~l~~~~~~~~~~~~s~d-g~~l~~~s~~~g~~~iy~~d~~~~~~~---------  315 (417)
T TIGR02800       257 NPDIYVMDLDGKQ-----------LTRLTNGPGIDTEPSWSPD-GKSIAFTSDRGGSPQIYMMDADGGEVR---------  315 (417)
T ss_pred             CccEEEEECCCCC-----------EEECCCCCCCCCCEEECCC-CCEEEEEECCCCCceEEEEECCCCCEE---------
Confidence              58888887532           3334445555567789994 45554444 444  4666676554310         


Q ss_pred             cceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCC---eEEEEeCCCCCCccccCCCCCCCCccccccc
Q 004468          193 CRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDA---FARLYDRRMLPPLTSCQKRMSPPPCVNYFCP  269 (751)
Q Consensus       193 ~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~---~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~  269 (751)
                         .           +..   ....+....|+|+ +++|+.++.++   .|.+||+.+.... .             .  
T Consensus       316 ---~-----------l~~---~~~~~~~~~~spd-g~~i~~~~~~~~~~~i~~~d~~~~~~~-~-------------l--  361 (417)
T TIGR02800       316 ---R-----------LTF---RGGYNASPSWSPD-GDLIAFVHREGGGFNIAVMDLDGGGER-V-------------L--  361 (417)
T ss_pred             ---E-----------eec---CCCCccCeEECCC-CCEEEEEEccCCceEEEEEeCCCCCeE-E-------------c--
Confidence               0           100   1223556789995 67787777765   7888888763211 0             0  


Q ss_pred             cccccCCccccceEEEEEcCCCCEEEEEeCCC---cEEEEECCC
Q 004468          270 MHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGE---HVYLMDVNH  310 (751)
Q Consensus       270 ~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~---~I~lwdl~~  310 (751)
                         ....    ......|+|||++|+..+.++   .+++++...
T Consensus       362 ---~~~~----~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~g  398 (417)
T TIGR02800       362 ---TDTG----LDESPSFAPNGRMILYATTRGGRGVLGLVSTDG  398 (417)
T ss_pred             ---cCCC----CCCCceECCCCCEEEEEEeCCCcEEEEEEECCC
Confidence               0000    123457999999998877743   466666544

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.10  E-value=1.2e-09  Score=113.71  Aligned_cols=267  Identities=15%  Similarity=0.115  Sum_probs=179.4

Q ss_pred             EEeccCCCcEEEEEECC--CCCEEEEEeCCCcEEEEeCC-CCeEE-EEecccCCcceEEEEEecCCCCcEEEEEECCCcE
Q 004468           44 RELEGHQGCVNAISWNS--KGSLLISGSDDTHINVWSYS-SRKLL-HSIETGHSANVFCTKFVPETSDELVVSGAGDAEV  119 (751)
Q Consensus        44 ~~L~gH~~~V~~l~~s~--dg~~LaSgs~Dg~I~IWd~~-~~~~~-~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V  119 (751)
                      .-..||...|..-+|-|  +.+.|++++.||.|++=.+. ++.+. ......|.+.|.-++.-|++ ...|.|++.|+.|
T Consensus       179 ~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~s-p~~f~S~geD~~v  257 (559)
T KOG1334|consen  179 SFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDS-PKPFLSCGEDAVV  257 (559)
T ss_pred             ccccccccchhhhhccCCCCCcCceeccccCceeeeeeccccceecceecccccCccceeeecCCC-CCcccccccccce
Confidence            34468988888888988  45689999999999997754 34333 22236799999999999997 7889999999999


Q ss_pred             EEEECCCCCCCCCCCCCCCCceeecccCC---ceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceE
Q 004468          120 RLFNLSRFSGRGLDDNAITPSALYQCHTR---RVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNI  196 (751)
Q Consensus       120 ~vwd~~~~~~~~~~~~~~~~~~~~~~h~~---~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~  196 (751)
                      .-.|++.....       .....-..+..   ....|+..|.+.+.|++++.|..+++||.|.-..-...+..+.-|...
T Consensus       258 ~~~Dlr~~~pa-------~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~h  330 (559)
T KOG1334|consen  258 FHIDLRQDVPA-------EKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHH  330 (559)
T ss_pred             eeeeeccCCcc-------ceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCcc
Confidence            99999864221       11222222333   467899999888899999999999999998755321111111111111


Q ss_pred             EEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCC
Q 004468          197 LLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHG  276 (751)
Q Consensus       197 l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  276 (751)
                      +.             ......|++++|+.+ +.-++++-+|-.|+++...+..--....     ......+.+...  .|
T Consensus       331 l~-------------~d~~v~ITgl~Ysh~-~sElLaSYnDe~IYLF~~~~~~G~~p~~-----~s~~~~~~k~vY--KG  389 (559)
T KOG1334|consen  331 LV-------------EDDPVNITGLVYSHD-GSELLASYNDEDIYLFNKSMGDGSEPDP-----SSPREQYVKRVY--KG  389 (559)
T ss_pred             cc-------------ccCcccceeEEecCC-ccceeeeecccceEEeccccccCCCCCC-----Ccchhhccchhh--cc
Confidence            11             124567999999984 5566667788899999554432100000     000012222212  23


Q ss_pred             ccc-cceEEEEE-cCCCCEEEEEeCCCcEEEEECCCCCcceeeeecCCCceeEEeCCCCCCcccC
Q 004468          277 RSS-LHLTHVTF-SPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQ  339 (751)
Q Consensus       277 ~~~-~~vt~v~f-spdg~~Ll~~s~d~~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~  339 (751)
                      |.+ ..|..+-| -|...|+++|+..|.|.||+-.++.....+....++++.+..+|-..-++..
T Consensus       390 HrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsS  454 (559)
T KOG1334|consen  390 HRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASS  454 (559)
T ss_pred             cccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhcc
Confidence            432 13666654 5788999999999999999999987777777777788888888877666544

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.09  E-value=2.7e-09  Score=104.73  Aligned_cols=112  Identities=10%  Similarity=0.259  Sum_probs=86.1

Q ss_pred             CCCcEEEEEECCCCCEEEEE--eCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECC---CcEEEEE
Q 004468           49 HQGCVNAISWNSKGSLLISG--SDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD---AEVRLFN  123 (751)
Q Consensus        49 H~~~V~~l~~s~dg~~LaSg--s~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~D---g~V~vwd  123 (751)
                      ..+.|.+++|+|+|+.||..  ..++.|.|||+. ++.+..+   +...++.|.|+|+  |++|++|+.+   |.|.+||
T Consensus        58 ~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~---~~~~~n~i~wsP~--G~~l~~~g~~n~~G~l~~wd  131 (194)
T PF08662_consen   58 KEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSF---GTQPRNTISWSPD--GRFLVLAGFGNLNGDLEFWD  131 (194)
T ss_pred             CCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEee---cCCCceEEEECCC--CCEEEEEEccCCCcEEEEEE
Confidence            34579999999999987654  467899999996 6677766   3567889999999  8999998754   5699999


Q ss_pred             CCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeC------CCcEEEEecCC
Q 004468          124 LSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASE------DGTLRQHDFRQ  179 (751)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~------Dg~I~iwDlr~  179 (751)
                      +...          +.+....  ...+..++|+| ++++|++++.      |..++||++..
T Consensus       132 ~~~~----------~~i~~~~--~~~~t~~~WsP-dGr~~~ta~t~~r~~~dng~~Iw~~~G  180 (194)
T PF08662_consen  132 VRKK----------KKISTFE--HSDATDVEWSP-DGRYLATATTSPRLRVDNGFKIWSFQG  180 (194)
T ss_pred             CCCC----------EEeeccc--cCcEEEEEEcC-CCCEEEEEEeccceeccccEEEEEecC
Confidence            9853          3344433  33478999999 6677777653      78899999854

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.09  E-value=1.3e-08  Score=113.60  Aligned_cols=203  Identities=15%  Similarity=0.150  Sum_probs=130.3

Q ss_pred             CcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEEC---CCcEEEEECCCCCCCCCCCCCCCCceeecccCC
Q 004468           72 THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG---DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTR  148 (751)
Q Consensus        72 g~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~---Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~  148 (751)
                      ..|.+||.. +.....+ +.|...+.+.+|+|+  |+.|+..+.   +..|.+||+.++.           ...+..+.+
T Consensus       182 ~~l~~~d~d-g~~~~~l-t~~~~~v~~p~wSpD--G~~lay~s~~~g~~~i~~~dl~~g~-----------~~~l~~~~g  246 (435)
T PRK05137        182 KRLAIMDQD-GANVRYL-TDGSSLVLTPRFSPN--RQEITYMSYANGRPRVYLLDLETGQ-----------RELVGNFPG  246 (435)
T ss_pred             eEEEEECCC-CCCcEEE-ecCCCCeEeeEECCC--CCEEEEEEecCCCCEEEEEECCCCc-----------EEEeecCCC
Confidence            378888975 4444555 678889999999999  788777653   4689999998642           234445666


Q ss_pred             ceeEEEEecCCCCEEEEEeCCCc--EEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCC
Q 004468          149 RVKKLAVEVGNPHVVWSASEDGT--LRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISST  226 (751)
Q Consensus       149 ~V~~l~~sp~~~~~l~s~s~Dg~--I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~  226 (751)
                      .+...+|+|++..++++.+.+|.  |.+||+.++...                       .+..   +........|+|+
T Consensus       247 ~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~-----------------------~Lt~---~~~~~~~~~~spD  300 (435)
T PRK05137        247 MTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTT-----------------------RLTD---SPAIDTSPSYSPD  300 (435)
T ss_pred             cccCcEECCCCCEEEEEEecCCCceEEEEECCCCceE-----------------------EccC---CCCccCceeEcCC
Confidence            77889999965556667777776  666687765421                       0111   1223456799995


Q ss_pred             CCcEEEEEeC-C--CeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCC---
Q 004468          227 RPHLLLVGGS-D--AFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG---  300 (751)
Q Consensus       227 ~~~~l~sgs~-D--~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d---  300 (751)
                       ++.|+..+. +  ..|.+||+......              .+.      . . ...+....|+|||++|+....+   
T Consensus       301 -G~~i~f~s~~~g~~~Iy~~d~~g~~~~--------------~lt------~-~-~~~~~~~~~SpdG~~ia~~~~~~~~  357 (435)
T PRK05137        301 -GSQIVFESDRSGSPQLYVMNADGSNPR--------------RIS------F-G-GGRYSTPVWSPRGDLIAFTKQGGGQ  357 (435)
T ss_pred             -CCEEEEEECCCCCCeEEEEECCCCCeE--------------Eee------c-C-CCcccCeEECCCCCEEEEEEcCCCc
Confidence             676666553 3  36778887643211              110      0 0 1125568899999999877653   


Q ss_pred             CcEEEEECCCCCcceeeeecCCCceeEEeCCCCCCcccCC
Q 004468          301 EHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQP  340 (751)
Q Consensus       301 ~~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~  340 (751)
                      ..|++||+.++.. . ............|+|+.+.+.+..
T Consensus       358 ~~i~~~d~~~~~~-~-~lt~~~~~~~p~~spDG~~i~~~~  395 (435)
T PRK05137        358 FSIGVMKPDGSGE-R-ILTSGFLVEGPTWAPNGRVIMFFR  395 (435)
T ss_pred             eEEEEEECCCCce-E-eccCCCCCCCCeECCCCCEEEEEE
Confidence            3688999866432 2 222233456778899887776653

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.07  E-value=5.6e-09  Score=106.31  Aligned_cols=166  Identities=15%  Similarity=0.239  Sum_probs=130.5

Q ss_pred             CcEEEEEECCC-CCEEEEEeCC--CcEEEEeCCCCeEEEEecccC--------CcceEEEEEecCCCCcEEEEEECCCcE
Q 004468           51 GCVNAISWNSK-GSLLISGSDD--THINVWSYSSRKLLHSIETGH--------SANVFCTKFVPETSDELVVSGAGDAEV  119 (751)
Q Consensus        51 ~~V~~l~~s~d-g~~LaSgs~D--g~I~IWd~~~~~~~~~l~~~h--------~~~V~~v~fsp~s~~~~l~sgs~Dg~V  119 (751)
                      ..+..|.-++. ..++|+|+..  ..+.|||++..+++..-+.--        .-.++++.|.|......||++..-+.|
T Consensus       149 ~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqv  228 (412)
T KOG3881|consen  149 PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQV  228 (412)
T ss_pred             CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeE
Confidence            34555666654 3466779988  889999999876665442211        234678999988656899999999999


Q ss_pred             EEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEe
Q 004468          120 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD  199 (751)
Q Consensus       120 ~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~  199 (751)
                      ++||...+.         +|+..+.--..+|.++...| +++++++|..-|.+..||+|.+...                
T Consensus       229 R~YDt~~qR---------RPV~~fd~~E~~is~~~l~p-~gn~Iy~gn~~g~l~~FD~r~~kl~----------------  282 (412)
T KOG3881|consen  229 RLYDTRHQR---------RPVAQFDFLENPISSTGLTP-SGNFIYTGNTKGQLAKFDLRGGKLL----------------  282 (412)
T ss_pred             EEecCcccC---------cceeEeccccCcceeeeecC-CCcEEEEecccchhheecccCceee----------------
Confidence            999999532         67888888899999999999 7799999999999999999998643                


Q ss_pred             cccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCc
Q 004468          200 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPL  251 (751)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~  251 (751)
                              .....+..+.+.++..+|. ..++++++-|.+|||+|+.+.+.+
T Consensus       283 --------g~~~kg~tGsirsih~hp~-~~~las~GLDRyvRIhD~ktrkll  325 (412)
T KOG3881|consen  283 --------GCGLKGITGSIRSIHCHPT-HPVLASCGLDRYVRIHDIKTRKLL  325 (412)
T ss_pred             --------ccccCCccCCcceEEEcCC-CceEEeeccceeEEEeecccchhh
Confidence                    1223345678999999994 689999999999999999986544

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.06  E-value=2.5e-08  Score=111.33  Aligned_cols=203  Identities=12%  Similarity=0.080  Sum_probs=125.3

Q ss_pred             cEEeccCCCcEEEEEECCCCCEEEEEeCC---CcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEE-EEECCC-
Q 004468           43 ERELEGHQGCVNAISWNSKGSLLISGSDD---THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVV-SGAGDA-  117 (751)
Q Consensus        43 ~~~L~gH~~~V~~l~~s~dg~~LaSgs~D---g~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~-sgs~Dg-  117 (751)
                      .+.+..|...+....|+|||+.||..+.+   ..|.+||+.+++... + ....+.+....|+|+  |+.|+ +.+.++ 
T Consensus       191 ~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l-~~~~g~~~~~~~SpD--G~~la~~~~~~g~  266 (430)
T PRK00178        191 AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-I-TNFEGLNGAPAWSPD--GSKLAFVLSKDGN  266 (430)
T ss_pred             ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-c-cCCCCCcCCeEECCC--CCEEEEEEccCCC
Confidence            45566677889999999999999877644   368999998876533 3 233455667999999  67665 555555 


Q ss_pred             -cEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCC--cEEEEecCCCCCCCCCCCCCCccc
Q 004468          118 -EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG--TLRQHDFRQGSSCPPAGSSHQECR  194 (751)
Q Consensus       118 -~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg--~I~iwDlr~~~~~~~~~~~~~~~~  194 (751)
                       .|.+||+..+.           ...+..+...+....|+|++..++++...+|  .|.++|+.+++..           
T Consensus       267 ~~Iy~~d~~~~~-----------~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~-----------  324 (430)
T PRK00178        267 PEIYVMDLASRQ-----------LSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAE-----------  324 (430)
T ss_pred             ceEEEEECCCCC-----------eEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEE-----------
Confidence             57788887532           3334445556677899995544444444444  4666666554311           


Q ss_pred             eEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeC-CC--eEEEEeCCCCCCccccCCCCCCCCccccccccc
Q 004468          195 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGS-DA--FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMH  271 (751)
Q Consensus       195 ~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~-D~--~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (751)
                       .+           ...   ........|+|+ +++|+..+. ++  .|.+||+.+++.. .             +..  
T Consensus       325 -~l-----------t~~---~~~~~~~~~Spd-g~~i~~~~~~~~~~~l~~~dl~tg~~~-~-------------lt~--  372 (430)
T PRK00178        325 -RV-----------TFV---GNYNARPRLSAD-GKTLVMVHRQDGNFHVAAQDLQRGSVR-I-------------LTD--  372 (430)
T ss_pred             -Ee-----------ecC---CCCccceEECCC-CCEEEEEEccCCceEEEEEECCCCCEE-E-------------ccC--
Confidence             00           000   011234679995 566665554 33  5788888765321 0             000  


Q ss_pred             cccCCccccceEEEEEcCCCCEEEEEeCC---CcEEEEECCC
Q 004468          272 LSEHGRSSLHLTHVTFSPNGEEVLLSYSG---EHVYLMDVNH  310 (751)
Q Consensus       272 ~~~~g~~~~~vt~v~fspdg~~Ll~~s~d---~~I~lwdl~~  310 (751)
                          ..   ......|+|||++|+..+.+   ..|++++++.
T Consensus       373 ----~~---~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g  407 (430)
T PRK00178        373 ----TS---LDESPSVAPNGTMLIYATRQQGRGVLMLVSING  407 (430)
T ss_pred             ----CC---CCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence                00   01235799999999877653   4578888865

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.06  E-value=7.6e-09  Score=115.30  Aligned_cols=203  Identities=11%  Similarity=0.075  Sum_probs=126.3

Q ss_pred             CcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEEC---CCcEEEEECCCCCCCCCCCCCCCCceeecccCC
Q 004468           72 THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG---DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTR  148 (751)
Q Consensus        72 g~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~---Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~  148 (751)
                      ..|.|||.. +.....+ ..|...+.+.+|+|+  ++.|+.++.   +..|.+||+..+.           ...+..+.+
T Consensus       184 ~~l~i~D~~-g~~~~~l-t~~~~~v~~p~wSpD--g~~la~~s~~~~~~~l~~~dl~~g~-----------~~~l~~~~g  248 (433)
T PRK04922        184 YALQVADSD-GYNPQTI-LRSAEPILSPAWSPD--GKKLAYVSFERGRSAIYVQDLATGQ-----------RELVASFRG  248 (433)
T ss_pred             EEEEEECCC-CCCceEe-ecCCCccccccCCCC--CCEEEEEecCCCCcEEEEEECCCCC-----------EEEeccCCC
Confidence            468999985 4444455 567788999999999  788887764   3469999997542           222333344


Q ss_pred             ceeEEEEecCCCCEEEEEeCCC--cEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCC
Q 004468          149 RVKKLAVEVGNPHVVWSASEDG--TLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISST  226 (751)
Q Consensus       149 ~V~~l~~sp~~~~~l~s~s~Dg--~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~  226 (751)
                      .+...+|+|++..++++.+.+|  .|.+||+.+++..                       .+.   .+.......+|+|+
T Consensus       249 ~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~-----------------------~lt---~~~~~~~~~~~spD  302 (433)
T PRK04922        249 INGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT-----------------------RLT---NHFGIDTEPTWAPD  302 (433)
T ss_pred             CccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeE-----------------------ECc---cCCCCccceEECCC
Confidence            4567899996555666667666  4888898776421                       010   01122356789995


Q ss_pred             CCcEEEEEe-CCCe--EEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCC--
Q 004468          227 RPHLLLVGG-SDAF--ARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGE--  301 (751)
Q Consensus       227 ~~~~l~sgs-~D~~--IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~--  301 (751)
                       ++.|+.++ .++.  |.++|+...+..              ..     ...+.   ....++|+|||++|+..+.++  
T Consensus       303 -G~~l~f~sd~~g~~~iy~~dl~~g~~~--------------~l-----t~~g~---~~~~~~~SpDG~~Ia~~~~~~~~  359 (433)
T PRK04922        303 -GKSIYFTSDRGGRPQIYRVAASGGSAE--------------RL-----TFQGN---YNARASVSPDGKKIAMVHGSGGQ  359 (433)
T ss_pred             -CCEEEEEECCCCCceEEEEECCCCCeE--------------Ee-----ecCCC---CccCEEECCCCCEEEEEECCCCc
Confidence             66666655 3444  566666543211              00     00111   134689999999998766533  


Q ss_pred             -cEEEEECCCCCcceeeeecCCCceeEEeCCCCCCcccCC
Q 004468          302 -HVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQP  340 (751)
Q Consensus       302 -~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~  340 (751)
                       .|++||+.++...  ....+.......|+|+.+.+.+..
T Consensus       360 ~~I~v~d~~~g~~~--~Lt~~~~~~~p~~spdG~~i~~~s  397 (433)
T PRK04922        360 YRIAVMDLSTGSVR--TLTPGSLDESPSFAPNGSMVLYAT  397 (433)
T ss_pred             eeEEEEECCCCCeE--ECCCCCCCCCceECCCCCEEEEEE
Confidence             6999999875433  222333445568888877766543

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.04  E-value=6.7e-09  Score=117.63  Aligned_cols=191  Identities=10%  Similarity=0.131  Sum_probs=146.2

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceE---EEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCC
Q 004468           61 KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVF---CTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAI  137 (751)
Q Consensus        61 dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~---~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~  137 (751)
                      +...++.+..+..+.|||...+.....+...-.....   -+-++++  .-++++|+.-+.|.+|+....          
T Consensus        98 e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~--~~~i~~gsv~~~iivW~~~~d----------  165 (967)
T KOG0974|consen   98 ENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAE--ELYIASGSVFGEIIVWKPHED----------  165 (967)
T ss_pred             hcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCc--EEEEEeccccccEEEEecccc----------
Confidence            4567888888999999999877776665222111111   2234555  468999999999999999832          


Q ss_pred             CCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccc
Q 004468          138 TPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLS  217 (751)
Q Consensus       138 ~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  217 (751)
                      +....+.+|.+.+.++.|+- ++++++|.|+|.++|+|++.+.+...                        ...-+|...
T Consensus       166 n~p~~l~GHeG~iF~i~~s~-dg~~i~s~SdDRsiRlW~i~s~~~~~------------------------~~~fgHsaR  220 (967)
T KOG0974|consen  166 NKPIRLKGHEGSIFSIVTSL-DGRYIASVSDDRSIRLWPIDSREVLG------------------------CTGFGHSAR  220 (967)
T ss_pred             CCcceecccCCceEEEEEcc-CCcEEEEEecCcceeeeecccccccC------------------------cccccccce
Confidence            22236889999999999998 78999999999999999999987442                        112247889


Q ss_pred             eEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEE
Q 004468          218 LKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLS  297 (751)
Q Consensus       218 v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~  297 (751)
                      |..+.|.|.   .+++++.|.+.++|+..-..              +..+       .+|....|..++..++.-.++++
T Consensus       221 vw~~~~~~n---~i~t~gedctcrvW~~~~~~--------------l~~y-------~~h~g~~iw~~~~~~~~~~~vT~  276 (967)
T KOG0974|consen  221 VWACCFLPN---RIITVGEDCTCRVWGVNGTQ--------------LEVY-------DEHSGKGIWKIAVPIGVIIKVTG  276 (967)
T ss_pred             eEEEEeccc---eeEEeccceEEEEEecccce--------------ehhh-------hhhhhcceeEEEEcCCceEEEee
Confidence            999999984   99999999999999654321              1111       34555579999999999999999


Q ss_pred             eCCCcEEEEECCCCC
Q 004468          298 YSGEHVYLMDVNHAG  312 (751)
Q Consensus       298 s~d~~I~lwdl~~~~  312 (751)
                      +.|+.+++||+.+..
T Consensus       277 g~Ds~lk~~~l~~r~  291 (967)
T KOG0974|consen  277 GNDSTLKLWDLNGRG  291 (967)
T ss_pred             ccCcchhhhhhhccc
Confidence            999999999998743

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.03  E-value=2.3e-09  Score=121.36  Aligned_cols=151  Identities=18%  Similarity=0.180  Sum_probs=118.1

Q ss_pred             EECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCC
Q 004468           57 SWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNA  136 (751)
Q Consensus        57 ~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~  136 (751)
                      -++++.-++++|+.-+.|++|+.........+ .||.+.|+++.|+-+  |.+++|+|.|.++|+|++.+..        
T Consensus       140 g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l-~GHeG~iF~i~~s~d--g~~i~s~SdDRsiRlW~i~s~~--------  208 (967)
T KOG0974|consen  140 GDSAEELYIASGSVFGEIIVWKPHEDNKPIRL-KGHEGSIFSIVTSLD--GRYIASVSDDRSIRLWPIDSRE--------  208 (967)
T ss_pred             eccCcEEEEEeccccccEEEEeccccCCccee-cccCCceEEEEEccC--CcEEEEEecCcceeeeeccccc--------
Confidence            34556668999999999999998733332335 899999999999999  8999999999999999999753        


Q ss_pred             CCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCcc
Q 004468          137 ITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTL  216 (751)
Q Consensus       137 ~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  216 (751)
                       ....+.-+|+.+|..++|.| +  .++|+++|-+.++|+....+..             .+.-+            ...
T Consensus       209 -~~~~~~fgHsaRvw~~~~~~-n--~i~t~gedctcrvW~~~~~~l~-------------~y~~h------------~g~  259 (967)
T KOG0974|consen  209 -VLGCTGFGHSARVWACCFLP-N--RIITVGEDCTCRVWGVNGTQLE-------------VYDEH------------SGK  259 (967)
T ss_pred             -ccCcccccccceeEEEEecc-c--eeEEeccceEEEEEecccceeh-------------hhhhh------------hhc
Confidence             22346678999999999998 4  8899999999999965443210             00000            124


Q ss_pred             ceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCC
Q 004468          217 SLKSCDISSTRPHLLLVGGSDAFARLYDRRML  248 (751)
Q Consensus       217 ~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~  248 (751)
                      .+..++..+ +...+++++.|+.+++||+...
T Consensus       260 ~iw~~~~~~-~~~~~vT~g~Ds~lk~~~l~~r  290 (967)
T KOG0974|consen  260 GIWKIAVPI-GVIIKVTGGNDSTLKLWDLNGR  290 (967)
T ss_pred             ceeEEEEcC-CceEEEeeccCcchhhhhhhcc
Confidence            578888888 4789999999999999998653

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.02  E-value=3.7e-08  Score=109.94  Aligned_cols=221  Identities=12%  Similarity=0.092  Sum_probs=124.9

Q ss_pred             EeccCCCcEEEEEECCCCCEEEEEeCC-C--cEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEE-EEECCCc--
Q 004468           45 ELEGHQGCVNAISWNSKGSLLISGSDD-T--HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVV-SGAGDAE--  118 (751)
Q Consensus        45 ~L~gH~~~V~~l~~s~dg~~LaSgs~D-g--~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~-sgs~Dg~--  118 (751)
                      .+..+...+....|+|||+.|+..+.+ +  .|.+||+.+++... + ....+.....+|+|+  |+.|+ +.+.++.  
T Consensus       212 ~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-l-t~~~g~~~~~~wSPD--G~~La~~~~~~g~~~  287 (448)
T PRK04792        212 MLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-V-TSFPGINGAPRFSPD--GKKLALVLSKDGQPE  287 (448)
T ss_pred             EeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-e-cCCCCCcCCeeECCC--CCEEEEEEeCCCCeE
Confidence            344456677899999999999877543 2  58888988776432 2 222344557899999  66555 5666775  


Q ss_pred             EEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCc--EEEEecCCCCCCCCCCCCCCccceE
Q 004468          119 VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGT--LRQHDFRQGSSCPPAGSSHQECRNI  196 (751)
Q Consensus       119 V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~--I~iwDlr~~~~~~~~~~~~~~~~~~  196 (751)
                      |.++|+..+.           ...+..+...+...+|+|++..++++...++.  |.++|+.+++..             
T Consensus       288 Iy~~dl~tg~-----------~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~-------------  343 (448)
T PRK04792        288 IYVVDIATKA-----------LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVS-------------  343 (448)
T ss_pred             EEEEECCCCC-----------eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEE-------------
Confidence            6667776431           33444455566788999955445445444554  555566554311             


Q ss_pred             EEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeC-CC--eEEEEeCCCCCCccccCCCCCCCCccccccccccc
Q 004468          197 LLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGS-DA--FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLS  273 (751)
Q Consensus       197 l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~-D~--~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (751)
                                .+..   ........+|+|+ +++|+..+. ++  .|.++|+.+++.. .             ...    
T Consensus       344 ----------~Lt~---~g~~~~~~~~SpD-G~~l~~~~~~~g~~~I~~~dl~~g~~~-~-------------lt~----  391 (448)
T PRK04792        344 ----------RLTF---EGEQNLGGSITPD-GRSMIMVNRTNGKFNIARQDLETGAMQ-V-------------LTS----  391 (448)
T ss_pred             ----------EEec---CCCCCcCeeECCC-CCEEEEEEecCCceEEEEEECCCCCeE-E-------------ccC----
Confidence                      0100   0011234589996 556555443 44  3455676654311 0             000    


Q ss_pred             cCCccccceEEEEEcCCCCEEEEEeCC-C--cEEEEECCCCCcceeeeecCCCceeEEeCC
Q 004468          274 EHGRSSLHLTHVTFSPNGEEVLLSYSG-E--HVYLMDVNHAGGRAMRYTVGDASKIMSFTP  331 (751)
Q Consensus       274 ~~g~~~~~vt~v~fspdg~~Ll~~s~d-~--~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp  331 (751)
                        ..   ......|+|||++|+..+.+ +  .+++++.+. ................+|+|
T Consensus       392 --~~---~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G-~~~~~l~~~~g~~~~p~Wsp  446 (448)
T PRK04792        392 --TR---LDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDG-RFKARLPAGQGEVKSPAWSP  446 (448)
T ss_pred             --CC---CCCCceECCCCCEEEEEEecCCceEEEEEECCC-CceEECcCCCCCcCCCccCC
Confidence              00   01234799999998876653 3  478888754 32222222233344455555

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.02  E-value=1.7e-08  Score=100.43  Aligned_cols=270  Identities=14%  Similarity=0.145  Sum_probs=165.7

Q ss_pred             CcEEEEEECCCCCEE-EEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCC
Q 004468           51 GCVNAISWNSKGSLL-ISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSG  129 (751)
Q Consensus        51 ~~V~~l~~s~dg~~L-aSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~  129 (751)
                      +.|.-+.|..|..++ .....|+.|.+|++....-...+ .....++.++.|+|++ ..+|.+...|-.|.||.+.+.. 
T Consensus        49 dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckI-deg~agls~~~WSPdg-rhiL~tseF~lriTVWSL~t~~-  125 (447)
T KOG4497|consen   49 DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKI-DEGQAGLSSISWSPDG-RHILLTSEFDLRITVWSLNTQK-  125 (447)
T ss_pred             HHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEe-ccCCCcceeeeECCCc-ceEeeeecceeEEEEEEeccce-
Confidence            467788999887654 45678999999999988888888 5667889999999993 2667788889999999998642 


Q ss_pred             CCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcE--------------EEEecCCCCCCCCCCCCCCccce
Q 004468          130 RGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTL--------------RQHDFRQGSSCPPAGSSHQECRN  195 (751)
Q Consensus       130 ~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I--------------~iwDlr~~~~~~~~~~~~~~~~~  195 (751)
                                ...+.-.+..++.++|+| ++++.+.++.-...              +-+++.+........ ....+..
T Consensus       126 ----------~~~~~~pK~~~kg~~f~~-dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieW-sPdg~~l  193 (447)
T KOG4497|consen  126 ----------GYLLPHPKTNVKGYAFHP-DGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEW-SPDGNWL  193 (447)
T ss_pred             ----------eEEecccccCceeEEECC-CCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceE-CCCCcEE
Confidence                      223333345578899999 66776666542111              111222211110000 1122223


Q ss_pred             EEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCC----------------
Q 004468          196 ILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMS----------------  259 (751)
Q Consensus       196 ~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~----------------  259 (751)
                      .+|+.--..+..   .-.....+..++|+|. +.+|++|+.|+.+||.+--+-++..++.....                
T Consensus       194 aVwd~~Leykv~---aYe~~lG~k~v~wsP~-~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~  269 (447)
T KOG4497|consen  194 AVWDNVLEYKVY---AYERGLGLKFVEWSPC-NQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSI  269 (447)
T ss_pred             EEecchhhheee---eeeeccceeEEEeccc-cceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcch
Confidence            333311110000   0012357889999994 79999999999999876555443322211000                


Q ss_pred             ---CCCcc----------------------------ccccccccccCCccccceEEEEEcCCCCEEEEEeC--CCcEEEE
Q 004468          260 ---PPPCV----------------------------NYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS--GEHVYLM  306 (751)
Q Consensus       260 ---~~~~~----------------------------~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~--d~~I~lw  306 (751)
                         .-.|+                            ....|..-  .......+--++||+|..++++-..  -+.+.||
T Consensus       270 ~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD--~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~W  347 (447)
T KOG4497|consen  270 VQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTD--FPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLW  347 (447)
T ss_pred             hhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCC--CCCcccccceeeecCCceEEeeecCCCCceEEEE
Confidence               00011                            11111110  1112234778999999999988655  5799999


Q ss_pred             ECCCCCcceeeeecCCCceeEEeCCCCCCcccCCCc
Q 004468          307 DVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPI  342 (751)
Q Consensus       307 dl~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~  342 (751)
                      |+++.+ ........++++.+.|.|....+..-...
T Consensus       348 dlq~l~-l~avLiQk~piraf~WdP~~prL~vctg~  382 (447)
T KOG4497|consen  348 DLQNLK-LHAVLIQKHPIRAFEWDPGRPRLVVCTGK  382 (447)
T ss_pred             echhhh-hhhhhhhccceeEEEeCCCCceEEEEcCC
Confidence            999954 33344456788999999987776554433

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.00  E-value=7.6e-09  Score=101.66  Aligned_cols=207  Identities=14%  Similarity=0.036  Sum_probs=142.5

Q ss_pred             EEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEE--EecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCC
Q 004468           53 VNAISWNSKGSLLISGSDDTHINVWSYSSRKLLH--SIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGR  130 (751)
Q Consensus        53 V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~--~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~  130 (751)
                      -.++.|++.|..++++-.+|.+.+-+........  .. ++|.-.++-++|+-.. .+++.+|+.|+.+..||++.+. .
T Consensus       124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~w-k~He~E~Wta~f~~~~-pnlvytGgDD~~l~~~D~R~p~-~  200 (339)
T KOG0280|consen  124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTW-KVHEFEAWTAKFSDKE-PNLVYTGGDDGSLSCWDIRIPK-T  200 (339)
T ss_pred             eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccc-cccceeeeeeecccCC-CceEEecCCCceEEEEEecCCc-c
Confidence            4578899999999999999999965544443332  44 7999999999999875 6899999999999999999532 1


Q ss_pred             CCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccC
Q 004468          131 GLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLAD  210 (751)
Q Consensus       131 ~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  210 (751)
                      .       .-+..+-|...|.+|.-+|..+.++++|+.|-.|++||+|....+..                         
T Consensus       201 ~-------i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~-------------------------  248 (339)
T KOG0280|consen  201 F-------IWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLF-------------------------  248 (339)
T ss_pred             e-------eeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccc-------------------------
Confidence            1       12225568999999999988899999999999999999996432200                         


Q ss_pred             CCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCC
Q 004468          211 PPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPN  290 (751)
Q Consensus       211 ~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspd  290 (751)
                      .....+.|..+..+|.....++.++..+-.+|-+.......               +...+.....|.+ -+..-.|...
T Consensus       249 ~~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e---------------~~~~~~s~~~hdS-l~YG~DWd~~  312 (339)
T KOG0280|consen  249 KAKVGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLE---------------FQIVLPSDKIHDS-LCYGGDWDSK  312 (339)
T ss_pred             cCccccceEEEEecchhhhHHHHHHHhcCceEEEecccccc---------------hheeeeccccccc-eeeccccccc
Confidence            01123678889999976666677777777788777653211               1111111123333 2445555444


Q ss_pred             CCEEEEEeC-CCcEE-EEECCC
Q 004468          291 GEEVLLSYS-GEHVY-LMDVNH  310 (751)
Q Consensus       291 g~~Ll~~s~-d~~I~-lwdl~~  310 (751)
                      ...|++++. |+.++ +|-.-+
T Consensus       313 ~~~lATCsFYDk~~~~~Wl~~t  334 (339)
T KOG0280|consen  313 DSFLATCSFYDKKIRQLWLHIT  334 (339)
T ss_pred             cceeeeeeccccceeeeeeecc
Confidence            456777653 77755 775444

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.00  E-value=2.1e-08  Score=111.45  Aligned_cols=205  Identities=12%  Similarity=0.070  Sum_probs=124.0

Q ss_pred             CcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECC---CcEEEEECCCCCCCCCCCCCCCCceeecccCC
Q 004468           72 THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD---AEVRLFNLSRFSGRGLDDNAITPSALYQCHTR  148 (751)
Q Consensus        72 g~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~D---g~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~  148 (751)
                      ..|.+||.. +.....+ ..+...+.+.+|+|+  |+.|+..+.+   ..|.+||+..+.           ...+....+
T Consensus       176 ~~L~~~D~d-G~~~~~l-~~~~~~v~~p~wSPD--G~~la~~s~~~~~~~I~~~dl~~g~-----------~~~l~~~~g  240 (427)
T PRK02889        176 YQLQISDAD-GQNAQSA-LSSPEPIISPAWSPD--GTKLAYVSFESKKPVVYVHDLATGR-----------RRVVANFKG  240 (427)
T ss_pred             cEEEEECCC-CCCceEe-ccCCCCcccceEcCC--CCEEEEEEccCCCcEEEEEECCCCC-----------EEEeecCCC
Confidence            457777764 4444455 567888999999999  7888776643   359999998642           122333344


Q ss_pred             ceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCC
Q 004468          149 RVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRP  228 (751)
Q Consensus       149 ~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~  228 (751)
                      .+...+|+|++..++++.+.+|...+|.+......                     ...+..   +........|+|+ +
T Consensus       241 ~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~---------------------~~~lt~---~~~~~~~~~wSpD-G  295 (427)
T PRK02889        241 SNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG---------------------LRRLTQ---SSGIDTEPFFSPD-G  295 (427)
T ss_pred             CccceEECCCCCEEEEEEccCCCceEEEEECCCCC---------------------cEECCC---CCCCCcCeEEcCC-C
Confidence            56688999955455557788888777765432100                     000111   1223456789995 6


Q ss_pred             cEEEEEe-CCCeEEEEeCC--CCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCC---c
Q 004468          229 HLLLVGG-SDAFARLYDRR--MLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGE---H  302 (751)
Q Consensus       229 ~~l~sgs-~D~~IriwD~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~---~  302 (751)
                      +.|+..+ .++...||.+.  ....              +...   .  .+.   ......|||||++|+..+.++   .
T Consensus       296 ~~l~f~s~~~g~~~Iy~~~~~~g~~--------------~~lt---~--~g~---~~~~~~~SpDG~~Ia~~s~~~g~~~  353 (427)
T PRK02889        296 RSIYFTSDRGGAPQIYRMPASGGAA--------------QRVT---F--TGS---YNTSPRISPDGKLLAYISRVGGAFK  353 (427)
T ss_pred             CEEEEEecCCCCcEEEEEECCCCce--------------EEEe---c--CCC---CcCceEECCCCCEEEEEEccCCcEE
Confidence            6665544 45666666653  2211              0000   0  111   134578999999998776543   6


Q ss_pred             EEEEECCCCCcceeeeecCCCceeEEeCCCCCCcccCC
Q 004468          303 VYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQP  340 (751)
Q Consensus       303 I~lwdl~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~  340 (751)
                      |++||+.++....+  ..........|+|+...+.+..
T Consensus       354 I~v~d~~~g~~~~l--t~~~~~~~p~~spdg~~l~~~~  389 (427)
T PRK02889        354 LYVQDLATGQVTAL--TDTTRDESPSFAPNGRYILYAT  389 (427)
T ss_pred             EEEEECCCCCeEEc--cCCCCccCceECCCCCEEEEEE
Confidence            99999988653322  2233445678899888776654

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.00  E-value=1.7e-09  Score=107.82  Aligned_cols=117  Identities=22%  Similarity=0.198  Sum_probs=101.1

Q ss_pred             CcchhHHHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCC
Q 004468          359 GLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDS  438 (751)
Q Consensus       359 ~~~~~~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~  438 (751)
                      .....+.|+..++.....+. |..||+.|+++|...+.+      ...|||||++|++-+-.   ..|+.||.+|+.+||
T Consensus        77 ~~~~AE~LK~eGN~~m~~~~-Y~eAv~kY~~AI~l~P~n------AVyycNRAAAy~~Lg~~---~~AVkDce~Al~iDp  146 (304)
T KOG0553|consen   77 DKALAESLKNEGNKLMKNKD-YQEAVDKYTEAIELDPTN------AVYYCNRAAAYSKLGEY---EDAVKDCESALSIDP  146 (304)
T ss_pred             HHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHhcCCCc------chHHHHHHHHHHHhcch---HHHHHHHHHHHhcCh
Confidence            44567889999999999998 999999999999987665      56999999999998764   359999999999999


Q ss_pred             CCcchHHHHHHHHHHhcchHHHHHHHHHhcccCCCChhhhHHHHHHH
Q 004468          439 SSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIK  485 (751)
Q Consensus       439 ~~~~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~~~~~~~~~~~  485 (751)
                      .+.|++.||.+|++.+|++.+|.++..+...+.|.....-..+....
T Consensus       147 ~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae  193 (304)
T KOG0553|consen  147 HYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAE  193 (304)
T ss_pred             HHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHH
Confidence            99999999999999999999999999999999998765544443333

>PRK03629 tolB translocation protein TolB; Provisional

Probab=98.97  E-value=6.7e-08  Score=107.39  Aligned_cols=203  Identities=13%  Similarity=0.145  Sum_probs=122.8

Q ss_pred             cEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEE---CCCcEEEEECCCCCCCCCCCCCCCCceeecccCCc
Q 004468           73 HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGA---GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRR  149 (751)
Q Consensus        73 ~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs---~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~  149 (751)
                      .|.+||...... ..+ ..+...+.+.+|+|+  |+.|+..+   .+..|.+|++..+..        +.+..+.   +.
T Consensus       180 ~l~~~d~dg~~~-~~l-t~~~~~~~~p~wSPD--G~~la~~s~~~g~~~i~i~dl~~G~~--------~~l~~~~---~~  244 (429)
T PRK03629        180 ELRVSDYDGYNQ-FVV-HRSPQPLMSPAWSPD--GSKLAYVTFESGRSALVIQTLANGAV--------RQVASFP---RH  244 (429)
T ss_pred             eEEEEcCCCCCC-EEe-ecCCCceeeeEEcCC--CCEEEEEEecCCCcEEEEEECCCCCe--------EEccCCC---CC
Confidence            688899864433 334 456778999999999  78777554   345799999976421        1122233   33


Q ss_pred             eeEEEEecCCCCEEEEEeCCC--cEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCC
Q 004468          150 VKKLAVEVGNPHVVWSASEDG--TLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR  227 (751)
Q Consensus       150 V~~l~~sp~~~~~l~s~s~Dg--~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~  227 (751)
                      +..++|+|++..++++.+.+|  .|.+||+.+++..                       .+..   ....+....|+|+ 
T Consensus       245 ~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~-----------------------~lt~---~~~~~~~~~wSPD-  297 (429)
T PRK03629        245 NGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR-----------------------QVTD---GRSNNTEPTWFPD-  297 (429)
T ss_pred             cCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEE-----------------------EccC---CCCCcCceEECCC-
Confidence            456899995544555555566  4888898765421                       0110   1234567899995 


Q ss_pred             CcEEEEEeC-CCeEEEE--eCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCC---C
Q 004468          228 PHLLLVGGS-DAFARLY--DRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG---E  301 (751)
Q Consensus       228 ~~~l~sgs~-D~~Iriw--D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d---~  301 (751)
                      ++.|+..+. ++...||  |+......              .+     ...+.   ......|+|||++|+..+.+   .
T Consensus       298 G~~I~f~s~~~g~~~Iy~~d~~~g~~~--------------~l-----t~~~~---~~~~~~~SpDG~~Ia~~~~~~g~~  355 (429)
T PRK03629        298 SQNLAYTSDQAGRPQVYKVNINGGAPQ--------------RI-----TWEGS---QNQDADVSSDGKFMVMVSSNGGQQ  355 (429)
T ss_pred             CCEEEEEeCCCCCceEEEEECCCCCeE--------------Ee-----ecCCC---CccCEEECCCCCEEEEEEccCCCc
Confidence            676665554 4444555  55433210              00     00011   24568899999998876653   4


Q ss_pred             cEEEEECCCCCcceeeeecCCCceeEEeCCCCCCcccCCC
Q 004468          302 HVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPP  341 (751)
Q Consensus       302 ~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~  341 (751)
                      .|++||+.++....+ . .........|+|+...+.+...
T Consensus       356 ~I~~~dl~~g~~~~L-t-~~~~~~~p~~SpDG~~i~~~s~  393 (429)
T PRK03629        356 HIAKQDLATGGVQVL-T-DTFLDETPSIAPNGTMVIYSSS  393 (429)
T ss_pred             eEEEEECCCCCeEEe-C-CCCCCCCceECCCCCEEEEEEc
Confidence            689999988643222 2 2223445778888887776554

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.93  E-value=1e-08  Score=102.68  Aligned_cols=243  Identities=17%  Similarity=0.229  Sum_probs=150.2

Q ss_pred             CcEEEEEECCCCC--EEEEEeCCCcEEEEeCCCCe-----------------------------------EEEEecccCC
Q 004468           51 GCVNAISWNSKGS--LLISGSDDTHINVWSYSSRK-----------------------------------LLHSIETGHS   93 (751)
Q Consensus        51 ~~V~~l~~s~dg~--~LaSgs~Dg~I~IWd~~~~~-----------------------------------~~~~l~~~h~   93 (751)
                      ..|+.+.|.++++  .++....|++|++|.+....                                   +...+..+|+
T Consensus        85 EKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHt  164 (433)
T KOG1354|consen   85 EKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHT  164 (433)
T ss_pred             hhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccce
Confidence            4689999998765  56666689999999875321                                   1112235799


Q ss_pred             cceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEE
Q 004468           94 ANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLR  173 (751)
Q Consensus        94 ~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~  173 (751)
                      ..|+++.++.+  ...++|+ .|=.|.+|+++...+..- -...+| ..+..-+..|++..|+|..-++|+-.+..|+|+
T Consensus       165 yhiNSIS~NsD--~Et~lSA-DdLRINLWnlei~d~sFn-IVDIKP-~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIr  239 (433)
T KOG1354|consen  165 YHINSISVNSD--KETFLSA-DDLRINLWNLEIIDQSFN-IVDIKP-ANMEELTEVITSAEFHPHHCNVFVYSSSKGTIR  239 (433)
T ss_pred             eEeeeeeecCc--cceEeec-cceeeeeccccccCCcee-EEEccc-cCHHHHHHHHhhhccCHhHccEEEEecCCCcEE
Confidence            99999999988  6777775 688999999986432110 000011 112223466899999998888999999999999


Q ss_pred             EEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCC-Ccc
Q 004468          174 QHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP-PLT  252 (751)
Q Consensus       174 iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~-~~~  252 (751)
                      +-|+|....|-...       ..+-....+..  ..++..-...|..+.|++. |+||++-.. -+|++||+.|.. ++.
T Consensus       240 LcDmR~~aLCd~hs-------KlfEepedp~~--rsffseiIsSISDvKFs~s-GryilsRDy-ltvk~wD~nme~~pv~  308 (433)
T KOG1354|consen  240 LCDMRQSALCDAHS-------KLFEEPEDPSS--RSFFSEIISSISDVKFSHS-GRYILSRDY-LTVKLWDLNMEAKPVE  308 (433)
T ss_pred             Eeechhhhhhcchh-------hhhccccCCcc--hhhHHHHhhhhhceEEccC-CcEEEEecc-ceeEEEeccccCCcce
Confidence            99999876552110       00000000000  0111112346888999994 788887543 689999997643 332


Q ss_pred             ccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcce
Q 004468          253 SCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRA  315 (751)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~  315 (751)
                      .++.....   -..++.  +.+ ...-..-..++|+-++.++++|+..+.+++|++..+....
T Consensus       309 t~~vh~~l---r~kLc~--lYE-nD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gsk~d  365 (433)
T KOG1354|consen  309 TYPVHEYL---RSKLCS--LYE-NDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGSKED  365 (433)
T ss_pred             EEeehHhH---HHHHHH--Hhh-ccchhheeEEEEcCCcceEecccccceEEEecCCCCccee
Confidence            22110000   000000  000 0011123568899999999999999999999987765443

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=98.93  E-value=2e-08  Score=106.75  Aligned_cols=196  Identities=16%  Similarity=0.228  Sum_probs=141.5

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCce
Q 004468           62 GSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSA  141 (751)
Q Consensus        62 g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~  141 (751)
                      ..+++.|+. ..|.=.+++.|+.+..+ ..-.+.+++|..++.  ..+|++|+.||.|-.||.+..+....    .....
T Consensus       146 cDly~~gsg-~evYRlNLEqGrfL~P~-~~~~~~lN~v~in~~--hgLla~Gt~~g~VEfwDpR~ksrv~~----l~~~~  217 (703)
T KOG2321|consen  146 CDLYLVGSG-SEVYRLNLEQGRFLNPF-ETDSGELNVVSINEE--HGLLACGTEDGVVEFWDPRDKSRVGT----LDAAS  217 (703)
T ss_pred             ccEEEeecC-cceEEEEcccccccccc-ccccccceeeeecCc--cceEEecccCceEEEecchhhhhhee----eeccc
Confidence            344555544 46777799999988888 556689999999999  57999999999999999986432110    01111


Q ss_pred             eecccCC-----ceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCcc
Q 004468          142 LYQCHTR-----RVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTL  216 (751)
Q Consensus       142 ~~~~h~~-----~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  216 (751)
                      ....|.+     .|+++.|+. ++-.++.|..+|.|.|||+|+.+++                        +........
T Consensus       218 ~v~s~pg~~~~~svTal~F~d-~gL~~aVGts~G~v~iyDLRa~~pl------------------------~~kdh~~e~  272 (703)
T KOG2321|consen  218 SVNSHPGGDAAPSVTALKFRD-DGLHVAVGTSTGSVLIYDLRASKPL------------------------LVKDHGYEL  272 (703)
T ss_pred             ccCCCccccccCcceEEEecC-CceeEEeeccCCcEEEEEcccCCce------------------------eecccCCcc
Confidence            1223333     499999986 5788999999999999999998754                        112223456


Q ss_pred             ceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEE
Q 004468          217 SLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLL  296 (751)
Q Consensus       217 ~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~  296 (751)
                      +|..+.|.+.+..--++......++|||..++++...+.                      ....++.+++-|++-++++
T Consensus       273 pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiE----------------------pt~~lND~C~~p~sGm~f~  330 (703)
T KOG2321|consen  273 PIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIE----------------------PTSDLNDFCFVPGSGMFFT  330 (703)
T ss_pred             ceeeecccccCCCceEEecchHHhhhcccccCCceeecc----------------------ccCCcCceeeecCCceEEE
Confidence            888999988655555556667889999999888665432                      1113888999999999999


Q ss_pred             EeCCCcEEEEECCCCC
Q 004468          297 SYSGEHVYLMDVNHAG  312 (751)
Q Consensus       297 ~s~d~~I~lwdl~~~~  312 (751)
                      +-.+..+..|=+...+
T Consensus       331 Ane~~~m~~yyiP~LG  346 (703)
T KOG2321|consen  331 ANESSKMHTYYIPSLG  346 (703)
T ss_pred             ecCCCcceeEEccccC
Confidence            9888777777665543

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=98.91  E-value=1.4e-07  Score=105.02  Aligned_cols=202  Identities=13%  Similarity=0.095  Sum_probs=123.7

Q ss_pred             CcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECC---CcEEEEECCCCCCCCCCCCCCCCceeecccCC
Q 004468           72 THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD---AEVRLFNLSRFSGRGLDDNAITPSALYQCHTR  148 (751)
Q Consensus        72 g~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~D---g~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~  148 (751)
                      ..|.++|.... ....+ ..+...+.+.+|+|+  |++|+.++.+   ..|++||+.++.           ...+..+..
T Consensus       170 ~~l~~~d~~g~-~~~~l-~~~~~~~~~p~~Spd--g~~la~~~~~~~~~~i~v~d~~~g~-----------~~~~~~~~~  234 (417)
T TIGR02800       170 YELQVADYDGA-NPQTI-TRSREPILSPAWSPD--GQKLAYVSFESGKPEIYVQDLATGQ-----------REKVASFPG  234 (417)
T ss_pred             ceEEEEcCCCC-CCEEe-ecCCCceecccCCCC--CCEEEEEEcCCCCcEEEEEECCCCC-----------EEEeecCCC
Confidence            35888887533 34445 456778999999999  7888876543   479999998642           223334556


Q ss_pred             ceeEEEEecCCCCEEEEEeCCC--cEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCC
Q 004468          149 RVKKLAVEVGNPHVVWSASEDG--TLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISST  226 (751)
Q Consensus       149 ~V~~l~~sp~~~~~l~s~s~Dg--~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~  226 (751)
                      .+..++|+|++..++++.+.++  .|.+||+.++...                       .+..   +........|+|+
T Consensus       235 ~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~-----------------------~l~~---~~~~~~~~~~s~d  288 (417)
T TIGR02800       235 MNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT-----------------------RLTN---GPGIDTEPSWSPD  288 (417)
T ss_pred             CccceEECCCCCEEEEEECCCCCccEEEEECCCCCEE-----------------------ECCC---CCCCCCCEEECCC
Confidence            6777999995545555666555  4888888765411                       0100   1112335678995


Q ss_pred             CCcEEEEEeC-CC--eEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCC--
Q 004468          227 RPHLLLVGGS-DA--FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGE--  301 (751)
Q Consensus       227 ~~~~l~sgs~-D~--~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~--  301 (751)
                       ++.|+..+. ++  .|.++|+...+..              .+     ...+   ..+..+.|+|+|++|+.++.++  
T Consensus       289 -g~~l~~~s~~~g~~~iy~~d~~~~~~~--------------~l-----~~~~---~~~~~~~~spdg~~i~~~~~~~~~  345 (417)
T TIGR02800       289 -GKSIAFTSDRGGSPQIYMMDADGGEVR--------------RL-----TFRG---GYNASPSWSPDGDLIAFVHREGGG  345 (417)
T ss_pred             -CCEEEEEECCCCCceEEEEECCCCCEE--------------Ee-----ecCC---CCccCeEECCCCCEEEEEEccCCc
Confidence             666665543 33  5777777643311              00     0001   1256789999999999888765  


Q ss_pred             -cEEEEECCCCCcceeeeecCCCceeEEeCCCCCCcccC
Q 004468          302 -HVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQ  339 (751)
Q Consensus       302 -~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~  339 (751)
                       .|++||+.++.. .... .........|+|+.+.+.+.
T Consensus       346 ~~i~~~d~~~~~~-~~l~-~~~~~~~p~~spdg~~l~~~  382 (417)
T TIGR02800       346 FNIAVMDLDGGGE-RVLT-DTGLDESPSFAPNGRMILYA  382 (417)
T ss_pred             eEEEEEeCCCCCe-EEcc-CCCCCCCceECCCCCEEEEE
Confidence             899999987432 2222 22223445778877666554

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK01029 tolB translocation protein TolB; Provisional

Probab=98.87  E-value=5.2e-07  Score=99.99  Aligned_cols=231  Identities=12%  Similarity=0.079  Sum_probs=128.1

Q ss_pred             EeccCCCcEEEEEECCCCCEEE---EEeCCC--cEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEE-CCC-
Q 004468           45 ELEGHQGCVNAISWNSKGSLLI---SGSDDT--HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGA-GDA-  117 (751)
Q Consensus        45 ~L~gH~~~V~~l~~s~dg~~La---Sgs~Dg--~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs-~Dg-  117 (751)
                      .|......+..=.|+|||+.++   +...++  .|.+.++.+++... + ....+.....+|+|+  |+.|+..+ .+| 
T Consensus       179 ~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~-l-t~~~g~~~~p~wSPD--G~~Laf~s~~~g~  254 (428)
T PRK01029        179 PLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK-I-LALQGNQLMPTFSPR--KKLLAFISDRYGN  254 (428)
T ss_pred             EcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE-e-ecCCCCccceEECCC--CCEEEEEECCCCC
Confidence            3444555666779999997532   333343  47777887665432 2 334556677899999  77776544 223 


Q ss_pred             ---cEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccc
Q 004468          118 ---EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECR  194 (751)
Q Consensus       118 ---~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~  194 (751)
                         .+.+|++..+...       .+......+...+...+|+|++..++.+...+|...+|.+.....-        ...
T Consensus       255 ~di~~~~~~~~~g~~g-------~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g--------~~~  319 (428)
T PRK01029        255 PDLFIQSFSLETGAIG-------KPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEG--------QSP  319 (428)
T ss_pred             cceeEEEeecccCCCC-------cceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccc--------cce
Confidence               3444676542110       1222333333445678999954334444446776666654321000        000


Q ss_pred             eEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCC---CeEEEEeCCCCCCccccCCCCCCCCccccccccc
Q 004468          195 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD---AFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMH  271 (751)
Q Consensus       195 ~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D---~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (751)
                      ..           +..   ....+....|+|+ ++.|+..+.+   ..|.+||+.+++...              +.   
T Consensus       320 ~~-----------lt~---~~~~~~~p~wSPD-G~~Laf~~~~~g~~~I~v~dl~~g~~~~--------------Lt---  367 (428)
T PRK01029        320 RL-----------LTK---KYRNSSCPAWSPD-GKKIAFCSVIKGVRQICVYDLATGRDYQ--------------LT---  367 (428)
T ss_pred             EE-----------ecc---CCCCccceeECCC-CCEEEEEEcCCCCcEEEEEECCCCCeEE--------------cc---
Confidence            00           110   1224567789995 6766655443   468999987654211              00   


Q ss_pred             cccCCccccceEEEEEcCCCCEEEEEeC---CCcEEEEECCCCCcceeeeecCCCceeEEeCCC
Q 004468          272 LSEHGRSSLHLTHVTFSPNGEEVLLSYS---GEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPT  332 (751)
Q Consensus       272 ~~~~g~~~~~vt~v~fspdg~~Ll~~s~---d~~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp~  332 (751)
                         .+  ...+....|+|||++|+....   ...|++||+.++....+ ..........+|+|.
T Consensus       368 ---~~--~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~L-t~~~g~~~~p~Ws~~  425 (428)
T PRK01029        368 ---TS--PENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKI-VIGSGEKRFPSWGAF  425 (428)
T ss_pred             ---CC--CCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEe-ecCCCcccCceecCC
Confidence               00  112567899999998886543   46799999988653333 223333445666664

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=98.87  E-value=2.7e-08  Score=99.74  Aligned_cols=245  Identities=18%  Similarity=0.268  Sum_probs=152.0

Q ss_pred             hccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeC-CCC---------------------------------
Q 004468           37 VRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSY-SSR---------------------------------   82 (751)
Q Consensus        37 i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~-~~~---------------------------------   82 (751)
                      ..++...+....|...|..+-|+...+++++.+.|+.+. |.. +.+                                 
T Consensus       101 fnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~-~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~  179 (404)
T KOG1409|consen  101 FNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFA-WHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITM  179 (404)
T ss_pred             hhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceE-EEeeccCCcccceEeeccCCCCceeeEEEEecccccceEE
Confidence            456667777788999999999998888899888876543 321 111                                 


Q ss_pred             --------eEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEE
Q 004468           83 --------KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLA  154 (751)
Q Consensus        83 --------~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  154 (751)
                              .++.++ .+|.+.|.+++|.|.  ..+|.+|+.|..|.+||+....+         ....+.+|.+.|..+.
T Consensus       180 lr~~~~~~~~i~~~-~~h~~~~~~l~Wd~~--~~~LfSg~~d~~vi~wdigg~~g---------~~~el~gh~~kV~~l~  247 (404)
T KOG1409|consen  180 LKLEQNGCQLITTF-NGHTGEVTCLKWDPG--QRLLFSGASDHSVIMWDIGGRKG---------TAYELQGHNDKVQALS  247 (404)
T ss_pred             EEEeecCCceEEEE-cCcccceEEEEEcCC--CcEEEeccccCceEEEeccCCcc---------eeeeeccchhhhhhhh
Confidence                    122333 689999999999999  78999999999999999986543         3567889999999998


Q ss_pred             EecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccc----eEEEecccCc---eecccCC-CCCccceEEEEEeCC
Q 004468          155 VEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECR----NILLDLRCGA---KRSLADP-PKQTLSLKSCDISST  226 (751)
Q Consensus       155 ~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~----~~l~~~~~~~---~~~~~~~-~~~~~~v~~i~~sp~  226 (751)
                      ..+ --..+.++++||.|.+||+.......+.......|.    -.+|+.+.-.   ...+... -.+.+...+..-+. 
T Consensus       248 ~~~-~t~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h~crkcg~avc~~c~s-  325 (404)
T KOG1409|consen  248 YAQ-HTRQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQHHCRKCGKAVCGKCSS-  325 (404)
T ss_pred             hhh-hheeeeeccCCCeEEEEeccceeecCccccccchhhhhCchHHHHHHHHHhhhhhhhhhhhhhhhhhhcCccccc-
Confidence            877 557888999999999999987654322222222221    1122221100   0000000 00111111111111 


Q ss_pred             CCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEE
Q 004468          227 RPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLM  306 (751)
Q Consensus       227 ~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lw  306 (751)
                      +.....+-+..-.+|+-|.-.......      ++      .|.-.....|++  |+.+.+...-..|++++.|..|+||
T Consensus       326 ~~~~~p~mg~e~~vR~~~~c~~~i~~~------~~------t~LA~phei~tg--ItamhlqetlglLvTsG~~Rvi~iw  391 (404)
T KOG1409|consen  326 NRSSYPTMGFEFSVRVCDSCYPTIKDE------ER------TPLAIPHEIKTG--ITAMHLQETLGLLVTSGTDRVIKIW  391 (404)
T ss_pred             CccccccccceeEEEEecccchhhhcC------CC------Cccccccccccc--eeEEEhhhhccceeecCCceEEEEE
Confidence            122333334444555555432110000      00      011111223444  9999999998899999999999999


Q ss_pred             ECCC
Q 004468          307 DVNH  310 (751)
Q Consensus       307 dl~~  310 (751)
                      |+..
T Consensus       392 d~~~  395 (404)
T KOG1409|consen  392 DVRS  395 (404)
T ss_pred             echh
Confidence            9886

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=98.86  E-value=2e-07  Score=100.80  Aligned_cols=263  Identities=13%  Similarity=0.145  Sum_probs=148.6

Q ss_pred             hccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEE-EC
Q 004468           37 VRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSG-AG  115 (751)
Q Consensus        37 i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sg-s~  115 (751)
                      ..+.+.+.++......-..+.|+|||+++.+++.||.|.++|+.+++.+.++..|  ....+++++|+  |++++++ ..
T Consensus        23 ~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G--~~~~~i~~s~D--G~~~~v~n~~   98 (369)
T PF02239_consen   23 GATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVG--GNPRGIAVSPD--GKYVYVANYE   98 (369)
T ss_dssp             TTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-S--SEEEEEEE--T--TTEEEEEEEE
T ss_pred             CCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecC--CCcceEEEcCC--CCEEEEEecC
Confidence            4556778888766554455789999999999999999999999999999998443  44788999999  7887755 57


Q ss_pred             CCcEEEEECCCCCCCCCCCCCCCCceeecc-------cCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCC
Q 004468          116 DAEVRLFNLSRFSGRGLDDNAITPSALYQC-------HTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGS  188 (751)
Q Consensus       116 Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~-------h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~  188 (751)
                      ++.|.|+|..+.          ++++.+..       ...+|..|..+|..+.++++--+-+.|.+.|.......     
T Consensus        99 ~~~v~v~D~~tl----------e~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~-----  163 (369)
T PF02239_consen   99 PGTVSVIDAETL----------EPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNL-----  163 (369)
T ss_dssp             TTEEEEEETTT------------EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCE-----
T ss_pred             CCceeEeccccc----------cceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecccccc-----
Confidence            899999999864          44555432       24567788888854445545555588888887765321     


Q ss_pred             CCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEE-EeCCCeEEEEeCCCCCCccccCCCCCC-------
Q 004468          189 SHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLV-GGSDAFARLYDRRMLPPLTSCQKRMSP-------  260 (751)
Q Consensus       189 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~s-gs~D~~IriwD~~~~~~~~~~~~~~~~-------  260 (751)
                           ......              .........|+|+ ++++++ ...+..|-++|..+.+.+..+.....+       
T Consensus       164 -----~~~~i~--------------~g~~~~D~~~dpd-gry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~  223 (369)
T PF02239_consen  164 -----KVTTIK--------------VGRFPHDGGFDPD-GRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGAN  223 (369)
T ss_dssp             -----EEEEEE----------------TTEEEEEE-TT-SSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEE
T ss_pred             -----ceeeec--------------ccccccccccCcc-cceeeecccccceeEEEeeccceEEEEeecccccccccccc
Confidence                 001111              1234567889995 565554 556778889998877644333221111       


Q ss_pred             ---CCcccccccccc--------c-------c-C--------CccccceEEEEEcCCCCEEEEE----eCCCcEEEEECC
Q 004468          261 ---PPCVNYFCPMHL--------S-------E-H--------GRSSLHLTHVTFSPNGEEVLLS----YSGEHVYLMDVN  309 (751)
Q Consensus       261 ---~~~~~~~~~~~~--------~-------~-~--------g~~~~~vt~v~fspdg~~Ll~~----s~d~~I~lwdl~  309 (751)
                         +..-..+...+.        .       . .        ...+.+ ..+..+|++++|.+.    ...++|.++|.+
T Consensus       224 ~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~  302 (369)
T PF02239_consen  224 FPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKK  302 (369)
T ss_dssp             EEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECC
T ss_pred             ccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECc
Confidence               000000000000        0       0 0        001112 567889999999998    335899999999


Q ss_pred             CCCcceee-eecCCCceeEEeCCCCCCcccC
Q 004468          310 HAGGRAMR-YTVGDASKIMSFTPTLNGLELQ  339 (751)
Q Consensus       310 ~~~~~~~~-~~~~~~~~~~~~sp~~~~~~~~  339 (751)
                      +.+..... ...+...-.+.|+++...+-++
T Consensus       303 tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS  333 (369)
T PF02239_consen  303 TLKVVKTITPGPGKRVVHMEFNPDGKEVWVS  333 (369)
T ss_dssp             GTEEEE-HHHHHT--EEEEEE-TTSSEEEEE
T ss_pred             CcceeEEEeccCCCcEeccEECCCCCEEEEE
Confidence            95321111 1122335567888887765544

...

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=98.86  E-value=1.7e-06  Score=92.08  Aligned_cols=218  Identities=11%  Similarity=0.150  Sum_probs=131.3

Q ss_pred             EEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECC-----------CcEEE
Q 004468           53 VNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD-----------AEVRL  121 (751)
Q Consensus        53 V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~D-----------g~V~v  121 (751)
                      =+-+.|||.|+||+|-..-| |.+|--.+...++.+  .|. .|.-+.|||.  .++|+|=|..           ..++|
T Consensus       213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF--~Hp-~Vq~idfSP~--EkYLVT~s~~p~~~~~~d~e~~~l~I  286 (698)
T KOG2314|consen  213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRF--YHP-GVQFIDFSPN--EKYLVTYSPEPIIVEEDDNEGQQLII  286 (698)
T ss_pred             eeeEEecCCceEEEEEeccc-eeeecCccHHHHHhc--cCC-CceeeecCCc--cceEEEecCCccccCcccCCCceEEE
Confidence            35789999999999998765 899998877777777  465 4899999999  7999987632           57899


Q ss_pred             EECCCCCCCCCCCCCCCCceeecc--cCCcee-EEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEE
Q 004468          122 FNLSRFSGRGLDDNAITPSALYQC--HTRRVK-KLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILL  198 (751)
Q Consensus       122 wd~~~~~~~~~~~~~~~~~~~~~~--h~~~V~-~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~  198 (751)
                      ||+.++.          ..+.|..  ....+. -..||. +.+++|.-.. .+|.||+...-.               ++
T Consensus       287 WDI~tG~----------lkrsF~~~~~~~~~WP~frWS~-DdKy~Arm~~-~sisIyEtpsf~---------------ll  339 (698)
T KOG2314|consen  287 WDIATGL----------LKRSFPVIKSPYLKWPIFRWSH-DDKYFARMTG-NSISIYETPSFM---------------LL  339 (698)
T ss_pred             EEccccc----------hhcceeccCCCccccceEEecc-CCceeEEecc-ceEEEEecCcee---------------ee
Confidence            9999763          2344433  222233 347888 5578876666 578888765422               11


Q ss_pred             ecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeC-----CCeEEEEeCCCCCCccccCCCCCCCCccccccccccc
Q 004468          199 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGS-----DAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLS  273 (751)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~-----D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (751)
                      +.+          .-....|....|+|. +.+||-=..     -..+-|-.+-+.+.+..                ..+.
T Consensus       340 d~K----------slki~gIr~FswsP~-~~llAYwtpe~~~~parvtL~evPs~~~iRt----------------~nlf  392 (698)
T KOG2314|consen  340 DKK----------SLKISGIRDFSWSPT-SNLLAYWTPETNNIPARVTLMEVPSKREIRT----------------KNLF  392 (698)
T ss_pred             ccc----------ccCCccccCcccCCC-cceEEEEcccccCCcceEEEEecCccceeee----------------ccce
Confidence            111          112346778889994 444432110     01122222221111110                0000


Q ss_pred             cCCccccceEEEEEcCCCCEEEEEeC----------CCcEEEEECCCCCcceeeeecCCCceeEEeCCCCCC
Q 004468          274 EHGRSSLHLTHVTFSPNGEEVLLSYS----------GEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNG  335 (751)
Q Consensus       274 ~~g~~~~~vt~v~fspdg~~Ll~~s~----------d~~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp~~~~  335 (751)
                           +..=..+.|-.+|.+|++--.          -..+-||.++....+.......+.+-.++|-|.++.
T Consensus       393 -----nVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdk  459 (698)
T KOG2314|consen  393 -----NVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDK  459 (698)
T ss_pred             -----eeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCe
Confidence                 001134677788888876532          124677777775555555566677777778776543

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=98.85  E-value=5.5e-08  Score=97.58  Aligned_cols=244  Identities=19%  Similarity=0.210  Sum_probs=172.2

Q ss_pred             ccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEe-CCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECC
Q 004468           38 RRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWS-YSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD  116 (751)
Q Consensus        38 ~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd-~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~D  116 (751)
                      .+..+.+.++||.+.|++...-|...-+.+.+.|.+++||- ...++.-..+...-..++.++.+.++  -..|+.|-..
T Consensus        12 ~kp~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e--~~~L~vg~~n   89 (404)
T KOG1409|consen   12 KKPELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSE--SRRLYVGQDN   89 (404)
T ss_pred             cchhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeecc--ceEEEEEEec
Confidence            34456677899999999999999888899999999999995 34555544554445678999999998  4888889889


Q ss_pred             CcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCC-----CC-C
Q 004468          117 AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAG-----SS-H  190 (751)
Q Consensus       117 g~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~-----~~-~  190 (751)
                      |+|.-+.+..--      +....++.+..|..+|..+-|+- ....+++++.|..+.-.-.+.+..+....     .. .
T Consensus        90 gtvtefs~sedf------nkm~~~r~~~~h~~~v~~~if~~-~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~  162 (404)
T KOG1409|consen   90 GTVTEFALSEDF------NKMTFLKDYLAHQARVSAIVFSL-THEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQ  162 (404)
T ss_pred             ceEEEEEhhhhh------hhcchhhhhhhhhcceeeEEecC-CceeEEEeccccceEEEeeccCCcccceEeeccCCCCc
Confidence            999888775311      11244677788999999999987 56788899999988655555554331000     00 0


Q ss_pred             CccceEEEecccC----------ceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCC
Q 004468          191 QECRNILLDLRCG----------AKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSP  260 (751)
Q Consensus       191 ~~~~~~l~~~~~~----------~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~  260 (751)
                      .+....+.+-..+          ....+....+|...+++++|.|. ...+.+|..|..|.+||+--.+...        
T Consensus       163 ~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~-~~~LfSg~~d~~vi~wdigg~~g~~--------  233 (404)
T KOG1409|consen  163 FDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPG-QRLLFSGASDHSVIMWDIGGRKGTA--------  233 (404)
T ss_pred             eeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCC-CcEEEeccccCceEEEeccCCccee--------
Confidence            0000111111222          22233445678899999999994 7899999999999999996443211        


Q ss_pred             CCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 004468          261 PPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (751)
Q Consensus       261 ~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~  311 (751)
                           +      ...+|.. .|..+..-+--+.|++++.||.|-+||++..
T Consensus       234 -----~------el~gh~~-kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~  272 (404)
T KOG1409|consen  234 -----Y------ELQGHND-KVQALSYAQHTRQLISCGEDGGIVVWNMNVK  272 (404)
T ss_pred             -----e------eeccchh-hhhhhhhhhhheeeeeccCCCeEEEEeccce
Confidence                 0      1133443 4777777778889999999999999999984

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=98.83  E-value=1.8e-08  Score=119.16  Aligned_cols=194  Identities=14%  Similarity=0.213  Sum_probs=155.5

Q ss_pred             eccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECC
Q 004468           46 LEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLS  125 (751)
Q Consensus        46 L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~  125 (751)
                      ++-|-..|.++.=+|...+.+||+.||.|++|....+..+..+.++-...|+.+.|+..  |+.+..+..||.+.+|.+.
T Consensus      2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~q--Gnk~~i~d~dg~l~l~q~~ 2281 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQ--GNKFGIVDGDGDLSLWQAS 2281 (2439)
T ss_pred             eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhccc--CCceeeeccCCceeecccC
Confidence            34455678888888889999999999999999999999888887777799999999998  8899999999999999998


Q ss_pred             CCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEe---CCCcEEEEecCCCCCCCCCCCCCCccceEEEeccc
Q 004468          126 RFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSAS---EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRC  202 (751)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s---~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~  202 (751)
                      .           ++....+||+.......|-.   .++++++   .++.+.+||.--....            .+     
T Consensus      2282 p-----------k~~~s~qchnk~~~Df~Fi~---s~~~tag~s~d~~n~~lwDtl~~~~~------------s~----- 2330 (2439)
T KOG1064|consen 2282 P-----------KPYTSWQCHNKALSDFRFIG---SLLATAGRSSDNRNVCLWDTLLPPMN------------SL----- 2330 (2439)
T ss_pred             C-----------cceeccccCCccccceeeee---hhhhccccCCCCCcccchhcccCccc------------ce-----
Confidence            3           67888999999999999964   5677764   4788999997654311            00     


Q ss_pred             CceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccce
Q 004468          203 GAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHL  282 (751)
Q Consensus       203 ~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v  282 (751)
                           +.  ..|...++++++-| ...+|++|+.+|.|++||++-.+....++                          .
T Consensus      2331 -----v~--~~H~~gaT~l~~~P-~~qllisggr~G~v~l~D~rqrql~h~~~--------------------------~ 2376 (2439)
T KOG1064|consen 2331 -----VH--TCHDGGATVLAYAP-KHQLLISGGRKGEVCLFDIRQRQLRHTFQ--------------------------A 2376 (2439)
T ss_pred             -----ee--eecCCCceEEEEcC-cceEEEecCCcCcEEEeehHHHHHHHHhh--------------------------h
Confidence                 11  23778899999999 47899999999999999998654322211                          1


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 004468          283 THVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (751)
Q Consensus       283 t~v~fspdg~~Ll~~s~d~~I~lwdl~~~  311 (751)
                          +. ...++++++..|.|+||++...
T Consensus      2377 ----~~-~~~~f~~~ss~g~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2377 ----LD-TREYFVTGSSEGNIKIWRLSEF 2400 (2439)
T ss_pred             ----hh-hhheeeccCcccceEEEEcccc
Confidence                33 5567899999999999999884

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=98.81  E-value=1.3e-06  Score=93.43  Aligned_cols=220  Identities=12%  Similarity=0.199  Sum_probs=131.6

Q ss_pred             cEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEE-----ECC-----CcEEE
Q 004468           52 CVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSG-----AGD-----AEVRL  121 (751)
Q Consensus        52 ~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sg-----s~D-----g~V~v  121 (751)
                      .++..+++++|+++|-+. +..++|++..+...+.+...   ..++++.|+|.  |.+|.|=     ..|     -.+++
T Consensus        36 ~~~v~~~S~~G~lfA~~~-~~~v~i~~~~~~~~~lt~~~---~~~~~L~fSP~--g~yL~T~e~~~i~~~~~~~~pn~~v  109 (566)
T KOG2315|consen   36 PCNVFAYSNNGRLFAYSD-NQVVKVFEIATLKVVLCVEL---KKTYDLLFSPK--GNYLLTWEPWAIYGPKNASNPNVLV  109 (566)
T ss_pred             cceeEEEcCCCcEEEEEc-CCeEEEEEccCCcEEEEecc---ceeeeeeeccc--ccccccccccccccCCCCCCCceee
Confidence            367888999999888775 45899999988865555422   27999999999  7777642     223     34669


Q ss_pred             EECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecc
Q 004468          122 FNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLR  201 (751)
Q Consensus       122 wd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~  201 (751)
                      |++.+.          .....+..-...-++..|+.++ .+ +.=--.+.+.+|++...+..                  
T Consensus       110 ~~vet~----------~~~s~~q~k~Q~~W~~qfs~dE-sl-~arlv~nev~f~~~~~f~~~------------------  159 (566)
T KOG2315|consen  110 YNVETG----------VQRSQIQKKMQNGWVPQFSIDE-SL-AARLVSNEVQFYDLGSFKTI------------------  159 (566)
T ss_pred             eeeccc----------eehhheehhhhcCcccccccch-hh-hhhhhcceEEEEecCCccce------------------
Confidence            998863          1122222222222578888744 32 22223467889998764311                  


Q ss_pred             cCceecccCCCCCccceEEEEEeCC-CCcEEEE-----EeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccC
Q 004468          202 CGAKRSLADPPKQTLSLKSCDISST-RPHLLLV-----GGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEH  275 (751)
Q Consensus       202 ~~~~~~~~~~~~~~~~v~~i~~sp~-~~~~l~s-----gs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (751)
                              ...-+...++.+.++|. .+..+++     ++.-+.||||..........       ..+...|.       
T Consensus       160 --------~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~-------~a~ksFFk-------  217 (566)
T KOG2315|consen  160 --------QHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQP-------VANKSFFK-------  217 (566)
T ss_pred             --------eeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccch-------hhhccccc-------
Confidence                    01113456778888884 2344443     35667899998763221111       11111111       


Q ss_pred             CccccceEEEEEcCCCCEEEE-EeC--C---------CcEEEEECCCCCcceeeeecCCCceeEEeCCCCC
Q 004468          276 GRSSLHLTHVTFSPNGEEVLL-SYS--G---------EHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLN  334 (751)
Q Consensus       276 g~~~~~vt~v~fspdg~~Ll~-~s~--d---------~~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp~~~  334 (751)
                        .+  =-.+.|++-|.-|++ .+.  |         .++|+.+++ +....+.....+++..++|+|+..
T Consensus       218 --ad--kvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~-g~s~~V~L~k~GPVhdv~W~~s~~  283 (566)
T KOG2315|consen  218 --AD--KVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQ-GESVSVPLLKEGPVHDVTWSPSGR  283 (566)
T ss_pred             --cc--eeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEec-CceEEEecCCCCCceEEEECCCCC
Confidence              01  124678877764332 222  3         479999998 344555666678999999998754

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.75  E-value=3.2e-08  Score=107.73  Aligned_cols=240  Identities=15%  Similarity=0.160  Sum_probs=160.0

Q ss_pred             CCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCC-eEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCC
Q 004468           50 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSR-KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFS  128 (751)
Q Consensus        50 ~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~-~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~  128 (751)
                      .+.++++..+|.|+-+|.++.-|.+. -|+... ....-+...-.=.|-.+.|+|...-.+-+..-....-.+|++...+
T Consensus        24 ~~~~~a~si~p~grdi~lAsr~gl~i-~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss  102 (1081)
T KOG0309|consen   24 DGGFNAVSINPSGRDIVLASRQGLYI-IDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSS  102 (1081)
T ss_pred             cCcccceeeccccchhhhhhhcCeEE-EeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCC
Confidence            46788999999999999998877544 465432 2222221111234778889987533344433344566789998654


Q ss_pred             CCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecc
Q 004468          129 GRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSL  208 (751)
Q Consensus       129 ~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  208 (751)
                      ...       .-..+.+|+..|+.+.|+|..+.++++++-|-.+..||+|......          . .+.         
T Consensus       103 ~~a-------Ief~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~----------y-s~~---------  155 (1081)
T KOG0309|consen  103 SNA-------IEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPF----------Y-STS---------  155 (1081)
T ss_pred             ccc-------eEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcce----------e-eee---------
Confidence            432       2456789999999999999999999999999999999999986331          0 010         


Q ss_pred             cCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEc
Q 004468          209 ADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFS  288 (751)
Q Consensus       209 ~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fs  288 (751)
                          .-......++|+-.+++.+| .+....|++||.|.+...          .|..         .+|.. .|+++.|.
T Consensus       156 ----~w~s~asqVkwnyk~p~vla-sshg~~i~vwd~r~gs~p----------l~s~---------K~~vs-~vn~~~fn  210 (1081)
T KOG0309|consen  156 ----SWRSAASQVKWNYKDPNVLA-SSHGNDIFVWDLRKGSTP----------LCSL---------KGHVS-SVNSIDFN  210 (1081)
T ss_pred             ----cccccCceeeecccCcchhh-hccCCceEEEeccCCCcc----------eEEe---------cccce-eeehHHHh
Confidence                11234556788887666555 466778999999976521          1110         22333 37777777


Q ss_pred             C-CCCEEEEEeCCCcEEEEECCCCCcce-eeeecCCCceeEEeCCCCCCcccCCCc
Q 004468          289 P-NGEEVLLSYSGEHVYLMDVNHAGGRA-MRYTVGDASKIMSFTPTLNGLELQPPI  342 (751)
Q Consensus       289 p-dg~~Ll~~s~d~~I~lwdl~~~~~~~-~~~~~~~~~~~~~~sp~~~~~~~~~~~  342 (751)
                      . ....+++++.|++|+.||........ .......++...+|-|...+.-..+..
T Consensus       211 r~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~  266 (1081)
T KOG0309|consen  211 RFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMV  266 (1081)
T ss_pred             hhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEecccc
Confidence            5 44568899999999999998765333 334445566667777777776555443

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.74  E-value=2e-07  Score=92.16  Aligned_cols=237  Identities=14%  Similarity=0.220  Sum_probs=148.6

Q ss_pred             CCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCe-EEE----EecccCC------------cceEEEEEecCCCCcEEE
Q 004468           49 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK-LLH----SIETGHS------------ANVFCTKFVPETSDELVV  111 (751)
Q Consensus        49 H~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~-~~~----~l~~~h~------------~~V~~v~fsp~s~~~~l~  111 (751)
                      ..+.|+++.|...|.+||+|..-|.|.++.-.... +..    .+ ++|.            ..|..+.|..+++-..++
T Consensus        25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teF-Qshe~EFDYLkSleieEKin~I~w~~~t~r~hFL  103 (460)
T COG5170          25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEF-QSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFL  103 (460)
T ss_pred             ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhh-cccccchhhhhhccHHHHhhheeeecCCCcceEE
Confidence            35679999999999999999999999999754321 211    23 4553            458899999886555667


Q ss_pred             EEECCCcEEEEECCCCCCCCCCCC------------------C--------------CCCceee-cccCCceeEEEEecC
Q 004468          112 SGAGDAEVRLFNLSRFSGRGLDDN------------------A--------------ITPSALY-QCHTRRVKKLAVEVG  158 (751)
Q Consensus       112 sgs~Dg~V~vwd~~~~~~~~~~~~------------------~--------------~~~~~~~-~~h~~~V~~l~~sp~  158 (751)
                      ....|.+|++|-+....-+.+..+                  +              ..+.+.+ ..|.-.+.++.|+. 
T Consensus       104 lstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~Ns-  182 (460)
T COG5170         104 LSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNS-  182 (460)
T ss_pred             EecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecC-
Confidence            777899999999875321111000                  0              0112222 56777899999987 


Q ss_pred             CCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCC
Q 004468          159 NPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDA  238 (751)
Q Consensus       159 ~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~  238 (751)
                      +...++ .+.|=.|-+|++.-...+          .+ +.+......      ..-..-|++..|+|.....+.-.+..|
T Consensus       183 D~et~l-SaDdLrINLWnl~i~D~s----------Fn-IVDiKP~nm------eeLteVItSaeFhp~~cn~fmYSsSkG  244 (460)
T COG5170         183 DKETLL-SADDLRINLWNLEIIDGS----------FN-IVDIKPHNM------EELTEVITSAEFHPEMCNVFMYSSSKG  244 (460)
T ss_pred             chheee-eccceeeeeccccccCCc----------eE-EEeccCccH------HHHHHHHhhcccCHhHcceEEEecCCC
Confidence            445554 456788999998765422          11 222221110      012345788899998778888889999


Q ss_pred             eEEEEeCCCCCCcc---ccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcc
Q 004468          239 FARLYDRRMLPPLT---SCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGR  314 (751)
Q Consensus       239 ~IriwD~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~  314 (751)
                      .|++-|+|......   ++......+..+..|       .+- -..|..+.|+++|+++++-.. -+|+|||++..+.+
T Consensus       245 ~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff-------~ei-vsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~p  314 (460)
T COG5170         245 EIKLNDLRQSALCDNSKKLFELTIDGVDVDFF-------EEI-VSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNP  314 (460)
T ss_pred             cEEehhhhhhhhccCchhhhhhccCcccchhH-------HHH-hhhhcceEEcCCCcEEEEecc-ceEEEEecccccCC
Confidence            99999998432110   000000000001111       001 114889999999999876544 59999999986533

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.74  E-value=2e-06  Score=83.88  Aligned_cols=211  Identities=13%  Similarity=0.056  Sum_probs=139.8

Q ss_pred             EEEECC-----CCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCC
Q 004468           55 AISWNS-----KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSG  129 (751)
Q Consensus        55 ~l~~s~-----dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~  129 (751)
                      .|.|-|     ...+||.|+.-|...+|.+.+......+...|...|.-++=.-+. -.-+..++.|.++++.++.....
T Consensus        72 g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~-~~~~~i~sndht~k~~~~~~~s~  150 (344)
T KOG4532|consen   72 GMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDL-KFPLNIASNDHTGKTMVVSGDSN  150 (344)
T ss_pred             cccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhhhccc-ccceeeccCCcceeEEEEecCcc
Confidence            456666     345899999999999999987655444434555544443322221 23466678999999999986422


Q ss_pred             CCCCCCCCCCceeecccCC--ceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceec
Q 004468          130 RGLDDNAITPSALYQCHTR--RVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRS  207 (751)
Q Consensus       130 ~~~~~~~~~~~~~~~~h~~--~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  207 (751)
                                  .+.-|..  .+.++++++ ++.++++.+....|..|.+......         ..+ +.         
T Consensus       151 ------------~~~~h~~~~~~ns~~~sn-d~~~~~~Vgds~~Vf~y~id~~sey---------~~~-~~---------  198 (344)
T KOG4532|consen  151 ------------KFAVHNQNLTQNSLHYSN-DPSWGSSVGDSRRVFRYAIDDESEY---------IEN-IY---------  198 (344)
T ss_pred             ------------cceeeccccceeeeEEcC-CCceEEEecCCCcceEEEeCCccce---------eee-eE---------
Confidence                        1222333  378999999 7789999999999999988764321         000 00         


Q ss_pred             ccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEE
Q 004468          208 LADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTF  287 (751)
Q Consensus       208 ~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~f  287 (751)
                         .......-.+.+|+.. ...+|++..||++.|||+|.........                ...+.|+.+.+..+.|
T Consensus       199 ---~a~t~D~gF~~S~s~~-~~~FAv~~Qdg~~~I~DVR~~~tpm~~~----------------sstrp~hnGa~R~c~F  258 (344)
T KOG4532|consen  199 ---EAPTSDHGFYNSFSEN-DLQFAVVFQDGTCAIYDVRNMATPMAEI----------------SSTRPHHNGAFRVCRF  258 (344)
T ss_pred             ---ecccCCCceeeeeccC-cceEEEEecCCcEEEEEecccccchhhh----------------cccCCCCCCceEEEEe
Confidence               0012234457788884 6899999999999999999764221110                0112344557999999


Q ss_pred             cCCCC--EEEEEeCCCcEEEEECCCCCcceeee
Q 004468          288 SPNGE--EVLLSYSGEHVYLMDVNHAGGRAMRY  318 (751)
Q Consensus       288 spdg~--~Ll~~s~d~~I~lwdl~~~~~~~~~~  318 (751)
                      ++-|.  .|+.+-.-+.+.|-|+++.....+..
T Consensus       259 sl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~  291 (344)
T KOG4532|consen  259 SLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIV  291 (344)
T ss_pred             cCCCcceEEEEecCcceEEEEEcccCceeeEEe
Confidence            98764  46666667899999999976555444

>PRK00178 tolB translocation protein TolB; Provisional

Probab=98.70  E-value=1.2e-06  Score=97.71  Aligned_cols=202  Identities=10%  Similarity=0.055  Sum_probs=119.8

Q ss_pred             cEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECC---CcEEEEECCCCCCCCCCCCCCCCceeecccCCc
Q 004468           73 HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD---AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRR  149 (751)
Q Consensus        73 ~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~D---g~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~  149 (751)
                      .|.++|...+. ...+ ..+...+...+|+|+  |+.|+..+.+   ..|.+||+.++..           ..+....+.
T Consensus       180 ~l~~~d~~g~~-~~~l-~~~~~~~~~p~wSpD--G~~la~~s~~~~~~~l~~~~l~~g~~-----------~~l~~~~g~  244 (430)
T PRK00178        180 TLQRSDYDGAR-AVTL-LQSREPILSPRWSPD--GKRIAYVSFEQKRPRIFVQNLDTGRR-----------EQITNFEGL  244 (430)
T ss_pred             EEEEECCCCCC-ceEE-ecCCCceeeeeECCC--CCEEEEEEcCCCCCEEEEEECCCCCE-----------EEccCCCCC
Confidence            47777876443 3445 467788999999999  7887766543   3688999986421           222223344


Q ss_pred             eeEEEEecCCCCEEEEEeCCC--cEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCC
Q 004468          150 VKKLAVEVGNPHVVWSASEDG--TLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR  227 (751)
Q Consensus       150 V~~l~~sp~~~~~l~s~s~Dg--~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~  227 (751)
                      +...+|+|++..++++.+.+|  .|.+||+.++...                       .+..   +........|+|+ 
T Consensus       245 ~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~-----------------------~lt~---~~~~~~~~~~spD-  297 (430)
T PRK00178        245 NGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS-----------------------RVTN---HPAIDTEPFWGKD-  297 (430)
T ss_pred             cCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeE-----------------------Eccc---CCCCcCCeEECCC-
Confidence            556899995544555666666  5777788775421                       0100   1123445689996 


Q ss_pred             CcEEEEEe-CCC--eEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCC-C--
Q 004468          228 PHLLLVGG-SDA--FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG-E--  301 (751)
Q Consensus       228 ~~~l~sgs-~D~--~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d-~--  301 (751)
                      ++.|+..+ .++  .|.++|+..++...              +.   .  .+.   ......|+|||++|+..+.. +  
T Consensus       298 g~~i~f~s~~~g~~~iy~~d~~~g~~~~--------------lt---~--~~~---~~~~~~~Spdg~~i~~~~~~~~~~  355 (430)
T PRK00178        298 GRTLYFTSDRGGKPQIYKVNVNGGRAER--------------VT---F--VGN---YNARPRLSADGKTLVMVHRQDGNF  355 (430)
T ss_pred             CCEEEEEECCCCCceEEEEECCCCCEEE--------------ee---c--CCC---CccceEECCCCCEEEEEEccCCce
Confidence            55554444 333  56667765543110              00   0  011   13457899999999877653 2  


Q ss_pred             cEEEEECCCCCcceeeeecCCCceeEEeCCCCCCcccCC
Q 004468          302 HVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQP  340 (751)
Q Consensus       302 ~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~  340 (751)
                      .|++||+.++....+ . .........|+|+...+.+..
T Consensus       356 ~l~~~dl~tg~~~~l-t-~~~~~~~p~~spdg~~i~~~~  392 (430)
T PRK00178        356 HVAAQDLQRGSVRIL-T-DTSLDESPSVAPNGTMLIYAT  392 (430)
T ss_pred             EEEEEECCCCCEEEc-c-CCCCCCCceECCCCCEEEEEE
Confidence            689999988643222 2 222333557888877766553

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.68  E-value=9e-08  Score=100.89  Aligned_cols=172  Identities=19%  Similarity=0.250  Sum_probs=124.1

Q ss_pred             EEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCC-------CeEEEEecccCCcceEEEEEecCCCCcEEEEEECC
Q 004468           44 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSS-------RKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD  116 (751)
Q Consensus        44 ~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~-------~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~D  116 (751)
                      ..+.||+..|..+.--.+.+-++++|.|++|++|.++.       ..+..++ +.|+.+|.++.|..+  .++++++  |
T Consensus       729 ~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY-~aHkk~i~~igfL~~--lr~i~Sc--D  803 (1034)
T KOG4190|consen  729 CNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTY-QAHKKPIHDIGFLAD--LRSIASC--D  803 (1034)
T ss_pred             ecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEh-hhccCcccceeeeec--cceeeec--c
Confidence            45789999999998888888999999999999999763       2355566 799999999999988  5777765  8


Q ss_pred             CcEEEEECCCCCCCCCCCCCCCCceee-----cccCCceeEEEEecCCCCEEEE-EeCCCcEEEEecCCCCCCCCCCCCC
Q 004468          117 AEVRLFNLSRFSGRGLDDNAITPSALY-----QCHTRRVKKLAVEVGNPHVVWS-ASEDGTLRQHDFRQGSSCPPAGSSH  190 (751)
Q Consensus       117 g~V~vwd~~~~~~~~~~~~~~~~~~~~-----~~h~~~V~~l~~sp~~~~~l~s-~s~Dg~I~iwDlr~~~~~~~~~~~~  190 (751)
                      +-|.+||.-.+          .++...     .+-.+.|+++.- - +.++++. |+...+|+++|.|...-.       
T Consensus       804 ~giHlWDPFig----------r~Laq~~dapk~~a~~~ikcl~n-v-~~~iliAgcsaeSTVKl~DaRsce~~-------  864 (1034)
T KOG4190|consen  804 GGIHLWDPFIG----------RLLAQMEDAPKEGAGGNIKCLEN-V-DRHILIAGCSAESTVKLFDARSCEWT-------  864 (1034)
T ss_pred             Ccceeeccccc----------chhHhhhcCcccCCCceeEeccc-C-cchheeeeccchhhheeeecccccce-------
Confidence            99999998743          222211     122334554421 1 3444444 478899999999986521       


Q ss_pred             CccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccc
Q 004468          191 QECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTS  253 (751)
Q Consensus       191 ~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~  253 (751)
                        |..           .+...++...-+.++++.| .+++++++-..|.|.+.|.|+++.+.+
T Consensus       865 --~E~-----------kVcna~~Pna~~R~iaVa~-~GN~lAa~LSnGci~~LDaR~G~vINs  913 (1034)
T KOG4190|consen  865 --CEL-----------KVCNAPGPNALTRAIAVAD-KGNKLAAALSNGCIAILDARNGKVINS  913 (1034)
T ss_pred             --eeE-----------EeccCCCCchheeEEEecc-CcchhhHHhcCCcEEEEecCCCceecc
Confidence              110           1222333456688999999 589999999999999999999875543

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.67  E-value=6.4e-08  Score=105.47  Aligned_cols=141  Identities=19%  Similarity=0.271  Sum_probs=109.1

Q ss_pred             ccccchhhhccccccEEeccCCCcEEEEEECCCC-CEEEEEeCCCcEEEEeCCCCe-EEEEecccCCcceEEEEEecCCC
Q 004468           29 SLQMHSSLVRRLSQERELEGHQGCVNAISWNSKG-SLLISGSDDTHINVWSYSSRK-LLHSIETGHSANVFCTKFVPETS  106 (751)
Q Consensus        29 ~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg-~~LaSgs~Dg~I~IWd~~~~~-~~~~l~~~h~~~V~~v~fsp~s~  106 (751)
                      .+-.+-..-..-.....|.||+..|+.+.|+|.. ..||+++.|..|..||+.+.. .+..+ ..-......|+|+-.. 
T Consensus        93 aiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~-~~w~s~asqVkwnyk~-  170 (1081)
T KOG0309|consen   93 AIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYST-SSWRSAASQVKWNYKD-  170 (1081)
T ss_pred             hhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeee-ecccccCceeeecccC-
Confidence            3333333344445667889999999999999964 599999999999999998653 44444 3344567889999873 


Q ss_pred             CcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCC
Q 004468          107 DELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGS  181 (751)
Q Consensus       107 ~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~  181 (751)
                       ..+...+....|+|||.+.+.         .++..+++|...|+.++|....-..+++++.||+|+.||.....
T Consensus       171 -p~vlasshg~~i~vwd~r~gs---------~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt  235 (1081)
T KOG0309|consen  171 -PNVLASSHGNDIFVWDLRKGS---------TPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKST  235 (1081)
T ss_pred             -cchhhhccCCceEEEeccCCC---------cceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccc
Confidence             444445677889999999763         67889999999999999986555678899999999999988754

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.67  E-value=1.1e-07  Score=88.85  Aligned_cols=123  Identities=28%  Similarity=0.296  Sum_probs=105.8

Q ss_pred             cchhHHHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhc-ccccchhhhHHHhhHHHhcCCC
Q 004468          360 LGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLK-RKWKNDAQMAIRDCYNARRIDS  438 (751)
Q Consensus       360 ~~~~~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~-r~w~~d~y~al~d~~~a~~~~~  438 (751)
                      ...+-.|+..++..+.+|. |-.|...|..+|..++.... ..+..||+|||+++++ ++|.    +|+.||-+|++|+|
T Consensus        92 ~~kad~lK~EGN~~F~ngd-yeeA~skY~~Ale~cp~~~~-e~rsIly~Nraaa~iKl~k~e----~aI~dcsKaiel~p  165 (271)
T KOG4234|consen   92 IEKADSLKKEGNELFKNGD-YEEANSKYQEALESCPSTST-EERSILYSNRAAALIKLRKWE----SAIEDCSKAIELNP  165 (271)
T ss_pred             HHHHHHHHHHHHHhhhccc-HHHHHHHHHHHHHhCccccH-HHHHHHHhhhHHHHHHhhhHH----HHHHHHHhhHhcCc
Confidence            3445678888999999998 88999999999999987644 5678899999999996 5574    78999999999999


Q ss_pred             CCcchHHHHHHHHHHhcchHHHHHHHHHhcccCCCChhhhHHHHHHHHHH
Q 004468          439 SSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHI  488 (751)
Q Consensus       439 ~~~~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~  488 (751)
                      .+.||..|.+.++..+.++.+|++-..++....|+.....+++..|...+
T Consensus       166 ty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i  215 (271)
T KOG4234|consen  166 TYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLPPKI  215 (271)
T ss_pred             hhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHH
Confidence            99999999999999999999999999999999998887777776664444

>PRK04792 tolB translocation protein TolB; Provisional

Probab=98.66  E-value=2.1e-06  Score=95.87  Aligned_cols=201  Identities=7%  Similarity=0.035  Sum_probs=114.8

Q ss_pred             cEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEEC-CC--cEEEEECCCCCCCCCCCCCCCCceeecccCCc
Q 004468           73 HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG-DA--EVRLFNLSRFSGRGLDDNAITPSALYQCHTRR  149 (751)
Q Consensus        73 ~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~-Dg--~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~  149 (751)
                      .|.++|...... ..+ ..+...+.+..|+|+  |+.|+..+. ++  .|.+||+..+..        ..+..+   .+.
T Consensus       199 ~l~i~d~dG~~~-~~l-~~~~~~~~~p~wSPD--G~~La~~s~~~g~~~L~~~dl~tg~~--------~~lt~~---~g~  263 (448)
T PRK04792        199 QLMIADYDGYNE-QML-LRSPEPLMSPAWSPD--GRKLAYVSFENRKAEIFVQDIYTQVR--------EKVTSF---PGI  263 (448)
T ss_pred             EEEEEeCCCCCc-eEe-ecCCCcccCceECCC--CCEEEEEEecCCCcEEEEEECCCCCe--------EEecCC---CCC
Confidence            577778654433 344 566788999999999  777776543 33  588888875421        112222   233


Q ss_pred             eeEEEEecCCCCEEEEEeCCCc--EEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCC
Q 004468          150 VKKLAVEVGNPHVVWSASEDGT--LRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR  227 (751)
Q Consensus       150 V~~l~~sp~~~~~l~s~s~Dg~--I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~  227 (751)
                      ....+|+|++..++++.+.+|.  |.++|+.+++..                       .+..   +.......+|+|+ 
T Consensus       264 ~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~-----------------------~lt~---~~~~~~~p~wSpD-  316 (448)
T PRK04792        264 NGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALT-----------------------RITR---HRAIDTEPSWHPD-  316 (448)
T ss_pred             cCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeE-----------------------ECcc---CCCCccceEECCC-
Confidence            4468999965556566777776  666777665411                       0110   1223456789996 


Q ss_pred             CcEEEEEe-CCC--eEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeC-CC--
Q 004468          228 PHLLLVGG-SDA--FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GE--  301 (751)
Q Consensus       228 ~~~l~sgs-~D~--~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~-d~--  301 (751)
                      ++.|+..+ .++  .|.++|+.+++...              .     ...+.   .....+|+|||++|+..+. ++  
T Consensus       317 G~~I~f~s~~~g~~~Iy~~dl~~g~~~~--------------L-----t~~g~---~~~~~~~SpDG~~l~~~~~~~g~~  374 (448)
T PRK04792        317 GKSLIFTSERGGKPQIYRVNLASGKVSR--------------L-----TFEGE---QNLGGSITPDGRSMIMVNRTNGKF  374 (448)
T ss_pred             CCEEEEEECCCCCceEEEEECCCCCEEE--------------E-----ecCCC---CCcCeeECCCCCEEEEEEecCCce
Confidence            55555444 344  46666765543110              0     00111   1234689999999887655 33  


Q ss_pred             cEEEEECCCCCcceeeeecCCCceeEEeCCCCCCcccC
Q 004468          302 HVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQ  339 (751)
Q Consensus       302 ~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~  339 (751)
                      .|+++|+.++.... .. .........|+|+...+.+.
T Consensus       375 ~I~~~dl~~g~~~~-lt-~~~~d~~ps~spdG~~I~~~  410 (448)
T PRK04792        375 NIARQDLETGAMQV-LT-STRLDESPSVAPNGTMVIYS  410 (448)
T ss_pred             EEEEEECCCCCeEE-cc-CCCCCCCceECCCCCEEEEE
Confidence            56777887754322 22 22223345688877766554

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.66  E-value=2e-07  Score=90.25  Aligned_cols=170  Identities=15%  Similarity=0.131  Sum_probs=109.5

Q ss_pred             cccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCe-EEEEecccCCcceEEEEEecCCCCcEEEEEEC----
Q 004468           41 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK-LLHSIETGHSANVFCTKFVPETSDELVVSGAG----  115 (751)
Q Consensus        41 ~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~-~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~----  115 (751)
                      .+.+++..|++.=.+-..+-.++.++++..||.+.+.+.+.-. ....+...|.+ -.+.+....  +.+|.++..    
T Consensus        80 ~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~-~as~~~~~~--~~~i~s~~~g~~n  156 (319)
T KOG4714|consen   80 DPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSG-SASRKICRH--GNSILSGGCGNWN  156 (319)
T ss_pred             CceeeeeccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhccccccc-ccccceeec--ccEEecCCcceEe
Confidence            4445555555544444444467889999999999999976421 11222122322 334444444  455554422    


Q ss_pred             -CCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccc
Q 004468          116 -DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECR  194 (751)
Q Consensus       116 -Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~  194 (751)
                       -+..+.|+++..          +.+.....-...|.+++-+|...+++++|+.||.+-+||.|....+           
T Consensus       157 ~~d~~~a~~~~p~----------~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p-----------  215 (319)
T KOG4714|consen  157 AQDNFYANTLDPI----------KTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMP-----------  215 (319)
T ss_pred             eccceeeeccccc----------ccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccch-----------
Confidence             123445555421          0011111122349999999977789999999999999999986422           


Q ss_pred             eEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCC
Q 004468          195 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM  247 (751)
Q Consensus       195 ~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~  247 (751)
                                   ......|+.++..+-|+|.++..|++++.||.+..||..+
T Consensus       216 -------------~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  216 -------------VSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             -------------HHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence                         2223347889999999999999999999999999999874

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.65  E-value=6.6e-06  Score=86.99  Aligned_cols=224  Identities=13%  Similarity=0.162  Sum_probs=141.3

Q ss_pred             CCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCC-----------
Q 004468           49 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA-----------  117 (751)
Q Consensus        49 H~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg-----------  117 (751)
                      -.-+|..++|||.|.+|++...- .|.+|....+..+..+  .| ..|..+.|+|.  +.+|+|=+...           
T Consensus        31 ~~~p~~~~~~SP~G~~l~~~~~~-~V~~~~g~~~~~l~~~--~~-~~V~~~~fSP~--~kYL~tw~~~pi~~pe~e~sp~  104 (561)
T COG5354          31 ENWPVAYVSESPLGTYLFSEHAA-GVECWGGPSKAKLVRF--RH-PDVKYLDFSPN--EKYLVTWSREPIIEPEIEISPF  104 (561)
T ss_pred             cCcchhheeecCcchheehhhcc-ceEEccccchhheeee--ec-CCceecccCcc--cceeeeeccCCccChhhccCCc
Confidence            45678999999999999998765 5999998877766666  24 45999999999  89999876544           


Q ss_pred             ----cEEEEECCCCCCCCCCCCCCCCceeecccCCc--ee-EEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCC
Q 004468          118 ----EVRLFNLSRFSGRGLDDNAITPSALYQCHTRR--VK-KLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSH  190 (751)
Q Consensus       118 ----~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~--V~-~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~  190 (751)
                          .+.|||+.++          ..+..+..-..+  .+ -+.|+-++ .+++-- -...+.++++ +.....      
T Consensus       105 ~~~n~~~vwd~~sg----------~iv~sf~~~~q~~~~Wp~~k~s~~D-~y~ARv-v~~sl~i~e~-t~n~~~------  165 (561)
T COG5354         105 TSKNNVFVWDIASG----------MIVFSFNGISQPYLGWPVLKFSIDD-KYVARV-VGSSLYIHEI-TDNIEE------  165 (561)
T ss_pred             cccCceeEEeccCc----------eeEeeccccCCcccccceeeeeecc-hhhhhh-ccCeEEEEec-CCcccc------
Confidence                4899999865          334555544444  34 56777744 444333 2346888887 332110      


Q ss_pred             CccceEEEecccCceecccCCCCCccceEEEEEeCC-CCcEEE-----EEeCCCeEEEEeCCCCCCccccCCCCCCCCcc
Q 004468          191 QECRNILLDLRCGAKRSLADPPKQTLSLKSCDISST-RPHLLL-----VGGSDAFARLYDRRMLPPLTSCQKRMSPPPCV  264 (751)
Q Consensus       191 ~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~-~~~~l~-----sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~  264 (751)
                                  +..     .......+....|+|. ++..|+     ..+.++.++||.+...+.+..           
T Consensus       166 ------------~p~-----~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~t-----------  217 (561)
T COG5354         166 ------------HPF-----KNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVT-----------  217 (561)
T ss_pred             ------------Cch-----hhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeee-----------
Confidence                        000     0001235666777774 222233     246778899998875443321           


Q ss_pred             ccccccccccCCccccceEEEEEcCCCCEEEEEeC-----------CCcEEEEECCCCCcceeeeecCCCceeEEeCCCC
Q 004468          265 NYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-----------GEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTL  333 (751)
Q Consensus       265 ~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~-----------d~~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp~~  333 (751)
                      +.+     ..   .  .=..+.|.+.|++|++-..           ...++|+++.. ....+.....+++..++|.|..
T Consensus       218 k~l-----fk---~--~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e-~~i~V~~~~~~pVhdf~W~p~S  286 (561)
T COG5354         218 KNL-----FK---V--SGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITE-RSIPVEKDLKDPVHDFTWEPLS  286 (561)
T ss_pred             eee-----Ee---e--cccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecc-cccceeccccccceeeeecccC
Confidence            111     00   0  1245889999998775421           35689999985 3333443557888899999987


Q ss_pred             CCc
Q 004468          334 NGL  336 (751)
Q Consensus       334 ~~~  336 (751)
                      ++.
T Consensus       287 ~~F  289 (561)
T COG5354         287 SRF  289 (561)
T ss_pred             Cce
Confidence            654

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.63  E-value=7.3e-08  Score=67.66  Aligned_cols=38  Identities=39%  Similarity=0.834  Sum_probs=36.6

Q ss_pred             cccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEe
Q 004468           41 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWS   78 (751)
Q Consensus        41 ~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd   78 (751)
                      +++++|++|.+.|++|+|+|++++|+||+.|++|+|||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            57889999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.60  E-value=1.8e-06  Score=92.99  Aligned_cols=192  Identities=17%  Similarity=0.180  Sum_probs=138.0

Q ss_pred             CCCCCEEEEEeCCCcEEEEeCCCCeEEEEecc-c-CCcceEEEEEe------cC------------CCCcEEEEEECCCc
Q 004468           59 NSKGSLLISGSDDTHINVWSYSSRKLLHSIET-G-HSANVFCTKFV------PE------------TSDELVVSGAGDAE  118 (751)
Q Consensus        59 s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~-~-h~~~V~~v~fs------p~------------s~~~~l~sgs~Dg~  118 (751)
                      .|.+.++|....||.++||+...++....+.. . -.+...+.+|.      |-            .+-..++-|-..|.
T Consensus         2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~   81 (541)
T KOG4547|consen    2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS   81 (541)
T ss_pred             CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence            35567999999999999999998887766621 1 13344455543      21            01246777888899


Q ss_pred             EEEEECCCCCCCCCCCCCCCCceee--cccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceE
Q 004468          119 VRLFNLSRFSGRGLDDNAITPSALY--QCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNI  196 (751)
Q Consensus       119 V~vwd~~~~~~~~~~~~~~~~~~~~--~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~  196 (751)
                      |.++++..+          +....+  .+|.+.|.++.++. .-..|.|++.|+.+.+|+.......             
T Consensus        82 v~~ys~~~g----------~it~~~st~~h~~~v~~~~~~~-~~~ciyS~~ad~~v~~~~~~~~~~~-------------  137 (541)
T KOG4547|consen   82 VLLYSVAGG----------EITAKLSTDKHYGNVNEILDAQ-RLGCIYSVGADLKVVYILEKEKVII-------------  137 (541)
T ss_pred             EEEEEecCC----------eEEEEEecCCCCCcceeeeccc-ccCceEecCCceeEEEEecccceee-------------
Confidence            999999864          223333  57999999999887 5578889999999999998876521             


Q ss_pred             EEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCC
Q 004468          197 LLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHG  276 (751)
Q Consensus       197 l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  276 (751)
                                  .........+.+++++|+ +..+++++  +.|++||+.+.+.+..             |       .|
T Consensus       138 ------------~~~~~~~~~~~sl~is~D-~~~l~~as--~~ik~~~~~~kevv~~-------------f-------tg  182 (541)
T KOG4547|consen  138 ------------RIWKEQKPLVSSLCISPD-GKILLTAS--RQIKVLDIETKEVVIT-------------F-------TG  182 (541)
T ss_pred             ------------eeeccCCCccceEEEcCC-CCEEEecc--ceEEEEEccCceEEEE-------------e-------cC
Confidence                        111123456788999995 78888876  5899999998764433             3       45


Q ss_pred             ccccceEEEEEcCC-----CCEEEEEeC-CCcEEEEECCC
Q 004468          277 RSSLHLTHVTFSPN-----GEEVLLSYS-GEHVYLMDVNH  310 (751)
Q Consensus       277 ~~~~~vt~v~fspd-----g~~Ll~~s~-d~~I~lwdl~~  310 (751)
                      |.+ +|.++.|--+     |.+++++.. +..|.+|-+..
T Consensus       183 h~s-~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  183 HGS-PVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             CCc-ceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence            555 6999999887     888887765 66777776665

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.59  E-value=1.2e-05  Score=98.12  Aligned_cols=243  Identities=12%  Similarity=0.128  Sum_probs=138.3

Q ss_pred             EEEEEECCCCCEEEEEe-CCCcEEEEeCCCCeEEEEecc-cC---------------CcceEEEEEecCCCCcEEEEEEC
Q 004468           53 VNAISWNSKGSLLISGS-DDTHINVWSYSSRKLLHSIET-GH---------------SANVFCTKFVPETSDELVVSGAG  115 (751)
Q Consensus        53 V~~l~~s~dg~~LaSgs-~Dg~I~IWd~~~~~~~~~l~~-~h---------------~~~V~~v~fsp~s~~~~l~sgs~  115 (751)
                      ...|+++++++.|..+. ..+.|+++|..++.. .++.. +.               -..-..|+|+|+. +.++++.+.
T Consensus       626 P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~-g~LyVad~~  703 (1057)
T PLN02919        626 PQGLAYNAKKNLLYVADTENHALREIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVN-EKVYIAMAG  703 (1057)
T ss_pred             CcEEEEeCCCCEEEEEeCCCceEEEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCC-CeEEEEECC
Confidence            57889999888655544 456799999877643 33311 10               1134689999953 678888888


Q ss_pred             CCcEEEEECCCCCCCCCCCCCCCCceeecc------cCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCC
Q 004468          116 DAEVRLFNLSRFSGRGLDDNAITPSALYQC------HTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSS  189 (751)
Q Consensus       116 Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~------h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~  189 (751)
                      ++.|++||...+........ .. .....+      .-.....|+++|++..++++-+.++.|++||+.++.........
T Consensus       704 ~~~I~v~d~~~g~v~~~~G~-G~-~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~  781 (1057)
T PLN02919        704 QHQIWEYNISDGVTRVFSGD-GY-ERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGD  781 (1057)
T ss_pred             CCeEEEEECCCCeEEEEecC-Cc-cccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecc
Confidence            99999999875321100000 00 000001      12345679999966558888888999999999875421000000


Q ss_pred             CCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccc
Q 004468          190 HQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCP  269 (751)
Q Consensus       190 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~  269 (751)
                      .... ..+........  .. ..........++++++ +.++++-..++.|++||..+.......... .     ..+..
T Consensus       782 ~~~~-~~l~~fG~~dG--~g-~~~~l~~P~Gvavd~d-G~LYVADs~N~rIrviD~~tg~v~tiaG~G-~-----~G~~d  850 (1057)
T PLN02919        782 PTFS-DNLFKFGDHDG--VG-SEVLLQHPLGVLCAKD-GQIYVADSYNHKIKKLDPATKRVTTLAGTG-K-----AGFKD  850 (1057)
T ss_pred             cccC-cccccccCCCC--ch-hhhhccCCceeeEeCC-CcEEEEECCCCEEEEEECCCCeEEEEeccC-C-----cCCCC
Confidence            0000 00000000000  00 0001123457899995 678888889999999999765432211100 0     00000


Q ss_pred             cccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCC
Q 004468          270 MHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG  312 (751)
Q Consensus       270 ~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~  312 (751)
                      +.. ..+.- .....|+++++|+.+++.+.++.|++||+.++.
T Consensus       851 G~~-~~a~l-~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~  891 (1057)
T PLN02919        851 GKA-LKAQL-SEPAGLALGENGRLFVADTNNSLIRYLDLNKGE  891 (1057)
T ss_pred             Ccc-ccccc-CCceEEEEeCCCCEEEEECCCCEEEEEECCCCc
Confidence            000 00111 136789999999988888899999999998854

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.59  E-value=8.6e-07  Score=91.19  Aligned_cols=162  Identities=16%  Similarity=0.172  Sum_probs=111.3

Q ss_pred             CcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCe----EEEEecccCCcceEEEEEecCCCCcEEEE---EECCCcEEEEE
Q 004468           51 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRK----LLHSIETGHSANVFCTKFVPETSDELVVS---GAGDAEVRLFN  123 (751)
Q Consensus        51 ~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~----~~~~l~~~h~~~V~~v~fsp~s~~~~l~s---gs~Dg~V~vwd  123 (751)
                      ..++.+..++++++||.+..++...+.++....    ++...  .-...-+.+.|..+  ...+..   ++....+.+|.
T Consensus        63 ~a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~--~v~~~~~ai~~~~~--~~sv~v~dkagD~~~~di~s  138 (390)
T KOG3914|consen   63 LAPALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVS--CVPKRPTAISFIRE--DTSVLVADKAGDVYSFDILS  138 (390)
T ss_pred             ccccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEe--ecccCcceeeeeec--cceEEEEeecCCceeeeeec
Confidence            345667788899999999888887777765332    22222  22333445555555  333333   34445555665


Q ss_pred             CCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccC
Q 004468          124 LSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCG  203 (751)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~  203 (751)
                      ...+           +....-||-..++.++|+| ++.+++++..|..||+-..-....+                    
T Consensus       139 ~~~~-----------~~~~~lGhvSml~dVavS~-D~~~IitaDRDEkIRvs~ypa~f~I--------------------  186 (390)
T KOG3914|consen  139 ADSG-----------RCEPILGHVSMLLDVAVSP-DDQFIITADRDEKIRVSRYPATFVI--------------------  186 (390)
T ss_pred             cccc-----------CcchhhhhhhhhheeeecC-CCCEEEEecCCceEEEEecCcccch--------------------
Confidence            5532           2345678999999999999 5688999999999998765543311                    


Q ss_pred             ceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCcccc
Q 004468          204 AKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSC  254 (751)
Q Consensus       204 ~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~  254 (751)
                          -...-+|...|..+++-++  +.|++|+.|++||+||+++++.+..+
T Consensus       187 ----esfclGH~eFVS~isl~~~--~~LlS~sGD~tlr~Wd~~sgk~L~t~  231 (390)
T KOG3914|consen  187 ----ESFCLGHKEFVSTISLTDN--YLLLSGSGDKTLRLWDITSGKLLDTC  231 (390)
T ss_pred             ----hhhccccHhheeeeeeccC--ceeeecCCCCcEEEEecccCCccccc
Confidence                1122348888999999873  67999999999999999999877554

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.54  E-value=8.6e-08  Score=106.24  Aligned_cols=231  Identities=16%  Similarity=0.187  Sum_probs=156.5

Q ss_pred             chHHHHHhhhccCcCc-ccccccccchhhhccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEE
Q 004468            9 GSIYDMLDTRHTDTRP-DVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHS   87 (751)
Q Consensus         9 ~~~~~~l~~r~~~~~~-~~~~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~   87 (751)
                      -|++..+..|++-+.+ .++....-.....++++.+++++.|+...+|++|+-+.+.|+.|+-.|.|+++++.+|.....
T Consensus      1059 ~N~t~Rl~~rel~~~y~gV~g~~~dr~~IFSRFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s 1138 (1516)
T KOG1832|consen 1059 LNMTGRLGTRELQSFYSGVHGNRRDRQFIFSRFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEES 1138 (1516)
T ss_pred             hhhhhcccchhhcCcccccccCcccchhhHhhcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCcccccc
Confidence            3555566666654432 233333333345688999999999999999999999999999999999999999999998888


Q ss_pred             ecccCCcceEEEEEecCCCCcEEEEEECC-C-cEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEE
Q 004468           88 IETGHSANVFCTKFVPETSDELVVSGAGD-A-EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWS  165 (751)
Q Consensus        88 l~~~h~~~V~~v~fsp~s~~~~l~sgs~D-g-~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s  165 (751)
                      . .+|..+|+-|.=+.+  |..+++.+.- . -..+|++..-         ..+.+.|..    -.++.|+.. ...-+.
T Consensus      1139 ~-ncH~SavT~vePs~d--gs~~Ltsss~S~PlsaLW~~~s~---------~~~~Hsf~e----d~~vkFsn~-~q~r~~ 1201 (1516)
T KOG1832|consen 1139 V-NCHQSAVTLVEPSVD--GSTQLTSSSSSSPLSALWDASST---------GGPRHSFDE----DKAVKFSNS-LQFRAL 1201 (1516)
T ss_pred             c-cccccccccccccCC--cceeeeeccccCchHHHhccccc---------cCccccccc----cceeehhhh-HHHHHh
Confidence            8 899999999998887  6666654433 3 5789999852         134555543    346778763 233334


Q ss_pred             EeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeC
Q 004468          166 ASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDR  245 (751)
Q Consensus       166 ~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~  245 (751)
                      |..-....+||+.++..+......                     .......-++..|+|.+ .+++   +||  .+||+
T Consensus      1202 gt~~d~a~~YDvqT~~~l~tylt~---------------------~~~~~y~~n~a~FsP~D-~LIl---ndG--vLWDv 1254 (1516)
T KOG1832|consen 1202 GTEADDALLYDVQTCSPLQTYLTD---------------------TVTSSYSNNLAHFSPCD-TLIL---NDG--VLWDV 1254 (1516)
T ss_pred             cccccceEEEecccCcHHHHhcCc---------------------chhhhhhccccccCCCc-ceEe---eCc--eeeee
Confidence            444457789999998765321111                     00122333677899964 4544   455  38999


Q ss_pred             CCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004468          246 RMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (751)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~  310 (751)
                      |..+.+..+..          |   ..         --.-.|+|.|..++.++.     |||+++
T Consensus      1255 R~~~aIh~FD~----------f---t~---------~~~G~FHP~g~eVIINSE-----IwD~RT 1292 (1516)
T KOG1832|consen 1255 RIPEAIHRFDQ----------F---TD---------YGGGGFHPSGNEVIINSE-----IWDMRT 1292 (1516)
T ss_pred             ccHHHHhhhhh----------h---ee---------cccccccCCCceEEeech-----hhhhHH
Confidence            97654443311          1   00         112359999999999874     899988

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=98.54  E-value=3e-05  Score=83.71  Aligned_cols=230  Identities=15%  Similarity=0.191  Sum_probs=137.1

Q ss_pred             cccccEEeccCCCcEEEEEECCCCCEEEEEe-CCCcEEEEeCCC-CeEEEE--ecc----------cCCcceEEEEEecC
Q 004468           39 RLSQERELEGHQGCVNAISWNSKGSLLISGS-DDTHINVWSYSS-RKLLHS--IET----------GHSANVFCTKFVPE  104 (751)
Q Consensus        39 ~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs-~Dg~I~IWd~~~-~~~~~~--l~~----------~h~~~V~~v~fsp~  104 (751)
                      +++.+.+..........++++|++++|+++. .+|.|.++++.. +.....  +..          .-.....++.|+|+
T Consensus        75 ~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pd  154 (345)
T PF10282_consen   75 TLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPD  154 (345)
T ss_dssp             EEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TT
T ss_pred             eeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCC
Confidence            4445555543444556799999999999987 589999999976 433322  100          12356789999999


Q ss_pred             CCCcEEEEE-ECCCcEEEEECCCCCCCCCCCCCCCCceeec-ccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCC
Q 004468          105 TSDELVVSG-AGDAEVRLFNLSRFSGRGLDDNAITPSALYQ-CHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSS  182 (751)
Q Consensus       105 s~~~~l~sg-s~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~  182 (751)
                        ++++++. -....|.+|++....+..      .....+. ......+.++|+|++..+++..-.+++|.++++.....
T Consensus       155 --g~~v~v~dlG~D~v~~~~~~~~~~~l------~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g  226 (345)
T PF10282_consen  155 --GRFVYVPDLGADRVYVYDIDDDTGKL------TPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDG  226 (345)
T ss_dssp             --SSEEEEEETTTTEEEEEEE-TTS-TE------EEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTT
T ss_pred             --CCEEEEEecCCCEEEEEEEeCCCceE------EEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCC
Confidence              6776654 345689999998643211      1122222 23455789999996656667777889999999883321


Q ss_pred             CCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEE-EeCCCeEEEEeCCCC-CCccccCCCCCC
Q 004468          183 CPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLV-GGSDAFARLYDRRML-PPLTSCQKRMSP  260 (751)
Q Consensus       183 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~s-gs~D~~IriwD~~~~-~~~~~~~~~~~~  260 (751)
                      .          ...+....     .+............|.++|+ +++|.+ .-.+..|-+|++... ..+...      
T Consensus       227 ~----------~~~~~~~~-----~~~~~~~~~~~~~~i~ispd-g~~lyvsnr~~~sI~vf~~d~~~g~l~~~------  284 (345)
T PF10282_consen  227 S----------LTEIQTIS-----TLPEGFTGENAPAEIAISPD-GRFLYVSNRGSNSISVFDLDPATGTLTLV------  284 (345)
T ss_dssp             E----------EEEEEEEE-----SCETTSCSSSSEEEEEE-TT-SSEEEEEECTTTEEEEEEECTTTTTEEEE------
T ss_pred             c----------eeEEEEee-----eccccccccCCceeEEEecC-CCEEEEEeccCCEEEEEEEecCCCceEEE------
Confidence            0          01111000     01011112236788999996 555554 557789999999432 111110      


Q ss_pred             CCccccccccccccCCccccceEEEEEcCCCCEEEEEeC-CCcEEEEECCC
Q 004468          261 PPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GEHVYLMDVNH  310 (751)
Q Consensus       261 ~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~-d~~I~lwdl~~  310 (751)
                          ..+     ...|   .....++|+|+|++|+++.. ++.|.+|+++.
T Consensus       285 ----~~~-----~~~G---~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~  323 (345)
T PF10282_consen  285 ----QTV-----PTGG---KFPRHFAFSPDGRYLYVANQDSNTVSVFDIDP  323 (345)
T ss_dssp             ----EEE-----EESS---SSEEEEEE-TTSSEEEEEETTTTEEEEEEEET
T ss_pred             ----EEE-----eCCC---CCccEEEEeCCCCEEEEEecCCCeEEEEEEeC
Confidence                000     0011   13688999999999998875 78999998853

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.52  E-value=5.2e-06  Score=91.56  Aligned_cols=244  Identities=18%  Similarity=0.208  Sum_probs=164.9

Q ss_pred             cEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCC----------CCcEEEEEECCCcEEE
Q 004468           52 CVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPET----------SDELVVSGAGDAEVRL  121 (751)
Q Consensus        52 ~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s----------~~~~l~sgs~Dg~V~v  121 (751)
                      .-+++.|+|.| +||-|+.. .|.|-|..+-+.+..+ .-|...|+.|+|.|..          ..-+|+++...|.|.|
T Consensus        17 N~~A~Dw~~~G-LiAygshs-lV~VVDs~s~q~iqsi-e~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil   93 (1062)
T KOG1912|consen   17 NRNAADWSPSG-LIAYGSHS-LVSVVDSRSLQLIQSI-ELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIIL   93 (1062)
T ss_pred             cccccccCccc-eEEEecCc-eEEEEehhhhhhhhcc-ccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEE
Confidence            36789999887 67777654 7888899988999988 7899999999998752          1236788888999999


Q ss_pred             EECCCCCCCCCCCCCCCCceeecccCCceeEEEEec--CCC-CEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEE
Q 004468          122 FNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEV--GNP-HVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILL  198 (751)
Q Consensus       122 wd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp--~~~-~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~  198 (751)
                      ||....          ..+..+..|.++|..++|-+  ++. ++|+.-..-.+|.+|+..+|+.              +|
T Consensus        94 ~d~~~~----------s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k--------------~W  149 (1062)
T KOG1912|consen   94 VDFVLA----------SVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEK--------------FW  149 (1062)
T ss_pred             EEehhh----------hhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCce--------------ee
Confidence            999865          23556788999999999976  233 5777777778999999998863              33


Q ss_pred             ecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccc----ccccc
Q 004468          199 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCP----MHLSE  274 (751)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~  274 (751)
                      ....           ......|+.+.|-+.+.+..-+..|.|-+-+.--.++-..      +....+...+    .|+..
T Consensus       150 k~~y-----------s~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~------pgk~~qI~sd~Sdl~~ler  212 (1062)
T KOG1912|consen  150 KYDY-----------SHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDV------PGKEFQITSDHSDLAHLER  212 (1062)
T ss_pred             cccc-----------CCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCC------CceeEEEecCccchhhhhh
Confidence            3222           3345678899998888888888888888877654332111      0000000000    00000


Q ss_pred             -----CCccc-----cce---EEEEEcCCCCEEEEEeCCCcEEEEECCCCCcceeeeecCCCceeEEeCCCCCCcccC
Q 004468          275 -----HGRSS-----LHL---THVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQ  339 (751)
Q Consensus       275 -----~g~~~-----~~v---t~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~  339 (751)
                           ..+..     +-+   ..++|+|.-+.++-......++|+|++-.....+..-.....+.+.+-|+.+...+.
T Consensus       213 e~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~Lf  290 (1062)
T KOG1912|consen  213 ETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALF  290 (1062)
T ss_pred             hhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEE
Confidence                 00000     011   236789988777777778899999998755444444455556677777776655443

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=98.50  E-value=4.7e-05  Score=82.21  Aligned_cols=262  Identities=12%  Similarity=0.110  Sum_probs=151.6

Q ss_pred             ccccccEEeccCCCcEEEEEECCCCCEEEEEeC----CCcEEEEeCCCC--e--EEEEecccCCcceEEEEEecCCCCcE
Q 004468           38 RRLSQERELEGHQGCVNAISWNSKGSLLISGSD----DTHINVWSYSSR--K--LLHSIETGHSANVFCTKFVPETSDEL  109 (751)
Q Consensus        38 ~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~----Dg~I~IWd~~~~--~--~~~~l~~~h~~~V~~v~fsp~s~~~~  109 (751)
                      .++..+..+. -......|+++|++++|.+...    ++.|..|.+...  .  .+... .........++++|+  +++
T Consensus        25 g~l~~~~~~~-~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~-~~~g~~p~~i~~~~~--g~~  100 (345)
T PF10282_consen   25 GTLTLVQTVA-EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSV-PSGGSSPCHIAVDPD--GRF  100 (345)
T ss_dssp             TEEEEEEEEE-ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEE-EESSSCEEEEEECTT--SSE
T ss_pred             CCceEeeeec-CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeee-ccCCCCcEEEEEecC--CCE
Confidence            3444444432 3345567899999999998876    578999987653  3  23333 223445567899999  777


Q ss_pred             EEEEE-CCCcEEEEECCCCCCCCCCCCCCCCceeec----------ccCCceeEEEEecCCCCEEEEEeCCCcEEEEecC
Q 004468          110 VVSGA-GDAEVRLFNLSRFSGRGLDDNAITPSALYQ----------CHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFR  178 (751)
Q Consensus       110 l~sgs-~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~----------~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr  178 (751)
                      |+++. .+++|.++++... +...     .....+.          .-.....++.|+|++..++++.-....|.+|++.
T Consensus       101 l~vany~~g~v~v~~l~~~-g~l~-----~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~  174 (345)
T PF10282_consen  101 LYVANYGGGSVSVFPLDDD-GSLG-----EVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDID  174 (345)
T ss_dssp             EEEEETTTTEEEEEEECTT-SEEE-----EEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-
T ss_pred             EEEEEccCCeEEEEEccCC-cccc-----eeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEe
Confidence            77765 5899999999863 2110     1111111          1234467899999554455444445689999997


Q ss_pred             CCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCC-CccccCCC
Q 004468          179 QGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP-PLTSCQKR  257 (751)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~-~~~~~~~~  257 (751)
                      .....          .....        .+..  ........+.|+|++...+++.-.++.|.+|++.... .+..    
T Consensus       175 ~~~~~----------l~~~~--------~~~~--~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~----  230 (345)
T PF10282_consen  175 DDTGK----------LTPVD--------SIKV--PPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTE----  230 (345)
T ss_dssp             TTS-T----------EEEEE--------EEEC--STTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEE----
T ss_pred             CCCce----------EEEee--------cccc--ccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeE----
Confidence            75411          00000        0100  1224567899999655556667778999999987221 1111    


Q ss_pred             CCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeC-CCcEEEEECCC--CCccee--eeecCCCceeEEeCCC
Q 004468          258 MSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GEHVYLMDVNH--AGGRAM--RYTVGDASKIMSFTPT  332 (751)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~-d~~I~lwdl~~--~~~~~~--~~~~~~~~~~~~~sp~  332 (751)
                            ++..........+.  .....|+++|||++|+++.. .+.|.+|+++.  +.....  ....+..++.+.++|+
T Consensus       231 ------~~~~~~~~~~~~~~--~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~  302 (345)
T PF10282_consen  231 ------IQTISTLPEGFTGE--NAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPD  302 (345)
T ss_dssp             ------EEEEESCETTSCSS--SSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TT
T ss_pred             ------EEEeeecccccccc--CCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCC
Confidence                  11110000000111  14788999999999888764 78999999953  222222  2223566899999999


Q ss_pred             CCCcccCCC
Q 004468          333 LNGLELQPP  341 (751)
Q Consensus       333 ~~~~~~~~~  341 (751)
                      .+.+.....
T Consensus       303 g~~l~Va~~  311 (345)
T PF10282_consen  303 GRYLYVANQ  311 (345)
T ss_dssp             SSEEEEEET
T ss_pred             CCEEEEEec
Confidence            887766544

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=98.49  E-value=3.7e-07  Score=108.47  Aligned_cols=152  Identities=17%  Similarity=0.244  Sum_probs=119.3

Q ss_pred             CcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEE---CCCcEEEEECCCC
Q 004468           51 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGA---GDAEVRLFNLSRF  127 (751)
Q Consensus        51 ~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs---~Dg~V~vwd~~~~  127 (751)
                      ..|+.+.|+.+|+.+..+..||.+.+|... .+..... +.|.....++.|.-    ..+++++   .++.+.+||...+
T Consensus      2252 s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~-qchnk~~~Df~Fi~----s~~~tag~s~d~~n~~lwDtl~~ 2325 (2439)
T KOG1064|consen 2252 SRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSW-QCHNKALSDFRFIG----SLLATAGRSSDNRNVCLWDTLLP 2325 (2439)
T ss_pred             chhhhhhhcccCCceeeeccCCceeecccC-Ccceecc-ccCCccccceeeee----hhhhccccCCCCCcccchhcccC
Confidence            678888999999999999999999999987 4444444 68999999999985    4677664   5789999998764


Q ss_pred             CCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceec
Q 004468          128 SGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRS  207 (751)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  207 (751)
                      ...       .++.  .+|.+.++++++.| ...+|+|||.+|.|.+||+|..+..                        
T Consensus      2326 ~~~-------s~v~--~~H~~gaT~l~~~P-~~qllisggr~G~v~l~D~rqrql~------------------------ 2371 (2439)
T KOG1064|consen 2326 PMN-------SLVH--TCHDGGATVLAYAP-KHQLLISGGRKGEVCLFDIRQRQLR------------------------ 2371 (2439)
T ss_pred             ccc-------ceee--eecCCCceEEEEcC-cceEEEecCCcCcEEEeehHHHHHH------------------------
Confidence            332       2233  89999999999999 6689999999999999999987632                        


Q ss_pred             ccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCcccc
Q 004468          208 LADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSC  254 (751)
Q Consensus       208 ~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~  254 (751)
                            |....    +.  ...++++|+..|.|+||++.....+..+
T Consensus      2372 ------h~~~~----~~--~~~~f~~~ss~g~ikIw~~s~~~ll~~~ 2406 (2439)
T KOG1064|consen 2372 ------HTFQA----LD--TREYFVTGSSEGNIKIWRLSEFGLLHTF 2406 (2439)
T ss_pred             ------HHhhh----hh--hhheeeccCcccceEEEEccccchhhcC
Confidence                  22222    22  2479999999999999999876554443

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.47  E-value=6.9e-07  Score=91.87  Aligned_cols=102  Identities=20%  Similarity=0.268  Sum_probs=79.5

Q ss_pred             EEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeeccc
Q 004468           67 SGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCH  146 (751)
Q Consensus        67 Sgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h  146 (751)
                      .+++...+.+|....+.+...  .||-..+..|+|+|+  +++|+|+..|..|||-......         .--..+-||
T Consensus       127 kagD~~~~di~s~~~~~~~~~--lGhvSml~dVavS~D--~~~IitaDRDEkIRvs~ypa~f---------~IesfclGH  193 (390)
T KOG3914|consen  127 KAGDVYSFDILSADSGRCEPI--LGHVSMLLDVAVSPD--DQFIITADRDEKIRVSRYPATF---------VIESFCLGH  193 (390)
T ss_pred             ecCCceeeeeecccccCcchh--hhhhhhhheeeecCC--CCEEEEecCCceEEEEecCccc---------chhhhcccc
Confidence            445566666666655444443  499999999999999  7999999999999987765320         112345689


Q ss_pred             CCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCC
Q 004468          147 TRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSC  183 (751)
Q Consensus       147 ~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~  183 (751)
                      +..|..++.-+ + +.|+|+|.|++|++||+++++.+
T Consensus       194 ~eFVS~isl~~-~-~~LlS~sGD~tlr~Wd~~sgk~L  228 (390)
T KOG3914|consen  194 KEFVSTISLTD-N-YLLLSGSGDKTLRLWDITSGKLL  228 (390)
T ss_pred             Hhheeeeeecc-C-ceeeecCCCCcEEEEecccCCcc
Confidence            99999999986 3 56899999999999999999865

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=98.46  E-value=2.3e-05  Score=83.99  Aligned_cols=196  Identities=12%  Similarity=0.133  Sum_probs=126.9

Q ss_pred             CCCcEEEEEECCCCC--EEE-----EEeCCCcEEEEeCCCCeE-----EEEecccCCcceEEEEEecCCCCcEEE--EEE
Q 004468           49 HQGCVNAISWNSKGS--LLI-----SGSDDTHINVWSYSSRKL-----LHSIETGHSANVFCTKFVPETSDELVV--SGA  114 (751)
Q Consensus        49 H~~~V~~l~~s~dg~--~La-----Sgs~Dg~I~IWd~~~~~~-----~~~l~~~h~~~V~~v~fsp~s~~~~l~--sgs  114 (751)
                      |...|+.+.+||.+.  .+|     ++|.-..|+||.+.....     .++|   ....=..+.|.+-.. .+|+  +..
T Consensus       164 ~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksF---Fkadkvqm~WN~~gt-~LLvLastd  239 (566)
T KOG2315|consen  164 SVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSF---FKADKVQMKWNKLGT-ALLVLASTD  239 (566)
T ss_pred             eccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccc---cccceeEEEeccCCc-eEEEEEEEe
Confidence            577899999999743  454     346777899998762211     1122   122233567777642 2333  232


Q ss_pred             CC---------CcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEE-EeCCCcEEEEecCCCCCCC
Q 004468          115 GD---------AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWS-ASEDGTLRQHDFRQGSSCP  184 (751)
Q Consensus       115 ~D---------g~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s-~s~Dg~I~iwDlr~~~~~~  184 (751)
                      -|         .++++.++...          .+...+ .-.++|.++.|+|.+..+-+. |-.--++.+||++..    
T Consensus       240 VDktn~SYYGEq~Lyll~t~g~----------s~~V~L-~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~----  304 (566)
T KOG2315|consen  240 VDKTNASYYGEQTLYLLATQGE----------SVSVPL-LKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK----  304 (566)
T ss_pred             ecCCCccccccceEEEEEecCc----------eEEEec-CCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCC----
Confidence            33         35677777621          112222 248999999999944333333 334568889998763    


Q ss_pred             CCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCC---CeEEEEeCCCCCCccccCCCCCCC
Q 004468          185 PAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD---AFARLYDRRMLPPLTSCQKRMSPP  261 (751)
Q Consensus       185 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D---~~IriwD~~~~~~~~~~~~~~~~~  261 (751)
                                 .++++-             ..+-+++-|||. +++|+.++.+   |.|-|||+.+.+.+..+..     
T Consensus       305 -----------~v~df~-------------egpRN~~~fnp~-g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a-----  354 (566)
T KOG2315|consen  305 -----------PVFDFP-------------EGPRNTAFFNPH-GNIILLAGFGNLPGDMEVWDVPNRKLIAKFKA-----  354 (566)
T ss_pred             -----------EeEeCC-------------CCCccceEECCC-CCEEEEeecCCCCCceEEEeccchhhcccccc-----
Confidence                       334333             234567889995 7888888765   7899999998765544311     


Q ss_pred             CccccccccccccCCccccceEEEEEcCCCCEEEEEeC------CCcEEEEECCCC
Q 004468          262 PCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS------GEHVYLMDVNHA  311 (751)
Q Consensus       262 ~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~------d~~I~lwdl~~~  311 (751)
                                        ...+-+.|+|||.++++++.      |+.++||+....
T Consensus       355 ------------------~~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~  392 (566)
T KOG2315|consen  355 ------------------ANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGS  392 (566)
T ss_pred             ------------------CCceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCc
Confidence                              12577899999999999876      799999999884

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.42  E-value=0.00011  Score=78.11  Aligned_cols=237  Identities=13%  Similarity=0.133  Sum_probs=132.3

Q ss_pred             ccccccEEeccCCCcEEEEEECCCCCEEEEEeC----------CCcEEEEeCCCCeEEEEecccC------CcceEEEEE
Q 004468           38 RRLSQERELEGHQGCVNAISWNSKGSLLISGSD----------DTHINVWSYSSRKLLHSIETGH------SANVFCTKF  101 (751)
Q Consensus        38 ~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~----------Dg~I~IWd~~~~~~~~~l~~~h------~~~V~~v~f  101 (751)
                      .+.+.+.++..-..+- .+ ++|||+.|..+..          +..|.|||..+.+.+..+..+-      ...-..+++
T Consensus        35 ~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~l  112 (352)
T TIGR02658        35 EAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSL  112 (352)
T ss_pred             CCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEE
Confidence            3455556555433322 24 9999998777655          7899999999999998884321      223447889


Q ss_pred             ecCCCCcEEEEEE-C-CCcEEEEECCCCCCCCCCCCCCCCceeec---------------------------ccCCceeE
Q 004468          102 VPETSDELVVSGA-G-DAEVRLFNLSRFSGRGLDDNAITPSALYQ---------------------------CHTRRVKK  152 (751)
Q Consensus       102 sp~s~~~~l~sgs-~-Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~---------------------------~h~~~V~~  152 (751)
                      +|+  |++|+... . +..|-|.|+.+..-...-... .+...+.                           .++..|..
T Consensus       113 s~d--gk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp-~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~  189 (352)
T TIGR02658       113 TPD--NKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVP-DCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFH  189 (352)
T ss_pred             CCC--CCEEEEecCCCCCEEEEEECCCCcEEEEEeCC-CCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeec
Confidence            999  88887655 3 789999999864211100000 0000000                           00000100


Q ss_pred             ---------EEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEE
Q 004468          153 ---------LAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDI  223 (751)
Q Consensus       153 ---------l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~  223 (751)
                               -.|.+.++..++...+ |+|.+.|+.......          ...|.......   ....-....+.-+++
T Consensus       190 ~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~----------~~~~~~~~~~~---~~~~wrP~g~q~ia~  255 (352)
T TIGR02658       190 PEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKF----------LPAIEAFTEAE---KADGWRPGGWQQVAY  255 (352)
T ss_pred             CCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCccee----------cceeeeccccc---cccccCCCcceeEEE
Confidence                     0223324455544444 777777765543110          00111000000   000012233444999


Q ss_pred             eCCCCcEEEEEe---------CCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCC-E
Q 004468          224 SSTRPHLLLVGG---------SDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGE-E  293 (751)
Q Consensus       224 sp~~~~~l~sgs---------~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~-~  293 (751)
                      +|++.++++...         ..+.|.++|..+.+.+..+.                   -|   ..+..++|+|||+ +
T Consensus       256 ~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~-------------------vG---~~~~~iavS~Dgkp~  313 (352)
T TIGR02658       256 HRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIE-------------------LG---HEIDSINVSQDAKPL  313 (352)
T ss_pred             cCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEe-------------------CC---CceeeEEECCCCCeE
Confidence            996444444231         22589999999877554331                   11   1488999999999 7


Q ss_pred             EEEEe-CCCcEEEEECCCCCcce
Q 004468          294 VLLSY-SGEHVYLMDVNHAGGRA  315 (751)
Q Consensus       294 Ll~~s-~d~~I~lwdl~~~~~~~  315 (751)
                      |++.. .++.|.++|..+++...
T Consensus       314 lyvtn~~s~~VsViD~~t~k~i~  336 (352)
T TIGR02658       314 LYALSTGDKTLYIFDAETGKELS  336 (352)
T ss_pred             EEEeCCCCCcEEEEECcCCeEEe
Confidence            77666 57899999999965433

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.42  E-value=0.00011  Score=73.24  Aligned_cols=232  Identities=15%  Similarity=0.136  Sum_probs=133.8

Q ss_pred             EEEECCCCCEEEEEeCCCcEEEEeCCCCe--E--EEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCC
Q 004468           55 AISWNSKGSLLISGSDDTHINVWSYSSRK--L--LHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGR  130 (751)
Q Consensus        55 ~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~--~--~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~  130 (751)
                      .++.+.+|++||.- .|..|-|=..++.-  .  ..++.+.-.-.-.-++|+|+  +.+||.+...|+|+++|+.....-
T Consensus         2 ~~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD--~tlLa~a~S~G~i~vfdl~g~~lf   78 (282)
T PF15492_consen    2 HLALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPD--CTLLAYAESTGTIRVFDLMGSELF   78 (282)
T ss_pred             ceeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCC--CcEEEEEcCCCeEEEEecccceeE
Confidence            36678899988877 56677776554321  1  12232333344678999999  799999999999999999842211


Q ss_pred             CCCCCCCCCceeec-ccCCceeEEEEecCC-----CCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCc
Q 004468          131 GLDDNAITPSALYQ-CHTRRVKKLAVEVGN-----PHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGA  204 (751)
Q Consensus       131 ~~~~~~~~~~~~~~-~h~~~V~~l~~sp~~-----~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~  204 (751)
                      .+     .+...+. .-...|..+.|.+..     ...|+.-..+|.++-|-+..+....     ..  .+.        
T Consensus        79 ~I-----~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~-----y~--e~h--------  138 (282)
T PF15492_consen   79 VI-----PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQG-----YQ--ENH--------  138 (282)
T ss_pred             Ec-----CcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCc-----ce--eeE--------
Confidence            11     1111111 123556677775422     2356667778888877664332110     00  011        


Q ss_pred             eecccCCCCCccceEEEEEeCCCCcEEEEEeCC-----------CeEEEEeCCCCCCccccCCCCCCC-------Ccccc
Q 004468          205 KRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD-----------AFARLYDRRMLPPLTSCQKRMSPP-------PCVNY  266 (751)
Q Consensus       205 ~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D-----------~~IriwD~~~~~~~~~~~~~~~~~-------~~~~~  266 (751)
                        .+.........|.++.++|. .++|++|+..           .-+.-|.+-+..|..+........       .+...
T Consensus       139 --sfsf~~~yp~Gi~~~vy~p~-h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~  215 (282)
T PF15492_consen  139 --SFSFSSHYPHGINSAVYHPK-HRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLR  215 (282)
T ss_pred             --EEEecccCCCceeEEEEcCC-CCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceee
Confidence              11222224567999999995 5777777632           135566665555433321111000       11111


Q ss_pred             cccccc-ccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCC
Q 004468          267 FCPMHL-SEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG  312 (751)
Q Consensus       267 ~~~~~~-~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~  312 (751)
                      +....+ ..++.....|..+..||||+.|++...+|.|.||++-+-.
T Consensus       216 ~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~  262 (282)
T PF15492_consen  216 IPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLR  262 (282)
T ss_pred             ccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcch
Confidence            111111 1112223359999999999999999999999999998854

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.41  E-value=7.8e-05  Score=91.28  Aligned_cols=233  Identities=11%  Similarity=0.066  Sum_probs=133.8

Q ss_pred             EEEEECC-CCCEEEEEeCCCcEEEEeCCCCeEEEEecc-cC------------CcceEEEEEecCCCCcEEEE-EECCCc
Q 004468           54 NAISWNS-KGSLLISGSDDTHINVWSYSSRKLLHSIET-GH------------SANVFCTKFVPETSDELVVS-GAGDAE  118 (751)
Q Consensus        54 ~~l~~s~-dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~-~h------------~~~V~~v~fsp~s~~~~l~s-gs~Dg~  118 (751)
                      ..+++++ +|.++++-+..+.|.+||.. +..+..+.. +.            -.....|++.++  ++.|+. -...+.
T Consensus       571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~--gn~LYVaDt~n~~  647 (1057)
T PLN02919        571 GKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAK--KNLLYVADTENHA  647 (1057)
T ss_pred             ceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCC--CCEEEEEeCCCce
Confidence            3578876 46788888888999999976 444444422 11            123578899987  555444 445678


Q ss_pred             EEEEECCCCCCCCCCCCCCCCceeecc-----------------cCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCC
Q 004468          119 VRLFNLSRFSGRGLDDNAITPSALYQC-----------------HTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGS  181 (751)
Q Consensus       119 V~vwd~~~~~~~~~~~~~~~~~~~~~~-----------------h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~  181 (751)
                      |+++|+....           +.++.+                 --.....++|+|+++.++++.+.++.|++||..++.
T Consensus       648 Ir~id~~~~~-----------V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~  716 (1057)
T PLN02919        648 LREIDFVNET-----------VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGV  716 (1057)
T ss_pred             EEEEecCCCE-----------EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCe
Confidence            9999987532           111110                 012345799999777888999999999999987754


Q ss_pred             CCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCC
Q 004468          182 SCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPP  261 (751)
Q Consensus       182 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~  261 (751)
                      .....+.+.  ..     ...+..    ...........|+++|++..++++-+.++.|++||+.+.............+
T Consensus       717 v~~~~G~G~--~~-----~~~g~~----~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~  785 (1057)
T PLN02919        717 TRVFSGDGY--ER-----NLNGSS----GTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFS  785 (1057)
T ss_pred             EEEEecCCc--cc-----cCCCCc----cccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccC
Confidence            210000000  00     000000    0001123467799999644466677778999999988654211000000000


Q ss_pred             Ccccccccc-ccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCC
Q 004468          262 PCVNYFCPM-HLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG  312 (751)
Q Consensus       262 ~~~~~~~~~-~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~  312 (751)
                      .....+-.. ....... ......++|+++|+.+++.+.++.|++||..++.
T Consensus       786 ~~l~~fG~~dG~g~~~~-l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~  836 (1057)
T PLN02919        786 DNLFKFGDHDGVGSEVL-LQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKR  836 (1057)
T ss_pred             cccccccCCCCchhhhh-ccCCceeeEeCCCcEEEEECCCCEEEEEECCCCe
Confidence            000000000 0000000 1125689999999988888899999999998743

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.40  E-value=8.9e-07  Score=93.59  Aligned_cols=182  Identities=15%  Similarity=0.228  Sum_probs=121.8

Q ss_pred             EEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEE
Q 004468           85 LHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVW  164 (751)
Q Consensus        85 ~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~  164 (751)
                      +..+ +||...|..++-..+  .+-+++++.|.+|++|.++.. +...  ....+..+++.|+.+|.++.|-. +-+.++
T Consensus       728 L~nf-~GH~~~iRai~AidN--ENSFiSASkDKTVKLWSik~E-gD~~--~tsaCQfTY~aHkk~i~~igfL~-~lr~i~  800 (1034)
T KOG4190|consen  728 LCNF-TGHQEKIRAIAAIDN--ENSFISASKDKTVKLWSIKPE-GDEI--GTSACQFTYQAHKKPIHDIGFLA-DLRSIA  800 (1034)
T ss_pred             eecc-cCcHHHhHHHHhccc--ccceeeccCCceEEEEEeccc-cCcc--ccceeeeEhhhccCcccceeeee-ccceee
Confidence            3445 799999988887766  678999999999999999852 2111  11246778899999999999987 445554


Q ss_pred             EEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEe
Q 004468          165 SASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYD  244 (751)
Q Consensus       165 s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD  244 (751)
                        +.||.|.+||.--+....          .+.+..+.+          ....|+|+.- -+.+-+++.++...+|+++|
T Consensus       801 --ScD~giHlWDPFigr~La----------q~~dapk~~----------a~~~ikcl~n-v~~~iliAgcsaeSTVKl~D  857 (1034)
T KOG4190|consen  801 --SCDGGIHLWDPFIGRLLA----------QMEDAPKEG----------AGGNIKCLEN-VDRHILIAGCSAESTVKLFD  857 (1034)
T ss_pred             --eccCcceeecccccchhH----------hhhcCcccC----------CCceeEeccc-Ccchheeeeccchhhheeee
Confidence              558999999976655331          111111111          1223333321 11223444457899999999


Q ss_pred             CCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCC
Q 004468          245 RRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG  312 (751)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~  312 (751)
                      .|....+..+.           .+..     ...+..+.+++..+.|+.++++-++|+|.+.|.+++.
T Consensus       858 aRsce~~~E~k-----------Vcna-----~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~  909 (1034)
T KOG4190|consen  858 ARSCEWTCELK-----------VCNA-----PGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGK  909 (1034)
T ss_pred             cccccceeeEE-----------eccC-----CCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCc
Confidence            99866433221           1100     0112247899999999999999999999999999964

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.39  E-value=2.5e-05  Score=76.37  Aligned_cols=199  Identities=13%  Similarity=0.019  Sum_probs=132.0

Q ss_pred             EEEEEeCCCcEEEEeCCCCeEEEEecccCCcc--eEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCce
Q 004468           64 LLISGSDDTHINVWSYSSRKLLHSIETGHSAN--VFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSA  141 (751)
Q Consensus        64 ~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~--V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~  141 (751)
                      -+.-++.|.++++.++..+.....+   |..+  ++++..+|+  ++++++.+....|..|.+.......        ..
T Consensus       130 ~~~i~sndht~k~~~~~~~s~~~~~---h~~~~~~ns~~~snd--~~~~~~Vgds~~Vf~y~id~~sey~--------~~  196 (344)
T KOG4532|consen  130 PLNIASNDHTGKTMVVSGDSNKFAV---HNQNLTQNSLHYSND--PSWGSSVGDSRRVFRYAIDDESEYI--------EN  196 (344)
T ss_pred             ceeeccCCcceeEEEEecCccccee---eccccceeeeEEcCC--CceEEEecCCCcceEEEeCCcccee--------ee
Confidence            3556677788888777644332222   4333  889999999  8999999999999999998643321        12


Q ss_pred             -eecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEE
Q 004468          142 -LYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKS  220 (751)
Q Consensus       142 -~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~  220 (751)
                       .....++.=.+..|+. ....||++..||++.|||+|....+...                    .-...|.|.+.+..
T Consensus       197 ~~~a~t~D~gF~~S~s~-~~~~FAv~~Qdg~~~I~DVR~~~tpm~~--------------------~sstrp~hnGa~R~  255 (344)
T KOG4532|consen  197 IYEAPTSDHGFYNSFSE-NDLQFAVVFQDGTCAIYDVRNMATPMAE--------------------ISSTRPHHNGAFRV  255 (344)
T ss_pred             eEecccCCCceeeeecc-CcceEEEEecCCcEEEEEecccccchhh--------------------hcccCCCCCCceEE
Confidence             2233344456778887 5578999999999999999986532111                    11233458889999


Q ss_pred             EEEeCCCC-cEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeC
Q 004468          221 CDISSTRP-HLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS  299 (751)
Q Consensus       221 i~~sp~~~-~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~  299 (751)
                      +.|+|.+. .+|...-.-+.+.+.|+|++.....+.             +..-....|....|..-.|+.++.-+.+.+.
T Consensus       256 c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~-------------i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e  322 (344)
T KOG4532|consen  256 CRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIV-------------IPDDVERKHNTQHIFGTNFNNENESNDVKNE  322 (344)
T ss_pred             EEecCCCcceEEEEecCcceEEEEEcccCceeeEEe-------------cCccccccccccccccccccCCCcccccccc
Confidence            99998433 355555566899999999986433221             1111123344445888889988877776665


Q ss_pred             CCcEEEEECCC
Q 004468          300 GEHVYLMDVNH  310 (751)
Q Consensus       300 d~~I~lwdl~~  310 (751)
                      + +++=|++..
T Consensus       323 ~-~~ae~ni~s  332 (344)
T KOG4532|consen  323 L-QGAEYNILS  332 (344)
T ss_pred             h-hhheeeccc
Confidence            4 556666665

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.39  E-value=4e-06  Score=87.17  Aligned_cols=263  Identities=13%  Similarity=0.116  Sum_probs=173.8

Q ss_pred             cccccccccchhhh-ccccccEEeccCCCcEEEEEECCCCCEEEEEeC-CCcEEEEeCCCCeEEEEecccC-CcceEEEE
Q 004468           24 PDVNHSLQMHSSLV-RRLSQERELEGHQGCVNAISWNSKGSLLISGSD-DTHINVWSYSSRKLLHSIETGH-SANVFCTK  100 (751)
Q Consensus        24 ~~~~~~l~~~~~~i-~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~-Dg~I~IWd~~~~~~~~~l~~~h-~~~V~~v~  100 (751)
                      ..++..+++|...- .-...++.+..|-+.|..++.+-+|.++.|.+. |..++++|+.+-..+.-+.... .+.   +.
T Consensus        26 ASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~---a~  102 (558)
T KOG0882|consen   26 ASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGF---AE  102 (558)
T ss_pred             eecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCCCc---eE
Confidence            45677778887644 666788888999999999999999999999888 9999999988654442221111 121   22


Q ss_pred             EecCCCC----cEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEe
Q 004468          101 FVPETSD----ELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHD  176 (751)
Q Consensus       101 fsp~s~~----~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwD  176 (751)
                      |.... |    .+-++...++.|.|+|-.....        +....-.-|..+|..+.+.+ -+..++|....|.|.-|.
T Consensus       103 wv~sk-Gd~~s~IAVs~~~sg~i~VvD~~~d~~--------q~~~fkklH~sPV~~i~y~q-a~Ds~vSiD~~gmVEyWs  172 (558)
T KOG0882|consen  103 WVTSK-GDKISLIAVSLFKSGKIFVVDGFGDFC--------QDGYFKKLHFSPVKKIRYNQ-AGDSAVSIDISGMVEYWS  172 (558)
T ss_pred             EecCC-CCeeeeEEeecccCCCcEEECCcCCcC--------ccceecccccCceEEEEeec-cccceeeccccceeEeec
Confidence            22221 2    2333455688999999874321        23444556999999999999 667888998899999998


Q ss_pred             cCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCC
Q 004468          177 FRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQK  256 (751)
Q Consensus       177 lr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~  256 (751)
                      ....-..+        ...+.|.++...  -+...++.....+++.|+|+ +..+.+-+.|..||+++.++++.+..+..
T Consensus       173 ~e~~~qfP--------r~~l~~~~K~eT--dLy~f~K~Kt~pts~Efsp~-g~qistl~~DrkVR~F~~KtGklvqeiDE  241 (558)
T KOG0882|consen  173 AEGPFQFP--------RTNLNFELKHET--DLYGFPKAKTEPTSFEFSPD-GAQISTLNPDRKVRGFVFKTGKLVQEIDE  241 (558)
T ss_pred             CCCcccCc--------cccccccccccc--hhhcccccccCccceEEccc-cCcccccCcccEEEEEEeccchhhhhhhc
Confidence            77411100        012223332211  23445566778899999995 78999999999999999999987665543


Q ss_pred             CCCCCCcccc--ccccccc----------cCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 004468          257 RMSPPPCVNY--FCPMHLS----------EHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (751)
Q Consensus       257 ~~~~~~~~~~--~~~~~~~----------~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~  311 (751)
                      ......+...  +...+..          ...|....-+.+.|...|++|+-++.= -|+++++.+.
T Consensus       242 ~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~-gikvin~~tn  307 (558)
T KOG0882|consen  242 VLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTIL-GIKVINLDTN  307 (558)
T ss_pred             cchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeecce-eEEEEEeecC
Confidence            3211111110  0001100          012333345788999999999988765 4889999884

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.36  E-value=3.1e-06  Score=83.92  Aligned_cols=233  Identities=18%  Similarity=0.256  Sum_probs=142.4

Q ss_pred             CcEEEEEECCCCC--EEEEEeCCCcEEEEeCCCCe-------------------EE-----------------------E
Q 004468           51 GCVNAISWNSKGS--LLISGSDDTHINVWSYSSRK-------------------LL-----------------------H   86 (751)
Q Consensus        51 ~~V~~l~~s~dg~--~LaSgs~Dg~I~IWd~~~~~-------------------~~-----------------------~   86 (751)
                      ..|+.+.|..++.  .++..+.|++|+||.+....                   .+                       .
T Consensus        86 EKin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~r  165 (460)
T COG5170          86 EKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCR  165 (460)
T ss_pred             HHhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccce
Confidence            4589999987653  45555689999999865320                   00                       0


Q ss_pred             EecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeeccc-----CCceeEEEEecCCCC
Q 004468           87 SIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCH-----TRRVKKLAVEVGNPH  161 (751)
Q Consensus        87 ~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h-----~~~V~~l~~sp~~~~  161 (751)
                      .....|...|.++.|..+  ...+++ +.|-.|.+|++....+..       .+.-++.|     +..|++..|+|..-.
T Consensus       166 vyaNaH~yhiNSiS~NsD--~et~lS-aDdLrINLWnl~i~D~sF-------nIVDiKP~nmeeLteVItSaeFhp~~cn  235 (460)
T COG5170         166 VYANAHPYHINSISFNSD--KETLLS-ADDLRINLWNLEIIDGSF-------NIVDIKPHNMEELTEVITSAEFHPEMCN  235 (460)
T ss_pred             eccccceeEeeeeeecCc--hheeee-ccceeeeeccccccCCce-------EEEeccCccHHHHHHHHhhcccCHhHcc
Confidence            011468888999999988  466666 468899999998654321       12223333     456899999998888


Q ss_pred             EEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEE
Q 004468          162 VVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFAR  241 (751)
Q Consensus       162 ~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~Ir  241 (751)
                      +|.-.+..|.|++-|+|....|-...        .++..... .........-...|..+.|++. +++|++-.. -+|+
T Consensus       236 ~fmYSsSkG~Ikl~DlRq~alcdn~~--------klfe~~~D-~v~~~ff~eivsSISD~kFs~n-gryIlsRdy-ltvk  304 (460)
T COG5170         236 VFMYSSSKGEIKLNDLRQSALCDNSK--------KLFELTID-GVDVDFFEEIVSSISDFKFSDN-GRYILSRDY-LTVK  304 (460)
T ss_pred             eEEEecCCCcEEehhhhhhhhccCch--------hhhhhccC-cccchhHHHHhhhhcceEEcCC-CcEEEEecc-ceEE
Confidence            88888999999999999876552110        00000000 0001111123346788999994 778876544 6899


Q ss_pred             EEeCCCCC-CccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004468          242 LYDRRMLP-PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (751)
Q Consensus       242 iwD~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~  310 (751)
                      |||.++.+ ++.+.+     -.|...-....+.+ ...-+.--.+.||-|.+.+++|+..+..-+|-..+
T Consensus       305 iwDvnm~k~pikTi~-----~h~~l~~~l~d~YE-nDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~~s  368 (460)
T COG5170         305 IWDVNMAKNPIKTIP-----MHCDLMDELNDVYE-NDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPTDS  368 (460)
T ss_pred             EEecccccCCceeec-----hHHHHHHHHHhhhh-ccceeeeEEEEecCCcccccccccccceeeecccc
Confidence            99999865 222110     00100000000000 00111124578999999999999988888887555

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.36  E-value=4e-05  Score=80.32  Aligned_cols=120  Identities=14%  Similarity=0.197  Sum_probs=96.5

Q ss_pred             cCCCcEEEEEECCCCCEEEEEeCCC-cEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCC
Q 004468           48 GHQGCVNAISWNSKGSLLISGSDDT-HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSR  126 (751)
Q Consensus        48 gH~~~V~~l~~s~dg~~LaSgs~Dg-~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~  126 (751)
                      +|.+.|.-..+.-+++-++.|..|| .|-|+|..+++... + ...-++|.+++.+|+  |++++.+-....+.+.|+.+
T Consensus       357 ~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr-~-e~~lg~I~av~vs~d--GK~~vvaNdr~el~vididn  432 (668)
T COG4946         357 GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKR-I-EKDLGNIEAVKVSPD--GKKVVVANDRFELWVIDIDN  432 (668)
T ss_pred             CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEE-e-eCCccceEEEEEcCC--CcEEEEEcCceEEEEEEecC
Confidence            6888899999999999999999999 89999998776544 4 456789999999999  89999998888899999997


Q ss_pred             CCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCC----cEEEEecCCCCC
Q 004468          127 FSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG----TLRQHDFRQGSS  182 (751)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg----~I~iwDlr~~~~  182 (751)
                      +..          ...-+...+-|+.+.|+| ++++||-+--+|    .|+++|+..++.
T Consensus       433 gnv----------~~idkS~~~lItdf~~~~-nsr~iAYafP~gy~tq~Iklydm~~~Ki  481 (668)
T COG4946         433 GNV----------RLIDKSEYGLITDFDWHP-NSRWIAYAFPEGYYTQSIKLYDMDGGKI  481 (668)
T ss_pred             CCe----------eEecccccceeEEEEEcC-CceeEEEecCcceeeeeEEEEecCCCeE
Confidence            532          222233456789999999 778888776655    688999988653

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.34  E-value=7.1e-05  Score=74.49  Aligned_cols=195  Identities=12%  Similarity=0.089  Sum_probs=116.3

Q ss_pred             CcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccC------CcceEEEEEecCCC-C---cEEEEEECCCcEE
Q 004468           51 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGH------SANVFCTKFVPETS-D---ELVVSGAGDAEVR  120 (751)
Q Consensus        51 ~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h------~~~V~~v~fsp~s~-~---~~l~sgs~Dg~V~  120 (751)
                      ..=..++||||+.+||.+...|+|+|+|+.. ..+..+..++      ..+|..+.|.+... .   ..|+.-..+|.++
T Consensus        44 PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~  122 (282)
T PF15492_consen   44 PQWRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLR  122 (282)
T ss_pred             chheEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceee
Confidence            3445799999999999999999999999874 4444553332      35677777876521 0   2355556788888


Q ss_pred             EEECCCCCCCCCCCCCCCCceeec---ccCCceeEEEEecCCCCEEEEEeC-CC----------cEEEEecCCCCCCCCC
Q 004468          121 LFNLSRFSGRGLDDNAITPSALYQ---CHTRRVKKLAVEVGNPHVVWSASE-DG----------TLRQHDFRQGSSCPPA  186 (751)
Q Consensus       121 vwd~~~~~~~~~~~~~~~~~~~~~---~h~~~V~~l~~sp~~~~~l~s~s~-Dg----------~I~iwDlr~~~~~~~~  186 (751)
                      =|-+..++.+.     +...+.+.   .+...|.++.++|.. ++|+.||. ..          -+..|.+-.+.+-...
T Consensus       123 Sy~vs~gt~q~-----y~e~hsfsf~~~yp~Gi~~~vy~p~h-~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~  196 (282)
T PF15492_consen  123 SYLVSVGTNQG-----YQENHSFSFSSHYPHGINSAVYHPKH-RLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQ  196 (282)
T ss_pred             eEEEEcccCCc-----ceeeEEEEecccCCCceeEEEEcCCC-CEEEEeccCCCCCccccccccCceEEEEcCCCCcEEE
Confidence            77764322111     12233332   246789999999944 56555543 22          2445655544332110


Q ss_pred             CC-CCCcc-----ceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccC
Q 004468          187 GS-SHQEC-----RNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQ  255 (751)
Q Consensus       187 ~~-~~~~~-----~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~  255 (751)
                      .. .....     +.-++.+...  ............|..|.++| ++..||+...+|.|.+|++-++....+..
T Consensus       197 v~~~~~~~~~~~~~~~~~~~~~~--~~fs~~~~~~d~i~kmSlSP-dg~~La~ih~sG~lsLW~iPsL~~~~~W~  268 (282)
T PF15492_consen  197 VTSSEDDITASSKRRGLLRIPSF--KFFSRQGQEQDGIFKMSLSP-DGSLLACIHFSGSLSLWEIPSLRLQRSWK  268 (282)
T ss_pred             ccccCccccccccccceeeccce--eeeeccccCCCceEEEEECC-CCCEEEEEEcCCeEEEEecCcchhhcccc
Confidence            00 00000     0011111110  00111122467899999999 58999999999999999999887655543

>PRK01029 tolB translocation protein TolB; Provisional

Probab=98.34  E-value=2.7e-05  Score=86.40  Aligned_cols=164  Identities=15%  Similarity=0.070  Sum_probs=94.6

Q ss_pred             CCCcEEEEEECCCCCEEEEEeC-----CCcEEEEeCCCC--eEEEEecccCCcceEEEEEecCCCCcEEEEEE-CCCcEE
Q 004468           49 HQGCVNAISWNSKGSLLISGSD-----DTHINVWSYSSR--KLLHSIETGHSANVFCTKFVPETSDELVVSGA-GDAEVR  120 (751)
Q Consensus        49 H~~~V~~l~~s~dg~~LaSgs~-----Dg~I~IWd~~~~--~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs-~Dg~V~  120 (751)
                      ..+.....+|||||+.||..+.     |..+.+|++..+  .....+..++.+.....+|+|+  |+.|+..+ .++...
T Consensus       229 ~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPD--G~~Laf~s~~~g~~~  306 (428)
T PRK01029        229 LQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPD--GTRLVFVSNKDGRPR  306 (428)
T ss_pred             CCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCC--CCEEEEEECCCCCce
Confidence            3445557899999998886653     333455776642  2223331233344567899999  77766554 567666


Q ss_pred             EEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEe-CC--CcEEEEecCCCCCCCCCCCCCCccceEE
Q 004468          121 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSAS-ED--GTLRQHDFRQGSSCPPAGSSHQECRNIL  197 (751)
Q Consensus       121 vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s-~D--g~I~iwDlr~~~~~~~~~~~~~~~~~~l  197 (751)
                      ||.+......       .....+..+...+....|+|+ ++.|+..+ .+  ..|.+||+.+++..              
T Consensus       307 ly~~~~~~~g-------~~~~~lt~~~~~~~~p~wSPD-G~~Laf~~~~~g~~~I~v~dl~~g~~~--------------  364 (428)
T PRK01029        307 IYIMQIDPEG-------QSPRLLTKKYRNSSCPAWSPD-GKKIAFCSVIKGVRQICVYDLATGRDY--------------  364 (428)
T ss_pred             EEEEECcccc-------cceEEeccCCCCccceeECCC-CCEEEEEEcCCCCcEEEEEECCCCCeE--------------
Confidence            6654321100       113334445566778899995 55555444 33  35888888776521              


Q ss_pred             EecccCceecccCCCCCccceEEEEEeCCCCcEEEE-EeC--CCeEEEEeCCCCC
Q 004468          198 LDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLV-GGS--DAFARLYDRRMLP  249 (751)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~s-gs~--D~~IriwD~~~~~  249 (751)
                               .+..   ....+....|+|+ ++.|+. +..  ...|.++|+...+
T Consensus       365 ---------~Lt~---~~~~~~~p~wSpD-G~~L~f~~~~~g~~~L~~vdl~~g~  406 (428)
T PRK01029        365 ---------QLTT---SPENKESPSWAID-SLHLVYSAGNSNESELYLISLITKK  406 (428)
T ss_pred             ---------EccC---CCCCccceEECCC-CCEEEEEECCCCCceEEEEECCCCC
Confidence                     1111   1123456789995 566554 332  3568888886543

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.33  E-value=1.4e-06  Score=87.77  Aligned_cols=162  Identities=15%  Similarity=0.138  Sum_probs=111.7

Q ss_pred             EEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecC
Q 004468           99 TKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFR  178 (751)
Q Consensus        99 v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr  178 (751)
                      ++|+-+..+.. ++.+.+..|-+-|+.++-           .+.|. ....|.++.|.. .+.++..|...|.|..+|+|
T Consensus       217 CawSlni~gyh-fs~G~sqqv~L~nvetg~-----------~qsf~-sksDVfAlQf~~-s~nLv~~GcRngeI~~iDLR  282 (425)
T KOG2695|consen  217 CAWSLNIMGYH-FSVGLSQQVLLTNVETGH-----------QQSFQ-SKSDVFALQFAG-SDNLVFNGCRNGEIFVIDLR  282 (425)
T ss_pred             hhhhhccceee-ecccccceeEEEEeeccc-----------ccccc-cchhHHHHHhcc-cCCeeEecccCCcEEEEEee
Confidence            35654432333 566778888899998642           23333 567788888987 45788899999999999999


Q ss_pred             CCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCC
Q 004468          179 QGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRM  258 (751)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~  258 (751)
                      ...      .+...+...++               |...|+++..-..+..+|++.+.+|.|++||.|..+....     
T Consensus       283 ~rn------qG~~~~a~rly---------------h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~-----  336 (425)
T KOG2695|consen  283 CRN------QGNGWCAQRLY---------------HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKS-----  336 (425)
T ss_pred             ecc------cCCCcceEEEE---------------cCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccc-----
Confidence            874      23344545554               6677888776654467899999999999999998764211     


Q ss_pred             CCCCccccccccccccCCccccc-eEEEEEcCCCCEEEEEeCCCcEEEEECCCCC
Q 004468          259 SPPPCVNYFCPMHLSEHGRSSLH-LTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG  312 (751)
Q Consensus       259 ~~~~~~~~~~~~~~~~~g~~~~~-vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~  312 (751)
                           +..+       .||.+.. -.-+...+....+++++.|...+||.++.+.
T Consensus       337 -----V~qY-------eGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~gh  379 (425)
T KOG2695|consen  337 -----VMQY-------EGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGH  379 (425)
T ss_pred             -----eeee-------ecccccccccccccccccceEEEccCeeEEEEEecccCc
Confidence                 2222       2332211 1223455677788899999999999999864

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.32  E-value=2.3e-06  Score=83.05  Aligned_cols=167  Identities=20%  Similarity=0.216  Sum_probs=104.6

Q ss_pred             CCCCEEEEEeC-----CCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCC
Q 004468           60 SKGSLLISGSD-----DTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDD  134 (751)
Q Consensus        60 ~dg~~LaSgs~-----Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~  134 (751)
                      ..++.|.++..     -+..++|++...+.+..-.+. ...|.+++-+|.. ..++++|+.||.|-|||.+...      
T Consensus       142 ~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~-~~~v~~l~~hp~q-q~~v~cgt~dg~~~l~d~rn~~------  213 (319)
T KOG4714|consen  142 RHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKA-LDAVTALCSHPAQ-QHLVCCGTDDGIVGLWDARNVA------  213 (319)
T ss_pred             ecccEEecCCcceEeeccceeeecccccccccccccc-cccchhhhCCccc-ccEEEEecCCCeEEEEEccccc------
Confidence            34555555432     224556665433322211112 2349999999986 6788899999999999998642      


Q ss_pred             CCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEec---ccCceecccCC
Q 004468          135 NAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDL---RCGAKRSLADP  211 (751)
Q Consensus       135 ~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~  211 (751)
                         .+...+..|+.+++.+.|+|.++..|.++++||.+..||..+.-..    ...+......|-.   .......-...
T Consensus       214 ---~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~~~l~----i~~~~s~~s~WLsgD~v~s~i~i~~ll  286 (319)
T KOG4714|consen  214 ---MPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDASTTFLS----ISNQASVISSWLSGDPVKSRIEITSLL  286 (319)
T ss_pred             ---chHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCCceEE----ecCccccccccccCCcccceEeeeccc
Confidence               5678899999999999999999999999999999999998752110    0011111111100   00001111122


Q ss_pred             CCCccceEEEEEeCCCCcEEEEEeCCCeEEEEe
Q 004468          212 PKQTLSLKSCDISSTRPHLLLVGGSDAFARLYD  244 (751)
Q Consensus       212 ~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD  244 (751)
                      +.....|+++++.   +..+++|+.-+.|++++
T Consensus       287 ~~~~~SinsfDV~---g~~lVcgtd~eaIyl~~  316 (319)
T KOG4714|consen  287 PSRSLSINSFDVL---GPCLVCGTDAEAIYLTR  316 (319)
T ss_pred             cccceeeeeeecc---CceEEeccccceEEEec
Confidence            3334456666654   46899998888888875

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.31  E-value=0.00071  Score=69.51  Aligned_cols=253  Identities=13%  Similarity=0.131  Sum_probs=158.6

Q ss_pred             ccCCCcEEEEEECCCCCEEEEEeC---CCcEEEEeCCC--CeEEE--EecccCCcceEEEEEecCCCCcEEEEEEC-CCc
Q 004468           47 EGHQGCVNAISWNSKGSLLISGSD---DTHINVWSYSS--RKLLH--SIETGHSANVFCTKFVPETSDELVVSGAG-DAE  118 (751)
Q Consensus        47 ~gH~~~V~~l~~s~dg~~LaSgs~---Dg~I~IWd~~~--~~~~~--~l~~~h~~~V~~v~fsp~s~~~~l~sgs~-Dg~  118 (751)
                      -.+.+.++-|+|+|++++|-++-.   +|.|.-|.+..  |++..  .. ..-..+-..|+++++  +++|+++.. -|.
T Consensus        36 v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~-~~~g~~p~yvsvd~~--g~~vf~AnY~~g~  112 (346)
T COG2706          36 VAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQ-TLPGSPPCYVSVDED--GRFVFVANYHSGS  112 (346)
T ss_pred             ccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeecc-ccCCCCCeEEEECCC--CCEEEEEEccCce
Confidence            346778899999999999988865   47777776653  54322  11 112233378899998  888888764 578


Q ss_pred             EEEEECCCCCCCCCCCCCCCCceeecccCCc----------eeEEEEecCCCCEEEEEeC-CCcEEEEecCCCCCCCCCC
Q 004468          119 VRLFNLSRFSGRGLDDNAITPSALYQCHTRR----------VKKLAVEVGNPHVVWSASE-DGTLRQHDFRQGSSCPPAG  187 (751)
Q Consensus       119 V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~----------V~~l~~sp~~~~~l~s~s~-Dg~I~iwDlr~~~~~~~~~  187 (751)
                      |.++-+... +..      ........|.+.          +....+.| ++++|+++.. --.|.+|++..+...+...
T Consensus       113 v~v~p~~~d-G~l------~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP-~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~  184 (346)
T COG2706         113 VSVYPLQAD-GSL------QPVVQVVKHTGSGPHERQESPHVHSANFTP-DGRYLVVPDLGTDRIFLYDLDDGKLTPADP  184 (346)
T ss_pred             EEEEEcccC-Ccc------ccceeeeecCCCCCCccccCCccceeeeCC-CCCEEEEeecCCceEEEEEcccCccccccc
Confidence            999998752 222      222223335555          88889999 5566666642 2368899999776432110


Q ss_pred             CCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCC-CCccccCCCCCCCCcccc
Q 004468          188 SSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRML-PPLTSCQKRMSPPPCVNY  266 (751)
Q Consensus       188 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~-~~~~~~~~~~~~~~~~~~  266 (751)
                      .          .        +    .....-..|.|+|+..-..++.--+++|-+|..... ..+..++.-...      
T Consensus       185 ~----------~--------v----~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tl------  236 (346)
T COG2706         185 A----------E--------V----KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTL------  236 (346)
T ss_pred             c----------c--------c----CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccC------
Confidence            0          0        0    123445779999964444555667999999998764 222222211111      


Q ss_pred             ccccccccCCccccceEEEEEcCCCCEEEEEeC-CCcEEEEECCCCCccee----eeecCCCceeEEeCCCCCCcccCCC
Q 004468          267 FCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GEHVYLMDVNHAGGRAM----RYTVGDASKIMSFTPTLNGLELQPP  341 (751)
Q Consensus       267 ~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~-d~~I~lwdl~~~~~~~~----~~~~~~~~~~~~~sp~~~~~~~~~~  341 (751)
                        |...  .|  ..+...|..+|||++|.++-. ...|-+|.+........    ....+..++.+.++|..+-+..+..
T Consensus       237 --P~dF--~g--~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q  310 (346)
T COG2706         237 --PEDF--TG--TNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQ  310 (346)
T ss_pred             --cccc--CC--CCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEcc
Confidence              1111  11  224788999999999998865 56899998886532221    2233556888888888877766555


Q ss_pred             ccc
Q 004468          342 IHD  344 (751)
Q Consensus       342 ~~~  344 (751)
                      .++
T Consensus       311 ~sd  313 (346)
T COG2706         311 KSD  313 (346)
T ss_pred             CCC
Confidence            443

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.30  E-value=2.2e-06  Score=60.03  Aligned_cols=39  Identities=23%  Similarity=0.598  Sum_probs=35.9

Q ss_pred             CeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEE
Q 004468           82 RKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFN  123 (751)
Q Consensus        82 ~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd  123 (751)
                      ++++.++ .+|.+.|++++|+|+  +.+|+||+.|++|++||
T Consensus         1 g~~~~~~-~~h~~~i~~i~~~~~--~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTF-RGHSSSINSIAWSPD--GNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEE-ESSSSSEEEEEEETT--SSEEEEEETTSEEEEEE
T ss_pred             CeEEEEE-cCCCCcEEEEEEecc--cccceeeCCCCEEEEEC
Confidence            3567778 899999999999999  79999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.29  E-value=1.7e-05  Score=85.64  Aligned_cols=128  Identities=13%  Similarity=0.142  Sum_probs=107.3

Q ss_pred             hccccccEEec--cCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEE
Q 004468           37 VRRLSQERELE--GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGA  114 (751)
Q Consensus        37 i~~~~~~~~L~--gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs  114 (751)
                      +...++...|.  .|.+.|+++.|+.+-..|-|++.|+.+..|+....+.+... .+-+..+.+++.+|+  +..+++|+
T Consensus        87 ~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~-~~~~~~~~sl~is~D--~~~l~~as  163 (541)
T KOG4547|consen   87 VAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIW-KEQKPLVSSLCISPD--GKILLTAS  163 (541)
T ss_pred             ecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeee-ccCCCccceEEEcCC--CCEEEecc
Confidence            33444555554  69999999999999999999999999999999998888888 788889999999999  78999886


Q ss_pred             CCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecC-----CCCEEEEEeCCCcEEEEecCC
Q 004468          115 GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVG-----NPHVVWSASEDGTLRQHDFRQ  179 (751)
Q Consensus       115 ~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~-----~~~~l~s~s~Dg~I~iwDlr~  179 (751)
                        +.|++||+++.          +.+.+|.+|.++|.+++|...     +.++|.+...+.-|.+|-++.
T Consensus       164 --~~ik~~~~~~k----------evv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  164 --RQIKVLDIETK----------EVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             --ceEEEEEccCc----------eEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence              78999999975          668999999999999999763     234565566677788887766

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.24  E-value=9.4e-06  Score=88.62  Aligned_cols=241  Identities=12%  Similarity=0.149  Sum_probs=156.7

Q ss_pred             CCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCe---------------EEEEecccCCcceEEEEEecCCCCcEEEEEE
Q 004468           50 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK---------------LLHSIETGHSANVFCTKFVPETSDELVVSGA  114 (751)
Q Consensus        50 ~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~---------------~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs  114 (751)
                      ....+|++|+....++|.|+.||.++|-.+.+..               .-+++ .||.+.|.-+.|...  .+.|-|..
T Consensus        14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtL-eGH~~sV~vvTWNe~--~QKLTtSD   90 (1189)
T KOG2041|consen   14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTL-EGHNASVMVVTWNEN--NQKLTTSD   90 (1189)
T ss_pred             CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhh-ccCcceEEEEEeccc--cccccccC
Confidence            4567899999999999999999999999775421               11233 699999999999988  68999999


Q ss_pred             CCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccc
Q 004468          115 GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECR  194 (751)
Q Consensus       115 ~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~  194 (751)
                      .+|.|.||-+-.++--.        --.-......|.+++|+. +|..+...-+||.|.+=.+....             
T Consensus        91 t~GlIiVWmlykgsW~E--------EMiNnRnKSvV~SmsWn~-dG~kIcIvYeDGavIVGsvdGNR-------------  148 (1189)
T KOG2041|consen   91 TSGLIIVWMLYKGSWCE--------EMINNRNKSVVVSMSWNL-DGTKICIVYEDGAVIVGSVDGNR-------------  148 (1189)
T ss_pred             CCceEEEEeeecccHHH--------HHhhCcCccEEEEEEEcC-CCcEEEEEEccCCEEEEeeccce-------------
Confidence            99999999998643110        011123456789999998 66888888999998876665432             


Q ss_pred             eEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCcccccccccccc
Q 004468          195 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSE  274 (751)
Q Consensus       195 ~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (751)
                        +|+-.           -.......+.|+++ .+.++.+-..|.+.+||....=. .++.     ..|.-.. .+....
T Consensus       149 --IwgKe-----------Lkg~~l~hv~ws~D-~~~~Lf~~ange~hlydnqgnF~-~Kl~-----~~c~Vn~-tg~~s~  207 (1189)
T KOG2041|consen  149 --IWGKE-----------LKGQLLAHVLWSED-LEQALFKKANGETHLYDNQGNFE-RKLE-----KDCEVNG-TGIFSN  207 (1189)
T ss_pred             --ecchh-----------cchheccceeeccc-HHHHHhhhcCCcEEEecccccHH-Hhhh-----hceEEee-eeeecC
Confidence              22110           01223457789994 67888888889999999752100 0000     0010000 000011


Q ss_pred             CCccccceEEEEEc--------CCCCEEEEEeCCCcEEEEECCCCCcceeeeecCCCceeEEeCCCCCCcccCC
Q 004468          275 HGRSSLHLTHVTFS--------PNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQP  340 (751)
Q Consensus       275 ~g~~~~~vt~v~fs--------pdg~~Ll~~s~d~~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~  340 (751)
                      .+|   .|..+.|.        ||-..|+++...|.+.|..-.+.. .++.+..+-.+....|++++.-++...
T Consensus       208 ~~~---kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~-~Pvv~dtgm~~vgakWnh~G~vLAvcG  277 (1189)
T KOG2041|consen  208 FPT---KIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDP-EPVVVDTGMKIVGAKWNHNGAVLAVCG  277 (1189)
T ss_pred             CCc---cccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCC-CCeEEecccEeecceecCCCcEEEEcc
Confidence            111   13344443        588899999999999998766633 445555555555566777665554443

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.24  E-value=1.2e-05  Score=87.95  Aligned_cols=253  Identities=11%  Similarity=0.114  Sum_probs=155.2

Q ss_pred             hhccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEe-cccCCcceEEEEEecCCCCcEEEEEE
Q 004468           36 LVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSI-ETGHSANVFCTKFVPETSDELVVSGA  114 (751)
Q Consensus        36 ~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l-~~~h~~~V~~v~fsp~s~~~~l~sgs  114 (751)
                      ....+..-++|+||++.|.-+.|+.+.+.|-|...+|.|+||-+..|.....+ ....+..|.++.|..+  |..|+..-
T Consensus        57 a~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~d--G~kIcIvY  134 (1189)
T KOG2041|consen   57 AASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLD--GTKICIVY  134 (1189)
T ss_pred             cccccchhhhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCC--CcEEEEEE
Confidence            35566777899999999999999999999999999999999999887654433 2345678999999999  89999999


Q ss_pred             CCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccc
Q 004468          115 GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECR  194 (751)
Q Consensus       115 ~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~  194 (751)
                      .||.|.|=.++...   +      --+.++  ......+.|++ +..+++.+-..|.+.+||........    -+.+|.
T Consensus       135 eDGavIVGsvdGNR---I------wgKeLk--g~~l~hv~ws~-D~~~~Lf~~ange~hlydnqgnF~~K----l~~~c~  198 (1189)
T KOG2041|consen  135 EDGAVIVGSVDGNR---I------WGKELK--GQLLAHVLWSE-DLEQALFKKANGETHLYDNQGNFERK----LEKDCE  198 (1189)
T ss_pred             ccCCEEEEeeccce---e------cchhcc--hheccceeecc-cHHHHHhhhcCCcEEEecccccHHHh----hhhceE
Confidence            99999877665321   0      001111  11233678999 44666677788999999977643221    111221


Q ss_pred             eEEEecccCceecccCCCCCccceEEEEEe-------CCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccc
Q 004468          195 NILLDLRCGAKRSLADPPKQTLSLKSCDIS-------STRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYF  267 (751)
Q Consensus       195 ~~l~~~~~~~~~~~~~~~~~~~~v~~i~~s-------p~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~  267 (751)
                      .......+.          ....+..+.|+       |.+.-.++++-..|.+.|..-.+...                 
T Consensus       199 Vn~tg~~s~----------~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~-----------------  251 (1189)
T KOG2041|consen  199 VNGTGIFSN----------FPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPE-----------------  251 (1189)
T ss_pred             EeeeeeecC----------CCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCC-----------------
Confidence            111111111          11123334443       21345788888888777643322110                 


Q ss_pred             cccccccCCccccceEEEEEcCCCCEEEEEeCCC---------cEEEEECCCCCcceeeeecCCCceeEEeCCCCCCccc
Q 004468          268 CPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGE---------HVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLEL  338 (751)
Q Consensus       268 ~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~---------~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~  338 (751)
                       |...    ..+..+..+.|+++|..|++++.+.         .|.+|..-. .........+..+..++|-..+-.++.
T Consensus       252 -Pvv~----dtgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~G-~i~gtlkvpg~~It~lsWEg~gLriA~  325 (1189)
T KOG2041|consen  252 -PVVV----DTGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPYG-HIVGTLKVPGSCITGLSWEGTGLRIAI  325 (1189)
T ss_pred             -CeEE----ecccEeecceecCCCcEEEEccCcccccCccccceEEEeccch-hheEEEecCCceeeeeEEcCCceEEEE
Confidence             0000    1123588999999999999998742         455554333 222333334455556666555444443


Q ss_pred             C
Q 004468          339 Q  339 (751)
Q Consensus       339 ~  339 (751)
                      +
T Consensus       326 A  326 (1189)
T KOG2041|consen  326 A  326 (1189)
T ss_pred             E
Confidence            3

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.24  E-value=0.00068  Score=72.06  Aligned_cols=234  Identities=10%  Similarity=0.087  Sum_probs=133.0

Q ss_pred             CcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEE-E---------CCCcEEEEECCCCCCCCCCCCCCCCce
Q 004468           72 THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSG-A---------GDAEVRLFNLSRFSGRGLDDNAITPSA  141 (751)
Q Consensus        72 g~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sg-s---------~Dg~V~vwd~~~~~~~~~~~~~~~~~~  141 (751)
                      ++|.|.|..+++.+..+..|.....  + ++|+  ++.|+.+ +         .+..|.|||+.+.          +.+.
T Consensus        27 ~~v~ViD~~~~~v~g~i~~G~~P~~--~-~spD--g~~lyva~~~~~R~~~G~~~d~V~v~D~~t~----------~~~~   91 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDGGFLPNP--V-VASD--GSFFAHASTVYSRIARGKRTDYVEVIDPQTH----------LPIA   91 (352)
T ss_pred             ceEEEEECCCCEEEEEEEccCCCce--e-ECCC--CCEEEEEeccccccccCCCCCEEEEEECccC----------cEEe
Confidence            8999999999999999866654443  4 9999  6666655 4         5889999999975          3333


Q ss_pred             eeccc-------CCceeEEEEecCCCCEEEEEe-C-CCcEEEEecCCCCCCCCCCCCCCccceEEEe--------cccCc
Q 004468          142 LYQCH-------TRRVKKLAVEVGNPHVVWSAS-E-DGTLRQHDFRQGSSCPPAGSSHQECRNILLD--------LRCGA  204 (751)
Q Consensus       142 ~~~~h-------~~~V~~l~~sp~~~~~l~s~s-~-Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~--------~~~~~  204 (751)
                      .+.--       ......++++|+ +++++... . +..|-+.|+.+++.......  ..|..++..        ...+.
T Consensus        92 ~i~~p~~p~~~~~~~~~~~~ls~d-gk~l~V~n~~p~~~V~VvD~~~~kvv~ei~v--p~~~~vy~t~e~~~~~~~~Dg~  168 (352)
T TIGR02658        92 DIELPEGPRFLVGTYPWMTSLTPD-NKTLLFYQFSPSPAVGVVDLEGKAFVRMMDV--PDCYHIFPTANDTFFMHCRDGS  168 (352)
T ss_pred             EEccCCCchhhccCccceEEECCC-CCEEEEecCCCCCEEEEEECCCCcEEEEEeC--CCCcEEEEecCCccEEEeecCc
Confidence            33321       122346889995 45554443 3 78999999999875432211  112222111        11111


Q ss_pred             eecccCCCCCccceEEE--------------EEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCcccccccc
Q 004468          205 KRSLADPPKQTLSLKSC--------------DISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPM  270 (751)
Q Consensus       205 ~~~~~~~~~~~~~v~~i--------------~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (751)
                      ...+.........+...              .|.+.++.++.+... |.|.+.|+.........        .+..+...
T Consensus       169 ~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~--------~~~~~~~~  239 (352)
T TIGR02658       169 LAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLP--------AIEAFTEA  239 (352)
T ss_pred             eEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecc--------eeeecccc
Confidence            11100000000001111              345535667766666 99999996543311100        00000000


Q ss_pred             ccccCCccccceEEEEEcCCCCEEEEEeC----------CCcEEEEECCCCCcceeeeecCCCceeEEeCCCCC
Q 004468          271 HLSEHGRSSLHLTHVTFSPNGEEVLLSYS----------GEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLN  334 (751)
Q Consensus       271 ~~~~~g~~~~~vt~v~fspdg~~Ll~~s~----------d~~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp~~~  334 (751)
                      .. ..+-....+.-++++|+|++|++...          .+.|.++|..+.+ .......+..+..++++|+.+
T Consensus       240 ~~-~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~k-vi~~i~vG~~~~~iavS~Dgk  311 (352)
T TIGR02658       240 EK-ADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGK-RLRKIELGHEIDSINVSQDAK  311 (352)
T ss_pred             cc-ccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCe-EEEEEeCCCceeeEEECCCCC
Confidence            00 00111112445999999999998542          2589999998854 444455577888999999987

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.24  E-value=2.5e-05  Score=87.94  Aligned_cols=186  Identities=16%  Similarity=0.209  Sum_probs=133.5

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCc
Q 004468           61 KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPS  140 (751)
Q Consensus        61 dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~  140 (751)
                      ++..++-|+--..+..+|+.+.+..... .-..+.|+-++..    ++++.+|...|+|.+-|..+.          +.+
T Consensus       146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~-~v~a~~v~imR~N----nr~lf~G~t~G~V~LrD~~s~----------~~i  210 (1118)
T KOG1275|consen  146 GPSTLIMGGLQEKLIHIDLNTEKETRTT-NVSASGVTIMRYN----NRNLFCGDTRGTVFLRDPNSF----------ETI  210 (1118)
T ss_pred             CCcceeecchhhheeeeecccceeeeee-eccCCceEEEEec----CcEEEeecccceEEeecCCcC----------cee
Confidence            4567777877778888898887766655 2223335555533    689999999999999999875          779


Q ss_pred             eeecccCCceeEEEEecCCCCEEEEEeC---------CCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCC
Q 004468          141 ALYQCHTRRVKKLAVEVGNPHVVWSASE---------DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADP  211 (751)
Q Consensus       141 ~~~~~h~~~V~~l~~sp~~~~~l~s~s~---------Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  211 (751)
                      +++.+|++.|..+..   .+++|++||.         |..|++||+|..+.+.+....                      
T Consensus       211 ht~~aHs~siSDfDv---~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~----------------------  265 (1118)
T KOG1275|consen  211 HTFDAHSGSISDFDV---QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFP----------------------  265 (1118)
T ss_pred             eeeeccccceeeeec---cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccc----------------------
Confidence            999999999988876   4578888876         556899999987754322110                      


Q ss_pred             CCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCC
Q 004468          212 PKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNG  291 (751)
Q Consensus       212 ~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg  291 (751)
                          ..-.-+.|.|.=...+++++..|...+-|..+...         |+..+..+.|        .+..+..+.+|++|
T Consensus       266 ----~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsN---------P~~~~~~v~p--------~~s~i~~fDiSsn~  324 (1118)
T KOG1275|consen  266 ----YGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSN---------PPAGVKMVNP--------NGSGISAFDISSNG  324 (1118)
T ss_pred             ----cCchhhhhcccccceEEEEecccceeeccccccCC---------CccceeEEcc--------CCCcceeEEecCCC
Confidence                11133567776677899999999999998554321         1111222211        11138999999999


Q ss_pred             CEEEEEeCCCcEEEEE
Q 004468          292 EEVLLSYSGEHVYLMD  307 (751)
Q Consensus       292 ~~Ll~~s~d~~I~lwd  307 (751)
                      +.++.+-.+|.|.+|-
T Consensus       325 ~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  325 DALAFGDHEGHVNLWA  340 (1118)
T ss_pred             ceEEEecccCcEeeec
Confidence            9999999999999997

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.24  E-value=0.00045  Score=76.29  Aligned_cols=193  Identities=9%  Similarity=0.064  Sum_probs=111.5

Q ss_pred             cEEEEEECCCCCE-EEEEeC---CCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEE-EEEECC--CcEEEEEC
Q 004468           52 CVNAISWNSKGSL-LISGSD---DTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELV-VSGAGD--AEVRLFNL  124 (751)
Q Consensus        52 ~V~~l~~s~dg~~-LaSgs~---Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l-~sgs~D--g~V~vwd~  124 (751)
                      .+..-.|+|||+. ++..+.   +..|.++|+.+++.....  ...+.+....|+|+  |+.| ++.+.+  ..|.++|+
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt--~~~g~~~~~~~SPD--G~~la~~~~~~g~~~Iy~~dl  264 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA--SSQGMLVVSDVSKD--GSKLLLTMAPKGQPDIYLYDT  264 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEe--cCCCcEEeeEECCC--CCEEEEEEccCCCcEEEEEEC
Confidence            6778999999984 664443   356888999887654433  34566677889999  6544 455444  45777777


Q ss_pred             CCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCC--cEEEEecCCCCCCCCCCCCCCccceEEEeccc
Q 004468          125 SRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG--TLRQHDFRQGSSCPPAGSSHQECRNILLDLRC  202 (751)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg--~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~  202 (751)
                      ..+.           ...+..+........|+|++..++++....|  .|.+.|+.+++..                   
T Consensus       265 ~~g~-----------~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~-------------------  314 (419)
T PRK04043        265 NTKT-----------LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVE-------------------  314 (419)
T ss_pred             CCCc-----------EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeE-------------------
Confidence            6432           2233333333345679996555555554444  4666666655421                   


Q ss_pred             CceecccCCCCCccceEEEEEeCCCCcEEEEEeCC---------CeEEEEeCCCCCCccccCCCCCCCCccccccccccc
Q 004468          203 GAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD---------AFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLS  273 (751)
Q Consensus       203 ~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D---------~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (751)
                          .+.... .  .  ...|+|+ +++|+..+..         ..|.+.|+..+...              .+..    
T Consensus       315 ----rlt~~g-~--~--~~~~SPD-G~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~--------------~LT~----  366 (419)
T PRK04043        315 ----QVVFHG-K--N--NSSVSTY-KNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR--------------RLTA----  366 (419)
T ss_pred             ----eCccCC-C--c--CceECCC-CCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE--------------ECCC----
Confidence                111110 1  1  1379996 5655555433         36777787655321              0100    


Q ss_pred             cCCccccceEEEEEcCCCCEEEEEeCC---CcEEEEECCCC
Q 004468          274 EHGRSSLHLTHVTFSPNGEEVLLSYSG---EHVYLMDVNHA  311 (751)
Q Consensus       274 ~~g~~~~~vt~v~fspdg~~Ll~~s~d---~~I~lwdl~~~  311 (751)
                       .+    ......|+|||+.|+.....   ..+.+.+++..
T Consensus       367 -~~----~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~  402 (419)
T PRK04043        367 -NG----VNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYN  402 (419)
T ss_pred             -CC----CcCCeEECCCCCEEEEEEccCCcEEEEEEecCCC
Confidence             01    12247899999988766542   34777777663

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.16  E-value=0.00032  Score=73.81  Aligned_cols=190  Identities=13%  Similarity=0.138  Sum_probs=128.2

Q ss_pred             CCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccc------CCcceE-----EEE-EecCCCCcEEEEEECCCcEEEEECCC
Q 004468           59 NSKGSLLISGSDDTHINVWSYSSRKLLHSIETG------HSANVF-----CTK-FVPETSDELVVSGAGDAEVRLFNLSR  126 (751)
Q Consensus        59 s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~------h~~~V~-----~v~-fsp~s~~~~l~sgs~Dg~V~vwd~~~  126 (751)
                      +.||+.++-. .-|.|.++|..+..... +..+      ...+.+     -+. |++-. |++++..|. |.+.|.+...
T Consensus       275 nsDGkrIvFq-~~GdIylydP~td~lek-ldI~lpl~rk~k~~k~~~pskyledfa~~~-Gd~ia~VSR-GkaFi~~~~~  350 (668)
T COG4946         275 NSDGKRIVFQ-NAGDIYLYDPETDSLEK-LDIGLPLDRKKKQPKFVNPSKYLEDFAVVN-GDYIALVSR-GKAFIMRPWD  350 (668)
T ss_pred             CCCCcEEEEe-cCCcEEEeCCCcCccee-eecCCccccccccccccCHHHhhhhhccCC-CcEEEEEec-CcEEEECCCC
Confidence            3467766533 44679999987654322 2111      111111     112 55554 789888876 6777776653


Q ss_pred             CCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCC-cEEEEecCCCCCCCCCCCCCCccceEEEecccCce
Q 004468          127 FSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG-TLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAK  205 (751)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg-~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~  205 (751)
                      +            -..-.+|.+.|+-..+.. ++.-++.|..|| .+-++|.++++..                      
T Consensus       351 ~------------~~iqv~~~~~VrY~r~~~-~~e~~vigt~dgD~l~iyd~~~~e~k----------------------  395 (668)
T COG4946         351 G------------YSIQVGKKGGVRYRRIQV-DPEGDVIGTNDGDKLGIYDKDGGEVK----------------------  395 (668)
T ss_pred             C------------eeEEcCCCCceEEEEEcc-CCcceEEeccCCceEEEEecCCceEE----------------------
Confidence            2            223346788888888876 556788999999 8999999987621                      


Q ss_pred             ecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEE
Q 004468          206 RSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHV  285 (751)
Q Consensus       206 ~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v  285 (751)
                          ...+.-..|.++..+| ++++++++.....|.++|+.++.....                    .+.. ..-|+.+
T Consensus       396 ----r~e~~lg~I~av~vs~-dGK~~vvaNdr~el~vididngnv~~i--------------------dkS~-~~lItdf  449 (668)
T COG4946         396 ----RIEKDLGNIEAVKVSP-DGKKVVVANDRFELWVIDIDNGNVRLI--------------------DKSE-YGLITDF  449 (668)
T ss_pred             ----EeeCCccceEEEEEcC-CCcEEEEEcCceEEEEEEecCCCeeEe--------------------cccc-cceeEEE
Confidence                1112345788999999 489999999999999999998763210                    0111 1249999


Q ss_pred             EEcCCCCEEEEEeCC----CcEEEEECCCCCc
Q 004468          286 TFSPNGEEVLLSYSG----EHVYLMDVNHAGG  313 (751)
Q Consensus       286 ~fspdg~~Ll~~s~d----~~I~lwdl~~~~~  313 (751)
                      .|+|++++++-+-.+    ..|+|||+.+++.
T Consensus       450 ~~~~nsr~iAYafP~gy~tq~Iklydm~~~Ki  481 (668)
T COG4946         450 DWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKI  481 (668)
T ss_pred             EEcCCceeEEEecCcceeeeeEEEEecCCCeE
Confidence            999999999987665    4899999999653

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.11  E-value=1.4e-05  Score=85.85  Aligned_cols=115  Identities=22%  Similarity=0.204  Sum_probs=98.8

Q ss_pred             CcchhHHHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCC
Q 004468          359 GLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDS  438 (751)
Q Consensus       359 ~~~~~~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~  438 (751)
                      .+.........++..+..|. |..||..|.++|..-+++      +.+|||||+++++-.-   .-.|+.||+++++++|
T Consensus       354 ~pe~A~e~r~kGne~Fk~gd-y~~Av~~YteAIkr~P~D------a~lYsNRAac~~kL~~---~~~aL~Da~~~ieL~p  423 (539)
T KOG0548|consen  354 NPEKAEEEREKGNEAFKKGD-YPEAVKHYTEAIKRDPED------ARLYSNRAACYLKLGE---YPEALKDAKKCIELDP  423 (539)
T ss_pred             ChhHHHHHHHHHHHHHhccC-HHHHHHHHHHHHhcCCch------hHHHHHHHHHHHHHhh---HHHHHHHHHHHHhcCc
Confidence            44556667777888888888 999999999999977665      6699999999998764   5568999999999999


Q ss_pred             CCcchHHHHHHHHHHhcchHHHHHHHHHhcccCCCChhhhHHHHH
Q 004468          439 SSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVEN  483 (751)
Q Consensus       439 ~~~~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~~~~~~~~~  483 (751)
                      +.+|+++|.+.||..+.++..|+++........|....+..++..
T Consensus       424 ~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~r  468 (539)
T KOG0548|consen  424 NFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRR  468 (539)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHH
Confidence            999999999999999999999999999999988987776655543

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.07  E-value=1.5e-05  Score=80.49  Aligned_cols=163  Identities=14%  Similarity=0.191  Sum_probs=111.9

Q ss_pred             EECC--CCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCC
Q 004468           57 SWNS--KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDD  134 (751)
Q Consensus        57 ~~s~--dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~  134 (751)
                      +|+-  .|-. ++.+.+..|-|-|+++|-. ..|  ..++.|+++.|.-.  ++++..|...|.|.+.|++....     
T Consensus       218 awSlni~gyh-fs~G~sqqv~L~nvetg~~-qsf--~sksDVfAlQf~~s--~nLv~~GcRngeI~~iDLR~rnq-----  286 (425)
T KOG2695|consen  218 AWSLNIMGYH-FSVGLSQQVLLTNVETGHQ-QSF--QSKSDVFALQFAGS--DNLVFNGCRNGEIFVIDLRCRNQ-----  286 (425)
T ss_pred             hhhhccceee-ecccccceeEEEEeecccc-ccc--ccchhHHHHHhccc--CCeeEecccCCcEEEEEeeeccc-----
Confidence            5543  2434 5666777888889887643 333  25678999999987  78999999999999999986421     


Q ss_pred             CCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCC
Q 004468          135 NAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQ  214 (751)
Q Consensus       135 ~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  214 (751)
                      .+..+.+.+. |...|+++..-..+...|++.+.+|+|++||+|.-+....                      +....+|
T Consensus       287 G~~~~a~rly-h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~----------------------V~qYeGH  343 (425)
T KOG2695|consen  287 GNGWCAQRLY-HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKS----------------------VMQYEGH  343 (425)
T ss_pred             CCCcceEEEE-cCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccc----------------------eeeeecc
Confidence            1124455554 8999999987765667888999999999999997653210                      1111111


Q ss_pred             cc--ceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCcccc
Q 004468          215 TL--SLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSC  254 (751)
Q Consensus       215 ~~--~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~  254 (751)
                      ..  .-.-+-+.+. ...+++++.|...|||.++.+..+.++
T Consensus       344 vN~~a~l~~~v~~e-eg~I~s~GdDcytRiWsl~~ghLl~ti  384 (425)
T KOG2695|consen  344 VNLSAYLPAHVKEE-EGSIFSVGDDCYTRIWSLDSGHLLCTI  384 (425)
T ss_pred             cccccccccccccc-cceEEEccCeeEEEEEecccCceeecc
Confidence            11  1111234453 467888999999999999988766544

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.05  E-value=0.0015  Score=66.84  Aligned_cols=220  Identities=12%  Similarity=0.071  Sum_probs=131.2

Q ss_pred             EEEECC-CCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEe-cCCCCcEEEEEECCCcEEEEECCCCCCCCC
Q 004468           55 AISWNS-KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV-PETSDELVVSGAGDAEVRLFNLSRFSGRGL  132 (751)
Q Consensus        55 ~l~~s~-dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fs-p~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~  132 (751)
                      ++.|.+ +|.++.+--..+.|..|+..++.....- ...   ...+++. ++  +.+ +.+... .+.++|+.++.-   
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~-~~~---~~G~~~~~~~--g~l-~v~~~~-~~~~~d~~~g~~---   72 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVID-LPG---PNGMAFDRPD--GRL-YVADSG-GIAVVDPDTGKV---   72 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEE-SSS---EEEEEEECTT--SEE-EEEETT-CEEEEETTTTEE---
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEe-cCC---CceEEEEccC--CEE-EEEEcC-ceEEEecCCCcE---
Confidence            578988 7888888888999999999887664322 111   7777787 55  444 444554 455558876421   


Q ss_pred             CCCCCCCceeec--c-cCCceeEEEEecCCCCEEEEEeCC--------CcEEEEecCCCCCCCCCCCCCCccceEEEecc
Q 004468          133 DDNAITPSALYQ--C-HTRRVKKLAVEVGNPHVVWSASED--------GTLRQHDFRQGSSCPPAGSSHQECRNILLDLR  201 (751)
Q Consensus       133 ~~~~~~~~~~~~--~-h~~~V~~l~~sp~~~~~l~s~s~D--------g~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~  201 (751)
                           +.+....  . .....+.+++.| ++++.++....        |.|..++.. ++.            ..+..  
T Consensus        73 -----~~~~~~~~~~~~~~~~ND~~vd~-~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~------------~~~~~--  131 (246)
T PF08450_consen   73 -----TVLADLPDGGVPFNRPNDVAVDP-DGNLYVTDSGGGGASGIDPGSVYRIDPD-GKV------------TVVAD--  131 (246)
T ss_dssp             -----EEEEEEETTCSCTEEEEEEEE-T-TS-EEEEEECCBCTTCGGSEEEEEEETT-SEE------------EEEEE--
T ss_pred             -----EEEeeccCCCcccCCCceEEEcC-CCCEEEEecCCCccccccccceEEECCC-CeE------------EEEec--
Confidence                 2222221  1 345678999999 56776665543        445555554 220            11111  


Q ss_pred             cCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCC-ccccCCCCCCCCccccccccccccCCcccc
Q 004468          202 CGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPP-LTSCQKRMSPPPCVNYFCPMHLSEHGRSSL  280 (751)
Q Consensus       202 ~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  280 (751)
                                  .....+.|+|+|++..++++-+..+.|..|++..... +..          .+.+  .....  . ..
T Consensus       132 ------------~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~----------~~~~--~~~~~--~-~g  184 (246)
T PF08450_consen  132 ------------GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSN----------RRVF--IDFPG--G-PG  184 (246)
T ss_dssp             ------------EESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEE----------EEEE--EE-SS--S-SC
T ss_pred             ------------CcccccceEECCcchheeecccccceeEEEeccccccceee----------eeeE--EEcCC--C-Cc
Confidence                        1234678999996444556777888999999864321 110          0111  00100  0 11


Q ss_pred             ceEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcceeeeecCCCceeEEeC-CCCC
Q 004468          281 HLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFT-PTLN  334 (751)
Q Consensus       281 ~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~~~~~~~~~~~~~~s-p~~~  334 (751)
                      ..-.++++.+|+..++....+.|.++|.+ ++...........+..++|. |+.+
T Consensus       185 ~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~~~~  238 (246)
T PF08450_consen  185 YPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFGGPDGK  238 (246)
T ss_dssp             EEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEESTTSS
T ss_pred             CCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEECCCCC
Confidence            36789999999988888889999999988 45443333334567777873 4443

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.05  E-value=0.00025  Score=79.37  Aligned_cols=166  Identities=14%  Similarity=0.164  Sum_probs=111.6

Q ss_pred             EeccCCCcEEEEEECCC-------------CCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecC---CCCc
Q 004468           45 ELEGHQGCVNAISWNSK-------------GSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPE---TSDE  108 (751)
Q Consensus        45 ~L~gH~~~V~~l~~s~d-------------g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~---s~~~  108 (751)
                      -|..|.|.|.-..+.-+             |.++||||.||+|.|-.+.+.+...++  ....++.+|+++|+   ...+
T Consensus        53 ~~GtH~g~v~~~~~~~~~~~~~~~s~~~~~Gey~asCS~DGkv~I~sl~~~~~~~~~--df~rpiksial~Pd~~~~~sk  130 (846)
T KOG2066|consen   53 ALGTHRGAVYLTTCQGNPKTNFDHSSSILEGEYVASCSDDGKVVIGSLFTDDEITQY--DFKRPIKSIALHPDFSRQQSK  130 (846)
T ss_pred             eeccccceEEEEecCCcccccccccccccCCceEEEecCCCcEEEeeccCCccceeE--ecCCcceeEEeccchhhhhhh
Confidence            45667777776666544             999999999999999999888877766  35678999999998   1246


Q ss_pred             EEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCC
Q 004468          109 LVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGS  188 (751)
Q Consensus       109 ~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~  188 (751)
                      .+++|+.-| +.++.-.-...        +....+..-.++|.++.|.   +++++-++.+| |++||+.+.+.+.....
T Consensus       131 ~fv~GG~ag-lvL~er~wlgn--------k~~v~l~~~eG~I~~i~W~---g~lIAWand~G-v~vyd~~~~~~l~~i~~  197 (846)
T KOG2066|consen  131 QFVSGGMAG-LVLSERNWLGN--------KDSVVLSEGEGPIHSIKWR---GNLIAWANDDG-VKVYDTPTRQRLTNIPP  197 (846)
T ss_pred             heeecCcce-EEEehhhhhcC--------ccceeeecCccceEEEEec---CcEEEEecCCC-cEEEeccccceeeccCC
Confidence            789999888 77765442211        1122455668899999994   57888887776 78999988764321111


Q ss_pred             CCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCC
Q 004468          189 SHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM  247 (751)
Q Consensus       189 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~  247 (751)
                      .+                   ..+........+.|.+.  ..|+.|=. .+|+|..++.
T Consensus       198 p~-------------------~~~R~e~fpphl~W~~~--~~LVIGW~-d~v~i~~I~~  234 (846)
T KOG2066|consen  198 PS-------------------QSVRPELFPPHLHWQDE--DRLVIGWG-DSVKICSIKK  234 (846)
T ss_pred             CC-------------------CCCCcccCCCceEecCC--CeEEEecC-CeEEEEEEec
Confidence            10                   00111222335667763  56666544 4788888873

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.02  E-value=6.4e-05  Score=78.51  Aligned_cols=221  Identities=12%  Similarity=0.070  Sum_probs=141.4

Q ss_pred             CCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCC--Ce-EEEEecccCCcceEEEEEecCCCCcEEEEEEC-CCcEEEEEC
Q 004468           49 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSS--RK-LLHSIETGHSANVFCTKFVPETSDELVVSGAG-DAEVRLFNL  124 (751)
Q Consensus        49 H~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~--~~-~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~-Dg~V~vwd~  124 (751)
                      |.+.|+.+.-+ -.+++.+++.||.++.|....  +. .+..+ ..|.+.|.+++.+-+  +-++.|.+. |..++++|+
T Consensus         8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhF-raHL~~I~sl~~S~d--g~L~~Sv~d~Dhs~KvfDv   83 (558)
T KOG0882|consen    8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHF-RAHLGVILSLAVSYD--GWLFRSVEDPDHSVKVFDV   83 (558)
T ss_pred             ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhh-HHHHHHHHhhhcccc--ceeEeeccCcccceeEEEe
Confidence            67777766443 567999999999999998653  32 23333 689999999999988  788999777 999999999


Q ss_pred             CCCCCCCCCCCCCCCceeecccCCceeEEEEecCCC----CEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEec
Q 004468          125 SRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNP----HVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDL  200 (751)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~----~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~  200 (751)
                      ....-          +..++ -......+.|....+    .+-++.-.+|.|.++|-+...+.                 
T Consensus        84 En~Dm----------inmiK-L~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q-----------------  135 (558)
T KOG0882|consen   84 ENFDM----------INMIK-LVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQ-----------------  135 (558)
T ss_pred             eccch----------hhhcc-cccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCc-----------------
Confidence            86421          11111 011112233332122    23334456789999997664321                 


Q ss_pred             ccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCcccc
Q 004468          201 RCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSL  280 (751)
Q Consensus       201 ~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  280 (751)
                            .......|..+|.++.++|. +..+++....|.|.-|....  +................    .+.+......
T Consensus       136 ------~~~fkklH~sPV~~i~y~qa-~Ds~vSiD~~gmVEyWs~e~--~~qfPr~~l~~~~K~eT----dLy~f~K~Kt  202 (558)
T KOG0882|consen  136 ------DGYFKKLHFSPVKKIRYNQA-GDSAVSIDISGMVEYWSAEG--PFQFPRTNLNFELKHET----DLYGFPKAKT  202 (558)
T ss_pred             ------cceecccccCceEEEEeecc-ccceeeccccceeEeecCCC--cccCccccccccccccc----hhhccccccc
Confidence                  11222337789999999995 78899999999999998762  11100000000000000    0111111122


Q ss_pred             ceEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcc
Q 004468          281 HLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGR  314 (751)
Q Consensus       281 ~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~  314 (751)
                      ..+++.|+|+|..+.+-+.|..|++|++.+++..
T Consensus       203 ~pts~Efsp~g~qistl~~DrkVR~F~~KtGklv  236 (558)
T KOG0882|consen  203 EPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLV  236 (558)
T ss_pred             CccceEEccccCcccccCcccEEEEEEeccchhh
Confidence            4789999999999999999999999999997543

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.02  E-value=0.00022  Score=79.11  Aligned_cols=233  Identities=14%  Similarity=0.105  Sum_probs=148.9

Q ss_pred             hccccccEEeccCCCcEEEEEECCC------C------CEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecC
Q 004468           37 VRRLSQERELEGHQGCVNAISWNSK------G------SLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPE  104 (751)
Q Consensus        37 i~~~~~~~~L~gH~~~V~~l~~s~d------g------~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~  104 (751)
                      ..+++.++.++-|+..|+.+.|.|-      +      -+||++.-.|.|.|||...+..+..+ ..|...|..+.|.|.
T Consensus        42 s~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l-~~~~~~~qdl~W~~~  120 (1062)
T KOG1912|consen   42 SRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWL-SHSNDSVQDLCWVPA  120 (1062)
T ss_pred             hhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhh-cCCCcchhheeeeec
Confidence            3456788889999999999999872      1      26888888999999999988888878 788999999999987


Q ss_pred             CCC--cEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCC
Q 004468          105 TSD--ELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSS  182 (751)
Q Consensus       105 s~~--~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~  182 (751)
                      .+.  .+|+.-..-.+|.+|+..++          +....+..-.....|+.+.|.+.+.|..-+..|.+.+-+.-..+.
T Consensus       121 rd~Srd~LlaIh~ss~lvLwntdtG----------~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~se  190 (1062)
T KOG1912|consen  121 RDDSRDVLLAIHGSSTLVLWNTDTG----------EKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSE  190 (1062)
T ss_pred             cCcchheeEEecCCcEEEEEEccCC----------ceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCC
Confidence            533  35666667789999999976          334444444556677899998888777777778887776654332


Q ss_pred             CCCCCCCCCccceEEEecccC--c----------eecccCCCCCcc---ceEEEEEeCCCCcEEEEEeCCCeEEEEeCCC
Q 004468          183 CPPAGSSHQECRNILLDLRCG--A----------KRSLADPPKQTL---SLKSCDISSTRPHLLLVGGSDAFARLYDRRM  247 (751)
Q Consensus       183 ~~~~~~~~~~~~~~l~~~~~~--~----------~~~~~~~~~~~~---~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~  247 (751)
                      ...        ....+...+.  .          .......+....   ..-.++|+|.- +.++-...-..+.|+|+.-
T Consensus       191 p~~--------pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~-rn~lfi~~prellv~dle~  261 (1062)
T KOG1912|consen  191 PDV--------PGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHW-RNILFITFPRELLVFDLEY  261 (1062)
T ss_pred             CCC--------CceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhh-hceEEEEeccceEEEcchh
Confidence            100        0000000000  0          000000111111   12235678853 3333344567788999876


Q ss_pred             CCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCC--EEEEEeCCCcEEEEECCC
Q 004468          248 LPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGE--EVLLSYSGEHVYLMDVNH  310 (751)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~--~Ll~~s~d~~I~lwdl~~  310 (751)
                      ...+.....                 +++    .+.-+.+-|+++  .|++...||.+.+|--+.
T Consensus       262 ~~~l~vvpi-----------------er~----~akfv~vlP~~~rd~LfclH~nG~ltirvrk~  305 (1062)
T KOG1912|consen  262 ECCLAVVPI-----------------ERG----GAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE  305 (1062)
T ss_pred             hceeEEEEe-----------------ccC----CcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence            544332210                 011    244567777664  588888999999997554

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.01  E-value=0.00036  Score=83.95  Aligned_cols=219  Identities=17%  Similarity=0.176  Sum_probs=133.8

Q ss_pred             CCCcEEEEEECCCCCEEEEEeC---C---CcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEEC---CCcE
Q 004468           49 HQGCVNAISWNSKGSLLISGSD---D---THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG---DAEV  119 (751)
Q Consensus        49 H~~~V~~l~~s~dg~~LaSgs~---D---g~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~---Dg~V  119 (751)
                      +.+.-..|+|-.||+++|+.+-   .   ..|+||+-+ |.+..+- ..-.+--.+++|-|.  |++||+.-.   ...|
T Consensus       208 ~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stS-E~v~gLe~~l~WrPs--G~lIA~~q~~~~~~~V  283 (928)
T PF04762_consen  208 WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTS-EPVDGLEGALSWRPS--GNLIASSQRLPDRHDV  283 (928)
T ss_pred             cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEecc-ccCCCccCCccCCCC--CCEEEEEEEcCCCcEE
Confidence            5556668999999999998874   3   579999965 6544433 333444557899999  899998764   3456


Q ss_pred             EEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEe
Q 004468          120 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD  199 (751)
Q Consensus       120 ~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~  199 (751)
                      .+|.-+....     .  +-...+......|..++|++ ++.+|+..-.|. |.+|-....+                |.
T Consensus       284 vFfErNGLrh-----g--eF~l~~~~~~~~v~~l~Wn~-ds~iLAv~~~~~-vqLWt~~NYH----------------WY  338 (928)
T PF04762_consen  284 VFFERNGLRH-----G--EFTLRFDPEEEKVIELAWNS-DSEILAVWLEDR-VQLWTRSNYH----------------WY  338 (928)
T ss_pred             EEEecCCcEe-----e--eEecCCCCCCceeeEEEECC-CCCEEEEEecCC-ceEEEeeCCE----------------EE
Confidence            6665442110     0  10111224567899999999 678888877655 9999876543                21


Q ss_pred             cccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCC----CCC------------------ccccCC-
Q 004468          200 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM----LPP------------------LTSCQK-  256 (751)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~----~~~------------------~~~~~~-  256 (751)
                      ++..    +...  ....+..+.|+|.++..|.+...++.+..++...    ...                  ++.+.. 
T Consensus       339 LKqe----i~~~--~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a  412 (928)
T PF04762_consen  339 LKQE----IRFS--SSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRA  412 (928)
T ss_pred             EEEE----EEcc--CCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEeccccc
Confidence            1110    1111  1122334778887777777777766665544321    110                  011111 


Q ss_pred             CCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 004468          257 RMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (751)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~  311 (751)
                      ..+||.|...+.         -...|..++|++++..+++-..||.|.+|.....
T Consensus       413 ~VPPPMs~~~l~---------~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~  458 (928)
T PF04762_consen  413 VVPPPMSSYELE---------LPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLK  458 (928)
T ss_pred             CCCchHhceEEc---------CCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCC
Confidence            123333332221         1225999999999998999999999999986653

>PRK04043 tolB translocation protein TolB; Provisional

Probab=97.96  E-value=0.001  Score=73.49  Aligned_cols=201  Identities=10%  Similarity=0.083  Sum_probs=112.6

Q ss_pred             cEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCc-EEEEEEC---CCcEEEEECCCCCCCCCCCCCCCCceeecccCC
Q 004468           73 HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDE-LVVSGAG---DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTR  148 (751)
Q Consensus        73 ~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~-~l~sgs~---Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~  148 (751)
                      .|.+=|.. |.....+..+ . .+..-.|+|+  |+ .++..+.   +..|.++|+.++.           ...+....+
T Consensus       170 ~l~~~d~d-g~~~~~~~~~-~-~~~~p~wSpD--G~~~i~y~s~~~~~~~Iyv~dl~tg~-----------~~~lt~~~g  233 (419)
T PRK04043        170 NIVLADYT-LTYQKVIVKG-G-LNIFPKWANK--EQTAFYYTSYGERKPTLYKYNLYTGK-----------KEKIASSQG  233 (419)
T ss_pred             eEEEECCC-CCceeEEccC-C-CeEeEEECCC--CCcEEEEEEccCCCCEEEEEECCCCc-----------EEEEecCCC
Confidence            45554554 3333334233 3 7788999999  65 3554333   3568888887642           222223455


Q ss_pred             ceeEEEEecCCCCEEEEEeCCC--cEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCC
Q 004468          149 RVKKLAVEVGNPHVVWSASEDG--TLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISST  226 (751)
Q Consensus       149 ~V~~l~~sp~~~~~l~s~s~Dg--~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~  226 (751)
                      .+....|+|++..++++.+.++  .|.++|+.++...                       .+...+.   ......|+|+
T Consensus       234 ~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~-----------------------~LT~~~~---~d~~p~~SPD  287 (419)
T PRK04043        234 MLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLT-----------------------QITNYPG---IDVNGNFVED  287 (419)
T ss_pred             cEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEE-----------------------EcccCCC---ccCccEECCC
Confidence            5667789996656666665554  5666676655311                       1111111   1223479996


Q ss_pred             CCcEEEEEeCCC--eEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCC----
Q 004468          227 RPHLLLVGGSDA--FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG----  300 (751)
Q Consensus       227 ~~~~l~sgs~D~--~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d----  300 (751)
                      +..++++....+  .|.++|+..++...              .     ...+.     ....|||||++|+..+..    
T Consensus       288 G~~I~F~Sdr~g~~~Iy~~dl~~g~~~r--------------l-----t~~g~-----~~~~~SPDG~~Ia~~~~~~~~~  343 (419)
T PRK04043        288 DKRIVFVSDRLGYPNIFMKKLNSGSVEQ--------------V-----VFHGK-----NNSSVSTYKNYIVYSSRETNNE  343 (419)
T ss_pred             CCEEEEEECCCCCceEEEEECCCCCeEe--------------C-----ccCCC-----cCceECCCCCEEEEEEcCCCcc
Confidence            434444443333  56777776543211              0     00111     124899999998877653    


Q ss_pred             -----CcEEEEECCCCCcceeeeecCCCceeEEeCCCCCCcccCCC
Q 004468          301 -----EHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPP  341 (751)
Q Consensus       301 -----~~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~  341 (751)
                           ..|++.|+.++....+. . ........|+|+...+.+...
T Consensus       344 ~~~~~~~I~v~d~~~g~~~~LT-~-~~~~~~p~~SPDG~~I~f~~~  387 (419)
T PRK04043        344 FGKNTFNLYLISTNSDYIRRLT-A-NGVNQFPRFSSDGGSIMFIKY  387 (419)
T ss_pred             cCCCCcEEEEEECCCCCeEECC-C-CCCcCCeEECCCCCEEEEEEc
Confidence                 37899999886533222 2 234446889999888877643

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=97.95  E-value=0.00056  Score=73.42  Aligned_cols=73  Identities=12%  Similarity=0.236  Sum_probs=53.9

Q ss_pred             CcEEEEEECCCCCEEEEEeC-----------CCcEEEEeCCCCeEEEEecc--cCCcceEEEEEecCCCCcEEEEEECCC
Q 004468           51 GCVNAISWNSKGSLLISGSD-----------DTHINVWSYSSRKLLHSIET--GHSANVFCTKFVPETSDELVVSGAGDA  117 (751)
Q Consensus        51 ~~V~~l~~s~dg~~LaSgs~-----------Dg~I~IWd~~~~~~~~~l~~--~h~~~V~~v~fsp~s~~~~l~sgs~Dg  117 (751)
                      ..|.-+.|||..+||+|=|.           -..++|||+.+|.....+..  +....-.-.+||.+  ++++|--.. .
T Consensus       250 p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~D--dKy~Arm~~-~  326 (698)
T KOG2314|consen  250 PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHD--DKYFARMTG-N  326 (698)
T ss_pred             CCceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccC--CceeEEecc-c
Confidence            35788999999999999763           25799999999998888733  22222335689988  788886554 6


Q ss_pred             cEEEEECCC
Q 004468          118 EVRLFNLSR  126 (751)
Q Consensus       118 ~V~vwd~~~  126 (751)
                      +|.||+...
T Consensus       327 sisIyEtps  335 (698)
T KOG2314|consen  327 SISIYETPS  335 (698)
T ss_pred             eEEEEecCc
Confidence            788888764

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=97.89  E-value=0.0014  Score=69.84  Aligned_cols=249  Identities=13%  Similarity=0.143  Sum_probs=146.6

Q ss_pred             CcEEEEEECCCCCEEEEEeCCC---------------cEEEEeCCCCeEEEEecccCCcc--eE-EEEEecCCCCcEEEE
Q 004468           51 GCVNAISWNSKGSLLISGSDDT---------------HINVWSYSSRKLLHSIETGHSAN--VF-CTKFVPETSDELVVS  112 (751)
Q Consensus        51 ~~V~~l~~s~dg~~LaSgs~Dg---------------~I~IWd~~~~~~~~~l~~~h~~~--V~-~v~fsp~s~~~~l~s  112 (751)
                      ..|..+.|+|.+++|.|=+...               .+.|||+.+|..+..+ .+-...  .+ -++|+-+  +.++|=
T Consensus        72 ~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf-~~~~q~~~~Wp~~k~s~~--D~y~AR  148 (561)
T COG5354          72 PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSF-NGISQPYLGWPVLKFSID--DKYVAR  148 (561)
T ss_pred             CCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeec-cccCCcccccceeeeeec--chhhhh
Confidence            5688999999999999976533               4999999999999888 444444  55 7889887  666654


Q ss_pred             EECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecC-CCCEEE-----EEeCCCcEEEEecCCCCCCCCC
Q 004468          113 GAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVG-NPHVVW-----SASEDGTLRQHDFRQGSSCPPA  186 (751)
Q Consensus       113 gs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~-~~~~l~-----s~s~Dg~I~iwDlr~~~~~~~~  186 (751)
                      - ....++|+++... -.      ..+.+.++  ...|...+|+|. +...|+     ..+.++++++|.+-.+..+...
T Consensus       149 v-v~~sl~i~e~t~n-~~------~~p~~~lr--~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk  218 (561)
T COG5354         149 V-VGSSLYIHEITDN-IE------EHPFKNLR--PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTK  218 (561)
T ss_pred             h-ccCeEEEEecCCc-cc------cCchhhcc--ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeee
Confidence            3 3467999997321 11      02233332  355777888885 223333     2466788999988755433110


Q ss_pred             C-------------CCCCccceEEEecccCc--------------eecccCCCCCccceEEEEEeCCCCcEEEE--EeCC
Q 004468          187 G-------------SSHQECRNILLDLRCGA--------------KRSLADPPKQTLSLKSCDISSTRPHLLLV--GGSD  237 (751)
Q Consensus       187 ~-------------~~~~~~~~~l~~~~~~~--------------~~~~~~~~~~~~~v~~i~~sp~~~~~l~s--gs~D  237 (751)
                      .             .+..-|..+......+.              ...+........+|...+|+|. ++.+++  |-.+
T Consensus       219 ~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~~~~~pVhdf~W~p~-S~~F~vi~g~~p  297 (561)
T COG5354         219 NLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEKDLKDPVHDFTWEPL-SSRFAVISGYMP  297 (561)
T ss_pred             eeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceeccccccceeeeeccc-CCceeEEecccc
Confidence            0             00000111111110100              0011111134678999999996 444443  4578


Q ss_pred             CeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCC---CcEEEEECCCCCcc
Q 004468          238 AFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG---EHVYLMDVNHAGGR  314 (751)
Q Consensus       238 ~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d---~~I~lwdl~~~~~~  314 (751)
                      ..+.++|++..               +..+.|.     +    .=+.+.|||.++++++++-|   |.|-+||..+... 
T Consensus       298 a~~s~~~lr~N---------------l~~~~Pe-----~----~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~-  352 (561)
T COG5354         298 ASVSVFDLRGN---------------LRFYFPE-----Q----KRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFK-  352 (561)
T ss_pred             cceeecccccc---------------eEEecCC-----c----ccccccccCcccEEEEecCCccccceEEeccCCceE-
Confidence            89999999853               1111111     1    13457799999999987764   7899999887422 


Q ss_pred             eeeeecCCCceeEEeCCCCCCccc
Q 004468          315 AMRYTVGDASKIMSFTPTLNGLEL  338 (751)
Q Consensus       315 ~~~~~~~~~~~~~~~sp~~~~~~~  338 (751)
                      .+....+-......|+|++.-...
T Consensus       353 ~~~~~~~~n~s~~~wspd~qF~~~  376 (561)
T COG5354         353 VAGAFNGLNTSYCDWSPDGQFYDT  376 (561)
T ss_pred             EEEEeecCCceEeeccCCceEEEe
Confidence            221222333344558887654433

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.89  E-value=0.00048  Score=71.26  Aligned_cols=88  Identities=11%  Similarity=0.235  Sum_probs=76.3

Q ss_pred             cccccEEeccCCCcEEEEEECCCCC-EEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCC
Q 004468           39 RLSQERELEGHQGCVNAISWNSKGS-LLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA  117 (751)
Q Consensus        39 ~~~~~~~L~gH~~~V~~l~~s~dg~-~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg  117 (751)
                      .++....|.+|...|..|+|||..+ +|..++.+.+|+|.|+++..++..+ ..| ..+++++|.-+. ..+|+.|-..|
T Consensus       182 ~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy-~a~-~~~wSC~wDlde-~h~IYaGl~nG  258 (463)
T KOG1645|consen  182 DFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSY-IAY-NQIWSCCWDLDE-RHVIYAGLQNG  258 (463)
T ss_pred             CcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeehe-ecc-CCceeeeeccCC-cceeEEeccCc
Confidence            3444557888999999999999877 8999999999999999999888887 566 889999999986 68899999999


Q ss_pred             cEEEEECCCCCC
Q 004468          118 EVRLFNLSRFSG  129 (751)
Q Consensus       118 ~V~vwd~~~~~~  129 (751)
                      .|.|||++...+
T Consensus       259 ~VlvyD~R~~~~  270 (463)
T KOG1645|consen  259 MVLVYDMRQPEG  270 (463)
T ss_pred             eEEEEEccCCCc
Confidence            999999997543

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.86  E-value=0.0005  Score=77.03  Aligned_cols=192  Identities=14%  Similarity=0.184  Sum_probs=124.7

Q ss_pred             CCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCC
Q 004468           50 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSG  129 (751)
Q Consensus        50 ~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~  129 (751)
                      .+.+.|++++  ++.|+-|.-+|.|++.+.... . .+. ..|...        +..|.+++|||.||+|.|-.+-+.. 
T Consensus        39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~-~-~~~-~~~s~~--------~~~Gey~asCS~DGkv~I~sl~~~~-  104 (846)
T KOG2066|consen   39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQGN-P-KTN-FDHSSS--------ILEGEYVASCSDDGKVVIGSLFTDD-  104 (846)
T ss_pred             hhHHHHHHhh--cceeeeccccceEEEEecCCc-c-ccc-cccccc--------ccCCceEEEecCCCcEEEeeccCCc-
Confidence            3456666665  679999999999999997633 3 222 345443        3348999999999999999888642 


Q ss_pred             CCCCCCCCCCceeecccCCceeEEEEecC----CCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCce
Q 004468          130 RGLDDNAITPSALYQCHTRRVKKLAVEVG----NPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAK  205 (751)
Q Consensus       130 ~~~~~~~~~~~~~~~~h~~~V~~l~~sp~----~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~  205 (751)
                               ...++. -..++++|+++|+    ....|++||.-| +.++.-+--...          ..+         
T Consensus       105 ---------~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk----------~~v---------  154 (846)
T KOG2066|consen  105 ---------EITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNK----------DSV---------  154 (846)
T ss_pred             ---------cceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCc----------cce---------
Confidence                     223332 4568899999994    346788999988 766642211100          000         


Q ss_pred             ecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEE
Q 004468          206 RSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHV  285 (751)
Q Consensus       206 ~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v  285 (751)
                          ......++|.++.|.   +++||=++.+| |++||+.+.+.+..++.+...+               ....-...+
T Consensus       155 ----~l~~~eG~I~~i~W~---g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~---------------R~e~fpphl  211 (846)
T KOG2066|consen  155 ----VLSEGEGPIHSIKWR---GNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSV---------------RPELFPPHL  211 (846)
T ss_pred             ----eeecCccceEEEEec---CcEEEEecCCC-cEEEeccccceeeccCCCCCCC---------------CcccCCCce
Confidence                112245789999996   46888776665 8999999887665543322111               111123557


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEECCC
Q 004468          286 TFSPNGEEVLLSYSGEHVYLMDVNH  310 (751)
Q Consensus       286 ~fspdg~~Ll~~s~d~~I~lwdl~~  310 (751)
                      .|.++.+ |+.|.+| +|+|..+..
T Consensus       212 ~W~~~~~-LVIGW~d-~v~i~~I~~  234 (846)
T KOG2066|consen  212 HWQDEDR-LVIGWGD-SVKICSIKK  234 (846)
T ss_pred             EecCCCe-EEEecCC-eEEEEEEec
Confidence            7877654 6666655 788888873

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.85  E-value=1.2e-05  Score=87.34  Aligned_cols=227  Identities=21%  Similarity=0.280  Sum_probs=137.6

Q ss_pred             EeccCCCcEEEEEECC-CCCEEEEEe----CCCcEEEEeCCCC----eEEEEecccCCcceEEEEEecCCCCcEEEEEEC
Q 004468           45 ELEGHQGCVNAISWNS-KGSLLISGS----DDTHINVWSYSSR----KLLHSIETGHSANVFCTKFVPETSDELVVSGAG  115 (751)
Q Consensus        45 ~L~gH~~~V~~l~~s~-dg~~LaSgs----~Dg~I~IWd~~~~----~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~  115 (751)
                      ...+|....++++|++ |.+.||.|-    .|..+.|||+.++    +....+..+-.....+++|..+  .+++.+|..
T Consensus        97 ~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd--~klvlaGm~  174 (783)
T KOG1008|consen   97 VTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRD--TKLVLAGMT  174 (783)
T ss_pred             ecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccC--cchhhcccc
Confidence            3456777899999998 667888773    4777999998866    1222332234455668889866  588889999


Q ss_pred             CCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEe-cCCCCCCCCCCCCCCccc
Q 004468          116 DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHD-FRQGSSCPPAGSSHQECR  194 (751)
Q Consensus       116 Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwD-lr~~~~~~~~~~~~~~~~  194 (751)
                      ...|.++|++...           .....-.+..|..+...|-.+.++++-. ||.|.+|| .+.-+.....        
T Consensus       175 sr~~~ifdlRqs~-----------~~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~--------  234 (783)
T KOG1008|consen  175 SRSVHIFDLRQSL-----------DSVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQI--------  234 (783)
T ss_pred             cchhhhhhhhhhh-----------hhhhhhhhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHH--------
Confidence            9999999998421           2222224556777888887778885544 99999999 4443321000        


Q ss_pred             eEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCC-CeEEEEeCCCCCCccccCCCCCCCCccccccccccc
Q 004468          195 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD-AFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLS  273 (751)
Q Consensus       195 ~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D-~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (751)
                                  .+.........+..++|+|....++++...| ++|++||++....-.....    ...+.+..+....
T Consensus       235 ------------i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~v~t~~s~nn----~~~~~~~s~~~~q  298 (783)
T KOG1008|consen  235 ------------ILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICVVGTEGSANN----SVFVNYESKYPVQ  298 (783)
T ss_pred             ------------HhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccccCCcccccc----cceeeeccccccc
Confidence                        0111111233688999999877788877765 6899999975321111000    0011111111111


Q ss_pred             cCCccccceEEEEEcCCC--CEEEEEeCCCcEEEEECCC
Q 004468          274 EHGRSSLHLTHVTFSPNG--EEVLLSYSGEHVYLMDVNH  310 (751)
Q Consensus       274 ~~g~~~~~vt~v~fspdg--~~Ll~~s~d~~I~lwdl~~  310 (751)
                      ..+..+ .|.+.+|++-.  ...+++...-++..|++..
T Consensus       299 ~~~~~s-~I~~f~wH~~s~~er~il~~~nl~~~Df~V~e  336 (783)
T KOG1008|consen  299 PNSQCS-GIDFFTWHTASPTERQILGVINLQPKDFSVHE  336 (783)
T ss_pred             cccccc-ceeecCcCcCCccceeEEeeccCChhhccchh
Confidence            111112 48888888754  3455555566666666554

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.85  E-value=1.2e-05  Score=87.31  Aligned_cols=210  Identities=11%  Similarity=0.167  Sum_probs=133.4

Q ss_pred             CCcEEEEEECCCC--CEEEEEeCCCcEEEEeCCCCeE-EEEecccCCcceEEEEEecCCCCcEEEEE----ECCCcEEEE
Q 004468           50 QGCVNAISWNSKG--SLLISGSDDTHINVWSYSSRKL-LHSIETGHSANVFCTKFVPETSDELVVSG----AGDAEVRLF  122 (751)
Q Consensus        50 ~~~V~~l~~s~dg--~~LaSgs~Dg~I~IWd~~~~~~-~~~l~~~h~~~V~~v~fsp~s~~~~l~sg----s~Dg~V~vw  122 (751)
                      ...+.|++++.+.  .+|+.|..+|.|-+-.+....- -+.+..+|....++++|++-. -+.||.|    -.|..+.||
T Consensus        56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLD-tn~LAagldkhrnds~~~Iw  134 (783)
T KOG1008|consen   56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELD-TNHLAAGLDKHRNDSSLKIW  134 (783)
T ss_pred             CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceeccccccccccccccccc-HHHHHhhhhhhcccCCccce
Confidence            3467788887654  4899999999999988764322 234446888999999999872 3455555    236789999


Q ss_pred             ECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEeccc
Q 004468          123 NLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRC  202 (751)
Q Consensus       123 d~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~  202 (751)
                      |+.+.-....     +......+....+.+++|-. +.+++.+|...+.+.++|+|.......                 
T Consensus       135 di~s~ltvPk-----e~~~fs~~~l~gqns~cwlr-d~klvlaGm~sr~~~ifdlRqs~~~~~-----------------  191 (783)
T KOG1008|consen  135 DINSLLTVPK-----ESPLFSSSTLDGQNSVCWLR-DTKLVLAGMTSRSVHIFDLRQSLDSVS-----------------  191 (783)
T ss_pred             ecccccCCCc-----cccccccccccCcccccccc-Ccchhhcccccchhhhhhhhhhhhhhh-----------------
Confidence            9986422111     11111112344556889985 678888999999999999996431100                 


Q ss_pred             CceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEe-CCCCC-CccccCCCCCCCCccccccccccccCCcccc
Q 004468          203 GAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYD-RRMLP-PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSL  280 (751)
Q Consensus       203 ~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  280 (751)
                               .-.+..+..+.+.|-.+.|+++-. |+.|-+|| .++.+ ++..+....                ... ..
T Consensus       192 ---------svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~----------------N~~-~~  244 (783)
T KOG1008|consen  192 ---------SVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNE----------------NKK-PK  244 (783)
T ss_pred             ---------hhhhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCC----------------CCc-cc
Confidence                     002335666778886677877765 99999999 55433 111111000                000 11


Q ss_pred             ceEEEEEcCCCCE-EEEEeC-CCcEEEEECCC
Q 004468          281 HLTHVTFSPNGEE-VLLSYS-GEHVYLMDVNH  310 (751)
Q Consensus       281 ~vt~v~fspdg~~-Ll~~s~-d~~I~lwdl~~  310 (751)
                      .+..++|+|...- |++.+. .++|+++|+..
T Consensus       245 ~l~~~aycPtrtglla~l~RdS~tIrlydi~~  276 (783)
T KOG1008|consen  245 QLFALAYCPTRTGLLAVLSRDSITIRLYDICV  276 (783)
T ss_pred             ceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence            3788999996543 344443 68999999875

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=97.80  E-value=0.00026  Score=80.07  Aligned_cols=169  Identities=16%  Similarity=0.188  Sum_probs=119.9

Q ss_pred             ccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEEC--
Q 004468           38 RRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG--  115 (751)
Q Consensus        38 ~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~--  115 (751)
                      .+.+..+.+.--.+.|.-|..  ++++|.+|..-|+|.+-|..+.+.++++ ..|++.|.++...    |++|+||+.  
T Consensus       165 ~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~-~aHs~siSDfDv~----GNlLitCG~S~  237 (1118)
T KOG1275|consen  165 NTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTF-DAHSGSISDFDVQ----GNLLITCGYSM  237 (1118)
T ss_pred             ccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeee-eccccceeeeecc----CCeEEEeeccc
Confidence            344444444444445555554  5789999999999999999999999999 8999999987765    789999874  


Q ss_pred             -------CCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCC
Q 004468          116 -------DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGS  188 (751)
Q Consensus       116 -------Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~  188 (751)
                             |..|+|||++.-          +.+..+.-+.++ .-+.|.|.=...++.++..|.+.+-|..+-.....   
T Consensus       238 R~~~l~~D~FvkVYDLRmm----------ral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~---  303 (1118)
T KOG1275|consen  238 RRYNLAMDPFVKVYDLRMM----------RALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPA---  303 (1118)
T ss_pred             ccccccccchhhhhhhhhh----------hccCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCCCcc---
Confidence                   778999999863          223333334443 44678886667888899999999988443321100   


Q ss_pred             CCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCC
Q 004468          189 SHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRR  246 (751)
Q Consensus       189 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~  246 (751)
                           ....++             .....+..+++++. +..++.|..+|.|.+|--+
T Consensus       304 -----~~~~v~-------------p~~s~i~~fDiSsn-~~alafgd~~g~v~~wa~~  342 (1118)
T KOG1275|consen  304 -----GVKMVN-------------PNGSGISAFDISSN-GDALAFGDHEGHVNLWADR  342 (1118)
T ss_pred             -----ceeEEc-------------cCCCcceeEEecCC-CceEEEecccCcEeeecCC
Confidence                 001111             12234889999995 7999999999999999844

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.78  E-value=0.0014  Score=72.77  Aligned_cols=123  Identities=16%  Similarity=0.219  Sum_probs=88.2

Q ss_pred             CCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCC
Q 004468           49 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFS  128 (751)
Q Consensus        49 H~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~  128 (751)
                      |...|.--+++..+++|+.|+.-|.|.+|+-..++....-..+-.+.+..+..+++  +.++|.|+..|.|.|+-+....
T Consensus        32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~--e~lvAagt~~g~V~v~ql~~~~  109 (726)
T KOG3621|consen   32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSV--EYLVAAGTASGRVSVFQLNKEL  109 (726)
T ss_pred             CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecch--hHhhhhhcCCceEEeehhhccC
Confidence            45566666778889999999999999999977665544332333444555556666  6788889999999999887632


Q ss_pred             CCCCCCCCCCCcee-ecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCC
Q 004468          129 GRGLDDNAITPSAL-YQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQ  179 (751)
Q Consensus       129 ~~~~~~~~~~~~~~-~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~  179 (751)
                      ....     ..+.. -+.|...|++++|++ ++..|.+|..-|+|..-.+..
T Consensus       110 p~~~-----~~~t~~d~~~~~rVTal~Ws~-~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  110 PRDL-----DYVTPCDKSHKCRVTALEWSK-NGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             CCcc-----eeeccccccCCceEEEEEecc-cccEEeecCCCceEEEEEech
Confidence            1110     11111 123789999999999 678888999999998887776

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=97.77  E-value=0.0068  Score=62.00  Aligned_cols=189  Identities=14%  Similarity=0.167  Sum_probs=116.7

Q ss_pred             EEEEEEC-CCCCEEEEEeCCCcEEEEeCCCCeEEEEecc---c-CCcceEEEEEecCCCCcEEEEEECC--------CcE
Q 004468           53 VNAISWN-SKGSLLISGSDDTHINVWSYSSRKLLHSIET---G-HSANVFCTKFVPETSDELVVSGAGD--------AEV  119 (751)
Q Consensus        53 V~~l~~s-~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~---~-h~~~V~~v~fsp~s~~~~l~sgs~D--------g~V  119 (751)
                      .+.+.+. ++|.++++ ... .+.++|+.+++....+..   . .....+.+++.|+  |++.++....        +.|
T Consensus        42 ~~G~~~~~~~g~l~v~-~~~-~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~--G~ly~t~~~~~~~~~~~~g~v  117 (246)
T PF08450_consen   42 PNGMAFDRPDGRLYVA-DSG-GIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPD--GNLYVTDSGGGGASGIDPGSV  117 (246)
T ss_dssp             EEEEEEECTTSEEEEE-ETT-CEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TT--S-EEEEEECCBCTTCGGSEEE
T ss_pred             CceEEEEccCCEEEEE-EcC-ceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCC--CCEEEEecCCCccccccccce
Confidence            6777887 66655554 454 456669988865443321   1 4567889999999  7888877654        446


Q ss_pred             EEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEe
Q 004468          120 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD  199 (751)
Q Consensus       120 ~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~  199 (751)
                      ..++.. +          + +..+...-...+.|+|+|++..++++-+..+.|..|++......       .....++.+
T Consensus       118 ~~~~~~-~----------~-~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~-------~~~~~~~~~  178 (246)
T PF08450_consen  118 YRIDPD-G----------K-VTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGE-------LSNRRVFID  178 (246)
T ss_dssp             EEEETT-S----------E-EEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCC-------EEEEEEEEE
T ss_pred             EEECCC-C----------e-EEEEecCcccccceEECCcchheeecccccceeEEEeccccccc-------eeeeeeEEE
Confidence            666655 1          1 23333345567899999966556778888999999998754310       011122222


Q ss_pred             cccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccc
Q 004468          200 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS  279 (751)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  279 (751)
                      +..           .....-.+++.. ++++.++....+.|.++|.. ++.+..+..            |         .
T Consensus       179 ~~~-----------~~g~pDG~~vD~-~G~l~va~~~~~~I~~~~p~-G~~~~~i~~------------p---------~  224 (246)
T PF08450_consen  179 FPG-----------GPGYPDGLAVDS-DGNLWVADWGGGRIVVFDPD-GKLLREIEL------------P---------V  224 (246)
T ss_dssp             -SS-----------SSCEEEEEEEBT-TS-EEEEEETTTEEEEEETT-SCEEEEEE-------------S---------S
T ss_pred             cCC-----------CCcCCCcceEcC-CCCEEEEEcCCCEEEEECCC-ccEEEEEcC------------C---------C
Confidence            221           123467789998 47888888889999999987 543332210            0         0


Q ss_pred             cceEEEEE-cCCCCEEEEEe
Q 004468          280 LHLTHVTF-SPNGEEVLLSY  298 (751)
Q Consensus       280 ~~vt~v~f-spdg~~Ll~~s  298 (751)
                      ..+++++| -++.+.|++.+
T Consensus       225 ~~~t~~~fgg~~~~~L~vTt  244 (246)
T PF08450_consen  225 PRPTNCAFGGPDGKTLYVTT  244 (246)
T ss_dssp             SSEEEEEEESTTSSEEEEEE
T ss_pred             CCEEEEEEECCCCCEEEEEe
Confidence            14899999 47777777654

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=97.75  E-value=0.00083  Score=73.42  Aligned_cols=127  Identities=16%  Similarity=0.177  Sum_probs=88.5

Q ss_pred             cccccEEeccCCCcEEEEEECC-CCCEEEE----EeCCCcE----EEEeCCCCeE--EEEecccCCcceEEEEEecCCCC
Q 004468           39 RLSQERELEGHQGCVNAISWNS-KGSLLIS----GSDDTHI----NVWSYSSRKL--LHSIETGHSANVFCTKFVPETSD  107 (751)
Q Consensus        39 ~~~~~~~L~gH~~~V~~l~~s~-dg~~LaS----gs~Dg~I----~IWd~~~~~~--~~~l~~~h~~~V~~v~fsp~s~~  107 (751)
                      +++.+...+.-.++ .++.||. +...+.|    .+.+|.+    ++|++...+.  +..........|.|++++|+  .
T Consensus       195 klEvL~yirTE~dP-l~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~--E  271 (545)
T PF11768_consen  195 KLEVLSYIRTENDP-LDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPS--E  271 (545)
T ss_pred             cEEEEEEEEecCCc-EEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcc--c
Confidence            44444444433333 5677776 3444443    3445554    4566654432  22222367889999999999  7


Q ss_pred             cEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCC
Q 004468          108 ELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGS  181 (751)
Q Consensus       108 ~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~  181 (751)
                      ..|+.|+.||+|.+||...+            +..+....-.++.++|+| ++.+|++|+.-|.+.+||+.-..
T Consensus       272 ~kLvlGC~DgSiiLyD~~~~------------~t~~~ka~~~P~~iaWHp-~gai~~V~s~qGelQ~FD~ALsp  332 (545)
T PF11768_consen  272 DKLVLGCEDGSIILYDTTRG------------VTLLAKAEFIPTLIAWHP-DGAIFVVGSEQGELQCFDMALSP  332 (545)
T ss_pred             ceEEEEecCCeEEEEEcCCC------------eeeeeeecccceEEEEcC-CCcEEEEEcCCceEEEEEeecCc
Confidence            99999999999999999854            344445667789999999 77899999999999999987653

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=97.72  E-value=0.0091  Score=61.48  Aligned_cols=217  Identities=12%  Similarity=0.167  Sum_probs=131.7

Q ss_pred             EEEEECC-CCCEEEEEeCCCc-EEEEeCCCCeEEEEecccCCcceE--EEEEecCCCCcEEEEEEC-----CCcEEEEEC
Q 004468           54 NAISWNS-KGSLLISGSDDTH-INVWSYSSRKLLHSIETGHSANVF--CTKFVPETSDELVVSGAG-----DAEVRLFNL  124 (751)
Q Consensus        54 ~~l~~s~-dg~~LaSgs~Dg~-I~IWd~~~~~~~~~l~~~h~~~V~--~v~fsp~s~~~~l~sgs~-----Dg~V~vwd~  124 (751)
                      ..++.+| .+..+|.+-.-|+ ..+||..+++.+..+ ....+.-+  -..|+|+  |++|++.-.     .|.|-|||.
T Consensus         8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~-~a~~gRHFyGHg~fs~d--G~~LytTEnd~~~g~G~IgVyd~   84 (305)
T PF07433_consen    8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRL-WAPPGRHFYGHGVFSPD--GRLLYTTENDYETGRGVIGVYDA   84 (305)
T ss_pred             cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEE-cCCCCCEEecCEEEcCC--CCEEEEeccccCCCcEEEEEEEC
Confidence            4678888 5667777777665 678999999888776 22222221  2469999  899988644     578999999


Q ss_pred             CCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeC------CCcEEEEecCCCCCCCCCCCCCCccceEEE
Q 004468          125 SRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASE------DGTLRQHDFRQGSSCPPAGSSHQECRNILL  198 (751)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~------Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~  198 (751)
                      ...         +..+..+..|.-....+.+.|++..+++.-+.      .|..++ ++.+.           ...-++.
T Consensus        85 ~~~---------~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kL-Nl~tM-----------~psL~~l  143 (305)
T PF07433_consen   85 ARG---------YRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKL-NLDTM-----------QPSLVYL  143 (305)
T ss_pred             cCC---------cEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceec-Chhhc-----------CCceEEE
Confidence            832         25577788888777889999944344433211      112211 22222           2234566


Q ss_pred             ecccCceecccCC--CCCccceEEEEEeCCCCcEEEEEeC-CC-------eEEEEeCCCCCCccccCCCCCCCCcccccc
Q 004468          199 DLRCGAKRSLADP--PKQTLSLKSCDISSTRPHLLLVGGS-DA-------FARLYDRRMLPPLTSCQKRMSPPPCVNYFC  268 (751)
Q Consensus       199 ~~~~~~~~~~~~~--~~~~~~v~~i~~sp~~~~~l~sgs~-D~-------~IriwD~~~~~~~~~~~~~~~~~~~~~~~~  268 (751)
                      +..+|........  ..+...+..++++++ +. ++.|.. .+       .|-+++...  .+..+..   +....    
T Consensus       144 d~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~-G~-V~~a~Q~qg~~~~~~PLva~~~~g~--~~~~~~~---p~~~~----  212 (305)
T PF07433_consen  144 DARSGALLEQVELPPDLHQLSIRHLAVDGD-GT-VAFAMQYQGDPGDAPPLVALHRRGG--ALRLLPA---PEEQW----  212 (305)
T ss_pred             ecCCCceeeeeecCccccccceeeEEecCC-Cc-EEEEEecCCCCCccCCeEEEEcCCC--cceeccC---ChHHH----
Confidence            6777776555555  347788999999985 43 333332 11       122222211  1111000   00000    


Q ss_pred             ccccccCCccccceEEEEEcCCCCEEEEEeC-CCcEEEEECCCCC
Q 004468          269 PMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GEHVYLMDVNHAG  312 (751)
Q Consensus       269 ~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~-d~~I~lwdl~~~~  312 (751)
                            ..-.+ .+-+|+++++|.++++++- .+.+.+||..++.
T Consensus       213 ------~~l~~-Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~  250 (305)
T PF07433_consen  213 ------RRLNG-YIGSIAADRDGRLIAVTSPRGGRVAVWDAATGR  250 (305)
T ss_pred             ------HhhCC-ceEEEEEeCCCCEEEEECCCCCEEEEEECCCCC
Confidence                  01112 4899999999999888776 7899999999864

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=97.71  E-value=0.0032  Score=64.80  Aligned_cols=201  Identities=16%  Similarity=0.176  Sum_probs=121.7

Q ss_pred             CCcEEEEeCCC--CeEEEEecccCCcceEEEEEecCCCCcEEEEEEC---CCcEEEEECCCCCCCCCCCCCCCCceeecc
Q 004468           71 DTHINVWSYSS--RKLLHSIETGHSANVFCTKFVPETSDELVVSGAG---DAEVRLFNLSRFSGRGLDDNAITPSALYQC  145 (751)
Q Consensus        71 Dg~I~IWd~~~--~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~---Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~  145 (751)
                      ++-|.+|++.+  ++.-......+.++++-++|+|+  .+.|.++..   +|.|-.|.+...+|..      ..+.....
T Consensus        15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~--~~~LY~v~~~~~~ggvaay~iD~~~G~L------t~ln~~~~   86 (346)
T COG2706          15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPD--QRHLYVVNEPGEEGGVAAYRIDPDDGRL------TFLNRQTL   86 (346)
T ss_pred             CCceEEEEEeCcccccchhhhccccCCCceEEECCC--CCEEEEEEecCCcCcEEEEEEcCCCCeE------EEeecccc
Confidence            56799999863  33222222467899999999999  678887755   4778888887543322      11111122


Q ss_pred             cCCceeEEEEecCCCCEEEEEe-CCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEe
Q 004468          146 HTRRVKKLAVEVGNPHVVWSAS-EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDIS  224 (751)
Q Consensus       146 h~~~V~~l~~sp~~~~~l~s~s-~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~s  224 (751)
                      -..+.+.+++++ ++++++++. .-|.|.++-++..-.+..       ...++.....+..     .......+....++
T Consensus        87 ~g~~p~yvsvd~-~g~~vf~AnY~~g~v~v~p~~~dG~l~~-------~v~~~~h~g~~p~-----~rQ~~~h~H~a~~t  153 (346)
T COG2706          87 PGSPPCYVSVDE-DGRFVFVANYHSGSVSVYPLQADGSLQP-------VVQVVKHTGSGPH-----ERQESPHVHSANFT  153 (346)
T ss_pred             CCCCCeEEEECC-CCCEEEEEEccCceEEEEEcccCCcccc-------ceeeeecCCCCCC-----ccccCCccceeeeC
Confidence            233347899998 556666665 468999998876322110       0111111111100     00112237788999


Q ss_pred             CCCCcEEEEEe-CCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeC-CCc
Q 004468          225 STRPHLLLVGG-SDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GEH  302 (751)
Q Consensus       225 p~~~~~l~sgs-~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~-d~~  302 (751)
                      |+ +++|++.. .--.|.+|++..++...              ..+..+    ..+.....|.|+|+|++..+-.. +++
T Consensus       154 P~-~~~l~v~DLG~Dri~~y~~~dg~L~~--------------~~~~~v----~~G~GPRHi~FHpn~k~aY~v~EL~st  214 (346)
T COG2706         154 PD-GRYLVVPDLGTDRIFLYDLDDGKLTP--------------ADPAEV----KPGAGPRHIVFHPNGKYAYLVNELNST  214 (346)
T ss_pred             CC-CCEEEEeecCCceEEEEEcccCcccc--------------cccccc----CCCCCcceEEEcCCCcEEEEEeccCCE
Confidence            95 66777664 33579999998654221              111111    11224678999999999887776 999


Q ss_pred             EEEEECCCC
Q 004468          303 VYLMDVNHA  311 (751)
Q Consensus       303 I~lwdl~~~  311 (751)
                      |-+|..+..
T Consensus       215 V~v~~y~~~  223 (346)
T COG2706         215 VDVLEYNPA  223 (346)
T ss_pred             EEEEEEcCC
Confidence            999999883

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.66  E-value=0.0054  Score=69.52  Aligned_cols=210  Identities=12%  Similarity=0.130  Sum_probs=125.9

Q ss_pred             EECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcc-eEEEEEecCCCCcEEEEEECCC-----cEEEEECCCCCCC
Q 004468           57 SWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSAN-VFCTKFVPETSDELVVSGAGDA-----EVRLFNLSRFSGR  130 (751)
Q Consensus        57 ~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~-V~~v~fsp~s~~~~l~sgs~Dg-----~V~vwd~~~~~~~  130 (751)
                      +|++.+..+|-|+.||.|.+.+- ..+.++.+ +.+... |..+.....  -.+|++.+.|.     .|+||+++..++.
T Consensus        30 c~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~f-qa~~~siv~~L~~~~~--~~~L~sv~Ed~~~np~llkiw~lek~~~n  105 (933)
T KOG2114|consen   30 CCSSSTGSVVIGTADGRVVILNS-SFQLIRGF-QAYEQSIVQFLYILNK--QNFLFSVGEDEQGNPVLLKIWDLEKVDKN  105 (933)
T ss_pred             EEcCCCceEEEeeccccEEEecc-cceeeehh-eecchhhhhHhhcccC--ceEEEEEeecCCCCceEEEEecccccCCC
Confidence            47888999999999999988873 23444666 566666 444433333  35788777665     4899999865332


Q ss_pred             CCCCCCCCCc--eeecc-----cCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccC
Q 004468          131 GLDDNAITPS--ALYQC-----HTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCG  203 (751)
Q Consensus       131 ~~~~~~~~~~--~~~~~-----h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~  203 (751)
                      ..    ..++  +.+..     ...++.+++.+. +-..+|.|=.+|.|..+.-.--+.         ...         
T Consensus       106 ~s----P~c~~~~ri~~~~np~~~~p~s~l~Vs~-~l~~Iv~Gf~nG~V~~~~GDi~RD---------rgs---------  162 (933)
T KOG2114|consen  106 NS----PQCLYEHRIFTIKNPTNPSPASSLAVSE-DLKTIVCGFTNGLVICYKGDILRD---------RGS---------  162 (933)
T ss_pred             CC----cceeeeeeeeccCCCCCCCcceEEEEEc-cccEEEEEecCcEEEEEcCcchhc---------ccc---------
Confidence            10    1222  11122     245688889987 567888888999998874221110         000         


Q ss_pred             ceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceE
Q 004468          204 AKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLT  283 (751)
Q Consensus       204 ~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt  283 (751)
                         ..........+|+.+++..+ +..++-...-..|.+|.+....+..          ++          ..+.+..+.
T Consensus       163 ---r~~~~~~~~~pITgL~~~~d-~~s~lFv~Tt~~V~~y~l~gr~p~~----------~~----------ld~~G~~ln  218 (933)
T KOG2114|consen  163 ---RQDYSHRGKEPITGLALRSD-GKSVLFVATTEQVMLYSLSGRTPSL----------KV----------LDNNGISLN  218 (933)
T ss_pred             ---ceeeeccCCCCceeeEEecC-CceeEEEEecceeEEEEecCCCcce----------ee----------eccCCccce
Confidence               11112224578999999885 4442333334578899887322110          00          123344688


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECCCCCcceeeee
Q 004468          284 HVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYT  319 (751)
Q Consensus       284 ~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~~~~  319 (751)
                      |.+|++....+++++ +..|++|+... ......+.
T Consensus       219 Css~~~~t~qfIca~-~e~l~fY~sd~-~~~cfaf~  252 (933)
T KOG2114|consen  219 CSSFSDGTYQFICAG-SEFLYFYDSDG-RGPCFAFE  252 (933)
T ss_pred             eeecCCCCccEEEec-CceEEEEcCCC-cceeeeec
Confidence            888887666555544 45899999886 33444444

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=97.66  E-value=0.00023  Score=74.69  Aligned_cols=128  Identities=23%  Similarity=0.178  Sum_probs=101.1

Q ss_pred             chhHHHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCC---------CchhhhhHhHHHHHhhcccccchhhhHHHhhH
Q 004468          361 GKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIG---------PMLRHECLCIRAALLLKRKWKNDAQMAIRDCY  431 (751)
Q Consensus       361 ~~~~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~---------~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~  431 (751)
                      +...+.++.++..+..|+ |..|+..|..++......-.         .+++-.++.|-|+.++|-+=-   -.|+..|.
T Consensus       206 ~~A~~~ke~Gn~~fK~gk-~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~---~~Ai~~c~  281 (397)
T KOG0543|consen  206 EAADRKKERGNVLFKEGK-FKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEY---KEAIESCN  281 (397)
T ss_pred             HHHHHHHHhhhHHHhhch-HHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhH---HHHHHHHH
Confidence            344555667777777777 88999999988775543211         122234788999999987632   27899999


Q ss_pred             HHhcCCCCCcchHHHHHHHHHHhcchHHHHHHHHHhcccCCCChhhhHHHHHHHHHHHHHH
Q 004468          432 NARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHIAAAE  492 (751)
Q Consensus       432 ~a~~~~~~~~~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~  492 (751)
                      +++.++|++.||.||..+|++.++.+..|...+++++..-|++......+..+.+.+.+..
T Consensus       282 kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~  342 (397)
T KOG0543|consen  282 KVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYE  342 (397)
T ss_pred             HHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999877777777777665543

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=97.64  E-value=0.012  Score=71.25  Aligned_cols=263  Identities=16%  Similarity=0.204  Sum_probs=143.9

Q ss_pred             ccccccchhhhccccccEEeccCCCcEEEEEECCCCCEEEEEeC---CCcEEEEeCCCCeEEEEec---ccCCcceEEEE
Q 004468           27 NHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSD---DTHINVWSYSSRKLLHSIE---TGHSANVFCTK  100 (751)
Q Consensus        27 ~~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~---Dg~I~IWd~~~~~~~~~l~---~~h~~~V~~v~  100 (751)
                      .+.+++|+..   +.+..+-+.-.+-=.+|+|-|.|+++|+...   ...|.+|.- +|-.-..|.   ......|..+.
T Consensus       236 ~R~iRVy~Re---G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfEr-NGLrhgeF~l~~~~~~~~v~~l~  311 (928)
T PF04762_consen  236 RRVIRVYSRE---GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFER-NGLRHGEFTLRFDPEEEKVIELA  311 (928)
T ss_pred             eeEEEEECCC---ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEec-CCcEeeeEecCCCCCCceeeEEE
Confidence            3555565543   2222222222333347899999999999864   445677763 343333331   24567899999


Q ss_pred             EecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecc-cCCceeEEEEecCCCCEEEEEeCCCcEEEEecCC
Q 004468          101 FVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQC-HTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQ  179 (751)
Q Consensus       101 fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~-h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~  179 (751)
                      |+++  +..||..-.|. |.+|-...---        =..+.+.. ....+..+.|+|.++..|.....+|.+.++++.-
T Consensus       312 Wn~d--s~iLAv~~~~~-vqLWt~~NYHW--------YLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~  380 (928)
T PF04762_consen  312 WNSD--SEILAVWLEDR-VQLWTRSNYHW--------YLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAW  380 (928)
T ss_pred             ECCC--CCEEEEEecCC-ceEEEeeCCEE--------EEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEE
Confidence            9999  68888866555 99998874210        01222222 2334556999999988888888878887665543


Q ss_pred             CCCCCCCCCCCCccceEEEecccCc----eecccCCC------CCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCC
Q 004468          180 GSSCPPAGSSHQECRNILLDLRCGA----KRSLADPP------KQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP  249 (751)
Q Consensus       180 ~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~~------~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~  249 (751)
                      .................++|-..=.    ...+.-+|      .....|.+++|++. +..+++-..|+.|.+|......
T Consensus       381 ~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~-~~~~avl~~d~~l~~~~~~~~~  459 (928)
T PF04762_consen  381 DVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPS-NSRFAVLTSDGSLSIYEWDLKN  459 (928)
T ss_pred             EEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCC-CCeEEEEECCCCEEEEEecCCC
Confidence            2211111111122222222211100    00000011      13457899999995 5568999999999999865432


Q ss_pred             CccccCCCCCCCCcccccccc--ccccCCccccceEEEEEcCCCCEEEEEeCC---CcEEEEECCC
Q 004468          250 PLTSCQKRMSPPPCVNYFCPM--HLSEHGRSSLHLTHVTFSPNGEEVLLSYSG---EHVYLMDVNH  310 (751)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d---~~I~lwdl~~  310 (751)
                      ....     ..+.....+...  ...........+..++|..+...+++...+   ..+.++++..
T Consensus       460 ~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  520 (928)
T PF04762_consen  460 MWSV-----KPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDD  520 (928)
T ss_pred             cccc-----cCcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEecCcccceEEEEEecc
Confidence            1100     000000000000  000000112247889998888776666554   6888888854

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=97.63  E-value=0.0057  Score=62.96  Aligned_cols=210  Identities=17%  Similarity=0.200  Sum_probs=115.5

Q ss_pred             cEEeccCCCcEEEEEECCCCCEEEEE-----eCCCcEEEEeCC-CCeEEEEecccCCcceEEEEEecCCCCcEEEEEEC-
Q 004468           43 ERELEGHQGCVNAISWNSKGSLLISG-----SDDTHINVWSYS-SRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG-  115 (751)
Q Consensus        43 ~~~L~gH~~~V~~l~~s~dg~~LaSg-----s~Dg~I~IWd~~-~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~-  115 (751)
                      -+.|.||      -.||+||++|.+.     +..|.|-|||.. +.+.+..+ ..|.-.-..+.+.|+  ++.|+.+-. 
T Consensus        49 gRHFyGH------g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~-~s~GIGPHel~l~pD--G~tLvVANGG  119 (305)
T PF07433_consen   49 GRHFYGH------GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEF-PSHGIGPHELLLMPD--GETLVVANGG  119 (305)
T ss_pred             CCEEecC------EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEe-cCCCcChhhEEEcCC--CCEEEEEcCC
Confidence            3456666      4799999999986     446789999998 66777788 677777788999999  766666531 


Q ss_pred             ------CCcEEEEECCCCCC--CCCCCCCCCCcee--e--cccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCC
Q 004468          116 ------DAEVRLFNLSRFSG--RGLDDNAITPSAL--Y--QCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSC  183 (751)
Q Consensus       116 ------Dg~V~vwd~~~~~~--~~~~~~~~~~~~~--~--~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~  183 (751)
                            .|..++ |+.+.+.  ..++....+.+..  +  .-|...|..+++.+ ++..++..-       |.-......
T Consensus       120 I~Thpd~GR~kL-Nl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~-~G~V~~a~Q-------~qg~~~~~~  190 (305)
T PF07433_consen  120 IETHPDSGRAKL-NLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDG-DGTVAFAMQ-------YQGDPGDAP  190 (305)
T ss_pred             CccCcccCceec-ChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecC-CCcEEEEEe-------cCCCCCccC
Confidence                  122222 1111100  0001111122222  3  34777888888887 444443332       222211111


Q ss_pred             CCCCCCCCccceEEEecccCceecccCC-----CCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCC
Q 004468          184 PPAGSSHQECRNILLDLRCGAKRSLADP-----PKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRM  258 (751)
Q Consensus       184 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~-----~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~  258 (751)
                                 -.+.-...+........     ......+-+|++++++....+|+-..+.+-+||..++..+....   
T Consensus       191 -----------PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~---  256 (305)
T PF07433_consen  191 -----------PLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVP---  256 (305)
T ss_pred             -----------CeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccc---
Confidence                       01111111111111111     11345788999999644455666678899999999876543321   


Q ss_pred             CCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEE
Q 004468          259 SPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLM  306 (751)
Q Consensus       259 ~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lw  306 (751)
                                   +     .  -+..++-.+++  +++++..|.+...
T Consensus       257 -------------l-----~--D~cGva~~~~~--f~~ssG~G~~~~~  282 (305)
T PF07433_consen  257 -------------L-----P--DACGVAPTDDG--FLVSSGQGQLIRL  282 (305)
T ss_pred             -------------c-----C--ceeeeeecCCc--eEEeCCCccEEEc
Confidence                         1     1  26778888777  4555555554333

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.62  E-value=0.00011  Score=77.97  Aligned_cols=95  Identities=24%  Similarity=0.204  Sum_probs=81.5

Q ss_pred             CcchhHHHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhc-ccccchhhhHHHhhHHHhcCC
Q 004468          359 GLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLK-RKWKNDAQMAIRDCYNARRID  437 (751)
Q Consensus       359 ~~~~~~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~-r~w~~d~y~al~d~~~a~~~~  437 (751)
                      .......++..+|..+.+++ |..||..|+++|..+++.      +..|.|||+.|.. .+|.    -.+.||.+|+.++
T Consensus       111 ~~k~A~~lK~~GN~~f~~kk-Y~eAIkyY~~AI~l~p~e------piFYsNraAcY~~lgd~~----~Vied~TkALEl~  179 (606)
T KOG0547|consen  111 RLKYAAALKTKGNKFFRNKK-YDEAIKYYTQAIELCPDE------PIFYSNRAACYESLGDWE----KVIEDCTKALELN  179 (606)
T ss_pred             HHHHHHHHHhhhhhhhhccc-HHHHHHHHHHHHhcCCCC------chhhhhHHHHHHHHhhHH----HHHHHHHHHhhcC
Confidence            34556778888888888888 999999999999988775      4578999999984 4565    4588999999999


Q ss_pred             CCCcchHHHHHHHHHHhcchHHHHHHH
Q 004468          438 SSSFRAHLYMSEALEQLCKYKEALDFA  464 (751)
Q Consensus       438 ~~~~~a~~~~~~~l~~l~~~~~a~~~~  464 (751)
                      |.++||.+|.++|...||.+.||+.-+
T Consensus       180 P~Y~KAl~RRA~A~E~lg~~~eal~D~  206 (606)
T KOG0547|consen  180 PDYVKALLRRASAHEQLGKFDEALFDV  206 (606)
T ss_pred             cHHHHHHHHHHHHHHhhccHHHHHHhh
Confidence            999999999999999999999998544

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=97.62  E-value=0.00057  Score=73.86  Aligned_cols=115  Identities=19%  Similarity=0.198  Sum_probs=98.5

Q ss_pred             HHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcchH
Q 004468          365 MLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAH  444 (751)
Q Consensus       365 ~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~a~  444 (751)
                      .|...++..+..+. |..|+..|.++|...+..      ...|.+||.+++..   |+.-.|+.++..|+.++|.+..++
T Consensus         4 ~l~~~a~~a~~~~~-~~~Ai~~~~~Al~~~P~~------~~a~~~~a~~~~~~---g~~~eAl~~~~~Al~l~P~~~~a~   73 (356)
T PLN03088          4 DLEDKAKEAFVDDD-FALAVDLYTQAIDLDPNN------AELYADRAQANIKL---GNFTEAVADANKAIELDPSLAKAY   73 (356)
T ss_pred             HHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCcCCHHHH
Confidence            46777888888888 999999999999877654      45788999999876   557789999999999999999999


Q ss_pred             HHHHHHHHHhcchHHHHHHHHHhcccCCCChhhhHHHHHHHHHHH
Q 004468          445 LYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHIA  489 (751)
Q Consensus       445 ~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~  489 (751)
                      ++++.++..+|++.+|+.+++......|....+...+..+...+.
T Consensus        74 ~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~  118 (356)
T PLN03088         74 LRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKIA  118 (356)
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999988876666655555553

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.59  E-value=0.0068  Score=61.40  Aligned_cols=231  Identities=14%  Similarity=0.122  Sum_probs=119.5

Q ss_pred             cEEeccCCCcEEEEEECCCC-CEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEE
Q 004468           43 ERELEGHQGCVNAISWNSKG-SLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRL  121 (751)
Q Consensus        43 ~~~L~gH~~~V~~l~~s~dg-~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~v  121 (751)
                      .+.|.|-...|..|+|+|+. +++|+....+.|...+. +|+.+..+...--+-.-.|++.-+  +.++++--.++.+.+
T Consensus        14 ~~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~--~~~vl~~Er~~~L~~   90 (248)
T PF06977_consen   14 AKPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGN--GRYVLSEERDQRLYI   90 (248)
T ss_dssp             EEE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-ST--TEEEEEETTTTEEEE
T ss_pred             eeECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECC--CEEEEEEcCCCcEEE
Confidence            46777878889999999975 56777777888888886 578877774333466788888866  677776666899999


Q ss_pred             EECCCCCCCCCCCCCCCCc--eeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEe
Q 004468          122 FNLSRFSGRGLDDNAITPS--ALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD  199 (751)
Q Consensus       122 wd~~~~~~~~~~~~~~~~~--~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~  199 (751)
                      +++........ ......+  .....++..+-.++|.|.+..+| .+-+....++|.+..-..        .....+...
T Consensus        91 ~~~~~~~~~~~-~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~-v~kE~~P~~l~~~~~~~~--------~~~~~~~~~  160 (248)
T PF06977_consen   91 FTIDDDTTSLD-RADVQKISLGFPNKGNKGFEGLAYDPKTNRLF-VAKERKPKRLYEVNGFPG--------GFDLFVSDD  160 (248)
T ss_dssp             EEE----TT---EEEEEEEE---S---SS--EEEEEETTTTEEE-EEEESSSEEEEEEESTT---------SS--EEEE-
T ss_pred             EEEeccccccc-hhhceEEecccccCCCcceEEEEEcCCCCEEE-EEeCCCChhhEEEccccC--------ccceeeccc
Confidence            99954321110 0000000  01123556688999999555555 556666777777654210        000011110


Q ss_pred             cccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccc
Q 004468          200 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS  279 (751)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  279 (751)
                      ..      +.........+.+++++|..+++++.......|.++| ..++++..+......          +-  -.+.-
T Consensus       161 ~~------~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~----------~g--l~~~~  221 (248)
T PF06977_consen  161 QD------LDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGF----------HG--LSKDI  221 (248)
T ss_dssp             HH------HH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTG----------GG---SS--
T ss_pred             cc------cccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcc----------cC--ccccc
Confidence            00      0001112345788999998888999999999999999 455543322111000          00  00001


Q ss_pred             cceEEEEEcCCCCEEEEEeCCCcEEEE
Q 004468          280 LHLTHVTFSPNGEEVLLSYSGEHVYLM  306 (751)
Q Consensus       280 ~~vt~v~fspdg~~Ll~~s~d~~I~lw  306 (751)
                      ...-.|+|+++|+..+ .+.-+..|+|
T Consensus       222 ~QpEGIa~d~~G~LYI-vsEpNlfy~f  247 (248)
T PF06977_consen  222 PQPEGIAFDPDGNLYI-VSEPNLFYRF  247 (248)
T ss_dssp             -SEEEEEE-TT--EEE-EETTTEEEEE
T ss_pred             CCccEEEECCCCCEEE-EcCCceEEEe
Confidence            1367899999996544 4466677766

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=97.51  E-value=0.00023  Score=72.23  Aligned_cols=116  Identities=22%  Similarity=0.161  Sum_probs=93.9

Q ss_pred             cchhHHHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCC
Q 004468          360 LGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSS  439 (751)
Q Consensus       360 ~~~~~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~  439 (751)
                      .+..-++++.++..+.+|. |..||.-|+..|...+-+      +.++.|||++|++.+-.   -.|-.||..|+.||-.
T Consensus        94 L~~~SEiKE~GN~yFKQgK-y~EAIDCYs~~ia~~P~N------pV~~~NRA~AYlk~K~F---A~AE~DC~~AiaLd~~  163 (536)
T KOG4648|consen   94 LKKASEIKERGNTYFKQGK-YEEAIDCYSTAIAVYPHN------PVYHINRALAYLKQKSF---AQAEEDCEAAIALDKL  163 (536)
T ss_pred             HHhhHHHHHhhhhhhhccc-hhHHHHHhhhhhccCCCC------ccchhhHHHHHHHHHHH---HHHHHhHHHHHHhhHH
Confidence            3444557788888888888 888999999888876533      35788999999987753   3678999999999999


Q ss_pred             CcchHHHHHHHHHHhcchHHHHHHHHHhcccCCCChhhhHHHHHHH
Q 004468          440 SFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIK  485 (751)
Q Consensus       440 ~~~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~~~~~~~~~~~  485 (751)
                      +.||+.|.+.|-..||...||..-.+.+..+-|....+......+.
T Consensus       164 Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~  209 (536)
T KOG4648|consen  164 YVKAYSRRMQARESLGNNMEAKKDCETVLALEPKNIELKKSLARIN  209 (536)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHhc
Confidence            9999999999999999999999888888888887666554444443

>smart00320 WD40 WD40 repeats

Probab=97.51  E-value=0.0002  Score=48.41  Aligned_cols=38  Identities=34%  Similarity=0.688  Sum_probs=35.0

Q ss_pred             cccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEe
Q 004468           41 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWS   78 (751)
Q Consensus        41 ~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd   78 (751)
                      +++..+..|...|+++.|++++.++++++.|+.+++|+
T Consensus         3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            45678889999999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.51  E-value=0.0003  Score=71.42  Aligned_cols=96  Identities=21%  Similarity=0.246  Sum_probs=73.1

Q ss_pred             HHHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcch
Q 004468          364 RMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRA  443 (751)
Q Consensus       364 ~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~a  443 (751)
                      +-.++.+|..+.... |..|+..|++.|..-  +..+.+...||.||||+-.--+   .--.||.||..|+.++|.|.||
T Consensus        82 en~KeeGN~~fK~Kr-yk~A~~~Yt~Glk~k--c~D~dlnavLY~NRAAa~~~l~---NyRs~l~Dcs~al~~~P~h~Ka  155 (390)
T KOG0551|consen   82 ENYKEEGNEYFKEKR-YKDAVESYTEGLKKK--CADPDLNAVLYTNRAAAQLYLG---NYRSALNDCSAALKLKPTHLKA  155 (390)
T ss_pred             HHHHHHhHHHHHhhh-HHHHHHHHHHHHhhc--CCCccHHHHHHhhHHHHHHHHH---HHHHHHHHHHHHHhcCcchhhh
Confidence            334455555554444 778888999888744  3456777889999999975432   2335799999999999999999


Q ss_pred             HHHHHHHHHHhcchHHHHHHHH
Q 004468          444 HLYMSEALEQLCKYKEALDFAI  465 (751)
Q Consensus       444 ~~~~~~~l~~l~~~~~a~~~~~  465 (751)
                      .+|-++|+++|.++.+|..+-+
T Consensus       156 ~~R~Akc~~eLe~~~~a~nw~e  177 (390)
T KOG0551|consen  156 YIRGAKCLLELERFAEAVNWCE  177 (390)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHh
Confidence            9999999999999888774443

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=97.47  E-value=0.00048  Score=75.23  Aligned_cols=74  Identities=15%  Similarity=0.204  Sum_probs=63.8

Q ss_pred             cCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCC
Q 004468           48 GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSR  126 (751)
Q Consensus        48 gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~  126 (751)
                      .+...|.|++++|+.+.|+.|+.||.|++||...+....   ..+.-..+.++|+|+  |.+|++|+.-|.+.+||+..
T Consensus       257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~---~ka~~~P~~iaWHp~--gai~~V~s~qGelQ~FD~AL  330 (545)
T PF11768_consen  257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLL---AKAEFIPTLIAWHPD--GAIFVVGSEQGELQCFDMAL  330 (545)
T ss_pred             ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeee---eeecccceEEEEcCC--CcEEEEEcCCceEEEEEeec
Confidence            467899999999999999999999999999987663332   234566889999999  89999999999999999985

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.47  E-value=0.00053  Score=71.61  Aligned_cols=105  Identities=24%  Similarity=0.171  Sum_probs=88.8

Q ss_pred             cCcchhHHHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCC
Q 004468          358 TGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRID  437 (751)
Q Consensus       358 ~~~~~~~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~  437 (751)
                      ..++.++.-.+.++..+.+|. |..+-+.|.++|..-+.+..+.  ..||+|||+..++-+-   .-.|+.||..|+.||
T Consensus       244 ~~~k~le~~k~~gN~~fk~G~-y~~A~E~Yteal~idP~n~~~n--aklY~nra~v~~rLgr---l~eaisdc~~Al~iD  317 (486)
T KOG0550|consen  244 MMPKKLEVKKERGNDAFKNGN-YRKAYECYTEALNIDPSNKKTN--AKLYGNRALVNIRLGR---LREAISDCNEALKID  317 (486)
T ss_pred             hhHHHHHHHHhhhhhHhhccc-hhHHHHHHHHhhcCCccccchh--HHHHHHhHhhhcccCC---chhhhhhhhhhhhcC
Confidence            355666777778888888898 9999999999999887765543  4599999999987765   455999999999999


Q ss_pred             CCCcchHHHHHHHHHHhcchHHHHHHHHHhc
Q 004468          438 SSSFRAHLYMSEALEQLCKYKEALDFAIAAQ  468 (751)
Q Consensus       438 ~~~~~a~~~~~~~l~~l~~~~~a~~~~~~~~  468 (751)
                      +.+.||..+.++|.+.|+.+.+|...+++..
T Consensus       318 ~syikall~ra~c~l~le~~e~AV~d~~~a~  348 (486)
T KOG0550|consen  318 SSYIKALLRRANCHLALEKWEEAVEDYEKAM  348 (486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999997776554

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=97.46  E-value=0.00047  Score=73.75  Aligned_cols=122  Identities=19%  Similarity=0.169  Sum_probs=101.3

Q ss_pred             hHHHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcc
Q 004468          363 CRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFR  442 (751)
Q Consensus       363 ~~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~  442 (751)
                      ..+++..++..+.... |..+|..|+++|...+++      ...|.+||.+.++-.-   ...|+.|+.+|++++|...|
T Consensus         4 a~e~k~ean~~l~~~~-fd~avdlysKaI~ldpnc------a~~~anRa~a~lK~e~---~~~Al~Da~kaie~dP~~~K   73 (476)
T KOG0376|consen    4 AEELKNEANEALKDKV-FDVAVDLYSKAIELDPNC------AIYFANRALAHLKVES---FGGALHDALKAIELDPTYIK   73 (476)
T ss_pred             hhhhhhHHhhhcccch-HHHHHHHHHHHHhcCCcc------eeeechhhhhheeech---hhhHHHHHHhhhhcCchhhh
Confidence            3455667777777766 899999999999988876      4578999999998654   56799999999999999999


Q ss_pred             hHHHHHHHHHHhcchHHHHHHHHHhcccCCCChhhhHHHHHHHHHHHHHHhh
Q 004468          443 AHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHIAAAETE  494 (751)
Q Consensus       443 a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~  494 (751)
                      +++|.+.+-..++++++|...++......|....+.+.+......+....++
T Consensus        74 ~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~~~fe  125 (476)
T KOG0376|consen   74 AYVRRGTAVMALGEFKKALLDLEKVKKLAPNDPDATRKIDECNKIVSEEKFE  125 (476)
T ss_pred             eeeeccHHHHhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHHhhh
Confidence            9999999999999999999999999999998877666666555555444443

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=97.36  E-value=0.00086  Score=72.40  Aligned_cols=112  Identities=20%  Similarity=0.133  Sum_probs=95.1

Q ss_pred             HHHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcch
Q 004468          364 RMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRA  443 (751)
Q Consensus       364 ~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~a  443 (751)
                      ..+++.++..++.|. |..+|..|.++|..-+.      .|.+|+||.+++.+-+-   .-.|+.|..+++.+.|.=+|+
T Consensus         3 ~e~k~kgnaa~s~~d-~~~ai~~~t~ai~l~p~------nhvlySnrsaa~a~~~~---~~~al~da~k~~~l~p~w~kg   72 (539)
T KOG0548|consen    3 VELKEKGNAAFSSGD-FETAIRLFTEAIMLSPT------NHVLYSNRSAAYASLGS---YEKALKDATKTRRLNPDWAKG   72 (539)
T ss_pred             hHHHHHHHhhccccc-HHHHHHHHHHHHccCCC------ccchhcchHHHHHHHhh---HHHHHHHHHHHHhcCCchhhH
Confidence            456778899999998 99999999999985533      48999999999998765   456899999999999999999


Q ss_pred             HHHHHHHHHHhcchHHHHHHHHHhcccCCCChhhhHHHHHHH
Q 004468          444 HLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIK  485 (751)
Q Consensus       444 ~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~~~~~~~~~~~  485 (751)
                      ++|+.-+++-||++.+|......-....|+...+-.++....
T Consensus        73 y~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~  114 (539)
T KOG0548|consen   73 YSRKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAY  114 (539)
T ss_pred             HHHhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhh
Confidence            999999999999999999888888888888766655544433

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=97.33  E-value=0.016  Score=58.61  Aligned_cols=193  Identities=17%  Similarity=0.160  Sum_probs=108.9

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCc
Q 004468           61 KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPS  140 (751)
Q Consensus        61 dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~  140 (751)
                      ++.++.+++.++.|..||..+|+.+..+..  .+.+...... .  +..++.+..|+.|..+|..++          +.+
T Consensus        35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~--~~~~~~~~~~-~--~~~v~v~~~~~~l~~~d~~tG----------~~~   99 (238)
T PF13360_consen   35 DGGRVYVASGDGNLYALDAKTGKVLWRFDL--PGPISGAPVV-D--GGRVYVGTSDGSLYALDAKTG----------KVL   99 (238)
T ss_dssp             ETTEEEEEETTSEEEEEETTTSEEEEEEEC--SSCGGSGEEE-E--TTEEEEEETTSEEEEEETTTS----------CEE
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEeec--cccccceeee-c--ccccccccceeeeEecccCCc----------cee
Confidence            566777778999999999999999887732  2222221222 2  456677778889999998865          223


Q ss_pred             eee-cccC---CceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCcc
Q 004468          141 ALY-QCHT---RRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTL  216 (751)
Q Consensus       141 ~~~-~~h~---~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  216 (751)
                      ... ....   .......... .+..++.+..++.|..+|+++++.              +|....+........ ....
T Consensus       100 W~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~l~~~d~~tG~~--------------~w~~~~~~~~~~~~~-~~~~  163 (238)
T PF13360_consen  100 WSIYLTSSPPAGVRSSSSPAV-DGDRLYVGTSSGKLVALDPKTGKL--------------LWKYPVGEPRGSSPI-SSFS  163 (238)
T ss_dssp             EEEEE-SSCTCSTB--SEEEE-ETTEEEEEETCSEEEEEETTTTEE--------------EEEEESSTT-SS--E-EEET
T ss_pred             eeeccccccccccccccCceE-ecCEEEEEeccCcEEEEecCCCcE--------------EEEeecCCCCCCcce-eeec
Confidence            331 2111   1111222222 246677888899999999999863              333221110000000 0000


Q ss_pred             ce-EEEEEeCCCCcEEEEEeCCCe-EEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEE
Q 004468          217 SL-KSCDISSTRPHLLLVGGSDAF-ARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEV  294 (751)
Q Consensus       217 ~v-~~i~~sp~~~~~l~sgs~D~~-IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~L  294 (751)
                      .+ ..+.+.  ++ .+.+++.++. +.+ |+.+++.+...              +  .      . .+.. ....++..|
T Consensus       164 ~~~~~~~~~--~~-~v~~~~~~g~~~~~-d~~tg~~~w~~--------------~--~------~-~~~~-~~~~~~~~l  215 (238)
T PF13360_consen  164 DINGSPVIS--DG-RVYVSSGDGRVVAV-DLATGEKLWSK--------------P--I------S-GIYS-LPSVDGGTL  215 (238)
T ss_dssp             TEEEEEECC--TT-EEEEECCTSSEEEE-ETTTTEEEEEE--------------C--S------S--ECE-CEECCCTEE
T ss_pred             ccccceEEE--CC-EEEEEcCCCeEEEE-ECCCCCEEEEe--------------c--C------C-CccC-CceeeCCEE
Confidence            11 222233  23 6666776774 555 98876522110              0  0      0 1111 245778888


Q ss_pred             EEEeCCCcEEEEECCCCC
Q 004468          295 LLSYSGEHVYLMDVNHAG  312 (751)
Q Consensus       295 l~~s~d~~I~lwdl~~~~  312 (751)
                      ++.+.++.|+.||+.+++
T Consensus       216 ~~~~~~~~l~~~d~~tG~  233 (238)
T PF13360_consen  216 YVTSSDGRLYALDLKTGK  233 (238)
T ss_dssp             EEEETTTEEEEEETTTTE
T ss_pred             EEEeCCCEEEEEECCCCC
Confidence            888899999999999964

...

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=97.30  E-value=0.037  Score=60.51  Aligned_cols=104  Identities=17%  Similarity=0.231  Sum_probs=63.0

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCc
Q 004468           61 KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPS  140 (751)
Q Consensus        61 dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~  140 (751)
                      ++..++.++.|+.|..+|..+|+.+......  +.+.+.-...   +..++.+..++.|..||..++.          .+
T Consensus       104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~--~~~~~~p~v~---~~~v~v~~~~g~l~a~d~~tG~----------~~  168 (377)
T TIGR03300       104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLS--SEVLSPPLVA---NGLVVVRTNDGRLTALDAATGE----------RL  168 (377)
T ss_pred             cCCEEEEEcCCCEEEEEECCCCcEeeeeccC--ceeecCCEEE---CCEEEEECCCCeEEEEEcCCCc----------ee
Confidence            4567778888999999999899888766322  2232211111   3567777789999999998652          12


Q ss_pred             eeecccCCce-----eEEEEecCCCCEEEEEeCCCcEEEEecCCCCC
Q 004468          141 ALYQCHTRRV-----KKLAVEVGNPHVVWSASEDGTLRQHDFRQGSS  182 (751)
Q Consensus       141 ~~~~~h~~~V-----~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~  182 (751)
                      ..+......+     .+....  + ..++.+..+|.+..+|+++++.
T Consensus       169 W~~~~~~~~~~~~~~~sp~~~--~-~~v~~~~~~g~v~ald~~tG~~  212 (377)
T TIGR03300       169 WTYSRVTPALTLRGSASPVIA--D-GGVLVGFAGGKLVALDLQTGQP  212 (377)
T ss_pred             eEEccCCCceeecCCCCCEEE--C-CEEEEECCCCEEEEEEccCCCE
Confidence            2222111110     011111  2 3566777888898888887764

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.30  E-value=0.0021  Score=66.68  Aligned_cols=97  Identities=14%  Similarity=0.197  Sum_probs=76.9

Q ss_pred             EEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEE
Q 004468           74 INVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKL  153 (751)
Q Consensus        74 I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l  153 (751)
                      |++.+..+.+... +..+|...|.+++|+|.. .-++..++.+.+|+|.|+++.          ..+..+..| ..++++
T Consensus       175 v~~l~~~~fkssq-~lp~~g~~IrdlafSp~~-~GLl~~asl~nkiki~dlet~----------~~vssy~a~-~~~wSC  241 (463)
T KOG1645|consen  175 VQKLESHDFKSSQ-ILPGEGSFIRDLAFSPFN-EGLLGLASLGNKIKIMDLETS----------CVVSSYIAY-NQIWSC  241 (463)
T ss_pred             eEEeccCCcchhh-cccccchhhhhhccCccc-cceeeeeccCceEEEEecccc----------eeeeheecc-CCceee
Confidence            4444444444444 336888999999999994 337889999999999999974          335666666 789999


Q ss_pred             EEecCCCCEEEEEeCCCcEEEEecCCCCCC
Q 004468          154 AVEVGNPHVVWSASEDGTLRQHDFRQGSSC  183 (751)
Q Consensus       154 ~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~  183 (751)
                      +|.-++.+++..|-..|.|.+||+|..+..
T Consensus       242 ~wDlde~h~IYaGl~nG~VlvyD~R~~~~~  271 (463)
T KOG1645|consen  242 CWDLDERHVIYAGLQNGMVLVYDMRQPEGP  271 (463)
T ss_pred             eeccCCcceeEEeccCceEEEEEccCCCch
Confidence            999988889999999999999999987643

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=97.29  E-value=0.0003  Score=79.04  Aligned_cols=163  Identities=22%  Similarity=0.244  Sum_probs=110.5

Q ss_pred             EEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEE
Q 004468           84 LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVV  163 (751)
Q Consensus        84 ~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l  163 (751)
                      ...+| ..|+..-+|++|+-.  .+.|+.|+..|.|+++++.++.          -.....||...|+-+.-+-++..+|
T Consensus      1093 ~w~~f-rd~~~~fTc~afs~~--~~hL~vG~~~Geik~~nv~sG~----------~e~s~ncH~SavT~vePs~dgs~~L 1159 (1516)
T KOG1832|consen 1093 SWRSF-RDETALFTCIAFSGG--TNHLAVGSHAGEIKIFNVSSGS----------MEESVNCHQSAVTLVEPSVDGSTQL 1159 (1516)
T ss_pred             cchhh-hccccceeeEEeecC--CceEEeeeccceEEEEEccCcc----------ccccccccccccccccccCCcceee
Confidence            34445 678899999999998  6899999999999999999763          2556789999999999888665556


Q ss_pred             EEEeCCC-cEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCC-ccceEEEEEeCCCCcEEEEEeCCCeEE
Q 004468          164 WSASEDG-TLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQ-TLSLKSCDISSTRPHLLLVGGSDAFAR  241 (751)
Q Consensus       164 ~s~s~Dg-~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~v~~i~~sp~~~~~l~sgs~D~~Ir  241 (751)
                      .+++... -..+|++..--..                             .| -..-.++.|+.. ...-+.|..-..+.
T Consensus      1160 tsss~S~PlsaLW~~~s~~~~-----------------------------~Hsf~ed~~vkFsn~-~q~r~~gt~~d~a~ 1209 (1516)
T KOG1832|consen 1160 TSSSSSSPLSALWDASSTGGP-----------------------------RHSFDEDKAVKFSNS-LQFRALGTEADDAL 1209 (1516)
T ss_pred             eeccccCchHHHhccccccCc-----------------------------cccccccceeehhhh-HHHHHhcccccceE
Confidence            5555544 4668887652211                             01 123456677653 33344455556788


Q ss_pred             EEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 004468          242 LYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (751)
Q Consensus       242 iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~  311 (751)
                      |||+.+..++.+            ++.+...     .++.-+++.|+|+.+.++--   |  .|||++..
T Consensus      1210 ~YDvqT~~~l~t------------ylt~~~~-----~~y~~n~a~FsP~D~LIlnd---G--vLWDvR~~ 1257 (1516)
T KOG1832|consen 1210 LYDVQTCSPLQT------------YLTDTVT-----SSYSNNLAHFSPCDTLILND---G--VLWDVRIP 1257 (1516)
T ss_pred             EEecccCcHHHH------------hcCcchh-----hhhhccccccCCCcceEeeC---c--eeeeeccH
Confidence            999998775433            2222111     11224678999999877733   3  58999885

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.27  E-value=0.00047  Score=66.94  Aligned_cols=97  Identities=21%  Similarity=0.179  Sum_probs=82.1

Q ss_pred             chhHHHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCC
Q 004468          361 GKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSS  440 (751)
Q Consensus       361 ~~~~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~  440 (751)
                      ....++.+.++..+.+.. |-.||..|..+|...+..      ..-|.|||..+++.+-   .-.+..||.+|++++|+.
T Consensus         8 ~~a~qlkE~gnk~f~~k~-y~~ai~~y~raI~~nP~~------~~Y~tnralchlk~~~---~~~v~~dcrralql~~N~   77 (284)
T KOG4642|consen    8 ESAEQLKEQGNKCFIPKR-YDDAIDCYSRAICINPTV------ASYYTNRALCHLKLKH---WEPVEEDCRRALQLDPNL   77 (284)
T ss_pred             hHHHHHHhccccccchhh-hchHHHHHHHHHhcCCCc------chhhhhHHHHHHHhhh---hhhhhhhHHHHHhcChHH
Confidence            345677778888877777 889999999999877554      3467899999998662   236789999999999999


Q ss_pred             cchHHHHHHHHHHhcchHHHHHHHHHh
Q 004468          441 FRAHLYMSEALEQLCKYKEALDFAIAA  467 (751)
Q Consensus       441 ~~a~~~~~~~l~~l~~~~~a~~~~~~~  467 (751)
                      +|+||.+..++++...+.+|+.++...
T Consensus        78 vk~h~flg~~~l~s~~~~eaI~~Lqra  104 (284)
T KOG4642|consen   78 VKAHYFLGQWLLQSKGYDEAIKVLQRA  104 (284)
T ss_pred             HHHHHHHHHHHHhhccccHHHHHHHHH
Confidence            999999999999999999999988776

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=97.23  E-value=0.027  Score=61.63  Aligned_cols=104  Identities=16%  Similarity=0.133  Sum_probs=65.4

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCc
Q 004468           61 KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPS  140 (751)
Q Consensus        61 dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~  140 (751)
                      .+..+..++.++.|.-+|..+|+.+..+..+ ........  .+  +..++.++.++.+..+|..++.          .+
T Consensus        64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~-~~~~~~p~--v~--~~~v~v~~~~g~l~ald~~tG~----------~~  128 (377)
T TIGR03300        64 AGGKVYAADADGTVVALDAETGKRLWRVDLD-ERLSGGVG--AD--GGLVFVGTEKGEVIALDAEDGK----------EL  128 (377)
T ss_pred             ECCEEEEECCCCeEEEEEccCCcEeeeecCC-CCcccceE--Ec--CCEEEEEcCCCEEEEEECCCCc----------Ee
Confidence            3668888889999999999999988776322 21111121  12  5678888899999999998652          12


Q ss_pred             eeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCC
Q 004468          141 ALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSS  182 (751)
Q Consensus       141 ~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~  182 (751)
                      ..... ...+.+.-... + ..++.++.+|.|..||.++++.
T Consensus       129 W~~~~-~~~~~~~p~v~-~-~~v~v~~~~g~l~a~d~~tG~~  167 (377)
T TIGR03300       129 WRAKL-SSEVLSPPLVA-N-GLVVVRTNDGRLTALDAATGER  167 (377)
T ss_pred             eeecc-CceeecCCEEE-C-CEEEEECCCCeEEEEEcCCCce
Confidence            22221 11221111111 3 3455677889999999988764

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=97.16  E-value=0.077  Score=62.87  Aligned_cols=210  Identities=10%  Similarity=0.100  Sum_probs=128.3

Q ss_pred             CCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECC--CC
Q 004468           50 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLS--RF  127 (751)
Q Consensus        50 ~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~--~~  127 (751)
                      .+.|.++.|..++.-++.+..+|.|.+-|..+..... . ..-...|.+++|+|+  ++.++-...++++.+-+-.  --
T Consensus        68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~ei-v-g~vd~GI~aaswS~D--ee~l~liT~~~tll~mT~~f~~i  143 (1265)
T KOG1920|consen   68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEI-V-GNVDNGISAASWSPD--EELLALITGRQTLLFMTKDFEPI  143 (1265)
T ss_pred             CcceEEEEEecccceEEEEecCCcEEEEcccccceee-e-eeccCceEEEeecCC--CcEEEEEeCCcEEEEEeccccch
Confidence            3689999999999999999999999999987654322 1 234678999999999  7888888887777654321  00


Q ss_pred             CCCCC-----------CCCCCCCceeec----------------------ccCCceeEEEEecCCCCEEEEE-----eCC
Q 004468          128 SGRGL-----------DDNAITPSALYQ----------------------CHTRRVKKLAVEVGNPHVVWSA-----SED  169 (751)
Q Consensus       128 ~~~~~-----------~~~~~~~~~~~~----------------------~h~~~V~~l~~sp~~~~~l~s~-----s~D  169 (751)
                      ..+.+           ..+..+.-..|.                      -|.. =++|.|-- ++.+|++.     ..-
T Consensus       144 ~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~-~~~IsWRg-Dg~~fAVs~~~~~~~~  221 (1265)
T KOG1920|consen  144 AEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDH-KTSISWRG-DGEYFAVSFVESETGT  221 (1265)
T ss_pred             hccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccC-CceEEEcc-CCcEEEEEEEeccCCc
Confidence            00000           000001001111                      1111 23588876 67777762     223


Q ss_pred             CcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEE---eCCCeEEEEeCC
Q 004468          170 GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVG---GSDAFARLYDRR  246 (751)
Q Consensus       170 g~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sg---s~D~~IriwD~~  246 (751)
                      +.|++||-. +..-.                       .  .......-.+++|-|. |.++++-   .+|+.|.+|..+
T Consensus       222 RkirV~drE-g~Lns-----------------------~--se~~~~l~~~LsWkPs-gs~iA~iq~~~sd~~IvffErN  274 (1265)
T KOG1920|consen  222 RKIRVYDRE-GALNS-----------------------T--SEPVEGLQHSLSWKPS-GSLIAAIQCKTSDSDIVFFERN  274 (1265)
T ss_pred             eeEEEeccc-chhhc-----------------------c--cCcccccccceeecCC-CCeEeeeeecCCCCcEEEEecC
Confidence            799999976 32100                       0  0001223457889995 6666664   356789999876


Q ss_pred             CCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEE---EeCCCcEEEEECCC
Q 004468          247 MLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLL---SYSGEHVYLMDVNH  310 (751)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~---~s~d~~I~lwdl~~  310 (751)
                      -+.. .++..+         + |.       ....|..++|+.++..|++   ......|++|-+.+
T Consensus       275 GL~h-g~f~l~---------~-p~-------de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~N  323 (1265)
T KOG1920|consen  275 GLRH-GEFVLP---------F-PL-------DEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGN  323 (1265)
T ss_pred             Cccc-cccccC---------C-cc-------cccchheeeecCCCCceeeeecccccceEEEEEecC
Confidence            5431 111000         0 00       0113889999999999988   44456699998877

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.95  E-value=0.041  Score=62.76  Aligned_cols=170  Identities=19%  Similarity=0.260  Sum_probs=107.6

Q ss_pred             ceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCc-eeEEEEecCCCCEEEEEeCCCc--
Q 004468           95 NVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRR-VKKLAVEVGNPHVVWSASEDGT--  171 (751)
Q Consensus        95 ~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~-V~~l~~sp~~~~~l~s~s~Dg~--  171 (751)
                      .|.|  |++.  +..+|.|+.||.|.+.+-.-           +.++.++.+... |..+- .-....+|++.++|+.  
T Consensus        27 ~isc--~~s~--~~~vvigt~~G~V~~Ln~s~-----------~~~~~fqa~~~siv~~L~-~~~~~~~L~sv~Ed~~~n   90 (933)
T KOG2114|consen   27 AISC--CSSS--TGSVVIGTADGRVVILNSSF-----------QLIRGFQAYEQSIVQFLY-ILNKQNFLFSVGEDEQGN   90 (933)
T ss_pred             ceeE--EcCC--CceEEEeeccccEEEecccc-----------eeeehheecchhhhhHhh-cccCceEEEEEeecCCCC
Confidence            4444  4555  67899999999988887653           335777777777 55553 3324468888888765  


Q ss_pred             ---EEEEecCCCCCCCCCCCCCCccce--EEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCC
Q 004468          172 ---LRQHDFRQGSSCPPAGSSHQECRN--ILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRR  246 (751)
Q Consensus       172 ---I~iwDlr~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~  246 (751)
                         |++||+.....-     ....|..  .++.         ...|....++.+++++.+ -..+|+|-.+|.|..+.-.
T Consensus        91 p~llkiw~lek~~~n-----~sP~c~~~~ri~~---------~~np~~~~p~s~l~Vs~~-l~~Iv~Gf~nG~V~~~~GD  155 (933)
T KOG2114|consen   91 PVLLKIWDLEKVDKN-----NSPQCLYEHRIFT---------IKNPTNPSPASSLAVSED-LKTIVCGFTNGLVICYKGD  155 (933)
T ss_pred             ceEEEEecccccCCC-----CCcceeeeeeeec---------cCCCCCCCcceEEEEEcc-ccEEEEEecCcEEEEEcCc
Confidence               899999875421     0011210  1111         012235678889999985 6899999999999998543


Q ss_pred             CCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCC
Q 004468          247 MLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG  312 (751)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~  312 (751)
                      -.....+           +.-    ..  .....+||.++|..+++-++-...-..|.+|.+.+..
T Consensus       156 i~RDrgs-----------r~~----~~--~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~  204 (933)
T KOG2114|consen  156 ILRDRGS-----------RQD----YS--HRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRT  204 (933)
T ss_pred             chhcccc-----------cee----ee--ccCCCCceeeEEecCCceeEEEEecceeEEEEecCCC
Confidence            2111100           000    00  0112369999999999984444455689999998644

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=96.95  E-value=0.11  Score=52.58  Aligned_cols=192  Identities=19%  Similarity=0.188  Sum_probs=105.3

Q ss_pred             CCCcEEEEeCCCCeEEEEecccC-CcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCC
Q 004468           70 DDTHINVWSYSSRKLLHSIETGH-SANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTR  148 (751)
Q Consensus        70 ~Dg~I~IWd~~~~~~~~~l~~~h-~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~  148 (751)
                      ++|+|..||..+|+.+.....+. .....+. ..+.  +..+++++.++.+..||..++          +.+..+.. ..
T Consensus         1 ~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~--~~~v~~~~~~~~l~~~d~~tG----------~~~W~~~~-~~   66 (238)
T PF13360_consen    1 DDGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVPD--GGRVYVASGDGNLYALDAKTG----------KVLWRFDL-PG   66 (238)
T ss_dssp             -TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEEE--TTEEEEEETTSEEEEEETTTS----------EEEEEEEC-SS
T ss_pred             CCCEEEEEECCCCCEEEEEECCCCCCCccce-EEEe--CCEEEEEcCCCEEEEEECCCC----------CEEEEeec-cc
Confidence            47899999999999998873321 1222222 2223  467777789999999999865          22333333 22


Q ss_pred             ceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEec-ccCceecccCCCCCccceEEEEEeCCC
Q 004468          149 RVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDL-RCGAKRSLADPPKQTLSLKSCDISSTR  227 (751)
Q Consensus       149 ~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~v~~i~~sp~~  227 (751)
                      .+....... + ..++.++.|+.|+.+|+.+++              ++|.. ....      ............+.   
T Consensus        67 ~~~~~~~~~-~-~~v~v~~~~~~l~~~d~~tG~--------------~~W~~~~~~~------~~~~~~~~~~~~~~---  121 (238)
T PF13360_consen   67 PISGAPVVD-G-GRVYVGTSDGSLYALDAKTGK--------------VLWSIYLTSS------PPAGVRSSSSPAVD---  121 (238)
T ss_dssp             CGGSGEEEE-T-TEEEEEETTSEEEEEETTTSC--------------EEEEEEE-SS------CTCSTB--SEEEEE---
T ss_pred             cccceeeec-c-cccccccceeeeEecccCCcc--------------eeeeeccccc------cccccccccCceEe---
Confidence            221111222 3 445566688899999999886              23431 1110      00001111222332   


Q ss_pred             CcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEE
Q 004468          228 PHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMD  307 (751)
Q Consensus       228 ~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwd  307 (751)
                      +..++++..++.|..+|+++++.+........+... .      .    .....+..-....++ .++++..++.+.-+|
T Consensus       122 ~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~-~------~----~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d  189 (238)
T PF13360_consen  122 GDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSS-P------I----SSFSDINGSPVISDG-RVYVSSGDGRVVAVD  189 (238)
T ss_dssp             TTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS---------E----EEETTEEEEEECCTT-EEEEECCTSSEEEEE
T ss_pred             cCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCc-c------e----eeecccccceEEECC-EEEEEcCCCeEEEEE
Confidence            468888888999999999998865544321111000 0      0    000012222233344 777777777544449


Q ss_pred             CCCCC
Q 004468          308 VNHAG  312 (751)
Q Consensus       308 l~~~~  312 (751)
                      +.+++
T Consensus       190 ~~tg~  194 (238)
T PF13360_consen  190 LATGE  194 (238)
T ss_dssp             TTTTE
T ss_pred             CCCCC
Confidence            99864

...

>smart00320 WD40 WD40 repeats

Probab=96.76  E-value=0.0037  Score=41.84  Aligned_cols=38  Identities=26%  Similarity=0.640  Sum_probs=32.8

Q ss_pred             eEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEE
Q 004468           83 KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFN  123 (751)
Q Consensus        83 ~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd  123 (751)
                      +.+..+ ..|...|.++.|.|.  +.++++++.|+.|++|+
T Consensus         3 ~~~~~~-~~~~~~i~~~~~~~~--~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTL-KGHTGPVTSVAFSPD--GKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEE-EecCCceeEEEECCC--CCEEEEecCCCeEEEcC
Confidence            455566 678999999999998  68999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=96.66  E-value=0.087  Score=45.67  Aligned_cols=104  Identities=22%  Similarity=0.171  Sum_probs=69.9

Q ss_pred             ceEEEEEecCCCC--cEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcE
Q 004468           95 NVFCTKFVPETSD--ELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTL  172 (751)
Q Consensus        95 ~V~~v~fsp~s~~--~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I  172 (751)
                      +|++++++.-.++  +.|+.|+.|..||||+-.            +.+..+. -.+.|.+++-..  +..|+.+-.+|+|
T Consensus         1 ~V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~------------e~~~Ei~-e~~~v~~L~~~~--~~~F~Y~l~NGTV   65 (111)
T PF14783_consen    1 NVTALCLFDFDGDGENELLVGSDDFEIRVFKGD------------EIVAEIT-ETDKVTSLCSLG--GGRFAYALANGTV   65 (111)
T ss_pred             CeeEEEEEecCCCCcceEEEecCCcEEEEEeCC------------cEEEEEe-cccceEEEEEcC--CCEEEEEecCCEE
Confidence            4778887764322  689999999999999877            3355554 356677776664  3678899999999


Q ss_pred             EEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEE---eCCCCcEEEEEeCCCeEE
Q 004468          173 RQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDI---SSTRPHLLLVGGSDAFAR  241 (751)
Q Consensus       173 ~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~---sp~~~~~l~sgs~D~~Ir  241 (751)
                      -+|+-..                .+|..++            +..++++.+   +.++..-|++|-.+|.|-
T Consensus        66 GvY~~~~----------------RlWRiKS------------K~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   66 GVYDRSQ----------------RLWRIKS------------KNQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             EEEeCcc----------------eeeeecc------------CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            9997532                2333322            123444444   443445799999988874

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=96.66  E-value=0.13  Score=60.24  Aligned_cols=212  Identities=15%  Similarity=0.210  Sum_probs=120.7

Q ss_pred             CEEEE-EeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCC-----CcEEEEEECCCcEEEEECCCCCCCCCCCCC
Q 004468           63 SLLIS-GSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETS-----DELVVSGAGDAEVRLFNLSRFSGRGLDDNA  136 (751)
Q Consensus        63 ~~LaS-gs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~-----~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~  136 (751)
                      ++|+. ......|.-.|+..|+.+.........+|..  |.|++.     +.-.+.|-.+..+..||.+....+...   
T Consensus       494 ~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~--~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~---  568 (794)
T PF08553_consen  494 NMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVD--IAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVD---  568 (794)
T ss_pred             ceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeE--ecccccccccCCCceEEEECCCceEEeccCCCCCceee---
Confidence            34343 3456778888999999999884333333444  444321     234556677889999999964211110   


Q ss_pred             CCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCcc
Q 004468          137 ITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTL  216 (751)
Q Consensus       137 ~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  216 (751)
                       ...+.+ .......|++.+. + -.||.|+.+|.||+|| +.+..                        .....|+-..
T Consensus       569 -~~~k~Y-~~~~~Fs~~aTt~-~-G~iavgs~~G~IRLyd-~~g~~------------------------AKT~lp~lG~  619 (794)
T PF08553_consen  569 -SQSKQY-SSKNNFSCFATTE-D-GYIAVGSNKGDIRLYD-RLGKR------------------------AKTALPGLGD  619 (794)
T ss_pred             -cccccc-ccCCCceEEEecC-C-ceEEEEeCCCcEEeec-ccchh------------------------hhhcCCCCCC
Confidence             001111 2344466777665 3 4788999999999999 33221                        1122344567


Q ss_pred             ceEEEEEeCCCCcEEEEEeCCCeEEEEeCCC--CCCc------cccCCCCCCCCccccccccccccC---CccccceEEE
Q 004468          217 SLKSCDISSTRPHLLLVGGSDAFARLYDRRM--LPPL------TSCQKRMSPPPCVNYFCPMHLSEH---GRSSLHLTHV  285 (751)
Q Consensus       217 ~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~--~~~~------~~~~~~~~~~~~~~~~~~~~~~~~---g~~~~~vt~v  285 (751)
                      +|..|+++.+ |++|++.+ +.++.|++..-  ++..      ..+.....|.+-...+.|.|....   +......+..
T Consensus       620 pI~~iDvt~D-GkwilaTc-~tyLlLi~t~~~~g~~~g~~GF~~~~~~~~kp~Pr~L~L~pe~~~~~~~~~~~~~~Ft~a  697 (794)
T PF08553_consen  620 PIIGIDVTAD-GKWILATC-KTYLLLIDTLIKDGKNSGKLGFEKSFGKDKKPQPRRLQLKPEHVAYMQHETGKPISFTPA  697 (794)
T ss_pred             CeeEEEecCC-CcEEEEee-cceEEEEEEeeecCCccCccccccccCccCCCCCeEEecCHHHHHHHHhccCCCceeece
Confidence            8999999995 77777655 56788888632  1110      112222233333334445443221   1112235666


Q ss_pred             EEcC--C-CCEEEEEeCCCcEEEEECCC
Q 004468          286 TFSP--N-GEEVLLSYSGEHVYLMDVNH  310 (751)
Q Consensus       286 ~fsp--d-g~~Ll~~s~d~~I~lwdl~~  310 (751)
                      .|+-  + ....++.+.+..+.+||+..
T Consensus       698 ~Fnt~~~~~E~~IvtstG~f~v~Wnf~k  725 (794)
T PF08553_consen  698 KFNTGIGKQETSIVTSTGPFVVTWNFKK  725 (794)
T ss_pred             EEecCCCCccceEEEeccCEEEEEEHHH
Confidence            7763  1 23456666677999999875

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PRK02888 nitrous-oxide reductase; Validated

Probab=96.59  E-value=0.043  Score=61.88  Aligned_cols=165  Identities=7%  Similarity=-0.023  Sum_probs=95.2

Q ss_pred             EECCCCCEEEEE-eCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEEC--------------------
Q 004468           57 SWNSKGSLLISG-SDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG--------------------  115 (751)
Q Consensus        57 ~~s~dg~~LaSg-s~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~--------------------  115 (751)
                      -++|||+.|... -..+.+.+.|..+.+...++..+  ++..-++++|+  |.++++.+.                    
T Consensus       199 PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vd--gnpd~v~~spd--Gk~afvTsyNsE~G~tl~em~a~e~d~~v  274 (635)
T PRK02888        199 PLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVD--GNLDNVDTDYD--GKYAFSTCYNSEEGVTLAEMMAAERDWVV  274 (635)
T ss_pred             ccCCCCCEeecccceeEEEEEEECccceEEEEEEeC--CCcccceECCC--CCEEEEeccCcccCcceeeeccccCceEE
Confidence            345677655333 33566778888887777776332  34566777887  666665541                    


Q ss_pred             --------------------CCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEE
Q 004468          116 --------------------DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQH  175 (751)
Q Consensus       116 --------------------Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iw  175 (751)
                                          ++.|.|.|..+.....     .+.+..+ .-......++++|++..+++++..+.+|.+.
T Consensus       275 vfni~~iea~vkdGK~~~V~gn~V~VID~~t~~~~~-----~~v~~yI-PVGKsPHGV~vSPDGkylyVanklS~tVSVI  348 (635)
T PRK02888        275 VFNIARIEEAVKAGKFKTIGGSKVPVVDGRKAANAG-----SALTRYV-PVPKNPHGVNTSPDGKYFIANGKLSPTVTVI  348 (635)
T ss_pred             EEchHHHHHhhhCCCEEEECCCEEEEEECCccccCC-----cceEEEE-ECCCCccceEECCCCCEEEEeCCCCCcEEEE
Confidence                                2334555544300000     0112222 2345677899999776677777889999999


Q ss_pred             ecCCCCCCCCCCCCCCccce-EEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCC
Q 004468          176 DFRQGSSCPPAGSSHQECRN-ILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM  247 (751)
Q Consensus       176 Dlr~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~  247 (751)
                      |+.+.+....   ...+.+. ++-...            -.......+|.++ ++.+.+-..|..|-.|++..
T Consensus       349 Dv~k~k~~~~---~~~~~~~~vvaeve------------vGlGPLHTaFDg~-G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        349 DVRKLDDLFD---GKIKPRDAVVAEPE------------LGLGPLHTAFDGR-GNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             EChhhhhhhh---ccCCccceEEEeec------------cCCCcceEEECCC-CCEEEeEeecceeEEEehHH
Confidence            9988653210   0000011 111111            1112234578884 68888889999999999875

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.59  E-value=0.31  Score=48.29  Aligned_cols=61  Identities=10%  Similarity=0.120  Sum_probs=46.3

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEE-EecCCCCcEEEEEECCCcEEEEECCC
Q 004468           62 GSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTK-FVPETSDELVVSGAGDAEVRLFNLSR  126 (751)
Q Consensus        62 g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~-fsp~s~~~~l~sgs~Dg~V~vwd~~~  126 (751)
                      |++++.|...|.+.+.+.++|.+...+...  +.|-+-+ ..++  +.+|..|+.|++.+.-|..+
T Consensus        63 gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~--~~vk~~a~~d~~--~glIycgshd~~~yalD~~~  124 (354)
T KOG4649|consen   63 GDFVVLGCYSGGLYFLCVKTGSQIWNFVIL--ETVKVRAQCDFD--GGLIYCGSHDGNFYALDPKT  124 (354)
T ss_pred             CCEEEEEEccCcEEEEEecchhheeeeeeh--hhhccceEEcCC--CceEEEecCCCcEEEecccc
Confidence            678899999999999999999887776322  2233322 3344  68999999999999888875

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=96.56  E-value=0.01  Score=65.21  Aligned_cols=74  Identities=20%  Similarity=0.339  Sum_probs=65.7

Q ss_pred             CCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceE-EEEEecCCCCcEEEEEECCCcEEEEECCCC
Q 004468           50 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVF-CTKFVPETSDELVVSGAGDAEVRLFNLSRF  127 (751)
Q Consensus        50 ~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~-~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~  127 (751)
                      .-.|..+.|+|.-.++|.+..+|.|.+.-+. .+.+.++ .-|..+++ +++|.|+  |++||.|-.||+|++.|+.++
T Consensus        20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwti-p~p~~~v~~sL~W~~D--GkllaVg~kdG~I~L~Dve~~   94 (665)
T KOG4640|consen   20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTI-PIPGENVTASLCWRPD--GKLLAVGFKDGTIRLHDVEKG   94 (665)
T ss_pred             ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEec-cCCCCccceeeeecCC--CCEEEEEecCCeEEEEEccCC
Confidence            3467789999999999999999999999987 7788888 45666777 9999999  899999999999999999975

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=96.53  E-value=0.14  Score=44.35  Aligned_cols=101  Identities=18%  Similarity=0.178  Sum_probs=69.3

Q ss_pred             EEEEEECC---CC-CEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCC
Q 004468           53 VNAISWNS---KG-SLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFS  128 (751)
Q Consensus        53 V~~l~~s~---dg-~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~  128 (751)
                      |++|++..   +| +.|+.||.|..|+||+-.  ..+..+  .-...|.++.-...   ..|+.+-.+|+|-||+-... 
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei--~e~~~v~~L~~~~~---~~F~Y~l~NGTVGvY~~~~R-   73 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEI--TETDKVTSLCSLGG---GRFAYALANGTVGVYDRSQR-   73 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEE--ecccceEEEEEcCC---CEEEEEecCCEEEEEeCcce-
Confidence            67777765   33 589999999999999844  566666  24566888877765   57888999999999987632 


Q ss_pred             CCCCCCCCCCCceeecccCCceeEEEEecCC---CCEEEEEeCCCcEE
Q 004468          129 GRGLDDNAITPSALYQCHTRRVKKLAVEVGN---PHVVWSASEDGTLR  173 (751)
Q Consensus       129 ~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~---~~~l~s~s~Dg~I~  173 (751)
                                 +...+. +..+.++++..-+   -.-|++|=.+|.|-
T Consensus        74 -----------lWRiKS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   74 -----------LWRIKS-KNQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             -----------eeeecc-CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence                       222322 3336677665422   23677888888763

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=96.47  E-value=0.012  Score=66.32  Aligned_cols=110  Identities=10%  Similarity=0.192  Sum_probs=83.2

Q ss_pred             EEEEECCCCCEEEEEe----CCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCC
Q 004468           54 NAISWNSKGSLLISGS----DDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSG  129 (751)
Q Consensus        54 ~~l~~s~dg~~LaSgs----~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~  129 (751)
                      +-..|+|...+||.++    .-|.|.|+- .+|.+...+  ...-.+++++|+|.  .-.|++|-.-|.+.+|...+.  
T Consensus        19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~V--t~P~hatSLCWHpe--~~vLa~gwe~g~~~v~~~~~~--   91 (1416)
T KOG3617|consen   19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDV--TYPVHATSLCWHPE--EFVLAQGWEMGVSDVQKTNTT--   91 (1416)
T ss_pred             cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCccc--ccceehhhhccChH--HHHHhhccccceeEEEecCCc--
Confidence            4467999999999886    467788875 345443322  12234678999999  567888888899999998763  


Q ss_pred             CCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCC
Q 004468          130 RGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQ  179 (751)
Q Consensus       130 ~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~  179 (751)
                              +.-.....|..+|..+.|++ +|..++|+..-|.|.+|....
T Consensus        92 --------e~htv~~th~a~i~~l~wS~-~G~~l~t~d~~g~v~lwr~d~  132 (1416)
T KOG3617|consen   92 --------ETHTVVETHPAPIQGLDWSH-DGTVLMTLDNPGSVHLWRYDV  132 (1416)
T ss_pred             --------eeeeeccCCCCCceeEEecC-CCCeEEEcCCCceeEEEEeee
Confidence                    22334457999999999999 678889999999999998764

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=96.37  E-value=1.5  Score=48.49  Aligned_cols=65  Identities=25%  Similarity=0.334  Sum_probs=45.7

Q ss_pred             EEECCCCCEEEEEeCC----------C-cEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEEC
Q 004468           56 ISWNSKGSLLISGSDD----------T-HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNL  124 (751)
Q Consensus        56 l~~s~dg~~LaSgs~D----------g-~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~  124 (751)
                      ++.+|.|-.+|...++          . .|.||+.. |+++.++.-.+ +.|.++.|..+   ..|+.-..||+++++|+
T Consensus        34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~s-G~ll~~i~w~~-~~iv~~~wt~~---e~LvvV~~dG~v~vy~~  108 (410)
T PF04841_consen   34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSS-GKLLSSIPWDS-GRIVGMGWTDD---EELVVVQSDGTVRVYDL  108 (410)
T ss_pred             EEEcCCCceEEEEecCcccccccCCCCcEEEEECCC-CCEeEEEEECC-CCEEEEEECCC---CeEEEEEcCCEEEEEeC
Confidence            4555655555555443          2 48999965 66777663333 89999999886   45556678999999998


Q ss_pred             C
Q 004468          125 S  125 (751)
Q Consensus       125 ~  125 (751)
                      .
T Consensus       109 ~  109 (410)
T PF04841_consen  109 F  109 (410)
T ss_pred             C
Confidence            6

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.29  E-value=0.73  Score=46.89  Aligned_cols=184  Identities=14%  Similarity=0.147  Sum_probs=117.8

Q ss_pred             eccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECC
Q 004468           46 LEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLS  125 (751)
Q Consensus        46 L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~  125 (751)
                      +.|-+..|.+|.|+|+.+.|.+-.....-.||=..+|..+.++....-...-.|.+.-+  |+++++--.++.+.++.+.
T Consensus        81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~--n~fvi~dER~~~l~~~~vd  158 (316)
T COG3204          81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGG--NQFVIVDERDRALYLFTVD  158 (316)
T ss_pred             cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecC--CEEEEEehhcceEEEEEEc
Confidence            45666679999999999999888888888998888899998874433344556777776  7888888888999988887


Q ss_pred             CCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCce
Q 004468          126 RFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAK  205 (751)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~  205 (751)
                      ............-++......+...-.++|.|.+ +.|+.+-+-.-+.||.+.........        ....+...   
T Consensus       159 ~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~-~~l~~aKEr~P~~I~~~~~~~~~l~~--------~~~~~~~~---  226 (316)
T COG3204         159 ADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVD-HRLFVAKERNPIGIFEVTQSPSSLSV--------HASLDPTA---  226 (316)
T ss_pred             CCccEEeccceEEeccccCCCCcCceeeecCCCC-ceEEEEEccCCcEEEEEecCCccccc--------ccccCccc---
Confidence            5422111000001112222225556789999955 56667777777888776643211000        00000000   


Q ss_pred             ecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCC
Q 004468          206 RSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM  247 (751)
Q Consensus       206 ~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~  247 (751)
                          ..+-....|.++.|++..+++++-+..++.+.-.|+.-
T Consensus       227 ----~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G  264 (316)
T COG3204         227 ----DRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSG  264 (316)
T ss_pred             ----ccceEeeccccceecCCCCcEEEEecCCceEEEEecCC
Confidence                00001235778889988788888888888888888753

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=96.13  E-value=0.2  Score=54.65  Aligned_cols=227  Identities=15%  Similarity=0.161  Sum_probs=115.2

Q ss_pred             hhhhccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEec-c------cCCcceEEEEEec---
Q 004468           34 SSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIE-T------GHSANVFCTKFVP---  103 (751)
Q Consensus        34 ~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~-~------~h~~~V~~v~fsp---  103 (751)
                      ..+.+.+.+..-++...+.|++++.|. =-++|.|..+|.+.|.|+.....+..-. .      .....|+++.|..   
T Consensus        70 ~~~~~gf~P~~l~~~~~g~vtal~~S~-iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~  148 (395)
T PF08596_consen   70 PSLKEGFLPLTLLDAKQGPVTALKNSD-IGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTL  148 (395)
T ss_dssp             TT-SEEEEEEEEE---S-SEEEEEE-B-TSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-
T ss_pred             cccccccCchhheeccCCcEeEEecCC-CcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEec
Confidence            344556788888888899999999984 4499999999999999997766665421 1      2345688898873   


Q ss_pred             CCCC---cEEEEEECCCcEEEEECCC-CCCCCCCCCCCCCceeecccCCceeEEE-EecCC-------------------
Q 004468          104 ETSD---ELVVSGAGDAEVRLFNLSR-FSGRGLDDNAITPSALYQCHTRRVKKLA-VEVGN-------------------  159 (751)
Q Consensus       104 ~s~~---~~l~sgs~Dg~V~vwd~~~-~~~~~~~~~~~~~~~~~~~h~~~V~~l~-~sp~~-------------------  159 (751)
                      ..++   -.++.|...|.+.+|.+.- ..+...    .+.......+.++|..|. |+.+.                   
T Consensus       149 ~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~----v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~  224 (395)
T PF08596_consen  149 GGDGYSSICLLVGTNSGNVLTFKILPSSNGRFS----VQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGIS  224 (395)
T ss_dssp             TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EE----EEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT--
T ss_pred             CCCcccceEEEEEeCCCCEEEEEEecCCCCceE----EEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCC
Confidence            2112   4678888999999998862 111100    011112224556666554 32111                   


Q ss_pred             -CCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEe----CCCCcEEEEE
Q 004468          160 -PHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDIS----STRPHLLLVG  234 (751)
Q Consensus       160 -~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~s----p~~~~~l~sg  234 (751)
                       +.+++. ..+..||++..-+.+..           ...+              ........+.+-    ...+..|++-
T Consensus       225 i~g~vVv-vSe~~irv~~~~~~k~~-----------~K~~--------------~~~~~~~~~~vv~~~~~~~~~~Lv~l  278 (395)
T PF08596_consen  225 IPGYVVV-VSESDIRVFKPPKSKGA-----------HKSF--------------DDPFLCSSASVVPTISRNGGYCLVCL  278 (395)
T ss_dssp             --EEEEE-E-SSEEEEE-TT---EE-----------EEE---------------SS-EEEEEEEEEEEE-EEEEEEEEEE
T ss_pred             cCcEEEE-EcccceEEEeCCCCccc-----------ceee--------------ccccccceEEEEeecccCCceEEEEE
Confidence             123333 33567888776654421           1111              011222233332    1135678888


Q ss_pred             eCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 004468          235 GSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVN  309 (751)
Q Consensus       235 s~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~  309 (751)
                      ..+|.|++|.+-.++++.......            ..    ... .+....|+++|..++..+.. .+.+|.+-
T Consensus       279 ~~~G~i~i~SLP~Lkei~~~~l~~------------~~----d~~-~~~~ssis~~Gdi~~~~gps-E~~l~sv~  335 (395)
T PF08596_consen  279 FNNGSIRIYSLPSLKEIKSVSLPP------------PL----DSR-RLSSSSISRNGDIFYWTGPS-EIQLFSVW  335 (395)
T ss_dssp             ETTSEEEEEETTT--EEEEEE-SS-------------------HH-HHTT-EE-TTS-EEEE-SSS-EEEEEEEE
T ss_pred             ECCCcEEEEECCCchHhhcccCCC------------cc----ccc-cccccEECCCCCEEEEeCcc-cEEEEEEE
Confidence            999999999998887665432110            00    000 13456779999977666543 44444433

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=96.13  E-value=0.91  Score=49.66  Aligned_cols=204  Identities=17%  Similarity=0.200  Sum_probs=127.8

Q ss_pred             cEEEEEECCCCC-EEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEE-E--CCCcEEEEECCCC
Q 004468           52 CVNAISWNSKGS-LLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSG-A--GDAEVRLFNLSRF  127 (751)
Q Consensus        52 ~V~~l~~s~dg~-~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sg-s--~Dg~V~vwd~~~~  127 (751)
                      .-+.++.++.+. ..++...+..|.+.|..+.+....+..+.  ....+++.|+  +..+..+ .  .+++|.+.|-.+.
T Consensus        75 ~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~--~P~~~~~~~~--~~~vYV~n~~~~~~~vsvid~~t~  150 (381)
T COG3391          75 YPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL--GPVGLAVDPD--GKYVYVANAGNGNNTVSVIDAATN  150 (381)
T ss_pred             cccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc--CCceEEECCC--CCEEEEEecccCCceEEEEeCCCC
Confidence            345678888887 56666667899999988888887775554  6788999999  5555444 4  3678888877753


Q ss_pred             CCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceec
Q 004468          128 SGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRS  207 (751)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  207 (751)
                                ..+.....-..+ ..+++.|++...+++-..+++|.+.|........  ...             +.   
T Consensus       151 ----------~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~--~~~-------------~~---  201 (381)
T COG3391         151 ----------KVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR--GSV-------------GS---  201 (381)
T ss_pred             ----------eEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec--ccc-------------cc---
Confidence                      223332222233 7899999665566666789999999976654210  000             00   


Q ss_pred             ccCCCCCccceEEEEEeCCCCcEEEEEeCC--CeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEE
Q 004468          208 LADPPKQTLSLKSCDISSTRPHLLLVGGSD--AFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHV  285 (751)
Q Consensus       208 ~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D--~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v  285 (751)
                         .-.....-..+.++|++.+..++-..+  +.+...|..+.......            . +   .   ... ....+
T Consensus       202 ---~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~------------~-~---~---~~~-~~~~v  258 (381)
T COG3391         202 ---LVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATD------------L-P---V---GSG-APRGV  258 (381)
T ss_pred             ---ccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEec------------c-c---c---ccC-CCCce
Confidence               000112234578888644344444333  58888888875432210            0 0   0   001 14568


Q ss_pred             EEcCCCCEEEEEeC-CCcEEEEECCCC
Q 004468          286 TFSPNGEEVLLSYS-GEHVYLMDVNHA  311 (751)
Q Consensus       286 ~fspdg~~Ll~~s~-d~~I~lwdl~~~  311 (751)
                      .++|+|+++.+... .+.+.+.|..+.
T Consensus       259 ~~~p~g~~~yv~~~~~~~V~vid~~~~  285 (381)
T COG3391         259 AVDPAGKAAYVANSQGGTVSVIDGATD  285 (381)
T ss_pred             eECCCCCEEEEEecCCCeEEEEeCCCC
Confidence            99999999888855 589999998874

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=96.05  E-value=0.094  Score=59.60  Aligned_cols=71  Identities=13%  Similarity=0.258  Sum_probs=62.3

Q ss_pred             EEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCC
Q 004468           53 VNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSR  126 (751)
Q Consensus        53 V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~  126 (751)
                      +++++|+|..-.||+|-.-|.+.+|...+.+ .+++...|+.+|..+.|+|+  |..++|+..=|.|.+|....
T Consensus        62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e-~htv~~th~a~i~~l~wS~~--G~~l~t~d~~g~v~lwr~d~  132 (1416)
T KOG3617|consen   62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTE-THTVVETHPAPIQGLDWSHD--GTVLMTLDNPGSVHLWRYDV  132 (1416)
T ss_pred             hhhhccChHHHHHhhccccceeEEEecCCce-eeeeccCCCCCceeEEecCC--CCeEEEcCCCceeEEEEeee
Confidence            5579999999999999999999999977544 45555789999999999999  89999999999999998873

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=95.98  E-value=0.38  Score=56.41  Aligned_cols=133  Identities=14%  Similarity=0.128  Sum_probs=88.1

Q ss_pred             ccchhhhccccccEEeccCCCc-EEEEEECC-----CCCEEEEEeCCCcEEEEeCCCC--eEEEE-ec-ccCCcceEEEE
Q 004468           31 QMHSSLVRRLSQERELEGHQGC-VNAISWNS-----KGSLLISGSDDTHINVWSYSSR--KLLHS-IE-TGHSANVFCTK  100 (751)
Q Consensus        31 ~~~~~~i~~~~~~~~L~gH~~~-V~~l~~s~-----dg~~LaSgs~Dg~I~IWd~~~~--~~~~~-l~-~~h~~~V~~v~  100 (751)
                      +++...+.+.+.+.+.+-|... |..++=..     +......|=.+..|..||+.-.  +++.. .. -.......|++
T Consensus       505 ~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~a  584 (794)
T PF08553_consen  505 KLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFA  584 (794)
T ss_pred             ceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCceEEE
Confidence            4555678889999999988755 65554321     1334566777889999998642  23321 10 12334566666


Q ss_pred             EecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecC
Q 004468          101 FVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFR  178 (751)
Q Consensus       101 fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr  178 (751)
                      -..+   -+||.|+.+|.||+||-..   .       .....+.+-..+|..|..+. +|++++. ..+..|.++++.
T Consensus       585 Tt~~---G~iavgs~~G~IRLyd~~g---~-------~AKT~lp~lG~pI~~iDvt~-DGkwila-Tc~tyLlLi~t~  647 (794)
T PF08553_consen  585 TTED---GYIAVGSNKGDIRLYDRLG---K-------RAKTALPGLGDPIIGIDVTA-DGKWILA-TCKTYLLLIDTL  647 (794)
T ss_pred             ecCC---ceEEEEeCCCcEEeecccc---h-------hhhhcCCCCCCCeeEEEecC-CCcEEEE-eecceEEEEEEe
Confidence            5544   5899999999999999432   1       33556677789999999999 5555533 335678888864

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=95.91  E-value=0.25  Score=58.75  Aligned_cols=155  Identities=14%  Similarity=0.133  Sum_probs=93.7

Q ss_pred             EEEEECCCCCEEEEE-----eCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEE---CCCcEEEEECC
Q 004468           54 NAISWNSKGSLLISG-----SDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGA---GDAEVRLFNLS  125 (751)
Q Consensus        54 ~~l~~s~dg~~LaSg-----s~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs---~Dg~V~vwd~~  125 (751)
                      ..|.|--||+++|+.     ..-++|+|||-+ |.+-..- ..-.+-=.+++|-|.  |.++++-.   .|+.|.++.-+
T Consensus       199 ~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~s-e~~~~l~~~LsWkPs--gs~iA~iq~~~sd~~IvffErN  274 (1265)
T KOG1920|consen  199 TSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTS-EPVEGLQHSLSWKPS--GSLIAAIQCKTSDSDIVFFERN  274 (1265)
T ss_pred             ceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhccc-CcccccccceeecCC--CCeEeeeeecCCCCcEEEEecC
Confidence            368999999999983     333899999977 4433222 233344568999997  88888753   45678888766


Q ss_pred             CCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEE---EeCCCcEEEEecCCCCCCCCCCCCCCccceEEEeccc
Q 004468          126 RFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWS---ASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRC  202 (751)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s---~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~  202 (751)
                      .....       .....+......|..++|+. ++.+|+.   ......|++|-+...+                |.++.
T Consensus       275 GL~hg-------~f~l~~p~de~~ve~L~Wns-~sdiLAv~~~~~e~~~v~lwt~~Nyh----------------WYLKq  330 (1265)
T KOG1920|consen  275 GLRHG-------EFVLPFPLDEKEVEELAWNS-NSDILAVVTSNLENSLVQLWTTGNYH----------------WYLKQ  330 (1265)
T ss_pred             Ccccc-------ccccCCcccccchheeeecC-CCCceeeeecccccceEEEEEecCeE----------------EEEEE
Confidence            32110       11112223344489999998 6677776   4555559999876543                22111


Q ss_pred             CceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeC
Q 004468          203 GAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDR  245 (751)
Q Consensus       203 ~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~  245 (751)
                      .    +....   ..  -+.|+|..+..+.+-..+|.+.++|.
T Consensus       331 ~----l~~~~---~~--~~~W~p~~~~~L~v~~~sG~~~v~~~  364 (1265)
T KOG1920|consen  331 E----LQFSQ---KA--LLMWDPVTEKTLHVLRESGQRLVRDF  364 (1265)
T ss_pred             E----Eeccc---cc--cccccCCCceeEEEEecCCcEEEEEE
Confidence            1    11110   00  16677766666666556776666665

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=95.89  E-value=0.33  Score=53.41  Aligned_cols=181  Identities=14%  Similarity=0.136  Sum_probs=99.9

Q ss_pred             EEEEEeCCCcEEEEeCCCCeEEEEecccCCc------ceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCC
Q 004468           64 LLISGSDDTHINVWSYSSRKLLHSIETGHSA------NVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAI  137 (751)
Q Consensus        64 ~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~------~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~  137 (751)
                      .++.++.++.+...|..+|+.+.........      ....+.-+|--.+..++.++.++.+..+|..++..        
T Consensus       207 ~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~--------  278 (394)
T PRK11138        207 GAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQI--------  278 (394)
T ss_pred             EEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCE--------
Confidence            4666777888988999888876654211110      01111122211145677777899999999986521        


Q ss_pred             CCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccc
Q 004468          138 TPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLS  217 (751)
Q Consensus       138 ~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  217 (751)
                        +-...  ......+...  + ..+..++.||.+..+|..+++.              +|......          ...
T Consensus       279 --~W~~~--~~~~~~~~~~--~-~~vy~~~~~g~l~ald~~tG~~--------------~W~~~~~~----------~~~  327 (394)
T PRK11138        279 --VWKRE--YGSVNDFAVD--G-GRIYLVDQNDRVYALDTRGGVE--------------LWSQSDLL----------HRL  327 (394)
T ss_pred             --EEeec--CCCccCcEEE--C-CEEEEEcCCCeEEEEECCCCcE--------------EEcccccC----------CCc
Confidence              11111  1111122222  3 4555677899999999988752              23211000          001


Q ss_pred             eEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEE
Q 004468          218 LKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLS  297 (751)
Q Consensus       218 v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~  297 (751)
                      ..+..+.   +.+|++++.||.|.+.|..+++.+.....                .   ... ...+..+  .+..|+++
T Consensus       328 ~~sp~v~---~g~l~v~~~~G~l~~ld~~tG~~~~~~~~----------------~---~~~-~~s~P~~--~~~~l~v~  382 (394)
T PRK11138        328 LTAPVLY---NGYLVVGDSEGYLHWINREDGRFVAQQKV----------------D---SSG-FLSEPVV--ADDKLLIQ  382 (394)
T ss_pred             ccCCEEE---CCEEEEEeCCCEEEEEECCCCCEEEEEEc----------------C---CCc-ceeCCEE--ECCEEEEE
Confidence            1111222   35788899999999999998765433210                0   000 0111112  24578999


Q ss_pred             eCCCcEEEEEC
Q 004468          298 YSGEHVYLMDV  308 (751)
Q Consensus       298 s~d~~I~lwdl  308 (751)
                      +.||.|+.++.
T Consensus       383 t~~G~l~~~~~  393 (394)
T PRK11138        383 ARDGTVYAITR  393 (394)
T ss_pred             eCCceEEEEeC
Confidence            99999999874

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=95.81  E-value=0.22  Score=53.93  Aligned_cols=255  Identities=16%  Similarity=0.183  Sum_probs=124.7

Q ss_pred             CCCCCEEEEE---------eCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCC
Q 004468           59 NSKGSLLISG---------SDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSG  129 (751)
Q Consensus        59 s~dg~~LaSg---------s~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~  129 (751)
                      |||+++++..         +..+.+.|||+.+++..... .. ...+....|+|+  |+.|+-.. ++.|.+++...+..
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~-~~-~~~~~~~~~sP~--g~~~~~v~-~~nly~~~~~~~~~   75 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLT-PP-PPKLQDAKWSPD--GKYIAFVR-DNNLYLRDLATGQE   75 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS--E-ETTBSEEEE-SS--STEEEEEE-TTEEEEESSTTSEE
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECc-CC-ccccccceeecC--CCeeEEEe-cCceEEEECCCCCe
Confidence            6788877764         23567899999987655433 22 677899999999  78888765 68899998875422


Q ss_pred             CCCCCCCCCCceeeccc---------CCceeEEEEecCCCCEEEEE-eCCCcEEEEecCC---CCC--C-------CCCC
Q 004468          130 RGLDDNAITPSALYQCH---------TRRVKKLAVEVGNPHVVWSA-SEDGTLRQHDFRQ---GSS--C-------PPAG  187 (751)
Q Consensus       130 ~~~~~~~~~~~~~~~~h---------~~~V~~l~~sp~~~~~l~s~-s~Dg~I~iwDlr~---~~~--~-------~~~~  187 (751)
                      ..+....  .-..+.|-         -+.-..+-|||++ +.|+.. -.+..|+.+.+-.   ...  .       +..+
T Consensus        76 ~~lT~dg--~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~-~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G  152 (353)
T PF00930_consen   76 TQLTTDG--EPGIYNGVPDWVYEEEVFDRRSAVWWSPDS-KYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAG  152 (353)
T ss_dssp             EESES----TTTEEESB--HHHHHHTSSSSBSEEE-TTS-SEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTT
T ss_pred             EEecccc--ceeEEcCccceeccccccccccceEECCCC-CEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCC
Confidence            2111000  00001111         1223568899954 555544 4455555444322   211  0       1122


Q ss_pred             CCCCccceEEEecccCceecccCC---CCCccceEEEEEeCCCCcEEEEE--eCC---CeEEEEeCCCCCCccccCCCCC
Q 004468          188 SSHQECRNILLDLRCGAKRSLADP---PKQTLSLKSCDISSTRPHLLLVG--GSD---AFARLYDRRMLPPLTSCQKRMS  259 (751)
Q Consensus       188 ~~~~~~~~~l~~~~~~~~~~~~~~---~~~~~~v~~i~~sp~~~~~l~sg--s~D---~~IriwD~~~~~~~~~~~~~~~  259 (751)
                      .........++++..+....+...   ......+..+.|.++ +..|++.  ..+   ..+.++|..++......     
T Consensus       153 ~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d-~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~-----  226 (353)
T PF00930_consen  153 DPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPD-GKRLWVQWLNRDQNRLDLVLCDASTGETRVVL-----  226 (353)
T ss_dssp             S---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEET-TEEEEEEEEETTSTEEEEEEEEECTTTCEEEE-----
T ss_pred             CcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCC-CcEEEEEEcccCCCEEEEEEEECCCCceeEEE-----
Confidence            222233345677766655433333   234567889999995 4533332  222   34566676654321111     


Q ss_pred             CCCccccccccccccCCccccceEEEEEc-CCCCEEE-EEeCCC--cEEEEECCCCCcceeeeecCCCceeEEeCCCCCC
Q 004468          260 PPPCVNYFCPMHLSEHGRSSLHLTHVTFS-PNGEEVL-LSYSGE--HVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNG  335 (751)
Q Consensus       260 ~~~~~~~~~~~~~~~~g~~~~~vt~v~fs-pdg~~Ll-~~s~d~--~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp~~~~  335 (751)
                           ....+.-+      . .-....|. +++..++ ....+|  +|++++...+....+..+.-.+...+.+.+..+.
T Consensus       227 -----~e~~~~Wv------~-~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~  294 (353)
T PF00930_consen  227 -----EETSDGWV------D-VYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNR  294 (353)
T ss_dssp             -----EEESSSSS------S-SSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSE
T ss_pred             -----EecCCcce------e-eecccccccCCCCEEEEEEEcCCCcEEEEEcccccceeccccCceeecccceEcCCCCE
Confidence                 00000111      0 11234454 6666544 444565  6666677664322222222223346777777666


Q ss_pred             cccC
Q 004468          336 LELQ  339 (751)
Q Consensus       336 ~~~~  339 (751)
                      +.+.
T Consensus       295 iyf~  298 (353)
T PF00930_consen  295 IYFT  298 (353)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            5544

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=95.81  E-value=0.83  Score=50.24  Aligned_cols=201  Identities=11%  Similarity=0.042  Sum_probs=108.0

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEE------EEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCC
Q 004468           61 KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFC------TKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDD  134 (751)
Q Consensus        61 dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~------v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~  134 (751)
                      .+..+..++.++.|.-+|..+|+.+..........+..      +.-.|--.+..++.++.++.+..+|..+++.     
T Consensus        68 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~-----  142 (394)
T PRK11138         68 AYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEV-----  142 (394)
T ss_pred             ECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCC-----
Confidence            35677788888999999999999888763322111110      0001111145677788899999999986532     


Q ss_pred             CCCCCceeecccCCceeE-EEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCC
Q 004468          135 NAITPSALYQCHTRRVKK-LAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPK  213 (751)
Q Consensus       135 ~~~~~~~~~~~h~~~V~~-l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  213 (751)
                           +-...... .+.+ ....  + ..++.++.+|.|..+|..+++.              +|........ + ....
T Consensus       143 -----~W~~~~~~-~~~ssP~v~--~-~~v~v~~~~g~l~ald~~tG~~--------------~W~~~~~~~~-~-~~~~  197 (394)
T PRK11138        143 -----AWQTKVAG-EALSRPVVS--D-GLVLVHTSNGMLQALNESDGAV--------------KWTVNLDVPS-L-TLRG  197 (394)
T ss_pred             -----cccccCCC-ceecCCEEE--C-CEEEEECCCCEEEEEEccCCCE--------------eeeecCCCCc-c-cccC
Confidence                 22222111 1111 1121  3 3455677889999999998863              3332221000 0 0000


Q ss_pred             CccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcC--CC
Q 004468          214 QTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP--NG  291 (751)
Q Consensus       214 ~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fsp--dg  291 (751)
                      ...++    +.   ...+++++.++.+..+|..+++.+...........  ..+            .....+.-+|  .+
T Consensus       198 ~~sP~----v~---~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~--~~~------------~~~~~~~~sP~v~~  256 (394)
T PRK11138        198 ESAPA----TA---FGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGA--TEI------------DRLVDVDTTPVVVG  256 (394)
T ss_pred             CCCCE----EE---CCEEEEEcCCCEEEEEEccCChhhheeccccCCCc--cch------------hcccccCCCcEEEC
Confidence            01111    11   23567778889999999988775543221100000  000            0001111122  25


Q ss_pred             CEEEEEeCCCcEEEEECCCCC
Q 004468          292 EEVLLSYSGEHVYLMDVNHAG  312 (751)
Q Consensus       292 ~~Ll~~s~d~~I~lwdl~~~~  312 (751)
                      ..|++++.++.++.+|+.+++
T Consensus       257 ~~vy~~~~~g~l~ald~~tG~  277 (394)
T PRK11138        257 GVVYALAYNGNLVALDLRSGQ  277 (394)
T ss_pred             CEEEEEEcCCeEEEEECCCCC
Confidence            567778889999999999864

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=95.73  E-value=1.8  Score=47.38  Aligned_cols=122  Identities=13%  Similarity=0.147  Sum_probs=74.0

Q ss_pred             cEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeE------------------------------------------EEEec
Q 004468           52 CVNAISWNSKGSLLISGSDDTHINVWSYSSRKL------------------------------------------LHSIE   89 (751)
Q Consensus        52 ~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~------------------------------------------~~~l~   89 (751)
                      .|+.+.|.++.--||.|-..|.|.||.....+.                                          ...+.
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~   82 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL   82 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence            588999999988899999999999986431110                                          01111


Q ss_pred             ccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEec----CCC---CE
Q 004468           90 TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEV----GNP---HV  162 (751)
Q Consensus        90 ~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp----~~~---~~  162 (751)
                      ....+.|++++.+.-   -+++.|..+|.+.|.|++.+.--..  ........-......|+++.|..    +++   -.
T Consensus        83 ~~~~g~vtal~~S~i---GFvaigy~~G~l~viD~RGPavI~~--~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~  157 (395)
T PF08596_consen   83 DAKQGPVTALKNSDI---GFVAIGYESGSLVVIDLRGPAVIYN--ENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSIC  157 (395)
T ss_dssp             ---S-SEEEEEE-BT---SEEEEEETTSEEEEEETTTTEEEEE--EEGGG--T-SS----EEEEEEEEEE-TTSSSEEEE
T ss_pred             eccCCcEeEEecCCC---cEEEEEecCCcEEEEECCCCeEEee--ccccccccccccccCeeEEEEEEEecCCCcccceE
Confidence            234688999999855   5999999999999999975311000  00000000111345688898872    233   36


Q ss_pred             EEEEeCCCcEEEEecC
Q 004468          163 VWSASEDGTLRQHDFR  178 (751)
Q Consensus       163 l~s~s~Dg~I~iwDlr  178 (751)
                      ++.|...|.+.+|.+-
T Consensus       158 L~vGTn~G~v~~fkIl  173 (395)
T PF08596_consen  158 LLVGTNSGNVLTFKIL  173 (395)
T ss_dssp             EEEEETTSEEEEEEEE
T ss_pred             EEEEeCCCCEEEEEEe
Confidence            8889999999999885

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=95.72  E-value=1.7  Score=46.20  Aligned_cols=146  Identities=12%  Similarity=0.139  Sum_probs=88.2

Q ss_pred             CCEEEEEeC----------CCcEEEEeCCCC-----eEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCC
Q 004468           62 GSLLISGSD----------DTHINVWSYSSR-----KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSR  126 (751)
Q Consensus        62 g~~LaSgs~----------Dg~I~IWd~~~~-----~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~  126 (751)
                      -.+|+.|..          .|.|.++++...     +..........++|++++-..   +. |+.+. .+.|.+|++..
T Consensus        42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~~---~~-lv~~~-g~~l~v~~l~~  116 (321)
T PF03178_consen   42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSFN---GR-LVVAV-GNKLYVYDLDN  116 (321)
T ss_dssp             SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEET---TE-EEEEE-TTEEEEEEEET
T ss_pred             cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhhC---CE-EEEee-cCEEEEEEccC
Confidence            468887753          288999999873     322222235678999998772   45 44443 48999999986


Q ss_pred             CCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCcee
Q 004468          127 FSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKR  206 (751)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~  206 (751)
                      ..  .     ..+...+.. ...|.++...   +++++.|...+.|.++..+.....          ...+-        
T Consensus       117 ~~--~-----l~~~~~~~~-~~~i~sl~~~---~~~I~vgD~~~sv~~~~~~~~~~~----------l~~va--------  167 (321)
T PF03178_consen  117 SK--T-----LLKKAFYDS-PFYITSLSVF---KNYILVGDAMKSVSLLRYDEENNK----------LILVA--------  167 (321)
T ss_dssp             TS--S-----EEEEEEE-B-SSSEEEEEEE---TTEEEEEESSSSEEEEEEETTTE-----------EEEEE--------
T ss_pred             cc--c-----chhhheecc-eEEEEEEecc---ccEEEEEEcccCEEEEEEEccCCE----------EEEEE--------
Confidence            42  0     012222222 2356666654   358888888888887755542100          01110        


Q ss_pred             cccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCC
Q 004468          207 SLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRR  246 (751)
Q Consensus       207 ~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~  246 (751)
                         . .....+++++.|-+++ +.++++..+|.|.++...
T Consensus       168 ---~-d~~~~~v~~~~~l~d~-~~~i~~D~~gnl~~l~~~  202 (321)
T PF03178_consen  168 ---R-DYQPRWVTAAEFLVDE-DTIIVGDKDGNLFVLRYN  202 (321)
T ss_dssp             ---E-ESS-BEEEEEEEE-SS-SEEEEEETTSEEEEEEE-
T ss_pred             ---e-cCCCccEEEEEEecCC-cEEEEEcCCCeEEEEEEC
Confidence               0 1124578899998754 699999999999999875

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=95.67  E-value=0.24  Score=45.90  Aligned_cols=97  Identities=13%  Similarity=-0.019  Sum_probs=77.9

Q ss_pred             HHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcchHHHHH
Q 004468          369 IARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMS  448 (751)
Q Consensus       369 ~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~a~~~~~  448 (751)
                      .+......|. +..++..|..++...+..      ...+.+++.++...+   +.-.|+.....++.++|.++.++++++
T Consensus        30 ~g~~~~~~g~-~~~A~~~~~~al~~~P~~------~~a~~~lg~~~~~~g---~~~~A~~~y~~Al~l~p~~~~a~~~lg   99 (144)
T PRK15359         30 SGYASWQEGD-YSRAVIDFSWLVMAQPWS------WRAHIALAGTWMMLK---EYTTAINFYGHALMLDASHPEPVYQTG   99 (144)
T ss_pred             HHHHHHHcCC-HHHHHHHHHHHHHcCCCc------HHHHHHHHHHHHHHh---hHHHHHHHHHHHHhcCCCCcHHHHHHH
Confidence            3455566666 888899999988765543      446677777776644   355688889999999999999999999


Q ss_pred             HHHHHhcchHHHHHHHHHhcccCCCCh
Q 004468          449 EALEQLCKYKEALDFAIAAQCLDPSNS  475 (751)
Q Consensus       449 ~~l~~l~~~~~a~~~~~~~~~~~p~~~  475 (751)
                      .|+..+|++.+|..++.......|...
T Consensus       100 ~~l~~~g~~~eAi~~~~~Al~~~p~~~  126 (144)
T PRK15359        100 VCLKMMGEPGLAREAFQTAIKMSYADA  126 (144)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCh
Confidence            999999999999999999888888654

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=95.64  E-value=0.08  Score=59.26  Aligned_cols=124  Identities=19%  Similarity=0.190  Sum_probs=86.5

Q ss_pred             cCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeC
Q 004468          146 HTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISS  225 (751)
Q Consensus       146 h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp  225 (751)
                      |...|+--++.. ...+++-|+.-|.+.+|+-..++....                        ...+....+..+.+++
T Consensus        32 ~~~~v~lTc~ds-t~~~l~~GsS~G~lyl~~R~~~~~~~~------------------------~~~~~~~~~~~~~vs~   86 (726)
T KOG3621|consen   32 FPARVKLTCVDA-TEEYLAMGSSAGSVYLYNRHTGEMRKL------------------------KNEGATGITCVRSVSS   86 (726)
T ss_pred             CcceEEEEEeec-CCceEEEecccceEEEEecCchhhhcc------------------------cccCccceEEEEEecc
Confidence            445555556665 567899999999999998766653211                        1111234456677888


Q ss_pred             CCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEE
Q 004468          226 TRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYL  305 (751)
Q Consensus       226 ~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~l  305 (751)
                      . .+++|.|+..|.|.++-+....+           +-..++.+.+..   | ...||+++|++|+..|++|...|+|.+
T Consensus        87 ~-e~lvAagt~~g~V~v~ql~~~~p-----------~~~~~~t~~d~~---~-~~rVTal~Ws~~~~k~ysGD~~Gkv~~  150 (726)
T KOG3621|consen   87 V-EYLVAAGTASGRVSVFQLNKELP-----------RDLDYVTPCDKS---H-KCRVTALEWSKNGMKLYSGDSQGKVVL  150 (726)
T ss_pred             h-hHhhhhhcCCceEEeehhhccCC-----------Ccceeecccccc---C-CceEEEEEecccccEEeecCCCceEEE
Confidence            5 68899999999999998876332           122333333321   2 236999999999999999999999999


Q ss_pred             EECCC
Q 004468          306 MDVNH  310 (751)
Q Consensus       306 wdl~~  310 (751)
                      -.++.
T Consensus       151 ~~L~s  155 (726)
T KOG3621|consen  151 TELDS  155 (726)
T ss_pred             EEech
Confidence            98887

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=95.57  E-value=1.3  Score=47.90  Aligned_cols=72  Identities=11%  Similarity=0.163  Sum_probs=44.6

Q ss_pred             CCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccC----------------CcceEEEEEecCCCCcEEEEE
Q 004468           50 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGH----------------SANVFCTKFVPETSDELVVSG  113 (751)
Q Consensus        50 ~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h----------------~~~V~~v~fsp~s~~~~l~sg  113 (751)
                      ...+....|||+|+.||-.. ++.|.+++..++...+....|-                -+.-..+-|||+  +++|+..
T Consensus        42 ~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd--~~~la~~  118 (353)
T PF00930_consen   42 PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPD--SKYLAFL  118 (353)
T ss_dssp             ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TT--SSEEEEE
T ss_pred             ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCC--CCEEEEE
Confidence            66788999999999999885 5789999988775443322220                012246789999  6777765


Q ss_pred             EC-CCcEEEEEC
Q 004468          114 AG-DAEVRLFNL  124 (751)
Q Consensus       114 s~-Dg~V~vwd~  124 (751)
                      .. +..|+.+.+
T Consensus       119 ~~d~~~v~~~~~  130 (353)
T PF00930_consen  119 RFDEREVPEYPL  130 (353)
T ss_dssp             EEE-TTS-EEEE
T ss_pred             EECCcCCceEEe
Confidence            43 444444433

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=95.52  E-value=3.8  Score=45.32  Aligned_cols=117  Identities=13%  Similarity=0.123  Sum_probs=68.2

Q ss_pred             cEEEEEECCCCCEEEEE-eCC----CcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCC---------
Q 004468           52 CVNAISWNSKGSLLISG-SDD----THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA---------  117 (751)
Q Consensus        52 ~V~~l~~s~dg~~LaSg-s~D----g~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg---------  117 (751)
                      .+..+.+||+|++||-+ +..    .+|+|.|+.+++.+......  .....+.|.++  ++.|+-...|.         
T Consensus       125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~--~~~~~~~W~~d--~~~~~y~~~~~~~~~~~~~~  200 (414)
T PF02897_consen  125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN--PKFSSVSWSDD--GKGFFYTRFDEDQRTSDSGY  200 (414)
T ss_dssp             EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE--EESEEEEECTT--SSEEEEEECSTTTSS-CCGC
T ss_pred             EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc--cccceEEEeCC--CCEEEEEEeCcccccccCCC
Confidence            34467899999988854 333    44999999999776543121  11223999999  55555444332         


Q ss_pred             --cEEEEECCCCCCCCCCCCCCCCceeecccCCc--eeEEEEecCCCCEEEEEeCCCc---EEEEecCCC
Q 004468          118 --EVRLFNLSRFSGRGLDDNAITPSALYQCHTRR--VKKLAVEVGNPHVVWSASEDGT---LRQHDFRQG  180 (751)
Q Consensus       118 --~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~--V~~l~~sp~~~~~l~s~s~Dg~---I~iwDlr~~  180 (751)
                        .|+.|.+.+...        +....+......  ...+..++++..+++......+   +.+.|+...
T Consensus       201 ~~~v~~~~~gt~~~--------~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~  262 (414)
T PF02897_consen  201 PRQVYRHKLGTPQS--------EDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDG  262 (414)
T ss_dssp             CEEEEEEETTS-GG--------G-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCT
T ss_pred             CcEEEEEECCCChH--------hCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecccc
Confidence              378888876432        112344443333  4577888855445555554444   666676654

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=95.51  E-value=0.057  Score=59.67  Aligned_cols=77  Identities=18%  Similarity=0.257  Sum_probs=65.7

Q ss_pred             CcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCcee-EEEEecCCCCEEEEEeCCCc
Q 004468           93 SANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVK-KLAVEVGNPHVVWSASEDGT  171 (751)
Q Consensus        93 ~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~-~l~~sp~~~~~l~s~s~Dg~  171 (751)
                      ...|--+.|+|.  -.+||.+..+|.|.++.+.-           ..+.++.-|...|+ +++|.| +|++++.|=.||+
T Consensus        20 ~~~i~~~ewnP~--~dLiA~~t~~gelli~R~n~-----------qRlwtip~p~~~v~~sL~W~~-DGkllaVg~kdG~   85 (665)
T KOG4640|consen   20 PINIKRIEWNPK--MDLIATRTEKGELLIHRLNW-----------QRLWTIPIPGENVTASLCWRP-DGKLLAVGFKDGT   85 (665)
T ss_pred             ccceEEEEEcCc--cchhheeccCCcEEEEEecc-----------ceeEeccCCCCccceeeeecC-CCCEEEEEecCCe
Confidence            356788999999  58999999999999988873           44777777777787 999999 6899999999999


Q ss_pred             EEEEecCCCCCC
Q 004468          172 LRQHDFRQGSSC  183 (751)
Q Consensus       172 I~iwDlr~~~~~  183 (751)
                      |++.|..++..+
T Consensus        86 I~L~Dve~~~~l   97 (665)
T KOG4640|consen   86 IRLHDVEKGGRL   97 (665)
T ss_pred             EEEEEccCCCce
Confidence            999999998744

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=95.50  E-value=0.065  Score=62.84  Aligned_cols=95  Identities=20%  Similarity=0.099  Sum_probs=80.4

Q ss_pred             hHHHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcc
Q 004468          363 CRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFR  442 (751)
Q Consensus       363 ~~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~  442 (751)
                      ...++..++..+..|+ |..||..|..+|...+.       ...|.|++.++++.+   +...|+.+|.+++.++|.+.+
T Consensus       127 a~~~k~~G~~~~~~~~-~~~Ai~~y~~al~~~p~-------~~~~~n~a~~~~~l~---~~~~Ai~~~~~al~l~p~~~~  195 (615)
T TIGR00990       127 AAKLKEKGNKAYRNKD-FNKAIKLYSKAIECKPD-------PVYYSNRAACHNALG---DWEKVVEDTTAALELDPDYSK  195 (615)
T ss_pred             HHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCc-------hHHHHHHHHHHHHhC---CHHHHHHHHHHHHHcCCCCHH
Confidence            4567778888888888 99999999999986543       257899999998763   456799999999999999999


Q ss_pred             hHHHHHHHHHHhcchHHHHHHHHHhc
Q 004468          443 AHLYMSEALEQLCKYKEALDFAIAAQ  468 (751)
Q Consensus       443 a~~~~~~~l~~l~~~~~a~~~~~~~~  468 (751)
                      ++++++.++..++++.+|+..+..+.
T Consensus       196 a~~~~a~a~~~lg~~~eA~~~~~~~~  221 (615)
T TIGR00990       196 ALNRRANAYDGLGKYADALLDLTASC  221 (615)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            99999999999999999997665443

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=95.44  E-value=1.1  Score=49.77  Aligned_cols=221  Identities=11%  Similarity=0.120  Sum_probs=103.7

Q ss_pred             EEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEE-
Q 004468           44 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLF-  122 (751)
Q Consensus        44 ~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vw-  122 (751)
                      +.+-...-....|.++|+|+.++.+ .||...|+.....+...      .+.-..+.|.+.  + .+|+-...++|.|+ 
T Consensus        26 k~lg~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~k~------~G~g~~~vw~~~--n-~yAv~~~~~~I~I~k   95 (443)
T PF04053_consen   26 KELGSCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRNKA------FGSGLSFVWSSR--N-RYAVLESSSTIKIYK   95 (443)
T ss_dssp             EEEEE-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEEE------EEE-SEEEE-TS--S-EEEEE-TTS-EEEEE
T ss_pred             ccCCCCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCcccc------cCceeEEEEecC--c-cEEEEECCCeEEEEE
Confidence            3444445557899999999999885 56788888754433322      233456788885  3 46666668899996 


Q ss_pred             ECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEeccc
Q 004468          123 NLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRC  202 (751)
Q Consensus       123 d~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~  202 (751)
                      ++...           ....+.- ...+..|-  +  |.+|...+.+ .|.+||+.+++..              ..   
T Consensus        96 n~~~~-----------~~k~i~~-~~~~~~If--~--G~LL~~~~~~-~i~~yDw~~~~~i--------------~~---  141 (443)
T PF04053_consen   96 NFKNE-----------VVKSIKL-PFSVEKIF--G--GNLLGVKSSD-FICFYDWETGKLI--------------RR---  141 (443)
T ss_dssp             TTEE------------TT------SS-EEEEE-----SSSEEEEETT-EEEEE-TTT--EE--------------EE---
T ss_pred             cCccc-----------cceEEcC-CcccceEE--c--CcEEEEECCC-CEEEEEhhHccee--------------eE---
Confidence            44321           1122221 12344442  2  5666666554 8999999987632              10   


Q ss_pred             CceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccce
Q 004468          203 GAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHL  282 (751)
Q Consensus       203 ~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v  282 (751)
                           +     ....|+.+.|+++ +.+++..+.+ .+.|++........     .........|...+..     ...|
T Consensus       142 -----i-----~v~~vk~V~Ws~~-g~~val~t~~-~i~il~~~~~~~~~-----~~~~g~e~~f~~~~E~-----~~~I  199 (443)
T PF04053_consen  142 -----I-----DVSAVKYVIWSDD-GELVALVTKD-SIYILKYNLEAVAA-----IPEEGVEDAFELIHEI-----SERI  199 (443)
T ss_dssp             -----E-----SS-E-EEEEE-TT-SSEEEEE-S--SEEEEEE-HHHHHH-----BTTTB-GGGEEEEEEE------S--
T ss_pred             -----E-----ecCCCcEEEEECC-CCEEEEEeCC-eEEEEEecchhccc-----ccccCchhceEEEEEe-----ccee
Confidence                 1     1224789999995 6788777655 66776654220000     0000001112211110     2257


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEECCCCCcceeeeecCCCceeEEeCCCCCCc
Q 004468          283 THVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGL  336 (751)
Q Consensus       283 t~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp~~~~~  336 (751)
                      .+..|..|  .++-.+.. +|+.  +-++ ..........+...+.+.|..+.+
T Consensus       200 kSg~W~~d--~fiYtT~~-~lkY--l~~G-e~~~i~~ld~~~yllgy~~~~~~l  247 (443)
T PF04053_consen  200 KSGCWVED--CFIYTTSN-HLKY--LVNG-ETGIIAHLDKPLYLLGYLPKENRL  247 (443)
T ss_dssp             SEEEEETT--EEEEE-TT-EEEE--EETT-EEEEEEE-SS--EEEEEETTTTEE
T ss_pred             EEEEEEcC--EEEEEcCC-eEEE--EEcC-CcceEEEcCCceEEEEEEccCCEE
Confidence            88888877  33333333 6666  3332 233333345566666666644433

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=95.43  E-value=0.041  Score=39.91  Aligned_cols=34  Identities=21%  Similarity=0.414  Sum_probs=30.0

Q ss_pred             CCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeE
Q 004468           50 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKL   84 (751)
Q Consensus        50 ~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~   84 (751)
                      ...|.+++|+|...+||.|..||.|.|+.+ +++.
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr   44 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR   44 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence            457999999999999999999999999998 4544

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=95.27  E-value=0.88  Score=50.24  Aligned_cols=121  Identities=12%  Similarity=0.125  Sum_probs=71.1

Q ss_pred             EEeccCCCcEEEEEECCCCCEEEEEe---CC-CcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcE
Q 004468           44 RELEGHQGCVNAISWNSKGSLLISGS---DD-THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEV  119 (751)
Q Consensus        44 ~~L~gH~~~V~~l~~s~dg~~LaSgs---~D-g~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V  119 (751)
                      +.+..-...+..=+|+|+++.++--+   .. ..+.++++.+++....+  ...+.-..-+|+|+. ..++++...|+..
T Consensus       186 ~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~--~~~g~~~~P~fspDG-~~l~f~~~rdg~~  262 (425)
T COG0823         186 QKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVIL--NFNGNNGAPAFSPDG-SKLAFSSSRDGSP  262 (425)
T ss_pred             eEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceee--ccCCccCCccCCCCC-CEEEEEECCCCCc
Confidence            34444455677788999998766542   22 46999999887665544  134555677899993 3444567778776


Q ss_pred             EEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEe
Q 004468          120 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHD  176 (751)
Q Consensus       120 ~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwD  176 (751)
                      .||-+....+.         +..+..-.+.-..=.|+|++..++.+.+..|.-.||-
T Consensus       263 ~iy~~dl~~~~---------~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~  310 (425)
T COG0823         263 DIYLMDLDGKN---------LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYL  310 (425)
T ss_pred             cEEEEcCCCCc---------ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEE
Confidence            55544432211         1122222222235578996666666666666654443

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=95.26  E-value=2.1  Score=43.48  Aligned_cols=183  Identities=15%  Similarity=0.122  Sum_probs=87.9

Q ss_pred             ccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeeccc-CCceeEEEEecCCCCEEEEEeC
Q 004468           90 TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCH-TRRVKKLAVEVGNPHVVWSASE  168 (751)
Q Consensus        90 ~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~l~~sp~~~~~l~s~s~  168 (751)
                      .+-...+..++|.|++ +.++++....+.|...+..   +        +.+..+.-. .+-.-.|++.. ++.++++.-.
T Consensus        18 ~g~~~e~SGLTy~pd~-~tLfaV~d~~~~i~els~~---G--------~vlr~i~l~g~~D~EgI~y~g-~~~~vl~~Er   84 (248)
T PF06977_consen   18 PGILDELSGLTYNPDT-GTLFAVQDEPGEIYELSLD---G--------KVLRRIPLDGFGDYEGITYLG-NGRYVLSEER   84 (248)
T ss_dssp             TT--S-EEEEEEETTT-TEEEEEETTTTEEEEEETT-------------EEEEEE-SS-SSEEEEEE-S-TTEEEEEETT
T ss_pred             CCccCCccccEEcCCC-CeEEEEECCCCEEEEEcCC---C--------CEEEEEeCCCCCCceeEEEEC-CCEEEEEEcC
Confidence            5566679999999985 5677777778888777764   2        223333222 23456777764 4455554445


Q ss_pred             CCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCC
Q 004468          169 DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRML  248 (751)
Q Consensus       169 Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~  248 (751)
                      ++.+.++++.......       .. ..+..      ..+.........+-.++|+|.. +.|+++-...-.+||.++..
T Consensus        85 ~~~L~~~~~~~~~~~~-------~~-~~~~~------~~l~~~~~~N~G~EGla~D~~~-~~L~v~kE~~P~~l~~~~~~  149 (248)
T PF06977_consen   85 DQRLYIFTIDDDTTSL-------DR-ADVQK------ISLGFPNKGNKGFEGLAYDPKT-NRLFVAKERKPKRLYEVNGF  149 (248)
T ss_dssp             TTEEEEEEE----TT---------E-EEEEE------EE---S---SS--EEEEEETTT-TEEEEEEESSSEEEEEEEST
T ss_pred             CCcEEEEEEecccccc-------ch-hhceE------EecccccCCCcceEEEEEcCCC-CEEEEEeCCCChhhEEEccc
Confidence            8999999986543210       00 00000      0111122244568899999964 44445556666677776542


Q ss_pred             CCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCC-EEEEEeCCCcEEEEECCC
Q 004468          249 PPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGE-EVLLSYSGEHVYLMDVNH  310 (751)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~-~Ll~~s~d~~I~lwdl~~  310 (751)
                      ....          ................-..+.+++++|... .++.+..+..|..+|...
T Consensus       150 ~~~~----------~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G  202 (248)
T PF06977_consen  150 PGGF----------DLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQG  202 (248)
T ss_dssp             T-SS------------EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT-
T ss_pred             cCcc----------ceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEECCCC
Confidence            1000          000000000000000111378899999654 555566688898898444

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=95.18  E-value=0.35  Score=43.92  Aligned_cols=111  Identities=16%  Similarity=-0.007  Sum_probs=84.1

Q ss_pred             cCcchhHHHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCC
Q 004468          358 TGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRID  437 (751)
Q Consensus       358 ~~~~~~~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~  437 (751)
                      ..+.....+...+...+..++ +..|+..+..++...+..      ...+.+.+..+...+.   .-.|+.....++.++
T Consensus        12 ~~p~~~~~~~~~a~~~~~~~~-~~~A~~~~~~~~~~~p~~------~~~~~~la~~~~~~~~---~~~A~~~~~~~~~~~   81 (135)
T TIGR02552        12 LDSEQLEQIYALAYNLYQQGR-YDEALKLFQLLAAYDPYN------SRYWLGLAACCQMLKE---YEEAIDAYALAAALD   81 (135)
T ss_pred             CChhhHHHHHHHHHHHHHccc-HHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHHHH---HHHHHHHHHHHHhcC
Confidence            344444555666666777777 888888888888766543      3455666666665533   345677778889999


Q ss_pred             CCCcchHHHHHHHHHHhcchHHHHHHHHHhcccCCCChhhh
Q 004468          438 SSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMA  478 (751)
Q Consensus       438 ~~~~~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~~~~  478 (751)
                      |.....++.++.++...+++.+|+..++......|......
T Consensus        82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  122 (135)
T TIGR02552        82 PDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYS  122 (135)
T ss_pred             CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence            99999999999999999999999999999998888766543

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.97  E-value=1.1  Score=48.86  Aligned_cols=203  Identities=14%  Similarity=0.180  Sum_probs=115.8

Q ss_pred             EEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEE-----EEEECCCcEEEEECCCCCCCCCCCCCCCC
Q 004468           65 LISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELV-----VSGAGDAEVRLFNLSRFSGRGLDDNAITP  139 (751)
Q Consensus        65 LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l-----~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~  139 (751)
                      |.++..-..|.--|++.|+.+... .-|.. |.-+.+.|+..+..+     +.|=.|..|.-||++....        ..
T Consensus       349 l~~~~~~~~l~klDIE~GKIVeEW-k~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~--------~k  418 (644)
T KOG2395|consen  349 LMDGGEQDKLYKLDIERGKIVEEW-KFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGK--------NK  418 (644)
T ss_pred             eeCCCCcCcceeeecccceeeeEe-eccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCc--------ce
Confidence            445555566777789999988887 44444 888888887543333     2344678899999985321        11


Q ss_pred             ceeeccc----CCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCc
Q 004468          140 SALYQCH----TRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQT  215 (751)
Q Consensus       140 ~~~~~~h----~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  215 (751)
                      +..-++|    ...-.|.+..  +.-+++.||.+|.||+||- .+...                        ....|+..
T Consensus       419 l~~~q~kqy~~k~nFsc~aTT--~sG~IvvgS~~GdIRLYdr-i~~~A------------------------KTAlPgLG  471 (644)
T KOG2395|consen  419 LAVVQSKQYSTKNNFSCFATT--ESGYIVVGSLKGDIRLYDR-IGRRA------------------------KTALPGLG  471 (644)
T ss_pred             eeeeeccccccccccceeeec--CCceEEEeecCCcEEeehh-hhhhh------------------------hhcccccC
Confidence            2222222    1223444443  4457889999999999995 33211                        22345566


Q ss_pred             cceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCC-----Ccc--ccCCCCCCCCccccccccccccCCccccceEE-EEE
Q 004468          216 LSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP-----PLT--SCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTH-VTF  287 (751)
Q Consensus       216 ~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~-----~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~-v~f  287 (751)
                      .+|+.+..+.+ |.+|+.. .+.++.+.++.-..     ++.  .+.....|.+-...+.|.|+......   +.. ..|
T Consensus       472 ~~I~hVdvtad-GKwil~T-c~tyLlLi~t~~kdg~~~~~~Gf~k~~~~k~p~pk~LkL~PeHlA~~~~~---~k~~a~F  546 (644)
T KOG2395|consen  472 DAIKHVDVTAD-GKWILAT-CKTYLLLIDTLIKDGDYAGKTGFEKFMGNKIPKPKRLKLRPEHLAGIDNE---FKGTAKF  546 (644)
T ss_pred             CceeeEEeecc-CcEEEEe-cccEEEEEEEecccCCccccccccccccccCCCceeeecCHHHhhhhhhh---ccCceeE
Confidence            78999999985 6666544 46677777765311     111  11112223333445556666542211   111 344


Q ss_pred             c------CCCCEEEEEeCCCcEEEEECCC
Q 004468          288 S------PNGEEVLLSYSGEHVYLMDVNH  310 (751)
Q Consensus       288 s------pdg~~Ll~~s~d~~I~lwdl~~  310 (751)
                      +      ...+. ++++....+..|++..
T Consensus       547 s~nTg~g~qE~t-IVtS~G~f~V~WnLd~  574 (644)
T KOG2395|consen  547 SFNTGIGAQERT-IVTSTGPFSVSWNLDR  574 (644)
T ss_pred             EEeccCCcceee-EEEeecceEEEEEhhH
Confidence            4      12233 4445566888899876

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=94.89  E-value=0.48  Score=46.60  Aligned_cols=111  Identities=11%  Similarity=0.025  Sum_probs=82.9

Q ss_pred             cCcchhHHHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHh-hcccccchhhhHHHhhHHHhcC
Q 004468          358 TGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALL-LKRKWKNDAQMAIRDCYNARRI  436 (751)
Q Consensus       358 ~~~~~~~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~-~~r~w~~d~y~al~d~~~a~~~  436 (751)
                      ..|+........+......+. +..|+..|..++...++.      ...+.+.|.++ ...+-. +.-.|..-..+++++
T Consensus        68 ~~P~~~~~w~~Lg~~~~~~g~-~~~A~~a~~~Al~l~P~~------~~~~~~lA~aL~~~~g~~-~~~~A~~~l~~al~~  139 (198)
T PRK10370         68 ANPQNSEQWALLGEYYLWRND-YDNALLAYRQALQLRGEN------AELYAALATVLYYQAGQH-MTPQTREMIDKALAL  139 (198)
T ss_pred             HCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHh
Confidence            344555555555666666677 889999999999877665      45667777654 332211 123466667789999


Q ss_pred             CCCCcchHHHHHHHHHHhcchHHHHHHHHHhcccCCCChh
Q 004468          437 DSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSV  476 (751)
Q Consensus       437 ~~~~~~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~~  476 (751)
                      +|++..+++.++.+++.+|++.+|..+.+.+....|...+
T Consensus       140 dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~  179 (198)
T PRK10370        140 DANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVN  179 (198)
T ss_pred             CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence            9999999999999999999999999999998888887554

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=94.64  E-value=1.2  Score=49.07  Aligned_cols=195  Identities=13%  Similarity=0.146  Sum_probs=103.2

Q ss_pred             CeEEEEecccCCcceEEEEEecCCCCcEEEEE---ECC-CcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEec
Q 004468           82 RKLLHSIETGHSANVFCTKFVPETSDELVVSG---AGD-AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEV  157 (751)
Q Consensus        82 ~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sg---s~D-g~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp  157 (751)
                      +.....+ ..-...+..-+|+|+  ++.++--   ... ..+.++++..+..        ..+..+.++..   .-+|+|
T Consensus       182 g~~~~~l-~~~~~~~~~p~ws~~--~~~~~y~~f~~~~~~~i~~~~l~~g~~--------~~i~~~~g~~~---~P~fsp  247 (425)
T COG0823         182 GYNQQKL-TDSGSLILTPAWSPD--GKKLAYVSFELGGCPRIYYLDLNTGKR--------PVILNFNGNNG---APAFSP  247 (425)
T ss_pred             CcceeEe-cccCcceeccccCcC--CCceEEEEEecCCCceEEEEeccCCcc--------ceeeccCCccC---CccCCC
Confidence            4444444 334456777889999  4544322   122 4589999987543        22334444443   468999


Q ss_pred             CCCCEEEEEeCCCcEEE--EecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEe
Q 004468          158 GNPHVVWSASEDGTLRQ--HDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGG  235 (751)
Q Consensus       158 ~~~~~l~s~s~Dg~I~i--wDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs  235 (751)
                      ++.+++++...||...+  +|+.......               +..        .   ...-..=.|+|++..++.+.+
T Consensus       248 DG~~l~f~~~rdg~~~iy~~dl~~~~~~~---------------Lt~--------~---~gi~~~Ps~spdG~~ivf~Sd  301 (425)
T COG0823         248 DGSKLAFSSSRDGSPDIYLMDLDGKNLPR---------------LTN--------G---FGINTSPSWSPDGSKIVFTSD  301 (425)
T ss_pred             CCCEEEEEECCCCCccEEEEcCCCCccee---------------ccc--------C---CccccCccCCCCCCEEEEEeC
Confidence            87778888888887554  5665544110               000        0   011113468996555555655


Q ss_pred             CCCeEEEE--eCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeC-CCc--EEEEECCC
Q 004468          236 SDAFARLY--DRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GEH--VYLMDVNH  310 (751)
Q Consensus       236 ~D~~Iriw--D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~-d~~--I~lwdl~~  310 (751)
                      ..|.-.||  |+.....              +....     .+..   -..-.|||||++|+..+. +|.  |.+.|+.+
T Consensus       302 r~G~p~I~~~~~~g~~~--------------~riT~-----~~~~---~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~  359 (425)
T COG0823         302 RGGRPQIYLYDLEGSQV--------------TRLTF-----SGGG---NSNPVWSPDGDKIVFESSSGGQWDIDKNDLAS  359 (425)
T ss_pred             CCCCcceEEECCCCCce--------------eEeec-----cCCC---CcCccCCCCCCEEEEEeccCCceeeEEeccCC
Confidence            56654444  4443221              00000     0111   125679999999887664 344  77777777


Q ss_pred             CCcceeeeecCCCceeEEeCCCCCCcccC
Q 004468          311 AGGRAMRYTVGDASKIMSFTPTLNGLELQ  339 (751)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~sp~~~~~~~~  339 (751)
                      +.. ..............+.|+...+.+.
T Consensus       360 ~~~-~~~lt~~~~~e~ps~~~ng~~i~~~  387 (425)
T COG0823         360 GGK-IRILTSTYLNESPSWAPNGRMIMFS  387 (425)
T ss_pred             CCc-EEEccccccCCCCCcCCCCceEEEe
Confidence            543 2222223333344455554444433

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=94.59  E-value=7.7  Score=42.42  Aligned_cols=231  Identities=13%  Similarity=0.131  Sum_probs=130.0

Q ss_pred             cEEEEEECCCCCEEEEEe-CCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCC
Q 004468           52 CVNAISWNSKGSLLISGS-DDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGR  130 (751)
Q Consensus        52 ~V~~l~~s~dg~~LaSgs-~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~  130 (751)
                      ....+...++|..+.... ....+.+-+.......... ..-...-..++.++.. .+.+++...+..|.+.|....   
T Consensus        32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~-~~g~~~p~~i~v~~~~-~~vyv~~~~~~~v~vid~~~~---  106 (381)
T COG3391          32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSL-SVGGVYPAGVAVNPAG-NKVYVTTGDSNTVSVIDTATN---  106 (381)
T ss_pred             CCceeEEcCccCEEEEEeecCceeeecccccceeeeec-cCCCccccceeeCCCC-CeEEEecCCCCeEEEEcCccc---
Confidence            455677888885333332 2224555555422222222 1111344567778773 346667777899999996643   


Q ss_pred             CCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEe--CCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecc
Q 004468          131 GLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSAS--EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSL  208 (751)
Q Consensus       131 ~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s--~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  208 (751)
                             ....... -......++++|+++.+.++-.  .++++.+.|..+.+...             . ...      
T Consensus       107 -------~~~~~~~-vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~-------------~-~~v------  158 (381)
T COG3391         107 -------TVLGSIP-VGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTA-------------T-IPV------  158 (381)
T ss_pred             -------ceeeEee-eccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEE-------------E-Eec------
Confidence                   1122221 1225678999997766666666  46888888877765320             0 000      


Q ss_pred             cCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEc
Q 004468          209 ADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFS  288 (751)
Q Consensus       209 ~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fs  288 (751)
                           ...+ ..++++|++...+++-..++.|.+.|........ -.             +......   ......+.++
T Consensus       159 -----G~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~-------------~~~~~~~---~~~P~~i~v~  215 (381)
T COG3391         159 -----GNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GS-------------VGSLVGV---GTGPAGIAVD  215 (381)
T ss_pred             -----CCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-cc-------------ccccccc---CCCCceEEEC
Confidence                 1122 7889999654455555689999999976543321 00             0000000   1124678999


Q ss_pred             CCCCEEEEEeCC---CcEEEEECCCCCcceeeeecCC-CceeEEeCCCCCCccc
Q 004468          289 PNGEEVLLSYSG---EHVYLMDVNHAGGRAMRYTVGD-ASKIMSFTPTLNGLEL  338 (751)
Q Consensus       289 pdg~~Ll~~s~d---~~I~lwdl~~~~~~~~~~~~~~-~~~~~~~sp~~~~~~~  338 (751)
                      |+|+++.+....   +.+...|..++.........+. ....+.+.|+..-...
T Consensus       216 ~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv  269 (381)
T COG3391         216 PDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYV  269 (381)
T ss_pred             CCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEE
Confidence            999977766553   5899999888543333222222 3455666666554443

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=94.40  E-value=1.7  Score=50.12  Aligned_cols=109  Identities=13%  Similarity=0.109  Sum_probs=66.0

Q ss_pred             CCCCCEEEEEeCCC------cEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECC------CcEEEEECCC
Q 004468           59 NSKGSLLISGSDDT------HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD------AEVRLFNLSR  126 (751)
Q Consensus        59 s~dg~~LaSgs~Dg------~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~D------g~V~vwd~~~  126 (751)
                      +..+.+++.||.++      .+..+|..++.........+...-.+++...+   .+.++|+.|      .++..||...
T Consensus       282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~---~lYv~GG~~~~~~~l~~ve~YD~~~  358 (571)
T KOG4441|consen  282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNG---KLYVVGGYDSGSDRLSSVERYDPRT  358 (571)
T ss_pred             CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEECC---EEEEEccccCCCcccceEEEecCCC
Confidence            34567888888774      57788988775444332334555667777754   788899988      3566777775


Q ss_pred             CCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCc-----EEEEecCCCC
Q 004468          127 FSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGT-----LRQHDFRQGS  181 (751)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~-----I~iwDlr~~~  181 (751)
                      .+-        ..+..+...........+   ++.+.+.||.||.     |-.||.++.+
T Consensus       359 ~~W--------~~~a~M~~~R~~~~v~~l---~g~iYavGG~dg~~~l~svE~YDp~~~~  407 (571)
T KOG4441|consen  359 NQW--------TPVAPMNTKRSDFGVAVL---DGKLYAVGGFDGEKSLNSVECYDPVTNK  407 (571)
T ss_pred             Cce--------eccCCccCccccceeEEE---CCEEEEEeccccccccccEEEecCCCCc
Confidence            432        122222222222222222   6789999999974     5566666543

>PRK02888 nitrous-oxide reductase; Validated

Probab=94.36  E-value=1.5  Score=49.94  Aligned_cols=84  Identities=14%  Similarity=0.173  Sum_probs=54.2

Q ss_pred             ceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEE
Q 004468          217 SLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLL  296 (751)
Q Consensus       217 ~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~  296 (751)
                      ....++++|++...++++..+.+|.|+|+.+.+..-.  ....+..++......        +......+|+++|+...+
T Consensus       322 sPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~--~~~~~~~~vvaevev--------GlGPLHTaFDg~G~ayts  391 (635)
T PRK02888        322 NPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFD--GKIKPRDAVVAEPEL--------GLGPLHTAFDGRGNAYTT  391 (635)
T ss_pred             CccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhh--ccCCccceEEEeecc--------CCCcceEEECCCCCEEEe
Confidence            4567899997555566666799999999998653211  111111122111111        112456789999987777


Q ss_pred             EeCCCcEEEEECCC
Q 004468          297 SYSGEHVYLMDVNH  310 (751)
Q Consensus       297 ~s~d~~I~lwdl~~  310 (751)
                      -.-|.+|-.||+..
T Consensus       392 lf~dsqv~kwn~~~  405 (635)
T PRK02888        392 LFLDSQIVKWNIEA  405 (635)
T ss_pred             EeecceeEEEehHH
Confidence            77899999999987

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=94.31  E-value=0.93  Score=50.28  Aligned_cols=143  Identities=18%  Similarity=0.192  Sum_probs=76.8

Q ss_pred             CCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCc
Q 004468           92 HSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGT  171 (751)
Q Consensus        92 h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~  171 (751)
                      ..-....+.++|+  |++++. +.||.-.|+....             ...  ...+.-...+|.+ . ..+++-...++
T Consensus        31 ~~~~p~~ls~npn--gr~v~V-~g~geY~iyt~~~-------------~r~--k~~G~g~~~vw~~-~-n~yAv~~~~~~   90 (443)
T PF04053_consen   31 CEIYPQSLSHNPN--GRFVLV-CGDGEYEIYTALA-------------WRN--KAFGSGLSFVWSS-R-NRYAVLESSST   90 (443)
T ss_dssp             -SS--SEEEE-TT--SSEEEE-EETTEEEEEETTT-------------TEE--EEEEE-SEEEE-T-S-SEEEEE-TTS-
T ss_pred             CCcCCeeEEECCC--CCEEEE-EcCCEEEEEEccC-------------Ccc--cccCceeEEEEec-C-ccEEEEECCCe
Confidence            3445789999998  788888 4577777777332             111  1234456788987 3 45667777889


Q ss_pred             EEEE-ecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCC
Q 004468          172 LRQH-DFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPP  250 (751)
Q Consensus       172 I~iw-Dlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~  250 (751)
                      |.++ ++.... ...                      +      ..+...-.+.+  |.+|.+.+.+ .|.+||..+.+.
T Consensus        91 I~I~kn~~~~~-~k~----------------------i------~~~~~~~~If~--G~LL~~~~~~-~i~~yDw~~~~~  138 (443)
T PF04053_consen   91 IKIYKNFKNEV-VKS----------------------I------KLPFSVEKIFG--GNLLGVKSSD-FICFYDWETGKL  138 (443)
T ss_dssp             EEEEETTEE-T-T---------------------------------SS-EEEEE---SSSEEEEETT-EEEEE-TTT--E
T ss_pred             EEEEEcCcccc-ceE----------------------E------cCCcccceEEc--CcEEEEECCC-CEEEEEhhHcce
Confidence            9996 442221 000                      0      00111112222  5667766655 899999998776


Q ss_pred             ccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004468          251 LTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (751)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~  310 (751)
                      +..+..                      . +|..|.|+++|.+++..+.+ .++|++.+.
T Consensus       139 i~~i~v----------------------~-~vk~V~Ws~~g~~val~t~~-~i~il~~~~  174 (443)
T PF04053_consen  139 IRRIDV----------------------S-AVKYVIWSDDGELVALVTKD-SIYILKYNL  174 (443)
T ss_dssp             EEEESS------------------------E-EEEEE-TTSSEEEEE-S--SEEEEEE-H
T ss_pred             eeEEec----------------------C-CCcEEEEECCCCEEEEEeCC-eEEEEEecc
Confidence            544321                      1 37899999999998888754 788877555

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=94.28  E-value=0.13  Score=50.17  Aligned_cols=107  Identities=16%  Similarity=0.156  Sum_probs=60.6

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCce
Q 004468           62 GSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSA  141 (751)
Q Consensus        62 g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~  141 (751)
                      +..|+.|+.||.|.+|+.............-...|.+. +.....+.+..+++.|+.|+.|++...          +.+.
T Consensus        70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~-Ip~~~~~~~~c~~~~dg~ir~~n~~p~----------k~~g  138 (238)
T KOG2444|consen   70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLG-IPNGRDSSLGCVGAQDGRIRACNIKPN----------KVLG  138 (238)
T ss_pred             CceEEeecccceEEEecCCccchHHHhhhcccccceec-cccccccceeEEeccCCceeeeccccC----------ceee
Confidence            45789999999999999762211111111112222222 222211458899999999999999853          2234


Q ss_pred             eecccC-CceeEEEEecCCCCEEEEE--eCCCcEEEEecCCC
Q 004468          142 LYQCHT-RRVKKLAVEVGNPHVVWSA--SEDGTLRQHDFRQG  180 (751)
Q Consensus       142 ~~~~h~-~~V~~l~~sp~~~~~l~s~--s~Dg~I~iwDlr~~  180 (751)
                      ....|+ ..+..+..+. ...+++++  |.|..++.|++..-
T Consensus       139 ~~g~h~~~~~e~~ivv~-sd~~i~~a~~S~d~~~k~W~ve~~  179 (238)
T KOG2444|consen  139 YVGQHNFESGEELIVVG-SDEFLKIADTSHDRVLKKWNVEKI  179 (238)
T ss_pred             eeccccCCCcceeEEec-CCceEEeeccccchhhhhcchhhh
Confidence            444555 3444444443 33455555  56666666666543

>PHA02713 hypothetical protein; Provisional

Probab=94.11  E-value=1.8  Score=49.91  Aligned_cols=64  Identities=8%  Similarity=0.195  Sum_probs=33.9

Q ss_pred             CCCEEEEEeCC------CcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCC-----cEEEEECCCC
Q 004468           61 KGSLLISGSDD------THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA-----EVRLFNLSRF  127 (751)
Q Consensus        61 dg~~LaSgs~D------g~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg-----~V~vwd~~~~  127 (751)
                      ++.+.+.||.+      ..+..||+.+......-.......-.+++.. +  |.+.+.||.++     +|..||..+.
T Consensus       303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~-~--g~IYviGG~~~~~~~~sve~Ydp~~~  377 (557)
T PHA02713        303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVI-D--DTIYAIGGQNGTNVERTIECYTMGDD  377 (557)
T ss_pred             CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEE-C--CEEEEECCcCCCCCCceEEEEECCCC
Confidence            56677777753      2366778776543211100111111223322 2  57778887764     4788998753

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=94.02  E-value=6.1  Score=44.80  Aligned_cols=63  Identities=10%  Similarity=0.086  Sum_probs=42.0

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCeEEEEecccCC-----cceEE--EEEecCCCCcEEEEEECCCcEEEEECCCC
Q 004468           62 GSLLISGSDDTHINVWSYSSRKLLHSIETGHS-----ANVFC--TKFVPETSDELVVSGAGDAEVRLFNLSRF  127 (751)
Q Consensus        62 g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~-----~~V~~--v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~  127 (751)
                      +..+..++.++.|.-.|..+|+.+..+.....     ..+..  +... +  +..++.++.++.|.-+|..++
T Consensus        61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~--~~~V~v~~~~g~v~AlD~~TG  130 (488)
T cd00216          61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-D--PRKVFFGTFDGRLVALDAETG  130 (488)
T ss_pred             CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-c--CCeEEEecCCCeEEEEECCCC
Confidence            44566777889999999999998877633221     00110  1111 1  257888888999999999875

The alignment model contains an 8-bladed beta-propeller.

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.93  E-value=5  Score=40.75  Aligned_cols=223  Identities=15%  Similarity=0.215  Sum_probs=123.0

Q ss_pred             EEEECCCC-CEEEEEeCCCc-EEEEeCCCCeEEEEec-------ccCCcceEEEEEecCCCCcEEEEEECC-----CcEE
Q 004468           55 AISWNSKG-SLLISGSDDTH-INVWSYSSRKLLHSIE-------TGHSANVFCTKFVPETSDELVVSGAGD-----AEVR  120 (751)
Q Consensus        55 ~l~~s~dg-~~LaSgs~Dg~-I~IWd~~~~~~~~~l~-------~~h~~~V~~v~fsp~s~~~~l~sgs~D-----g~V~  120 (751)
                      .|.|+|.. .-++-+-.-|+ ..++|....+.+.++.       -||.      .|+|+  |.+|+..-.|     |.|-
T Consensus        72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHG------vfs~d--G~~LYATEndfd~~rGViG  143 (366)
T COG3490          72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHG------VFSPD--GRLLYATENDFDPNRGVIG  143 (366)
T ss_pred             CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeeccc------ccCCC--CcEEEeecCCCCCCCceEE
Confidence            56777743 34555555555 5678888776655542       2443      48999  8888876554     6799


Q ss_pred             EEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEE-ecCCCCCCCCCCCCCCccceEEEe
Q 004468          121 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQH-DFRQGSSCPPAGSSHQECRNILLD  199 (751)
Q Consensus       121 vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iw-Dlr~~~~~~~~~~~~~~~~~~l~~  199 (751)
                      |||.+..         +..+-.+..|.-....+.|.+ ++.+++.+  .|-|... |...-+    ......+..-++.+
T Consensus       144 vYd~r~~---------fqrvgE~~t~GiGpHev~lm~-DGrtlvva--nGGIethpdfgR~~----lNldsMePSlvlld  207 (366)
T COG3490         144 VYDAREG---------FQRVGEFSTHGIGPHEVTLMA-DGRTLVVA--NGGIETHPDFGRTE----LNLDSMEPSLVLLD  207 (366)
T ss_pred             EEecccc---------cceecccccCCcCcceeEEec-CCcEEEEe--CCceecccccCccc----cchhhcCccEEEEe
Confidence            9999853         244667888888888899999 56766544  3555555 332211    01112233456777


Q ss_pred             cccCceecccCCC--CCccceEEEEEeCCCCcEEEEEeC-CCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCC
Q 004468          200 LRCGAKRSLADPP--KQTLSLKSCDISSTRPHLLLVGGS-DAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHG  276 (751)
Q Consensus       200 ~~~~~~~~~~~~~--~~~~~v~~i~~sp~~~~~l~sgs~-D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  276 (751)
                      ..+|........+  .+...+..++..++ +.. ..|+. .|.     .....++--   ...+...++.+.........
T Consensus       208 ~atG~liekh~Lp~~l~~lSiRHld~g~d-gtv-wfgcQy~G~-----~~d~ppLvg---~~~~g~~l~~~~~pee~~~~  277 (366)
T COG3490         208 AATGNLIEKHTLPASLRQLSIRHLDIGRD-GTV-WFGCQYRGP-----RNDLPPLVG---HFRKGEPLEFLDLPEEQTAA  277 (366)
T ss_pred             ccccchhhhccCchhhhhcceeeeeeCCC-CcE-EEEEEeeCC-----CccCCccee---eccCCCcCcccCCCHHHHHH
Confidence            6777665555555  56677888888884 333 33332 110     011111000   00000011111000000001


Q ss_pred             ccccceEEEEEcCCCCEEEEEeC-CCcEEEEECCCCC
Q 004468          277 RSSLHLTHVTFSPNGEEVLLSYS-GEHVYLMDVNHAG  312 (751)
Q Consensus       277 ~~~~~vt~v~fspdg~~Ll~~s~-d~~I~lwdl~~~~  312 (751)
                      -.+ .|-+|+.+.+...++..+- .+...+||..++.
T Consensus       278 ~an-YigsiA~n~~~glV~lTSP~GN~~vi~da~tG~  313 (366)
T COG3490         278 FAN-YIGSIAANRRDGLVALTSPRGNRAVIWDAATGA  313 (366)
T ss_pred             HHh-hhhheeecccCCeEEEecCCCCeEEEEEcCCCc
Confidence            112 3778888876666665554 6788899999964

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.90  E-value=0.12  Score=60.52  Aligned_cols=88  Identities=28%  Similarity=0.474  Sum_probs=60.2

Q ss_pred             hhccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecC-CCCcEEEEEE
Q 004468           36 LVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPE-TSDELVVSGA  114 (751)
Q Consensus        36 ~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~-s~~~~l~sgs  114 (751)
                      ....+++.+.=..-.++|++++|+.+|++|+.|-.+|.|.+||+.+++.++.+ ..|..++..+-++-- +.+..++++.
T Consensus       116 ~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i-~e~~ap~t~vi~v~~t~~nS~llt~D  194 (1206)
T KOG2079|consen  116 MTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVI-TEHGAPVTGVIFVGRTSQNSKLLTSD  194 (1206)
T ss_pred             hhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeee-eecCCccceEEEEEEeCCCcEEEEcc
Confidence            33344443332334679999999999999999999999999999998888777 555544444433321 1145788877


Q ss_pred             CCCcEEEEECCC
Q 004468          115 GDAEVRLFNLSR  126 (751)
Q Consensus       115 ~Dg~V~vwd~~~  126 (751)
                      .-|.  +|.+.-
T Consensus       195 ~~Gs--f~~lv~  204 (1206)
T KOG2079|consen  195 TGGS--FWKLVF  204 (1206)
T ss_pred             CCCc--eEEEEe
Confidence            7776  666653

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=93.61  E-value=3.1  Score=49.08  Aligned_cols=99  Identities=15%  Similarity=0.161  Sum_probs=61.6

Q ss_pred             CccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCC---
Q 004468          214 QTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPN---  290 (751)
Q Consensus       214 ~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspd---  290 (751)
                      -...|..|.+||. +.+++..|..+.+.+.=.+.......+........|-.......+.. .+....|..+.|+|.   
T Consensus        83 ~~f~v~~i~~n~~-g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~-~~~~~~i~qv~WhP~s~~  160 (717)
T PF10168_consen   83 PLFEVHQISLNPT-GSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFT-SNSSLEIKQVRWHPWSES  160 (717)
T ss_pred             CceeEEEEEECCC-CCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhcc-CCCCceEEEEEEcCCCCC
Confidence            3468999999995 78888888876655544433221222222222223332222222222 233446999999996   


Q ss_pred             CCEEEEEeCCCcEEEEECCCCCcc
Q 004468          291 GEEVLLSYSGEHVYLMDVNHAGGR  314 (751)
Q Consensus       291 g~~Ll~~s~d~~I~lwdl~~~~~~  314 (751)
                      +..|++=++|+.+++||+.....+
T Consensus       161 ~~~l~vLtsdn~lR~y~~~~~~~p  184 (717)
T PF10168_consen  161 DSHLVVLTSDNTLRLYDISDPQHP  184 (717)
T ss_pred             CCeEEEEecCCEEEEEecCCCCCC
Confidence            589999999999999999875433

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=93.48  E-value=5.1  Score=42.59  Aligned_cols=123  Identities=18%  Similarity=0.220  Sum_probs=78.1

Q ss_pred             cccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCe-EEEEecccCCcceEEEEEecCCCCcEEEEEECCC
Q 004468           39 RLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK-LLHSIETGHSANVFCTKFVPETSDELVVSGAGDA  117 (751)
Q Consensus        39 ~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~-~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg  117 (751)
                      +++.++... ..++|++|+-- .|. |+.|.. +.|.+|++...+ ....-.......|.++...    +++|+.|..-.
T Consensus        78 ~l~~i~~~~-~~g~V~ai~~~-~~~-lv~~~g-~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~----~~~I~vgD~~~  149 (321)
T PF03178_consen   78 KLKLIHSTE-VKGPVTAICSF-NGR-LVVAVG-NKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF----KNYILVGDAMK  149 (321)
T ss_dssp             EEEEEEEEE-ESS-EEEEEEE-TTE-EEEEET-TEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE----TTEEEEEESSS
T ss_pred             EEEEEEEEe-ecCcceEhhhh-CCE-EEEeec-CEEEEEEccCcccchhhheecceEEEEEEecc----ccEEEEEEccc
Confidence            566665554 47899998877 444 444443 689999998776 4433212233356666655    45899999888


Q ss_pred             cEEEEECCCCCCCCCCCCCCCCceee--cccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCC
Q 004468          118 EVRLFNLSRFSGRGLDDNAITPSALY--QCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQ  179 (751)
Q Consensus       118 ~V~vwd~~~~~~~~~~~~~~~~~~~~--~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~  179 (751)
                      .|.++......         ..+..+  ......++++.|-+++ ..++.+..+|.|.++....
T Consensus       150 sv~~~~~~~~~---------~~l~~va~d~~~~~v~~~~~l~d~-~~~i~~D~~gnl~~l~~~~  203 (321)
T PF03178_consen  150 SVSLLRYDEEN---------NKLILVARDYQPRWVTAAEFLVDE-DTIIVGDKDGNLFVLRYNP  203 (321)
T ss_dssp             SEEEEEEETTT---------E-EEEEEEESS-BEEEEEEEE-SS-SEEEEEETTSEEEEEEE-S
T ss_pred             CEEEEEEEccC---------CEEEEEEecCCCccEEEEEEecCC-cEEEEEcCCCeEEEEEECC
Confidence            89888665311         112222  2235568888888645 5888999999999998764

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=93.40  E-value=11  Score=42.68  Aligned_cols=65  Identities=12%  Similarity=0.176  Sum_probs=39.0

Q ss_pred             CEEEEEeCCCcEEEEeCCCCeEEEEecccCCc-ceEEEEEecCCCCcEEEEEE---------CCCcEEEEECCCC
Q 004468           63 SLLISGSDDTHINVWSYSSRKLLHSIETGHSA-NVFCTKFVPETSDELVVSGA---------GDAEVRLFNLSRF  127 (751)
Q Consensus        63 ~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~-~V~~v~fsp~s~~~~l~sgs---------~Dg~V~vwd~~~~  127 (751)
                      ..+..++.|+.|.-+|..+|+.+..+...-.. .-..+.-+|.-.+.+++.++         .++.|..+|..++
T Consensus       111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG  185 (488)
T cd00216         111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETG  185 (488)
T ss_pred             CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCC
Confidence            57777888999999999999998877332110 00111222221123454443         3677888888764

The alignment model contains an 8-bladed beta-propeller.

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=93.30  E-value=0.19  Score=49.01  Aligned_cols=67  Identities=12%  Similarity=0.058  Sum_probs=40.3

Q ss_pred             CCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCC
Q 004468          159 NPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDA  238 (751)
Q Consensus       159 ~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~  238 (751)
                      ....++.|+.||.|.+|........       .+       ..          ......+-++--+-+++.+..+++.|+
T Consensus        69 ~~~~~~vG~~dg~v~~~n~n~~g~~-------~d-------~~----------~s~~e~i~~~Ip~~~~~~~~c~~~~dg  124 (238)
T KOG2444|consen   69 ASAKLMVGTSDGAVYVFNWNLEGAH-------SD-------RV----------CSGEESIDLGIPNGRDSSLGCVGAQDG  124 (238)
T ss_pred             cCceEEeecccceEEEecCCccchH-------HH-------hh----------hcccccceeccccccccceeEEeccCC
Confidence            4467889999999999987632100       00       00          001112222222333456899999999


Q ss_pred             eEEEEeCCCCC
Q 004468          239 FARLYDRRMLP  249 (751)
Q Consensus       239 ~IriwD~~~~~  249 (751)
                      .||.|++.-.+
T Consensus       125 ~ir~~n~~p~k  135 (238)
T KOG2444|consen  125 RIRACNIKPNK  135 (238)
T ss_pred             ceeeeccccCc
Confidence            99999987543

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=93.24  E-value=8  Score=40.83  Aligned_cols=219  Identities=13%  Similarity=0.130  Sum_probs=115.2

Q ss_pred             EEEEECCCCCEEEEEe--CCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCC
Q 004468           54 NAISWNSKGSLLISGS--DDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRG  131 (751)
Q Consensus        54 ~~l~~s~dg~~LaSgs--~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~  131 (751)
                      +.++++.||+++....  =-..|.|-|+..++.+..+...  +   |.-.-|.. ++-|.+-+.||++.-..+... |+.
T Consensus        98 ~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P--G---C~~iyP~~-~~~F~~lC~DGsl~~v~Ld~~-Gk~  170 (342)
T PF06433_consen   98 NMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTP--G---CWLIYPSG-NRGFSMLCGDGSLLTVTLDAD-GKE  170 (342)
T ss_dssp             GGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGT--S---EEEEEEEE-TTEEEEEETTSCEEEEEETST-SSE
T ss_pred             cceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCC--C---EEEEEecC-CCceEEEecCCceEEEEECCC-CCE
Confidence            3467888888777653  3456888888888888777322  2   22233442 356888899999999998852 221


Q ss_pred             CCCCCCCCceeecccCCce-eEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccC
Q 004468          132 LDDNAITPSALYQCHTRRV-KKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLAD  210 (751)
Q Consensus       132 ~~~~~~~~~~~~~~h~~~V-~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  210 (751)
                      .    .+....|..-.+++ ..-++.. .+..++--+..|.|+.-|+......          ...-|.+.+....   .
T Consensus       171 ~----~~~t~~F~~~~dp~f~~~~~~~-~~~~~~F~Sy~G~v~~~dlsg~~~~----------~~~~~~~~t~~e~---~  232 (342)
T PF06433_consen  171 A----QKSTKVFDPDDDPLFEHPAYSR-DGGRLYFVSYEGNVYSADLSGDSAK----------FGKPWSLLTDAEK---A  232 (342)
T ss_dssp             E----EEEEEESSTTTS-B-S--EEET-TTTEEEEEBTTSEEEEEEETTSSEE----------EEEEEESS-HHHH---H
T ss_pred             e----EeeccccCCCCcccccccceEC-CCCeEEEEecCCEEEEEeccCCccc----------ccCcccccCcccc---c
Confidence            0    01111222222322 2223433 3334445788999999998776411          0111222110000   0


Q ss_pred             CCCCccceEEEEEeCCCCcEEEEEeC-------C--CeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccc
Q 004468          211 PPKQTLSLKSCDISSTRPHLLLVGGS-------D--AFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLH  281 (751)
Q Consensus       211 ~~~~~~~v~~i~~sp~~~~~l~sgs~-------D--~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  281 (751)
                      ..-....-.-+++++..+++++.-..       |  ..|-+||+.+.+.+..+.                +      ..+
T Consensus       233 ~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~----------------l------~~~  290 (342)
T PF06433_consen  233 DGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIP----------------L------EHP  290 (342)
T ss_dssp             TTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEE----------------E------EEE
T ss_pred             cCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEe----------------C------CCc
Confidence            00011223346777754444433221       1  247777887765443321                1      114


Q ss_pred             eEEEEEcCCCC-EEEEE-eCCCcEEEEECCCCCcceeeee
Q 004468          282 LTHVTFSPNGE-EVLLS-YSGEHVYLMDVNHAGGRAMRYT  319 (751)
Q Consensus       282 vt~v~fspdg~-~Ll~~-s~d~~I~lwdl~~~~~~~~~~~  319 (751)
                      +.+|..+.+.+ +|++. ..++.+.+||..+++.......
T Consensus       291 ~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~  330 (342)
T PF06433_consen  291 IDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ  330 (342)
T ss_dssp             ESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred             cceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence            77899999887 55444 4578999999999765544443

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.21  E-value=0.9  Score=49.59  Aligned_cols=133  Identities=14%  Similarity=0.096  Sum_probs=91.2

Q ss_pred             ccchhhhccccccEEeccCCCcEEEEEECCCCC--EE-----EEEeCCCcEEEEeCCC-CeEEEEecccC----CcceEE
Q 004468           31 QMHSSLVRRLSQERELEGHQGCVNAISWNSKGS--LL-----ISGSDDTHINVWSYSS-RKLLHSIETGH----SANVFC   98 (751)
Q Consensus        31 ~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~--~L-----aSgs~Dg~I~IWd~~~-~~~~~~l~~~h----~~~V~~   98 (751)
                      .++...|.+.+.+.+.+-|.+ |+-+.+.|+++  .|     +.|=.|..|.-||+.- ++-......+|    ..+..|
T Consensus       357 ~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc  435 (644)
T KOG2395|consen  357 KLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSC  435 (644)
T ss_pred             cceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccccccccccce
Confidence            455567899999999998887 88999998653  22     3455788999999862 22111121333    234445


Q ss_pred             EEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecC
Q 004468           99 TKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFR  178 (751)
Q Consensus        99 v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr  178 (751)
                      .+-..   .-+||.||.+|.||+||--..          .....+.+-..+|+.|..+. +|..|+ |..+..+.+.|+.
T Consensus       436 ~aTT~---sG~IvvgS~~GdIRLYdri~~----------~AKTAlPgLG~~I~hVdvta-dGKwil-~Tc~tyLlLi~t~  500 (644)
T KOG2395|consen  436 FATTE---SGYIVVGSLKGDIRLYDRIGR----------RAKTALPGLGDAIKHVDVTA-DGKWIL-ATCKTYLLLIDTL  500 (644)
T ss_pred             eeecC---CceEEEeecCCcEEeehhhhh----------hhhhcccccCCceeeEEeec-cCcEEE-EecccEEEEEEEe
Confidence            44443   358999999999999998421          33556788899999999998 455543 3445678887775


Q ss_pred             C
Q 004468          179 Q  179 (751)
Q Consensus       179 ~  179 (751)
                      -
T Consensus       501 ~  501 (644)
T KOG2395|consen  501 I  501 (644)
T ss_pred             c
Confidence            4

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=92.99  E-value=0.69  Score=45.69  Aligned_cols=110  Identities=17%  Similarity=0.073  Sum_probs=84.5

Q ss_pred             hHHHHHHHHHhhhcCCChhHHHHHhHHHHhcccCC-----CCCchh-------hhhHhHHHHHhhcccccchhhhHHHhh
Q 004468          363 CRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSG-----IGPMLR-------HECLCIRAALLLKRKWKNDAQMAIRDC  430 (751)
Q Consensus       363 ~~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~-----~~~~~~-------~~~~~~ra~~~~~r~w~~d~y~al~d~  430 (751)
                      +..|.+.+|..+..|. |..|+..|.++|.-..+-     ++..-|       -+++.|-+-.+++   .+|.|.++.-|
T Consensus       178 v~~l~q~GN~lfk~~~-ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~---~~e~yevleh~  253 (329)
T KOG0545|consen  178 VPVLHQEGNRLFKLGR-YKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLK---KEEYYEVLEHC  253 (329)
T ss_pred             hHHHHHhhhhhhhhcc-HHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhh---HHHHHHHHHHH
Confidence            4556778888887777 889999999887644331     222222       2355565555554   57899999999


Q ss_pred             HHHhcCCCCCcchHHHHHHHHHHhcchHHHHHHHHHhcccCCCChh
Q 004468          431 YNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSV  476 (751)
Q Consensus       431 ~~a~~~~~~~~~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~~  476 (751)
                      ...+.++|..+||+|+.++|-...=...+|..-+..+....|+-+.
T Consensus       254 seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslas  299 (329)
T KOG0545|consen  254 SEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLAS  299 (329)
T ss_pred             HHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHH
Confidence            9999999999999999999999999999999888888888886543

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=92.97  E-value=0.12  Score=40.84  Aligned_cols=52  Identities=29%  Similarity=0.262  Sum_probs=45.1

Q ss_pred             chhhhHHHhhHHHhcCCCCCcchHHHHHHHHHHhc-chHHHHHHHHHhcccCC
Q 004468          421 NDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLC-KYKEALDFAIAAQCLDP  472 (751)
Q Consensus       421 ~d~y~al~d~~~a~~~~~~~~~a~~~~~~~l~~l~-~~~~a~~~~~~~~~~~p  472 (751)
                      ++.-.|+....+++.++|.+..+++.++.|+..++ ++.+|+.+++....+.|
T Consensus        17 ~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen   17 GDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             THHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            34557889999999999999999999999999999 79999998887765544

...

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.89  E-value=0.25  Score=57.99  Aligned_cols=103  Identities=13%  Similarity=0.166  Sum_probs=71.7

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCc
Q 004468           61 KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPS  140 (751)
Q Consensus        61 dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~  140 (751)
                      -+..+|.|++-|.|...|+...-....-...-.++|.+++|+.+  |.+++.|-.+|.|.+||+...          +++
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~d--g~~l~~G~~~G~V~v~D~~~~----------k~l  165 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQD--GSLLLAGLGDGHVTVWDMHRA----------KIL  165 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCC--CceeccccCCCcEEEEEccCC----------cce
Confidence            45678999999999988876431110111223589999999998  899999999999999999974          557


Q ss_pred             eeecccCCceeEEEEec--CCCCEEEEEeCCCcEEEEec
Q 004468          141 ALYQCHTRRVKKLAVEV--GNPHVVWSASEDGTLRQHDF  177 (751)
Q Consensus       141 ~~~~~h~~~V~~l~~sp--~~~~~l~s~s~Dg~I~iwDl  177 (751)
                      +.+..|..+++.+-+.-  .++..+.++..-|.  +|.+
T Consensus       166 ~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  166 KVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             eeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence            77777777666654431  13345667777676  4444

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=92.88  E-value=4.9  Score=46.38  Aligned_cols=147  Identities=18%  Similarity=0.213  Sum_probs=78.8

Q ss_pred             CCCEEEEEeCC------CcEEEEeCCCCeEEE--EecccCCcceEEEEEecCCCCcEEEEEECCCc-----EEEEECCCC
Q 004468           61 KGSLLISGSDD------THINVWSYSSRKLLH--SIETGHSANVFCTKFVPETSDELVVSGAGDAE-----VRLFNLSRF  127 (751)
Q Consensus        61 dg~~LaSgs~D------g~I~IWd~~~~~~~~--~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~-----V~vwd~~~~  127 (751)
                      +|.+.++||.|      .++-.||..+.+...  .+ ..... =..++.. +  |.+.|.|+.||.     |-.||..+.
T Consensus       332 ~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M-~~~R~-~~~v~~l-~--g~iYavGG~dg~~~l~svE~YDp~~~  406 (571)
T KOG4441|consen  332 NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPM-NTKRS-DFGVAVL-D--GKLYAVGGFDGEKSLNSVECYDPVTN  406 (571)
T ss_pred             CCEEEEEccccCCCcccceEEEecCCCCceeccCCc-cCccc-cceeEEE-C--CEEEEEeccccccccccEEEecCCCC
Confidence            46788899988      346678877665333  22 11111 1122222 2  678889999865     667777653


Q ss_pred             CCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCc------EEEEecCCCCCCCCCCCCCCccceEEEecc
Q 004468          128 SGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGT------LRQHDFRQGSSCPPAGSSHQECRNILLDLR  201 (751)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~------I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~  201 (751)
                      .-        ..+..+.   ......+...-++.+.+.||.|+.      +..||..+.+                    
T Consensus       407 ~W--------~~va~m~---~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~--------------------  455 (571)
T KOG4441|consen  407 KW--------TPVAPML---TRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNT--------------------  455 (571)
T ss_pred             cc--------cccCCCC---cceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCc--------------------
Confidence            21        2222221   122233333337789999997764      4566666543                    


Q ss_pred             cCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCe-----EEEEeCCCCC
Q 004468          202 CGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAF-----ARLYDRRMLP  249 (751)
Q Consensus       202 ~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~-----IriwD~~~~~  249 (751)
                         ...+..............+   ++.++++|+.|+.     |..||..+.+
T Consensus       456 ---W~~~~~M~~~R~~~g~a~~---~~~iYvvGG~~~~~~~~~VE~ydp~~~~  502 (571)
T KOG4441|consen  456 ---WTLIAPMNTRRSGFGVAVL---NGKIYVVGGFDGTSALSSVERYDPETNQ  502 (571)
T ss_pred             ---eeecCCcccccccceEEEE---CCEEEEECCccCCCccceEEEEcCCCCc
Confidence               1122222222222222222   4678888887763     6778887654

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=92.87  E-value=2.5  Score=48.59  Aligned_cols=122  Identities=13%  Similarity=0.108  Sum_probs=78.8

Q ss_pred             cEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCC
Q 004468           52 CVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRG  131 (751)
Q Consensus        52 ~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~  131 (751)
                      ...-+.-|.-++.-+.-+.-..+.|||...+.....-.-...+.|.++.|....+++.+++.|..+.|.++--...+...
T Consensus        31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~  110 (631)
T PF12234_consen   31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTN  110 (631)
T ss_pred             CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhc
Confidence            34444455555544454555679999999887655442355789999999877778999999999999999654211100


Q ss_pred             CCCCCCCCceee--cccC-CceeEEEEecCCCCEEEEEeCCCcEEEEec
Q 004468          132 LDDNAITPSALY--QCHT-RRVKKLAVEVGNPHVVWSASEDGTLRQHDF  177 (751)
Q Consensus       132 ~~~~~~~~~~~~--~~h~-~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDl  177 (751)
                       ..+...++..+  ..|+ .+|.+..|.+ +|.+++.+|  ..+.++|-
T Consensus       111 -~~p~w~~i~~i~i~~~T~h~Igds~Wl~-~G~LvV~sG--Nqlfv~dk  155 (631)
T PF12234_consen  111 -KGPSWAPIRKIDISSHTPHPIGDSIWLK-DGTLVVGSG--NQLFVFDK  155 (631)
T ss_pred             -CCcccceeEEEEeecCCCCCccceeEec-CCeEEEEeC--CEEEEECC
Confidence             11122333332  3455 6799999998 666665443  46777764

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=92.68  E-value=19  Score=39.78  Aligned_cols=34  Identities=3%  Similarity=-0.052  Sum_probs=27.7

Q ss_pred             cceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCC
Q 004468          216 LSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPP  250 (751)
Q Consensus       216 ~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~  250 (751)
                      .++..|++||+ +++++.-..+|.+.+......+.
T Consensus       217 ~~i~~iavSpn-g~~iAl~t~~g~l~v~ssDf~~~  250 (410)
T PF04841_consen  217 GPIIKIAVSPN-GKFIALFTDSGNLWVVSSDFSEK  250 (410)
T ss_pred             CCeEEEEECCC-CCEEEEEECCCCEEEEECcccce
Confidence            47899999995 78999999999999988665443

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=92.63  E-value=6.6  Score=39.30  Aligned_cols=104  Identities=17%  Similarity=0.154  Sum_probs=73.3

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCce
Q 004468           62 GSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSA  141 (751)
Q Consensus        62 g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~  141 (751)
                      .++++.||-.+.++--|.++|..+..-.  -...|-+-+.. -  |++++.|...|.+++-++++++          ...
T Consensus        23 kT~v~igSHs~~~~avd~~sG~~~We~i--lg~RiE~sa~v-v--gdfVV~GCy~g~lYfl~~~tGs----------~~w   87 (354)
T KOG4649|consen   23 KTLVVIGSHSGIVIAVDPQSGNLIWEAI--LGVRIECSAIV-V--GDFVVLGCYSGGLYFLCVKTGS----------QIW   87 (354)
T ss_pred             ceEEEEecCCceEEEecCCCCcEEeehh--hCceeeeeeEE-E--CCEEEEEEccCcEEEEEecchh----------hee
Confidence            4678888888999989999998876542  23445554444 2  5789999999999999999762          233


Q ss_pred             eecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCC
Q 004468          142 LYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGS  181 (751)
Q Consensus       142 ~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~  181 (751)
                      .+.. .+.|++-+....++.+++.|+.|++.+..|.++..
T Consensus        88 ~f~~-~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~  126 (354)
T KOG4649|consen   88 NFVI-LETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYG  126 (354)
T ss_pred             eeee-hhhhccceEEcCCCceEEEecCCCcEEEecccccc
Confidence            3321 23343333322367899999999999999998864

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=92.56  E-value=0.12  Score=34.60  Aligned_cols=32  Identities=16%  Similarity=0.168  Sum_probs=29.4

Q ss_pred             hHHHhcCCCCCcchHHHHHHHHHHhcchHHHH
Q 004468          430 CYNARRIDSSSFRAHLYMSEALEQLCKYKEAL  461 (751)
Q Consensus       430 ~~~a~~~~~~~~~a~~~~~~~l~~l~~~~~a~  461 (751)
                      +.+|++++|+++.+++.++.++...|++.+|.
T Consensus         2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            46799999999999999999999999998874

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=91.99  E-value=16  Score=43.29  Aligned_cols=98  Identities=15%  Similarity=0.050  Sum_probs=55.5

Q ss_pred             CcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCC
Q 004468           51 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGR  130 (751)
Q Consensus        51 ~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~  130 (751)
                      -.|..|.+||+|++||-.|..|.+.+.=.........+ .+-...|.|=.                     +.+...   
T Consensus        85 f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~-~~g~~~i~Crt---------------------~~v~~~---  139 (717)
T PF10168_consen   85 FEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEF-EDGKKEINCRT---------------------VPVDER---  139 (717)
T ss_pred             eeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccc-cCCCcceeEEE---------------------EEechh---
Confidence            36888999999999998888654444322221111122 22222333322                     222210   


Q ss_pred             CCCCCCCCCceeecccCCceeEEEEecCC--CCEEEEEeCCCcEEEEecCCCCCC
Q 004468          131 GLDDNAITPSALYQCHTRRVKKLAVEVGN--PHVVWSASEDGTLRQHDFRQGSSC  183 (751)
Q Consensus       131 ~~~~~~~~~~~~~~~h~~~V~~l~~sp~~--~~~l~s~s~Dg~I~iwDlr~~~~~  183 (751)
                               . ....+...|..+.|+|..  +..|+.-..|+++|+||+.....+
T Consensus       140 ---------~-~~~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~~~p  184 (717)
T PF10168_consen  140 ---------F-FTSNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDPQHP  184 (717)
T ss_pred             ---------h-ccCCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCCCCC
Confidence                     1 112345667888998842  356667788899999999765533

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=91.75  E-value=2.3  Score=45.55  Aligned_cols=217  Identities=15%  Similarity=0.215  Sum_probs=98.6

Q ss_pred             EECCCCCEEEEEeC-CCc--EEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCC
Q 004468           57 SWNSKGSLLISGSD-DTH--INVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLD  133 (751)
Q Consensus        57 ~~s~dg~~LaSgs~-Dg~--I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~  133 (751)
                      +|.++|+.|+-+|+ ||.  +.+-|+.+++..+-. .+-..+.+...++|+  ++.++-......|+--|+.+..     
T Consensus        42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLT-dg~g~~~~g~~~s~~--~~~~~Yv~~~~~l~~vdL~T~e-----  113 (386)
T PF14583_consen   42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLT-DGPGDNTFGGFLSPD--DRALYYVKNGRSLRRVDLDTLE-----  113 (386)
T ss_dssp             -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE----SS-B-TTT-EE-TT--SSEEEEEETTTEEEEEETTT-------
T ss_pred             CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECc-cCCCCCccceEEecC--CCeEEEEECCCeEEEEECCcCc-----
Confidence            56788976665554 555  555678877655433 232344556777888  4666545556788888888642     


Q ss_pred             CCCCCCceeecccCCceeEEEEec-CCCCEEEEEeCCCcEEEEecCCCCC---CCCCCCCCCccceEEEecccCceeccc
Q 004468          134 DNAITPSALYQCHTRRVKKLAVEV-GNPHVVWSASEDGTLRQHDFRQGSS---CPPAGSSHQECRNILLDLRCGAKRSLA  209 (751)
Q Consensus       134 ~~~~~~~~~~~~h~~~V~~l~~sp-~~~~~l~s~s~Dg~I~iwDlr~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~  209 (751)
                           ....+.-....+-...|.. .+...++-.-....    |......   ..........|+.+.+++.+|....+.
T Consensus       114 -----~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~----d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~  184 (386)
T PF14583_consen  114 -----ERVVYEVPDDWKGYGTWVANSDCTKLVGIEISRE----DWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVF  184 (386)
T ss_dssp             -----EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGG----G-----SHHHHHHHHHC---EEEEEEETTT--EEEEE
T ss_pred             -----EEEEEECCcccccccceeeCCCccEEEEEEEeeh----hccCccccHHHHHHHhhCCCceEEEEECCCCceeEEE
Confidence                 2233444455555555642 23344322111000    0000000   000011223466677777777665544


Q ss_pred             CCCCCccceEEEEEeCCCCcEEEEEeC---CCe-EEEEeCCCCC-CccccCCCCCCCCccccccccccccCCccccceEE
Q 004468          210 DPPKQTLSLKSCDISSTRPHLLLVGGS---DAF-ARLYDRRMLP-PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTH  284 (751)
Q Consensus       210 ~~~~~~~~v~~i~~sp~~~~~l~sgs~---D~~-IriwD~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~  284 (751)
                      .   ...++..+.|+|.++.+|+-|-.   |.. -|||=+++-. ....+                +.  + .....+..
T Consensus       185 ~---~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v----------------~~--~-~~~e~~gH  242 (386)
T PF14583_consen  185 E---DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKV----------------HR--R-MEGESVGH  242 (386)
T ss_dssp             E---ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EES----------------S------TTEEEEE
T ss_pred             e---cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceee----------------ec--C-CCCccccc
Confidence            3   34578899999998888777643   332 3667665322 11110                00  0 01123666


Q ss_pred             EEEcCCCCEEEEEeC-----CCcEEEEECCCCC
Q 004468          285 VTFSPNGEEVLLSYS-----GEHVYLMDVNHAG  312 (751)
Q Consensus       285 v~fspdg~~Ll~~s~-----d~~I~lwdl~~~~  312 (751)
                      =-|.|||..|.--+.     +..|.-+|+.++.
T Consensus       243 Efw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~  275 (386)
T PF14583_consen  243 EFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGE  275 (386)
T ss_dssp             EEE-TTSS-EEEEEEETTT--EEEEEE-TTT--
T ss_pred             ccccCCCCEEEEEeecCCCCceEEEeeCCCCCC
Confidence            779999987664332     3356667777754

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=91.75  E-value=0.46  Score=34.46  Aligned_cols=30  Identities=13%  Similarity=0.309  Sum_probs=27.8

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004468          281 HLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (751)
Q Consensus       281 ~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~  310 (751)
                      .|..++|+|....|++++.+|.|.||.++.
T Consensus        13 ~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~   42 (47)
T PF12894_consen   13 RVSCMSWCPTMDLIALGTEDGEVLVYRLNW   42 (47)
T ss_pred             cEEEEEECCCCCEEEEEECCCeEEEEECCC
Confidence            599999999999999999999999999943

>PHA03098 kelch-like protein; Provisional

Probab=91.71  E-value=7.5  Score=44.66  Aligned_cols=63  Identities=10%  Similarity=0.077  Sum_probs=33.2

Q ss_pred             CCCEEEEEeCCC------cEEEEeCCCCeEEEEec-ccCCcceEEEEEecCCCCcEEEEEECC-----CcEEEEECCCC
Q 004468           61 KGSLLISGSDDT------HINVWSYSSRKLLHSIE-TGHSANVFCTKFVPETSDELVVSGAGD-----AEVRLFNLSRF  127 (751)
Q Consensus        61 dg~~LaSgs~Dg------~I~IWd~~~~~~~~~l~-~~h~~~V~~v~fsp~s~~~~l~sgs~D-----g~V~vwd~~~~  127 (751)
                      ++.+++.||.++      .+..||..+.+....-. ....... ++... +  +.+++.||.+     ..+..||..+.
T Consensus       294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~-~~~~~-~--~~lyv~GG~~~~~~~~~v~~yd~~~~  368 (534)
T PHA03098        294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNP-GVTVF-N--NRIYVIGGIYNSISLNTVESWKPGES  368 (534)
T ss_pred             CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccc-eEEEE-C--CEEEEEeCCCCCEecceEEEEcCCCC
Confidence            456677776543      46778877665432110 1111111 22222 3  5777788765     34677887653

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=91.70  E-value=0.34  Score=37.70  Aligned_cols=52  Identities=31%  Similarity=0.309  Sum_probs=45.2

Q ss_pred             hhhhHHHhhHHHhcCCCCCcchHHHHHHHHHHhcchHHHHHHHHHhcccCCC
Q 004468          422 DAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPS  473 (751)
Q Consensus       422 d~y~al~d~~~a~~~~~~~~~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~  473 (751)
                      +.-.|+.....++..+|.+..+++.++.++...|++.+|...++.+....|.
T Consensus        12 ~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~   63 (65)
T PF13432_consen   12 DYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPD   63 (65)
T ss_dssp             HHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence            3446778888999999999999999999999999999999999888877774

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=91.64  E-value=2.3  Score=46.03  Aligned_cols=129  Identities=17%  Similarity=0.224  Sum_probs=68.7

Q ss_pred             EEEEECCCCCEEEEEeC--------------------CCcEEEEeCCCCeEEEEecccCCc-ceEEEEEecCCC-CcEEE
Q 004468           54 NAISWNSKGSLLISGSD--------------------DTHINVWSYSSRKLLHSIETGHSA-NVFCTKFVPETS-DELVV  111 (751)
Q Consensus        54 ~~l~~s~dg~~LaSgs~--------------------Dg~I~IWd~~~~~~~~~l~~~h~~-~V~~v~fsp~s~-~~~l~  111 (751)
                      ..+-|.|.-+.++|...                    -.++.+||+.+.+.++++..+-.+ ....|+|..+.. ..-++
T Consensus       184 YDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFv  263 (461)
T PF05694_consen  184 YDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFV  263 (461)
T ss_dssp             --EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEE
T ss_pred             CCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEE
Confidence            34556666677777642                    456999999999999999666544 477899987632 23466


Q ss_pred             EEECCCcEEEEECCCCCCCC-----CCCC------C--CCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecC
Q 004468          112 SGAGDAEVRLFNLSRFSGRG-----LDDN------A--ITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFR  178 (751)
Q Consensus       112 sgs~Dg~V~vwd~~~~~~~~-----~~~~------~--~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr  178 (751)
                      .+.-..+|..|--... +.-     ++..      .  .+.++.+..-..-|+.|..|.++..+.+++=.+|.||+||+.
T Consensus       264 g~aLss~i~~~~k~~~-g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDIS  342 (461)
T PF05694_consen  264 GCALSSSIWRFYKDDD-GEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDIS  342 (461)
T ss_dssp             EEE--EEEEEEEE-ET-TEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-S
T ss_pred             EEeccceEEEEEEcCC-CCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecC
Confidence            6666666666654321 100     0000      0  001111222245589999999887778888899999999999


Q ss_pred             CCCCC
Q 004468          179 QGSSC  183 (751)
Q Consensus       179 ~~~~~  183 (751)
                      .....
T Consensus       343 DP~~P  347 (461)
T PF05694_consen  343 DPFNP  347 (461)
T ss_dssp             STTS-
T ss_pred             CCCCC
Confidence            87644

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.96  E-value=0.81  Score=49.58  Aligned_cols=92  Identities=17%  Similarity=0.124  Sum_probs=71.5

Q ss_pred             cCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcchHHHHHHHHHHhc
Q 004468          376 EGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLC  455 (751)
Q Consensus       376 ~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~a~~~~~~~l~~l~  455 (751)
                      .++.|..|++.|..+|..-+..-.-.+....+.+-|.+.+.  |..|+-.|+.=|.+|+.+||..-.|.--|+.-.++.+
T Consensus       474 DqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~q--wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~  551 (606)
T KOG0547|consen  474 DQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQ--WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRG  551 (606)
T ss_pred             hHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhc--hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHh
Confidence            33348889999999988766621111222344555555555  9999999999999999999999999999999999999


Q ss_pred             chHHHHHHHHHhcc
Q 004468          456 KYKEALDFAIAAQC  469 (751)
Q Consensus       456 ~~~~a~~~~~~~~~  469 (751)
                      +..+|++..+++..
T Consensus       552 ~i~eAielFEksa~  565 (606)
T KOG0547|consen  552 KIDEAIELFEKSAQ  565 (606)
T ss_pred             hHHHHHHHHHHHHH
Confidence            99999998876643

>PRK11189 lipoprotein NlpI; Provisional

Probab=90.77  E-value=2.3  Score=44.77  Aligned_cols=100  Identities=16%  Similarity=-0.011  Sum_probs=78.9

Q ss_pred             HHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcchHH
Q 004468          366 LVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHL  445 (751)
Q Consensus       366 l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~a~~  445 (751)
                      ....+.-....|. +..|+..|.+++...++.      ...|.+++..+...+   +.-.|+....+++.++|.+..+++
T Consensus        67 ~~~~g~~~~~~g~-~~~A~~~~~~Al~l~P~~------~~a~~~lg~~~~~~g---~~~~A~~~~~~Al~l~P~~~~a~~  136 (296)
T PRK11189         67 HYERGVLYDSLGL-RALARNDFSQALALRPDM------ADAYNYLGIYLTQAG---NFDAAYEAFDSVLELDPTYNYAYL  136 (296)
T ss_pred             HHHHHHHHHHCCC-HHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHCC---CHHHHHHHHHHHHHhCCCCHHHHH
Confidence            3444555555566 778888999999876554      346677777776554   355678888999999999999999


Q ss_pred             HHHHHHHHhcchHHHHHHHHHhcccCCCCh
Q 004468          446 YMSEALEQLCKYKEALDFAIAAQCLDPSNS  475 (751)
Q Consensus       446 ~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~  475 (751)
                      .++.++...|++.+|+..+.......|...
T Consensus       137 ~lg~~l~~~g~~~eA~~~~~~al~~~P~~~  166 (296)
T PRK11189        137 NRGIALYYGGRYELAQDDLLAFYQDDPNDP  166 (296)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence            999999999999999999999888888764

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=90.64  E-value=0.78  Score=36.49  Aligned_cols=53  Identities=26%  Similarity=0.229  Sum_probs=47.3

Q ss_pred             hhhHHHhhHHHhcCCCCCcchHHHHHHHHHHhcchHHHHHHHHHhcccCCCCh
Q 004468          423 AQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNS  475 (751)
Q Consensus       423 ~y~al~d~~~a~~~~~~~~~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~  475 (751)
                      .-.|+..+..++.++|.++.+++.++.++..+|++.+|...+......-|...
T Consensus        11 ~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~   63 (73)
T PF13371_consen   11 YEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDP   63 (73)
T ss_pred             HHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcH
Confidence            34678888999999999999999999999999999999999998888878544

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=90.50  E-value=17  Score=37.13  Aligned_cols=61  Identities=11%  Similarity=0.225  Sum_probs=45.1

Q ss_pred             EECCCCCEEEEEeC-----CCcEEEEeCCCC-eEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEE
Q 004468           57 SWNSKGSLLISGSD-----DTHINVWSYSSR-KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLF  122 (751)
Q Consensus        57 ~~s~dg~~LaSgs~-----Dg~I~IWd~~~~-~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vw  122 (751)
                      .|||||.+|...-.     -|.|-|||...+ +.+..+ ..|.-.-..+.|.++  |+.++.+.  |-|...
T Consensus       120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~-~t~GiGpHev~lm~D--Grtlvvan--GGIeth  186 (366)
T COG3490         120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEF-STHGIGPHEVTLMAD--GRTLVVAN--GGIETH  186 (366)
T ss_pred             ccCCCCcEEEeecCCCCCCCceEEEEecccccceeccc-ccCCcCcceeEEecC--CcEEEEeC--Cceecc
Confidence            59999998887644     356889998754 345556 678888889999999  88888764  445555

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=90.31  E-value=17  Score=37.40  Aligned_cols=162  Identities=17%  Similarity=0.171  Sum_probs=84.5

Q ss_pred             CCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCC
Q 004468          106 SDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPP  185 (751)
Q Consensus       106 ~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~  185 (751)
                      .++.|+.|..+| +.++++....         .+....  +...|..+...|+- +.++.-+ |+.+.++++..-.....
T Consensus         6 ~~~~L~vGt~~G-l~~~~~~~~~---------~~~~i~--~~~~I~ql~vl~~~-~~llvLs-d~~l~~~~L~~l~~~~~   71 (275)
T PF00780_consen    6 WGDRLLVGTEDG-LYVYDLSDPS---------KPTRIL--KLSSITQLSVLPEL-NLLLVLS-DGQLYVYDLDSLEPVST   71 (275)
T ss_pred             CCCEEEEEECCC-EEEEEecCCc---------cceeEe--ecceEEEEEEeccc-CEEEEEc-CCccEEEEchhhccccc
Confidence            368899998888 8999993221         122222  33449999998844 4544443 49999999987654321


Q ss_pred             CCCCCCccceEEEecccCceecccCCCCCccceEEEE-EeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCcc
Q 004468          186 AGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCD-ISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCV  264 (751)
Q Consensus       186 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~-~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~  264 (751)
                      ........ ..          ...........+..++ -....+...++......|.+|..........        ...
T Consensus        72 ~~~~~~~~-~~----------~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~--------~~~  132 (275)
T PF00780_consen   72 SAPLAFPK-SR----------SLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFS--------KLL  132 (275)
T ss_pred             cccccccc-cc----------cccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCccccc--------cee
Confidence            10000000 00          0000000112233333 1122334444455556899988765311000        001


Q ss_pred             ccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCC
Q 004468          265 NYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG  312 (751)
Q Consensus       265 ~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~  312 (751)
                      +.+   .+.      ..+.+++|.  ++.|+++..+ ...+.|+.++.
T Consensus       133 ke~---~lp------~~~~~i~~~--~~~i~v~~~~-~f~~idl~~~~  168 (275)
T PF00780_consen  133 KEI---SLP------DPPSSIAFL--GNKICVGTSK-GFYLIDLNTGS  168 (275)
T ss_pred             EEE---EcC------CCcEEEEEe--CCEEEEEeCC-ceEEEecCCCC
Confidence            111   111      147888898  6667777754 58899999754

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PRK13616 lipoprotein LpqB; Provisional

Probab=90.24  E-value=22  Score=41.16  Aligned_cols=105  Identities=10%  Similarity=0.123  Sum_probs=58.7

Q ss_pred             CcEEEEEECCCCCEEEEEe------CCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECC-CcEEEE-
Q 004468           51 GCVNAISWNSKGSLLISGS------DDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD-AEVRLF-  122 (751)
Q Consensus        51 ~~V~~l~~s~dg~~LaSgs------~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~D-g~V~vw-  122 (751)
                      ..|...+++|+|+.+|..-      .|..-.||=...+.....+..+.  ....-.|+|+  |..|++.+.. ..+++. 
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g~--~~t~PsWspD--G~~lw~v~dg~~~~~v~~  425 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEGH--SLTRPSWSLD--ADAVWVVVDGNTVVRVIR  425 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecCC--CCCCceECCC--CCceEEEecCcceEEEec
Confidence            3577889999999887665      34444444322222223332333  3788899999  6766666432 222222 


Q ss_pred             ----------ECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEE
Q 004468          123 ----------NLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQ  174 (751)
Q Consensus       123 ----------d~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~i  174 (751)
                                ++..+          +...   ...+.|..+.|+|++ ..++... +|.|.+
T Consensus       426 ~~~~gql~~~~vd~g----------e~~~---~~~g~Issl~wSpDG-~RiA~i~-~g~v~V  472 (591)
T PRK13616        426 DPATGQLARTPVDAS----------AVAS---RVPGPISELQLSRDG-VRAAMII-GGKVYL  472 (591)
T ss_pred             cCCCceEEEEeccCc----------hhhh---ccCCCcCeEEECCCC-CEEEEEE-CCEEEE
Confidence                      33221          1111   235679999999955 5444333 466655

>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]

Probab=90.10  E-value=41  Score=40.34  Aligned_cols=236  Identities=12%  Similarity=0.103  Sum_probs=114.7

Q ss_pred             EEEEeCCCcEEEEeCCCCeEEEEec-------ccCCcceEEEEEecCCCCcEEEEEECC---CcEEEEECCCCCC--CCC
Q 004468           65 LISGSDDTHINVWSYSSRKLLHSIE-------TGHSANVFCTKFVPETSDELVVSGAGD---AEVRLFNLSRFSG--RGL  132 (751)
Q Consensus        65 LaSgs~Dg~I~IWd~~~~~~~~~l~-------~~h~~~V~~v~fsp~s~~~~l~sgs~D---g~V~vwd~~~~~~--~~~  132 (751)
                      ++.-...|.|++|=.+.........       ..-...|+-.++.|..+|+.++.++.+   +.|++|.+.-.-+  .+.
T Consensus        65 ~i~Vt~nG~l~l~yQ~~~~~~~~~s~~el~s~~~s~~~ithAsi~~~~~g~~ili~t~s~~s~~l~~yrv~I~W~~~~~~  144 (753)
T PF11635_consen   65 CIAVTRNGLLKLWYQKPDGQWNESSTAELESLGSSDDLITHASIAPSDNGKSILIATYSSLSKQLRFYRVQIDWNAKPQQ  144 (753)
T ss_pred             EEEEecCCeEEEEEEcCCCccceeehhhhccccccccceeeceeeecCCCCEEEEEEccccCCceEEEEEEEeccCcCcc
Confidence            4444567889988663221111110       123456777777744446666655555   7888887654322  111


Q ss_pred             CCCCCCCceeec---------------------ccCCceeEEEEec------CCCCEEEEEeCC----CcEEEEecCCCC
Q 004468          133 DDNAITPSALYQ---------------------CHTRRVKKLAVEV------GNPHVVWSASED----GTLRQHDFRQGS  181 (751)
Q Consensus       133 ~~~~~~~~~~~~---------------------~h~~~V~~l~~sp------~~~~~l~s~s~D----g~I~iwDlr~~~  181 (751)
                      -+.+..|...+.                     ..-..++.+.|-+      ..+.++++.+..    ..|..|.++...
T Consensus       145 ~d~q~~PSl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~LthL~ils~~~~~~~~p~Ili~~~~~~~~~SiI~RweL~~~~  224 (753)
T PF11635_consen  145 IDPQKLPSLFLSHIADETPKDVDPTGWGDPSPDNSMYQLTHLEILSPTPDKDSAPEILIVYSSPNTPSSIIERWELREEQ  224 (753)
T ss_pred             CCCCcCCeEEEEeccccccccccCccccccCcccccccceeEEEeccCCCCCCCCeEEEEEEcCCCCCcEEEEEEEEccC
Confidence            000000111110                     0113566777754      233455555433    368899998764


Q ss_pred             CCC-CCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCC
Q 004468          182 SCP-PAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSP  260 (751)
Q Consensus       182 ~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~  260 (751)
                      ... .....-....+................-.....|.++..... +.+++..-.||.|.++|+.+.+.+........+
T Consensus       225 ~~lh~~F~ql~s~~~~~~~~~~~~~l~~~~~i~~~~~V~si~~~~~-~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~  303 (753)
T PF11635_consen  225 QPLHPAFQQLGSKKNSSSEPPPTYRLRRLDDITLNKRVVSITSPEL-DIVVAFAFSDGSIEFRDRNTMKELNETRTNGEP  303 (753)
T ss_pred             cccchhhhhcCCCCcCCCCCCCceeEEEecccccCCeEEEEEeccc-CcEEEEEEcCCeEEEEecCcchhhcccccccCC
Confidence            221 000000000000000000000000001112345667766664 568999999999999999998766544111111


Q ss_pred             CC-ccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEE
Q 004468          261 PP-CVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVY  304 (751)
Q Consensus       261 ~~-~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~  304 (751)
                      +. ....+..+....  ... .+-.++|||++.-++.-..++.+.
T Consensus       304 ~~~v~s~~~~Gf~fp--~~~-~~~~vafSPt~c~~v~~~~~~~~~  345 (753)
T PF11635_consen  304 PNTVTSLFQAGFHFP--CIQ-PPLHVAFSPTMCSLVQIDEDGKTK  345 (753)
T ss_pred             ccccccccccccccc--cCC-CCceEEECcccceEEEEecCCCce
Confidence            11 111111111110  001 355789999999999888888855

It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=89.93  E-value=28  Score=36.54  Aligned_cols=115  Identities=17%  Similarity=0.261  Sum_probs=57.9

Q ss_pred             cCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCC
Q 004468           48 GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRF  127 (751)
Q Consensus        48 gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~  127 (751)
                      +-.+.++.+.-+++|+++|+++.-..+.-||.....-...- ..-...|..+.|.|+  +.+.+.+ ..|.|+.=+....
T Consensus       142 ~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~-r~~~~riq~~gf~~~--~~lw~~~-~Gg~~~~s~~~~~  217 (302)
T PF14870_consen  142 ETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHN-RNSSRRIQSMGFSPD--GNLWMLA-RGGQIQFSDDPDD  217 (302)
T ss_dssp             S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE---SSS-EEEEEE-TT--S-EEEEE-TTTEEEEEE-TTE
T ss_pred             CCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEc-cCccceehhceecCC--CCEEEEe-CCcEEEEccCCCC
Confidence            34577889999999999998877666678886533222222 345688999999999  5665544 7888888772211


Q ss_pred             CCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEE
Q 004468          128 SGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLR  173 (751)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~  173 (751)
                       ....    .+++.....-.-.+..++|.+ +.. ++.++..|++.
T Consensus       218 -~~~w----~~~~~~~~~~~~~~ld~a~~~-~~~-~wa~gg~G~l~  256 (302)
T PF14870_consen  218 -GETW----SEPIIPIKTNGYGILDLAYRP-PNE-IWAVGGSGTLL  256 (302)
T ss_dssp             -EEEE-------B-TTSS--S-EEEEEESS-SS--EEEEESTT-EE
T ss_pred             -cccc----ccccCCcccCceeeEEEEecC-CCC-EEEEeCCccEE
Confidence             0000    011111212233478889987 434 44556667664

>PHA02790 Kelch-like protein; Provisional

Probab=89.92  E-value=18  Score=40.92  Aligned_cols=106  Identities=9%  Similarity=-0.064  Sum_probs=51.2

Q ss_pred             CCCEEEEEeCCC-----cEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECC--CcEEEEECCCCCCCCCC
Q 004468           61 KGSLLISGSDDT-----HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD--AEVRLFNLSRFSGRGLD  133 (751)
Q Consensus        61 dg~~LaSgs~Dg-----~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~D--g~V~vwd~~~~~~~~~~  133 (751)
                      ++.+++.||.++     ++..||+.++.....-.......-.++.. -+  +.+.+.|+.+  .++..||.....-    
T Consensus       271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~-~~--~~iYviGG~~~~~sve~ydp~~n~W----  343 (480)
T PHA02790        271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVP-AN--NKLYVVGGLPNPTSVERWFHGDAAW----  343 (480)
T ss_pred             CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEE-EC--CEEEEECCcCCCCceEEEECCCCeE----
Confidence            456677887643     46678887665432111111111122222 23  5677777754  3577788764311    


Q ss_pred             CCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCC---cEEEEecCCC
Q 004468          134 DNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG---TLRQHDFRQG  180 (751)
Q Consensus       134 ~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg---~I~iwDlr~~  180 (751)
                          ..+..+....... +++. - ++++.+.||.++   ++..||.++.
T Consensus       344 ----~~~~~l~~~r~~~-~~~~-~-~g~IYviGG~~~~~~~ve~ydp~~~  386 (480)
T PHA02790        344 ----VNMPSLLKPRCNP-AVAS-I-NNVIYVIGGHSETDTTTEYLLPNHD  386 (480)
T ss_pred             ----EECCCCCCCCccc-EEEE-E-CCEEEEecCcCCCCccEEEEeCCCC
Confidence                1111221111111 1221 2 668888888654   3556666543

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=89.87  E-value=0.65  Score=36.33  Aligned_cols=53  Identities=23%  Similarity=0.200  Sum_probs=46.0

Q ss_pred             hhhhHHHhhHHHhcCCCCCcchHHHHHHHHHHhcchHHHHHHHHHhcccCCCC
Q 004468          422 DAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSN  474 (751)
Q Consensus       422 d~y~al~d~~~a~~~~~~~~~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~  474 (751)
                      +.-.|+.-..+++..+|.+..+.+.+++|+...|++.+|...+..+....|..
T Consensus         6 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~   58 (68)
T PF14559_consen    6 DYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDN   58 (68)
T ss_dssp             HHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTH
T ss_pred             CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCH
Confidence            34557777888999999999999999999999999999999999988888863

...

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=89.84  E-value=19  Score=39.29  Aligned_cols=173  Identities=9%  Similarity=0.014  Sum_probs=79.0

Q ss_pred             EEEECCCCCEEEEE--e----CCCcEEEEeCCCCeEEEEecccC--CcceEEEEEecCCCCcEEEEEE------------
Q 004468           55 AISWNSKGSLLISG--S----DDTHINVWSYSSRKLLHSIETGH--SANVFCTKFVPETSDELVVSGA------------  114 (751)
Q Consensus        55 ~l~~s~dg~~LaSg--s----~Dg~I~IWd~~~~~~~~~l~~~h--~~~V~~v~fsp~s~~~~l~sgs------------  114 (751)
                      .+---|+|++++|+  .    .-|-+.+.|-++...+.......  ...-..+-|.|.  -+.++|..            
T Consensus       134 T~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr--~nvMiSSeWg~P~~~~~Gf~  211 (461)
T PF05694_consen  134 TVHCLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPR--HNVMISSEWGAPSMFEKGFN  211 (461)
T ss_dssp             EEEE-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETT--TTEEEE-B---HHHHTT---
T ss_pred             eeeecCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCC--CCEEEEeccCChhhcccCCC
Confidence            33444689888886  2    23458888888777666653322  334556777887  46777764            


Q ss_pred             --------CCCcEEEEECCCCCCCCCCCCCCCCceeecccC--CceeEEEEec--CCCCEEEEEeCCCcEEEEec-CCCC
Q 004468          115 --------GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHT--RRVKKLAVEV--GNPHVVWSASEDGTLRQHDF-RQGS  181 (751)
Q Consensus       115 --------~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~--~~V~~l~~sp--~~~~~l~s~s~Dg~I~iwDl-r~~~  181 (751)
                              .-.++.+||+...          ++++++.--.  ..+..|.|..  +...-|+.+....+|..|-- ..++
T Consensus       212 ~~d~~~~~yG~~l~vWD~~~r----------~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~  281 (461)
T PF05694_consen  212 PEDLEAGKYGHSLHVWDWSTR----------KLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGE  281 (461)
T ss_dssp             TTTHHHH-S--EEEEEETTTT----------EEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTE
T ss_pred             hhHhhcccccCeEEEEECCCC----------cEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCC
Confidence                    2367999999975          4566655332  2356677754  33445766666666665543 2221


Q ss_pred             CCCCCCCCCCccceEEEecccCce------ecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCC
Q 004468          182 SCPPAGSSHQECRNILLDLRCGAK------RSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP  249 (751)
Q Consensus       182 ~~~~~~~~~~~~~~~l~~~~~~~~------~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~  249 (751)
                               - ....+++......      ..+..+.....-++.|.+|.+|..+.+++=.+|.||.||+....
T Consensus       282 ---------W-~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~  345 (461)
T PF05694_consen  282 ---------W-AAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPF  345 (461)
T ss_dssp             ---------E-EEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTT
T ss_pred             ---------e-eeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCC
Confidence                     0 0111222111000      00000111134578999999876666667789999999998643

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PHA02713 hypothetical protein; Provisional

Probab=89.55  E-value=5.8  Score=45.75  Aligned_cols=23  Identities=0%  Similarity=0.144  Sum_probs=18.1

Q ss_pred             CCcEEEEEeCCC--eEEEEeCCCCC
Q 004468          227 RPHLLLVGGSDA--FARLYDRRMLP  249 (751)
Q Consensus       227 ~~~~l~sgs~D~--~IriwD~~~~~  249 (751)
                      ++++.++|+.|+  .+-.||..+.+
T Consensus       512 ~~~iyv~Gg~~~~~~~e~yd~~~~~  536 (557)
T PHA02713        512 DNTIMMLHCYESYMLQDTFNVYTYE  536 (557)
T ss_pred             CCEEEEEeeecceeehhhcCccccc
Confidence            568999999888  77788877654

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=89.45  E-value=27  Score=35.65  Aligned_cols=126  Identities=10%  Similarity=0.012  Sum_probs=74.3

Q ss_pred             cccccEEeccC-CCcEEEEEECCCCCEEEEEeCCC--cEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEEC
Q 004468           39 RLSQERELEGH-QGCVNAISWNSKGSLLISGSDDT--HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG  115 (751)
Q Consensus        39 ~~~~~~~L~gH-~~~V~~l~~s~dg~~LaSgs~Dg--~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~  115 (751)
                      +.+.++++.-. +.-...+.|..+|.++-|.+.-|  .|+.+|+.+++.+........----.+....   +.++.-.-.
T Consensus        32 ~~~vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~---d~l~qLTWk  108 (264)
T PF05096_consen   32 SYEVVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILG---DKLYQLTWK  108 (264)
T ss_dssp             EEEEEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEET---TEEEEEESS
T ss_pred             eeEEEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEEC---CEEEEEEec
Confidence            34556665522 23455788988899999998766  6999999999877655333222222344443   355556677


Q ss_pred             CCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCC
Q 004468          116 DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGS  181 (751)
Q Consensus       116 Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~  181 (751)
                      ++...+||..+.          +.+..+.- .+.=+.++  .++..+++| .....|..+|..+-+
T Consensus       109 ~~~~f~yd~~tl----------~~~~~~~y-~~EGWGLt--~dg~~Li~S-DGS~~L~~~dP~~f~  160 (264)
T PF05096_consen  109 EGTGFVYDPNTL----------KKIGTFPY-PGEGWGLT--SDGKRLIMS-DGSSRLYFLDPETFK  160 (264)
T ss_dssp             SSEEEEEETTTT----------EEEEEEE--SSS--EEE--ECSSCEEEE--SSSEEEEE-TTT-S
T ss_pred             CCeEEEEccccc----------eEEEEEec-CCcceEEE--cCCCEEEEE-CCccceEEECCcccc
Confidence            899999999864          44555532 33446666  324455544 445678888877654

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=89.02  E-value=4.6  Score=48.32  Aligned_cols=156  Identities=18%  Similarity=0.138  Sum_probs=90.7

Q ss_pred             ceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCce---eecccCCceeEEEEecCCCCEEEEEeCCCc
Q 004468           95 NVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSA---LYQCHTRRVKKLAVEVGNPHVVWSASEDGT  171 (751)
Q Consensus        95 ~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~---~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~  171 (751)
                      .|..+...++.....++..+.+-.|..||++........  ...+++   +......-+.++.|+|.-+..++.+..|+.
T Consensus       102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~--~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dls  179 (1405)
T KOG3630|consen  102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYE--TTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLS  179 (1405)
T ss_pred             cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhh--hccccccccchhccccccccccccCCccchhhhhccccc
Confidence            344444455521234445556668999999864321100  001111   111223445678898866667778889999


Q ss_pred             EEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCc
Q 004468          172 LRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPL  251 (751)
Q Consensus       172 I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~  251 (751)
                      |++.-+......         |               .. ......+++++|+| ++..+++|-+.|++.-|...-. ..
T Consensus       180 l~V~~~~~~~~~---------v---------------~s-~p~t~~~Tav~WSp-rGKQl~iG~nnGt~vQy~P~le-ik  232 (1405)
T KOG3630|consen  180 LRVKSTKQLAQN---------V---------------TS-FPVTNSQTAVLWSP-RGKQLFIGRNNGTEVQYEPSLE-IK  232 (1405)
T ss_pred             hhhhhhhhhhhh---------h---------------cc-cCcccceeeEEecc-ccceeeEecCCCeEEEeecccc-ee
Confidence            988876543211         0               00 11345789999999 5899999999999999976422 11


Q ss_pred             cccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEE
Q 004468          252 TSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLL  296 (751)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~  296 (751)
                      ..+.   .|+         .     ...+.|.+|+|-....+|++
T Consensus       233 ~~ip---~Pp---------~-----~e~yrvl~v~Wl~t~eflvv  260 (1405)
T KOG3630|consen  233 SEIP---EPP---------V-----EENYRVLSVTWLSTQEFLVV  260 (1405)
T ss_pred             eccc---CCC---------c-----CCCcceeEEEEecceeEEEE
Confidence            1111   011         0     01346999999887776654

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=88.85  E-value=1.1  Score=31.53  Aligned_cols=33  Identities=15%  Similarity=0.090  Sum_probs=27.3

Q ss_pred             CceeEEEEecCCC--CEEEEEeCCCcEEEEecCCC
Q 004468          148 RRVKKLAVEVGNP--HVVWSASEDGTLRQHDFRQG  180 (751)
Q Consensus       148 ~~V~~l~~sp~~~--~~l~s~s~Dg~I~iwDlr~~  180 (751)
                      +.|.++.|+|..+  .+|+.+-.-|.|.++|+|+.
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~   35 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN   35 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence            4688999998665  68888878899999999964

It contains a characteristic DLL sequence motif.

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=88.82  E-value=6  Score=34.38  Aligned_cols=103  Identities=15%  Similarity=0.010  Sum_probs=72.1

Q ss_pred             HHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCC---cch
Q 004468          367 VEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSS---FRA  443 (751)
Q Consensus       367 ~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~---~~a  443 (751)
                      ...+...+..++ +..++..+..++..++.....   ...+...+.++.+.+   +.-.|+.-...++..+|.+   ..+
T Consensus         6 ~~~~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~p~~~~~~~~   78 (119)
T TIGR02795         6 YDAALLVLKAGD-YADAIQAFQAFLKKYPKSTYA---PNAHYWLGEAYYAQG---KYADAAKAFLAVVKKYPKSPKAPDA   78 (119)
T ss_pred             HHHHHHHHHcCC-HHHHHHHHHHHHHHCCCcccc---HHHHHHHHHHHHhhc---cHHHHHHHHHHHHHHCCCCCcccHH
Confidence            345556666666 888999999999877654211   122333444444433   2334666677777787775   567


Q ss_pred             HHHHHHHHHHhcchHHHHHHHHHhcccCCCChh
Q 004468          444 HLYMSEALEQLCKYKEALDFAIAAQCLDPSNSV  476 (751)
Q Consensus       444 ~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~~  476 (751)
                      ++.++.++..+++..+|..++..+...+|....
T Consensus        79 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~  111 (119)
T TIGR02795        79 LLKLGMSLQELGDKEKAKATLQQVIKRYPGSSA  111 (119)
T ss_pred             HHHHHHHHHHhCChHHHHHHHHHHHHHCcCChh
Confidence            889999999999999999999999988886543

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=88.66  E-value=4.7  Score=32.34  Aligned_cols=91  Identities=25%  Similarity=0.194  Sum_probs=58.2

Q ss_pred             HhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcchHHHHHHHH
Q 004468          372 NSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEAL  451 (751)
Q Consensus       372 ~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~a~~~~~~~l  451 (751)
                      .....+. +..++..+..++...+..      ...+...+..+...   ++...|...+..++.+.|....+++.++.++
T Consensus         9 ~~~~~~~-~~~A~~~~~~~~~~~~~~------~~~~~~~~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~   78 (100)
T cd00189           9 LYYKLGD-YDEALEYYEKALELDPDN------ADAYYNLAAAYYKL---GKYEEALEDYEKALELDPDNAKAYYNLGLAY   78 (100)
T ss_pred             HHHHHhc-HHHHHHHHHHHHhcCCcc------HHHHHHHHHHHHHH---HHHHHHHHHHHHHHhCCCcchhHHHHHHHHH
Confidence            3333444 666777777776654432      12334444444443   3445667777777888888888888888888


Q ss_pred             HHhcchHHHHHHHHHhcccCC
Q 004468          452 EQLCKYKEALDFAIAAQCLDP  472 (751)
Q Consensus       452 ~~l~~~~~a~~~~~~~~~~~p  472 (751)
                      ...+.+.+|...+..+....|
T Consensus        79 ~~~~~~~~a~~~~~~~~~~~~   99 (100)
T cd00189          79 YKLGKYEEALEAYEKALELDP   99 (100)
T ss_pred             HHHHhHHHHHHHHHHHHccCC
Confidence            888888888877766555444

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=88.62  E-value=2.3  Score=47.51  Aligned_cols=91  Identities=18%  Similarity=0.094  Sum_probs=70.4

Q ss_pred             hcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcchHHHHHHHHHHh
Q 004468          375 EEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQL  454 (751)
Q Consensus       375 ~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~a~~~~~~~l~~l  454 (751)
                      ++|. +..||..|..+|...++.      ++.|+|-|-++...   |++-.|.+--.+|+.+.|+|..+...++....+.
T Consensus       298 eqG~-ldlAI~~Ykral~~~P~F------~~Ay~NlanALkd~---G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~  367 (966)
T KOG4626|consen  298 EQGL-LDLAIDTYKRALELQPNF------PDAYNNLANALKDK---GSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQ  367 (966)
T ss_pred             cccc-HHHHHHHHHHHHhcCCCc------hHHHhHHHHHHHhc---cchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh
Confidence            3444 667888999988866554      45788888887655   6778888888888999998888888888888888


Q ss_pred             cchHHHHHHHHHhcccCCCCh
Q 004468          455 CKYKEALDFAIAAQCLDPSNS  475 (751)
Q Consensus       455 ~~~~~a~~~~~~~~~~~p~~~  475 (751)
                      +++.+|..+.......||..+
T Consensus       368 ~~~e~A~~ly~~al~v~p~~a  388 (966)
T KOG4626|consen  368 GKIEEATRLYLKALEVFPEFA  388 (966)
T ss_pred             ccchHHHHHHHHHHhhChhhh
Confidence            888888877777777777654

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=87.79  E-value=0.46  Score=54.77  Aligned_cols=119  Identities=18%  Similarity=0.232  Sum_probs=74.4

Q ss_pred             EeccCCCcEEEEEECC-CCCEEEEEeCCCcEEEEeCC--CCeEEE----EecccCCcceEEEEEecCCC-CcEEEEEECC
Q 004468           45 ELEGHQGCVNAISWNS-KGSLLISGSDDTHINVWSYS--SRKLLH----SIETGHSANVFCTKFVPETS-DELVVSGAGD  116 (751)
Q Consensus        45 ~L~gH~~~V~~l~~s~-dg~~LaSgs~Dg~I~IWd~~--~~~~~~----~l~~~h~~~V~~v~fsp~s~-~~~l~sgs~D  116 (751)
                      .++|..|.|-.|.|-. +...++  -.-|.+.||++.  .|+...    +..+.....+.-|.|+|--. ..++..+-.+
T Consensus       127 l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~  204 (1283)
T KOG1916|consen  127 LAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKG  204 (1283)
T ss_pred             HHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCC
Confidence            3578889999999954 222222  344678999875  343222    22234455566777776421 3566667778


Q ss_pred             CcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEE-----------ecCCCCEEEEEeCCCcEEEEec
Q 004468          117 AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAV-----------EVGNPHVVWSASEDGTLRQHDF  177 (751)
Q Consensus       117 g~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~-----------sp~~~~~l~s~s~Dg~I~iwDl  177 (751)
                      ++|++-.+.+.           ....+.+|..++..++|           +| +|..|+++..||.++.|-+
T Consensus       205 ~~i~lL~~~ra-----------~~~l~rsHs~~~~d~a~~~~g~~~l~~lSp-DGtv~a~a~~dG~v~f~Qi  264 (1283)
T KOG1916|consen  205 GEIRLLNINRA-----------LRSLFRSHSQRVTDMAFFAEGVLKLASLSP-DGTVFAWAISDGSVGFYQI  264 (1283)
T ss_pred             CceeEeeechH-----------HHHHHHhcCCCcccHHHHhhchhhheeeCC-CCcEEEEeecCCccceeee
Confidence            89998888753           23556678887777665           45 5566666667776666644

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=87.51  E-value=5.8  Score=46.50  Aligned_cols=87  Identities=13%  Similarity=0.074  Sum_probs=52.0

Q ss_pred             hhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcchHHHHHHHHHHhcchHH
Q 004468          380 PYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKE  459 (751)
Q Consensus       380 ~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~a~~~~~~~l~~l~~~~~  459 (751)
                      +..++..+..++...+..      ...+..++.++...   |+.-.|+.+..+++.++|....+++.++.++..+|++.+
T Consensus       381 ~~eA~~~~~~al~~~p~~------~~~~~~lg~~~~~~---g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~e  451 (615)
T TIGR00990       381 PDKAEEDFDKALKLNSED------PDIYYHRAQLHFIK---GEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIAS  451 (615)
T ss_pred             HHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHc---CCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHH
Confidence            455555555555543322      23455555555432   344456666777777777777777777777777777777


Q ss_pred             HHHHHHHhcccCCCCh
Q 004468          460 ALDFAIAAQCLDPSNS  475 (751)
Q Consensus       460 a~~~~~~~~~~~p~~~  475 (751)
                      |+..+......+|...
T Consensus       452 A~~~~~~al~~~P~~~  467 (615)
T TIGR00990       452 SMATFRRCKKNFPEAP  467 (615)
T ss_pred             HHHHHHHHHHhCCCCh
Confidence            7766666666666543

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=87.13  E-value=10  Score=35.38  Aligned_cols=99  Identities=12%  Similarity=-0.122  Sum_probs=69.2

Q ss_pred             chhHHHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCC
Q 004468          361 GKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSS  440 (751)
Q Consensus       361 ~~~~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~  440 (751)
                      +....+-..+......|+ +..|...|.-....-+..      ...|-|-++.+-..+   +...|+.--..|..++|++
T Consensus        33 ~~l~~lY~~A~~ly~~G~-l~~A~~~f~~L~~~Dp~~------~~y~~gLG~~~Q~~g---~~~~AI~aY~~A~~L~~dd  102 (157)
T PRK15363         33 QPLNTLYRYAMQLMEVKE-FAGAARLFQLLTIYDAWS------FDYWFRLGECCQAQK---HWGEAIYAYGRAAQIKIDA  102 (157)
T ss_pred             HHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCccc------HHHHHHHHHHHHHHh---hHHHHHHHHHHHHhcCCCC
Confidence            344455566667777777 777888777655433222      234445555544333   3445666667789999999


Q ss_pred             cchHHHHHHHHHHhcchHHHHHHHHHhcc
Q 004468          441 FRAHLYMSEALEQLCKYKEALDFAIAAQC  469 (751)
Q Consensus       441 ~~a~~~~~~~l~~l~~~~~a~~~~~~~~~  469 (751)
                      +.++++.+.|++.+|+...|..++.....
T Consensus       103 p~~~~~ag~c~L~lG~~~~A~~aF~~Ai~  131 (157)
T PRK15363        103 PQAPWAAAECYLACDNVCYAIKALKAVVR  131 (157)
T ss_pred             chHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            99999999999999999999988876654

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=86.74  E-value=52  Score=39.65  Aligned_cols=91  Identities=8%  Similarity=0.088  Sum_probs=56.3

Q ss_pred             ccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCcccccccccc-ccCCccccceEEEEEcCCCCE
Q 004468          215 TLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHL-SEHGRSSLHLTHVTFSPNGEE  293 (751)
Q Consensus       215 ~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~vt~v~fspdg~~  293 (751)
                      ......++|+|.+...||+....|...|||+........-...     ..... .+++ ...... .....+.|.++-..
T Consensus       145 g~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~-----~~~~~-~gsi~~d~~e~-s~w~rI~W~~~~~~  217 (765)
T PF10214_consen  145 GFPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLR-----LSRNI-SGSIIFDPEEL-SNWKRILWVSDSNR  217 (765)
T ss_pred             CCccceEEeccCccceEEEEeccCcEEEEEeccccccCCccee-----eccCC-CccccCCCccc-CcceeeEecCCCCE
Confidence            3467789999988889999999999999999222111100000     00000 0111 110011 13668999999888


Q ss_pred             EEEEeCCCcEEEEECCCCCc
Q 004468          294 VLLSYSGEHVYLMDVNHAGG  313 (751)
Q Consensus       294 Ll~~s~d~~I~lwdl~~~~~  313 (751)
                      |+++.. ..+.++|+.+...
T Consensus       218 lLv~~r-~~l~~~d~~~~~~  236 (765)
T PF10214_consen  218 LLVCNR-SKLMLIDFESNWQ  236 (765)
T ss_pred             EEEEcC-CceEEEECCCCCc
Confidence            888765 4789999988654

These proteins are found in fungi.

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=86.40  E-value=7.6  Score=42.56  Aligned_cols=58  Identities=10%  Similarity=0.035  Sum_probs=46.8

Q ss_pred             hhccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCc
Q 004468           36 LVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSA   94 (751)
Q Consensus        36 ~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~   94 (751)
                      ....+.....|......+.+|..+|++++.|+...=|.|.|+|+.++..++-. +|..+
T Consensus       293 ~~~~l~~r~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmW-KGYRd  350 (415)
T PF14655_consen  293 PAAPLPMRFGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMW-KGYRD  350 (415)
T ss_pred             CCcccceEEeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhh-ccCcc
Confidence            34455667778888889999999999999999888899999999988777665 55443

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=86.38  E-value=0.86  Score=48.42  Aligned_cols=91  Identities=13%  Similarity=0.017  Sum_probs=69.9

Q ss_pred             HHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcchH
Q 004468          365 MLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAH  444 (751)
Q Consensus       365 ~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~a~  444 (751)
                      .+...++....... |.-++..|+.+|...+.+      ..-|.|||+.+|.-.-   .-.|+.|....+++++..+++|
T Consensus        51 ~~k~~gn~~yk~k~-Y~nal~~yt~Ai~~~pd~------a~yy~nRAa~~m~~~~---~~~a~~dar~~~r~kd~~~k~~  120 (486)
T KOG0550|consen   51 EAKEEGNAFYKQKT-YGNALKNYTFAIDMCPDN------ASYYSNRAATLMMLGR---FEEALGDARQSVRLKDGFSKGQ  120 (486)
T ss_pred             HHHhhcchHHHHhh-HHHHHHHHHHHHHhCccc------hhhhchhHHHHHHHHh---HhhcccchhhheecCCCccccc
Confidence            33444444444434 778888999999888776      4578999999986543   4568889999999999999999


Q ss_pred             HHHHHHHHHhcchHHHHHHHH
Q 004468          445 LYMSEALEQLCKYKEALDFAI  465 (751)
Q Consensus       445 ~~~~~~l~~l~~~~~a~~~~~  465 (751)
                      .|..+|-..++-..+|...+.
T Consensus       121 ~r~~~c~~a~~~~i~A~~~~~  141 (486)
T KOG0550|consen  121 LREGQCHLALSDLIEAEEKLK  141 (486)
T ss_pred             cchhhhhhhhHHHHHHHHHhh
Confidence            999999999987777765443

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=86.23  E-value=45  Score=34.62  Aligned_cols=230  Identities=10%  Similarity=0.053  Sum_probs=118.6

Q ss_pred             cEEEEEECCCCCEEEEEeCCCcEEEEeCC-------CCeEEEEecc--c--CCcceEEEEEecCC----------CCcEE
Q 004468           52 CVNAISWNSKGSLLISGSDDTHINVWSYS-------SRKLLHSIET--G--HSANVFCTKFVPET----------SDELV  110 (751)
Q Consensus        52 ~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~-------~~~~~~~l~~--~--h~~~V~~v~fsp~s----------~~~~l  110 (751)
                      --|.|+++|.+.+-++...-+...+||..       ...++.++..  +  -....+.+.|+..+          ....+
T Consensus        24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F  103 (336)
T TIGR03118        24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF  103 (336)
T ss_pred             ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence            35689999999999999899999999986       1223334421  1  23457777777542          01236


Q ss_pred             EEEECCCcEEEEECCCCCCCCCCCCCCCCceeec-ccCCce-eEEEEecC--CCCEEEEEeCCCcEEEEecCCCCCCCCC
Q 004468          111 VSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQ-CHTRRV-KKLAVEVG--NPHVVWSASEDGTLRQHDFRQGSSCPPA  186 (751)
Q Consensus       111 ~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~-~h~~~V-~~l~~sp~--~~~~l~s~s~Dg~I~iwDlr~~~~~~~~  186 (751)
                      +.++.||+|.=|..........     .....+. .-...| +.+++...  +..+.++--..++|.+||-.-...... 
T Consensus       104 if~tEdGTisaW~p~v~~t~~~-----~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~-  177 (336)
T TIGR03118       104 LFVTEDGTLSGWAPALGTTRMT-----RAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLP-  177 (336)
T ss_pred             EEEeCCceEEeecCcCCccccc-----ccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCC-
Confidence            7788999999999654321000     0112222 112333 56776642  233444445689999998654432100 


Q ss_pred             CCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCcccc
Q 004468          187 GSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNY  266 (751)
Q Consensus       187 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~  266 (751)
                        .......+-.....-.   +.. -+....|+-..-.+. .+.=+.|..-|.|-+||+.- ..             ++.
T Consensus       178 --g~F~DP~iPagyAPFn---Iqn-ig~~lyVtYA~qd~~-~~d~v~G~G~G~VdvFd~~G-~l-------------~~r  236 (336)
T TIGR03118       178 --GSFIDPALPAGYAPFN---VQN-LGGTLYVTYAQQDAD-RNDEVAGAGLGYVNVFTLNG-QL-------------LRR  236 (336)
T ss_pred             --CCccCCCCCCCCCCcc---eEE-ECCeEEEEEEecCCc-ccccccCCCcceEEEEcCCC-cE-------------EEE
Confidence              0000000000000000   000 001111222222231 22334445567888888752 11             221


Q ss_pred             ccccccccCCccccceEEEEEcC------CCCEEEEEeCCCcEEEEECCCCCcc
Q 004468          267 FCPMHLSEHGRSSLHLTHVTFSP------NGEEVLLSYSGEHVYLMDVNHAGGR  314 (751)
Q Consensus       267 ~~~~~~~~~g~~~~~vt~v~fsp------dg~~Ll~~s~d~~I~lwdl~~~~~~  314 (751)
                      +..     .+.-+ ..+.|+..|      .|..|+-.-.||+|..||..++...
T Consensus       237 ~as-----~g~LN-aPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~  284 (336)
T TIGR03118       237 VAS-----SGRLN-APWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQL  284 (336)
T ss_pred             ecc-----CCccc-CCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCcee
Confidence            211     11111 256666655      5677777788999999999886533

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=86.18  E-value=2.9  Score=29.57  Aligned_cols=32  Identities=19%  Similarity=0.362  Sum_probs=27.0

Q ss_pred             CcEEEEEECCC-C--CEEEEEeCCCcEEEEeCCCC
Q 004468           51 GCVNAISWNSK-G--SLLISGSDDTHINVWSYSSR   82 (751)
Q Consensus        51 ~~V~~l~~s~d-g--~~LaSgs~Dg~I~IWd~~~~   82 (751)
                      |.|.+++|+|. +  .+||-+-.-+.|.|+|+.++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~   35 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN   35 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence            57899999984 4  59998888899999999854

It contains a characteristic DLL sequence motif.

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=86.09  E-value=4.7  Score=44.23  Aligned_cols=98  Identities=11%  Similarity=0.106  Sum_probs=59.8

Q ss_pred             ccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCC---
Q 004468          215 TLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNG---  291 (751)
Q Consensus       215 ~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg---  291 (751)
                      ...|..+..++. |..++..+.+|.+.++=.+..-+-..+........|-..-....+... .....+..++|+|+.   
T Consensus       103 ~feV~~vl~s~~-GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~fts-s~~ltl~Qa~WHP~S~~D  180 (741)
T KOG4460|consen  103 LFEVYQVLLSPT-GSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTS-STSLTLKQAAWHPSSILD  180 (741)
T ss_pred             eEEEEEEEecCC-CceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeecc-CCceeeeeccccCCccCC
Confidence            457888999995 788888889998877654332222222222111122111111111111 123357789999976   


Q ss_pred             CEEEEEeCCCcEEEEECCCCCcc
Q 004468          292 EEVLLSYSGEHVYLMDVNHAGGR  314 (751)
Q Consensus       292 ~~Ll~~s~d~~I~lwdl~~~~~~  314 (751)
                      ..|++-++|+.|+|||+......
T Consensus       181 ~hL~iL~sdnviRiy~lS~~tel  203 (741)
T KOG4460|consen  181 PHLVLLTSDNVIRIYSLSEPTEL  203 (741)
T ss_pred             ceEEEEecCcEEEEEecCCcchh
Confidence            68899999999999999885433

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=85.35  E-value=4  Score=37.62  Aligned_cols=102  Identities=25%  Similarity=0.122  Sum_probs=60.2

Q ss_pred             HHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhh------------hhHhHHHHHhhcc-cccchhhhHHHhhHH
Q 004468          366 LVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRH------------ECLCIRAALLLKR-KWKNDAQMAIRDCYN  432 (751)
Q Consensus       366 l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~------------~~~~~ra~~~~~r-~w~~d~y~al~d~~~  432 (751)
                      +...+......+. ...++..+.+++..+....-+.+..            ..|......+... .=.|+.-.|++.|..
T Consensus         9 ~~~~a~~~~~~~~-~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~   87 (146)
T PF03704_consen    9 LVREARAAARAGD-PEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQR   87 (146)
T ss_dssp             HHHHHHHHHHTT--HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHCCC-HHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence            3333444444443 4566777777777665543333221            1111111111110 114456678899999


Q ss_pred             HhcCCCCCcchHHHHHHHHHHhcchHHHHHHHHHhc
Q 004468          433 ARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQ  468 (751)
Q Consensus       433 a~~~~~~~~~a~~~~~~~l~~l~~~~~a~~~~~~~~  468 (751)
                      ++.+||.+-.+|..+++++...|+..+|+.......
T Consensus        88 ~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~  123 (146)
T PF03704_consen   88 ALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYR  123 (146)
T ss_dssp             HHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence            999999999999999999999999999998776443

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=85.20  E-value=2.4  Score=42.27  Aligned_cols=54  Identities=17%  Similarity=0.356  Sum_probs=39.3

Q ss_pred             eeccCCCCEEEEccCCCcEEEEecCC--------------------------eeeeeeccCCCceEEEEecCCceEEecC
Q 004468          633 SFLGQRGDYIASGSDDGRWFIWEKQT--------------------------VVNCVQCHPFDCVVATSGIDNTIKIWTP  686 (751)
Q Consensus       633 ~~~~~~~~~v~sgs~dg~~~iW~~~~--------------------------~v~~v~~~p~~~~las~~~d~~v~~W~~  686 (751)
                      +|+..++.||++-..+|.+||||+.+                          .|..+..+.+|.-|++-+. +....|++
T Consensus        16 ~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsn-g~~y~y~~   94 (219)
T PF07569_consen   16 SFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSN-GDSYSYSP   94 (219)
T ss_pred             EEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeC-CCEEEecc
Confidence            46677899999999999999999877                          2344566667754555543 55677776


Q ss_pred             C
Q 004468          687 S  687 (751)
Q Consensus       687 ~  687 (751)
                      .
T Consensus        95 ~   95 (219)
T PF07569_consen   95 D   95 (219)
T ss_pred             c
Confidence            4

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=85.05  E-value=4.8  Score=48.15  Aligned_cols=116  Identities=8%  Similarity=0.001  Sum_probs=76.2

Q ss_pred             cEEEEEECCCCCEEEE--EeCCCcEEEEeCCCCe--------EEEEec--ccCCcceEEEEEecCCCCcEEEEEECCCcE
Q 004468           52 CVNAISWNSKGSLLIS--GSDDTHINVWSYSSRK--------LLHSIE--TGHSANVFCTKFVPETSDELVVSGAGDAEV  119 (751)
Q Consensus        52 ~V~~l~~s~dg~~LaS--gs~Dg~I~IWd~~~~~--------~~~~l~--~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V  119 (751)
                      .|..+..++|++..+.  .+.+-.|..+|+.+-.        ++..-.  .....-..++.|.|.- ....+.+..|+.|
T Consensus       102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~v-p~n~av~l~dlsl  180 (1405)
T KOG3630|consen  102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLV-PLNSAVDLSDLSL  180 (1405)
T ss_pred             cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCc-cchhhhhccccch
Confidence            5666677778775544  3445578889986421        111111  1223445688899985 4567777889999


Q ss_pred             EEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCC
Q 004468          120 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQ  179 (751)
Q Consensus       120 ~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~  179 (751)
                      +|.-+......         ...+ .-...+++++|+| .+..++.|-..|++.+|-..-
T Consensus       181 ~V~~~~~~~~~---------v~s~-p~t~~~Tav~WSp-rGKQl~iG~nnGt~vQy~P~l  229 (1405)
T KOG3630|consen  181 RVKSTKQLAQN---------VTSF-PVTNSQTAVLWSP-RGKQLFIGRNNGTEVQYEPSL  229 (1405)
T ss_pred             hhhhhhhhhhh---------hccc-CcccceeeEEecc-ccceeeEecCCCeEEEeeccc
Confidence            99888743111         1111 2456789999999 678888999999999997543

>PRK13616 lipoprotein LpqB; Provisional

Probab=85.01  E-value=26  Score=40.60  Aligned_cols=117  Identities=11%  Similarity=0.036  Sum_probs=62.1

Q ss_pred             EEEEEECCCCCEEEEEeCC-CcEEEEeCCCCeEEEEe--c-----ccCCcceEEEEEecCCCCcEEEEEECCCcEEEEEC
Q 004468           53 VNAISWNSKGSLLISGSDD-THINVWSYSSRKLLHSI--E-----TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNL  124 (751)
Q Consensus        53 V~~l~~s~dg~~LaSgs~D-g~I~IWd~~~~~~~~~l--~-----~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~  124 (751)
                      ...-.|+|+|+.|++.++. ..+++.+......+..+  .     ....+.|..++|+|+  |..|+... ++.|.|=-+
T Consensus       399 ~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~~~~g~Issl~wSpD--G~RiA~i~-~g~v~Va~V  475 (591)
T PRK13616        399 LTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVASRVPGPISELQLSRD--GVRAAMII-GGKVYLAVV  475 (591)
T ss_pred             CCCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhhccCCCcCeEEECCC--CCEEEEEE-CCEEEEEEE
Confidence            6788999999988887643 22333332211122111  0     023567999999999  77777554 477776433


Q ss_pred             CCC-CCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEec
Q 004468          125 SRF-SGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDF  177 (751)
Q Consensus       125 ~~~-~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDl  177 (751)
                      ... .+.. ..  ..+......-...+.++.|.. ++.++ .+..++...+|.+
T Consensus       476 vr~~~G~~-~l--~~~~~l~~~l~~~~~~l~W~~-~~~L~-V~~~~~~~~v~~v  524 (591)
T PRK13616        476 EQTEDGQY-AL--TNPREVGPGLGDTAVSLDWRT-GDSLV-VGRSDPEHPVWYV  524 (591)
T ss_pred             EeCCCCce-ee--cccEEeecccCCccccceEec-CCEEE-EEecCCCCceEEE
Confidence            321 1210 00  011112223344468899998 44554 5554444444443

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=84.98  E-value=18  Score=37.21  Aligned_cols=124  Identities=19%  Similarity=0.062  Sum_probs=80.6

Q ss_pred             CcchhHHHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCC
Q 004468          359 GLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDS  438 (751)
Q Consensus       359 ~~~~~~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~  438 (751)
                      .|...+.-.-.+...+..+. +..|..+|..++...+++      ...+..-|.+++-..=..+.-.+-.=-.+++.+||
T Consensus       152 nP~d~egW~~Lg~~ym~~~~-~~~A~~AY~~A~rL~g~n------~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~  224 (287)
T COG4235         152 NPGDAEGWDLLGRAYMALGR-ASDALLAYRNALRLAGDN------PEILLGLAEALYYQAGQQMTAKARALLRQALALDP  224 (287)
T ss_pred             CCCCchhHHHHHHHHHHhcc-hhHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCC
Confidence            44444444444555555555 778889999998877665      23334334444322211111222222567899999


Q ss_pred             CCcchHHHHHHHHHHhcchHHHHHHHHHhcccCCCChhhhHHHHHHHHHHHHHH
Q 004468          439 SSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHIAAAE  492 (751)
Q Consensus       439 ~~~~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~  492 (751)
                      .++++.++++...++-|++++|....+.+....|....   ....+.+.|..+.
T Consensus       225 ~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~---rr~~ie~~ia~~~  275 (287)
T COG4235         225 ANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP---RRSLIERSIARAL  275 (287)
T ss_pred             ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc---hHHHHHHHHHHHH
Confidence            99999999999999999999999999998888887654   3444455554443

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=84.95  E-value=19  Score=40.45  Aligned_cols=157  Identities=10%  Similarity=0.147  Sum_probs=85.4

Q ss_pred             CcEEEEEECCCCC-EEEEEe--CCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCC--CcEEEEEECCCcEEEEECC
Q 004468           51 GCVNAISWNSKGS-LLISGS--DDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETS--DELVVSGAGDAEVRLFNLS  125 (751)
Q Consensus        51 ~~V~~l~~s~dg~-~LaSgs--~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~--~~~l~sgs~Dg~V~vwd~~  125 (751)
                      .+|..++|. ||+ .++|.=  ..|.++.=   +-+.+.+|     ..|..+.|.|...  -..|+..-....|.||-+.
T Consensus        20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfG---ds~viGqF-----EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~   90 (671)
T PF15390_consen   20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFG---DSKVIGQF-----EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLC   90 (671)
T ss_pred             ccccceEec-CCCEEEEEeeeeeCCccccC---CccEeecc-----ceeeeeeecCcccCCCCceEEEeccceEEEEEec
Confidence            478899998 555 444431  12222221   12234344     5589999998721  1245555677899999997


Q ss_pred             CCCCCCCCCCCCCCceeecccC---Cc--eeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEec
Q 004468          126 RFSGRGLDDNAITPSALYQCHT---RR--VKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDL  200 (751)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~h~---~~--V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~  200 (751)
                      ......     .+.+....++-   .+  -..+.|+| ...+|+.-.....-.+++++...            ..+..|.
T Consensus        91 ~s~~e~-----~K~l~sQtcEi~e~~pvLpQGCVWHP-k~~iL~VLT~~dvSV~~sV~~d~------------srVkaDi  152 (671)
T PF15390_consen   91 PSTTER-----NKLLMSQTCEIREPFPVLPQGCVWHP-KKAILTVLTARDVSVLPSVHCDS------------SRVKADI  152 (671)
T ss_pred             cCcccc-----ccceeeeeeeccCCcccCCCcccccC-CCceEEEEecCceeEeeeeeeCC------------ceEEEec
Confidence            432111     12222222221   11  24577999 44555444433333356665433            1233333


Q ss_pred             ccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCC
Q 004468          201 RCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRR  246 (751)
Q Consensus       201 ~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~  246 (751)
                      .            ..+.|.|.+|.+++.+++++.++-=.-+|||-.
T Consensus       153 ~------------~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~  186 (671)
T PF15390_consen  153 K------------TSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA  186 (671)
T ss_pred             c------------CCceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence            2            356799999999765555555665566789854

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=84.89  E-value=11  Score=42.19  Aligned_cols=120  Identities=15%  Similarity=0.090  Sum_probs=72.0

Q ss_pred             CCCcEEEEEECCC----CCEEEEEeCCCcEEEEeCC-----CCeEEEEecccCC---c--ceEEEEEecCCCCcEEEEEE
Q 004468           49 HQGCVNAISWNSK----GSLLISGSDDTHINVWSYS-----SRKLLHSIETGHS---A--NVFCTKFVPETSDELVVSGA  114 (751)
Q Consensus        49 H~~~V~~l~~s~d----g~~LaSgs~Dg~I~IWd~~-----~~~~~~~l~~~h~---~--~V~~v~fsp~s~~~~l~sgs  114 (751)
                      .-..|..+.|.|-    ..-|++..-.+.|.||-+.     +.+.+..- +.+-   -  --..+-|+|.  ...|+.-.
T Consensus        55 qFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQ-tcEi~e~~pvLpQGCVWHPk--~~iL~VLT  131 (671)
T PF15390_consen   55 QFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQ-TCEIREPFPVLPQGCVWHPK--KAILTVLT  131 (671)
T ss_pred             ccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeee-eeeccCCcccCCCcccccCC--CceEEEEe
Confidence            3456889999984    3244444556799999864     23332221 1111   1  1235679999  46666544


Q ss_pred             CCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCC
Q 004468          115 GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQG  180 (751)
Q Consensus       115 ~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~  180 (751)
                      ....-.++++.....         .++.--.-.+.|.|.+|.+++.++++..+..=.-++||-...
T Consensus       132 ~~dvSV~~sV~~d~s---------rVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qK  188 (671)
T PF15390_consen  132 ARDVSVLPSVHCDSS---------RVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQK  188 (671)
T ss_pred             cCceeEeeeeeeCCc---------eEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCchh
Confidence            444445666664321         122222457889999999977777766666566778985543

>PRK10115 protease 2; Provisional

Probab=84.66  E-value=94  Score=36.92  Aligned_cols=72  Identities=3%  Similarity=-0.010  Sum_probs=45.7

Q ss_pred             cEEEEEECCCCCEEEEEe-----CCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECC-----CcEEE
Q 004468           52 CVNAISWNSKGSLLISGS-----DDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD-----AEVRL  121 (751)
Q Consensus        52 ~V~~l~~s~dg~~LaSgs-----~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~D-----g~V~v  121 (751)
                      .+..+.|+|||++||-+.     ....|+|-|+.++..+.....+ .  -..++|.++. ..++++.-.+     ..|..
T Consensus       128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~-~--~~~~~w~~D~-~~~~y~~~~~~~~~~~~v~~  203 (686)
T PRK10115        128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDN-V--EPSFVWANDS-WTFYYVRKHPVTLLPYQVWR  203 (686)
T ss_pred             EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccC-c--ceEEEEeeCC-CEEEEEEecCCCCCCCEEEE
Confidence            466789999999888653     2334888899888644333122 1  2569999983 2344444322     35777


Q ss_pred             EECCCC
Q 004468          122 FNLSRF  127 (751)
Q Consensus       122 wd~~~~  127 (751)
                      |++.+.
T Consensus       204 h~lgt~  209 (686)
T PRK10115        204 HTIGTP  209 (686)
T ss_pred             EECCCC
Confidence            788764

>PRK11189 lipoprotein NlpI; Provisional

Probab=84.63  E-value=4  Score=42.90  Aligned_cols=90  Identities=18%  Similarity=0.075  Sum_probs=71.4

Q ss_pred             HHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcchHHHHHHHHHHhcchHHHH
Q 004468          382 YGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEAL  461 (751)
Q Consensus       382 ~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~a~~~~~~~l~~l~~~~~a~  461 (751)
                      .+|..++++|...+.  .+......|.+|+..+...+   +...|+.+..+++.++|.++.+++.++..+..+|++.+|.
T Consensus        44 ~~i~~~~~~l~~~~~--~~~~~a~~~~~~g~~~~~~g---~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~  118 (296)
T PRK11189         44 VILARLNQILASRDL--TDEERAQLHYERGVLYDSLG---LRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAY  118 (296)
T ss_pred             HHHHHHHHHHccccC--CcHhhHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence            456677778765432  23333456778888877654   3557888899999999999999999999999999999999


Q ss_pred             HHHHHhcccCCCChh
Q 004468          462 DFAIAAQCLDPSNSV  476 (751)
Q Consensus       462 ~~~~~~~~~~p~~~~  476 (751)
                      ..+.......|.+..
T Consensus       119 ~~~~~Al~l~P~~~~  133 (296)
T PRK11189        119 EAFDSVLELDPTYNY  133 (296)
T ss_pred             HHHHHHHHhCCCCHH
Confidence            999999988897653

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=84.58  E-value=10  Score=44.67  Aligned_cols=94  Identities=10%  Similarity=-0.020  Sum_probs=72.4

Q ss_pred             hhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcchHHHHHHHHH
Q 004468          373 SLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALE  452 (751)
Q Consensus       373 ~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~a~~~~~~~l~  452 (751)
                      ....|. +-.+...+..++...+..      ...+.++|..+.+.+-   .-.|+.-+..++..+|.+..+++.++.+|.
T Consensus        96 ~~~~g~-~~ea~~~l~~~~~~~Pd~------~~a~~~~a~~L~~~~~---~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~  165 (694)
T PRK15179         96 LEAAHR-SDEGLAVWRGIHQRFPDS------SEAFILMLRGVKRQQG---IEAGRAEIELYFSGGSSSAREILLEAKSWD  165 (694)
T ss_pred             HHHcCC-cHHHHHHHHHHHhhCCCc------HHHHHHHHHHHHHhcc---HHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence            333444 555666666777666554      3355677777776665   556889999999999999999999999999


Q ss_pred             HhcchHHHHHHHHHhcccCCCChh
Q 004468          453 QLCKYKEALDFAIAAQCLDPSNSV  476 (751)
Q Consensus       453 ~l~~~~~a~~~~~~~~~~~p~~~~  476 (751)
                      ++|++.+|.++.+++....|...+
T Consensus       166 ~~g~~~~A~~~y~~~~~~~p~~~~  189 (694)
T PRK15179        166 EIGQSEQADACFERLSRQHPEFEN  189 (694)
T ss_pred             HhcchHHHHHHHHHHHhcCCCcHH
Confidence            999999999999998877776553

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=84.35  E-value=24  Score=41.23  Aligned_cols=160  Identities=10%  Similarity=0.084  Sum_probs=93.8

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCeEEE------Eecc---------------cCCcceEEEEEecCCCCcEEEEEECCCcEE
Q 004468           62 GSLLISGSDDTHINVWSYSSRKLLH------SIET---------------GHSANVFCTKFVPETSDELVVSGAGDAEVR  120 (751)
Q Consensus        62 g~~LaSgs~Dg~I~IWd~~~~~~~~------~l~~---------------~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~  120 (751)
                      .++|..|. .+.|.||++..-....      .+..               .-...|+-+...--.+...|+.|..||.|.
T Consensus        49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~  127 (717)
T PF08728_consen   49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVL  127 (717)
T ss_pred             CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEE
Confidence            66777765 5689999975322211      1100               011224445444333357899999999999


Q ss_pred             EEECCCCC-----C-CC----CCCCCCCCceeecccCCceeEEEEe--cCCCCEEEEEeCCCcEEEEecCCCCCCCCCCC
Q 004468          121 LFNLSRFS-----G-RG----LDDNAITPSALYQCHTRRVKKLAVE--VGNPHVVWSASEDGTLRQHDFRQGSSCPPAGS  188 (751)
Q Consensus       121 vwd~~~~~-----~-~~----~~~~~~~~~~~~~~h~~~V~~l~~s--p~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~  188 (751)
                      +|.++.-.     . ..    ......+|...+. -...+++++++  . ..++||.++.-..|.+|-+........   
T Consensus       128 ~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~-~~rlIAVSsNs~~VTVFaf~l~~~r~~---  202 (717)
T PF08728_consen  128 AYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYK-KSRLIAVSSNSQEVTVFAFALVDERFY---  202 (717)
T ss_pred             EEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecC-cceEEEEecCCceEEEEEEeccccccc---
Confidence            99774210     0 00    0001123443333 34578999997  5 567888888888888886654311000   


Q ss_pred             CCCccceEEEecccCceecccCCCCCccceEEEEEeCCC--Cc---EEEEEeCCCeEEEEeCC
Q 004468          189 SHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR--PH---LLLVGGSDAFARLYDRR  246 (751)
Q Consensus       189 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~--~~---~l~sgs~D~~IriwD~~  246 (751)
                                         ......+...|.+|+|-+++  +.   .+++++-.|.+.+|++.
T Consensus       203 -------------------~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~  246 (717)
T PF08728_consen  203 -------------------HVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK  246 (717)
T ss_pred             -------------------cccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence                               00001144567888887753  22   78889999999999883

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=84.30  E-value=12  Score=43.46  Aligned_cols=117  Identities=13%  Similarity=0.157  Sum_probs=78.3

Q ss_pred             cEEEEEECC--CCCEEEEEeCCCcEEEEeCCC-------C----eE-------EEEecccCCcceEEEEEe--cCCCCcE
Q 004468           52 CVNAISWNS--KGSLLISGSDDTHINVWSYSS-------R----KL-------LHSIETGHSANVFCTKFV--PETSDEL  109 (751)
Q Consensus        52 ~V~~l~~s~--dg~~LaSgs~Dg~I~IWd~~~-------~----~~-------~~~l~~~h~~~V~~v~fs--p~s~~~~  109 (751)
                      .||.|....  +...|+.|.+||.|.+|.+++       .    ..       ...+...-...+++++++  ..  .++
T Consensus       102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~--~rl  179 (717)
T PF08728_consen  102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKK--SRL  179 (717)
T ss_pred             eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCc--ceE
Confidence            577776654  456999999999999996521       0    00       001111234578999998  65  588


Q ss_pred             EEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCC----CC-EEEEEeCCCcEEEEec
Q 004468          110 VVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGN----PH-VVWSASEDGTLRQHDF  177 (751)
Q Consensus       110 l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~----~~-~l~s~s~Dg~I~iwDl  177 (751)
                      ||.++.-..|.||-......+..       ...-..|...|-+|+|-+++    ++ .+++++-.|.+.+|++
T Consensus       180 IAVSsNs~~VTVFaf~l~~~r~~-------~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  180 IAVSSNSQEVTVFAFALVDERFY-------HVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EEEecCCceEEEEEEeccccccc-------cccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            89998889999987765322211       11111267778899998743    22 7778899999999988

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=84.15  E-value=2  Score=33.69  Aligned_cols=65  Identities=18%  Similarity=0.146  Sum_probs=50.4

Q ss_pred             HHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCC
Q 004468          365 MLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDS  438 (751)
Q Consensus       365 ~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~  438 (751)
                      .+...|...+..++ |..|+..|.++|...+..      ...|.+++.+++..+=  +--.|+.++.++++++|
T Consensus         5 ~~~~~g~~~~~~~~-~~~A~~~~~~ai~~~p~~------~~~~~~~g~~~~~~~~--~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    5 AWYNLGQIYFQQGD-YEEAIEYFEKAIELDPNN------AEAYYNLGLAYMKLGK--DYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             HHHHHHHHHHHTTH-HHHHHHHHHHHHHHSTTH------HHHHHHHHHHHHHTTT--HHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHhCc--cHHHHHHHHHHHHHcCc
Confidence            34556677777777 889999999999976554      4588999999998861  24468899999998887

...

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=84.13  E-value=1.5  Score=28.73  Aligned_cols=32  Identities=38%  Similarity=0.575  Sum_probs=27.4

Q ss_pred             chHHHHHHHHHHhcchHHHHHHHHHhcccCCC
Q 004468          442 RAHLYMSEALEQLCKYKEALDFAIAAQCLDPS  473 (751)
Q Consensus       442 ~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~  473 (751)
                      ++++.++.++..++++++|+.+.+++....|.
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~   33 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN   33 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence            57889999999999999999999988877774

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=83.72  E-value=3.9  Score=45.80  Aligned_cols=99  Identities=16%  Similarity=0.062  Sum_probs=78.3

Q ss_pred             hhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcchHHHHHHHHHHhcchHH
Q 004468          380 PYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKE  459 (751)
Q Consensus       380 ~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~a~~~~~~~l~~l~~~~~  459 (751)
                      |..|+..|..++...++.      ...|+|-|..|-.+   |++-+|+.--.+|+.++|+.+.|+-.|+-||-.+|+..|
T Consensus       268 ~d~Avs~Y~rAl~lrpn~------A~a~gNla~iYyeq---G~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~e  338 (966)
T KOG4626|consen  268 FDRAVSCYLRALNLRPNH------AVAHGNLACIYYEQ---GLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTE  338 (966)
T ss_pred             chHHHHHHHHHHhcCCcc------hhhccceEEEEecc---ccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHH
Confidence            677888888888765543      34556666555554   458899999999999999999999999999999999999


Q ss_pred             HHHHHHHhcccCCCChhhhHHHHHHHHH
Q 004468          460 ALDFAIAAQCLDPSNSVMAEKVENIKKH  487 (751)
Q Consensus       460 a~~~~~~~~~~~p~~~~~~~~~~~~~~~  487 (751)
                      |..|..+..+.-|.++.....+..+.+.
T Consensus       339 a~~cYnkaL~l~p~hadam~NLgni~~E  366 (966)
T KOG4626|consen  339 AVDCYNKALRLCPNHADAMNNLGNIYRE  366 (966)
T ss_pred             HHHHHHHHHHhCCccHHHHHHHHHHHHH
Confidence            9999999998889887655555444443

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=83.60  E-value=4.8  Score=40.82  Aligned_cols=96  Identities=17%  Similarity=0.058  Sum_probs=75.0

Q ss_pred             HHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHH-------hcCCC
Q 004468          366 LVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNA-------RRIDS  438 (751)
Q Consensus       366 l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a-------~~~~~  438 (751)
                      +-..+-..+-.|. |..|...+...|..++++...+             --+-|-|..+.+-.||..|       .+-.|
T Consensus       144 ~Y~~A~~~~ksgd-y~~A~~~F~~fi~~YP~s~~~~-------------nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P  209 (262)
T COG1729         144 LYNAALDLYKSGD-YAEAEQAFQAFIKKYPNSTYTP-------------NAYYWLGESLYAQGDYEDAAYIFARVVKDYP  209 (262)
T ss_pred             HHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCcccc-------------hhHHHHHHHHHhcccchHHHHHHHHHHHhCC
Confidence            5566777777888 9999999999999999873211             1234778888887777666       34555


Q ss_pred             CCcc---hHHHHHHHHHHhcchHHHHHHHHHhcccCCCCh
Q 004468          439 SSFR---AHLYMSEALEQLCKYKEALDFAIAAQCLDPSNS  475 (751)
Q Consensus       439 ~~~~---a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~  475 (751)
                      .++|   +.+.++.|+..+++-.+|...+.++..+||...
T Consensus       210 ~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~  249 (262)
T COG1729         210 KSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTD  249 (262)
T ss_pred             CCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCH
Confidence            5555   589999999999999999999999999999654

>PHA03098 kelch-like protein; Provisional

Probab=83.57  E-value=28  Score=39.90  Aligned_cols=64  Identities=16%  Similarity=0.172  Sum_probs=33.9

Q ss_pred             CCCEEEEEeCC-----CcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECC------CcEEEEECCCC
Q 004468           61 KGSLLISGSDD-----THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD------AEVRLFNLSRF  127 (751)
Q Consensus        61 dg~~LaSgs~D-----g~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~D------g~V~vwd~~~~  127 (751)
                      ++++.+.||.+     ..+..||+.+.+....-...+...-.+++.. +  +.+++.||.+      ..+..||+.+.
T Consensus       342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~-~--~~iYv~GG~~~~~~~~~~v~~yd~~t~  416 (534)
T PHA03098        342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNV-N--NLIYVIGGISKNDELLKTVECFSLNTN  416 (534)
T ss_pred             CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEE-C--CEEEEECCcCCCCcccceEEEEeCCCC
Confidence            56777888765     3466788776543221101111111222222 3  5777777632      45788888754

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=83.39  E-value=3.8  Score=37.87  Aligned_cols=66  Identities=23%  Similarity=0.181  Sum_probs=54.4

Q ss_pred             HHHHHhhcccccchhhhHHHhhHHHhcCCCCCcchHHHHHHHHHHhcchHHHHHHHHHhcccCCCChhh
Q 004468          409 IRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVM  477 (751)
Q Consensus       409 ~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~~~  477 (751)
                      +++.++...   |+.-.|+..+..++.++|.+..+++.++.++..+|++.+|..+........|.+...
T Consensus        29 ~~g~~~~~~---g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a   94 (144)
T PRK15359         29 ASGYASWQE---GDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEP   94 (144)
T ss_pred             HHHHHHHHc---CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHH
Confidence            444444443   334568888999999999999999999999999999999999999999888877543

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=83.10  E-value=6.3  Score=41.09  Aligned_cols=111  Identities=14%  Similarity=0.158  Sum_probs=88.5

Q ss_pred             ccCcchhHHHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcC
Q 004468          357 ATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRI  436 (751)
Q Consensus       357 ~~~~~~~~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~  436 (751)
                      +..+..++...+.++..+..++ |..|+-.|-.+|.+-+++      ...+..||+.|+--+-   .-+|+.|-.+.+++
T Consensus        32 ~~~~advekhlElGk~lla~~Q-~sDALt~yHaAve~dp~~------Y~aifrRaT~yLAmGk---sk~al~Dl~rVlel  101 (504)
T KOG0624|consen   32 TASPADVEKHLELGKELLARGQ-LSDALTHYHAAVEGDPNN------YQAIFRRATVYLAMGK---SKAALQDLSRVLEL  101 (504)
T ss_pred             cCCHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHcCCchh------HHHHHHHHHHHhhhcC---CccchhhHHHHHhc
Confidence            4466677888888999999999 888899999999876554      3455678877775432   45789999999999


Q ss_pred             CCCCcchHHHHHHHHHHhcchHHHHHHHHHhcccCCCChhh
Q 004468          437 DSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVM  477 (751)
Q Consensus       437 ~~~~~~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~~~  477 (751)
                      -|....|.......|+..|.+.+|..-...+...-|+....
T Consensus       102 KpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~  142 (504)
T KOG0624|consen  102 KPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLV  142 (504)
T ss_pred             CccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchh
Confidence            99999999999999999999999998777777777755543

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=82.78  E-value=96  Score=35.55  Aligned_cols=136  Identities=13%  Similarity=0.086  Sum_probs=72.6

Q ss_pred             ccchhhhccccccEEeccCCCcEEEEEECC--CCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEE----------
Q 004468           31 QMHSSLVRRLSQERELEGHQGCVNAISWNS--KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFC----------   98 (751)
Q Consensus        31 ~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~--dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~----------   98 (751)
                      ++...-+.++++.-.++-..  ...+.-+|  .+..|..++.++.|.-.|..+|+.+.++...-...+..          
T Consensus        38 qI~~~nv~~L~~~W~~~~g~--~~g~~stPvv~~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg  115 (527)
T TIGR03075        38 QINTENVKKLQPAWTFSLGK--LRGQESQPLVVDGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRG  115 (527)
T ss_pred             hcChhhhccceEEEEEECCC--CCCcccCCEEECCEEEEECCCCcEEEEECCCCceeeEecCCCCccccccccccccccc
Confidence            34445566666665554321  11112222  24567777778899999999999988773221111211          


Q ss_pred             EEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeec--ccC--CceeEEEEecCCCCEEEEEe-----CC
Q 004468           99 TKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQ--CHT--RRVKKLAVEVGNPHVVWSAS-----ED  169 (751)
Q Consensus        99 v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~--~h~--~~V~~l~~sp~~~~~l~s~s-----~D  169 (751)
                      ++..    +..|+.++.|+.|.-.|..++..          +-...  .+.  ..+.+--.-. ++.+++..+     .+
T Consensus       116 ~av~----~~~v~v~t~dg~l~ALDa~TGk~----------~W~~~~~~~~~~~~~tssP~v~-~g~Vivg~~~~~~~~~  180 (527)
T TIGR03075       116 VALY----DGKVFFGTLDARLVALDAKTGKV----------VWSKKNGDYKAGYTITAAPLVV-KGKVITGISGGEFGVR  180 (527)
T ss_pred             ceEE----CCEEEEEcCCCEEEEEECCCCCE----------EeecccccccccccccCCcEEE-CCEEEEeecccccCCC
Confidence            1121    34677778899999889886522          21111  111  0111110111 334444322     37


Q ss_pred             CcEEEEecCCCCCC
Q 004468          170 GTLRQHDFRQGSSC  183 (751)
Q Consensus       170 g~I~iwDlr~~~~~  183 (751)
                      |.|..+|.++++..
T Consensus       181 G~v~AlD~~TG~~l  194 (527)
T TIGR03075       181 GYVTAYDAKTGKLV  194 (527)
T ss_pred             cEEEEEECCCCcee
Confidence            89999999998754

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=82.55  E-value=83  Score=34.69  Aligned_cols=159  Identities=13%  Similarity=0.094  Sum_probs=90.3

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCeEE---EEecccCCcceEEEEEe---cCCCCcEEEEEECCCcEEEEECCCCCCCCCCC
Q 004468           61 KGSLLISGSDDTHINVWSYSSRKLL---HSIETGHSANVFCTKFV---PETSDELVVSGAGDAEVRLFNLSRFSGRGLDD  134 (751)
Q Consensus        61 dg~~LaSgs~Dg~I~IWd~~~~~~~---~~l~~~h~~~V~~v~fs---p~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~  134 (751)
                      +...++.||..|.++||++..+...   .-+...-..+|..+..-   +......||. =.-..+.||.+....+.....
T Consensus        36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~g  114 (418)
T PF14727_consen   36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEHG  114 (418)
T ss_pred             CccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcccC
Confidence            3469999999999999998643311   11112345677777643   4332334444 456788888885433331111


Q ss_pred             CCCCCceeecccCCc--eeEEEEecCC----CCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecc
Q 004468          135 NAITPSALYQCHTRR--VKKLAVEVGN----PHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSL  208 (751)
Q Consensus       135 ~~~~~~~~~~~h~~~--V~~l~~sp~~----~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  208 (751)
                      ... .+..+..|.-.  ...++.-|.+    ..++..-+.||++.+|+-+.-.                +..        
T Consensus       115 ~~~-~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~----------------f~~--------  169 (418)
T PF14727_consen  115 NQY-QLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFA----------------FSR--------  169 (418)
T ss_pred             cEE-EEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEE----------------EEE--------
Confidence            111 12223334322  2333333322    3578788999999999865432                000        


Q ss_pred             cCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCC
Q 004468          209 ADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRML  248 (751)
Q Consensus       209 ~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~  248 (751)
                       ..+. ..-...+.+.+. ...|++++.+..|..|....+
T Consensus       170 -~lp~-~llPgPl~Y~~~-tDsfvt~sss~~l~~Yky~~L  206 (418)
T PF14727_consen  170 -FLPD-FLLPGPLCYCPR-TDSFVTASSSWTLECYKYQDL  206 (418)
T ss_pred             -EcCC-CCCCcCeEEeec-CCEEEEecCceeEEEecHHHh
Confidence             0010 112234677774 689999999999999987544

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=82.52  E-value=1.8  Score=28.02  Aligned_cols=31  Identities=19%  Similarity=0.239  Sum_probs=28.8

Q ss_pred             hHHHHHHHHHHhcchHHHHHHHHHhcccCCC
Q 004468          443 AHLYMSEALEQLCKYKEALDFAIAAQCLDPS  473 (751)
Q Consensus       443 a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~  473 (751)
                      |.++++.|+..+|++.+|...++.+...+|.
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence            6789999999999999999999999999984

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=82.43  E-value=1.4  Score=45.74  Aligned_cols=97  Identities=24%  Similarity=0.169  Sum_probs=72.3

Q ss_pred             cCcchhHHHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhccc-ccchhhhHHHhhHHHhcC
Q 004468          358 TGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRK-WKNDAQMAIRDCYNARRI  436 (751)
Q Consensus       358 ~~~~~~~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~-w~~d~y~al~d~~~a~~~  436 (751)
                      .-.++.....-.+...+..|. +..+|+.+..+|...+..      ..+|..|+.++++-+ |.    +|++||..|+.|
T Consensus       109 e~~eqa~e~k~~A~eAln~G~-~~~ai~~~t~ai~lnp~~------a~l~~kr~sv~lkl~kp~----~airD~d~A~ei  177 (377)
T KOG1308|consen  109 EMMDQANDKKVQASEALNDGE-FDTAIELFTSAIELNPPL------AILYAKRASVFLKLKKPN----AAIRDCDFAIEI  177 (377)
T ss_pred             HHHHHHHHHHHHHHHHhcCcc-hhhhhcccccccccCCch------hhhcccccceeeeccCCc----hhhhhhhhhhcc
Confidence            344444555556667777777 778888888888765544      568899999998765 43    689999999999


Q ss_pred             CCCCcchHHHHHHHHHHhcchHHHHHHHH
Q 004468          437 DSSSFRAHLYMSEALEQLCKYKEALDFAI  465 (751)
Q Consensus       437 ~~~~~~a~~~~~~~l~~l~~~~~a~~~~~  465 (751)
                      +|...+.+-..-+|-..|+...+|...+.
T Consensus       178 n~Dsa~~ykfrg~A~rllg~~e~aa~dl~  206 (377)
T KOG1308|consen  178 NPDSAKGYKFRGYAERLLGNWEEAAHDLA  206 (377)
T ss_pred             CcccccccchhhHHHHHhhchHHHHHHHH
Confidence            99999888777778888887776664443

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=82.29  E-value=79  Score=34.23  Aligned_cols=113  Identities=8%  Similarity=-0.046  Sum_probs=60.7

Q ss_pred             EEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECC------------------
Q 004468           55 AISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD------------------  116 (751)
Q Consensus        55 ~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~D------------------  116 (751)
                      ...++++.+.|+-......|+--|+.+.+....+ .-....+-...|..++++.+++-.-..                  
T Consensus        85 g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy-~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~  163 (386)
T PF14583_consen   85 GGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVY-EVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYE  163 (386)
T ss_dssp             T-EE-TTSSEEEEEETTTEEEEEETTT--EEEEE-E--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHH
T ss_pred             ceEEecCCCeEEEEECCCeEEEEECCcCcEEEEE-ECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHh
Confidence            3556677777765555567777788877654333 445666666778766545555433211                  


Q ss_pred             ----CcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeC---CC-cEEEEecCC
Q 004468          117 ----AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASE---DG-TLRQHDFRQ  179 (751)
Q Consensus       117 ----g~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~---Dg-~I~iwDlr~  179 (751)
                          +.|.--|+.++          + ..++..-+..+..+.|+|.++.+|+-|-+   |. .-|||-+++
T Consensus       164 a~p~~~i~~idl~tG----------~-~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~  223 (386)
T PF14583_consen  164 ARPHCRIFTIDLKTG----------E-RKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINT  223 (386)
T ss_dssp             C---EEEEEEETTT-------------EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEET
T ss_pred             hCCCceEEEEECCCC----------c-eeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEc
Confidence                12333344332          1 33344456778889999999999888765   22 236676554

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=82.14  E-value=64  Score=33.09  Aligned_cols=160  Identities=16%  Similarity=0.155  Sum_probs=86.7

Q ss_pred             CCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCC
Q 004468           60 SKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITP  139 (751)
Q Consensus        60 ~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~  139 (751)
                      ..++.|+.|..+| |.+++.........+  .+...|..+...|+-  +.|+.-+ |+.+.++++..............+
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i--~~~~~I~ql~vl~~~--~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~   78 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRI--LKLSSITQLSVLPEL--NLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFP   78 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecCCccceeE--eecceEEEEEEeccc--CEEEEEc-CCccEEEEchhhcccccccccccc
Confidence            4678999999998 899998333333333  133449999999984  4555544 599999999864322110000000


Q ss_pred             c----eeecccCCceeEEE-EecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCC
Q 004468          140 S----ALYQCHTRRVKKLA-VEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQ  214 (751)
Q Consensus       140 ~----~~~~~h~~~V~~l~-~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  214 (751)
                      .    .........|...+ -....+...+.....++|.+|..........         ..+.+        +.    -
T Consensus        79 ~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~---------~~~ke--------~~----l  137 (275)
T PF00780_consen   79 KSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFS---------KLLKE--------IS----L  137 (275)
T ss_pred             ccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCccccc---------ceeEE--------EE----c
Confidence            0    00111223344343 1122333444455556899888776421100         00000        00    1


Q ss_pred             ccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCC
Q 004468          215 TLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPP  250 (751)
Q Consensus       215 ~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~  250 (751)
                      ...+.+++|.+   +.+++|..++ ..+.|+.+...
T Consensus       138 p~~~~~i~~~~---~~i~v~~~~~-f~~idl~~~~~  169 (275)
T PF00780_consen  138 PDPPSSIAFLG---NKICVGTSKG-FYLIDLNTGSP  169 (275)
T ss_pred             CCCcEEEEEeC---CEEEEEeCCc-eEEEecCCCCc
Confidence            25678888884   4777777555 66888886543

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=82.12  E-value=29  Score=38.24  Aligned_cols=133  Identities=12%  Similarity=0.133  Sum_probs=82.1

Q ss_pred             ccchhhhccccccEEeccCCCcEEEEEECCCC--------CEEEEEeCCCcEEEEeCC-CCeEEEEecccCCcceEEEEE
Q 004468           31 QMHSSLVRRLSQERELEGHQGCVNAISWNSKG--------SLLISGSDDTHINVWSYS-SRKLLHSIETGHSANVFCTKF  101 (751)
Q Consensus        31 ~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg--------~~LaSgs~Dg~I~IWd~~-~~~~~~~l~~~h~~~V~~v~f  101 (751)
                      +.+...|.+.+.+-+..-|.+.  -+.|+|+-        +.|+ |=.+..|.-.|+. .|..+...  ..+..++--.|
T Consensus       491 kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlv-GlS~~svFrIDPR~~gNKi~v~--esKdY~tKn~F  565 (776)
T COG5167         491 KLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLV-GLSDYSVFRIDPRARGNKIKVV--ESKDYKTKNKF  565 (776)
T ss_pred             cceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEE-eecccceEEecccccCCceeee--eehhccccccc
Confidence            4455678899999999888766  67888842        3344 4445555555764 23222221  11222222223


Q ss_pred             ecC--CCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCC
Q 004468          102 VPE--TSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQ  179 (751)
Q Consensus       102 sp~--s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~  179 (751)
                      +..  +..-+||.||.-|-|++||--.-          .....+.+-...|..|..+.++.++|+||  ...+.+-|++-
T Consensus       566 ss~~tTesGyIa~as~kGDirLyDRig~----------rAKtalP~lG~aIk~idvta~Gk~ilaTC--k~yllL~d~~i  633 (776)
T COG5167         566 SSGMTTESGYIAAASRKGDIRLYDRIGK----------RAKTALPGLGDAIKHIDVTANGKHILATC--KNYLLLTDVPI  633 (776)
T ss_pred             cccccccCceEEEecCCCceeeehhhcc----------hhhhcCcccccceeeeEeecCCcEEEEee--cceEEEEeccc
Confidence            211  11359999999999999997532          23455677788999999998555555554  35788888765


Q ss_pred             C
Q 004468          180 G  180 (751)
Q Consensus       180 ~  180 (751)
                      .
T Consensus       634 k  634 (776)
T COG5167         634 K  634 (776)
T ss_pred             c
Confidence            3

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=81.77  E-value=8.2  Score=38.51  Aligned_cols=65  Identities=14%  Similarity=0.233  Sum_probs=44.8

Q ss_pred             ECCCCCEEEEEeCCCcEEEEeCCCCeEEEEe------cc-------cCCcceEEEEEecCCCCcEEEEEECCCcEEEEEC
Q 004468           58 WNSKGSLLISGSDDTHINVWSYSSRKLLHSI------ET-------GHSANVFCTKFVPETSDELVVSGAGDAEVRLFNL  124 (751)
Q Consensus        58 ~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l------~~-------~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~  124 (751)
                      +..++++|+.-..+|.+++||+.+++.+..-      ..       .....|..+....+  |.-|++-+ +|..+.|+.
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~--G~PiV~ls-ng~~y~y~~   94 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSN--GVPIVTLS-NGDSYSYSP   94 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCC--CCEEEEEe-CCCEEEecc
Confidence            4457889999999999999999988765432      11       24456777777655  56566554 366677776


Q ss_pred             C
Q 004468          125 S  125 (751)
Q Consensus       125 ~  125 (751)
                      .
T Consensus        95 ~   95 (219)
T PF07569_consen   95 D   95 (219)
T ss_pred             c
Confidence            5

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=81.03  E-value=69  Score=32.71  Aligned_cols=113  Identities=16%  Similarity=0.151  Sum_probs=66.0

Q ss_pred             cEEEEEECCCCCEEEEEe---CCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEE-CCCC
Q 004468           52 CVNAISWNSKGSLLISGS---DDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFN-LSRF  127 (751)
Q Consensus        52 ~V~~l~~s~dg~~LaSgs---~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd-~~~~  127 (751)
                      .+...+++++|+.+|...   ....+.++..  +.....+..+.  .+..-.|.++  +...+....+...+++. ...+
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~~g~--~l~~PS~d~~--g~~W~v~~~~~~~~~~~~~~~g   98 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPA--GGPVRPVLTGG--SLTRPSWDPD--GWVWTVDDGSGGVRVVRDSASG   98 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcC--CCcceeeccCC--ccccccccCC--CCEEEEEcCCCceEEEEecCCC
Confidence            688999999999877665   3334555543  33333332333  6788889998  67777767777777774 2222


Q ss_pred             CCCCCCCCCCCCceee-cccCCceeEEEEecCCCCEEEEE--eCCCcEEEEecC
Q 004468          128 SGRGLDDNAITPSALY-QCHTRRVKKLAVEVGNPHVVWSA--SEDGTLRQHDFR  178 (751)
Q Consensus       128 ~~~~~~~~~~~~~~~~-~~h~~~V~~l~~sp~~~~~l~s~--s~Dg~I~iwDlr  178 (751)
                      ..        .++..- ..-...|..+.++|++.++.+..  ..++.|.+--+.
T Consensus        99 ~~--------~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~  144 (253)
T PF10647_consen   99 TG--------EPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVV  144 (253)
T ss_pred             cc--------eeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEE
Confidence            11        111111 11112899999999554443333  335677666544

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=80.42  E-value=0.35  Score=52.20  Aligned_cols=142  Identities=10%  Similarity=0.123  Sum_probs=94.6

Q ss_pred             EEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCC
Q 004468           53 VNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGL  132 (751)
Q Consensus        53 V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~  132 (751)
                      -....|-+.+.-|+.++.+..|..||-. ++....+  .-++....++|..+. +..++.+-..+.+.+||+.+..    
T Consensus        37 pi~~~w~~e~~nlavaca~tiv~~YD~a-gq~~le~--n~tg~aldm~wDkeg-dvlavlAek~~piylwd~n~ey----  108 (615)
T KOG2247|consen   37 PIIHRWRPEGHNLAVACANTIVIYYDKA-GQVILEL--NPTGKALDMAWDKEG-DVLAVLAEKTGPIYLWDVNSEY----  108 (615)
T ss_pred             cceeeEecCCCceehhhhhhHHHhhhhh-cceeccc--CCchhHhhhhhcccc-chhhhhhhcCCCeeechhhhhh----
Confidence            3355678877779999999999999954 4444333  345667788888763 4556667788999999998632    


Q ss_pred             CCCCCCCceeec---ccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceeccc
Q 004468          133 DDNAITPSALYQ---CHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLA  209 (751)
Q Consensus       133 ~~~~~~~~~~~~---~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  209 (751)
                             ...+.   .|....  +.|++ +...++.+-..|.+++++.++.+..                         .
T Consensus       109 -------tqqLE~gg~~s~sl--l~wsK-g~~el~ig~~~gn~viynhgtsR~i-------------------------i  153 (615)
T KOG2247|consen  109 -------TQQLESGGTSSKSL--LAWSK-GTPELVIGNNAGNIVIYNHGTSRRI-------------------------I  153 (615)
T ss_pred             -------HHHHhccCcchHHH--Hhhcc-CCccccccccccceEEEeccchhhh-------------------------h
Confidence                   22221   122222  67888 5566777888899999998876533                         1


Q ss_pred             CCCCCccceEEEEEeCCCCcEEEEEeCCCe
Q 004468          210 DPPKQTLSLKSCDISSTRPHLLLVGGSDAF  239 (751)
Q Consensus       210 ~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~  239 (751)
                      ...+|...++++++.+.  .+.+.++.|..
T Consensus       154 v~Gkh~RRgtq~av~lE--d~vil~dcd~~  181 (615)
T KOG2247|consen  154 VMGKHQRRGTQIAVTLE--DYVILCDCDNT  181 (615)
T ss_pred             hhcccccceeEEEeccc--ceeeecCcHHH
Confidence            22236667888888884  45666655543

>PRK12370 invasion protein regulator; Provisional

Probab=80.06  E-value=6.5  Score=45.37  Aligned_cols=87  Identities=15%  Similarity=0.034  Sum_probs=65.8

Q ss_pred             hhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcchHHHHHHHHHHhcchHH
Q 004468          380 PYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKE  459 (751)
Q Consensus       380 ~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~a~~~~~~~l~~l~~~~~  459 (751)
                      +..|+..+..++...++.      ...+...+.++...   |+.-.|+.-..+|+.++|++..+|+.++.++...|++.+
T Consensus       320 ~~~A~~~~~~Al~ldP~~------~~a~~~lg~~~~~~---g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~e  390 (553)
T PRK12370        320 MIKAKEHAIKATELDHNN------PQALGLLGLINTIH---SEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEE  390 (553)
T ss_pred             HHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHc---cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHH
Confidence            445666667777655443      22344455554433   345568888899999999999999999999999999999


Q ss_pred             HHHHHHHhcccCCCCh
Q 004468          460 ALDFAIAAQCLDPSNS  475 (751)
Q Consensus       460 a~~~~~~~~~~~p~~~  475 (751)
                      |+.+++......|.+.
T Consensus       391 Ai~~~~~Al~l~P~~~  406 (553)
T PRK12370        391 ALQTINECLKLDPTRA  406 (553)
T ss_pred             HHHHHHHHHhcCCCCh
Confidence            9999999999989754

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=80.02  E-value=12  Score=45.20  Aligned_cols=97  Identities=9%  Similarity=0.042  Sum_probs=81.6

Q ss_pred             HHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcchHHHHHH
Q 004468          370 ARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSE  449 (751)
Q Consensus       370 ~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~a~~~~~~  449 (751)
                      +.-....|. +..|+..+.+++...+..      ..++...|..+..++|   .-.|+....+++.++|.+...++.++.
T Consensus       366 a~~l~~~g~-~~eA~~~l~~al~~~P~n------~~l~~~lA~l~~~~g~---~~~A~~~l~~al~l~Pd~~~l~~~~a~  435 (765)
T PRK10049        366 SQVAKYSND-LPQAEMRARELAYNAPGN------QGLRIDYASVLQARGW---PRAAENELKKAEVLEPRNINLEVEQAW  435 (765)
T ss_pred             HHHHHHcCC-HHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHhcCC---HHHHHHHHHHHHhhCCCChHHHHHHHH
Confidence            334444555 788999999999877665      3477888898888888   466888889999999999999999999


Q ss_pred             HHHHhcchHHHHHHHHHhcccCCCChh
Q 004468          450 ALEQLCKYKEALDFAIAAQCLDPSNSV  476 (751)
Q Consensus       450 ~l~~l~~~~~a~~~~~~~~~~~p~~~~  476 (751)
                      .+..++++.+|...+.++...+|+...
T Consensus       436 ~al~~~~~~~A~~~~~~ll~~~Pd~~~  462 (765)
T PRK10049        436 TALDLQEWRQMDVLTDDVVAREPQDPG  462 (765)
T ss_pred             HHHHhCCHHHHHHHHHHHHHhCCCCHH
Confidence            999999999999999999999998763

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	751
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		9e-11
2gnq_A	336	Structure Of Wdr5 Length = 336		1e-10
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		1e-10
2g99_A	308	Structural Basis For The Specific Recognition Of Me		1e-10
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		1e-10
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		1e-10
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		1e-10
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		1e-10
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		1e-10
2h9l_A	329	Wdr5delta23 Length = 329		1e-10
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		1e-10
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		1e-10
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		1e-10
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		1e-10
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		1e-10
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		2e-10
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		2e-10
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		2e-05
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		5e-05
3iz6_a	380	Localization Of The Small Subunit Ribosomal Protein		1e-04
4aez_A	401	Crystal Structure Of Mitotic Checkpoint Complex Len		3e-04
3gfc_A	425	Crystal Structure Of Histone-Binding Protein Rbbp4		4e-04
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		4e-04
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		4e-04
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		5e-04
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		5e-04
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		7e-04
2yba_A	422	Crystal Structure Of Nurf55 In Complex With Histone		8e-04
2xyi_A	430	Crystal Structure Of Nurf55 In Complex With A H4 Pe		9e-04
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		9e-04

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 65.9 bits (159), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 14/138 (10%)
Query: 43  ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV 102
           E+ + GH+  ++ ++W+S  +LL+S SDD  + +W  SS K L +++ GHS  VFC  F 
Sbjct: 80  EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFN 138
Query: 103 PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHV 162
           P+++  L+VSG+ D  VR++++   +G+ L         +   H  R   L V       
Sbjct: 139 PQSN--LIVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIV------- 187
Query: 163 VWSASEDGTLRQHDFRQG 180
             S+S DG  R  D   G
Sbjct: 188 --SSSYDGLCRIWDTASG 203

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 14/138 (10%)
Query: 43  ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV 102
           E+ + GH+  ++ ++W+S  +LL+S SDD  + +W  SS K L +++ GHS  VFC  F 
Sbjct: 82  EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFN 140
Query: 103 PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHV 162
           P+++  L+VSG+ D  VR++++   +G+ L         +   H  R   L V       
Sbjct: 141 PQSN--LIVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIV------- 189
Query: 163 VWSASEDGTLRQHDFRQG 180
             S+S DG  R  D   G
Sbjct: 190 --SSSYDGLCRIWDTASG 205

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 14/138 (10%)
Query: 43  ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV 102
           E+ + GH+  ++ ++W+S  +LL+S SDD  + +W  SS K L +++ GHS  VFC  F 
Sbjct: 64  EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFN 122
Query: 103 PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHV 162
           P+++  L+VSG+ D  VR++++   +G+ L         +   H  R   L V       
Sbjct: 123 PQSN--LIVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIV------- 171
Query: 163 VWSASEDGTLRQHDFRQG 180
             S+S DG  R  D   G
Sbjct: 172 --SSSYDGLCRIWDTASG 187

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 14/138 (10%)
Query: 43  ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV 102
           E+ + GH+  ++ ++W+S  +LL+S SDD  + +W  SS K L +++ GHS  VFC  F 
Sbjct: 54  EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFN 112
Query: 103 PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHV 162
           P+++  L+VSG+ D  VR++++   +G+ L         +   H  R   L V       
Sbjct: 113 PQSN--LIVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIV------- 161
Query: 163 VWSASEDGTLRQHDFRQG 180
             S+S DG  R  D   G
Sbjct: 162 --SSSYDGLCRIWDTASG 177

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 14/138 (10%)
Query: 43  ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV 102
           E+ + GH+  ++ ++W+S  +LL+S SDD  + +W  SS K L +++ GHS  VFC  F 
Sbjct: 64  EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFN 122
Query: 103 PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHV 162
           P+++  L+VSG+ D  VR++++   +G+ L         +   H  R   L V       
Sbjct: 123 PQSN--LIVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIV------- 171
Query: 163 VWSASEDGTLRQHDFRQG 180
             S+S DG  R  D   G
Sbjct: 172 --SSSYDGLCRIWDTASG 187

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 14/138 (10%)
Query: 43  ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV 102
           E+ + GH+  ++ ++W+S  +LL+S SDD  + +W  SS K L +++ GHS  VFC  F 
Sbjct: 57  EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFN 115
Query: 103 PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHV 162
           P+++  L+VSG+ D  VR++++   +G+ L         +   H  R   L V       
Sbjct: 116 PQSN--LIVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIV------- 164
Query: 163 VWSASEDGTLRQHDFRQG 180
             S+S DG  R  D   G
Sbjct: 165 --SSSYDGLCRIWDTASG 180

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 14/138 (10%)
Query: 43  ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV 102
           E+ + GH+  ++ ++W+S  +LL+S SDD  + +W  SS K L +++ GHS  VFC  F 
Sbjct: 64  EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFN 122
Query: 103 PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHV 162
           P+++  L+VSG+ D  VR++++   +G+ L         +   H  R   L V       
Sbjct: 123 PQSN--LIVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIV------- 171
Query: 163 VWSASEDGTLRQHDFRQG 180
             S+S DG  R  D   G
Sbjct: 172 --SSSYDGLCRIWDTASG 187

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 14/138 (10%)
Query: 43  ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV 102
           E+ + GH+  ++ ++W+S  +LL+S SDD  + +W  SS K L +++ GHS  VFC  F 
Sbjct: 58  EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFN 116
Query: 103 PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHV 162
           P+++  L+VSG+ D  VR++++   +G+ L         +   H  R   L V       
Sbjct: 117 PQSN--LIVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIV------- 165
Query: 163 VWSASEDGTLRQHDFRQG 180
             S+S DG  R  D   G
Sbjct: 166 --SSSYDGLCRIWDTASG 181

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 14/138 (10%)
Query: 43  ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV 102
           E+ + GH+  ++ ++W+S  +LL+S SDD  + +W  SS K L +++ GHS  VFC  F 
Sbjct: 58  EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFN 116
Query: 103 PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHV 162
           P+++  L+VSG+ D  VR++++   +G+ L         +   H  R   L V       
Sbjct: 117 PQSN--LIVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIV------- 165
Query: 163 VWSASEDGTLRQHDFRQG 180
             S+S DG  R  D   G
Sbjct: 166 --SSSYDGLCRIWDTASG 181

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 14/138 (10%)
Query: 43  ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV 102
           E+ + GH+  ++ ++W+S  +LL+S SDD  + +W  SS K L +++ GHS  VFC  F 
Sbjct: 75  EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFN 133
Query: 103 PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHV 162
           P+++  L+VSG+ D  VR++++   +G+ L         +   H  R   L V       
Sbjct: 134 PQSN--LIVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIV------- 182
Query: 163 VWSASEDGTLRQHDFRQG 180
             S+S DG  R  D   G
Sbjct: 183 --SSSYDGLCRIWDTASG 198

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 14/138 (10%)
Query: 43  ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV 102
           E+ + GH+  ++ ++W+S  +LL+S SDD  + +W  SS K L +++ GHS  VFC  F 
Sbjct: 59  EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFN 117
Query: 103 PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHV 162
           P+++  L+VSG+ D  VR++++   +G+ L         +   H  R   L V       
Sbjct: 118 PQSN--LIVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIV------- 166
Query: 163 VWSASEDGTLRQHDFRQG 180
             S+S DG  R  D   G
Sbjct: 167 --SSSYDGLCRIWDTASG 182

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 14/138 (10%)
Query: 43  ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV 102
           E+ + GH+  ++ ++W+S  +LL+S SDD  + +W  SS K L +++ GHS  VFC  F 
Sbjct: 63  EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFN 121
Query: 103 PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHV 162
           P+++  L+VSG+ D  VR++++   +G+ L         +   H  R   L V       
Sbjct: 122 PQSN--LIVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIV------- 170
Query: 163 VWSASEDGTLRQHDFRQG 180
             S+S DG  R  D   G
Sbjct: 171 --SSSYDGLCRIWDTASG 186

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 14/138 (10%)
Query: 43  ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV 102
           E+ + GH+  ++ ++W+S  +LL+S SDD  + +W  SS K L +++ GHS  VFC  F 
Sbjct: 61  EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFN 119
Query: 103 PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHV 162
           P+++  L+VSG+ D  VR++++   +G+ L         +   H  R   L V       
Sbjct: 120 PQSN--LIVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIV------- 168
Query: 163 VWSASEDGTLRQHDFRQG 180
             S+S DG  R  D   G
Sbjct: 169 --SSSYDGLCRIWDTASG 184

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 14/138 (10%)
Query: 43  ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV 102
           E+ + GH+  ++ ++W+S  +LL+S SDD  + +W  SS K L +++ GHS  VFC  F 
Sbjct: 61  EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFN 119
Query: 103 PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHV 162
           P+++  L+VSG+ D  VR++++   +G+ L         +   H  R   L V       
Sbjct: 120 PQSN--LIVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIV------- 168
Query: 163 VWSASEDGTLRQHDFRQG 180
             S+S DG  R  D   G
Sbjct: 169 --SSSYDGLCRIWDTASG 184

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 14/138 (10%)
Query: 43  ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV 102
           E+ + GH+  ++ ++W+S  +LL+S SDD  + +W  SS K L +++ GHS  VFC  F 
Sbjct: 61  EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFN 119
Query: 103 PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHV 162
           P+++  L+VSG+ D  VR++++   +G+ L         +   H  R   L V       
Sbjct: 120 PQSN--LIVSGSFDESVRIWDVK--TGKCLKTLPAHSDPVSAVHFNRDGSLIV------- 168
Query: 163 VWSASEDGTLRQHDFRQG 180
             S+S DG  R  D   G
Sbjct: 169 --SSSYDGLCRIWDTASG 184

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 65.1 bits (157), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 31/82 (37%), Positives = 55/82 (67%), Gaps = 3/82 (3%)
Query: 43  ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV 102
           E+ + GH+  ++ ++W+S  +LL+S SDD  + +W  SS K L +++ GHS  VFC  F 
Sbjct: 61  EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFN 119
Query: 103 PETSDELVVSGAGDAEVRLFNL 124
           P+++  L+VSG+ D  VR++++
Sbjct: 120 PQSN--LIVSGSFDESVRIWDV 139

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 64.7 bits (156), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 31/82 (37%), Positives = 55/82 (67%), Gaps = 3/82 (3%)
Query: 43  ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV 102
           E+ + GH+  ++ ++W+S  +LL+S SDD  + +W  SS K L +++ GHS  VFC  F 
Sbjct: 61  EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFN 119
Query: 103 PETSDELVVSGAGDAEVRLFNL 124
           P+++  L+VSG+ D  VR++++
Sbjct: 120 PQSN--LIVSGSFDESVRIWDV 139

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 48/85 (56%), Gaps = 7/85 (8%)
Query: 40  LSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCT 99
           ++  R L GH+  VN + ++ K   ++S S D  I VW+ S+ + + ++  GH   + C 
Sbjct: 246 ITLRRVLVGHRAAVNVVDFDDK--YIVSASGDRTIKVWNTSTCEFVRTLN-GHKRGIACL 302
Query: 100 KFVPETSDELVVSGAGDAEVRLFNL 124
           ++     D LVVSG+ D  +RL+++
Sbjct: 303 QY----RDRLVVSGSSDNTIRLWDI 323

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 47/80 (58%), Gaps = 4/80 (5%)
Query: 44  RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP 103
           + L GH   V  ++++  G  + S SDD  + +W+ +  +LL ++ TGHS++V+   F P
Sbjct: 379 QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQTL-TGHSSSVWGVAFSP 436
Query: 104 ETSDELVVSGAGDAEVRLFN 123
           +  D+ + S + D  V+L+N
Sbjct: 437 D--DQTIASASDDKTVKLWN 454

>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 51/207 (24%), Positives = 84/207 (40%), Gaps = 32/207 (15%)
Query: 44  RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP 103
           R L+GH G V ++ W  + + ++S S D  + VW+  + +  H+I+  H   V    F P
Sbjct: 60  RTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKL-HCPWVMECAFAP 118
Query: 104 ETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVV 163
             + + V  G  D+   +FNLS  + R   D  +  S +   H                 
Sbjct: 119 --NGQSVACGGLDSACSIFNLSSQADR---DGNMPVSRVLTGHKGY-------------- 159
Query: 164 WSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLAD---PPKQTLSLKS 220
             AS    +   + R        GS  Q C  +L D+  G + S+     P   T  + S
Sbjct: 160 --ASSCQYVPDQETRL-----ITGSGDQTC--VLWDVTTGQRISIFGSEFPSGHTADVLS 210
Query: 221 CDISSTRPHLLLVGGSDAFARLYDRRM 247
             I+S   ++ + G  D   RL+D R+
Sbjct: 211 LSINSLNANMFISGSCDTTVRLWDLRI 237

>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex Length = 401

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/138 (24%), Positives = 59/138 (42%), Gaps = 3/138 (2%)
Query: 42  QERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKF 101
           Q   L+GH   V  ++W S G  L SG +D  + +W   S  +    +T H+A V    +
Sbjct: 209 QIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARS-SIPKFTKTNHNAAVKAVAW 267
Query: 102 VPETSDELVVSGAG-DAEVRLFNLSRFSG-RGLDDNAITPSALYQCHTRRVKKLAVEVGN 159
            P  S+ L   G   D ++  +N +  +    +D  +   S ++  H++ +        N
Sbjct: 268 CPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDN 327
Query: 160 PHVVWSASEDGTLRQHDF 177
              +WS S  G  +Q D 
Sbjct: 328 NLSIWSYSSSGLTKQVDI 345

>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 45/180 (25%), Positives = 78/180 (43%), Gaps = 26/180 (14%)
Query: 17  TRHTDTRPDVNHSLQMHSSLVRRLSQEREL-----------------EGHQGCVNAISWN 59
           T HT    DV+  L +H SL   ++ +++L                 + H   VN +S+N
Sbjct: 224 TGHTAVVEDVSWHL-LHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFN 282
Query: 60  SKGS-LLISGSDDTHINVWSYSSRKL-LHSIETGHSANVFCTKFVPETSDELVVSGAGDA 117
                +L +GS D  + +W   + KL LHS E+ H   +F  ++ P     L  SG  D 
Sbjct: 283 PYSEFILATGSADKTVALWDLRNLKLKLHSFES-HKDEIFQVQWSPHNETILASSGT-DR 340
Query: 118 EVRLFNLSRF----SGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLR 173
            + +++LS+     S    +D       ++  HT ++   +     P V+ S SED  ++
Sbjct: 341 RLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ 400

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 20/72 (27%), Positives = 44/72 (61%), Gaps = 3/72 (4%)
Query: 53  VNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVS 112
           + ++ ++  G  L +G++D  I +W   +RK++  ++ GH  +++   + P  S + +VS
Sbjct: 126 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQ-GHEQDIYSLDYFP--SGDKLVS 182
Query: 113 GAGDAEVRLFNL 124
           G+GD  VR+++L
Sbjct: 183 GSGDRTVRIWDL 194

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 30/48 (62%)
Query: 40   LSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHS 87
            LS   EL+GH GCV   +++  G LL +G D+  I +W+ S  +LLHS
Sbjct: 1124 LSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHS 1171

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 30/48 (62%)
Query: 40   LSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHS 87
            LS   EL+GH GCV   +++  G LL +G D+  I +W+ S  +LLHS
Sbjct: 1117 LSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHS 1164

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 50/180 (27%), Positives = 82/180 (45%), Gaps = 45/180 (25%)
Query: 44  RELEGHQGCVNAISWNS--KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKF 101
           R L GH G V    W+S  + +++ISGS D  + VW+  + + +H++  GH++ V C   
Sbjct: 153 RTLVGHTGGV----WSSQMRDNIIISGSTDRTLKVWNAETGECIHTLY-GHTSTVRCMHL 207
Query: 102 VPETSDELVVSGAGDAEVRLFNLS------------------RFSGRGLDDNAI------ 137
                ++ VVSG+ DA +R++++                   ++ GR +   A       
Sbjct: 208 ----HEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKV 263
Query: 138 ----TPSALY--QCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQ 191
               T + L+  Q HT RV  L  +    HVV S S D ++R  D   G +C    + HQ
Sbjct: 264 WDPETETCLHTLQGHTNRVYSLQFD--GIHVV-SGSLDTSIRVWDVETG-NCIHTLTGHQ 319

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 44/85 (51%)
Query: 41  SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTK 100
           +  R   GH   V +++++S    ++SGS D  I +W+          +  HS  V C +
Sbjct: 96  TTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVR 155
Query: 101 FVPETSDELVVSGAGDAEVRLFNLS 125
           F P +S+ ++VS   D  V+++NL+
Sbjct: 156 FSPNSSNPIIVSCGWDKLVKVWNLA 180

>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 44/180 (24%), Positives = 77/180 (42%), Gaps = 26/180 (14%)
Query: 17  TRHTDTRPDVNHSLQMHSSLVRRLSQEREL-----------------EGHQGCVNAISWN 59
           T HT    DV   L +H SL   ++ +++L                 + H   VN +S+N
Sbjct: 232 TGHTAVVEDVAWHL-LHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFN 290
Query: 60  SKGS-LLISGSDDTHINVWSYSSRKL-LHSIETGHSANVFCTKFVPETSDELVVSGAGDA 117
                +L +GS D  + +W   + KL LHS E+ H   +F  ++ P     L  SG  D 
Sbjct: 291 PYSEFILATGSADKTVALWDLRNLKLKLHSFES-HKDEIFQVQWSPHNETILASSGT-DR 348
Query: 118 EVRLFNLSRF----SGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLR 173
            + +++LS+     S    +D       ++  HT ++   +     P ++ S SED  ++
Sbjct: 349 RLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQ 408

>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430

Iteration: 1
 Score = 42.4 bits (98), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 44/180 (24%), Positives = 77/180 (42%), Gaps = 26/180 (14%)
Query: 17  TRHTDTRPDVNHSLQMHSSLVRRLSQEREL-----------------EGHQGCVNAISWN 59
           T HT    DV   L +H SL   ++ +++L                 + H   VN +S+N
Sbjct: 228 TGHTAVVEDVAWHL-LHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFN 286
Query: 60  SKGS-LLISGSDDTHINVWSYSSRKL-LHSIETGHSANVFCTKFVPETSDELVVSGAGDA 117
                +L +GS D  + +W   + KL LHS E+ H   +F  ++ P     L  SG  D 
Sbjct: 287 PYSEFILATGSADKTVALWDLRNLKLKLHSFES-HKDEIFQVQWSPHNETILASSGT-DR 344
Query: 118 EVRLFNLSRF----SGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLR 173
            + +++LS+     S    +D       ++  HT ++   +     P ++ S SED  ++
Sbjct: 345 RLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQ 404

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 42.4 bits (98), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 44/85 (51%)
Query: 41  SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTK 100
           +  R   GH   V +++++S    ++SGS D  I +W+          +  HS  V C +
Sbjct: 119 TTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVR 178
Query: 101 FVPETSDELVVSGAGDAEVRLFNLS 125
           F P +S+ ++VS   D  V+++NL+
Sbjct: 179 FSPNSSNPIIVSCGWDKLVKVWNLA 203

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	751
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.98
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.98
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.98
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.98
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.98
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.98
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.98
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.98
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.97
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.97
2pm7_B	297	Protein transport protein SEC13, protein transport	99.97
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.97
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.97
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.97
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.97
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.97
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.97
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.97
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.97
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.97
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.97
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.97
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.96
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.96
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.96
3jro_A	753	Fusion protein of protein transport protein SEC13	99.96
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.96
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.96
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.96
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.96
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.96
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.96
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.96
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.96
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.96
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.96
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.96
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.96
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.96
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.96
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.95
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.95
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.95
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.95
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.95
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.95
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.95
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.95
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.94
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.94
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.94
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.94
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.94
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.93
3jro_A	753	Fusion protein of protein transport protein SEC13	99.93
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.93
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.92
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.92
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.92
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.92
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.92
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.92
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.92
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.9
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.9
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.88
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.86
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.86
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.85
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.84
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.83
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.82
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.81
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.8
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.8
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.79
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.78
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.78
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.77
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.77
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.77
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.75
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.74
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.73
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.71
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.69
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.69
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.69
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.69
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.69
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.68
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.65
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.65
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.64
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.64
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.64
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.61
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.58
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.57
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.54
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.51
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.48
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.47
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.47
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.47
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.43
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.43
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.42
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.39
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.38
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.37
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.35
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.34
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.33
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.3
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.28
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.28
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.23
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.23
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.2
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.19
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.18
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.13
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.13
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.11
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.09
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.08
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.08
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.08
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.07
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.07
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.05
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.03
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.01
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.01
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	98.99
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	98.96
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	98.96
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	98.94
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	98.93
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	98.92
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	98.92
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	98.9
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	98.87
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	98.87
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	98.86
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.86
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	98.84
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	98.79
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.74
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	98.74
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.73
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	98.71
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.71
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.71
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	98.59
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	98.58
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	98.57
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	98.56
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.48
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	98.43
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.43
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.39
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.34
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	98.29
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.26
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.22
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.2
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.17
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.08
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.07
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.04
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.03
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	97.95
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	97.93
2p4o_A	306	Hypothetical protein; putative lactonase, structur	97.92
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	97.88
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	97.87
3v65_B	386	Low-density lipoprotein receptor-related protein;	97.84
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	97.83
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	97.81
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	97.76
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	97.74
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	97.74
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	97.73
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	97.71
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	97.69
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	97.66
3v65_B	386	Low-density lipoprotein receptor-related protein;	97.55
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	97.52
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	97.51
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	97.5
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.48
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	97.43
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	97.43
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	97.43
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	97.42
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	97.42
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	97.39
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	97.37
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	97.3
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	97.29
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	97.27
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.27
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	97.13
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	97.12
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	97.1
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.1
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	97.09
2p4o_A	306	Hypothetical protein; putative lactonase, structur	97.05
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	97.02
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	97.0
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	96.99
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	96.95
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	96.95
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	96.9
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	96.84
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	96.82
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	96.8
4a2l_A	795	BT_4663, two-component system sensor histidine kin	96.79
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	96.79
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	96.75
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	96.71
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	96.7
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	96.69
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	96.69
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	96.48
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	96.46
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	96.43
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	96.41
4a2l_A	795	BT_4663, two-component system sensor histidine kin	96.37
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	96.36
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	96.35
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	96.28
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	96.25
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	96.24
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	96.06
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	96.06
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	96.05
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	96.04
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	96.04
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	95.93
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	95.93
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	95.92
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	95.85
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	95.81
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	95.76
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	95.72
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	95.58
3kya_A	496	Putative phosphatase; structural genomics, joint c	95.48
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	95.4
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	95.36
3v9f_A	781	Two-component system sensor histidine kinase/RESP	95.31
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	95.29
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	95.28
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	95.27
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	95.21
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	95.13
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	94.89
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	94.83
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	94.83
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	94.81
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	94.69
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	94.67
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	94.65
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	94.64
3v9f_A	781	Two-component system sensor histidine kinase/RESP	94.64
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	94.48
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	94.46
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	94.39
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	94.35
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	94.31
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	94.11
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	94.0
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	93.98
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	93.96
2l6j_A	111	TPR repeat-containing protein associated with HSP;	93.87
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	93.87
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	93.78
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	93.77
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	93.75
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	93.62
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	93.55
3kya_A	496	Putative phosphatase; structural genomics, joint c	93.4
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	93.25
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	93.14
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	93.11
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	92.57
3k9i_A	117	BH0479 protein; putative protein binding protein,	92.56
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	92.55
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	92.31
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	92.28
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	92.27
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	92.24
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	91.76
2gw1_A	514	Mitochondrial precursor proteins import receptor;	91.46
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	91.23
2kat_A	115	Uncharacterized protein; NESG, structure, structur	91.07
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	90.86
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	90.85
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	90.8
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	90.45
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	90.44
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	89.77
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	89.73
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	89.71
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	89.47
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	89.46
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	89.22
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	89.21
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	89.16
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	89.05
2gw1_A	514	Mitochondrial precursor proteins import receptor;	88.98
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	88.73
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	88.57
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	88.55
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	88.47
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	88.43
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	88.38
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	88.34
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	88.32
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	88.24
2l6j_A	111	TPR repeat-containing protein associated with HSP;	88.23
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	88.14
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	88.04
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	87.97
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	87.84
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	87.59
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	87.56
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	87.5
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	87.1
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	87.1
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	86.91
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	86.72
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	86.6
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	86.56
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	86.39
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	86.03
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	85.84
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	85.67
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	85.58
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	85.45
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	84.79
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	84.75
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	84.66
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	84.65
3u4t_A	272	TPR repeat-containing protein; structural genomics	84.58
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	84.29
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	83.88
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	83.73
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	83.28
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	82.94
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	82.8
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	82.73
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	82.66
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	82.41
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	82.16
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	82.15
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	82.06
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	81.72
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	81.52
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	81.26
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	81.16
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	81.06
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	80.91
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	80.89
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	80.51
3u4t_A	272	TPR repeat-containing protein; structural genomics	80.33
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	80.33
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	80.23
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	80.22
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	80.14

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=1.3e-40  Score=367.61  Aligned_cols=209  Identities=18%  Similarity=0.306  Sum_probs=179.9

Q ss_pred             cccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEE
Q 004468           41 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR  120 (751)
Q Consensus        41 ~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~  120 (751)
                      .....|.+|.+.|++++|+|++++||||+.|++|+|||+.+++.+..+ .+|.+.|.+++|+|+  +.+|++|+.|++|+
T Consensus        99 ~~~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l-~~h~~~V~~v~~~~~--~~~l~sgs~D~~i~  175 (410)
T 1vyh_C           99 PEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTL-KGHTDSVQDISFDHS--GKLLASCSADMTIK  175 (410)
T ss_dssp             SCSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEE-CCCSSCEEEEEECTT--SSEEEEEETTSCCC
T ss_pred             CceEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEE-eccCCcEEEEEEcCC--CCEEEEEeCCCeEE
Confidence            346789999999999999999999999999999999999999998888 899999999999998  79999999999999


Q ss_pred             EEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEec
Q 004468          121 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDL  200 (751)
Q Consensus       121 vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~  200 (751)
                      |||+...          +++..+.+|...|.+++|+| ++.+|++|+.|++|++||++++...           .     
T Consensus       176 iwd~~~~----------~~~~~~~~h~~~V~~v~~~p-~~~~l~s~s~D~~i~~wd~~~~~~~-----------~-----  228 (410)
T 1vyh_C          176 LWDFQGF----------ECIRTMHGHDHNVSSVSIMP-NGDHIVSASRDKTIKMWEVQTGYCV-----------K-----  228 (410)
T ss_dssp             EEETTSS----------CEEECCCCCSSCEEEEEECS-SSSEEEEEETTSEEEEEETTTCCEE-----------E-----
T ss_pred             EEeCCCC----------ceeEEEcCCCCCEEEEEEeC-CCCEEEEEeCCCeEEEEECCCCcEE-----------E-----
Confidence            9999864          55788899999999999999 6789999999999999999887521           1     


Q ss_pred             ccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCcccc
Q 004468          201 RCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSL  280 (751)
Q Consensus       201 ~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  280 (751)
                               ...+|...|.++.++| ++.+|++|+.|+.|++||+++.+....             +       .+|.. 
T Consensus       229 ---------~~~~h~~~v~~~~~~~-~g~~l~s~s~D~~v~vwd~~~~~~~~~-------------~-------~~h~~-  277 (410)
T 1vyh_C          229 ---------TFTGHREWVRMVRPNQ-DGTLIASCSNDQTVRVWVVATKECKAE-------------L-------REHRH-  277 (410)
T ss_dssp             ---------EEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEEE-------------E-------CCCSS-
T ss_pred             ---------EEeCCCccEEEEEECC-CCCEEEEEcCCCeEEEEECCCCceeeE-------------e-------cCCCc-
Confidence                     1123667899999999 589999999999999999987643222             1       23433 


Q ss_pred             ceEEEEEcCC--------------------CCEEEEEeCCCcEEEEECCC
Q 004468          281 HLTHVTFSPN--------------------GEEVLLSYSGEHVYLMDVNH  310 (751)
Q Consensus       281 ~vt~v~fspd--------------------g~~Ll~~s~d~~I~lwdl~~  310 (751)
                      .|++++|+|+                    |.+|++++.|+.|++||+.+
T Consensus       278 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~  327 (410)
T 1vyh_C          278 VVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVST  327 (410)
T ss_dssp             CEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTT
T ss_pred             eEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCC
Confidence            5999999996                    66899999999999998766

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=2.4e-39  Score=348.06  Aligned_cols=213  Identities=23%  Similarity=0.354  Sum_probs=182.0

Q ss_pred             ccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcE
Q 004468           40 LSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEV  119 (751)
Q Consensus        40 ~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V  119 (751)
                      ++..++|++|.+.|++++|+|+|++||||+.||+|+|||+.++..+..+ ..|...|.+++|+|+  +++|++|+.|+.|
T Consensus        45 ~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~-~~~~~~v~~~~~s~~--~~~l~s~~~d~~v  121 (340)
T 1got_B           45 MRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAI-PLRSSWVMTCAYAPS--GNYVACGGLDNIC  121 (340)
T ss_dssp             CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEE-ECSSSCEEEEEECTT--SSEEEEEETTCEE
T ss_pred             chhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEe-ecCCccEEEEEECCC--CCEEEEEeCCCeE
Confidence            4567899999999999999999999999999999999999999999888 789999999999999  8999999999999


Q ss_pred             EEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEe
Q 004468          120 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD  199 (751)
Q Consensus       120 ~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~  199 (751)
                      ++|++....+.      ......+.+|.+.|.++.|++ ++ .+++++.|++|++||+++++..                
T Consensus       122 ~iw~~~~~~~~------~~~~~~~~~h~~~v~~~~~~~-~~-~l~s~s~d~~i~~wd~~~~~~~----------------  177 (340)
T 1got_B          122 SIYNLKTREGN------VRVSRELAGHTGYLSCCRFLD-DN-QIVTSSGDTTCALWDIETGQQT----------------  177 (340)
T ss_dssp             EEEETTTCSBS------CEEEEEEECCSSCEEEEEEEE-TT-EEEEEETTSCEEEEETTTTEEE----------------
T ss_pred             EEEECccCCCc------ceeEEEecCCCccEEEEEECC-CC-cEEEEECCCcEEEEECCCCcEE----------------
Confidence            99999864321      134567889999999999998 43 5889999999999999876521                


Q ss_pred             cccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccc
Q 004468          200 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS  279 (751)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  279 (751)
                               .....|...|.+++|+| ++.+|++|+.|+.|++||+++......             +       .+|..
T Consensus       178 ---------~~~~~h~~~v~~~~~~~-~~~~l~sg~~d~~v~~wd~~~~~~~~~-------------~-------~~h~~  227 (340)
T 1got_B          178 ---------TTFTGHTGDVMSLSLAP-DTRLFVSGACDASAKLWDVREGMCRQT-------------F-------TGHES  227 (340)
T ss_dssp             ---------EEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCSEEEE-------------E-------CCCSS
T ss_pred             ---------EEEcCCCCceEEEEECC-CCCEEEEEeCCCcEEEEECCCCeeEEE-------------E-------cCCcC
Confidence                     11234677899999999 478999999999999999987653322             2       23444


Q ss_pred             cceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004468          280 LHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (751)
Q Consensus       280 ~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~  310 (751)
                       .|++++|+|+|++|++++.|+.|+|||+.+
T Consensus       228 -~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~  257 (340)
T 1got_B          228 -DINAICFFPNGNAFATGSDDATCRLFDLRA  257 (340)
T ss_dssp             -CEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred             -CEEEEEEcCCCCEEEEEcCCCcEEEEECCC
Confidence             599999999999999999999999999877

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=2.7e-39  Score=341.94  Aligned_cols=214  Identities=14%  Similarity=0.261  Sum_probs=183.3

Q ss_pred             cccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCc
Q 004468           39 RLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAE  118 (751)
Q Consensus        39 ~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~  118 (751)
                      ++++.++|++|.+.|++|+|+|+|++||+|+.||+|+|||+.++..+..+ .+|...|.+++|+|+  +++|++|+.|++
T Consensus         2 ~l~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~-~~~~~~v~~~~~~~~--~~~l~s~s~d~~   78 (304)
T 2ynn_A            2 KLDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSI-QVTETPVRAGKFIAR--KNWIIVGSDDFR   78 (304)
T ss_dssp             CCCCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEE-ECCSSCEEEEEEEGG--GTEEEEEETTSE
T ss_pred             cceeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEe-eccCCcEEEEEEeCC--CCEEEEECCCCE
Confidence            46778899999999999999999999999999999999999999999888 789999999999999  799999999999


Q ss_pred             EEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEE
Q 004468          119 VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILL  198 (751)
Q Consensus       119 V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~  198 (751)
                      |+|||+.++          +++..+.+|...|.+++|+| ++.+|++|+.||+|++||++++..+               
T Consensus        79 i~vwd~~~~----------~~~~~~~~h~~~v~~~~~~~-~~~~l~sgs~D~~v~lWd~~~~~~~---------------  132 (304)
T 2ynn_A           79 IRVFNYNTG----------EKVVDFEAHPDYIRSIAVHP-TKPYVLSGSDDLTVKLWNWENNWAL---------------  132 (304)
T ss_dssp             EEEEETTTC----------CEEEEEECCSSCEEEEEECS-SSSEEEEEETTSCEEEEEGGGTTEE---------------
T ss_pred             EEEEECCCC----------cEEEEEeCCCCcEEEEEEcC-CCCEEEEECCCCeEEEEECCCCcch---------------
Confidence            999999865          55788999999999999999 6689999999999999999875321               


Q ss_pred             ecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCcc
Q 004468          199 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRS  278 (751)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  278 (751)
                               .....+|...|.+++|+|.++.+|++|+.|+.|++||++...+...+.                   .++.
T Consensus       133 ---------~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~-------------------~~~~  184 (304)
T 2ynn_A          133 ---------EQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT-------------------TGQE  184 (304)
T ss_dssp             ---------EEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEE-------------------CCCT
T ss_pred             ---------hhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceec-------------------cCCc
Confidence                     111234677899999999778999999999999999998654322110                   1122


Q ss_pred             ccceEEEEEcC--CCCEEEEEeCCCcEEEEECCC
Q 004468          279 SLHLTHVTFSP--NGEEVLLSYSGEHVYLMDVNH  310 (751)
Q Consensus       279 ~~~vt~v~fsp--dg~~Ll~~s~d~~I~lwdl~~  310 (751)
                       ..+..+.|+|  ++.+|++++.|+.|+|||+.+
T Consensus       185 -~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~  217 (304)
T 2ynn_A          185 -RGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT  217 (304)
T ss_dssp             -TCEEEEEECCSTTCCEEEEEETTSEEEEEETTT
T ss_pred             -CcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCC
Confidence             2588899987  788999999999999999876

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=7.7e-40  Score=357.53  Aligned_cols=228  Identities=24%  Similarity=0.383  Sum_probs=188.9

Q ss_pred             ccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCC
Q 004468           38 RRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA  117 (751)
Q Consensus        38 ~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg  117 (751)
                      ..+.+.++|+||.+.|++++|+|+|++||||+.|++|+|||+.+++.+..+ .+|...|.+++|+|+  +++|++|+.|+
T Consensus        54 ~~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~-~~h~~~v~~~~~s~~--g~~las~~~d~  130 (380)
T 3iz6_a           54 TDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAI-KLHCPWVMECAFAPN--GQSVACGGLDS  130 (380)
T ss_dssp             CCCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEE-ECCCTTCCCCEECTT--SSEEEECCSSS
T ss_pred             ceeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEE-ecCCCCEEEEEECCC--CCEEEEeeCCC
Confidence            355678899999999999999999999999999999999999999999988 799999999999999  89999999999


Q ss_pred             cEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEE
Q 004468          118 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNIL  197 (751)
Q Consensus       118 ~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l  197 (751)
                      .|+|||+......   .........+.+|.+.|.++.|.|+++..|++|+.|++|++||+++++..           . .
T Consensus       131 ~v~iw~~~~~~~~---~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~-----------~-~  195 (380)
T 3iz6_a          131 ACSIFNLSSQADR---DGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRI-----------S-I  195 (380)
T ss_dssp             CCEEEECCCCSSC---CCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEE-----------E-E
T ss_pred             cEEEEECCCCccc---cCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEE-----------E-E
Confidence            9999999753211   11123456788999999999999977778999999999999999987532           0 0


Q ss_pred             EecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCc
Q 004468          198 LDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGR  277 (751)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  277 (751)
                      +.        .....+|...|.+++|+|.++.+|++|+.|+.|++||++....            ++..+       .+|
T Consensus       196 ~~--------~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~------------~~~~~-------~~h  248 (380)
T 3iz6_a          196 FG--------SEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSR------------AVRTY-------HGH  248 (380)
T ss_dssp             EC--------CCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCC------------CCEEE-------CCC
T ss_pred             ee--------cccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCc------------ceEEE-------CCc
Confidence            10        1122347788999999987789999999999999999984321            11222       345


Q ss_pred             cccceEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 004468          278 SSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (751)
Q Consensus       278 ~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~  311 (751)
                      .. .|++++|+|+|++|++++.|++|+|||+.++
T Consensus       249 ~~-~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~  281 (380)
T 3iz6_a          249 EG-DINSVKFFPDGQRFGTGSDDGTCRLFDMRTG  281 (380)
T ss_dssp             SS-CCCEEEECTTSSEEEEECSSSCEEEEETTTT
T ss_pred             CC-CeEEEEEecCCCeEEEEcCCCeEEEEECCCC
Confidence            44 5999999999999999999999999999884

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=1.7e-39  Score=349.97  Aligned_cols=220  Identities=17%  Similarity=0.246  Sum_probs=180.1

Q ss_pred             ccccccEEeccCCC-cEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEE--EEecccCCcceEEEEEecCCCCcEEEEEE
Q 004468           38 RRLSQERELEGHQG-CVNAISWNSKGSLLISGSDDTHINVWSYSSRKLL--HSIETGHSANVFCTKFVPETSDELVVSGA  114 (751)
Q Consensus        38 ~~~~~~~~L~gH~~-~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~--~~l~~~h~~~V~~v~fsp~s~~~~l~sgs  114 (751)
                      ..+.++++|.+|.+ .|++|+|+|+|++||+|+.|++|+|||+.++...  ..+..+|...|.+++|+|+  +++|++|+
T Consensus         3 ~~~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~--g~~l~s~s   80 (345)
T 3fm0_A            3 DSLVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPC--GNYLASAS   80 (345)
T ss_dssp             -CEEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTT--SSEEEEEE
T ss_pred             ccEEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCC--CCEEEEEE
Confidence            35677889999998 9999999999999999999999999999877643  3344689999999999999  89999999


Q ss_pred             CCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccc
Q 004468          115 GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECR  194 (751)
Q Consensus       115 ~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~  194 (751)
                      .|++|+|||+.....        +++..+.+|...|.+++|+| ++.+|++|+.|++|++||++.+...           
T Consensus        81 ~D~~v~iw~~~~~~~--------~~~~~~~~h~~~v~~v~~sp-~~~~l~s~s~D~~v~iwd~~~~~~~-----------  140 (345)
T 3fm0_A           81 FDATTCIWKKNQDDF--------ECVTTLEGHENEVKSVAWAP-SGNLLATCSRDKSVWVWEVDEEDEY-----------  140 (345)
T ss_dssp             TTSCEEEEEECCC-E--------EEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEEECTTSCE-----------
T ss_pred             CCCcEEEEEccCCCe--------EEEEEccCCCCCceEEEEeC-CCCEEEEEECCCeEEEEECCCCCCe-----------
Confidence            999999999975421        34678899999999999999 6789999999999999999875421           


Q ss_pred             eEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCcccccccccccc
Q 004468          195 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSE  274 (751)
Q Consensus       195 ~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (751)
                      ..           +.....|...|.+++|+|+ +.+|++|+.|+.|++||.+.....           +...+       
T Consensus       141 ~~-----------~~~~~~h~~~v~~~~~~p~-~~~l~s~s~d~~i~~w~~~~~~~~-----------~~~~~-------  190 (345)
T 3fm0_A          141 EC-----------VSVLNSHTQDVKHVVWHPS-QELLASASYDDTVKLYREEEDDWV-----------CCATL-------  190 (345)
T ss_dssp             EE-----------EEEECCCCSCEEEEEECSS-SSCEEEEETTSCEEEEEEETTEEE-----------EEEEE-------
T ss_pred             EE-----------EEEecCcCCCeEEEEECCC-CCEEEEEeCCCcEEEEEecCCCEE-----------EEEEe-------
Confidence            00           1112346778999999995 789999999999999998754311           11111       


Q ss_pred             CCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004468          275 HGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (751)
Q Consensus       275 ~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~  310 (751)
                      .+|.. .|++++|+|+|++|++++.|+.|+|||+..
T Consensus       191 ~~h~~-~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~  225 (345)
T 3fm0_A          191 EGHES-TVWSLAFDPSGQRLASCSDDRTVRIWRQYL  225 (345)
T ss_dssp             CCCSS-CEEEEEECTTSSEEEEEETTSCEEEEEEEC
T ss_pred             cCCCC-ceEEEEECCCCCEEEEEeCCCeEEEecccc
Confidence            34544 699999999999999999999999999644

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=1.2e-38  Score=337.45  Aligned_cols=212  Identities=20%  Similarity=0.331  Sum_probs=183.5

Q ss_pred             cccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCc
Q 004468           39 RLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAE  118 (751)
Q Consensus        39 ~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~  118 (751)
                      ...+..+|.+|.+.|++++|+|+|++||+|+.|+.|+||++.+++....+ .+|...|.+++|+|+  +++|++|+.|+.
T Consensus        12 ~~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~-~~h~~~v~~~~~~~~--~~~l~s~~~d~~   88 (312)
T 4ery_A           12 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSSD--SNLLVSASDDKT   88 (312)
T ss_dssp             CCEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEE-CCCSSCEEEEEECTT--SSEEEEEETTSE
T ss_pred             CceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhh-ccCCCceEEEEEcCC--CCEEEEECCCCE
Confidence            45677889999999999999999999999999999999999999988888 899999999999999  899999999999


Q ss_pred             EEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEE
Q 004468          119 VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILL  198 (751)
Q Consensus       119 V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~  198 (751)
                      |++||+...          +++..+.+|...|.+++|+| ++.+|++|+.||+|++||+++++..               
T Consensus        89 i~vwd~~~~----------~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~---------------  142 (312)
T 4ery_A           89 LKIWDVSSG----------KCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCL---------------  142 (312)
T ss_dssp             EEEEETTTC----------CEEEEEECCSSCEEEEEECS-SSSEEEEEETTSCEEEEETTTCCEE---------------
T ss_pred             EEEEECCCC----------cEEEEEcCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCEEE---------------
Confidence            999999864          55788899999999999999 6789999999999999999876521               


Q ss_pred             ecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCcc
Q 004468          199 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRS  278 (751)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  278 (751)
                                .....|...|.+++|+| ++.+|++|+.|+.|++||+++.+.+..+.                    .+.
T Consensus       143 ----------~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~--------------------~~~  191 (312)
T 4ery_A          143 ----------KTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTASGQCLKTLI--------------------DDD  191 (312)
T ss_dssp             ----------EEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEEEEC--------------------CSS
T ss_pred             ----------EEecCCCCcEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeeEEe--------------------ccC
Confidence                      11123567899999999 47899999999999999998765432210                    111


Q ss_pred             ccceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004468          279 SLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (751)
Q Consensus       279 ~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~  310 (751)
                      ...++.++|+|++++|++++.|+.|++||+.+
T Consensus       192 ~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~  223 (312)
T 4ery_A          192 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSK  223 (312)
T ss_dssp             CCCEEEEEECTTSSEEEEEETTTEEEEEETTT
T ss_pred             CCceEEEEECCCCCEEEEEcCCCeEEEEECCC
Confidence            22589999999999999999999999999877

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=9.6e-39  Score=371.20  Aligned_cols=277  Identities=15%  Similarity=0.141  Sum_probs=201.5

Q ss_pred             ccccEEeccCCCcEEEEEECCCCC-EEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCc
Q 004468           40 LSQERELEGHQGCVNAISWNSKGS-LLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAE  118 (751)
Q Consensus        40 ~~~~~~L~gH~~~V~~l~~s~dg~-~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~  118 (751)
                      .+...+|.+|.+.|++++|+|++. +||||+.|++|+|||..+++++..+ .+|...|.+++|+|+  +++|+||+.|++
T Consensus       137 ~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l-~~H~~~V~~v~fspd--g~~las~s~D~~  213 (611)
T 1nr0_A          137 GTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTF-GEHTKFVHSVRYNPD--GSLFASTGGDGT  213 (611)
T ss_dssp             CCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEE-CCCSSCEEEEEECTT--SSEEEEEETTSC
T ss_pred             CCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeee-ccccCceEEEEECCC--CCEEEEEECCCc
Confidence            345678999999999999999987 6999999999999999999888888 899999999999999  899999999999


Q ss_pred             EEEEECCCCCCCCCCCCCCCCceeec-------ccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCC--
Q 004468          119 VRLFNLSRFSGRGLDDNAITPSALYQ-------CHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSS--  189 (751)
Q Consensus       119 V~vwd~~~~~~~~~~~~~~~~~~~~~-------~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~--  189 (751)
                      |+|||+..+          +++..+.       +|.+.|.+++|+| ++.+|++++.|++|++||+++++........  
T Consensus       214 i~lwd~~~g----------~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~  282 (611)
T 1nr0_A          214 IVLYNGVDG----------TKTGVFEDDSLKNVAHSGSVFGLTWSP-DGTKIASASADKTIKIWNVATLKVEKTIPVGTR  282 (611)
T ss_dssp             EEEEETTTC----------CEEEECBCTTSSSCSSSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEECCSS
T ss_pred             EEEEECCCC----------cEeeeeccccccccccCCCEEEEEECC-CCCEEEEEeCCCeEEEEeCCCCceeeeecCCCC
Confidence            999999864          3344442       7999999999999 6789999999999999999986533111000  


Q ss_pred             ------------------CCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCc
Q 004468          190 ------------------HQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPL  251 (751)
Q Consensus       190 ------------------~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~  251 (751)
                                        ..+....+|+...+..  .....+|...|++++|+| ++.+|++++.|+.|++||+.+....
T Consensus       283 ~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~--~~~~~gh~~~v~~l~~sp-dg~~l~s~s~D~~v~~Wd~~~~~~~  359 (611)
T 1nr0_A          283 IEDQQLGIIWTKQALVSISANGFINFVNPELGSI--DQVRYGHNKAITALSSSA-DGKTLFSADAEGHINSWDISTGISN  359 (611)
T ss_dssp             GGGCEEEEEECSSCEEEEETTCCEEEEETTTTEE--EEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEE
T ss_pred             ccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCc--ceEEcCCCCCEEEEEEeC-CCCEEEEEeCCCcEEEEECCCCcee
Confidence                              0111223444443322  223346888999999999 5899999999999999999876533


Q ss_pred             cccCCCCC---------CCC---------ccc--------------------------cccccc----------------
Q 004468          252 TSCQKRMS---------PPP---------CVN--------------------------YFCPMH----------------  271 (751)
Q Consensus       252 ~~~~~~~~---------~~~---------~~~--------------------------~~~~~~----------------  271 (751)
                      ..+.....         +..         .++                          .+.+..                
T Consensus       360 ~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~  439 (611)
T 1nr0_A          360 RVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSH  439 (611)
T ss_dssp             ECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEET
T ss_pred             eecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeC
Confidence            22110000         000         000                          000000                


Q ss_pred             --cccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcc-eeeeecCCCceeEEeCCCCC
Q 004468          272 --LSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGR-AMRYTVGDASKIMSFTPTLN  334 (751)
Q Consensus       272 --~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~-~~~~~~~~~~~~~~~sp~~~  334 (751)
                        +....+ ...+++++|+|||++|++++.|+.|+|||+.++... .....+...+..++|+|+..
T Consensus       440 ~~~~~~~~-~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~  504 (611)
T 1nr0_A          440 GKLTEVPI-SYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGA  504 (611)
T ss_dssp             TEEEEEEC-SSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSS
T ss_pred             Cceeeeec-CCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeeccCCCCceEEEEECCCCC
Confidence              000001 235889999999999999999999999999875321 12245666778888888654

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=7.6e-39  Score=341.36  Aligned_cols=208  Identities=18%  Similarity=0.295  Sum_probs=173.3

Q ss_pred             ccEEeccCCCcEEEEEECCC----CCEEEEEeCCCcEEEEeCCCCeE--EEEecccCCcceEEEEEecCCCCcEEEEEEC
Q 004468           42 QERELEGHQGCVNAISWNSK----GSLLISGSDDTHINVWSYSSRKL--LHSIETGHSANVFCTKFVPETSDELVVSGAG  115 (751)
Q Consensus        42 ~~~~L~gH~~~V~~l~~s~d----g~~LaSgs~Dg~I~IWd~~~~~~--~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~  115 (751)
                      +.+.+++|.+.|++|+|+|+    +.+||||+.|++|+||++..+..  ...+ .+|...|.+++|+|+  +.++++|+.
T Consensus        24 ~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l-~gh~~~v~~~~~~~~--~~~l~s~s~  100 (321)
T 3ow8_A           24 LFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSL-EGHQLGVVSVDISHT--LPIAASSSL  100 (321)
T ss_dssp             EEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEE-CCCSSCEEEEEECSS--SSEEEEEET
T ss_pred             eeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeee-ccCCCCEEEEEECCC--CCEEEEEeC
Confidence            34677899999999999984    67999999999999999877654  3345 899999999999999  799999999


Q ss_pred             CCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccce
Q 004468          116 DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRN  195 (751)
Q Consensus       116 Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~  195 (751)
                      |++|++||+..+          +++..+..|...+.+++|+| ++.+|++++.||+|++||+++++..            
T Consensus       101 D~~i~lWd~~~~----------~~~~~~~~~~~~~~~~~~sp-dg~~l~~g~~dg~v~i~~~~~~~~~------------  157 (321)
T 3ow8_A          101 DAHIRLWDLENG----------KQIKSIDAGPVDAWTLAFSP-DSQYLATGTHVGKVNIFGVESGKKE------------  157 (321)
T ss_dssp             TSEEEEEETTTT----------EEEEEEECCTTCCCCEEECT-TSSEEEEECTTSEEEEEETTTCSEE------------
T ss_pred             CCcEEEEECCCC----------CEEEEEeCCCccEEEEEECC-CCCEEEEEcCCCcEEEEEcCCCcee------------
Confidence            999999999864          45778888999999999999 6789999999999999999876521            


Q ss_pred             EEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccC
Q 004468          196 ILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEH  275 (751)
Q Consensus       196 ~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (751)
                        ..           ...+...|.+++|+| ++++|++|+.|+.|++||+++.+.+..+                    .
T Consensus       158 --~~-----------~~~~~~~v~~~~~sp-dg~~lasg~~dg~i~iwd~~~~~~~~~~--------------------~  203 (321)
T 3ow8_A          158 --YS-----------LDTRGKFILSIAYSP-DGKYLASGAIDGIINIFDIATGKLLHTL--------------------E  203 (321)
T ss_dssp             --EE-----------EECSSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEE--------------------C
T ss_pred             --EE-----------ecCCCceEEEEEECC-CCCEEEEEcCCCeEEEEECCCCcEEEEE--------------------c
Confidence              00           112445799999999 5899999999999999999876543222                    2


Q ss_pred             CccccceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004468          276 GRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (751)
Q Consensus       276 g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~  310 (751)
                      +|.. .|++++|+|++++|++++.|+.|+|||+.+
T Consensus       204 ~h~~-~v~~l~~spd~~~l~s~s~dg~i~iwd~~~  237 (321)
T 3ow8_A          204 GHAM-PIRSLTFSPDSQLLVTASDDGYIKIYDVQH  237 (321)
T ss_dssp             CCSS-CCCEEEECTTSCEEEEECTTSCEEEEETTT
T ss_pred             ccCC-ceeEEEEcCCCCEEEEEcCCCeEEEEECCC
Confidence            3433 599999999999999999999999999876

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=2.3e-38  Score=342.45  Aligned_cols=217  Identities=19%  Similarity=0.287  Sum_probs=182.8

Q ss_pred             ccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcE
Q 004468           40 LSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEV  119 (751)
Q Consensus        40 ~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V  119 (751)
                      ++..++|+||.+.|++++|+|++++||||+.|++|+|||..+++....+ ..|...|.+++|+|+  +.+|++|+.|+.|
T Consensus        54 ~~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~-~~~~~~v~~~~~sp~--g~~lasg~~d~~i  130 (354)
T 2pbi_B           54 MKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAV-TMPCTWVMACAYAPS--GCAIACGGLDNKC  130 (354)
T ss_dssp             CCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-ECSSSCCCEEEECTT--SSEEEEESTTSEE
T ss_pred             cEEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEE-ecCCCCEEEEEECCC--CCEEEEeeCCCCE
Confidence            3567899999999999999999999999999999999999999888888 789999999999999  8999999999999


Q ss_pred             EEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEe
Q 004468          120 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD  199 (751)
Q Consensus       120 ~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~  199 (751)
                      ++|++.......    .......+.+|...|.+++|+| ++..|++++.||+|++||+++++..                
T Consensus       131 ~v~~~~~~~~~~----~~~~~~~~~~h~~~v~~~~~~~-~~~~l~t~s~D~~v~lwd~~~~~~~----------------  189 (354)
T 2pbi_B          131 SVYPLTFDKNEN----MAAKKKSVAMHTNYLSACSFTN-SDMQILTASGDGTCALWDVESGQLL----------------  189 (354)
T ss_dssp             EEEECCCCTTCC----SGGGCEEEEECSSCEEEEEECS-SSSEEEEEETTSEEEEEETTTCCEE----------------
T ss_pred             EEEEEecccccc----ccccceeeeccCCcEEEEEEeC-CCCEEEEEeCCCcEEEEeCCCCeEE----------------
Confidence            999997532111    1134567788999999999999 6688999999999999999887521                


Q ss_pred             cccCceecccCCCCCccceEEEEEeCC-CCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCcc
Q 004468          200 LRCGAKRSLADPPKQTLSLKSCDISST-RPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRS  278 (751)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~v~~i~~sp~-~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  278 (751)
                               ....+|...|.+++|+|. ++.+|++|+.|+.|++||+++.+.+..             +       .+|.
T Consensus       190 ---------~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~-------------~-------~~h~  240 (354)
T 2pbi_B          190 ---------QSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQA-------------F-------ETHE  240 (354)
T ss_dssp             ---------EEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEE-------------E-------CCCS
T ss_pred             ---------EEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEE-------------e-------cCCC
Confidence                     111236678999999885 358999999999999999997653322             2       2344


Q ss_pred             ccceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004468          279 SLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (751)
Q Consensus       279 ~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~  310 (751)
                      . .|++++|+|++.+|++++.|+.|++||+..
T Consensus       241 ~-~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~  271 (354)
T 2pbi_B          241 S-DVNSVRYYPSGDAFASGSDDATCRLYDLRA  271 (354)
T ss_dssp             S-CEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred             C-CeEEEEEeCCCCEEEEEeCCCeEEEEECCC
Confidence            4 599999999999999999999999999877

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=3.1e-38  Score=341.90  Aligned_cols=212  Identities=17%  Similarity=0.178  Sum_probs=159.3

Q ss_pred             EeccCCCcEEEEEECCCCCEEEEEeC------CCcEEEEeCCCCeEEEEe---cccCCcceEEEEEecCCCCcEEEEEEC
Q 004468           45 ELEGHQGCVNAISWNSKGSLLISGSD------DTHINVWSYSSRKLLHSI---ETGHSANVFCTKFVPETSDELVVSGAG  115 (751)
Q Consensus        45 ~L~gH~~~V~~l~~s~dg~~LaSgs~------Dg~I~IWd~~~~~~~~~l---~~~h~~~V~~v~fsp~s~~~~l~sgs~  115 (751)
                      ...+|.+.|++|+|+|||++|||||.      |+.|++|+..++.....+   ..+|...|.+++|+|+  + .+++++.
T Consensus        37 ~p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d--~-~~l~~s~  113 (357)
T 4g56_B           37 APACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSE--K-GILVASD  113 (357)
T ss_dssp             ---CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETT--T-EEEEEET
T ss_pred             CcccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCC--C-CEEEEEC
Confidence            34679999999999999999999997      778999998776543322   1478999999999998  4 5667889


Q ss_pred             CCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccce
Q 004468          116 DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRN  195 (751)
Q Consensus       116 Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~  195 (751)
                      |++|+|||+.++....      .......+|...|++++|+| ++.+|++|+.||+|++||+++++..            
T Consensus       114 dg~v~lWd~~~~~~~~------~~~~~~~~h~~~V~~v~~sp-dg~~l~sgs~dg~v~iwd~~~~~~~------------  174 (357)
T 4g56_B          114 SGAVELWEILEKESLL------VNKFAKYEHDDIVKTLSVFS-DGTQAVSGGKDFSVKVWDLSQKAVL------------  174 (357)
T ss_dssp             TSCEEEC--------C------CCCEEECCCSSCEEEEEECS-SSSEEEEEETTSCEEEEETTTTEEE------------
T ss_pred             CCEEEEeeccccceeE------EEeeccCCCCCCEEEEEECC-CCCEEEEEeCCCeEEEEECCCCcEE------------
Confidence            9999999998653221      12234568999999999999 6789999999999999999886521            


Q ss_pred             EEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccC
Q 004468          196 ILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEH  275 (751)
Q Consensus       196 ~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (751)
                                   .....|...|++++|+|++..++++++.|+.|++||+++.++...+..                  .
T Consensus       175 -------------~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~------------------~  223 (357)
T 4g56_B          175 -------------KSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDF------------------C  223 (357)
T ss_dssp             -------------EEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCC------------------T
T ss_pred             -------------EEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeee------------------c
Confidence                         112346778999999997667899999999999999998764432210                  1


Q ss_pred             CccccceEEEEEcCCC-CEEEEEeCCCcEEEEECCC
Q 004468          276 GRSSLHLTHVTFSPNG-EEVLLSYSGEHVYLMDVNH  310 (751)
Q Consensus       276 g~~~~~vt~v~fspdg-~~Ll~~s~d~~I~lwdl~~  310 (751)
                      .+ ...+++++|+|++ .+|++++.|+.|+|||+.+
T Consensus       224 ~~-~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~  258 (357)
T 4g56_B          224 AS-DTIPTSVTWHPEKDDTFACGDETGNVSLVNIKN  258 (357)
T ss_dssp             TC-CSCEEEEEECTTSTTEEEEEESSSCEEEEESSC
T ss_pred             cc-cccccchhhhhcccceEEEeecccceeEEECCC
Confidence            12 2259999999985 5788899999999999876

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=2.8e-38  Score=340.17  Aligned_cols=208  Identities=17%  Similarity=0.168  Sum_probs=159.4

Q ss_pred             ccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCC-----------eEEEEecccCCcceEEEEEecCCCCcEEEEEEC
Q 004468           47 EGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSR-----------KLLHSIETGHSANVFCTKFVPETSDELVVSGAG  115 (751)
Q Consensus        47 ~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~-----------~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~  115 (751)
                      ..|...|.+++|+|||++|++++ |+++++||....           ...... ..|...|.+++|+|+   ..|++|+.
T Consensus        27 ~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~d---~~l~~~s~  101 (344)
T 4gqb_B           27 ACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAG-VQTEAGVADLTWVGE---RGILVASD  101 (344)
T ss_dssp             SSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEE-EEESSCEEEEEEETT---TEEEEEET
T ss_pred             ccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeee-eccCCCEEEEEEeCC---CeEEEEEC
Confidence            45778899999999999999988 678888873210           011111 246678999999998   47889999


Q ss_pred             CCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccce
Q 004468          116 DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRN  195 (751)
Q Consensus       116 Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~  195 (751)
                      ||+|+|||+.++....      .....+.+|.+.|++++|+| ++++|++|+.||+|++||+++++..            
T Consensus       102 dg~v~lWd~~~~~~~~------~~~~~~~~H~~~V~~v~~sp-dg~~l~sgs~d~~i~iwd~~~~~~~------------  162 (344)
T 4gqb_B          102 SGAVELWELDENETLI------VSKFCKYEHDDIVSTVSVLS-SGTQAVSGSKDICIKVWDLAQQVVL------------  162 (344)
T ss_dssp             TSEEEEEEECTTSSCE------EEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEE------------
T ss_pred             CCEEEEEeccCCCcee------EeeccccCCCCCEEEEEECC-CCCEEEEEeCCCeEEEEECCCCcEE------------
Confidence            9999999998653211      11233558999999999999 6789999999999999999886521            


Q ss_pred             EEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccC
Q 004468          196 ILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEH  275 (751)
Q Consensus       196 ~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (751)
                                   ....+|...|++++|+|++..+|++|+.|+.|++||+++.+....+..                  .
T Consensus       163 -------------~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~------------------~  211 (344)
T 4gqb_B          163 -------------SSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGC------------------S  211 (344)
T ss_dssp             -------------EEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC--------------------
T ss_pred             -------------EEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeec------------------c
Confidence                         122347789999999997767999999999999999998765433210                  1


Q ss_pred             CccccceEEEEEcCC-CCEEEEEeCCCcEEEEECCC
Q 004468          276 GRSSLHLTHVTFSPN-GEEVLLSYSGEHVYLMDVNH  310 (751)
Q Consensus       276 g~~~~~vt~v~fspd-g~~Ll~~s~d~~I~lwdl~~  310 (751)
                       .....+++++|+|+ +++|++|+.|+.|+|||+.+
T Consensus       212 -~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~  246 (344)
T 4gqb_B          212 -APGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKS  246 (344)
T ss_dssp             ---CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC
T ss_pred             -eeeccceeeeecCCCCcceEEeccCCcEEEEECCC
Confidence             11224899999995 56788899999999999876

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=1.3e-37  Score=331.50  Aligned_cols=212  Identities=19%  Similarity=0.303  Sum_probs=177.8

Q ss_pred             ccccccEEeccCCCcEEEEEECCCC-CEEEEEeCCCcEEEEeCCC-----CeEEEEecccCCcceEEEEEecCCCCcEEE
Q 004468           38 RRLSQERELEGHQGCVNAISWNSKG-SLLISGSDDTHINVWSYSS-----RKLLHSIETGHSANVFCTKFVPETSDELVV  111 (751)
Q Consensus        38 ~~~~~~~~L~gH~~~V~~l~~s~dg-~~LaSgs~Dg~I~IWd~~~-----~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~  111 (751)
                      +.+.+..+|+||.+.|++|+|+|++ ++|+||+.|++|+||++..     +..+..+ .+|...|.+++|+|+  +.+|+
T Consensus         5 ~~~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~-~~h~~~v~~~~~s~d--g~~l~   81 (319)
T 3frx_A            5 EVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSF-KGHSHIVQDCTLTAD--GAYAL   81 (319)
T ss_dssp             EEEEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEE-ECCSSCEEEEEECTT--SSEEE
T ss_pred             eEEEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEE-eCCcccEEEEEECCC--CCEEE
Confidence            3466778999999999999999965 8999999999999999853     3345666 799999999999999  89999


Q ss_pred             EEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCC
Q 004468          112 SGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQ  191 (751)
Q Consensus       112 sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~  191 (751)
                      +|+.|++|+|||+.++          +++..+.+|...|.+++|+| ++.+|++|+.||+|++||++...          
T Consensus        82 s~s~D~~v~~wd~~~~----------~~~~~~~~h~~~v~~~~~~~-~~~~l~s~s~D~~i~vwd~~~~~----------  140 (319)
T 3frx_A           82 SASWDKTLRLWDVATG----------ETYQRFVGHKSDVMSVDIDK-KASMIISGSRDKTIKVWTIKGQC----------  140 (319)
T ss_dssp             EEETTSEEEEEETTTT----------EEEEEEECCSSCEEEEEECT-TSCEEEEEETTSCEEEEETTSCE----------
T ss_pred             EEeCCCEEEEEECCCC----------CeeEEEccCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCe----------
Confidence            9999999999999865          55788999999999999999 67899999999999999986431          


Q ss_pred             ccceEEEecccCceecccCCCCCccceEEEEEeCC-----CCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCcccc
Q 004468          192 ECRNILLDLRCGAKRSLADPPKQTLSLKSCDISST-----RPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNY  266 (751)
Q Consensus       192 ~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~-----~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~  266 (751)
                                      +....+|...|.++.|+|.     ++.+|++++.|+.|++||++..+....             
T Consensus       141 ----------------~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~-------------  191 (319)
T 3frx_A          141 ----------------LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEAD-------------  191 (319)
T ss_dssp             ----------------EEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEE-------------
T ss_pred             ----------------EEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhhee-------------
Confidence                            1112236678999999984     245899999999999999986542211             


Q ss_pred             ccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004468          267 FCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (751)
Q Consensus       267 ~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~  310 (751)
                      +       .+|.. .|++++|+|+|++|++++.|+.|+|||+.+
T Consensus       192 ~-------~~h~~-~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~  227 (319)
T 3frx_A          192 F-------IGHNS-NINTLTASPDGTLIASAGKDGEIMLWNLAA  227 (319)
T ss_dssp             E-------CCCCS-CEEEEEECTTSSEEEEEETTCEEEEEETTT
T ss_pred             e-------cCCCC-cEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Confidence            1       23444 699999999999999999999999999877

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=1.2e-37  Score=361.85  Aligned_cols=229  Identities=16%  Similarity=0.158  Sum_probs=183.7

Q ss_pred             cccccchhhhccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCC--eEEEEecccCCcceEEEEEecCC
Q 004468           28 HSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSR--KLLHSIETGHSANVFCTKFVPET  105 (751)
Q Consensus        28 ~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~--~~~~~l~~~h~~~V~~v~fsp~s  105 (751)
                      +.+.+|+.  ...+...+|.+|.+.|++++|+|+|++||||+.|++|+|||+.++  .....+ .+|.+.|.+++|+|+ 
T Consensus        39 ~~v~l~~~--~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~-~~~~~~v~~v~fs~d-  114 (611)
T 1nr0_A           39 TSVYTVPV--GSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTI-PVFSGPVKDISWDSE-  114 (611)
T ss_dssp             TEEEEEET--TCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEE-ECSSSCEEEEEECTT-
T ss_pred             CEEEEecC--CCcccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEee-cccCCceEEEEECCC-
Confidence            45566653  355678899999999999999999999999999999999998654  344455 789999999999999 


Q ss_pred             CCcEEEEEECC----CcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCC
Q 004468          106 SDELVVSGAGD----AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGS  181 (751)
Q Consensus       106 ~~~~l~sgs~D----g~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~  181 (751)
                       +++|++++.+    +.|++||..            .+...+.+|...|.+++|+|+++..|++|+.|++|++||..+.+
T Consensus       115 -g~~l~~~~~~~~~~~~v~~wd~~------------~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~  181 (611)
T 1nr0_A          115 -SKRIAAVGEGRERFGHVFLFDTG------------TSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFK  181 (611)
T ss_dssp             -SCEEEEEECCSSCSEEEEETTTC------------CBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBE
T ss_pred             -CCEEEEEECCCCceeEEEEeeCC------------CCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCe
Confidence             7899988865    478888854            33667889999999999999666679999999999999976543


Q ss_pred             CCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCC
Q 004468          182 SCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPP  261 (751)
Q Consensus       182 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~  261 (751)
                      .                         +....+|...|.+++|+| ++.+|++|+.|++|++||+.+++.+..+.      
T Consensus       182 ~-------------------------~~~l~~H~~~V~~v~fsp-dg~~las~s~D~~i~lwd~~~g~~~~~~~------  229 (611)
T 1nr0_A          182 F-------------------------KSTFGEHTKFVHSVRYNP-DGSLFASTGGDGTIVLYNGVDGTKTGVFE------  229 (611)
T ss_dssp             E-------------------------EEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEEECB------
T ss_pred             E-------------------------eeeeccccCceEEEEECC-CCCEEEEEECCCcEEEEECCCCcEeeeec------
Confidence            1                         111234778999999999 48999999999999999998765433221      


Q ss_pred             CccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCCc
Q 004468          262 PCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGG  313 (751)
Q Consensus       262 ~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~  313 (751)
                             ...+...+|.. .|++++|+|+|++|++++.|++|+|||+.++..
T Consensus       230 -------~~~~~~~~h~~-~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~  273 (611)
T 1nr0_A          230 -------DDSLKNVAHSG-SVFGLTWSPDGTKIASASADKTIKIWNVATLKV  273 (611)
T ss_dssp             -------CTTSSSCSSSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTTEE
T ss_pred             -------cccccccccCC-CEEEEEECCCCCEEEEEeCCCeEEEEeCCCCce
Confidence                   00111124554 699999999999999999999999999998643

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.2e-37  Score=330.04  Aligned_cols=224  Identities=15%  Similarity=0.193  Sum_probs=170.6

Q ss_pred             ccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCC--eEEEEeccc-CCcceEEEEEecCCCCcEEEEEE
Q 004468           38 RRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSR--KLLHSIETG-HSANVFCTKFVPETSDELVVSGA  114 (751)
Q Consensus        38 ~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~--~~~~~l~~~-h~~~V~~v~fsp~s~~~~l~sgs  114 (751)
                      ..++++++|++|.+.|++++|+++  +||+|+.|++|+|||+..+  ..+..+..+ |...|.+++|+|+  +++|++|+
T Consensus         2 ~~~~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~--~~~las~s   77 (330)
T 2hes_X            2 ASINLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPH--TSLLAAGS   77 (330)
T ss_dssp             -CCEEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTT--SSEEEEEE
T ss_pred             cccccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCC--CCEEEEEe
Confidence            356678899999999999999987  9999999999999999865  445555234 9999999999999  79999999


Q ss_pred             CCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccc
Q 004468          115 GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECR  194 (751)
Q Consensus       115 ~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~  194 (751)
                      .|++|+|||+......   ....+++..+.+|...|.+++|+| ++.+|++|+.|++|++||++.....       ..+ 
T Consensus        78 ~D~~v~iw~~~~~~~~---~~~~~~~~~~~~h~~~V~~v~~sp-~g~~las~s~D~~v~iwd~~~~~~~-------~~~-  145 (330)
T 2hes_X           78 FDSTVSIWAKEESADR---TFEMDLLAIIEGHENEVKGVAWSN-DGYYLATCSRDKSVWIWETDESGEE-------YEC-  145 (330)
T ss_dssp             TTSCEEEEEC----------CCCEEEEEEC----CEEEEEECT-TSCEEEEEETTSCEEEEECCTTCCC-------CEE-
T ss_pred             CCCcEEEEEcccCcCc---cccceeEEEEcCCCCcEEEEEECC-CCCEEEEEeCCCEEEEEeccCCCCC-------eEE-
Confidence            9999999999642110   001245677899999999999999 6789999999999999999643210       000 


Q ss_pred             eEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCcccccccccccc
Q 004468          195 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSE  274 (751)
Q Consensus       195 ~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (751)
                                   +.....|...|.+++|+|+ +.+|++|+.|++|++||.+....           .++..+       
T Consensus       146 -------------~~~~~~h~~~v~~v~~~p~-~~~l~s~s~D~~i~iW~~~~~~~-----------~~~~~~-------  193 (330)
T 2hes_X          146 -------------ISVLQEHSQDVKHVIWHPS-EALLASSSYDDTVRIWKDYDDDW-----------ECVAVL-------  193 (330)
T ss_dssp             -------------EEEECCCSSCEEEEEECSS-SSEEEEEETTSCEEEEEEETTEE-----------EEEEEE-------
T ss_pred             -------------EEEeccCCCceEEEEECCC-CCEEEEEcCCCeEEEEECCCCCe-----------eEEEEc-------
Confidence                         1112346778999999994 78999999999999999865310           112222       


Q ss_pred             CCccccceEEEEEcCC--CCEEEEEeCCCcEEEEECCC
Q 004468          275 HGRSSLHLTHVTFSPN--GEEVLLSYSGEHVYLMDVNH  310 (751)
Q Consensus       275 ~g~~~~~vt~v~fspd--g~~Ll~~s~d~~I~lwdl~~  310 (751)
                      .+|.. .|++++|+|+  +.+|++++.|++|+|||+..
T Consensus       194 ~~h~~-~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~  230 (330)
T 2hes_X          194 NGHEG-TVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMG  230 (330)
T ss_dssp             CCCSS-CEEEEEECCSSSSCEEEEEETTSCEEEEEEEE
T ss_pred             cCCCC-cEEEEEecCCCCeeEEEEEeCCCeEEEEEecC
Confidence            34544 6999999999  77899999999999999765

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=4.9e-37  Score=336.87  Aligned_cols=208  Identities=19%  Similarity=0.302  Sum_probs=168.8

Q ss_pred             cCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCC------------------cceEEEEEecCCCCcE
Q 004468           48 GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHS------------------ANVFCTKFVPETSDEL  109 (751)
Q Consensus        48 gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~------------------~~V~~v~fsp~s~~~~  109 (751)
                      +|.+.|++++|+|+|++||+|+ |++++||++.+++.+..+ ..|.                  ..|.+++|+|+  +++
T Consensus        62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d--g~~  137 (393)
T 1erj_A           62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARL-SDDSAANKDPENLNTSSSPSSDLYIRSVCFSPD--GKF  137 (393)
T ss_dssp             ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEE-CC-----------------CCCCBEEEEEECTT--SSE
T ss_pred             CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEe-cCccccccccccccccccCCCceeEEEEEECCC--CCE
Confidence            6999999999999999999987 689999999999888777 4443                  24999999999  899


Q ss_pred             EEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCC
Q 004468          110 VVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSS  189 (751)
Q Consensus       110 l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~  189 (751)
                      |++|+.|++|+|||+...          +.+..+.+|...|.+++|+| ++.+|++++.|++|++||+++++..      
T Consensus       138 l~s~~~d~~i~iwd~~~~----------~~~~~~~~h~~~v~~~~~~p-~~~~l~s~s~d~~v~iwd~~~~~~~------  200 (393)
T 1erj_A          138 LATGAEDRLIRIWDIENR----------KIVMILQGHEQDIYSLDYFP-SGDKLVSGSGDRTVRIWDLRTGQCS------  200 (393)
T ss_dssp             EEEEETTSCEEEEETTTT----------EEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEE------
T ss_pred             EEEEcCCCeEEEEECCCC----------cEEEEEccCCCCEEEEEEcC-CCCEEEEecCCCcEEEEECCCCeeE------
Confidence            999999999999999864          45778899999999999999 6689999999999999999886521      


Q ss_pred             CCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccc
Q 004468          190 HQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCP  269 (751)
Q Consensus       190 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~  269 (751)
                           .. +.              +...+.+++|+|.++.+|++|+.|+.|++||+++...+..+..             
T Consensus       201 -----~~-~~--------------~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~-------------  247 (393)
T 1erj_A          201 -----LT-LS--------------IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDS-------------  247 (393)
T ss_dssp             -----EE-EE--------------CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC--------------
T ss_pred             -----EE-EE--------------cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecc-------------
Confidence                 01 10              2346899999997789999999999999999987654332211             


Q ss_pred             cccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004468          270 MHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (751)
Q Consensus       270 ~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~  310 (751)
                      ......+|.. .|++++|+|+|++|++++.|+.|+|||+.+
T Consensus       248 ~~~~~~~h~~-~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~  287 (393)
T 1erj_A          248 ENESGTGHKD-SVYSVVFTRDGQSVVSGSLDRSVKLWNLQN  287 (393)
T ss_dssp             -----CCCSS-CEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred             cccCCCCCCC-CEEEEEECCCCCEEEEEeCCCEEEEEECCC
Confidence            0011123444 699999999999999999999999999877

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=5.1e-36  Score=322.39  Aligned_cols=213  Identities=20%  Similarity=0.283  Sum_probs=175.1

Q ss_pred             cccccEEeccCCCcEEEEEE-----CC-CCCEEEEEeCCCcEEEEeCCCC-------eEEEEecccCCcceEEEEEecCC
Q 004468           39 RLSQERELEGHQGCVNAISW-----NS-KGSLLISGSDDTHINVWSYSSR-------KLLHSIETGHSANVFCTKFVPET  105 (751)
Q Consensus        39 ~~~~~~~L~gH~~~V~~l~~-----s~-dg~~LaSgs~Dg~I~IWd~~~~-------~~~~~l~~~h~~~V~~v~fsp~s  105 (751)
                      .+.+..+|+||++.|++|+|     ++ ++++||||+.|++|+|||+.+.       .....+ .+|...|.+++|+|+ 
T Consensus        10 ~~~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l-~~h~~~V~~~~~~~~-   87 (343)
T 2xzm_R           10 QVVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKAL-TGHNHFVSDLALSQE-   87 (343)
T ss_dssp             EEEEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEE-CCCSSCEEEEEECSS-
T ss_pred             EeeeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchh-ccCCCceEEEEECCC-
Confidence            45667899999999999999     76 9999999999999999998643       345556 899999999999999 


Q ss_pred             CCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCC
Q 004468          106 SDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPP  185 (751)
Q Consensus       106 ~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~  185 (751)
                       +.+|++|+.|++|+|||+.++          +++..+.+|...|.+++|+| ++.+|++++.|++|++||++....   
T Consensus        88 -~~~l~s~s~D~~v~lwd~~~~----------~~~~~~~~h~~~v~~v~~sp-~~~~l~s~~~d~~i~~wd~~~~~~---  152 (343)
T 2xzm_R           88 -NCFAISSSWDKTLRLWDLRTG----------TTYKRFVGHQSEVYSVAFSP-DNRQILSAGAEREIKLWNILGECK---  152 (343)
T ss_dssp             -TTEEEEEETTSEEEEEETTSS----------CEEEEEECCCSCEEEEEECS-STTEEEEEETTSCEEEEESSSCEE---
T ss_pred             -CCEEEEEcCCCcEEEEECCCC----------cEEEEEcCCCCcEEEEEECC-CCCEEEEEcCCCEEEEEeccCCce---
Confidence             799999999999999999864          45788899999999999999 678999999999999999874210   


Q ss_pred             CCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCC---------CcEEEEEeCCCeEEEEeCCCCCCccccCC
Q 004468          186 AGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR---------PHLLLVGGSDAFARLYDRRMLPPLTSCQK  256 (751)
Q Consensus       186 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~---------~~~l~sgs~D~~IriwD~~~~~~~~~~~~  256 (751)
                                          ........|...|.+++|+|..         +.+|++++.|+.|++||... ..      
T Consensus       153 --------------------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~------  205 (343)
T 2xzm_R          153 --------------------FSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF-QI------  205 (343)
T ss_dssp             --------------------EECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTT-EE------
T ss_pred             --------------------eeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCC-ce------
Confidence                                0111223467789999999963         26899999999999999432 11      


Q ss_pred             CCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004468          257 RMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (751)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~  310 (751)
                             ...+       .+|.. .|++++|+|+|++|++++.|+.|+|||+..
T Consensus       206 -------~~~~-------~~h~~-~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~  244 (343)
T 2xzm_R          206 -------RYTF-------KAHES-NVNHLSISPNGKYIATGGKDKKLLIWDILN  244 (343)
T ss_dssp             -------EEEE-------ECCSS-CEEEEEECTTSSEEEEEETTCEEEEEESSC
T ss_pred             -------eEEE-------cCccc-cceEEEECCCCCEEEEEcCCCeEEEEECCC
Confidence                   1111       23443 599999999999999999999999999854

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=2e-36  Score=348.41  Aligned_cols=238  Identities=21%  Similarity=0.341  Sum_probs=192.3

Q ss_pred             ccccccchhhhccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCC
Q 004468           27 NHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETS  106 (751)
Q Consensus        27 ~~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~  106 (751)
                      +..+++|+.   ..+++..+.+|...|++++|+|+|++|++++.|+.|++||.. ++.+..+ .+|...|.+++|+|+  
T Consensus       242 d~~i~~w~~---~~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~-~~~~~~~-~~h~~~v~~~~~~~~--  314 (577)
T 2ymu_A          242 DKTVKLWNR---NGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRN-GQLLQTL-TGHSSSVWGVAFSPD--  314 (577)
T ss_dssp             TSCEEEECT---TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-SCEEEEE-CCCSSCEEEEEECTT--
T ss_pred             CCEEEEEeC---CCCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCC-CcEEEEE-ecCCCCeEEEEECCC--
Confidence            456777763   346778899999999999999999999999999999999964 6677777 899999999999999  


Q ss_pred             CcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCC
Q 004468          107 DELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPA  186 (751)
Q Consensus       107 ~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~  186 (751)
                      +.+|++++.|++|++||+..           ..+..+.+|...|.+++|+| ++.+|++++.||+|++||... +.    
T Consensus       315 ~~~l~t~~~d~~i~~w~~~~-----------~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~dg~v~~~~~~~-~~----  377 (577)
T 2ymu_A          315 GQTIASASDDKTVKLWNRNG-----------QHLQTLTGHSSSVWGVAFSP-DGQTIASASDDKTVKLWNRNG-QL----  377 (577)
T ss_dssp             SSEEEEEETTSCEEEEETTS-----------CEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTC-CE----
T ss_pred             CCEEEEEeCCCeEEEEeCCC-----------CeeEEEeCCCCCEEEEEECC-CCCEEEEEeCCCEEEEEcCCC-CE----
Confidence            89999999999999999874           34677889999999999999 678999999999999999532 21    


Q ss_pred             CCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCcccc
Q 004468          187 GSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNY  266 (751)
Q Consensus       187 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~  266 (751)
                                           +.....|...|++++|+| ++++|++++.|+.|++||.. .+.             +..
T Consensus       378 ---------------------~~~~~~~~~~v~~~~~s~-dg~~l~~~~~d~~v~~~~~~-~~~-------------~~~  421 (577)
T 2ymu_A          378 ---------------------LQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLWNRN-GQL-------------LQT  421 (577)
T ss_dssp             ---------------------EEEEECCSSCEEEEEECT-TSSCEEEEETTSEEEEECTT-CCE-------------EEE
T ss_pred             ---------------------EEEecCCCCCeEEEEECC-CCCEEEEEeCCCEEEEEeCC-CCE-------------EEE
Confidence                                 011123567899999999 57999999999999999953 221             111


Q ss_pred             ccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcceeeeecCCCceeEEeCCCC
Q 004468          267 FCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTL  333 (751)
Q Consensus       267 ~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp~~  333 (751)
                      +       .+|.. .|++++|+||+++|++++.|+.|++||+.. ........+...+..++|+|+.
T Consensus       422 ~-------~~~~~-~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~-~~~~~~~~~~~~v~~~~~spd~  479 (577)
T 2ymu_A          422 L-------TGHSS-SVWGVAFSPDDQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVRGVAFSPDG  479 (577)
T ss_dssp             E-------ECCSS-CEEEEEECTTSSEEEEEETTSEEEEEETTS-CEEEEEECCSSCEEEEEECTTS
T ss_pred             e-------cCCCC-CeEEEEECCCCCEEEEEcCCCEEEEEECCC-CEEEEEcCCCCCEEEEEEcCCC
Confidence            1       23433 599999999999999999999999999754 4444455566666777777754

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=8.5e-36  Score=318.21  Aligned_cols=223  Identities=21%  Similarity=0.306  Sum_probs=177.9

Q ss_pred             ccccchhhhccccccEEeccCCCcEEEEEECCC-CCEEEEEeCCCcEEEEeCCCCe-----EEEEecccCCcceEEEEEe
Q 004468           29 SLQMHSSLVRRLSQERELEGHQGCVNAISWNSK-GSLLISGSDDTHINVWSYSSRK-----LLHSIETGHSANVFCTKFV  102 (751)
Q Consensus        29 ~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~d-g~~LaSgs~Dg~I~IWd~~~~~-----~~~~l~~~h~~~V~~v~fs  102 (751)
                      .+.+.....+++.+..+|+||++.|++|+|+|+ +++|||||.|++|+|||+.+..     +...+ .+|...|.+++|+
T Consensus        17 ~~~~~~~~~~~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l-~~h~~~V~~~~~s   95 (340)
T 4aow_A           17 NLYFQSMMTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRAL-RGHSHFVSDVVIS   95 (340)
T ss_dssp             ---------CEEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEE-CCCSSCEEEEEEC
T ss_pred             cEEEEEccCCceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEE-eCCCCCEEEEEEC
Confidence            345556677888888999999999999999997 6899999999999999987543     45556 8999999999999


Q ss_pred             cCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCC
Q 004468          103 PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSS  182 (751)
Q Consensus       103 p~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~  182 (751)
                      |+  +++|++|+.|+.|++|+....          ........+...+..+.+++ .+.+|++++.|+.+++||+.....
T Consensus        96 ~d--g~~l~s~~~d~~i~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~-~~~~l~s~s~d~~~~~~d~~~~~~  162 (340)
T 4aow_A           96 SD--GQFALSGSWDGTLRLWDLTTG----------TTTRRFVGHTKDVLSVAFSS-DNRQIVSGSRDKTIKLWNTLGVCK  162 (340)
T ss_dssp             TT--SSEEEEEETTSEEEEEETTTT----------EEEEEEECCSSCEEEEEECT-TSSCEEEEETTSCEEEECTTSCEE
T ss_pred             CC--CCEEEEEcccccceEEeeccc----------ceeeeecCCCCceeEEEEee-cCccceeecCCCeEEEEEeCCCce
Confidence            99  899999999999999999864          34566677888899999998 667889999999999999876431


Q ss_pred             CCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCC-CcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCC
Q 004468          183 CPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR-PHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPP  261 (751)
Q Consensus       183 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~-~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~  261 (751)
                      .                        ......+...+..++|+++. ..++++++.|+.|++||+++.+.+..+       
T Consensus       163 ~------------------------~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~-------  211 (340)
T 4aow_A          163 Y------------------------TVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNH-------  211 (340)
T ss_dssp             E------------------------EECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEE-------
T ss_pred             E------------------------EEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEe-------
Confidence            1                        11223366788999998854 357889999999999999876533221       


Q ss_pred             CccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004468          262 PCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (751)
Q Consensus       262 ~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~  310 (751)
                                   .+|.. .|++++|+|+|++|++++.|+.|+|||+.+
T Consensus       212 -------------~~h~~-~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~  246 (340)
T 4aow_A          212 -------------IGHTG-YLNTVTVSPDGSLCASGGKDGQAMLWDLNE  246 (340)
T ss_dssp             -------------CCCSS-CEEEEEECTTSSEEEEEETTCEEEEEETTT
T ss_pred             -------------cCCCC-cEEEEEECCCCCEEEEEeCCCeEEEEEecc
Confidence                         23444 699999999999999999999999999877

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=2.3e-35  Score=339.52  Aligned_cols=238  Identities=21%  Similarity=0.323  Sum_probs=191.6

Q ss_pred             ccccccchhhhccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCC
Q 004468           27 NHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETS  106 (751)
Q Consensus        27 ~~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~  106 (751)
                      +..+++|+.   ..++.+.+.+|.+.|.+++|+|+|++|++|+.|+.|++||. +++.+..+ .+|...|.+++|+|+  
T Consensus       201 d~~v~~w~~---~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~-~~~~~~~~-~~~~~~v~~v~~~~d--  273 (577)
T 2ymu_A          201 DKTVKLWNR---NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTL-TGHSSSVNGVAFRPD--  273 (577)
T ss_dssp             TSEEEEECT---TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECT-TSCEEEEE-CCCSSCEEEEEECTT--
T ss_pred             CCEEEEEeC---CCcEEEEEecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEE-ecCCCCEEEEEEcCC--
Confidence            456666652   45677889999999999999999999999999999999996 46677777 899999999999999  


Q ss_pred             CcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCC
Q 004468          107 DELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPA  186 (751)
Q Consensus       107 ~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~  186 (751)
                      +++|++++.|+.|++||...           +.+..+.+|...|.+++|+| ++.+|++++.||+|++||+....     
T Consensus       274 ~~~l~~~~~d~~i~~w~~~~-----------~~~~~~~~h~~~v~~~~~~~-~~~~l~t~~~d~~i~~w~~~~~~-----  336 (577)
T 2ymu_A          274 GQTIASASDDKTVKLWNRNG-----------QLLQTLTGHSSSVWGVAFSP-DGQTIASASDDKTVKLWNRNGQH-----  336 (577)
T ss_dssp             SSEEEEEETTSCEEEEETTS-----------CEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTSCE-----
T ss_pred             CCEEEEEeCCCEEEEEeCCC-----------cEEEEEecCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeCCCCe-----
Confidence            89999999999999999763           45778899999999999999 67899999999999999976532     


Q ss_pred             CCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCcccc
Q 004468          187 GSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNY  266 (751)
Q Consensus       187 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~  266 (751)
                                           +.....+...|.+++|+| ++.+|++|+.|+.|++||.. .+.             +..
T Consensus       337 ---------------------~~~~~~~~~~v~~~~~s~-~g~~l~~~~~dg~v~~~~~~-~~~-------------~~~  380 (577)
T 2ymu_A          337 ---------------------LQTLTGHSSSVWGVAFSP-DGQTIASASDDKTVKLWNRN-GQL-------------LQT  380 (577)
T ss_dssp             ---------------------EEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETT-CCE-------------EEE
T ss_pred             ---------------------eEEEeCCCCCEEEEEECC-CCCEEEEEeCCCEEEEEcCC-CCE-------------EEE
Confidence                                 111123567899999999 47999999999999999954 221             111


Q ss_pred             ccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcceeeeecCCCceeEEeCCCC
Q 004468          267 FCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTL  333 (751)
Q Consensus       267 ~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp~~  333 (751)
                      +       .+|.. .|++++|+|+|++|++++.|+.|++||... ........+...+..++|+|+.
T Consensus       381 ~-------~~~~~-~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~-~~~~~~~~~~~~v~~~~~s~d~  438 (577)
T 2ymu_A          381 L-------TGHSS-SVRGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVWGVAFSPDD  438 (577)
T ss_dssp             E-------ECCSS-CEEEEEECTTSSCEEEEETTSEEEEECTTC-CEEEEEECCSSCEEEEEECTTS
T ss_pred             e-------cCCCC-CeEEEEECCCCCEEEEEeCCCEEEEEeCCC-CEEEEecCCCCCeEEEEECCCC
Confidence            1       22333 599999999999999999999999999654 4344444455556666666643

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=5.5e-35  Score=318.58  Aligned_cols=250  Identities=12%  Similarity=0.177  Sum_probs=191.5

Q ss_pred             CCCchHHHHHhhhccCcCcc--cccccc-cchhhhccccccEEeccCCCcEEEEEECCCC-CEEEEEeCCCcEEEEeCCC
Q 004468            6 FHDGSIYDMLDTRHTDTRPD--VNHSLQ-MHSSLVRRLSQERELEGHQGCVNAISWNSKG-SLLISGSDDTHINVWSYSS   81 (751)
Q Consensus         6 ~~~~~~~~~l~~r~~~~~~~--~~~~l~-~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg-~~LaSgs~Dg~I~IWd~~~   81 (751)
                      -...++..++..+.+.....  +...++ ........+++.+.+.+|.+.|++++|+|+| ++||+|+.|+.|+|||+.+
T Consensus        26 ~~~~si~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  105 (383)
T 3ei3_B           26 VGQTSILHYIYKSSLGQSIHAQLRQCLQEPFIRSLKSYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDV  105 (383)
T ss_dssp             -CCCSHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHTTCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTS
T ss_pred             cCCcceEEEeecchhccccccchhhhhhccccccccccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCC
Confidence            34566777777777765431  111111 1122345677888999999999999999999 9999999999999999998


Q ss_pred             CeEEEEec-ccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceee---cccCCceeEEEEec
Q 004468           82 RKLLHSIE-TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALY---QCHTRRVKKLAVEV  157 (751)
Q Consensus        82 ~~~~~~l~-~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~---~~h~~~V~~l~~sp  157 (751)
                      ++....+. .+|...|.+++|+|+. +.+|++++.|+.|++||+...           .+..+   ..|...|.+++|+|
T Consensus       106 ~~~~~~~~~~~h~~~v~~~~~~~~~-~~~l~s~~~d~~i~iwd~~~~-----------~~~~~~~~~~~~~~v~~~~~~~  173 (383)
T 3ei3_B          106 QNKTSFIQGMGPGDAITGMKFNQFN-TNQLFVSSIRGATTLRDFSGS-----------VIQVFAKTDSWDYWYCCVDVSV  173 (383)
T ss_dssp             TTCEEEECCCSTTCBEEEEEEETTE-EEEEEEEETTTEEEEEETTSC-----------EEEEEECCCCSSCCEEEEEEET
T ss_pred             cccceeeecCCcCCceeEEEeCCCC-CCEEEEEeCCCEEEEEECCCC-----------ceEEEeccCCCCCCeEEEEECC
Confidence            87776663 3799999999999942 689999999999999999842           23444   34558899999999


Q ss_pred             CCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCC
Q 004468          158 GNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD  237 (751)
Q Consensus       158 ~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D  237 (751)
                       ++.+|++++.||+|++||++...               +           .....|...|.+++|+|++..+|++|+.|
T Consensus       174 -~~~~l~~~~~d~~i~i~d~~~~~---------------~-----------~~~~~h~~~v~~~~~~~~~~~~l~s~~~d  226 (383)
T 3ei3_B          174 -SRQMLATGDSTGRLLLLGLDGHE---------------I-----------FKEKLHKAKVTHAEFNPRCDWLMATSSVD  226 (383)
T ss_dssp             -TTTEEEEEETTSEEEEEETTSCE---------------E-----------EEEECSSSCEEEEEECSSCTTEEEEEETT
T ss_pred             -CCCEEEEECCCCCEEEEECCCCE---------------E-----------EEeccCCCcEEEEEECCCCCCEEEEEeCC
Confidence             67899999999999999984221               1           11123667899999999654499999999


Q ss_pred             CeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcC-CCCEEEEEeCCCcEEEEECCCCC
Q 004468          238 AFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP-NGEEVLLSYSGEHVYLMDVNHAG  312 (751)
Q Consensus       238 ~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fsp-dg~~Ll~~s~d~~I~lwdl~~~~  312 (751)
                      +.|++||+++.+...         .++..+        +|.. .|++++|+| +|++|++++.|+.|+|||+.++.
T Consensus       227 ~~i~iwd~~~~~~~~---------~~~~~~--------~~~~-~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~  284 (383)
T 3ei3_B          227 ATVKLWDLRNIKDKN---------SYIAEM--------PHEK-PVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWS  284 (383)
T ss_dssp             SEEEEEEGGGCCSTT---------CEEEEE--------ECSS-CEEEEEECTTTSCEEEEEESSSEEEEEETTBTT
T ss_pred             CEEEEEeCCCCCccc---------ceEEEe--------cCCC-ceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCc
Confidence            999999998754211         111111        1323 599999999 99999999999999999998853

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=8.9e-35  Score=323.33  Aligned_cols=220  Identities=13%  Similarity=0.168  Sum_probs=174.0

Q ss_pred             cccccEEeccCCCcEEEEEECC-CCCEEEEEeCCCcEEEEeCCCCeEEEEe-cccCCcceEEEEEecCCCCcEEEEEECC
Q 004468           39 RLSQERELEGHQGCVNAISWNS-KGSLLISGSDDTHINVWSYSSRKLLHSI-ETGHSANVFCTKFVPETSDELVVSGAGD  116 (751)
Q Consensus        39 ~~~~~~~L~gH~~~V~~l~~s~-dg~~LaSgs~Dg~I~IWd~~~~~~~~~l-~~~h~~~V~~v~fsp~s~~~~l~sgs~D  116 (751)
                      ..+....+.+|...|+||+|+| ++++||+|+.||+|+|||+.++.....+ ..+|.+.|++|+|+|.. +.+|+||+.|
T Consensus       108 ~~~~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~-~~~l~s~s~D  186 (435)
T 4e54_B          108 SYRILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLN-TNQFYASSME  186 (435)
T ss_dssp             TTTSCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSC-TTEEEEECSS
T ss_pred             ceeecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCC-CCEEEEEeCC
Confidence            4455677889999999999999 5779999999999999999876543322 26899999999999953 7899999999


Q ss_pred             CcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceE
Q 004468          117 AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNI  196 (751)
Q Consensus       117 g~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~  196 (751)
                      ++|+|||+.....        ........+...+.+++|+| ++.+|++|+.||+|++||++...               
T Consensus       187 ~~v~iwd~~~~~~--------~~~~~~~~~~~~~~~~~~~~-~~~~l~~g~~dg~i~~wd~~~~~---------------  242 (435)
T 4e54_B          187 GTTRLQDFKGNIL--------RVFASSDTINIWFCSLDVSA-SSRMVVTGDNVGNVILLNMDGKE---------------  242 (435)
T ss_dssp             SCEEEEETTSCEE--------EEEECCSSCSCCCCCEEEET-TTTEEEEECSSSBEEEEESSSCB---------------
T ss_pred             CEEEEeeccCCce--------eEEeccCCCCccEEEEEECC-CCCEEEEEeCCCcEeeeccCcce---------------
Confidence            9999999975310        11222233455688999999 67899999999999999987542               


Q ss_pred             EEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCC
Q 004468          197 LLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHG  276 (751)
Q Consensus       197 l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  276 (751)
                                 +.....|...|++++|+|++..+|++|+.|+.|+|||+++.+....+.                 ...+
T Consensus       243 -----------~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~-----------------~~~~  294 (435)
T 4e54_B          243 -----------LWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFL-----------------YSLP  294 (435)
T ss_dssp             -----------CCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCS-----------------BCCB
T ss_pred             -----------eEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEE-----------------Eeee
Confidence                       122234678899999999877799999999999999998765432210                 1123


Q ss_pred             ccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCC
Q 004468          277 RSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG  312 (751)
Q Consensus       277 ~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~  312 (751)
                      |.. .|++++|+|+|++|++++.|+.|+|||+.++.
T Consensus       295 h~~-~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~  329 (435)
T 4e54_B          295 HRH-PVNAACFSPDGARLLTTDQKSEIRVYSASQWD  329 (435)
T ss_dssp             CSS-CEEECCBCTTSSEEEEEESSSCEEEEESSSSS
T ss_pred             ccc-cccceeECCCCCeeEEEcCCCEEEEEECCCCc
Confidence            444 69999999999999999999999999998853

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=3.7e-34  Score=337.73  Aligned_cols=215  Identities=19%  Similarity=0.255  Sum_probs=177.6

Q ss_pred             ccccEEeccCCCcEEEEEECCCC-CEEEEEeCCCcEEEEeCCCC-----eEEEEecccCCcceEEEEEecCCCCcEEEEE
Q 004468           40 LSQERELEGHQGCVNAISWNSKG-SLLISGSDDTHINVWSYSSR-----KLLHSIETGHSANVFCTKFVPETSDELVVSG  113 (751)
Q Consensus        40 ~~~~~~L~gH~~~V~~l~~s~dg-~~LaSgs~Dg~I~IWd~~~~-----~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sg  113 (751)
                      +++...|++|++.|++|+|+|++ ++|+|||.|++|+||++.+.     .....+ .+|...|.+++|+|+  +++|+||
T Consensus       372 l~~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~-~~h~~~v~~v~~s~~--g~~l~sg  448 (694)
T 3dm0_A          372 LVLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRL-TGHSHFVEDVVLSSD--GQFALSG  448 (694)
T ss_dssp             SEEEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEE-ECCSSCEEEEEECTT--SSEEEEE
T ss_pred             cchhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCccccccccee-cCCCCcEEEEEECCC--CCEEEEE
Confidence            45567899999999999999864 79999999999999998753     344556 799999999999999  8999999


Q ss_pred             ECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCcc
Q 004468          114 AGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQEC  193 (751)
Q Consensus       114 s~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~  193 (751)
                      +.|++|+|||+.++          ..+..+.+|...|.+++|+| ++.+|+||+.|++|++||+.....           
T Consensus       449 s~Dg~v~vwd~~~~----------~~~~~~~~h~~~v~~~~~s~-~~~~l~s~s~D~~i~iwd~~~~~~-----------  506 (694)
T 3dm0_A          449 SWDGELRLWDLAAG----------VSTRRFVGHTKDVLSVAFSL-DNRQIVSASRDRTIKLWNTLGECK-----------  506 (694)
T ss_dssp             ETTSEEEEEETTTT----------EEEEEEECCSSCEEEEEECT-TSSCEEEEETTSCEEEECTTSCEE-----------
T ss_pred             eCCCcEEEEECCCC----------cceeEEeCCCCCEEEEEEeC-CCCEEEEEeCCCEEEEEECCCCcc-----------
Confidence            99999999999864          45778899999999999999 668899999999999999764321           


Q ss_pred             ceEEEecccCceecccCCCCCccceEEEEEeCCC-CcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCcccccccccc
Q 004468          194 RNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR-PHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHL  272 (751)
Q Consensus       194 ~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~-~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (751)
                       ..+          ......|...|.+++|+|+. ..+|++|+.|+.|++||+++.+....+                  
T Consensus       507 -~~~----------~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~------------------  557 (694)
T 3dm0_A          507 -YTI----------SEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTL------------------  557 (694)
T ss_dssp             -EEE----------CSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEE------------------
T ss_pred             -eee----------ccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEE------------------
Confidence             000          11123477789999999963 258999999999999999875432221                  


Q ss_pred             ccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 004468          273 SEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (751)
Q Consensus       273 ~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~  311 (751)
                        .+|.. .|++++|+|+|++|++++.|+.|+|||+.++
T Consensus       558 --~~h~~-~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~  593 (694)
T 3dm0_A          558 --AGHTG-YVSTVAVSPDGSLCASGGKDGVVLLWDLAEG  593 (694)
T ss_dssp             --CCCSS-CEEEEEECTTSSEEEEEETTSBCEEEETTTT
T ss_pred             --cCCCC-CEEEEEEeCCCCEEEEEeCCCeEEEEECCCC
Confidence              34544 5999999999999999999999999998873

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=3.6e-34  Score=315.94  Aligned_cols=222  Identities=20%  Similarity=0.325  Sum_probs=190.5

Q ss_pred             ccccccchhhhccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCC
Q 004468           27 NHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETS  106 (751)
Q Consensus        27 ~~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~  106 (751)
                      +..+++|+.  .+.++.++|++|.+.|++++|+|+|++||+|+.|++|+|||+.+++++..+ .+|...|.+++|+|+  
T Consensus       129 Dg~i~vwd~--~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~-~~h~~~V~~v~~~p~--  203 (410)
T 1vyh_C          129 DATIKVWDY--ETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTM-HGHDHNVSSVSIMPN--  203 (410)
T ss_dssp             SSCEEEEET--TTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECC-CCCSSCEEEEEECSS--
T ss_pred             CCeEEEEEC--CCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEE-cCCCCCEEEEEEeCC--
Confidence            567777763  455678899999999999999999999999999999999999999999888 899999999999999  


Q ss_pred             CcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCC
Q 004468          107 DELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPA  186 (751)
Q Consensus       107 ~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~  186 (751)
                      +.+|++|+.|++|++||+.++          .++..+.+|...|.+++|+| ++.+|++|+.||+|++||++++...   
T Consensus       204 ~~~l~s~s~D~~i~~wd~~~~----------~~~~~~~~h~~~v~~~~~~~-~g~~l~s~s~D~~v~vwd~~~~~~~---  269 (410)
T 1vyh_C          204 GDHIVSASRDKTIKMWEVQTG----------YCVKTFTGHREWVRMVRPNQ-DGTLIASCSNDQTVRVWVVATKECK---  269 (410)
T ss_dssp             SSEEEEEETTSEEEEEETTTC----------CEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEE---
T ss_pred             CCEEEEEeCCCeEEEEECCCC----------cEEEEEeCCCccEEEEEECC-CCCEEEEEcCCCeEEEEECCCCcee---
Confidence            799999999999999999864          55788999999999999999 6789999999999999999876521   


Q ss_pred             CCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCC-------------------CcEEEEEeCCCeEEEEeCCC
Q 004468          187 GSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR-------------------PHLLLVGGSDAFARLYDRRM  247 (751)
Q Consensus       187 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~-------------------~~~l~sgs~D~~IriwD~~~  247 (751)
                                            .....|...|.+++|+|+.                   +.+|++|+.|+.|++||+++
T Consensus       270 ----------------------~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~  327 (410)
T 1vyh_C          270 ----------------------AELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVST  327 (410)
T ss_dssp             ----------------------EEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTT
T ss_pred             ----------------------eEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCC
Confidence                                  1112366789999999852                   56899999999999999987


Q ss_pred             CCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004468          248 LPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (751)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~  310 (751)
                      +..+..             +       .+|.. .|++++|+|+|++|++++.|+.|++||+.+
T Consensus       328 ~~~~~~-------------~-------~~h~~-~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~  369 (410)
T 1vyh_C          328 GMCLMT-------------L-------VGHDN-WVRGVLFHSGGKFILSCADDKTLRVWDYKN  369 (410)
T ss_dssp             TEEEEE-------------E-------ECCSS-CEEEEEECSSSSCEEEEETTTEEEEECCTT
T ss_pred             CceEEE-------------E-------ECCCC-cEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Confidence            653322             2       23444 699999999999999999999999999765

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=5.9e-34  Score=303.48  Aligned_cols=225  Identities=20%  Similarity=0.320  Sum_probs=194.6

Q ss_pred             ccccccccchhhhccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecC
Q 004468           25 DVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPE  104 (751)
Q Consensus        25 ~~~~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~  104 (751)
                      ..+..+++|+....+..+...|.||...|.+++|++++.+|+||+.|++|+|||+.+++.+..+ ..|...+.+++|+|+
T Consensus        55 s~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~-~~~~~~~~~~~~spd  133 (321)
T 3ow8_A           55 SLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSI-DAGPVDAWTLAFSPD  133 (321)
T ss_dssp             ETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEE-ECCTTCCCCEEECTT
T ss_pred             cCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEE-eCCCccEEEEEECCC
Confidence            3577888888766666777889999999999999999999999999999999999999999888 788999999999999


Q ss_pred             CCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCC
Q 004468          105 TSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCP  184 (751)
Q Consensus       105 s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~  184 (751)
                        +++|++|+.|+.|++||+...          +....+..|...|.+++|+| ++.+|++|+.||+|++||+++++.. 
T Consensus       134 --g~~l~~g~~dg~v~i~~~~~~----------~~~~~~~~~~~~v~~~~~sp-dg~~lasg~~dg~i~iwd~~~~~~~-  199 (321)
T 3ow8_A          134 --SQYLATGTHVGKVNIFGVESG----------KKEYSLDTRGKFILSIAYSP-DGKYLASGAIDGIINIFDIATGKLL-  199 (321)
T ss_dssp             --SSEEEEECTTSEEEEEETTTC----------SEEEEEECSSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEE-
T ss_pred             --CCEEEEEcCCCcEEEEEcCCC----------ceeEEecCCCceEEEEEECC-CCCEEEEEcCCCeEEEEECCCCcEE-
Confidence              899999999999999999864          44677888999999999999 6789999999999999999876521 


Q ss_pred             CCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCcc
Q 004468          185 PAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCV  264 (751)
Q Consensus       185 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~  264 (751)
                                              .....|...|++++|+| ++.+|++|+.|+.|++||++..+....+          
T Consensus       200 ------------------------~~~~~h~~~v~~l~~sp-d~~~l~s~s~dg~i~iwd~~~~~~~~~~----------  244 (321)
T 3ow8_A          200 ------------------------HTLEGHAMPIRSLTFSP-DSQLLVTASDDGYIKIYDVQHANLAGTL----------  244 (321)
T ss_dssp             ------------------------EEECCCSSCCCEEEECT-TSCEEEEECTTSCEEEEETTTCCEEEEE----------
T ss_pred             ------------------------EEEcccCCceeEEEEcC-CCCEEEEEcCCCeEEEEECCCcceeEEE----------
Confidence                                    11223667899999999 4789999999999999999876533221          


Q ss_pred             ccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004468          265 NYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (751)
Q Consensus       265 ~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~  310 (751)
                                .+|.. .|++++|+|+|++|++++.|+.|+|||+.+
T Consensus       245 ----------~~h~~-~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~  279 (321)
T 3ow8_A          245 ----------SGHAS-WVLNVAFCPDDTHFVSSSSDKSVKVWDVGT  279 (321)
T ss_dssp             ----------CCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred             ----------cCCCC-ceEEEEECCCCCEEEEEeCCCcEEEEeCCC
Confidence                      33444 599999999999999999999999999876

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6e-35  Score=321.09  Aligned_cols=241  Identities=15%  Similarity=0.252  Sum_probs=180.4

Q ss_pred             CCcEEEEEECCCCC-EEEEE----------eCCCcEEEEeCCCCe---EEEEecccCCcceEEEEEecCCCCcEEEEEEC
Q 004468           50 QGCVNAISWNSKGS-LLISG----------SDDTHINVWSYSSRK---LLHSIETGHSANVFCTKFVPETSDELVVSGAG  115 (751)
Q Consensus        50 ~~~V~~l~~s~dg~-~LaSg----------s~Dg~I~IWd~~~~~---~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~  115 (751)
                      ...|.+++|+|+|+ +||+|          +.|+.|+|||+.++.   .+..  ..|...|.+++|+|+  +.+|++|+.
T Consensus        12 ~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~--~~~~~~v~~~~~s~~--~~~l~~~~~   87 (416)
T 2pm9_A           12 FSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIAS--LQVDSKFNDLDWSHN--NKIIAGALD   87 (416)
T ss_dssp             EEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCC--CCCSSCEEEEEECSS--SSCEEEEES
T ss_pred             hhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEE--EecCCceEEEEECCC--CCeEEEEcc
Confidence            35788999999997 99999          899999999998775   3333  368999999999999  799999999


Q ss_pred             CCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccce
Q 004468          116 DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRN  195 (751)
Q Consensus       116 Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~  195 (751)
                      |+.|++||+......      ...+..+.+|...|.+++|+|+++.+|++++.||+|++||+++........        
T Consensus        88 dg~v~vw~~~~~~~~------~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~--------  153 (416)
T 2pm9_A           88 NGSLELYSTNEANNA------INSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNY--------  153 (416)
T ss_dssp             SSCEEEECCSSTTSC------CCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTC--------
T ss_pred             CCeEEEeeccccccc------ccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccc--------
Confidence            999999999862111      135778889999999999999658899999999999999999875210000        


Q ss_pred             EEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccC
Q 004468          196 ILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEH  275 (751)
Q Consensus       196 ~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (751)
                              ....+.....|...|.+++|+|+++.+|++++.|+.|++||+++.+.+..+..              +....
T Consensus       154 --------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~--------------~~~~~  211 (416)
T 2pm9_A          154 --------TPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSY--------------TSPNS  211 (416)
T ss_dssp             --------CCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECC--------------CCCSS
T ss_pred             --------cccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEec--------------ccccc
Confidence                    00001122346778999999997679999999999999999988654332211              00001


Q ss_pred             CccccceEEEEEcCCC-CEEEEEeCCC---cEEEEECCCCCcceeee--ecCCCceeEEeCC
Q 004468          276 GRSSLHLTHVTFSPNG-EEVLLSYSGE---HVYLMDVNHAGGRAMRY--TVGDASKIMSFTP  331 (751)
Q Consensus       276 g~~~~~vt~v~fspdg-~~Ll~~s~d~---~I~lwdl~~~~~~~~~~--~~~~~~~~~~~sp  331 (751)
                      +|. ..|++++|+|++ .+|++++.|+   .|++||+.++......+  .+...+..++|+|
T Consensus       212 ~~~-~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~  272 (416)
T 2pm9_A          212 GIK-QQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCH  272 (416)
T ss_dssp             CCC-CCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECS
T ss_pred             ccC-CceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCC
Confidence            122 269999999998 5888999998   99999999864332222  3445555566655

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.1e-33  Score=300.17  Aligned_cols=225  Identities=17%  Similarity=0.270  Sum_probs=179.8

Q ss_pred             ccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCC
Q 004468           38 RRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA  117 (751)
Q Consensus        38 ~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg  117 (751)
                      ........|.+|.+.|++++|+|+|++||+|+.||.|+|||+.+++.+..+ .+|...|.+++|+|+  +++|++++.|+
T Consensus        20 G~~~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-~~h~~~v~~~~~~~~--~~~l~s~~~dg   96 (369)
T 3zwl_B           20 GSHMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTL-DGHTGTIWSIDVDCF--TKYCVTGSADY   96 (369)
T ss_dssp             CCSEEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEE-CCCSSCEEEEEECTT--SSEEEEEETTT
T ss_pred             ccccccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhh-hhcCCcEEEEEEcCC--CCEEEEEeCCC
Confidence            344455779999999999999999999999999999999999999999988 899999999999998  79999999999


Q ss_pred             cEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCC-----CcEEEEecCCCCCCCCCCCCCCc
Q 004468          118 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED-----GTLRQHDFRQGSSCPPAGSSHQE  192 (751)
Q Consensus       118 ~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~D-----g~I~iwDlr~~~~~~~~~~~~~~  192 (751)
                      .|++||+..+          +.+..+. |...|.+++|+| ++.+|++++.+     |.|++||++..........    
T Consensus        97 ~i~iwd~~~~----------~~~~~~~-~~~~v~~~~~~~-~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~----  160 (369)
T 3zwl_B           97 SIKLWDVSNG----------QCVATWK-SPVPVKRVEFSP-CGNYFLAILDNVMKNPGSINIYEIERDSATHELTK----  160 (369)
T ss_dssp             EEEEEETTTC----------CEEEEEE-CSSCEEEEEECT-TSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEE----
T ss_pred             eEEEEECCCC----------cEEEEee-cCCCeEEEEEcc-CCCEEEEecCCccCCCCEEEEEEecCCccceeecc----
Confidence            9999999864          4455665 899999999999 67899999998     9999999988764321110    


Q ss_pred             cceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCC-CCCccccCCCCCCCCccccccccc
Q 004468          193 CRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM-LPPLTSCQKRMSPPPCVNYFCPMH  271 (751)
Q Consensus       193 ~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~-~~~~~~~~~~~~~~~~~~~~~~~~  271 (751)
                             ........+. .......+.+++|+| ++.+|++++.|+.|++||+++ ...+..             +    
T Consensus       161 -------~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~-------------~----  214 (369)
T 3zwl_B          161 -------VSEEPIHKII-THEGLDAATVAGWST-KGKYIIAGHKDGKISKYDVSNNYEYVDS-------------I----  214 (369)
T ss_dssp             -------ECSSCSEEEE-CCTTCCCEEEEEECG-GGCEEEEEETTSEEEEEETTTTTEEEEE-------------E----
T ss_pred             -------cccceeeecc-CCcCccceeEEEEcC-CCCEEEEEcCCCEEEEEECCCCcEeEEE-------------E----
Confidence                   0000000010 111223899999999 578999999999999999987 322211             1    


Q ss_pred             cccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 004468          272 LSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (751)
Q Consensus       272 ~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~  311 (751)
                         .+|.. .|++++|+|++++|++++.|+.|++||+.++
T Consensus       215 ---~~~~~-~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~  250 (369)
T 3zwl_B          215 ---DLHEK-SISDMQFSPDLTYFITSSRDTNSFLVDVSTL  250 (369)
T ss_dssp             ---ECCSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred             ---ecCCC-ceeEEEECCCCCEEEEecCCceEEEEECCCC
Confidence               12323 5999999999999999999999999998873

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=3.8e-34  Score=359.49  Aligned_cols=209  Identities=21%  Similarity=0.331  Sum_probs=167.1

Q ss_pred             ccccccchhhhccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCC
Q 004468           27 NHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETS  106 (751)
Q Consensus        27 ~~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~  106 (751)
                      +..+++|+.  .+.+.+.++.+|.+.|++++|+|+|++||+|+.|++|+|||+.+++.+..+ .+|...|.+++|+|+.+
T Consensus       636 d~~i~vw~~--~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~  712 (1249)
T 3sfz_A          636 DKTLQVFKA--ETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTY-DEHSEQVNCCHFTNKSN  712 (1249)
T ss_dssp             TSCEEEEET--TTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-ECCSSCEEEEEECSSSS
T ss_pred             CCeEEEEEC--CCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEE-cCCCCcEEEEEEecCCC
Confidence            456666653  455678899999999999999999999999999999999999999999998 79999999999999754


Q ss_pred             CcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCC
Q 004468          107 DELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPA  186 (751)
Q Consensus       107 ~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~  186 (751)
                      +.++++|+.|+.|++||+.++          .++..+.+|...|++++|+| ++.+|++++.||+|++||++++......
T Consensus       713 ~~~l~sg~~d~~v~vwd~~~~----------~~~~~~~~h~~~v~~~~~sp-~~~~l~s~s~dg~v~vwd~~~~~~~~~~  781 (1249)
T 3sfz_A          713 HLLLATGSNDFFLKLWDLNQK----------ECRNTMFGHTNSVNHCRFSP-DDELLASCSADGTLRLWDVRSANERKSI  781 (1249)
T ss_dssp             CCEEEEEETTSCEEEEETTSS----------SEEEEECCCSSCEEEEEECS-STTEEEEEESSSEEEEEEGGGTEEEEEE
T ss_pred             ceEEEEEeCCCeEEEEECCCc----------chhheecCCCCCEEEEEEec-CCCEEEEEECCCeEEEEeCCCCccccee
Confidence            779999999999999999864          55788899999999999999 6789999999999999999876421000


Q ss_pred             ------------------------CCCC-------CccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEe
Q 004468          187 ------------------------GSSH-------QECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGG  235 (751)
Q Consensus       187 ------------------------~~~~-------~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs  235 (751)
                                              ....       ......+|+...+..... ....+...|.+++|+| ++.++++++
T Consensus       782 ~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~-~~~~~~~~v~~~~~sp-~~~~l~~~~  859 (1249)
T 3sfz_A          782 NVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAE-IHTGHHSTIQYCDFSP-YDHLAVIAL  859 (1249)
T ss_dssp             ECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEE-EECSSSSCCCEEEECS-STTEEEEEC
T ss_pred             cccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeE-EcCCCCCceEEEEEcC-CCCEEEEEe
Confidence                                    0000       011233455544433211 1235678899999999 479999999


Q ss_pred             CCCeEEEEeCCCCCCc
Q 004468          236 SDAFARLYDRRMLPPL  251 (751)
Q Consensus       236 ~D~~IriwD~~~~~~~  251 (751)
                      .|+.|++||+.+...+
T Consensus       860 ~dg~v~vwd~~~~~~~  875 (1249)
T 3sfz_A          860 SQYCVELWNIDSRLKV  875 (1249)
T ss_dssp             SSSCEEEEETTTTEEE
T ss_pred             CCCeEEEEEcCCCcee
Confidence            9999999999876543

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=1.9e-33  Score=302.51  Aligned_cols=208  Identities=17%  Similarity=0.214  Sum_probs=171.1

Q ss_pred             eccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEe---cccCCcceEEEEEecCCCCcEEEEEECCCcEEEE
Q 004468           46 LEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSI---ETGHSANVFCTKFVPETSDELVVSGAGDAEVRLF  122 (751)
Q Consensus        46 L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l---~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vw  122 (751)
                      ...|...|++++|+|++ .|++|+.||+|+|||+.+++.+..+   ..+|.+.|++|+|+|+  +++|++|+.|++|+||
T Consensus        78 ~~~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spd--g~~l~sgs~d~~i~iw  154 (344)
T 4gqb_B           78 GVQTEAGVADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSS--GTQAVSGSKDICIKVW  154 (344)
T ss_dssp             EEEESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTT--SSEEEEEETTSCEEEE
T ss_pred             eeccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCC--CCEEEEEeCCCeEEEE
Confidence            34467889999999985 6889999999999999988654332   2589999999999999  8999999999999999


Q ss_pred             ECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEeccc
Q 004468          123 NLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRC  202 (751)
Q Consensus       123 d~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~  202 (751)
                      |+.++          +++..+.+|...|++++|+|++..+|++|+.||+|++||+++++....                 
T Consensus       155 d~~~~----------~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~-----------------  207 (344)
T 4gqb_B          155 DLAQQ----------VVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQ-----------------  207 (344)
T ss_dssp             ETTTT----------EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEE-----------------
T ss_pred             ECCCC----------cEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeee-----------------
Confidence            99864          568899999999999999997778999999999999999998763210                 


Q ss_pred             CceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccce
Q 004468          203 GAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHL  282 (751)
Q Consensus       203 ~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v  282 (751)
                            .....+...+.+++|+|.++++|++|+.|+.|+|||+++.+.+..+                    .+|.. .|
T Consensus       208 ------~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~--------------------~~h~~-~v  260 (344)
T 4gqb_B          208 ------IGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSS--------------------AVHSQ-CV  260 (344)
T ss_dssp             ------CC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEE--------------------ECCSS-CE
T ss_pred             ------eecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEE--------------------cCCCC-CE
Confidence                  0111244568999999988899999999999999999987654332                    34444 59


Q ss_pred             EEEEEcCCC-CEEEEEeCCCcEEEEECCC
Q 004468          283 THVTFSPNG-EEVLLSYSGEHVYLMDVNH  310 (751)
Q Consensus       283 t~v~fspdg-~~Ll~~s~d~~I~lwdl~~  310 (751)
                      ++++|+|+| ++|++++.|++|+|||+.+
T Consensus       261 ~~v~fsp~g~~~lasgs~D~~i~vwd~~~  289 (344)
T 4gqb_B          261 TGLVFSPHSVPFLASLSEDCSLAVLDSSL  289 (344)
T ss_dssp             EEEEECSSSSCCEEEEETTSCEEEECTTC
T ss_pred             EEEEEccCCCeEEEEEeCCCeEEEEECCC
Confidence            999999998 5788999999999999766

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=1.8e-33  Score=353.22  Aligned_cols=260  Identities=18%  Similarity=0.208  Sum_probs=207.4

Q ss_pred             ccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEE
Q 004468           42 QERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRL  121 (751)
Q Consensus        42 ~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~v  121 (751)
                      ....+.+|.+.|++++|+|+|++||+|+.||+|+|||+.+++.+..+ .+|.+.|.+++|+|+  +++|++|+.|++|+|
T Consensus       607 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~-~~h~~~v~~~~~s~~--~~~l~s~~~d~~v~v  683 (1249)
T 3sfz_A          607 SRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDI-KAHEDEVLCCAFSSD--DSYIATCSADKKVKI  683 (1249)
T ss_dssp             CSEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEE-CCCSSCEEEEEECTT--SSEEEEEETTSEEEE
T ss_pred             ceEEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEe-ccCCCCEEEEEEecC--CCEEEEEeCCCeEEE
Confidence            44578899999999999999999999999999999999999999999 799999999999999  899999999999999


Q ss_pred             EECCCCCCCCCCCCCCCCceeecccCCceeEEEEecC-CCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEec
Q 004468          122 FNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVG-NPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDL  200 (751)
Q Consensus       122 wd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~-~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~  200 (751)
                      ||+.++          +++..+.+|...|.+++|+|+ +..++++|+.||+|++||+++++..                 
T Consensus       684 wd~~~~----------~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~-----------------  736 (1249)
T 3sfz_A          684 WDSATG----------KLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECR-----------------  736 (1249)
T ss_dssp             EETTTC----------CEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEE-----------------
T ss_pred             EECCCC----------ceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchh-----------------
Confidence            999865          568889999999999999985 3458999999999999999886521                 


Q ss_pred             ccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCC-------------CCCccccc
Q 004468          201 RCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMS-------------PPPCVNYF  267 (751)
Q Consensus       201 ~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~-------------~~~~~~~~  267 (751)
                              ....+|...|++++|+| ++.++++++.|+.|++||+++......+.....             ...++. +
T Consensus       737 --------~~~~~h~~~v~~~~~sp-~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~  806 (1249)
T 3sfz_A          737 --------NTMFGHTNSVNHCRFSP-DDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCS-W  806 (1249)
T ss_dssp             --------EEECCCSSCEEEEEECS-STTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCC-B
T ss_pred             --------heecCCCCCEEEEEEec-CCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEE-E
Confidence                    11224678899999999 578999999999999999987653322211000             000000 0


Q ss_pred             ccc-----------------------ccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcceeeeecCCCc
Q 004468          268 CPM-----------------------HLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDAS  324 (751)
Q Consensus       268 ~~~-----------------------~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~~~~~~~~~  324 (751)
                      .+.                       .....+|.. .|++++|+|+++++++++.|+.|++||+.++........+...+
T Consensus       807 s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~-~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v  885 (1249)
T 3sfz_A          807 SADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHS-TIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWV  885 (1249)
T ss_dssp             CTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSS-CCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCE
T ss_pred             CCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCC-ceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccce
Confidence            000                       000013333 69999999999999999999999999999976666666777888


Q ss_pred             eeEEeCCCCCCcccCCCc
Q 004468          325 KIMSFTPTLNGLELQPPI  342 (751)
Q Consensus       325 ~~~~~sp~~~~~~~~~~~  342 (751)
                      ..++|+|+...+.....+
T Consensus       886 ~~v~~spdg~~l~s~s~d  903 (1249)
T 3sfz_A          886 HGVMFSPDGSSFLTASDD  903 (1249)
T ss_dssp             EEEEECTTSSEEEEEETT
T ss_pred             EEEEECCCCCEEEEEeCC
Confidence            999999987766554433

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.8e-33  Score=309.27  Aligned_cols=237  Identities=11%  Similarity=0.161  Sum_probs=172.9

Q ss_pred             ccCCCcEEEEEECCCCC-EEEEEeCCCcEEEEeC----CCCe------EEEEecc---------cCCcceEEEEEecCCC
Q 004468           47 EGHQGCVNAISWNSKGS-LLISGSDDTHINVWSY----SSRK------LLHSIET---------GHSANVFCTKFVPETS  106 (751)
Q Consensus        47 ~gH~~~V~~l~~s~dg~-~LaSgs~Dg~I~IWd~----~~~~------~~~~l~~---------~h~~~V~~v~fsp~s~  106 (751)
                      ..|.+.|++++|+|+|+ +||+|+.|+.|+||++    .+++      ....+..         +|.+.|.+++|+|+  
T Consensus        42 ~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--  119 (425)
T 1r5m_A           42 IVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHD--  119 (425)
T ss_dssp             EEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTT--
T ss_pred             eeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCC--
Confidence            44669999999999999 9999999999999999    8877      3444411         26889999999998  


Q ss_pred             CcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCC
Q 004468          107 DELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPA  186 (751)
Q Consensus       107 ~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~  186 (751)
                      +++|++|+.|+.|++||...           ..+..+..|...|.+++|+| ++.+|++++.||.|++||+++++.... 
T Consensus       120 ~~~l~~~~~dg~i~i~~~~~-----------~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~-  186 (425)
T 1r5m_A          120 GNSIVTGVENGELRLWNKTG-----------ALLNVLNFHRAPIVSVKWNK-DGTHIISMDVENVTILWNVISGTVMQH-  186 (425)
T ss_dssp             SSEEEEEETTSCEEEEETTS-----------CEEEEECCCCSCEEEEEECT-TSSEEEEEETTCCEEEEETTTTEEEEE-
T ss_pred             CCEEEEEeCCCeEEEEeCCC-----------CeeeeccCCCccEEEEEECC-CCCEEEEEecCCeEEEEECCCCcEEEE-
Confidence            89999999999999999432           45788889999999999999 678999999999999999987653210 


Q ss_pred             CCCCCccceEEEecccCce--ecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCcc
Q 004468          187 GSSHQECRNILLDLRCGAK--RSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCV  264 (751)
Q Consensus       187 ~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~  264 (751)
                                 +.......  ............+.+++|+|+  ..+++++.|+.|++||+++.+.+..+          
T Consensus       187 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~i~~~d~~~~~~~~~~----------  243 (425)
T 1r5m_A          187 -----------FELKETGGSSINAENHSGDGSLGVDVEWVDD--DKFVIPGPKGAIFVYQITEKTPTGKL----------  243 (425)
T ss_dssp             -----------ECCC---------------CCCBSCCEEEET--TEEEEECGGGCEEEEETTCSSCSEEE----------
T ss_pred             -----------eeccccCccceeeccccCCcceeeEEEEcCC--CEEEEEcCCCeEEEEEcCCCceeeee----------
Confidence                       00000000  000000111223888999984  57999999999999999876543222          


Q ss_pred             ccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcceeeeecCCCceeEEeCCC
Q 004468          265 NYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPT  332 (751)
Q Consensus       265 ~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp~  332 (751)
                                .+|.. .|++++|+|++++|++++.|+.|++||+.++........+...+..++|+|+
T Consensus       244 ----------~~~~~-~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~  300 (425)
T 1r5m_A          244 ----------IGHHG-PISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGD  300 (425)
T ss_dssp             ----------CCCSS-CEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETT
T ss_pred             ----------ccCCC-ceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCC
Confidence                      12333 5999999999999999999999999999986544444444555555555553

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=2.6e-33  Score=301.71  Aligned_cols=231  Identities=12%  Similarity=0.175  Sum_probs=171.7

Q ss_pred             EeccCCCcEEEEEECCC----CCEEEEEeCCCcEEEEeCCCCeEEEEec----ccCCcceEEEEEecCCC--CcEEEEEE
Q 004468           45 ELEGHQGCVNAISWNSK----GSLLISGSDDTHINVWSYSSRKLLHSIE----TGHSANVFCTKFVPETS--DELVVSGA  114 (751)
Q Consensus        45 ~L~gH~~~V~~l~~s~d----g~~LaSgs~Dg~I~IWd~~~~~~~~~l~----~~h~~~V~~v~fsp~s~--~~~l~sgs  114 (751)
                      .+.+|.+.|++++|+|+    ..++++++.++.|+|||+.+++.+..+.    ..|...|.+++|+|+..  +.+|++|+
T Consensus        13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~   92 (366)
T 3k26_A           13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAG   92 (366)
T ss_dssp             EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEE
T ss_pred             eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEec
Confidence            44599999999999984    4456666667799999999877665552    13668899999999843  46999999


Q ss_pred             CCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccc
Q 004468          115 GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECR  194 (751)
Q Consensus       115 ~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~  194 (751)
                      .|+.|++||+.+.          +++..+.+|...|.+++|+|+++.+|++++.||+|++||+++++..           
T Consensus        93 ~dg~i~v~d~~~~----------~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-----------  151 (366)
T 3k26_A           93 SRGIIRIINPITM----------QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLV-----------  151 (366)
T ss_dssp             TTCEEEEECTTTC----------CEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEE-----------
T ss_pred             CCCEEEEEEchhc----------eEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEE-----------
Confidence            9999999999864          5578888999999999999977789999999999999999876521           


Q ss_pred             eEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCC--------CCCCCcccc
Q 004468          195 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKR--------MSPPPCVNY  266 (751)
Q Consensus       195 ~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~--------~~~~~~~~~  266 (751)
                         .        .+.....+...|.+++|+| ++.+|++++.|+.|++||+++.+....+...        ..+......
T Consensus       152 ---~--------~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (366)
T 3k26_A          152 ---A--------IFGGVEGHRDEVLSADYDL-LGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKI  219 (366)
T ss_dssp             ---E--------EECSTTSCSSCEEEEEECT-TSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEE
T ss_pred             ---E--------EecccccccCceeEEEECC-CCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceee
Confidence               0        1111234678899999999 5789999999999999999876533222110        000000000


Q ss_pred             ccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 004468          267 FCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (751)
Q Consensus       267 ~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~  311 (751)
                      ..+......+|.. .|++++|+  +++|++++.|+.|++||+.+.
T Consensus       220 ~~~~~~~~~~~~~-~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~  261 (366)
T 3k26_A          220 HFPDFSTRDIHRN-YVDCVRWL--GDLILSKSCENAIVCWKPGKM  261 (366)
T ss_dssp             CCCSEEECSSCSS-CCCEEEEE--TTEEEEECSSSEEEEEEESST
T ss_pred             ccCccccccCCcc-eEEEEEEc--CCEEEEEecCCEEEEEeCCCc
Confidence            0000011122433 69999999  789999999999999998773

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=1.3e-32  Score=295.44  Aligned_cols=223  Identities=18%  Similarity=0.316  Sum_probs=184.6

Q ss_pred             cccccccchhhhccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCC----eEEEEecccCCcceEEEEE
Q 004468           26 VNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSR----KLLHSIETGHSANVFCTKF  101 (751)
Q Consensus        26 ~~~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~----~~~~~l~~~h~~~V~~v~f  101 (751)
                      .+..+++|+.  .+.+....+..|...|.+++|+|+|++||+|+.|+.|+||++.++    .....+ .+|.+.|.++.|
T Consensus        75 ~Dg~v~iWd~--~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~-~~h~~~v~~~~~  151 (340)
T 1got_B           75 QDGKLIIWDS--YTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSREL-AGHTGYLSCCRF  151 (340)
T ss_dssp             TTTEEEEEET--TTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEE-ECCSSCEEEEEE
T ss_pred             CCCcEEEEEC--CCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEe-cCCCccEEEEEE
Confidence            3567777763  345677889999999999999999999999999999999999765    344455 799999999999


Q ss_pred             ecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCC
Q 004468          102 VPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGS  181 (751)
Q Consensus       102 sp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~  181 (751)
                      +|+   ..|++++.|++|++||+.++          +++..+.+|...|.+++|+| ++.+|++|+.||+|++||++++.
T Consensus       152 ~~~---~~l~s~s~d~~i~~wd~~~~----------~~~~~~~~h~~~v~~~~~~~-~~~~l~sg~~d~~v~~wd~~~~~  217 (340)
T 1got_B          152 LDD---NQIVTSSGDTTCALWDIETG----------QQTTTFTGHTGDVMSLSLAP-DTRLFVSGACDASAKLWDVREGM  217 (340)
T ss_dssp             EET---TEEEEEETTSCEEEEETTTT----------EEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCS
T ss_pred             CCC---CcEEEEECCCcEEEEECCCC----------cEEEEEcCCCCceEEEEECC-CCCEEEEEeCCCcEEEEECCCCe
Confidence            988   35999999999999999864          55788899999999999999 67899999999999999998865


Q ss_pred             CCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCC
Q 004468          182 SCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPP  261 (751)
Q Consensus       182 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~  261 (751)
                      ..                         .....|...|++++|+| ++.+|++|+.|+.|++||+++.+.+..+.      
T Consensus       218 ~~-------------------------~~~~~h~~~v~~v~~~p-~~~~l~s~s~d~~v~iwd~~~~~~~~~~~------  265 (340)
T 1got_B          218 CR-------------------------QTFTGHESDINAICFFP-NGNAFATGSDDATCRLFDLRADQELMTYS------  265 (340)
T ss_dssp             EE-------------------------EEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEEC------
T ss_pred             eE-------------------------EEEcCCcCCEEEEEEcC-CCCEEEEEcCCCcEEEEECCCCcEEEEEc------
Confidence            21                         11223677899999999 47999999999999999998764332211      


Q ss_pred             CccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004468          262 PCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (751)
Q Consensus       262 ~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~  310 (751)
                               +   ..+ ...|++++|+|+|++|++++.|+.|++||+.+
T Consensus       266 ---------~---~~~-~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~  301 (340)
T 1got_B          266 ---------H---DNI-ICGITSVSFSKSGRLLLAGYDDFNCNVWDALK  301 (340)
T ss_dssp             ---------C---TTC-CSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred             ---------c---CCc-ccceEEEEECCCCCEEEEECCCCeEEEEEccc
Confidence                     0   011 12599999999999999999999999999766

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=4.5e-33  Score=298.98  Aligned_cols=216  Identities=13%  Similarity=0.147  Sum_probs=168.1

Q ss_pred             ccEEeccCCCcEEEEEECCCCCE-EEEEeC---CCcEEEEeCCCCeEEEEecccCCcceEEEEEecCC-CCcEEEEEECC
Q 004468           42 QERELEGHQGCVNAISWNSKGSL-LISGSD---DTHINVWSYSSRKLLHSIETGHSANVFCTKFVPET-SDELVVSGAGD  116 (751)
Q Consensus        42 ~~~~L~gH~~~V~~l~~s~dg~~-LaSgs~---Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s-~~~~l~sgs~D  116 (751)
                      ..+.+++|.+.|++++|+|++.. +++|+.   |+.|+|||+.+++.......+|...|.+++|+|+. ++.+|++|+.|
T Consensus        10 ~~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d   89 (357)
T 3i2n_A           10 IAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFG   89 (357)
T ss_dssp             EEEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETT
T ss_pred             hhhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCC
Confidence            34567899999999999999964 456665   99999999998887665545899999999999982 14899999999


Q ss_pred             CcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEE------ecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCC
Q 004468          117 AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAV------EVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSH  190 (751)
Q Consensus       117 g~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~------sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~  190 (751)
                      +.|++||+....         .++..+.+|...|.+++|      +| ++.+|++++.||+|++||++++....      
T Consensus        90 g~i~iwd~~~~~---------~~~~~~~~~~~~v~~~~~~~~~~~s~-~~~~l~~~~~d~~i~vwd~~~~~~~~------  153 (357)
T 3i2n_A           90 GNLHIWNLEAPE---------MPVYSVKGHKEIINAIDGIGGLGIGE-GAPEIVTGSRDGTVKVWDPRQKDDPV------  153 (357)
T ss_dssp             SCEEEECTTSCS---------SCSEEECCCSSCEEEEEEESGGGCC--CCCEEEEEETTSCEEEECTTSCSSCS------
T ss_pred             CeEEEEeCCCCC---------ccEEEEEecccceEEEeeccccccCC-CccEEEEEeCCCeEEEEeCCCCCCcc------
Confidence            999999998642         257888999999999966      56 66899999999999999999875221      


Q ss_pred             CccceEEEecccCceecccCCCCCccceEEEE----EeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCcccc
Q 004468          191 QECRNILLDLRCGAKRSLADPPKQTLSLKSCD----ISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNY  266 (751)
Q Consensus       191 ~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~----~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~  266 (751)
                           ..+....         ......+.+++    |+| ++.+|++++.|+.|++||+++.+....             
T Consensus       154 -----~~~~~~~---------~~~~~~v~~~~~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~-------------  205 (357)
T 3i2n_A          154 -----ANMEPVQ---------GENKRDCWTVAFGNAYNQ-EERVVCAGYDNGDIKLFDLRNMALRWE-------------  205 (357)
T ss_dssp             -----EEECCCT---------TSCCCCEEEEEEECCCC--CCCEEEEEETTSEEEEEETTTTEEEEE-------------
T ss_pred             -----eeccccC---------CCCCCceEEEEEEeccCC-CCCEEEEEccCCeEEEEECccCceeee-------------
Confidence                 0110000         01234678888    677 579999999999999999987542111             


Q ss_pred             ccccccccCCccccceEEEEEcC---CCCEEEEEeCCCcEEEEECCC
Q 004468          267 FCPMHLSEHGRSSLHLTHVTFSP---NGEEVLLSYSGEHVYLMDVNH  310 (751)
Q Consensus       267 ~~~~~~~~~g~~~~~vt~v~fsp---dg~~Ll~~s~d~~I~lwdl~~  310 (751)
                              ..|.. .|++++|+|   ++.+|++++.|+.|++||+.+
T Consensus       206 --------~~~~~-~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~  243 (357)
T 3i2n_A          206 --------TNIKN-GVCSLEFDRKDISMNKLVATSLEGKFHVFDMRT  243 (357)
T ss_dssp             --------EECSS-CEEEEEESCSSSSCCEEEEEESTTEEEEEEEEE
T ss_pred             --------cCCCC-ceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcC
Confidence                    11222 599999999   999999999999999999876

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=7.2e-33  Score=302.66  Aligned_cols=231  Identities=16%  Similarity=0.152  Sum_probs=174.6

Q ss_pred             ccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCe------EEEEecccCCcceEEEEEecC--CCC---c
Q 004468           40 LSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK------LLHSIETGHSANVFCTKFVPE--TSD---E  108 (751)
Q Consensus        40 ~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~------~~~~l~~~h~~~V~~v~fsp~--s~~---~  108 (751)
                      +...+.|.+|.+.|++|+|+|  ++||+|+.||+|+|||+.++.      .+..+ .+|...|.+++|+|+  .++   .
T Consensus         6 ~~~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~g~~~~   82 (397)
T 1sq9_A            6 IATANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSH-FVHKSGLHHVDVLQAIERDAFELC   82 (397)
T ss_dssp             EEEEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEE-ECCTTCEEEEEEEEEEETTTEEEE
T ss_pred             hhhhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEE-ecCCCcEEEEEEecccccCCcccc
Confidence            355678899999999999998  899999999999999999877      67777 699999999999997  126   7


Q ss_pred             EEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeeccc-----CCceeEEEEe----cCCCCE-EEEEeCCCcEEEEecC
Q 004468          109 LVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCH-----TRRVKKLAVE----VGNPHV-VWSASEDGTLRQHDFR  178 (751)
Q Consensus       109 ~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h-----~~~V~~l~~s----p~~~~~-l~s~s~Dg~I~iwDlr  178 (751)
                      +|++++.|+.|++||+.......     ...+..+..|     ...|.+++|+    | ++.+ |++++.||.|++||++
T Consensus        83 ~l~s~~~dg~i~iw~~~~~~~~~-----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~l~~~~~dg~i~iwd~~  156 (397)
T 1sq9_A           83 LVATTSFSGDLLFYRITREDETK-----KVIFEKLDLLDSDMKKHSFWALKWGASNDR-LLSHRLVATDVKGTTYIWKFH  156 (397)
T ss_dssp             EEEEEETTSCEEEEEEEECTTTC-----CEEEEEECCSCTTGGGSCEEEEEEECCC-----CEEEEEEETTSCEEEEEEE
T ss_pred             EEEEEcCCCCEEEEEccCCcccc-----cccceeecccccccCCCcEEEEEEeeccCC-CCceEEEEEeCCCcEEEEeCC
Confidence            99999999999999998642100     0116677788     5999999999    8 5677 9999999999999999


Q ss_pred             C------CCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCcc
Q 004468          179 Q------GSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLT  252 (751)
Q Consensus       179 ~------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~  252 (751)
                      +      ++.....      ....+..       .+.....+...|.+++|+|+ + +|++++.|+.|++||+++.+.+.
T Consensus       157 ~~~~~~~~~~~~~~------~~~~~~~-------~~~~~~~~~~~i~~~~~~~~-~-~l~~~~~dg~i~i~d~~~~~~~~  221 (397)
T 1sq9_A          157 PFADESNSLTLNWS------PTLELQG-------TVESPMTPSQFATSVDISER-G-LIATGFNNGTVQISELSTLRPLY  221 (397)
T ss_dssp             SSSSHHHHTTTCCC------CEEEEEE-------EECCSSSSCCCCCEEEECTT-S-EEEEECTTSEEEEEETTTTEEEE
T ss_pred             ccccccccceeecc------Ccceeee-------eeccccCCCCCceEEEECCC-c-eEEEEeCCCcEEEEECCCCceeE
Confidence            8      4432100      0001100       01111335678999999995 6 99999999999999998765433


Q ss_pred             ccCCCCCCCCccccccccccccCCc--cccceEEEEEcCCCCEEEEEeCC---CcEEEEECCCC
Q 004468          253 SCQKRMSPPPCVNYFCPMHLSEHGR--SSLHLTHVTFSPNGEEVLLSYSG---EHVYLMDVNHA  311 (751)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~g~--~~~~vt~v~fspdg~~Ll~~s~d---~~I~lwdl~~~  311 (751)
                      .+..             .    .+|  ....|++++|+|++++|++++.|   +.|++||+.++
T Consensus       222 ~~~~-------------~----~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~  268 (397)
T 1sq9_A          222 NFES-------------Q----HSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFG  268 (397)
T ss_dssp             EEEC-------------C----C---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTC
T ss_pred             EEec-------------c----ccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCC
Confidence            2210             0    012  02259999999999999999999   99999999874

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-33  Score=313.69  Aligned_cols=221  Identities=15%  Similarity=0.245  Sum_probs=167.6

Q ss_pred             hccccccEEe-ccCCCcEEEEEECC-CCCEEEEEeCCCcEEEEeCCC---CeEEE-EecccCCcceEEEEEecCCCCcEE
Q 004468           37 VRRLSQEREL-EGHQGCVNAISWNS-KGSLLISGSDDTHINVWSYSS---RKLLH-SIETGHSANVFCTKFVPETSDELV  110 (751)
Q Consensus        37 i~~~~~~~~L-~gH~~~V~~l~~s~-dg~~LaSgs~Dg~I~IWd~~~---~~~~~-~l~~~h~~~V~~v~fsp~s~~~~l  110 (751)
                      ..+.+++.+| ++|.+.|++|+|+| ++++||||+.||+|+|||+.+   +.... .+..+|...|.+++|+|+  +.+|
T Consensus        49 ~~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l  126 (437)
T 3gre_A           49 NLRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPN--FDAF  126 (437)
T ss_dssp             GCCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTT--SSEE
T ss_pred             cccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCC--CCEE
Confidence            3556778888 99999999999999 999999999999999999876   43211 221269999999999998  7999


Q ss_pred             EEEECCCcEEEEECCCC-CCCCCCCCCCCCceeecc------------cCCceeEEE--EecCCCCEEEEEeCCCcEEEE
Q 004468          111 VSGAGDAEVRLFNLSRF-SGRGLDDNAITPSALYQC------------HTRRVKKLA--VEVGNPHVVWSASEDGTLRQH  175 (751)
Q Consensus       111 ~sgs~Dg~V~vwd~~~~-~~~~~~~~~~~~~~~~~~------------h~~~V~~l~--~sp~~~~~l~s~s~Dg~I~iw  175 (751)
                      ++|+.|++|++||+... .+        +.+..+..            +...+.++.  +++ ++.+|++++.||+|++|
T Consensus       127 ~s~s~dg~i~vwd~~~~~~~--------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~i~iw  197 (437)
T 3gre_A          127 AVSSKDGQIIVLKVNHYQQE--------SEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNE-EKSLLVALTNLSRVIIF  197 (437)
T ss_dssp             EEEETTSEEEEEEEEEEEET--------TEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECS-SCEEEEEEETTSEEEEE
T ss_pred             EEEeCCCEEEEEEeccccCC--------ceeeccccceeEEEEccCcccccCceEEEEEEcC-CCCEEEEEeCCCeEEEE
Confidence            99999999999999521 11        11222221            455666666  445 56899999999999999


Q ss_pred             ecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccC
Q 004468          176 DFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQ  255 (751)
Q Consensus       176 Dlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~  255 (751)
                      |+++++..           ..+            ..+.|...|++++|+|+ +.+|++|+.|+.|++||+++.+.+..+ 
T Consensus       198 d~~~~~~~-----------~~~------------~~~~h~~~v~~~~~s~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~-  252 (437)
T 3gre_A          198 DIRTLERL-----------QII------------ENSPRHGAVSSICIDEE-CCVLILGTTRGIIDIWDIRFNVLIRSW-  252 (437)
T ss_dssp             ETTTCCEE-----------EEE------------ECCGGGCCEEEEEECTT-SCEEEEEETTSCEEEEETTTTEEEEEE-
T ss_pred             eCCCCeee-----------EEE------------ccCCCCCceEEEEECCC-CCEEEEEcCCCeEEEEEcCCccEEEEE-
Confidence            99886521           111            11115678999999995 899999999999999999976543221 


Q ss_pred             CCCCCCCccccccccccccCCccccceEEEEEc----CCCCEEEEEeCCCcEEEEECCCCC
Q 004468          256 KRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFS----PNGEEVLLSYSGEHVYLMDVNHAG  312 (751)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fs----pdg~~Ll~~s~d~~I~lwdl~~~~  312 (751)
                                  .      .+|.. .|++++|+    |++.+|++++.|+.|+|||+.++.
T Consensus       253 ------------~------~~~~~-~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~  294 (437)
T 3gre_A          253 ------------S------FGDHA-PITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGH  294 (437)
T ss_dssp             ------------B------CTTCE-EEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTE
T ss_pred             ------------e------cCCCC-ceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCc
Confidence                        1      12222 59999555    568899999999999999998854

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.2e-34  Score=321.05  Aligned_cols=243  Identities=10%  Similarity=0.059  Sum_probs=177.2

Q ss_pred             ccEEeccCCCcEEEEEECCCC---------CEEEE-------------------EeCCCcEEEEeCCCCeEE----EEec
Q 004468           42 QERELEGHQGCVNAISWNSKG---------SLLIS-------------------GSDDTHINVWSYSSRKLL----HSIE   89 (751)
Q Consensus        42 ~~~~L~gH~~~V~~l~~s~dg---------~~LaS-------------------gs~Dg~I~IWd~~~~~~~----~~l~   89 (751)
                      ...++. +.+.|++|+|+|++         ++||+                   |+.|++|+|||+.+++..    ..+ 
T Consensus       126 ~~~~~~-~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l-  203 (524)
T 2j04_B          126 RGFIYN-VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTI-  203 (524)
T ss_dssp             CEEEEE-CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEE-
T ss_pred             ceEEEE-CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEE-
Confidence            334444 67899999999986         56666                   557899999998776532    334 


Q ss_pred             ccCCcceEEEEEecC----CCCcEEEEEECCCcEEEEECCCCCCCCC-CCCCCCCceeecccCCceeEEEEecCCCCEEE
Q 004468           90 TGHSANVFCTKFVPE----TSDELVVSGAGDAEVRLFNLSRFSGRGL-DDNAITPSALYQCHTRRVKKLAVEVGNPHVVW  164 (751)
Q Consensus        90 ~~h~~~V~~v~fsp~----s~~~~l~sgs~Dg~V~vwd~~~~~~~~~-~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~  164 (751)
                      .+|.+.|.+|+|+|+    .++.+||+|+.|++|+|||+........ ......+...+.+|...|++++|++ + ..|+
T Consensus       204 ~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~-~-~~la  281 (524)
T 2j04_B          204 VHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLS-P-TTVV  281 (524)
T ss_dssp             EECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESS-S-SEEE
T ss_pred             EecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecC-C-CeEE
Confidence            578899999999996    1257999999999999999985421100 0000134567889999999999998 3 4899


Q ss_pred             EEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEE--EEeCCCC-cEEEEEeCCCeEE
Q 004468          165 SASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSC--DISSTRP-HLLLVGGSDAFAR  241 (751)
Q Consensus       165 s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i--~~sp~~~-~~l~sgs~D~~Ir  241 (751)
                      +|+.||+|++||++++...                        ......|...|+++  .|+| ++ .+|++|+.|++|+
T Consensus       282 sgs~DgtV~lWD~~~~~~~------------------------~~~~~~H~~~V~sv~~~~s~-~g~~~laS~S~D~tvk  336 (524)
T 2j04_B          282 CGFKNGFVAEFDLTDPEVP------------------------SFYDQVHDSYILSVSTAYSD-FEDTVVSTVAVDGYFY  336 (524)
T ss_dssp             EEETTSEEEEEETTBCSSC------------------------SEEEECSSSCEEEEEEECCT-TSCCEEEEEETTSEEE
T ss_pred             EEeCCCEEEEEECCCCCCc------------------------eEEeecccccEEEEEEEcCC-CCCeEEEEeccCCeEE
Confidence            9999999999999875321                        00112367789999  5667 45 8999999999999


Q ss_pred             EEeCCCCCCccccCCCCCCCCccccccccccccCCccc-cceEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcceeeeec
Q 004468          242 LYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS-LHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTV  320 (751)
Q Consensus       242 iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~~~~~  320 (751)
                      |||+++.+....             +       .+|.. ..|.+++|+|+++.|++++.|++|+|||+.++........+
T Consensus       337 lWD~~~~~~~~~-------------~-------~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH  396 (524)
T 2j04_B          337 IFNPKDIATTKT-------------T-------VSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSR  396 (524)
T ss_dssp             EECGGGHHHHCE-------------E-------EEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEEC
T ss_pred             EEECCCCCcccc-------------c-------ccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecC
Confidence            999987542211             1       11211 13788999999999999999999999999997665666677


Q ss_pred             CCCceeEEeCCCC
Q 004468          321 GDASKIMSFTPTL  333 (751)
Q Consensus       321 ~~~~~~~~~sp~~  333 (751)
                      ...+..++|+|+.
T Consensus       397 ~~~V~sva~Sp~g  409 (524)
T 2j04_B          397 ETTITAIGVSRLH  409 (524)
T ss_dssp             SSCEEEEECCSSC
T ss_pred             CCceEEEEeCCCC
Confidence            7788888888854

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.3e-33  Score=306.70  Aligned_cols=230  Identities=12%  Similarity=0.092  Sum_probs=168.5

Q ss_pred             EEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCC--eEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEE
Q 004468           44 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSR--KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRL  121 (751)
Q Consensus        44 ~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~--~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~v  121 (751)
                      ..++.|.+.|++++|+|+|++||+|+.|+.|+|||+.++  +.+..+ .+|...|.+++|+|+  +++|++|+.|++|+|
T Consensus         5 ~~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~-~~h~~~v~~~~~s~~--~~~l~s~s~d~~v~v   81 (377)
T 3dwl_C            5 QVLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTF-SDHDKIVTCVDWAPK--SNRIVTCSQDRNAYV   81 (377)
T ss_dssp             EEEEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCB-CCCSSCEEEEEECTT--TCCEEEEETTSSEEE
T ss_pred             eeEecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEE-ecCCceEEEEEEeCC--CCEEEEEeCCCeEEE
Confidence            345567889999999999999999999999999999988  666677 799999999999999  799999999999999


Q ss_pred             EECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecc
Q 004468          122 FNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLR  201 (751)
Q Consensus       122 wd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~  201 (751)
                      ||+.....       ..+...+.+|...|.+++|+| ++.+|++++.|++|++||+++++...        +        
T Consensus        82 wd~~~~~~-------~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~--------~--------  137 (377)
T 3dwl_C           82 YEKRPDGT-------WKQTLVLLRLNRAATFVRWSP-NEDKFAVGSGARVISVCYFEQENDWW--------V--------  137 (377)
T ss_dssp             C------C-------CCCEEECCCCSSCEEEEECCT-TSSCCEEEESSSCEEECCC-----CC--------C--------
T ss_pred             EEcCCCCc-------eeeeeEecccCCceEEEEECC-CCCEEEEEecCCeEEEEEECCcccce--------e--------
Confidence            99986420       135677888999999999999 67889999999999999998875210        0        


Q ss_pred             cCceecccCCCC-CccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCcccc
Q 004468          202 CGAKRSLADPPK-QTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSL  280 (751)
Q Consensus       202 ~~~~~~~~~~~~-~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  280 (751)
                            +..... |...|++++|+| ++.+|++++.|+.|++||++........... ..............  .+|.. 
T Consensus       138 ------~~~~~~~h~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~-  206 (377)
T 3dwl_C          138 ------SKHLKRPLRSTILSLDWHP-NNVLLAAGCADRKAYVLSAYVRDVDAKPEAS-VWGSRLPFNTVCAE--YPSGG-  206 (377)
T ss_dssp             ------CEEECSSCCSCEEEEEECT-TSSEEEEEESSSCEEEEEECCSSCC-CCCSC-SSCSCCCEEEEEEC--CCCSS-
T ss_pred             ------eeEeecccCCCeEEEEEcC-CCCEEEEEeCCCEEEEEEEEecccCCCcccc-ccccccchhhhhhc--ccCCc-
Confidence                  001112 667899999999 5799999999999999999754321110000 00000000000001  13433 


Q ss_pred             ceEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 004468          281 HLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (751)
Q Consensus       281 ~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~  311 (751)
                      .|++++|+|+|++|++++.|+.|+|||+.++
T Consensus       207 ~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~  237 (377)
T 3dwl_C          207 WVHAVGFSPSGNALAYAGHDSSVTIAYPSAP  237 (377)
T ss_dssp             SEEEEEECTTSSCEEEEETTTEEC-CEECST
T ss_pred             eEEEEEECCCCCEEEEEeCCCcEEEEECCCC
Confidence            6999999999999999999999999998873

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=1.5e-32  Score=329.45  Aligned_cols=241  Identities=15%  Similarity=0.221  Sum_probs=202.6

Q ss_pred             cccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCc
Q 004468           39 RLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAE  118 (751)
Q Consensus        39 ~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~  118 (751)
                      +++..+.|.+|.+.|++++|+|+|++||+|+.||.|+|||+.+++.+..+ .+|.+.|.+++|+|+  +++|++|+.|+.
T Consensus         2 ~l~~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~-~~~~~~v~~~~~s~~--~~~l~~~~~dg~   78 (814)
T 3mkq_A            2 KLDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSI-QVTETPVRAGKFIAR--KNWIIVGSDDFR   78 (814)
T ss_dssp             CCCCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEE-ECCSSCEEEEEEEGG--GTEEEEEETTSE
T ss_pred             CcccceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEE-ecCCCcEEEEEEeCC--CCEEEEEeCCCe
Confidence            46678899999999999999999999999999999999999999999998 799999999999999  899999999999


Q ss_pred             EEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEE
Q 004468          119 VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILL  198 (751)
Q Consensus       119 V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~  198 (751)
                      |+|||+.++          +.+..+.+|...|++++|+| ++.+|++++.||+|++||++++..+               
T Consensus        79 i~vw~~~~~----------~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vw~~~~~~~~---------------  132 (814)
T 3mkq_A           79 IRVFNYNTG----------EKVVDFEAHPDYIRSIAVHP-TKPYVLSGSDDLTVKLWNWENNWAL---------------  132 (814)
T ss_dssp             EEEEETTTC----------CEEEEEECCSSCEEEEEECS-SSSEEEEEETTSEEEEEEGGGTSEE---------------
T ss_pred             EEEEECCCC----------cEEEEEecCCCCEEEEEEeC-CCCEEEEEcCCCEEEEEECCCCceE---------------
Confidence            999999864          55788899999999999999 6688999999999999999875311               


Q ss_pred             ecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCcc
Q 004468          199 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRS  278 (751)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  278 (751)
                               ......|...|.+++|+|.++.+|++++.|+.|++||++.......+                    ..+.
T Consensus       133 ---------~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~--------------------~~~~  183 (814)
T 3mkq_A          133 ---------EQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTL--------------------TTGQ  183 (814)
T ss_dssp             ---------EEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEE--------------------ECCC
T ss_pred             ---------EEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEE--------------------ecCC
Confidence                     01112356789999999965789999999999999999865533221                    1122


Q ss_pred             ccceEEEEEcC--CCCEEEEEeCCCcEEEEECCCCCcceeeeecCCCceeEEeCCCCCCcc
Q 004468          279 SLHLTHVTFSP--NGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLE  337 (751)
Q Consensus       279 ~~~vt~v~fsp--dg~~Ll~~s~d~~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp~~~~~~  337 (751)
                      ...++.++|+|  ++.+|++++.|+.|++||+.++........+...+..++|+|+...+.
T Consensus       184 ~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  244 (814)
T 3mkq_A          184 ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIII  244 (814)
T ss_dssp             TTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEE
T ss_pred             CCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEE
Confidence            22589999999  999999999999999999998765555555677788899999766443

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3e-32  Score=286.83  Aligned_cols=209  Identities=20%  Similarity=0.237  Sum_probs=171.8

Q ss_pred             ccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCC
Q 004468           38 RRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA  117 (751)
Q Consensus        38 ~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg  117 (751)
                      ...++.++|.+|.+.|++++| +++++||+|+.||.|+|||+.++.....+ ..|...|.+++|+|+  +.+|++|+.|+
T Consensus         6 ~~~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~-~~~~~~v~~~~~~~~--~~~l~~~~~dg   81 (313)
T 3odt_A            6 TGYQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVV-YTGQGFLNSVCYDSE--KELLLFGGKDT   81 (313)
T ss_dssp             CCCEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEE-EECSSCEEEEEEETT--TTEEEEEETTS
T ss_pred             ccHHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEe-ecCCccEEEEEECCC--CCEEEEecCCC
Confidence            355788999999999999999 99999999999999999999988888887 789999999999999  89999999999


Q ss_pred             cEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEE
Q 004468          118 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNIL  197 (751)
Q Consensus       118 ~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l  197 (751)
                      .|++|++.....       .+++..+.+|...|.+++|.   +.+|++++.||+|++||  ...              .+
T Consensus        82 ~i~~~~~~~~~~-------~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~~~d--~~~--------------~~  135 (313)
T 3odt_A           82 MINGVPLFATSG-------EDPLYTLIGHQGNVCSLSFQ---DGVVISGSWDKTAKVWK--EGS--------------LV  135 (313)
T ss_dssp             CEEEEETTCCTT-------SCC-CEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEE--TTE--------------EE
T ss_pred             eEEEEEeeecCC-------CCcccchhhcccCEEEEEec---CCEEEEEeCCCCEEEEc--CCc--------------EE
Confidence            999999986432       24577888999999999994   46899999999999999  221              01


Q ss_pred             EecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCc
Q 004468          198 LDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGR  277 (751)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  277 (751)
                                 .....+...+.++.|+|.++.++++++.|+.|++||....               ...+       ...
T Consensus       136 -----------~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~---------------~~~~-------~~~  182 (313)
T 3odt_A          136 -----------YNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDKV---------------IKTF-------SGI  182 (313)
T ss_dssp             -----------EEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETTEE---------------EEEE-------CSS
T ss_pred             -----------EecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecCce---------------EEEE-------ecc
Confidence                       1111256789999999866899999999999999994421               1111       111


Q ss_pred             cccceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004468          278 SSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (751)
Q Consensus       278 ~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~  310 (751)
                      ....|++++|+|++. |++++.|+.|++||+.+
T Consensus       183 ~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~  214 (313)
T 3odt_A          183 HNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHT  214 (313)
T ss_dssp             CSSCEEEEEEEETTE-EEEEETTSEEEEEETTT
T ss_pred             CcccEEEEEEcCCCe-EEEccCCCeEEEEECCc
Confidence            222599999999999 99999999999999876

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=1.8e-32  Score=296.32  Aligned_cols=224  Identities=15%  Similarity=0.162  Sum_probs=174.4

Q ss_pred             EeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCe--EEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEE
Q 004468           45 ELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK--LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLF  122 (751)
Q Consensus        45 ~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~--~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vw  122 (751)
                      .+..|.+.|++++|+|+|++||+|+.|+.|+|||+.+++  .+..+ .+|...|.+++|+|+  +++|++++.|+.|++|
T Consensus         3 ~~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~--~~~l~~~~~dg~i~vw   79 (372)
T 1k8k_C            3 YHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHEL-KEHNGQVTGVDWAPD--SNRIVTCGTDRNAYVW   79 (372)
T ss_dssp             EEESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEE-ECCSSCEEEEEEETT--TTEEEEEETTSCEEEE
T ss_pred             eecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeee-cCCCCcccEEEEeCC--CCEEEEEcCCCeEEEE
Confidence            355699999999999999999999999999999999887  77777 799999999999998  8999999999999999


Q ss_pred             ECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEeccc
Q 004468          123 NLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRC  202 (751)
Q Consensus       123 d~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~  202 (751)
                      |+.....        .....+..|...|.+++|+| ++.+|++++.||.|++||++.....           ....    
T Consensus        80 d~~~~~~--------~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~i~d~~~~~~~-----------~~~~----  135 (372)
T 1k8k_C           80 TLKGRTW--------KPTLVILRINRAARCVRWAP-NEKKFAVGSGSRVISICYFEQENDW-----------WVCK----  135 (372)
T ss_dssp             EEETTEE--------EEEEECCCCSSCEEEEEECT-TSSEEEEEETTSSEEEEEEETTTTE-----------EEEE----
T ss_pred             ECCCCee--------eeeEEeecCCCceeEEEECC-CCCEEEEEeCCCEEEEEEecCCCcc-----------eeee----
Confidence            9975321        22344567999999999999 6789999999999999999876521           0000    


Q ss_pred             CceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccC-----CCCCCCCccccccccccccCCc
Q 004468          203 GAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQ-----KRMSPPPCVNYFCPMHLSEHGR  277 (751)
Q Consensus       203 ~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~g~  277 (751)
                            .....|...|.+++|+| ++.+|++++.|+.|++||++.........     .......++..+       .+|
T Consensus       136 ------~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~  201 (372)
T 1k8k_C          136 ------HIKKPIRSTVLSLDWHP-NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFES-------SSS  201 (372)
T ss_dssp             ------EECTTCCSCEEEEEECT-TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEEC-------CCC
T ss_pred             ------eeecccCCCeeEEEEcC-CCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEec-------CCC
Confidence                  11123567899999999 57899999999999999986432111000     000011112211       133


Q ss_pred             cccceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004468          278 SSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (751)
Q Consensus       278 ~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~  310 (751)
                      .. .|++++|+|++++|++++.|+.|++||+.+
T Consensus       202 ~~-~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~  233 (372)
T 1k8k_C          202 CG-WVHGVCFSANGSRVAWVSHDSTVCLADADK  233 (372)
T ss_dssp             SS-CEEEEEECSSSSEEEEEETTTEEEEEEGGG
T ss_pred             CC-eEEEEEECCCCCEEEEEeCCCEEEEEECCC
Confidence            33 699999999999999999999999999876

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=1.3e-32  Score=292.69  Aligned_cols=227  Identities=11%  Similarity=0.101  Sum_probs=175.8

Q ss_pred             CCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCC
Q 004468           49 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFS  128 (751)
Q Consensus        49 H~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~  128 (751)
                      |.+.|.+++|+|+|++|+++..++.+.+|........... .+|...|.+++|+|+  +++|++++ |+.|++||+....
T Consensus         8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~--~~~l~~~~-dg~i~iw~~~~~~   83 (337)
T 1gxr_A            8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINT-LNHGEVVCAVTISNP--TRHVYTGG-KGCVKVWDISHPG   83 (337)
T ss_dssp             EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEE-ECCSSCCCEEEECSS--SSEEEEEC-BSEEEEEETTSTT
T ss_pred             cCCceeEEEECCCCCEEEeecCCCcEeccccCCcccccee-ccCCCceEEEEEecC--CcEEEEcC-CCeEEEEECCCCC
Confidence            5678999999999999999988888888876655555444 489999999999999  79999998 9999999998643


Q ss_pred             CCCCCCCCCCCceeec--ccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCcee
Q 004468          129 GRGLDDNAITPSALYQ--CHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKR  206 (751)
Q Consensus       129 ~~~~~~~~~~~~~~~~--~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~  206 (751)
                      ..       ..+..+.  .|...|.+++|+| ++.+|++++.||.|++||+++++..            ..         
T Consensus        84 ~~-------~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~------------~~---------  134 (337)
T 1gxr_A           84 NK-------SPVSQLDCLNRDNYIRSCKLLP-DGCTLIVGGEASTLSIWDLAAPTPR------------IK---------  134 (337)
T ss_dssp             CC-------SCSEEEECSCTTSBEEEEEECT-TSSEEEEEESSSEEEEEECCCC--E------------EE---------
T ss_pred             ce-------eeeecccccCCCCcEEEEEEcC-CCCEEEEEcCCCcEEEEECCCCCcc------------ee---------
Confidence            21       2334443  7999999999999 6789999999999999999876411            11         


Q ss_pred             cccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEE
Q 004468          207 SLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVT  286 (751)
Q Consensus       207 ~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~  286 (751)
                        .....+...|.+++|+| ++.+|++++.|+.|++||+++.+.+..+                    .+|.. .|++++
T Consensus       135 --~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~v~~~d~~~~~~~~~~--------------------~~~~~-~i~~~~  190 (337)
T 1gxr_A          135 --AELTSSAPACYALAISP-DSKVCFSCCSDGNIAVWDLHNQTLVRQF--------------------QGHTD-GASCID  190 (337)
T ss_dssp             --EEEECSSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEE--------------------CCCSS-CEEEEE
T ss_pred             --eecccCCCceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCceeeee--------------------ecccC-ceEEEE
Confidence              11122566799999999 5789999999999999999876533221                    12333 599999


Q ss_pred             EcCCCCEEEEEeCCCcEEEEECCCCCcceeeeecCCCceeEEeCCCC
Q 004468          287 FSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTL  333 (751)
Q Consensus       287 fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp~~  333 (751)
                      |+|++++|++++.|+.|++||+.++. ....+.....+..++|+|+.
T Consensus       191 ~~~~~~~l~~~~~dg~i~~~d~~~~~-~~~~~~~~~~v~~~~~s~~~  236 (337)
T 1gxr_A          191 ISNDGTKLWTGGLDNTVRSWDLREGR-QLQQHDFTSQIFSLGYCPTG  236 (337)
T ss_dssp             ECTTSSEEEEEETTSEEEEEETTTTE-EEEEEECSSCEEEEEECTTS
T ss_pred             ECCCCCEEEEEecCCcEEEEECCCCc-eEeeecCCCceEEEEECCCC
Confidence            99999999999999999999999854 33333445556666666653

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-32  Score=332.48  Aligned_cols=232  Identities=10%  Similarity=0.065  Sum_probs=175.2

Q ss_pred             eccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECC
Q 004468           46 LEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLS  125 (751)
Q Consensus        46 L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~  125 (751)
                      ..||.+.|++|+|+|+|++||+|+.||+|+||+..+.+....+  .|...|.+++|+|.   ++|++++.|++|+|||+.
T Consensus        13 ~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~--~~~~~V~~l~fspg---~~L~S~s~D~~v~lWd~~   87 (902)
T 2oaj_A           13 KYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKL--EDRSAIKEMRFVKG---IYLVVINAKDTVYVLSLY   87 (902)
T ss_dssp             EEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEEC--SSCCCEEEEEEETT---TEEEEEETTCEEEEEETT
T ss_pred             ccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEc--CCCCCEEEEEEcCC---CEEEEEECcCeEEEEECC
Confidence            4589999999999999999999999999999999887766554  58899999999993   599999999999999998


Q ss_pred             CCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCce
Q 004468          126 RFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAK  205 (751)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~  205 (751)
                      ++          +++..+. |...|++++|+| ++.+|++|+.||+|++||++++...             .+..  ...
T Consensus        88 ~~----------~~~~~~~-~~~~V~~v~~sp-~g~~l~sgs~dg~V~lwd~~~~~~~-------------~~~i--~~~  140 (902)
T 2oaj_A           88 SQ----------KVLTTVF-VPGKITSIDTDA-SLDWMLIGLQNGSMIVYDIDRDQLS-------------SFKL--DNL  140 (902)
T ss_dssp             TC----------SEEEEEE-CSSCEEEEECCT-TCSEEEEEETTSCEEEEETTTTEEE-------------EEEE--CCH
T ss_pred             CC----------cEEEEEc-CCCCEEEEEECC-CCCEEEEEcCCCcEEEEECCCCccc-------------ccee--ccc
Confidence            64          3456664 778999999999 6789999999999999999876411             0000  000


Q ss_pred             ecc-cCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEE
Q 004468          206 RSL-ADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTH  284 (751)
Q Consensus       206 ~~~-~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~  284 (751)
                      ... .....|...|++++|+|+++.++++|+.|+.| +||+++.+.+..+.....+..... .... ....+|. ..|++
T Consensus       141 ~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~-~~~~-~~~~~h~-~~V~~  216 (902)
T 2oaj_A          141 QKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGG-DFSE-KTNEKRT-PKVIQ  216 (902)
T ss_dssp             HHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCS-TTCC-CTTSCBC-CCEEE
T ss_pred             cccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCc-cccc-ccccccC-CCeEE
Confidence            000 22345778999999999767899999999999 999998765443321100000000 0000 0011222 36999


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEECCCCCc
Q 004468          285 VTFSPNGEEVLLSYSGEHVYLMDVNHAGG  313 (751)
Q Consensus       285 v~fspdg~~Ll~~s~d~~I~lwdl~~~~~  313 (751)
                      ++|+|+|++|++++.|+.|+|||+.+++.
T Consensus       217 v~fspdg~~lasgs~Dg~i~lWd~~~g~~  245 (902)
T 2oaj_A          217 SLYHPNSLHIITIHEDNSLVFWDANSGHM  245 (902)
T ss_dssp             EEECTTSSEEEEEETTCCEEEEETTTCCE
T ss_pred             EEEcCCCCEEEEEECCCeEEEEECCCCcE
Confidence            99999999999999999999999998653

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=1.6e-31  Score=294.47  Aligned_cols=242  Identities=13%  Similarity=0.120  Sum_probs=181.1

Q ss_pred             ccccccchhhhccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCC
Q 004468           27 NHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETS  106 (751)
Q Consensus        27 ~~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~  106 (751)
                      +..+++|+.  .+.+....+.+| ..+....|++++++||+|+.|+.|+|||+.+++....+ .+|.+.|.+++|+|+  
T Consensus        77 d~~v~i~d~--~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~h~~~v~~~~~~~~--  150 (420)
T 3vl1_A           77 DGHDFLFNT--IIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREID-QAHVSEITKLKFFPS--  150 (420)
T ss_dssp             TTEEEEEEC--CSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEET-TSSSSCEEEEEECTT--
T ss_pred             CCcEEEEEe--cccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeec-ccccCccEEEEECCC--
Confidence            455666653  333344556666 45556678999999999999999999999988887776 799999999999999  


Q ss_pred             CcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCC
Q 004468          107 DELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPA  186 (751)
Q Consensus       107 ~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~  186 (751)
                      +++|++|+.|++|++||+..+          +.+..+.+|...|.+++|+| ++.+|++++.||+|++||+++++.....
T Consensus       151 ~~~l~s~s~d~~i~iwd~~~~----------~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d~~v~iwd~~~~~~~~~~  219 (420)
T 3vl1_A          151 GEALISSSQDMQLKIWSVKDG----------SNPRTLIGHRATVTDIAIID-RGRNVLSASLDGTIRLWECGTGTTIHTF  219 (420)
T ss_dssp             SSEEEEEETTSEEEEEETTTC----------CCCEEEECCSSCEEEEEEET-TTTEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred             CCEEEEEeCCCeEEEEeCCCC----------cCceEEcCCCCcEEEEEEcC-CCCEEEEEcCCCcEEEeECCCCceeEEe
Confidence            799999999999999999864          45788899999999999999 6789999999999999999987643211


Q ss_pred             CCC--CCc-cceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCc
Q 004468          187 GSS--HQE-CRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPC  263 (751)
Q Consensus       187 ~~~--~~~-~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~  263 (751)
                      ...  +.. ...+.+.......    ....+...+.+++|+| ++.+|++|+.|+.|++||+++.+....+.        
T Consensus       220 ~~~~~~~~~v~~~~~~~~~~~~----~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--------  286 (420)
T 3vl1_A          220 NRKENPHDGVNSIALFVGTDRQ----LHEISTSKKNNLEFGT-YGKYVIAGHVSGVITVHNVFSKEQTIQLP--------  286 (420)
T ss_dssp             CBTTBTTCCEEEEEEEECCCSS----CGGGCCCCCCTTCSSC-TTEEEEEEETTSCEEEEETTTCCEEEEEC--------
T ss_pred             ecCCCCCCCccEEEEecCCcce----eeecccCcccceEEcC-CCCEEEEEcCCCeEEEEECCCCceeEEcc--------
Confidence            110  000 0001110000000    0011335677788889 57999999999999999998765332210        


Q ss_pred             cccccccccccCCccccceEEEEEcCCCC-EEEEEeCCCcEEEEECCC
Q 004468          264 VNYFCPMHLSEHGRSSLHLTHVTFSPNGE-EVLLSYSGEHVYLMDVNH  310 (751)
Q Consensus       264 ~~~~~~~~~~~~g~~~~~vt~v~fspdg~-~Ll~~s~d~~I~lwdl~~  310 (751)
                                 .+|.. .|++++|+|+++ +|++++.|+.|++||+.+
T Consensus       287 -----------~~~~~-~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~  322 (420)
T 3vl1_A          287 -----------SKFTC-SCNSLTVDGNNANYIYAGYENGMLAQWDLRS  322 (420)
T ss_dssp             -----------CTTSS-CEEEEEECSSCTTEEEEEETTSEEEEEETTC
T ss_pred             -----------cccCC-CceeEEEeCCCCCEEEEEeCCCeEEEEEcCC
Confidence                       12222 599999999999 999999999999999887

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=4.8e-32  Score=293.21  Aligned_cols=213  Identities=17%  Similarity=0.206  Sum_probs=168.8

Q ss_pred             cccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEe---cccCCcceEEEEEecCCCCcEEEEEECCC
Q 004468           41 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSI---ETGHSANVFCTKFVPETSDELVVSGAGDA  117 (751)
Q Consensus        41 ~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l---~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg  117 (751)
                      .......+|.+.|++|+|+|+++ +++++.||+|+|||+.+++.+...   ..+|.+.|.+++|+|+  +++|++|+.|+
T Consensus        85 ~~~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spd--g~~l~sgs~dg  161 (357)
T 4g56_B           85 SLCTAGVQTEAGVTDVAWVSEKG-ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSD--GTQAVSGGKDF  161 (357)
T ss_dssp             GGCSEEEECSSCEEEEEEETTTE-EEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSS--SSEEEEEETTS
T ss_pred             eEecccCCCCCCEEEEEEcCCCC-EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCC--CCEEEEEeCCC
Confidence            34455678999999999999986 556788999999999887654322   2489999999999999  89999999999


Q ss_pred             cEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEE
Q 004468          118 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNIL  197 (751)
Q Consensus       118 ~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l  197 (751)
                      +|+|||+.++          +++..+.+|...|++++|+|++..+|++++.||+|++||+++++....            
T Consensus       162 ~v~iwd~~~~----------~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~------------  219 (357)
T 4g56_B          162 SVKVWDLSQK----------AVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATR------------  219 (357)
T ss_dssp             CEEEEETTTT----------EEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCB------------
T ss_pred             eEEEEECCCC----------cEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeee------------
Confidence            9999999864          557889999999999999997767899999999999999998764311            


Q ss_pred             EecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCc
Q 004468          198 LDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGR  277 (751)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  277 (751)
                                 .....+...+++++|+|+++.+|++|+.|+.|++||+++.+.+..+                    .+|
T Consensus       220 -----------~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~--------------------~~~  268 (357)
T 4g56_B          220 -----------IDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTS--------------------AVH  268 (357)
T ss_dssp             -----------CCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEE--------------------CCC
T ss_pred             -----------eeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEE--------------------ecc
Confidence                       1122345678999999987889999999999999999876543222                    234


Q ss_pred             cccceEEEEEcCCC-CEEEEEeCCCcEEEEECCC
Q 004468          278 SSLHLTHVTFSPNG-EEVLLSYSGEHVYLMDVNH  310 (751)
Q Consensus       278 ~~~~vt~v~fspdg-~~Ll~~s~d~~I~lwdl~~  310 (751)
                      .. .|++++|+|++ ++|++++.|+.|+|||+++
T Consensus       269 ~~-~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~  301 (357)
T 4g56_B          269 SQ-NITGLAYSYHSSPFLASISEDCTVAVLDADF  301 (357)
T ss_dssp             SS-CEEEEEECSSSSCCEEEEETTSCEEEECTTS
T ss_pred             ce-eEEEEEEcCCCCCEEEEEeCCCEEEEEECCC
Confidence            33 59999999998 5788999999999999766

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=6e-32  Score=285.47  Aligned_cols=251  Identities=16%  Similarity=0.204  Sum_probs=208.6

Q ss_pred             cccccccchhhhccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCC
Q 004468           26 VNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPET  105 (751)
Q Consensus        26 ~~~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s  105 (751)
                      .+..+++|+.  .+...++.+.+|...|++++|+|++++|++|+.|++|+|||+.+++.+..+ .+|.+.|.+++|+|+ 
T Consensus        33 ~dg~v~lWd~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~-~~h~~~v~~~~~~~~-  108 (304)
T 2ynn_A           33 YSGRVELWNY--ETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDF-EAHPDYIRSIAVHPT-  108 (304)
T ss_dssp             TTSEEEEEET--TTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEE-ECCSSCEEEEEECSS-
T ss_pred             CCCcEEEEEC--CCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEE-eCCCCcEEEEEEcCC-
Confidence            5678888874  455678899999999999999999999999999999999999999999988 899999999999999 


Q ss_pred             CCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCC
Q 004468          106 SDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPP  185 (751)
Q Consensus       106 ~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~  185 (751)
                       +.+|++|+.|++|++||+....         .....+.+|...|.+++|+|.++.+|++|+.||+|++||++.....  
T Consensus       109 -~~~l~sgs~D~~v~lWd~~~~~---------~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~--  176 (304)
T 2ynn_A          109 -KPYVLSGSDDLTVKLWNWENNW---------ALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPN--  176 (304)
T ss_dssp             -SSEEEEEETTSCEEEEEGGGTT---------EEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCS--
T ss_pred             -CCEEEEECCCCeEEEEECCCCc---------chhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCcc--
Confidence             7999999999999999998531         3356788999999999999977889999999999999999876532  


Q ss_pred             CCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCC-CCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCcc
Q 004468          186 AGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISST-RPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCV  264 (751)
Q Consensus       186 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~-~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~  264 (751)
                               ..+             ...+...+..++|+|. ++.+|++|+.|+.|++||+++.+.+..           
T Consensus       177 ---------~~~-------------~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~-----------  223 (304)
T 2ynn_A          177 ---------FTL-------------TTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVAT-----------  223 (304)
T ss_dssp             ---------EEE-------------ECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEE-----------
T ss_pred             ---------cee-------------ccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCcccee-----------
Confidence                     011             1124456888899873 467999999999999999987653322           


Q ss_pred             ccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcceeeeecCCCceeEEeCCCCCC
Q 004468          265 NYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNG  335 (751)
Q Consensus       265 ~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp~~~~  335 (751)
                        +       .+|.. .|++++|+|++++|++++.|+.|+|||+.+.+.......+...+..++++|....
T Consensus       224 --~-------~~h~~-~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (304)
T 2ynn_A          224 --L-------EGHMS-NVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRK  284 (304)
T ss_dssp             --E-------ECCSS-CEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGG
T ss_pred             --e-------CCCCC-CEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCc
Confidence              2       34544 5999999999999999999999999999997655555555666778888887654

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=8.9e-32  Score=286.26  Aligned_cols=223  Identities=16%  Similarity=0.235  Sum_probs=185.3

Q ss_pred             ccccccccchhhhcc---ccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEE
Q 004468           25 DVNHSLQMHSSLVRR---LSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKF  101 (751)
Q Consensus        25 ~~~~~l~~~~~~i~~---~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~f  101 (751)
                      ..+..+++|+.....   ..++++|++|...|++++|+|+|++|+||+.|++|+|||+.+++.+..+ .+|...|.+++|
T Consensus        37 s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~-~~h~~~v~~~~~  115 (319)
T 3frx_A           37 SRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRF-VGHKSDVMSVDI  115 (319)
T ss_dssp             ETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE-ECCSSCEEEEEE
T ss_pred             cCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEE-ccCCCcEEEEEE
Confidence            346778888653222   3457889999999999999999999999999999999999999999988 899999999999


Q ss_pred             ecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecC-----CCCEEEEEeCCCcEEEEe
Q 004468          102 VPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVG-----NPHVVWSASEDGTLRQHD  176 (751)
Q Consensus       102 sp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~-----~~~~l~s~s~Dg~I~iwD  176 (751)
                      +|+  +.+|++|+.|++|+|||+..           .++..+.+|...|.+++|.|.     ++.+|++++.|++|++||
T Consensus       116 ~~~--~~~l~s~s~D~~i~vwd~~~-----------~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd  182 (319)
T 3frx_A          116 DKK--ASMIISGSRDKTIKVWTIKG-----------QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWN  182 (319)
T ss_dssp             CTT--SCEEEEEETTSCEEEEETTS-----------CEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEE
T ss_pred             cCC--CCEEEEEeCCCeEEEEECCC-----------CeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEE
Confidence            999  79999999999999999973           457788899999999999984     334899999999999999


Q ss_pred             cCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCC
Q 004468          177 FRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQK  256 (751)
Q Consensus       177 lr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~  256 (751)
                      +++.+..                         ....+|...|++++|+| ++.+|++|+.|+.|+|||+++.+.+..+  
T Consensus       183 ~~~~~~~-------------------------~~~~~h~~~v~~~~~sp-~g~~l~s~~~dg~i~iwd~~~~~~~~~~--  234 (319)
T 3frx_A          183 LNQFQIE-------------------------ADFIGHNSNINTLTASP-DGTLIASAGKDGEIMLWNLAAKKAMYTL--  234 (319)
T ss_dssp             TTTTEEE-------------------------EEECCCCSCEEEEEECT-TSSEEEEEETTCEEEEEETTTTEEEEEE--
T ss_pred             CCcchhh-------------------------eeecCCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCcEEEEe--
Confidence            9875411                         11224678899999999 5899999999999999999876533221  


Q ss_pred             CCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004468          257 RMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (751)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~  310 (751)
                                        ..+  ..|.+++|+|++.+|++++. +.+++|++..
T Consensus       235 ------------------~~~--~~v~~~~~sp~~~~la~~~~-~~i~v~~~~~  267 (319)
T 3frx_A          235 ------------------SAQ--DEVFSLAFSPNRYWLAAATA-TGIKVFSLDP  267 (319)
T ss_dssp             ------------------ECC--SCEEEEEECSSSSEEEEEET-TEEEEEEETT
T ss_pred             ------------------cCC--CcEEEEEEcCCCCEEEEEcC-CCcEEEEeCc
Confidence                              111  15999999999999888775 4699999876

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=7.3e-32  Score=299.56  Aligned_cols=233  Identities=15%  Similarity=0.272  Sum_probs=166.6

Q ss_pred             cCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCe-----------EEEEecccCC------------cceEEEEEecC
Q 004468           48 GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK-----------LLHSIETGHS------------ANVFCTKFVPE  104 (751)
Q Consensus        48 gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~-----------~~~~l~~~h~------------~~V~~v~fsp~  104 (751)
                      .|.+.|++|+|+|+|++||+|+.||.|+|||+.++.           ....+ .+|.            ..|.+++|+|+
T Consensus        26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~-~~h~~~~~~~~~~~~~~~V~~l~~~~~  104 (447)
T 3dw8_B           26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTF-QSHEPEFDYLKSLEIEEKINKIRWLPQ  104 (447)
T ss_dssp             CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEE-ECCCCEEEGGGTEEECCCCCEEEECCC
T ss_pred             cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEeccc-ccccccccccccccccCceEEEEEcCC
Confidence            478999999999999999999999999999998776           46666 7898            88999999999


Q ss_pred             CCCcEEEEEECCCcEEEEECCCCCCCC-----------------CCCCCC------------CCcee-ecccCCceeEEE
Q 004468          105 TSDELVVSGAGDAEVRLFNLSRFSGRG-----------------LDDNAI------------TPSAL-YQCHTRRVKKLA  154 (751)
Q Consensus       105 s~~~~l~sgs~Dg~V~vwd~~~~~~~~-----------------~~~~~~------------~~~~~-~~~h~~~V~~l~  154 (751)
                      .+..+|++++.|++|++||+.......                 ......            .+... ..+|...|.+++
T Consensus       105 ~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~  184 (447)
T 3dw8_B          105 KNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSIS  184 (447)
T ss_dssp             CSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEE
T ss_pred             CCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEE
Confidence            322799999999999999997521100                 000000            00112 468999999999


Q ss_pred             EecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEE
Q 004468          155 VEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVG  234 (751)
Q Consensus       155 ~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sg  234 (751)
                      |+| ++.+|++| .||+|++||++....+           ..++....      .....|...|++++|+|+++.+|++|
T Consensus       185 ~~~-~~~~l~s~-~d~~i~iwd~~~~~~~-----------~~~~~~~~------~~~~~~~~~v~~~~~~p~~~~~l~s~  245 (447)
T 3dw8_B          185 INS-DYETYLSA-DDLRINLWHLEITDRS-----------FNIVDIKP------ANMEELTEVITAAEFHPNSCNTFVYS  245 (447)
T ss_dssp             ECT-TSSEEEEE-CSSEEEEEETTEEEEE-----------EEEEECCC------SSGGGCCCCEEEEEECSSCTTEEEEE
T ss_pred             EcC-CCCEEEEe-CCCeEEEEECCCCCce-----------eeeeeccc------ccccccCcceEEEEECCCCCcEEEEE
Confidence            999 67899898 8999999999853211           11111110      11234677899999999644899999


Q ss_pred             eCCCeEEEEeCCCCCC----ccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004468          235 GSDAFARLYDRRMLPP----LTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (751)
Q Consensus       235 s~D~~IriwD~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~  310 (751)
                      +.|+.|++||+++.+.    +..+.....+ .....+       .+|. ..|++++|+|+|++|++++. +.|+|||+.+
T Consensus       246 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~-------~~~~-~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~  315 (447)
T 3dw8_B          246 SSKGTIRLCDMRASALCDRHSKLFEEPEDP-SNRSFF-------SEII-SSISDVKFSHSGRYMMTRDY-LSVKVWDLNM  315 (447)
T ss_dssp             ETTSCEEEEETTTCSSSCTTCEEECCC------CCHH-------HHHT-TCEEEEEECTTSSEEEEEES-SEEEEEETTC
T ss_pred             eCCCeEEEEECcCCccccceeeEeccCCCc-cccccc-------cccC-ceEEEEEECCCCCEEEEeeC-CeEEEEeCCC
Confidence            9999999999998764    2221110000 000000       0111 25999999999999999999 9999999986

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=1.7e-31  Score=298.71  Aligned_cols=227  Identities=19%  Similarity=0.349  Sum_probs=174.5

Q ss_pred             ccEEeccCCCcE-EEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEE
Q 004468           42 QERELEGHQGCV-NAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR  120 (751)
Q Consensus        42 ~~~~L~gH~~~V-~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~  120 (751)
                      ...+|.+|.+.| .++.|  ++++|++|+.||+|+|||+.+++.+..+ .+|.+.|.+++|+|+  + +|++|+.|++|+
T Consensus       113 ~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~-~~h~~~V~~l~~~~~--~-~l~s~s~dg~i~  186 (464)
T 3v7d_B          113 QRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQL-SGHDGGVWALKYAHG--G-ILVSGSTDRTVR  186 (464)
T ss_dssp             EEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEECST--T-EEEEEETTSCEE
T ss_pred             ceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEE-eCCCcCEEEEEEcCC--C-EEEEEeCCCCEE
Confidence            456899999885 66666  5789999999999999999999999999 799999999999988  4 999999999999


Q ss_pred             EEECCCCCCCCCCCCCCCCceeecccCCceeEEEEec-CCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEe
Q 004468          121 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEV-GNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD  199 (751)
Q Consensus       121 vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~  199 (751)
                      +||+.++          +++..+.+|...|.+++|++ .++.+|++|+.||+|++||+++............ . .....
T Consensus       187 vwd~~~~----------~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~-~-~~~~~  254 (464)
T 3v7d_B          187 VWDIKKG----------CCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHD-Y-PLVFH  254 (464)
T ss_dssp             EEETTTT----------EEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CC-S-SEEES
T ss_pred             EEECCCC----------cEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCC-c-ceEee
Confidence            9999864          55788999999999999996 2568999999999999999998764422111110 0 11111


Q ss_pred             cccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccc
Q 004468          200 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS  279 (751)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  279 (751)
                      ...+....+....+|...+.++.  + ++.++++|+.|+.|++||+++.+.+..+                    .+|..
T Consensus       255 ~~~~~~~~~~~~~~~~~~v~~~~--~-~~~~l~~~~~d~~i~vwd~~~~~~~~~~--------------------~~~~~  311 (464)
T 3v7d_B          255 TPEENPYFVGVLRGHMASVRTVS--G-HGNIVVSGSYDNTLIVWDVAQMKCLYIL--------------------SGHTD  311 (464)
T ss_dssp             CGGGCTTEEEEECCCSSCEEEEE--E-ETTEEEEEETTSCEEEEETTTTEEEEEE--------------------CCCSS
T ss_pred             ccCCCeEEEEEccCccceEEEEc--C-CCCEEEEEeCCCeEEEEECCCCcEEEEe--------------------cCCCC
Confidence            11111111222344666777764  4 3679999999999999999876543222                    23433


Q ss_pred             cceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004468          280 LHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (751)
Q Consensus       280 ~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~  310 (751)
                       .|++++|+|++++|++++.|+.|++||+.+
T Consensus       312 -~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~  341 (464)
T 3v7d_B          312 -RIYSTIYDHERKRCISASMDTTIRIWDLEN  341 (464)
T ss_dssp             -CEEEEEEETTTTEEEEEETTSCEEEEETTT
T ss_pred             -CEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Confidence             599999999999999999999999999876

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=2.2e-31  Score=291.05  Aligned_cols=255  Identities=13%  Similarity=0.190  Sum_probs=188.7

Q ss_pred             HHHhhhccCcCcc-----cccccccchhhhccccccEEeccCCCcEEEEEECC-CCCEEEEEeCCCcEEEEeCCCCeEEE
Q 004468           13 DMLDTRHTDTRPD-----VNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNS-KGSLLISGSDDTHINVWSYSSRKLLH   86 (751)
Q Consensus        13 ~~l~~r~~~~~~~-----~~~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~-dg~~LaSgs~Dg~I~IWd~~~~~~~~   86 (751)
                      .+|..|..+....     .+..++++..  ...+....+.+|.+.|++++|+| ++++||+|+.||.|+|||+.++....
T Consensus         3 ~~l~~r~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~   80 (408)
T 4a11_B            3 GFLSARQTGLEDPLRLRRAESTRRVLGL--ELNKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQS   80 (408)
T ss_dssp             HHHHHHHHTSSCHHHHHHHHHHHHHHTE--EECTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSS
T ss_pred             ccccccccCccCccceeeccCcceeecc--ccCcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccc
Confidence            4555665554321     2334445443  44456788899999999999999 99999999999999999998776544


Q ss_pred             Eec------------ccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEE
Q 004468           87 SIE------------TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLA  154 (751)
Q Consensus        87 ~l~------------~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  154 (751)
                      .+.            .+|...|.+++|+|+. +.+|++++.|+.|++||+...          +.+..+. +...+.++.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~s~~~d~~i~iwd~~~~----------~~~~~~~-~~~~~~~~~  148 (408)
T 4a11_B           81 YYTCKAVCSIGRDHPDVHRYSVETVQWYPHD-TGMFTSSSFDKTLKVWDTNTL----------QTADVFN-FEETVYSHH  148 (408)
T ss_dssp             CEEECEEEEECTTCTTCCSSCEEEEEECTTC-TTCEEEEETTSEEEEEETTTT----------EEEEEEE-CSSCEEEEE
T ss_pred             eEeccccccccccccccCCCcEEEEEEccCC-CcEEEEEeCCCeEEEeeCCCC----------ccceecc-CCCceeeeE
Confidence            431            2599999999999953 689999999999999999864          3344444 788899999


Q ss_pred             EecCC--CCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEE
Q 004468          155 VEVGN--PHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLL  232 (751)
Q Consensus       155 ~sp~~--~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~  232 (751)
                      |+|.+  +.++++++.||.|++||+++++..                         .....|...|.+++|+|++..+++
T Consensus       149 ~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-------------------------~~~~~~~~~v~~~~~~~~~~~ll~  203 (408)
T 4a11_B          149 MSPVSTKHCLVAVGTRGPKVQLCDLKSGSCS-------------------------HILQGHRQEILAVSWSPRYDYILA  203 (408)
T ss_dssp             ECSSCSSCCEEEEEESSSSEEEEESSSSCCC-------------------------EEECCCCSCEEEEEECSSCTTEEE
T ss_pred             eecCCCCCcEEEEEcCCCeEEEEeCCCccee-------------------------eeecCCCCcEEEEEECCCCCcEEE
Confidence            99853  348999999999999999886532                         111236678999999997555799


Q ss_pred             EEeCCCeEEEEeCCCCCC-ccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 004468          233 VGGSDAFARLYDRRMLPP-LTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (751)
Q Consensus       233 sgs~D~~IriwD~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~  311 (751)
                      +|+.|+.|++||+++... +..+.......     .........+|.. .|++++|+|+|++|++++.|+.|++||+.++
T Consensus       204 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~  277 (408)
T 4a11_B          204 TASADSRVKLWDVRRASGCLITLDQHNGKK-----SQAVESANTAHNG-KVNGLCFTSDGLHLLTVGTDNRMRLWNSSNG  277 (408)
T ss_dssp             EEETTSCEEEEETTCSSCCSEECCTTTTCS-----CCCTTTSSCSCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred             EEcCCCcEEEEECCCCCccccccccccccc-----ceeeccccccccC-ceeEEEEcCCCCEEEEecCCCeEEEEECCCC
Confidence            999999999999987652 22211100000     0000001123333 6999999999999999999999999999985


Q ss_pred             C
Q 004468          312 G  312 (751)
Q Consensus       312 ~  312 (751)
                      .
T Consensus       278 ~  278 (408)
T 4a11_B          278 E  278 (408)
T ss_dssp             C
T ss_pred             c
Confidence            4

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=1.1e-31  Score=289.95  Aligned_cols=225  Identities=17%  Similarity=0.214  Sum_probs=184.6

Q ss_pred             cccccccchhhhccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCC------eEEEEecccCCcceEEE
Q 004468           26 VNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSR------KLLHSIETGHSANVFCT   99 (751)
Q Consensus        26 ~~~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~------~~~~~l~~~h~~~V~~v   99 (751)
                      .+..+++|+..  +.+..+.+..|...|.+++|+|+|++||+|+.|+.++||++...      .....+ .+|.+.|.++
T Consensus        84 ~Dg~v~vWd~~--~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~-~~h~~~v~~~  160 (354)
T 2pbi_B           84 QDGKVIVWDSF--TTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSV-AMHTNYLSAC  160 (354)
T ss_dssp             TTSEEEEEETT--TCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEE-EECSSCEEEE
T ss_pred             CCCeEEEEECC--CCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccccccceee-eccCCcEEEE
Confidence            45677787643  44567788899999999999999999999999999999998643      233445 6899999999


Q ss_pred             EEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecC-CCCEEEEEeCCCcEEEEecC
Q 004468          100 KFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVG-NPHVVWSASEDGTLRQHDFR  178 (751)
Q Consensus       100 ~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~-~~~~l~s~s~Dg~I~iwDlr  178 (751)
                      +|+|+  +..|++|+.|++|++||+.++          +++..+.+|...|.+++|+|. ++.+|++|+.||+|++||++
T Consensus       161 ~~~~~--~~~l~t~s~D~~v~lwd~~~~----------~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~  228 (354)
T 2pbi_B          161 SFTNS--DMQILTASGDGTCALWDVESG----------QLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMR  228 (354)
T ss_dssp             EECSS--SSEEEEEETTSEEEEEETTTC----------CEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETT
T ss_pred             EEeCC--CCEEEEEeCCCcEEEEeCCCC----------eEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECC
Confidence            99999  789999999999999999864          557889999999999999884 35799999999999999999


Q ss_pred             CCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCC
Q 004468          179 QGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRM  258 (751)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~  258 (751)
                      +++..                         .....|...|++++|+|+ +.+|++|+.|++|++||++....+..+.   
T Consensus       229 ~~~~~-------------------------~~~~~h~~~v~~v~~~p~-~~~l~s~s~D~~v~lwd~~~~~~~~~~~---  279 (354)
T 2pbi_B          229 SGQCV-------------------------QAFETHESDVNSVRYYPS-GDAFASGSDDATCRLYDLRADREVAIYS---  279 (354)
T ss_dssp             TCCEE-------------------------EEECCCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTTEEEEEEC---
T ss_pred             CCcEE-------------------------EEecCCCCCeEEEEEeCC-CCEEEEEeCCCeEEEEECCCCcEEEEEc---
Confidence            87521                         112236778999999995 7899999999999999998754322110   


Q ss_pred             CCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004468          259 SPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (751)
Q Consensus       259 ~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~  310 (751)
                                .     . .....+++++|+|+|++|++++.|+.|+|||+.+
T Consensus       280 ----------~-----~-~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~  315 (354)
T 2pbi_B          280 ----------K-----E-SIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLK  315 (354)
T ss_dssp             ----------C-----T-TCCSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred             ----------C-----C-CcccceeEEEEeCCCCEEEEEECCCcEEEEECCC
Confidence                      0     0 1112589999999999999999999999999866

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=1.5e-31  Score=287.74  Aligned_cols=244  Identities=15%  Similarity=0.207  Sum_probs=186.8

Q ss_pred             ccccccccchhhhccccccE-EeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCC--eEEEEecccCCcceEEEEE
Q 004468           25 DVNHSLQMHSSLVRRLSQER-ELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSR--KLLHSIETGHSANVFCTKF  101 (751)
Q Consensus        25 ~~~~~l~~~~~~i~~~~~~~-~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~--~~~~~l~~~h~~~V~~v~f  101 (751)
                      ..+..+++|+....+..... .+.+|.+.|++|+|+|+|++||+|+.|++|+||++..+  +.+..+ .+|...|.+++|
T Consensus        35 ~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~-~~h~~~v~~v~~  113 (345)
T 3fm0_A           35 GGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTL-EGHENEVKSVAW  113 (345)
T ss_dssp             ETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEE-CCCSSCEEEEEE
T ss_pred             cCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEc-cCCCCCceEEEE
Confidence            35678888875544433333 34799999999999999999999999999999998766  356666 899999999999


Q ss_pred             ecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCC
Q 004468          102 VPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGS  181 (751)
Q Consensus       102 sp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~  181 (751)
                      +|+  +++|++|+.|++|++||+.....       ..++..+.+|...|.+++|+| ++.+|++++.|++|++||++.+.
T Consensus       114 sp~--~~~l~s~s~D~~v~iwd~~~~~~-------~~~~~~~~~h~~~v~~~~~~p-~~~~l~s~s~d~~i~~w~~~~~~  183 (345)
T 3fm0_A          114 APS--GNLLATCSRDKSVWVWEVDEEDE-------YECVSVLNSHTQDVKHVVWHP-SQELLASASYDDTVKLYREEEDD  183 (345)
T ss_dssp             CTT--SSEEEEEETTSCEEEEEECTTSC-------EEEEEEECCCCSCEEEEEECS-SSSCEEEEETTSCEEEEEEETTE
T ss_pred             eCC--CCEEEEEECCCeEEEEECCCCCC-------eEEEEEecCcCCCeEEEEECC-CCCEEEEEeCCCcEEEEEecCCC
Confidence            999  89999999999999999985421       134667889999999999999 66899999999999999987653


Q ss_pred             CCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCC--C
Q 004468          182 SCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRM--S  259 (751)
Q Consensus       182 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~--~  259 (751)
                      ..                       .+....+|...|++++|+|+ +.+|++|+.|++|+|||..............  .
T Consensus       184 ~~-----------------------~~~~~~~h~~~v~~l~~sp~-g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~  239 (345)
T 3fm0_A          184 WV-----------------------CCATLEGHESTVWSLAFDPS-GQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDP  239 (345)
T ss_dssp             EE-----------------------EEEEECCCSSCEEEEEECTT-SSEEEEEETTSCEEEEEEECTTCTTCCCCC---C
T ss_pred             EE-----------------------EEEEecCCCCceEEEEECCC-CCEEEEEeCCCeEEEeccccCCCCccceeeccCC
Confidence            10                       01122347788999999994 7999999999999999975432211110000  0


Q ss_pred             CCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004468          260 PPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (751)
Q Consensus       260 ~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~  310 (751)
                      ...|+..+       .+.....|++++|+|++..|++++.|+.|++|++..
T Consensus       240 ~~~~~~~~-------~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~  283 (345)
T 3fm0_A          240 SWKCICTL-------SGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDP  283 (345)
T ss_dssp             EEEEEEEE-------CSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECT
T ss_pred             ccceeEEe-------cCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCC
Confidence            00111111       121223699999999999999999999999999766

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=4e-32  Score=288.57  Aligned_cols=218  Identities=12%  Similarity=0.176  Sum_probs=167.3

Q ss_pred             EEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCe--EEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEE
Q 004468           44 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK--LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRL  121 (751)
Q Consensus        44 ~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~--~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~v  121 (751)
                      ..+.+|.+.|++++|+|+|++||||+.|++|+|||+.++.  .+..+ .+|.+.|.+++|+|..++++|+||+.|++|+|
T Consensus         7 ~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l-~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~i   85 (316)
T 3bg1_A            7 TVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADL-RGHEGPVWQVAWAHPMYGNILASCSYDRKVII   85 (316)
T ss_dssp             -------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEE-ECCSSCEEEEEECCGGGSSCEEEEETTSCEEE
T ss_pred             eecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEE-cCCCccEEEEEeCCCCCCCEEEEEECCCEEEE
Confidence            3578999999999999999999999999999999998764  45566 79999999999986422689999999999999


Q ss_pred             EECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCC-CCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEec
Q 004468          122 FNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGN-PHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDL  200 (751)
Q Consensus       122 wd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~  200 (751)
                      ||+..+..        .++..+.+|...|++++|+|++ +.+|++|+.||+|++||++.....                 
T Consensus        86 Wd~~~~~~--------~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~-----------------  140 (316)
T 3bg1_A           86 WREENGTW--------EKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQW-----------------  140 (316)
T ss_dssp             ECCSSSCC--------CEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCE-----------------
T ss_pred             EECCCCcc--------eEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCc-----------------
Confidence            99985321        3456788999999999999953 679999999999999999875311                 


Q ss_pred             ccCceecccCCCCCccceEEEEEeCCC----------------CcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCcc
Q 004468          201 RCGAKRSLADPPKQTLSLKSCDISSTR----------------PHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCV  264 (751)
Q Consensus       201 ~~~~~~~~~~~~~~~~~v~~i~~sp~~----------------~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~  264 (751)
                           ........|...|.+++|+|+.                +.+|++|+.|+.|++||++......          +.
T Consensus       141 -----~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~----------~~  205 (316)
T 3bg1_A          141 -----EVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWK----------EE  205 (316)
T ss_dssp             -----EECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEE----------EE
T ss_pred             -----ceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccc----------ee
Confidence                 0011223466678888888852                3689999999999999986432100          11


Q ss_pred             ccccccccccCCccccceEEEEEcCCC----CEEEEEeCCCcEEEEECCC
Q 004468          265 NYFCPMHLSEHGRSSLHLTHVTFSPNG----EEVLLSYSGEHVYLMDVNH  310 (751)
Q Consensus       265 ~~~~~~~~~~~g~~~~~vt~v~fspdg----~~Ll~~s~d~~I~lwdl~~  310 (751)
                      ..+       .+|.. .|++++|+|++    ++|++++.|++|+|||+.+
T Consensus       206 ~~l-------~~h~~-~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~  247 (316)
T 3bg1_A          206 QKL-------EAHSD-WVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDD  247 (316)
T ss_dssp             ECC-------BCCSS-CEEEEECCCCSSCSCCEEEEEETTCEEEEEECSS
T ss_pred             eec-------ccCCC-ceEEEEecCCCCCCCceEEEEcCCCeEEEEEccC
Confidence            111       34554 69999999987    8899999999999999876

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=2.7e-31  Score=295.79  Aligned_cols=203  Identities=23%  Similarity=0.386  Sum_probs=168.5

Q ss_pred             cccccEEeccCCCcE-EEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCC
Q 004468           39 RLSQERELEGHQGCV-NAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA  117 (751)
Q Consensus        39 ~~~~~~~L~gH~~~V-~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg  117 (751)
                      +.+..+.|.+|.+.| .++.  ++|++|++|+.||+|+|||+.+++.+..+ .+|.+.|.+++|+    +.+|++|+.|+
T Consensus       107 ~~~~~~~l~~h~~~v~~~~~--~~g~~l~sg~~dg~i~vwd~~~~~~~~~~-~~h~~~v~~~~~~----~~~l~s~~~dg  179 (445)
T 2ovr_B          107 ELKSPKVLKGHDDHVITCLQ--FCGNRIVSGSDDNTLKVWSAVTGKCLRTL-VGHTGGVWSSQMR----DNIIISGSTDR  179 (445)
T ss_dssp             CCCCCEEEECSTTSCEEEEE--EETTEEEEEETTSCEEEEETTTCCEEEEC-CCCSSCEEEEEEE----TTEEEEEETTS
T ss_pred             CcceeEEecccCCCcEEEEE--EcCCEEEEEECCCcEEEEECCCCcEEEEE-cCCCCCEEEEEec----CCEEEEEeCCC
Confidence            345678899999975 5554  46899999999999999999999999988 7999999999997    35999999999


Q ss_pred             cEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEE
Q 004468          118 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNIL  197 (751)
Q Consensus       118 ~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l  197 (751)
                      +|++||+.++          +++..+.+|...|.+++|++   ..+++|+.||+|++||+++++..           .  
T Consensus       180 ~i~vwd~~~~----------~~~~~~~~h~~~v~~~~~~~---~~l~s~s~dg~i~~wd~~~~~~~-----------~--  233 (445)
T 2ovr_B          180 TLKVWNAETG----------ECIHTLYGHTSTVRCMHLHE---KRVVSGSRDATLRVWDIETGQCL-----------H--  233 (445)
T ss_dssp             CEEEEETTTT----------EEEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEESSSCCEE-----------E--
T ss_pred             eEEEEECCcC----------cEEEEECCCCCcEEEEEecC---CEEEEEeCCCEEEEEECCCCcEE-----------E--
Confidence            9999999864          55788899999999999964   67999999999999999876521           1  


Q ss_pred             EecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCc
Q 004468          198 LDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGR  277 (751)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  277 (751)
                                  ....|...|.+++|   ++.++++|+.|+.|++||+++.+.+..+                    .+|
T Consensus       234 ------------~~~~~~~~v~~~~~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~--------------------~~~  278 (445)
T 2ovr_B          234 ------------VLMGHVAAVRCVQY---DGRRVVSGAYDFMVKVWDPETETCLHTL--------------------QGH  278 (445)
T ss_dssp             ------------EEECCSSCEEEEEE---CSSCEEEEETTSCEEEEEGGGTEEEEEE--------------------CCC
T ss_pred             ------------EEcCCcccEEEEEE---CCCEEEEEcCCCEEEEEECCCCcEeEEe--------------------cCC
Confidence                        11236678999999   3578999999999999999876533222                    233


Q ss_pred             cccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCC
Q 004468          278 SSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG  312 (751)
Q Consensus       278 ~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~  312 (751)
                      .. .|+++.|  ++.+|++++.|+.|++||+.++.
T Consensus       279 ~~-~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~  310 (445)
T 2ovr_B          279 TN-RVYSLQF--DGIHVVSGSLDTSIRVWDVETGN  310 (445)
T ss_dssp             SS-CEEEEEE--CSSEEEEEETTSCEEEEETTTCC
T ss_pred             CC-ceEEEEE--CCCEEEEEeCCCeEEEEECCCCC
Confidence            33 5999999  89999999999999999999864

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=1e-31  Score=310.71  Aligned_cols=136  Identities=16%  Similarity=0.141  Sum_probs=120.2

Q ss_pred             ccccchhhhccccccEEeccCCCcEEEEEECCCCC-EEEEEeCCCcEEEEeCCCCeEEEEecccCCc---ceEEEEEecC
Q 004468           29 SLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGS-LLISGSDDTHINVWSYSSRKLLHSIETGHSA---NVFCTKFVPE  104 (751)
Q Consensus        29 ~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~-~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~---~V~~v~fsp~  104 (751)
                      .+.+|+    ..+....+.+|.+.|++++|+|+++ +|++|+.|+.|+|||+.+++.+..+ .+|..   .|.+++|+|+
T Consensus       143 ~v~~~d----~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~-~~~~~~~~~v~~~~~~~~  217 (615)
T 1pgu_A          143 VFISWD----SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASD-RTHHKQGSFVRDVEFSPD  217 (615)
T ss_dssp             EEEETT----TCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEE-CSSSCTTCCEEEEEECST
T ss_pred             EEEEEE----CCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeee-cccCCCCceEEEEEECCC
Confidence            455555    3457788999999999999999998 8999999999999999999999988 78999   9999999998


Q ss_pred             CCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceee-c---ccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCC
Q 004468          105 TSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALY-Q---CHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQG  180 (751)
Q Consensus       105 s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~-~---~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~  180 (751)
                      . +++|++++.|+.|++||+..+          +++..+ .   .|...|.+++|+  ++.+|++++.||+|++||++++
T Consensus       218 ~-~~~l~~~~~dg~i~vwd~~~~----------~~~~~~~~~~~~~~~~v~~~~~~--~~~~l~~~~~d~~i~~wd~~~~  284 (615)
T 1pgu_A          218 S-GEFVITVGSDRKISCFDGKSG----------EFLKYIEDDQEPVQGGIFALSWL--DSQKFATVGADATIRVWDVTTS  284 (615)
T ss_dssp             T-CCEEEEEETTCCEEEEETTTC----------CEEEECCBTTBCCCSCEEEEEES--SSSEEEEEETTSEEEEEETTTT
T ss_pred             C-CCEEEEEeCCCeEEEEECCCC----------CEeEEecccccccCCceEEEEEc--CCCEEEEEcCCCcEEEEECCCC
Confidence            4 589999999999999999864          446666 5   899999999999  6689999999999999999987


Q ss_pred             CC
Q 004468          181 SS  182 (751)
Q Consensus       181 ~~  182 (751)
                      +.
T Consensus       285 ~~  286 (615)
T 1pgu_A          285 KC  286 (615)
T ss_dssp             EE
T ss_pred             cE
Confidence            54

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=2.6e-32  Score=297.91  Aligned_cols=232  Identities=20%  Similarity=0.292  Sum_probs=185.4

Q ss_pred             cccccccchhhhccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCe-------EEEEecccCCcceEE
Q 004468           26 VNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK-------LLHSIETGHSANVFC   98 (751)
Q Consensus        26 ~~~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~-------~~~~l~~~h~~~V~~   98 (751)
                      .+..+++|+.  .+.+..+++.+|...|.+++|+|+|++||+|+.|+.|+|||+.+..       ....+ .+|.+.|.+
T Consensus        86 ~D~~v~iWd~--~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~-~gh~~~v~~  162 (380)
T 3iz6_a           86 QDGRLIVWNA--LTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVL-TGHKGYASS  162 (380)
T ss_dssp             TTSEEEEEET--TTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBC-CCCSSCCCC
T ss_pred             CCCeEEEEEC--CCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeec-cCCCcceEE
Confidence            4677888874  3456788999999999999999999999999999999999986432       22334 799999999


Q ss_pred             EEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceee-----cccCCceeEEEEecCCCCEEEEEeCCCcEE
Q 004468           99 TKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALY-----QCHTRRVKKLAVEVGNPHVVWSASEDGTLR  173 (751)
Q Consensus        99 v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~-----~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~  173 (751)
                      +.|+|+. +..|++|+.|++|++||+.++          +++..+     .+|...|.+++|++.++.+|++|+.||+|+
T Consensus       163 ~~~~~~~-~~~l~s~s~D~~i~~wd~~~~----------~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~  231 (380)
T 3iz6_a          163 CQYVPDQ-ETRLITGSGDQTCVLWDVTTG----------QRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVR  231 (380)
T ss_dssp             CBCCSSS-SSCEEEECTTSCEEEECTTTC----------CEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEE
T ss_pred             EEEecCC-CCEEEEECCCCcEEEEEcCCC----------cEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEE
Confidence            9999985 578999999999999999865          334444     679999999999887889999999999999


Q ss_pred             EEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccc
Q 004468          174 QHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTS  253 (751)
Q Consensus       174 iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~  253 (751)
                      +||++....+                        +....+|...|++++|+| ++.+|++|+.|++|++||++++..+..
T Consensus       232 ~wd~~~~~~~------------------------~~~~~~h~~~v~~v~~~p-~~~~l~s~s~D~~i~lwd~~~~~~~~~  286 (380)
T 3iz6_a          232 LWDLRITSRA------------------------VRTYHGHEGDINSVKFFP-DGQRFGTGSDDGTCRLFDMRTGHQLQV  286 (380)
T ss_dssp             EEETTTTCCC------------------------CEEECCCSSCCCEEEECT-TSSEEEEECSSSCEEEEETTTTEEEEE
T ss_pred             EEECCCCCcc------------------------eEEECCcCCCeEEEEEec-CCCeEEEEcCCCeEEEEECCCCcEEEE
Confidence            9999854321                        112234778899999999 479999999999999999998764433


Q ss_pred             cCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004468          254 CQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (751)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~  310 (751)
                      +...             ......+ ...|++++|+|+|++|++|+.|+.|++||+..
T Consensus       287 ~~~~-------------~~~~~~~-~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~  329 (380)
T 3iz6_a          287 YNRE-------------PDRNDNE-LPIVTSVAFSISGRLLFAGYSNGDCYVWDTLL  329 (380)
T ss_dssp             ECCC-------------CSSSCCS-SCSCSEEEECSSSSEEEEECTTSCEEEEETTT
T ss_pred             eccc-------------ccccccc-cCceEEEEECCCCCEEEEEECCCCEEEEECCC
Confidence            2111             0000011 12489999999999999999999999999876

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.4e-31  Score=284.42  Aligned_cols=239  Identities=18%  Similarity=0.207  Sum_probs=178.1

Q ss_pred             cccccccchhhhccccccEEe-cc-CCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCC-------CeEEEEecccCCcce
Q 004468           26 VNHSLQMHSSLVRRLSQEREL-EG-HQGCVNAISWNSKGSLLISGSDDTHINVWSYSS-------RKLLHSIETGHSANV   96 (751)
Q Consensus        26 ~~~~l~~~~~~i~~~~~~~~L-~g-H~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~-------~~~~~~l~~~h~~~V   96 (751)
                      .+..+++|+......++..++ .+ |.+.|++|+|+|++++||+|+.|++|+|||+..       ...+..+ .+|...|
T Consensus        32 ~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~-~~h~~~V  110 (330)
T 2hes_X           32 TDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAII-EGHENEV  110 (330)
T ss_dssp             SSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEE-C----CE
T ss_pred             CCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEE-cCCCCcE
Confidence            467788887654445566677 45 999999999999999999999999999999842       3455666 7999999


Q ss_pred             EEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEe
Q 004468           97 FCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHD  176 (751)
Q Consensus        97 ~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwD  176 (751)
                      .+++|+|+  +++|++|+.|++|+|||+......      .+++..+.+|...|.+++|+| ++.+|++|+.|++|++||
T Consensus       111 ~~v~~sp~--g~~las~s~D~~v~iwd~~~~~~~------~~~~~~~~~h~~~v~~v~~~p-~~~~l~s~s~D~~i~iW~  181 (330)
T 2hes_X          111 KGVAWSND--GYYLATCSRDKSVWIWETDESGEE------YECISVLQEHSQDVKHVIWHP-SEALLASSSYDDTVRIWK  181 (330)
T ss_dssp             EEEEECTT--SCEEEEEETTSCEEEEECCTTCCC------CEEEEEECCCSSCEEEEEECS-SSSEEEEEETTSCEEEEE
T ss_pred             EEEEECCC--CCEEEEEeCCCEEEEEeccCCCCC------eEEEEEeccCCCceEEEEECC-CCCEEEEEcCCCeEEEEE
Confidence            99999999  899999999999999999532111      145678899999999999999 678999999999999999


Q ss_pred             cCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCC-CcEEEEEeCCCeEEEEeCCCCCCccccC
Q 004468          177 FRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR-PHLLLVGGSDAFARLYDRRMLPPLTSCQ  255 (751)
Q Consensus       177 lr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~-~~~l~sgs~D~~IriwD~~~~~~~~~~~  255 (751)
                      ++++..         .              .+....+|...|.+++|+|+. +.+|++|+.|++|++||++........ 
T Consensus       182 ~~~~~~---------~--------------~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~-  237 (330)
T 2hes_X          182 DYDDDW---------E--------------CVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQ-  237 (330)
T ss_dssp             EETTEE---------E--------------EEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCE-
T ss_pred             CCCCCe---------e--------------EEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccc-
Confidence            876420         0              112223477889999999953 468999999999999998754211000 


Q ss_pred             CCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004468          256 KRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (751)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~  310 (751)
                          ...+...+      ...|.. .|++++|++++ +|++++.|+.|+|||+.+
T Consensus       238 ----~~~~~~~~------~~~h~~-~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~  280 (330)
T 2hes_X          238 ----EWVCEAIL------PDVHKR-QVYNVAWGFNG-LIASVGADGVLAVYEEVD  280 (330)
T ss_dssp             ----EEEEEEEC------CSCCSS-CEEEEEECTTS-CEEEEETTSCEEEEEEET
T ss_pred             ----eeEEeeec------cccccc-ceEEEEEcCCC-EEEEEeCCCEEEEEEcCC
Confidence                00011111      011333 69999999765 799999999999999654

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=4.4e-31  Score=305.43  Aligned_cols=250  Identities=13%  Similarity=0.131  Sum_probs=197.5

Q ss_pred             cccccccchhhhc------cccccEEeccCCCcEEEEEECCCCCEEEEEeCC----CcEEEEeCCCCeEEEEecccCCcc
Q 004468           26 VNHSLQMHSSLVR------RLSQERELEGHQGCVNAISWNSKGSLLISGSDD----THINVWSYSSRKLLHSIETGHSAN   95 (751)
Q Consensus        26 ~~~~l~~~~~~i~------~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~D----g~I~IWd~~~~~~~~~l~~~h~~~   95 (751)
                      .+..+++|+....      ..++.+.+.+|.+.|.+++|+|+|++|++++.|    +.|.+||  .++.+..+ .+|...
T Consensus        86 ~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~-~~~~~~  162 (615)
T 1pgu_A           86 ESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEV-SGHSQR  162 (615)
T ss_dssp             TTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEEC-CSCSSC
T ss_pred             CCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceee-ecCCcc
Confidence            3667888876544      557788999999999999999999999999988    6888888  56677777 799999


Q ss_pred             eEEEEEecCCCCc-EEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCC---ceeEEEEecCCCCEEEEEeCCCc
Q 004468           96 VFCTKFVPETSDE-LVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTR---RVKKLAVEVGNPHVVWSASEDGT  171 (751)
Q Consensus        96 V~~v~fsp~s~~~-~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~---~V~~l~~sp~~~~~l~s~s~Dg~  171 (751)
                      |.+++|+|+  +. +|++++.|+.|++||+...          +++..+.+|..   .|.+++|+|+++.+|++++.||.
T Consensus       163 v~~~~~~~~--~~~~l~~~~~d~~v~vwd~~~~----------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~  230 (615)
T 1pgu_A          163 INACHLKQS--RPMRSMTVGDDGSVVFYQGPPF----------KFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRK  230 (615)
T ss_dssp             EEEEEECSS--SSCEEEEEETTTEEEEEETTTB----------EEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCC
T ss_pred             EEEEEECCC--CCcEEEEEeCCCcEEEEeCCCc----------ceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCe
Confidence            999999999  55 8999999999999998864          55778889999   99999999943789999999999


Q ss_pred             EEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCc
Q 004468          172 LRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPL  251 (751)
Q Consensus       172 I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~  251 (751)
                      |++||+++++..              ..+.       .....|...|.+++|+  ++.+|++++.|+.|++||+++.+.+
T Consensus       231 i~vwd~~~~~~~--------------~~~~-------~~~~~~~~~v~~~~~~--~~~~l~~~~~d~~i~~wd~~~~~~~  287 (615)
T 1pgu_A          231 ISCFDGKSGEFL--------------KYIE-------DDQEPVQGGIFALSWL--DSQKFATVGADATIRVWDVTTSKCV  287 (615)
T ss_dssp             EEEEETTTCCEE--------------EECC-------BTTBCCCSCEEEEEES--SSSEEEEEETTSEEEEEETTTTEEE
T ss_pred             EEEEECCCCCEe--------------EEec-------ccccccCCceEEEEEc--CCCEEEEEcCCCcEEEEECCCCcEE
Confidence            999999886522              1100       0001367789999999  5799999999999999999876543


Q ss_pred             cccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcceeeeecCCCceeEEeCC
Q 004468          252 TSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTP  331 (751)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp  331 (751)
                      ..+...              .   ......+.++.|+ ++++|++++.|+.|++||+.++........+...+..++| |
T Consensus       288 ~~~~~~--------------~---~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~  348 (615)
T 1pgu_A          288 QKWTLD--------------K---QQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV-N  348 (615)
T ss_dssp             EEEECC--------------T---TCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-T
T ss_pred             EEEcCC--------------C---CcccCceeEEEeC-CCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-c
Confidence            332110              0   0111247888886 9999999999999999999986555555556666777777 6


Q ss_pred             C
Q 004468          332 T  332 (751)
Q Consensus       332 ~  332 (751)
                      +
T Consensus       349 ~  349 (615)
T 1pgu_A          349 P  349 (615)
T ss_dssp             T
T ss_pred             C
Confidence            5

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.7e-31  Score=319.57  Aligned_cols=298  Identities=10%  Similarity=0.020  Sum_probs=193.6

Q ss_pred             cccccccchhhhccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEE----------EecccCCcc
Q 004468           26 VNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLH----------SIETGHSAN   95 (751)
Q Consensus        26 ~~~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~----------~l~~~h~~~   95 (751)
                      .+..+++|+..  +.++++++. |.+.|++++|+|++++|++|+.||+|+|||+.+++...          ....+|.+.
T Consensus        77 ~D~~v~lWd~~--~~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~  153 (902)
T 2oaj_A           77 AKDTVYVLSLY--SQKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSP  153 (902)
T ss_dssp             TTCEEEEEETT--TCSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCC
T ss_pred             CcCeEEEEECC--CCcEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCC
Confidence            46778888743  445667775 77899999999999999999999999999999887541          112679999


Q ss_pred             eEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecc------------------cCCceeEEEEec
Q 004468           96 VFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQC------------------HTRRVKKLAVEV  157 (751)
Q Consensus        96 V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~------------------h~~~V~~l~~sp  157 (751)
                      |.+++|+|+. +.+|++|+.|+.| |||+...          +++..+..                  |...|.+++|+|
T Consensus       154 V~sl~~sp~~-~~~l~~g~~dg~v-lWd~~~~----------~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fsp  221 (902)
T 2oaj_A          154 IVSIQWNPRD-IGTVLISYEYVTL-TYSLVEN----------EIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHP  221 (902)
T ss_dssp             CCEEEEETTE-EEEEEEECSSCEE-EEETTTT----------EEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECT
T ss_pred             eEEEEEccCC-CCEEEEEeCCCcE-EEECCCC----------ceEEEEecccCCcCCCcccccccccccCCCeEEEEEcC
Confidence            9999999973 4789999999999 9999864          23444443                  468899999999


Q ss_pred             CCCCEEEEEeCCCcEEEEecCCCCCCCC--CC--C-C------------CC-ccceEEEecc----------cC------
Q 004468          158 GNPHVVWSASEDGTLRQHDFRQGSSCPP--AG--S-S------------HQ-ECRNILLDLR----------CG------  203 (751)
Q Consensus       158 ~~~~~l~s~s~Dg~I~iwDlr~~~~~~~--~~--~-~------------~~-~~~~~l~~~~----------~~------  203 (751)
                       ++.+|++|+.||+|++||+++++....  ..  . .            +. ....+.|...          .+      
T Consensus       222 -dg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~  300 (902)
T 2oaj_A          222 -NSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRG  300 (902)
T ss_dssp             -TSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTS
T ss_pred             -CCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCC
Confidence             678999999999999999998764321  00  0 0            01 1111222100          00      


Q ss_pred             ---ceecccC---------------------------CCCCccceEEEEEeC---------CCCcEEEEEeCCCeEEEEe
Q 004468          204 ---AKRSLAD---------------------------PPKQTLSLKSCDISS---------TRPHLLLVGGSDAFARLYD  244 (751)
Q Consensus       204 ---~~~~~~~---------------------------~~~~~~~v~~i~~sp---------~~~~~l~sgs~D~~IriwD  244 (751)
                         ....+..                           ...+...|.++.+.+         .++..+++++.|+.|++||
T Consensus       301 ~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~  380 (902)
T 2oaj_A          301 DNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETML  380 (902)
T ss_dssp             SCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEE
T ss_pred             CCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEE
Confidence               0000000                           001234566666654         1345788888899999999


Q ss_pred             CCCCCCccc-------cCCCCCCCCcccccc---------------ccccccCCccccceEEEEEcCCCCEEEEEeCCCc
Q 004468          245 RRMLPPLTS-------CQKRMSPPPCVNYFC---------------PMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEH  302 (751)
Q Consensus       245 ~~~~~~~~~-------~~~~~~~~~~~~~~~---------------~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~  302 (751)
                      +.++.....       +.....+..++. +.               .......||.. .+.+++|+|+|++|++++.|++
T Consensus       381 ~~~g~~~~~~~~~~~~l~~~~~~v~~~~-~s~~~~~~w~~~~~~~~~~~~~l~G~~~-~v~sv~~spdg~~laSgs~Dgt  458 (902)
T 2oaj_A          381 YPSGIFTDKASLFPQNLSWLRPLATTSM-AASVPNKLWLGALSAAQNKDYLLKGGVR-TKRQKLPAEYGTAFITGHSNGS  458 (902)
T ss_dssp             TTTCCEECCGGGSCGGGTTBTTBEEEEE-EEEEEHHHHHHHHHTTBCCCCSCCCSBC-CCCCCCCCSEEEEEEEEETTSE
T ss_pred             CCCCCcccccccCCCcccccCCCeeEEE-EEEcCHHHHHHHHhcccCCCCcccCCcC-CCCcccccccCcEEEEecCCCc
Confidence            865532211       000000000000 00               00001133443 4677889999999999999999


Q ss_pred             EEEEECCCCCcce--eee---------ecCCCceeEEeCCCCCCcccCCC
Q 004468          303 VYLMDVNHAGGRA--MRY---------TVGDASKIMSFTPTLNGLELQPP  341 (751)
Q Consensus       303 I~lwdl~~~~~~~--~~~---------~~~~~~~~~~~sp~~~~~~~~~~  341 (751)
                      |++||+.++....  ...         .+...+..++|+|+...++....
T Consensus       459 VrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~  508 (902)
T 2oaj_A          459 VRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIE  508 (902)
T ss_dssp             EEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEET
T ss_pred             EEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEec
Confidence            9999999864221  111         34567888999998776655543

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=6.2e-31  Score=276.74  Aligned_cols=169  Identities=12%  Similarity=0.115  Sum_probs=134.8

Q ss_pred             ccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecC-CCCEEEEEeC
Q 004468           90 TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVG-NPHVVWSASE  168 (751)
Q Consensus        90 ~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~-~~~~l~s~s~  168 (751)
                      .+|.+.|.+++|+|+  +++|+||+.|++|+|||+.....        +++.++.+|.+.|.+++|+|. ++.+|+||+.
T Consensus         6 ~~h~~~V~~~~~s~~--g~~las~s~D~~v~iw~~~~~~~--------~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~   75 (297)
T 2pm7_B            6 NAHNEMIHDAVMDYY--GKRMATCSSDKTIKIFEVEGETH--------KLIDTLTGHEGPVWRVDWAHPKFGTILASCSY   75 (297)
T ss_dssp             CSCSSCEEEEEECTT--SSEEEEEETTSCEEEEEBCSSCB--------CCCEEECCCSSCEEEEEECCGGGCSEEEEEET
T ss_pred             cCCcCceEEEEECCC--CCEEEEEeCCCEEEEEecCCCCc--------EEEEEEccccCCeEEEEecCCCcCCEEEEEcC
Confidence            799999999999999  89999999999999999974322        457889999999999999863 4789999999


Q ss_pred             CCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCC-CcEEEEEeCCCeEEEEeCCC
Q 004468          169 DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR-PHLLLVGGSDAFARLYDRRM  247 (751)
Q Consensus       169 Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~-~~~l~sgs~D~~IriwD~~~  247 (751)
                      ||+|++||++++....                       +.....|...|.+++|+|+. +.+|++|+.|+.|++||++.
T Consensus        76 D~~v~iWd~~~~~~~~-----------------------~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~  132 (297)
T 2pm7_B           76 DGKVMIWKEENGRWSQ-----------------------IAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKE  132 (297)
T ss_dssp             TTEEEEEEBSSSCBCC-----------------------CEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCS
T ss_pred             CCEEEEEEcCCCceEE-----------------------EEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecC
Confidence            9999999998754110                       11112366789999999952 68999999999999999986


Q ss_pred             CCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCC-------------CCEEEEEeCCCcEEEEECCC
Q 004468          248 LPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPN-------------GEEVLLSYSGEHVYLMDVNH  310 (751)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspd-------------g~~Ll~~s~d~~I~lwdl~~  310 (751)
                      .....           ...+       .+|.. .|++++|+|+             +++|++++.|+.|+|||+.+
T Consensus       133 ~~~~~-----------~~~~-------~~h~~-~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~  189 (297)
T 2pm7_B          133 NGTTS-----------PIII-------DAHAI-GVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNS  189 (297)
T ss_dssp             SSCBC-----------CEEE-------ECCSS-CEEEEEECCCC------------CCEEEEEETTSCEEEEEEET
T ss_pred             CCcee-----------eeee-------ecccC-ccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcC
Confidence            42110           0001       23443 5999999997             57999999999999999766

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=4.8e-31  Score=289.79  Aligned_cols=203  Identities=19%  Similarity=0.285  Sum_probs=163.1

Q ss_pred             eccCCCc--EEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEE
Q 004468           46 LEGHQGC--VNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFN  123 (751)
Q Consensus        46 L~gH~~~--V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd  123 (751)
                      ..+|.+.  ++++.|++  ..|++++.|+.|+|||+.+++....+...|...|.+++|+|+  +.+|++|+.||.|++||
T Consensus        87 ~~~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~--~~~l~~~~~dg~i~iwd  162 (401)
T 4aez_A           87 APGIIDDYYLNLLDWSN--LNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHD--GSFLSVGLGNGLVDIYD  162 (401)
T ss_dssp             CTTCCCCTTCBCEEECT--TSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTT--SSEEEEEETTSCEEEEE
T ss_pred             CCCCcCCceEEEEeecC--CCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCC--CCEEEEECCCCeEEEEE
Confidence            3477765  55567764  568889999999999999999888875669999999999998  89999999999999999


Q ss_pred             CCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccC
Q 004468          124 LSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCG  203 (751)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~  203 (751)
                      +...          +.+..+.+|...|.+++|+   +++|++++.||.|++||++.....                    
T Consensus       163 ~~~~----------~~~~~~~~~~~~v~~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~--------------------  209 (401)
T 4aez_A          163 VESQ----------TKLRTMAGHQARVGCLSWN---RHVLSSGSRSGAIHHHDVRIANHQ--------------------  209 (401)
T ss_dssp             TTTC----------CEEEEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEETTSSSCE--------------------
T ss_pred             CcCC----------eEEEEecCCCCceEEEEEC---CCEEEEEcCCCCEEEEecccCcce--------------------
Confidence            9864          5578888999999999995   369999999999999999854311                    


Q ss_pred             ceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceE
Q 004468          204 AKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLT  283 (751)
Q Consensus       204 ~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt  283 (751)
                          +.....|...|.+++|+| ++.+|++|+.|+.|++||+++.+.+..+                    .+|.. .|+
T Consensus       210 ----~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~v~iwd~~~~~~~~~~--------------------~~~~~-~v~  263 (401)
T 4aez_A          210 ----IGTLQGHSSEVCGLAWRS-DGLQLASGGNDNVVQIWDARSSIPKFTK--------------------TNHNA-AVK  263 (401)
T ss_dssp             ----EEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTCSSEEEEE--------------------CCCSS-CCC
T ss_pred             ----eeEEcCCCCCeeEEEEcC-CCCEEEEEeCCCeEEEccCCCCCccEEe--------------------cCCcc-eEE
Confidence                111123677899999999 5899999999999999999875533221                    12333 599


Q ss_pred             EEEEcCCCCEEEEE-e--CCCcEEEEECCCC
Q 004468          284 HVTFSPNGEEVLLS-Y--SGEHVYLMDVNHA  311 (751)
Q Consensus       284 ~v~fspdg~~Ll~~-s--~d~~I~lwdl~~~  311 (751)
                      +++|+|++..+++. +  .|+.|++||+.++
T Consensus       264 ~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~  294 (401)
T 4aez_A          264 AVAWCPWQSNLLATGGGTMDKQIHFWNAATG  294 (401)
T ss_dssp             EEEECTTSTTEEEEECCTTTCEEEEEETTTC
T ss_pred             EEEECCCCCCEEEEecCCCCCEEEEEECCCC
Confidence            99999988655554 3  5999999998773

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.98  E-value=2.2e-30  Score=275.57  Aligned_cols=236  Identities=13%  Similarity=0.127  Sum_probs=180.3

Q ss_pred             cEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCC----eEEEEecccCCcceEEEEEecCCCCcEEEEEECCCc
Q 004468           43 ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSR----KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAE  118 (751)
Q Consensus        43 ~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~----~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~  118 (751)
                      .+.+.+|++.|++|+|+|+|++||+|+.||.|+|||+.++    +.+..+ .+|...|.+++|+|..++.+|++|+.|+.
T Consensus         4 ~~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~d~~~l~s~~~dg~   82 (351)
T 3f3f_A            4 QPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSW-RAHDSSIVAIDWASPEYGRIIASASYDKT   82 (351)
T ss_dssp             CCEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEE-ECCSSCEEEEEECCGGGCSEEEEEETTSC
T ss_pred             cccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceeccee-ccCCCcEEEEEEcCCCCCCEEEEEcCCCe
Confidence            4567899999999999999999999999999999999866    455566 78999999999999422789999999999


Q ss_pred             EEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCC-CCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEE
Q 004468          119 VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGN-PHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNIL  197 (751)
Q Consensus       119 V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l  197 (751)
                      |++||+........ ....+++..+..|...|.+++|+|+. +.+|++++.||+|++||+++++.......     ....
T Consensus        83 v~vwd~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~-----~~~~  156 (351)
T 3f3f_A           83 VKLWEEDPDQEECS-GRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTL-----TSEM  156 (351)
T ss_dssp             EEEEEECTTSCTTS-SCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEE-----EEEE
T ss_pred             EEEEecCCCccccc-ccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccc-----cccc
Confidence            99999986532110 11113467788999999999999942 78999999999999999998774421110     0000


Q ss_pred             EecccCceecccCCCCCccceEEEEEeCC--CCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccC
Q 004468          198 LDLRCGAKRSLADPPKQTLSLKSCDISST--RPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEH  275 (751)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~v~~i~~sp~--~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (751)
                      .       ........+...+.+++|+|+  ++.++++++.|+.+.+|+....+..           ....+       .
T Consensus       157 ~-------~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~-----------~~~~~-------~  211 (351)
T 3f3f_A          157 K-------VLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLH-----------VAAKL-------P  211 (351)
T ss_dssp             E-------SCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEE-----------EEEEC-------C
T ss_pred             c-------ccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCcee-----------eeeec-------C
Confidence            0       001112246678999999995  4789999999999988887654321           01111       2


Q ss_pred             CccccceEEEEEcCCC----CEEEEEeCCCcEEEEECCCC
Q 004468          276 GRSSLHLTHVTFSPNG----EEVLLSYSGEHVYLMDVNHA  311 (751)
Q Consensus       276 g~~~~~vt~v~fspdg----~~Ll~~s~d~~I~lwdl~~~  311 (751)
                      +|.. .|++++|+|++    ++|++++.|+.|++||+..+
T Consensus       212 ~h~~-~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~  250 (351)
T 3f3f_A          212 GHKS-LIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEK  250 (351)
T ss_dssp             CCCS-CEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEEC
T ss_pred             CCCc-ceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCC
Confidence            3443 69999999998    89999999999999999874

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.98  E-value=2.7e-30  Score=283.24  Aligned_cols=217  Identities=20%  Similarity=0.335  Sum_probs=167.5

Q ss_pred             cEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCC
Q 004468           52 CVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRG  131 (751)
Q Consensus        52 ~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~  131 (751)
                      .|++++|+|+|++||+|+.|++|+|||+.+++.+..+ .+|...|.+++|+|+  +.+|++|+.|++|++||+.++    
T Consensus       125 ~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~-~~h~~~v~~~~~~p~--~~~l~s~s~d~~v~iwd~~~~----  197 (393)
T 1erj_A          125 YIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMIL-QGHEQDIYSLDYFPS--GDKLVSGSGDRTVRIWDLRTG----  197 (393)
T ss_dssp             BEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEECTT--SSEEEEEETTSEEEEEETTTT----
T ss_pred             eEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEE-ccCCCCEEEEEEcCC--CCEEEEecCCCcEEEEECCCC----
Confidence            4999999999999999999999999999999998888 899999999999999  799999999999999999864    


Q ss_pred             CCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCC
Q 004468          132 LDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADP  211 (751)
Q Consensus       132 ~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  211 (751)
                            ++...+. +...|.+++|+|.++.+|++|+.||+|++||++++....           .+   ..    .....
T Consensus       198 ------~~~~~~~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~-----------~~---~~----~~~~~  252 (393)
T 1erj_A          198 ------QCSLTLS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVE-----------RL---DS----ENESG  252 (393)
T ss_dssp             ------EEEEEEE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEE-----------EE---C----------
T ss_pred             ------eeEEEEE-cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEE-----------ee---cc----cccCC
Confidence                  3344443 677899999999778999999999999999998865220           00   00    00112


Q ss_pred             CCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCC
Q 004468          212 PKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNG  291 (751)
Q Consensus       212 ~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg  291 (751)
                      .+|...|.+++|+| ++.+|++|+.|+.|++||+++......... .....|...+       .+|.. .|++++|+|++
T Consensus       253 ~~h~~~v~~v~~~~-~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~-~~~~~~~~~~-------~~h~~-~v~~~~~~~~~  322 (393)
T 1erj_A          253 TGHKDSVYSVVFTR-DGQSVVSGSLDRSVKLWNLQNANNKSDSKT-PNSGTCEVTY-------IGHKD-FVLSVATTQND  322 (393)
T ss_dssp             CCCSSCEEEEEECT-TSSEEEEEETTSEEEEEEC----------------CEEEEE-------ECCSS-CEEEEEECGGG
T ss_pred             CCCCCCEEEEEECC-CCCEEEEEeCCCEEEEEECCCCCCcccccC-CCCCcceEEE-------ecccC-cEEEEEECCCC
Confidence            34778899999999 479999999999999999987543221100 0011122222       34554 59999999999


Q ss_pred             CEEEEEeCCCcEEEEECCC
Q 004468          292 EEVLLSYSGEHVYLMDVNH  310 (751)
Q Consensus       292 ~~Ll~~s~d~~I~lwdl~~  310 (751)
                      .+|++++.|+.|++||+.+
T Consensus       323 ~~l~sgs~D~~v~iwd~~~  341 (393)
T 1erj_A          323 EYILSGSKDRGVLFWDKKS  341 (393)
T ss_dssp             CEEEEEETTSEEEEEETTT
T ss_pred             CEEEEEeCCCeEEEEECCC
Confidence            9999999999999999876

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.98  E-value=3.8e-30  Score=284.55  Aligned_cols=201  Identities=19%  Similarity=0.301  Sum_probs=158.3

Q ss_pred             cEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEec-ccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCC
Q 004468           52 CVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIE-TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGR  130 (751)
Q Consensus        52 ~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~-~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~  130 (751)
                      .++.|+||++ ++||+|. |++|+|||+.+++++..+. .+|...|++|+|+|+  |++|++|+.|++|+|||+.++   
T Consensus       107 y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspd--g~~lasgs~Dg~v~iWd~~~~---  179 (420)
T 4gga_A          107 YLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKE--GNYLAVGTSSAEVQLWDVQQQ---  179 (420)
T ss_dssp             TCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTT--SSEEEEEETTSCEEEEETTTT---
T ss_pred             cceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCC--CCEEEEEECCCeEEEEEcCCC---
Confidence            3678999975 5788775 8999999999998877652 468889999999999  899999999999999999864   


Q ss_pred             CCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccC
Q 004468          131 GLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLAD  210 (751)
Q Consensus       131 ~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  210 (751)
                             +++..+.+|...|.+++++   +.+|++|+.|+++++||.+.....                        +..
T Consensus       180 -------~~~~~~~~h~~~v~~~s~~---~~~l~sgs~d~~i~~~d~~~~~~~------------------------~~~  225 (420)
T 4gga_A          180 -------KRLRNMTSHSARVGSLSWN---SYILSSGSRSGHIHHHDVRVAEHH------------------------VAT  225 (420)
T ss_dssp             -------EEEEEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEETTSSSCE------------------------EEE
T ss_pred             -------cEEEEEeCCCCceEEEeeC---CCEEEEEeCCCceeEeeeccccee------------------------eEE
Confidence                   5688899999999998885   479999999999999998875421                        111


Q ss_pred             CCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCC
Q 004468          211 PPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPN  290 (751)
Q Consensus       211 ~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspd  290 (751)
                      ...|...+..+.++|. +.++++++.|+.|++||....+.....         +..+       ..|.. .|.+++|+|+
T Consensus       226 ~~~h~~~~~~~~~~~~-g~~l~s~~~D~~v~i~~~~~~~~~~~~---------~~~~-------~~~~~-~V~~~~~~p~  287 (420)
T 4gga_A          226 LSGHSQEVCGLRWAPD-GRHLASGGNDNLVNVWPSAPGEGGWVP---------LQTF-------TQHQG-AVKAVAWCPW  287 (420)
T ss_dssp             EECCSSCEEEEEECTT-SSEEEEEETTSCEEEEESSCCSSCSCC---------SEEE-------CCCSS-CEEEEEECTT
T ss_pred             ecccccceeeeeecCC-CCeeeeeeccccceEEeecccccccee---------eeee-------cccCC-ceeeeeeCCC
Confidence            2236678999999994 799999999999999999876432110         1111       12333 5999999997


Q ss_pred             CCEE-EEE--eCCCcEEEEECCCC
Q 004468          291 GEEV-LLS--YSGEHVYLMDVNHA  311 (751)
Q Consensus       291 g~~L-l~~--s~d~~I~lwdl~~~  311 (751)
                      +..+ +++  +.|++|+|||+.++
T Consensus       288 ~~~~la~~~gs~D~~I~iwd~~t~  311 (420)
T 4gga_A          288 QSNVLATGGGTSDRHIRIWNVCSG  311 (420)
T ss_dssp             CTTEEEEEECTTTCEEEEEETTTT
T ss_pred             cccEEEEEeecCCCEEEEEeCCcc
Confidence            7644 443  35899999998873

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.98  E-value=1.9e-30  Score=277.15  Aligned_cols=205  Identities=15%  Similarity=0.151  Sum_probs=167.8

Q ss_pred             cEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCe---EEEEecccCCcceEEEEEecCCCCc-EEEEEECCCc
Q 004468           43 ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK---LLHSIETGHSANVFCTKFVPETSDE-LVVSGAGDAE  118 (751)
Q Consensus        43 ~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~---~~~~l~~~h~~~V~~v~fsp~s~~~-~l~sgs~Dg~  118 (751)
                      .....+|.+.|++++|+|++++|++|+.|+.|+||++.++.   ....+ .+|...|.+++|+|+  +. +|++|+.|+.
T Consensus         4 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~--~~~~l~~~~~dg~   80 (342)
T 1yfq_A            4 VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQS-LRYKHPLLCCNFIDN--TDLQIYVGTVQGE   80 (342)
T ss_dssp             EECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEE-EECSSCEEEEEEEES--SSEEEEEEETTSC
T ss_pred             eecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceee-eecCCceEEEEECCC--CCcEEEEEcCCCe
Confidence            44457899999999999999999999999999999998776   33444 589999999999999  79 9999999999


Q ss_pred             EEEEEC-CCCCCCCCCCCCCCCceeecc--cCCceeEEEEecCCCCEEEEEeCCCcEEEEecCC---------CCCCCCC
Q 004468          119 VRLFNL-SRFSGRGLDDNAITPSALYQC--HTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQ---------GSSCPPA  186 (751)
Q Consensus       119 V~vwd~-~~~~~~~~~~~~~~~~~~~~~--h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~---------~~~~~~~  186 (751)
                      |++||+ ...           ....+.+  |...|.+++|+|  +.+|++++.||+|++||+++         .+..   
T Consensus        81 i~~wd~~~~~-----------~~~~~~~~~~~~~v~~l~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~---  144 (342)
T 1yfq_A           81 ILKVDLIGSP-----------SFQALTNNEANLGICRICKYG--DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNS---  144 (342)
T ss_dssp             EEEECSSSSS-----------SEEECBSCCCCSCEEEEEEET--TTEEEEEETTSEEEEECHHHHTTBCEEEEESCS---
T ss_pred             EEEEEeccCC-----------ceEeccccCCCCceEEEEeCC--CCEEEEEcCCCeEEEEcccccccccccccCCee---
Confidence            999999 753           2467788  999999999999  57899999999999999986         3311   


Q ss_pred             CCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCC-CCCccccCCCCCCCCccc
Q 004468          187 GSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM-LPPLTSCQKRMSPPPCVN  265 (751)
Q Consensus       187 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~-~~~~~~~~~~~~~~~~~~  265 (751)
                                            .... +...|.+++|+|+ .  +++++.|+.|++||+++ ......            
T Consensus       145 ----------------------~~~~-~~~~v~~~~~~~~-~--l~~~~~d~~i~i~d~~~~~~~~~~------------  186 (342)
T 1yfq_A          145 ----------------------NNTK-VKNKIFTMDTNSS-R--LIVGMNNSQVQWFRLPLCEDDNGT------------  186 (342)
T ss_dssp             ----------------------SSSS-SCCCEEEEEECSS-E--EEEEESTTEEEEEESSCCTTCCCE------------
T ss_pred             ----------------------eEEe-eCCceEEEEecCC-c--EEEEeCCCeEEEEECCccccccce------------
Confidence                                  1111 5678999999984 2  99999999999999987 432100            


Q ss_pred             cccccccccCCccccceEEEEEcC-CCCEEEEEeCCCcEEEEECCCC
Q 004468          266 YFCPMHLSEHGRSSLHLTHVTFSP-NGEEVLLSYSGEHVYLMDVNHA  311 (751)
Q Consensus       266 ~~~~~~~~~~g~~~~~vt~v~fsp-dg~~Ll~~s~d~~I~lwdl~~~  311 (751)
                      ..      ...+. ..|++++|+| ++++|++++.|+.|+||++...
T Consensus       187 ~~------~~~~~-~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~  226 (342)
T 1yfq_A          187 IE------ESGLK-YQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQ  226 (342)
T ss_dssp             EE------ECSCS-SCEEEEEECSGGGCEEEEEETTSEEEEEECCTT
T ss_pred             ee------ecCCC-CceeEEEECCCCCCEEEEEecCCcEEEEEEcCC
Confidence            00      01122 2599999999 9999999999999999998873

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.98  E-value=1.5e-30  Score=311.94  Aligned_cols=251  Identities=16%  Similarity=0.195  Sum_probs=208.3

Q ss_pred             ccccccchhhhccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCC
Q 004468           27 NHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETS  106 (751)
Q Consensus        27 ~~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~  106 (751)
                      +..+++|+.  .+.+.+.++.+|.+.|++++|+|+|++||+|+.||.|+|||+.+++.+..+ .+|.+.|.+++|+|+  
T Consensus        34 ~g~v~iwd~--~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~-~~~~~~v~~~~~s~~--  108 (814)
T 3mkq_A           34 SGRVEIWNY--ETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDF-EAHPDYIRSIAVHPT--  108 (814)
T ss_dssp             TSEEEEEET--TTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEE-ECCSSCEEEEEECSS--
T ss_pred             CCEEEEEEC--CCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEE-ecCCCCEEEEEEeCC--
Confidence            566777763  456678899999999999999999999999999999999999999999988 899999999999999  


Q ss_pred             CcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCC
Q 004468          107 DELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPA  186 (751)
Q Consensus       107 ~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~  186 (751)
                      +.+|++|+.|++|++||+....         .....+.+|...|.+++|+|.++..|++++.||+|++||++++...   
T Consensus       109 ~~~l~~~~~dg~i~vw~~~~~~---------~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~---  176 (814)
T 3mkq_A          109 KPYVLSGSDDLTVKLWNWENNW---------ALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPN---  176 (814)
T ss_dssp             SSEEEEEETTSEEEEEEGGGTS---------EEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCS---
T ss_pred             CCEEEEEcCCCEEEEEECCCCc---------eEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcce---
Confidence            7999999999999999998531         3467788999999999999966789999999999999999876532   


Q ss_pred             CCCCCccceEEEecccCceecccCCCCCccceEEEEEeCC-CCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccc
Q 004468          187 GSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISST-RPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVN  265 (751)
Q Consensus       187 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~-~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~  265 (751)
                              ..+.             ..+...+.+++|+|. ++.+|++|+.|+.|++||+++.+.+..+           
T Consensus       177 --------~~~~-------------~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~-----------  224 (814)
T 3mkq_A          177 --------FTLT-------------TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL-----------  224 (814)
T ss_dssp             --------EEEE-------------CCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEE-----------
T ss_pred             --------eEEe-------------cCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEE-----------
Confidence                    1110             113367889999982 3689999999999999999875433221           


Q ss_pred             cccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcceeeeecCCCceeEEeCCCCCCc
Q 004468          266 YFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGL  336 (751)
Q Consensus       266 ~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp~~~~~  336 (751)
                               .+|.. .|++++|+|+|++|++++.|+.|++||+.++........+...+..++|+|+...+
T Consensus       225 ---------~~~~~-~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  285 (814)
T 3mkq_A          225 ---------EGHMS-NVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKN  285 (814)
T ss_dssp             ---------ECCSS-CEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGG
T ss_pred             ---------cCCCC-CEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCce
Confidence                     22333 59999999999999999999999999999976666566666788889999987643

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.98  E-value=1.3e-31  Score=295.29  Aligned_cols=219  Identities=14%  Similarity=0.130  Sum_probs=165.7

Q ss_pred             cEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCC
Q 004468           52 CVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRG  131 (751)
Q Consensus        52 ~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~  131 (751)
                      .+++++|+|+|++|++|+.|+.|++||+.+++....+ ..| ..+....|+|+  +++|++|+.|+.|+|||+...    
T Consensus        58 ~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~-~~~-~~~~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~----  129 (420)
T 3vl1_A           58 AGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKML-KRA-DYTAVDTAKLQ--MRRFILGTTEGDIKVLDSNFN----  129 (420)
T ss_dssp             CCTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTS-CSC-CEEEEEEECSS--SCEEEEEETTSCEEEECTTSC----
T ss_pred             cccceeeeecCCeEEEEEcCCcEEEEEecccceeeEE-ecC-CceEEEEEecC--CCEEEEEECCCCEEEEeCCCc----
Confidence            3458999999999999999999999999887766555 455 44555567888  799999999999999999854    


Q ss_pred             CCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCC
Q 004468          132 LDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADP  211 (751)
Q Consensus       132 ~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  211 (751)
                            .+...+.+|...|++++|+| ++.+|++|+.||+|++||+++++..           ..              .
T Consensus       130 ------~~~~~~~~h~~~v~~~~~~~-~~~~l~s~s~d~~i~iwd~~~~~~~-----------~~--------------~  177 (420)
T 3vl1_A          130 ------LQREIDQAHVSEITKLKFFP-SGEALISSSQDMQLKIWSVKDGSNP-----------RT--------------L  177 (420)
T ss_dssp             ------EEEEETTSSSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTCCCC-----------EE--------------E
T ss_pred             ------ceeeecccccCccEEEEECC-CCCEEEEEeCCCeEEEEeCCCCcCc-----------eE--------------E
Confidence                  44667789999999999999 6789999999999999999987532           11              1


Q ss_pred             CCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCcccccc--cccc-ccCCccccceEEEEEc
Q 004468          212 PKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFC--PMHL-SEHGRSSLHLTHVTFS  288 (751)
Q Consensus       212 ~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~g~~~~~vt~v~fs  288 (751)
                      ..|...|.+++|+|+ +.+|++++.|+.|++||+++.+.+..+.........+....  +... .........+++++|+
T Consensus       178 ~~h~~~v~~~~~~~~-~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s  256 (420)
T 3vl1_A          178 IGHRATVTDIAIIDR-GRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFG  256 (420)
T ss_dssp             ECCSSCEEEEEEETT-TTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSS
T ss_pred             cCCCCcEEEEEEcCC-CCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEc
Confidence            236788999999994 78999999999999999998776554432211111111000  0000 0000011247778889


Q ss_pred             CCCCEEEEEeCCCcEEEEECCCC
Q 004468          289 PNGEEVLLSYSGEHVYLMDVNHA  311 (751)
Q Consensus       289 pdg~~Ll~~s~d~~I~lwdl~~~  311 (751)
                      |+|++|++++.|+.|++||+.++
T Consensus       257 ~~~~~l~~~~~dg~i~i~d~~~~  279 (420)
T 3vl1_A          257 TYGKYVIAGHVSGVITVHNVFSK  279 (420)
T ss_dssp             CTTEEEEEEETTSCEEEEETTTC
T ss_pred             CCCCEEEEEcCCCeEEEEECCCC
Confidence            99999999999999999998773

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.98  E-value=6.9e-30  Score=269.64  Aligned_cols=199  Identities=19%  Similarity=0.275  Sum_probs=155.9

Q ss_pred             EEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEec-ccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCC
Q 004468           53 VNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIE-TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRG  131 (751)
Q Consensus        53 V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~-~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~  131 (751)
                      +++|+||+++ +||+|. |++|+|||+.+++++..+. .+|...|.+++|+|+  +++|++|+.|++|+|||+.++    
T Consensus        28 ~~~l~WS~~~-~lAvg~-D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~--~~~l~sgs~Dg~v~iw~~~~~----   99 (318)
T 4ggc_A           28 LNLVDWSSGN-VLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKE--GNYLAVGTSSAEVQLWDVQQQ----   99 (318)
T ss_dssp             CBCEEECTTS-EEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTT--SSEEEEEETTSEEEEEETTTT----
T ss_pred             ceEEEECCCC-EEEEEe-CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCC--CCEEEEEECCCcEEEeecCCc----
Confidence            5789999886 777764 8999999999999887762 468889999999999  899999999999999999975    


Q ss_pred             CCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCC
Q 004468          132 LDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADP  211 (751)
Q Consensus       132 ~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  211 (751)
                            +++..+.+|...+.++.+.   +.++++++.++.+++|+.......                        +...
T Consensus       100 ------~~~~~~~~h~~~~~~~~~~---~~~l~s~~~~~~~~~~~~~~~~~~------------------------~~~~  146 (318)
T 4ggc_A          100 ------KRLRNMTSHSARVGSLSWN---SYILSSGSRSGHIHHHDVRVAEHH------------------------VATL  146 (318)
T ss_dssp             ------EEEEEEECCSSCEEEEEEE---TTEEEEEETTSEEEEEETTSSSCE------------------------EEEE
T ss_pred             ------eeEEEecCccceEEEeecC---CCEEEEEecCCceEeeecCCCcee------------------------EEEE
Confidence                  5678899999998877664   478999999999999998775421                        1112


Q ss_pred             CCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCC
Q 004468          212 PKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNG  291 (751)
Q Consensus       212 ~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg  291 (751)
                      ..|...+..+.+++. +.++++++.|+.|++||+++.+......         ..       ...+. ..|..++++|++
T Consensus       147 ~~~~~~~~~~~~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~---------~~-------~~~~~-~~v~~~~~~~~~  208 (318)
T 4ggc_A          147 SGHSQEVCGLRWAPD-GRHLASGGNDNLVNVWPSAPGEGGWVPL---------QT-------FTQHQ-GAVKAVAWCPWQ  208 (318)
T ss_dssp             ECCSSCEEEEEECTT-SSEEEEEETTSCEEEEESSCBTTBSCCS---------EE-------ECCCC-SCEEEEEECTTS
T ss_pred             cCccCceEEEEEcCC-CCEEEEEecCcceeEEECCCCcccccce---------ee-------ecccC-CceEEEEecCCC
Confidence            236678899999994 7899999999999999998765322110         00       01122 259999999987


Q ss_pred             CEEE---EEeCCCcEEEEECCC
Q 004468          292 EEVL---LSYSGEHVYLMDVNH  310 (751)
Q Consensus       292 ~~Ll---~~s~d~~I~lwdl~~  310 (751)
                      ..++   +++.++.|++||...
T Consensus       209 ~~~~~~~~~~~~~~i~lwd~~~  230 (318)
T 4ggc_A          209 SNVLATGGGTSDRHIRIWNVCS  230 (318)
T ss_dssp             TTEEEEEECTTTCEEEEEETTT
T ss_pred             CcEEEEEecCCCCEEEEEeccc
Confidence            6544   445689999999776

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.98  E-value=3e-30  Score=277.29  Aligned_cols=227  Identities=17%  Similarity=0.234  Sum_probs=177.6

Q ss_pred             ccccccccchhhhc-----cccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEE
Q 004468           25 DVNHSLQMHSSLVR-----RLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCT   99 (751)
Q Consensus        25 ~~~~~l~~~~~~i~-----~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v   99 (751)
                      ..+..+++|+....     ...+...|.+|.+.|++++|+|++.+|+||+.|++|+|||+.+++.+..+ .+|...|.++
T Consensus        46 s~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~-~~h~~~v~~v  124 (343)
T 2xzm_R           46 SRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRF-VGHQSEVYSV  124 (343)
T ss_dssp             ETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEE-ECCCSCEEEE
T ss_pred             cCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEE-cCCCCcEEEE
Confidence            34678888875432     23456789999999999999999999999999999999999999999888 8999999999


Q ss_pred             EEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCC---------CCEEEEEeCCC
Q 004468          100 KFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGN---------PHVVWSASEDG  170 (751)
Q Consensus       100 ~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~---------~~~l~s~s~Dg  170 (751)
                      +|+|+  +++|++|+.|++|++||+.....        ........|...|.+++|+|..         +.+|++++.||
T Consensus       125 ~~sp~--~~~l~s~~~d~~i~~wd~~~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~  194 (343)
T 2xzm_R          125 AFSPD--NRQILSAGAEREIKLWNILGECK--------FSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDG  194 (343)
T ss_dssp             EECSS--TTEEEEEETTSCEEEEESSSCEE--------EECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTS
T ss_pred             EECCC--CCEEEEEcCCCEEEEEeccCCce--------eeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCC
Confidence            99999  89999999999999999973210        0112234799999999999954         26899999999


Q ss_pred             cEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCC
Q 004468          171 TLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPP  250 (751)
Q Consensus       171 ~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~  250 (751)
                      +|++||.....               ..           ....|...|.+++|+| ++.+|++|+.|+.|++||++....
T Consensus       195 ~i~iwd~~~~~---------------~~-----------~~~~h~~~v~~~~~s~-~g~~l~sgs~dg~v~iwd~~~~~~  247 (343)
T 2xzm_R          195 RLKVWNTNFQI---------------RY-----------TFKAHESNVNHLSISP-NGKYIATGGKDKKLLIWDILNLTY  247 (343)
T ss_dssp             EEEEEETTTEE---------------EE-----------EEECCSSCEEEEEECT-TSSEEEEEETTCEEEEEESSCCSS
T ss_pred             EEEEEcCCCce---------------eE-----------EEcCccccceEEEECC-CCCEEEEEcCCCeEEEEECCCCcc
Confidence            99999943210               10           1123667899999999 589999999999999999954321


Q ss_pred             ccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 004468          251 LTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (751)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~  311 (751)
                      .            ...+      .  + ...|++++|+|++.+|+ ++.|+.|++||+.+.
T Consensus       248 ~------------~~~~------~--~-~~~v~~v~~sp~~~~la-~~~d~~v~iw~~~~~  286 (343)
T 2xzm_R          248 P------------QREF------D--A-GSTINQIAFNPKLQWVA-VGTDQGVKIFNLMTQ  286 (343)
T ss_dssp             C------------SEEE------E--C-SSCEEEEEECSSSCEEE-EEESSCEEEEESSSC
T ss_pred             c------------ceee------c--C-CCcEEEEEECCCCCEEE-EECCCCEEEEEeCCC
Confidence            1            1111      0  1 11499999999998765 456888999999873

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.1e-30  Score=287.12  Aligned_cols=265  Identities=15%  Similarity=0.215  Sum_probs=203.3

Q ss_pred             ccccccccchhhhccc-cccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCC----CeEEEEecccCCcceEEE
Q 004468           25 DVNHSLQMHSSLVRRL-SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSS----RKLLHSIETGHSANVFCT   99 (751)
Q Consensus        25 ~~~~~l~~~~~~i~~~-~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~----~~~~~~l~~~h~~~V~~v   99 (751)
                      ..+..+++|+...... +++..+ .|.+.|++++|+|++++||+|+.||.|+|||+.+    .+.+..+ .+|...|.++
T Consensus        42 ~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~-~~h~~~v~~~  119 (416)
T 2pm9_A           42 STDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARF-SNHSSSVKTV  119 (416)
T ss_dssp             CCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEEC-CCSSSCCCEE
T ss_pred             CCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhc-cCCccceEEE
Confidence            3466788887544332 244444 5999999999999999999999999999999987    3466667 7999999999


Q ss_pred             EEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCC
Q 004468          100 KFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQ  179 (751)
Q Consensus       100 ~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~  179 (751)
                      +|+|+. +.+|++|+.|+.|++||+........ ......+..+..|...|.+++|+|+++.+|++++.||.|++||+++
T Consensus       120 ~~~~~~-~~~l~s~~~dg~v~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~  197 (416)
T 2pm9_A          120 KFNAKQ-DNVLASGGNNGEIFIWDMNKCTESPS-NYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKA  197 (416)
T ss_dssp             EECSSS-TTBEEEECSSSCEEBCBTTTTSSCTT-TCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTT
T ss_pred             EEcCCC-CCEEEEEcCCCeEEEEECCCCccccc-cccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCC
Confidence            999984 68999999999999999986531100 0000112345679999999999996589999999999999999988


Q ss_pred             CCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCC---eEEEEeCCCCC-CccccC
Q 004468          180 GSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDA---FARLYDRRMLP-PLTSCQ  255 (751)
Q Consensus       180 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~---~IriwD~~~~~-~~~~~~  255 (751)
                      ++..              ..+...     ....++...|.+++|+|++..++++++.|+   .|++||+++.. ++..  
T Consensus       198 ~~~~--------------~~~~~~-----~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~--  256 (416)
T 2pm9_A          198 KKEV--------------IHLSYT-----SPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQT--  256 (416)
T ss_dssp             TEEE--------------EEECCC-----CCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBC--
T ss_pred             CCcc--------------eEEecc-----ccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEE--
Confidence            6521              110000     001123678999999997668999999999   99999999753 2211  


Q ss_pred             CCCCCCCccccccccccccC-CccccceEEEEEcC-CCCEEEEEeCCCcEEEEECCCCCcceeeeecCCCceeEEeCCCC
Q 004468          256 KRMSPPPCVNYFCPMHLSEH-GRSSLHLTHVTFSP-NGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTL  333 (751)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~-g~~~~~vt~v~fsp-dg~~Ll~~s~d~~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp~~  333 (751)
                                 +       . +|.. .|++++|+| ++++|++++.|+.|++||+.++........+...+..++|+|+.
T Consensus       257 -----------~-------~~~~~~-~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~  317 (416)
T 2pm9_A          257 -----------L-------NQGHQK-GILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEA  317 (416)
T ss_dssp             -----------C-------CSCCSS-CEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTC
T ss_pred             -----------e-------ecCccC-ceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCC
Confidence                       1       1 3433 599999999 99999999999999999999977666666677788889999976

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=2.8e-30  Score=279.36  Aligned_cols=222  Identities=15%  Similarity=0.237  Sum_probs=179.2

Q ss_pred             cccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCC--CCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCc
Q 004468           41 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYS--SRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAE  118 (751)
Q Consensus        41 ~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~--~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~  118 (751)
                      +++.+|++|.+.|++++|+|+|++||+|+.||.|+|||+.  +++.+..+ .+|...|.+++|+|+.++.+|++|+.|+.
T Consensus         2 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~l~s~~~dg~   80 (379)
T 3jrp_A            2 SMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTL-TGHEGPVWRVDWAHPKFGTILASCSYDGK   80 (379)
T ss_dssp             ---CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEE-CCCSSCEEEEEECCGGGCSEEEEEETTSC
T ss_pred             CccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEe-cCCCCcEEEEEeCCCCCCCEEEEeccCCE
Confidence            4567899999999999999999999999999999999997  55666777 79999999999987644689999999999


Q ss_pred             EEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCC-CCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEE
Q 004468          119 VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGN-PHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNIL  197 (751)
Q Consensus       119 V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l  197 (751)
                      |+|||+..+..        ..+..+..|...|.+++|+|++ +.+|++++.||+|++||++......          .. 
T Consensus        81 v~iwd~~~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~----------~~-  141 (379)
T 3jrp_A           81 VLIWKEENGRW--------SQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTS----------PI-  141 (379)
T ss_dssp             EEEEEEETTEE--------EEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCC----------EE-
T ss_pred             EEEEEcCCCce--------eEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCcee----------eE-
Confidence            99999986421        2567788899999999999942 7899999999999999998864220          00 


Q ss_pred             EecccCceecccCCCCCccceEEEEEeCC------------CCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccc
Q 004468          198 LDLRCGAKRSLADPPKQTLSLKSCDISST------------RPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVN  265 (751)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~v~~i~~sp~------------~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~  265 (751)
                                  ....+...|.+++|+|.            ++.+|++|+.|+.|++||++.......         +..
T Consensus       142 ------------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~---------~~~  200 (379)
T 3jrp_A          142 ------------IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYV---------LES  200 (379)
T ss_dssp             ------------EEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEE---------EEE
T ss_pred             ------------EecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCccee---------eEE
Confidence                        11235678999999995            478999999999999999986542211         011


Q ss_pred             cccccccccCCccccceEEEEEcCC---CCEEEEEeCCCcEEEEECCCC
Q 004468          266 YFCPMHLSEHGRSSLHLTHVTFSPN---GEEVLLSYSGEHVYLMDVNHA  311 (751)
Q Consensus       266 ~~~~~~~~~~g~~~~~vt~v~fspd---g~~Ll~~s~d~~I~lwdl~~~  311 (751)
                      .+       .+|.. .|++++|+|+   +++|++++.|+.|+|||+.++
T Consensus       201 ~~-------~~h~~-~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~  241 (379)
T 3jrp_A          201 TL-------EGHSD-WVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNE  241 (379)
T ss_dssp             EE-------CCCSS-CEEEEEECCCCSSSEEEEEEETTSCEEEEEESST
T ss_pred             EE-------ecccC-cEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCC
Confidence            11       23443 6999999999   899999999999999998873

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.97  E-value=2.5e-30  Score=272.02  Aligned_cols=252  Identities=15%  Similarity=0.208  Sum_probs=194.0

Q ss_pred             cEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCC--CeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEE
Q 004468           43 ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSS--RKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR  120 (751)
Q Consensus        43 ~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~--~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~  120 (751)
                      +..+.+|.+.|++++|+|+|++||||+.|++|+|||+..  .+.+.++ .+|.+.|.+++|+|...+++|+||+.|++|+
T Consensus         2 ~~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l-~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~   80 (297)
T 2pm7_B            2 VVIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTL-TGHEGPVWRVDWAHPKFGTILASCSYDGKVM   80 (297)
T ss_dssp             CEECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEE-CCCSSCEEEEEECCGGGCSEEEEEETTTEEE
T ss_pred             ceeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEE-ccccCCeEEEEecCCCcCCEEEEEcCCCEEE
Confidence            456889999999999999999999999999999999874  3566777 8999999999998642268999999999999


Q ss_pred             EEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCC-CCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEe
Q 004468          121 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGN-PHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD  199 (751)
Q Consensus       121 vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~  199 (751)
                      |||+..+..        ..+..+.+|...|.+++|+|+. +.+|++++.||+|++||++......          ...  
T Consensus        81 iWd~~~~~~--------~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~----------~~~--  140 (297)
T 2pm7_B           81 IWKEENGRW--------SQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTS----------PII--  140 (297)
T ss_dssp             EEEBSSSCB--------CCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBC----------CEE--
T ss_pred             EEEcCCCce--------EEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCcee----------eee--
Confidence            999985421        3466788899999999999942 6899999999999999998753110          001  


Q ss_pred             cccCceecccCCCCCccceEEEEEeCCC------------CcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccc
Q 004468          200 LRCGAKRSLADPPKQTLSLKSCDISSTR------------PHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYF  267 (751)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~v~~i~~sp~~------------~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~  267 (751)
                                 ...|...|.+++|+|..            +.+|++|+.|+.|+|||+++......         +...+
T Consensus       141 -----------~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~---------~~~~l  200 (297)
T 2pm7_B          141 -----------IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYV---------LESTL  200 (297)
T ss_dssp             -----------EECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEE---------EEEEE
T ss_pred             -----------eecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEE---------EEEEe
Confidence                       12366789999999952            46999999999999999986532110         01111


Q ss_pred             cccccccCCccccceEEEEEcCCC---CEEEEEeCCCcEEEEECCCCCcc--eee---eecCCCceeEEeCCCCCCcccC
Q 004468          268 CPMHLSEHGRSSLHLTHVTFSPNG---EEVLLSYSGEHVYLMDVNHAGGR--AMR---YTVGDASKIMSFTPTLNGLELQ  339 (751)
Q Consensus       268 ~~~~~~~~g~~~~~vt~v~fspdg---~~Ll~~s~d~~I~lwdl~~~~~~--~~~---~~~~~~~~~~~~sp~~~~~~~~  339 (751)
                             .+|.. .|++++|+|++   .+|++++.|+.|+|||+.+....  ...   ..+...+..++|+|+.+.++..
T Consensus       201 -------~~H~~-~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~  272 (297)
T 2pm7_B          201 -------EGHSD-WVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALS  272 (297)
T ss_dssp             -------CCCSS-CEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEE
T ss_pred             -------cCCCC-ceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEE
Confidence                   34554 69999999995   89999999999999999874321  111   2334567788999988776655


Q ss_pred             CCcc
Q 004468          340 PPIH  343 (751)
Q Consensus       340 ~~~~  343 (751)
                      ..+.
T Consensus       273 ~~D~  276 (297)
T 2pm7_B          273 GGDN  276 (297)
T ss_dssp             ETTS
T ss_pred             cCCC
Confidence            4433

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.97  E-value=5.1e-31  Score=280.02  Aligned_cols=175  Identities=13%  Similarity=0.073  Sum_probs=126.2

Q ss_pred             EEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecC-CCCEE
Q 004468           85 LHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVG-NPHVV  163 (751)
Q Consensus        85 ~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~-~~~~l  163 (751)
                      +..+..+|.+.|.+++|+|+  +++|+||+.|++|+|||+..+..        .++..+.+|...|.+++|+|. ++.+|
T Consensus         5 ~~~~~~~H~~~V~~v~~s~~--g~~lasgs~D~~v~lwd~~~~~~--------~~~~~l~gH~~~V~~v~~~~~~~~~~l   74 (316)
T 3bg1_A            5 INTVDTSHEDMIHDAQMDYY--GTRLATCSSDRSVKIFDVRNGGQ--------ILIADLRGHEGPVWQVAWAHPMYGNIL   74 (316)
T ss_dssp             ---------CCEEEEEECGG--GCEEEEEETTTEEEEEEEETTEE--------EEEEEEECCSSCEEEEEECCGGGSSCE
T ss_pred             eeeecccccCeEEEeeEcCC--CCEEEEEeCCCeEEEEEecCCCc--------EEEEEEcCCCccEEEEEeCCCCCCCEE
Confidence            33444799999999999999  89999999999999999975321        236778999999999999853 46899


Q ss_pred             EEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCC-CcEEEEEeCCCeEEE
Q 004468          164 WSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR-PHLLLVGGSDAFARL  242 (751)
Q Consensus       164 ~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~-~~~l~sgs~D~~Iri  242 (751)
                      +||+.|++|++||++++...            .           +.....|...|++++|+|++ +.+|++|+.|+.|++
T Consensus        75 ~s~s~D~~v~iWd~~~~~~~------------~-----------~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~l  131 (316)
T 3bg1_A           75 ASCSYDRKVIIWREENGTWE------------K-----------SHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISL  131 (316)
T ss_dssp             EEEETTSCEEEECCSSSCCC------------E-----------EEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEE
T ss_pred             EEEECCCEEEEEECCCCcce------------E-----------EEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEE
Confidence            99999999999999875311            0           11123467789999999963 689999999999999


Q ss_pred             EeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCC-----------------CCEEEEEeCCCcEEE
Q 004468          243 YDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPN-----------------GEEVLLSYSGEHVYL  305 (751)
Q Consensus       243 wD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspd-----------------g~~Ll~~s~d~~I~l  305 (751)
                      ||++.......          ...+       .+|.. .|++++|+|+                 +++|++++.|+.|+|
T Consensus       132 wd~~~~~~~~~----------~~~~-------~~h~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~l  193 (316)
T 3bg1_A          132 LTYTGEGQWEV----------KKIN-------NAHTI-GCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKL  193 (316)
T ss_dssp             EEECSSSCEEE----------CCBT-------TSSSS-CBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCE
T ss_pred             EecCCCCCcce----------eeee-------ccccC-CcceEEEccccCCccccccccccCccccceEEEecCCCeEEE
Confidence            99986421100          0000       23433 5888999997                 357777778888888


Q ss_pred             EECCC
Q 004468          306 MDVNH  310 (751)
Q Consensus       306 wdl~~  310 (751)
                      ||+..
T Consensus       194 Wd~~~  198 (316)
T 3bg1_A          194 WKEEE  198 (316)
T ss_dssp             EEECT
T ss_pred             EEeCC
Confidence            87643

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.97  E-value=4.5e-30  Score=278.62  Aligned_cols=207  Identities=9%  Similarity=0.078  Sum_probs=138.4

Q ss_pred             CCcEEEEEECCCCCEEEEEeCCC-------cEEEEeCCCCeE----------EEEecccCCcceEEEEEecCCCCcEEEE
Q 004468           50 QGCVNAISWNSKGSLLISGSDDT-------HINVWSYSSRKL----------LHSIETGHSANVFCTKFVPETSDELVVS  112 (751)
Q Consensus        50 ~~~V~~l~~s~dg~~LaSgs~Dg-------~I~IWd~~~~~~----------~~~l~~~h~~~V~~v~fsp~s~~~~l~s  112 (751)
                      .-+|++++|+|||++||+||.|.       .|+||++.....          ...+ .+|...|.++++.+    ..+++
T Consensus        14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l-~~~~~~v~s~~~~~----~~~~~   88 (365)
T 4h5i_A           14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFAL-EDNDDSPTAIDASK----GIILV   88 (365)
T ss_dssp             SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEEC-CTTSCCCCEEEEET----TEEEE
T ss_pred             CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEc-cCCCCceEEEEeCC----CEEEE
Confidence            45899999999999999998654       499999865421          1233 67888999988764    35555


Q ss_pred             E-----------ECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEE--EEeCCCcEEEEecCC
Q 004468          113 G-----------AGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVW--SASEDGTLRQHDFRQ  179 (751)
Q Consensus       113 g-----------s~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~--s~s~Dg~I~iwDlr~  179 (751)
                      |           +.|+.+++|++....+.... ...........+...|+.++|+| ++++++  +++.|++|++||+++
T Consensus        89 g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~fSp-Dg~~la~as~~~d~~i~iwd~~~  166 (365)
T 4h5i_A           89 GCNENSTKITQGKGNKHLRKFKYDKVNDQLEF-LTSVDFDASTNADDYTKLVYISR-EGTVAAIASSKVPAIMRIIDPSD  166 (365)
T ss_dssp             ECCCCHHHHHHTSCCCCEEEEEEETTTTEEEE-EEEECSSCCCCTTCCEEEEEECT-TSSCEEEEESCSSCEEEEEETTT
T ss_pred             EECCCccEEEEecCCCcEEEEEecCCCceEEE-eeeeceeecCCcccCEEEEEEcC-CCCEEEEEECCCCCEEEEeECCC
Confidence            5           45788999998754321100 00000111234556799999999 556654  455799999999988


Q ss_pred             CCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCC
Q 004468          180 GSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMS  259 (751)
Q Consensus       180 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~  259 (751)
                      ++..              ..+            .+...|++++|+| ++.++++++.| .+++|+..+...+...     
T Consensus       167 ~~~~--------------~~~------------~~~~~V~~v~fsp-dg~~l~s~s~~-~~~~~~~~~~~~~~~~-----  213 (365)
T 4h5i_A          167 LTEK--------------FEI------------ETRGEVKDLHFST-DGKVVAYITGS-SLEVISTVTGSCIARK-----  213 (365)
T ss_dssp             TEEE--------------EEE------------ECSSCCCEEEECT-TSSEEEEECSS-CEEEEETTTCCEEEEE-----
T ss_pred             CcEE--------------EEe------------CCCCceEEEEEcc-CCceEEeccce-eEEEEEeccCcceeee-----
Confidence            6521              111            1445799999999 57899998855 4666666554322110     


Q ss_pred             CCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCC----cEEEEECCC
Q 004468          260 PPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGE----HVYLMDVNH  310 (751)
Q Consensus       260 ~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~----~I~lwdl~~  310 (751)
                                   ...+|.. .|++++|+|+|++|++++.|+    .+++|++..
T Consensus       214 -------------~~~~~~~-~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~  254 (365)
T 4h5i_A          214 -------------TDFDKNW-SLSKINFIADDTVLIAASLKKGKGIVLTKISIKS  254 (365)
T ss_dssp             -------------CCCCTTE-EEEEEEEEETTEEEEEEEESSSCCEEEEEEEEET
T ss_pred             -------------ecCCCCC-CEEEEEEcCCCCEEEEEecCCcceeEEeeccccc
Confidence                         0122333 599999999999999998876    566676544

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.97  E-value=2.1e-29  Score=278.63  Aligned_cols=227  Identities=16%  Similarity=0.245  Sum_probs=184.7

Q ss_pred             cccccccchhhhccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCC
Q 004468           26 VNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPET  105 (751)
Q Consensus        26 ~~~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s  105 (751)
                      +++.+++|+....+......+.+|.+.|++|+|+|+|++||+|+.||+|+|||+.+++.+..+ .+|...|.++.|.   
T Consensus       123 ld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~-~~h~~~v~~~s~~---  198 (420)
T 4gga_A          123 LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM-TSHSARVGSLSWN---  198 (420)
T ss_dssp             ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEEE---
T ss_pred             eCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEE-eCCCCceEEEeeC---
Confidence            467888888655444444556688899999999999999999999999999999999999998 8999999999886   


Q ss_pred             CCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCC
Q 004468          106 SDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPP  185 (751)
Q Consensus       106 ~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~  185 (751)
                       +.+|++|+.|+.+++||.....         ..+..+.+|...+..+.|+| ++.++++++.|+.|++||++.++....
T Consensus       199 -~~~l~sgs~d~~i~~~d~~~~~---------~~~~~~~~h~~~~~~~~~~~-~g~~l~s~~~D~~v~i~~~~~~~~~~~  267 (420)
T 4gga_A          199 -SYILSSGSRSGHIHHHDVRVAE---------HHVATLSGHSQEVCGLRWAP-DGRHLASGGNDNLVNVWPSAPGEGGWV  267 (420)
T ss_dssp             -TTEEEEEETTSEEEEEETTSSS---------CEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEESSCCSSCSC
T ss_pred             -CCEEEEEeCCCceeEeeecccc---------eeeEEecccccceeeeeecC-CCCeeeeeeccccceEEeeccccccce
Confidence             4689999999999999998642         44678899999999999999 678999999999999999988753210


Q ss_pred             CCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEE--eCCCeEEEEeCCCCCCccccCCCCCCCCc
Q 004468          186 AGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVG--GSDAFARLYDRRMLPPLTSCQKRMSPPPC  263 (751)
Q Consensus       186 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sg--s~D~~IriwD~~~~~~~~~~~~~~~~~~~  263 (751)
                                           .+.....+...|.+++|+|.++.+++++  +.|+.|++||+++++....+         
T Consensus       268 ---------------------~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~---------  317 (420)
T 4gga_A          268 ---------------------PLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV---------  317 (420)
T ss_dssp             ---------------------CSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEE---------
T ss_pred             ---------------------eeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceee---------
Confidence                                 0112233667899999999888888775  47999999999886543221         


Q ss_pred             cccccccccccCCccccceEEEEEcCCCCEEEEEe--CCCcEEEEECCC
Q 004468          264 VNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSY--SGEHVYLMDVNH  310 (751)
Q Consensus       264 ~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s--~d~~I~lwdl~~  310 (751)
                                 ..+.  .+.++.|+|++++|++++  .|+.|+|||+.+
T Consensus       318 -----------~~~~--~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~  353 (420)
T 4gga_A          318 -----------DAHS--QVCSILWSPHYKELISGHGFAQNQLVIWKYPT  353 (420)
T ss_dssp             -----------ECSS--CEEEEEEETTTTEEEEEECTTTCCEEEEETTT
T ss_pred             -----------cccc--ceeeeeecCCCCeEEEEEecCCCEEEEEECCC
Confidence                       1122  489999999999999876  589999999766

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.97  E-value=9.8e-30  Score=273.61  Aligned_cols=213  Identities=15%  Similarity=0.176  Sum_probs=166.2

Q ss_pred             hhccccccEEeccCCCcEEEEEECCC---CCEEEEEeCCCcEEEEeCCC-CeEE-EEecccCCcceEEEEEecCCCCcEE
Q 004468           36 LVRRLSQERELEGHQGCVNAISWNSK---GSLLISGSDDTHINVWSYSS-RKLL-HSIETGHSANVFCTKFVPETSDELV  110 (751)
Q Consensus        36 ~i~~~~~~~~L~gH~~~V~~l~~s~d---g~~LaSgs~Dg~I~IWd~~~-~~~~-~~l~~~h~~~V~~v~fsp~s~~~~l  110 (751)
                      ....++.++.+.+|.+.|++|+|+|+   |++||+|+.||.|+|||+.+ +..+ ..+ .+|...|.+++|+|+  +++|
T Consensus        25 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~-~~h~~~v~~~~~~~~--~~~l  101 (368)
T 3mmy_A           25 NHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQ-QMHTGPVLDVCWSDD--GSKV  101 (368)
T ss_dssp             SSCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEE-EECSSCEEEEEECTT--SSEE
T ss_pred             CCCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEe-ccccCCEEEEEECcC--CCEE
Confidence            34566788899999999999999999   69999999999999999987 5555 445 799999999999998  8999


Q ss_pred             EEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEE--ecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCC
Q 004468          111 VSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAV--EVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGS  188 (751)
Q Consensus       111 ~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~--sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~  188 (751)
                      ++|+.|+.|++||+...          + ...+..|...|.+++|  +| ++.+|++++.||+|++||+++++..     
T Consensus       102 ~s~~~dg~v~iwd~~~~----------~-~~~~~~~~~~v~~~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~-----  164 (368)
T 3mmy_A          102 FTASCDKTAKMWDLSSN----------Q-AIQIAQHDAPVKTIHWIKAP-NYSCVMTGSWDKTLKFWDTRSSNPM-----  164 (368)
T ss_dssp             EEEETTSEEEEEETTTT----------E-EEEEEECSSCEEEEEEEECS-SCEEEEEEETTSEEEEECSSCSSCS-----
T ss_pred             EEEcCCCcEEEEEcCCC----------C-ceeeccccCceEEEEEEeCC-CCCEEEEccCCCcEEEEECCCCcEE-----
Confidence            99999999999999864          2 3346679999999999  77 6688999999999999999987632     


Q ss_pred             CCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCcccccc
Q 004468          189 SHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFC  268 (751)
Q Consensus       189 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~  268 (751)
                            ..+ .              ....+.++.+.+   ..+++++.|+.+++||++.......            ...
T Consensus       165 ------~~~-~--------------~~~~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~------------~~~  208 (368)
T 3mmy_A          165 ------MVL-Q--------------LPERCYCADVIY---PMAVVATAERGLIVYQLENQPSEFR------------RIE  208 (368)
T ss_dssp             ------EEE-E--------------CSSCEEEEEEET---TEEEEEEGGGCEEEEECSSSCEEEE------------ECC
T ss_pred             ------EEE-e--------------cCCCceEEEecC---CeeEEEeCCCcEEEEEeccccchhh------------hcc
Confidence                  111 0              112466666665   4888999999999999986432111            000


Q ss_pred             ccccccCCccccceEEEEEcCCCCE----EEEEeCCCcEEEEECCCC
Q 004468          269 PMHLSEHGRSSLHLTHVTFSPNGEE----VLLSYSGEHVYLMDVNHA  311 (751)
Q Consensus       269 ~~~~~~~g~~~~~vt~v~fspdg~~----Ll~~s~d~~I~lwdl~~~  311 (751)
                             ......+..+.+.+++..    +++++.|+.|++||+...
T Consensus       209 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~  248 (368)
T 3mmy_A          209 -------SPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPP  248 (368)
T ss_dssp             -------CSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCS
T ss_pred             -------ccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCC
Confidence                   001113566666665554    999999999999999873

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.97  E-value=1.6e-29  Score=280.87  Aligned_cols=200  Identities=14%  Similarity=0.292  Sum_probs=165.3

Q ss_pred             cEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEE
Q 004468           43 ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLF  122 (751)
Q Consensus        43 ~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vw  122 (751)
                      .....+|...|.|++|  ++++|++|+.||+|+|||+.+++.+..+ .+|.+.|.+++|  +  +.+|++|+.||+|++|
T Consensus       126 ~~~~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~-~~h~~~v~~l~~--~--~~~l~sg~~dg~i~vw  198 (435)
T 1p22_A          126 IHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRIL-TGHTGSVLCLQY--D--ERVIITGSSDSTVRVW  198 (435)
T ss_dssp             EECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEE-CCCSSCEEEEEC--C--SSEEEEEETTSCEEEE
T ss_pred             EecccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEE-cCCCCcEEEEEE--C--CCEEEEEcCCCeEEEE
Confidence            3344567788999988  7999999999999999999999999888 899999999999  4  6899999999999999


Q ss_pred             ECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEeccc
Q 004468          123 NLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRC  202 (751)
Q Consensus       123 d~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~  202 (751)
                      |+.++          +.+..+.+|...|.+++|++   .++++|+.||+|++||++++...           ..      
T Consensus       199 d~~~~----------~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~-----------~~------  248 (435)
T 1p22_A          199 DVNTG----------EMLNTLIHHCEAVLHLRFNN---GMMVTCSKDRSIAVWDMASPTDI-----------TL------  248 (435)
T ss_dssp             ESSSC----------CEEEEECCCCSCEEEEECCT---TEEEEEETTSCEEEEECSSSSCC-----------EE------
T ss_pred             ECCCC----------cEEEEEcCCCCcEEEEEEcC---CEEEEeeCCCcEEEEeCCCCCCc-----------ee------
Confidence            99865          55788899999999999964   58999999999999999886532           00      


Q ss_pred             CceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccce
Q 004468          203 GAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHL  282 (751)
Q Consensus       203 ~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v  282 (751)
                           .....+|...|.+++|+   +.++++|+.|+.|++||+++.+.+..+                    .+|.. .|
T Consensus       249 -----~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~vwd~~~~~~~~~~--------------------~~~~~-~v  299 (435)
T 1p22_A          249 -----RRVLVGHRAAVNVVDFD---DKYIVSASGDRTIKVWNTSTCEFVRTL--------------------NGHKR-GI  299 (435)
T ss_dssp             -----EEEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEETTTCCEEEEE--------------------ECCSS-CE
T ss_pred             -----eeEecCCCCcEEEEEeC---CCEEEEEeCCCeEEEEECCcCcEEEEE--------------------cCCCC-cE
Confidence                 01122366789999993   579999999999999999986543322                    22333 58


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004468          283 THVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (751)
Q Consensus       283 t~v~fspdg~~Ll~~s~d~~I~lwdl~~  310 (751)
                      +++.|  ++++|++++.|+.|++||+.+
T Consensus       300 ~~~~~--~~~~l~~g~~dg~i~iwd~~~  325 (435)
T 1p22_A          300 ACLQY--RDRLVVSGSSDNTIRLWDIEC  325 (435)
T ss_dssp             EEEEE--ETTEEEEEETTSCEEEEETTT
T ss_pred             EEEEe--CCCEEEEEeCCCeEEEEECCC
Confidence            89988  578999999999999999877

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.97  E-value=2.2e-30  Score=293.34  Aligned_cols=228  Identities=14%  Similarity=0.104  Sum_probs=176.8

Q ss_pred             cccccccccchhhhccccc--cEEeccCCCcEEEEEECCC------CCEEEEEeCCCcEEEEeCCCCeE-----------
Q 004468           24 PDVNHSLQMHSSLVRRLSQ--ERELEGHQGCVNAISWNSK------GSLLISGSDDTHINVWSYSSRKL-----------   84 (751)
Q Consensus        24 ~~~~~~l~~~~~~i~~~~~--~~~L~gH~~~V~~l~~s~d------g~~LaSgs~Dg~I~IWd~~~~~~-----------   84 (751)
                      ...+..+++|+....++..  ..++.+|.+.|++|+|+|+      +.+||||+.||+|+|||+.++..           
T Consensus       179 ~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p  258 (524)
T 2j04_B          179 EKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKP  258 (524)
T ss_dssp             ---CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSC
T ss_pred             CCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCc
Confidence            4567788899854433322  3567889999999999996      57999999999999999976532           


Q ss_pred             EEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEE--EEecCCC-C
Q 004468           85 LHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKL--AVEVGNP-H  161 (751)
Q Consensus        85 ~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l--~~sp~~~-~  161 (751)
                      ...+ .+|...|.+++|+|+   ..|++|+.||+|++||+..+.         .+...+.+|...|.+|  +|+| ++ +
T Consensus       259 ~~~l-~~h~~~v~sv~~s~~---~~lasgs~DgtV~lWD~~~~~---------~~~~~~~~H~~~V~sv~~~~s~-~g~~  324 (524)
T 2j04_B          259 SLTL-SLADSLITTFDFLSP---TTVVCGFKNGFVAEFDLTDPE---------VPSFYDQVHDSYILSVSTAYSD-FEDT  324 (524)
T ss_dssp             SEEE-CCTTTCEEEEEESSS---SEEEEEETTSEEEEEETTBCS---------SCSEEEECSSSCEEEEEEECCT-TSCC
T ss_pred             eEEE-EcCCCCEEEEEecCC---CeEEEEeCCCEEEEEECCCCC---------CceEEeecccccEEEEEEEcCC-CCCe
Confidence            1245 789999999999986   489999999999999998541         3456788999999999  4566 55 8


Q ss_pred             EEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEE
Q 004468          162 VVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFAR  241 (751)
Q Consensus       162 ~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~Ir  241 (751)
                      +|+|||.||+|++||+++++..           ..+....            ....|.+++|+|+ +..+++++.|++|+
T Consensus       325 ~laS~S~D~tvklWD~~~~~~~-----------~~~~~~~------------~~~~v~~v~fsp~-~~~l~s~~~d~tv~  380 (524)
T 2j04_B          325 VVSTVAVDGYFYIFNPKDIATT-----------KTTVSRF------------RGSNLVPVVYCPQ-IYSYIYSDGASSLR  380 (524)
T ss_dssp             EEEEEETTSEEEEECGGGHHHH-----------CEEEEEC------------SCCSCCCEEEETT-TTEEEEECSSSEEE
T ss_pred             EEEEeccCCeEEEEECCCCCcc-----------ccccccc------------ccCcccceEeCCC-cCeEEEeCCCCcEE
Confidence            9999999999999999876421           1111000            1124788999995 77899999999999


Q ss_pred             EEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004468          242 LYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (751)
Q Consensus       242 iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~  310 (751)
                      +||++....+..             +       .+|.. .|++|+|+|+|++|++|+.|++|+|||+..
T Consensus       381 lwd~~~~~~~~~-------------l-------~gH~~-~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~  428 (524)
T 2j04_B          381 AVPSRAAFAVHP-------------L-------VSRET-TITAIGVSRLHPMVLAGSADGSLIITNAAR  428 (524)
T ss_dssp             EEETTCTTCCEE-------------E-------EECSS-CEEEEECCSSCCBCEEEETTTEEECCBSCS
T ss_pred             EEECccccccee-------------e-------ecCCC-ceEEEEeCCCCCeEEEEECCCEEEEEechH
Confidence            999987643221             1       23544 699999999999999999999999999765

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.97  E-value=9.1e-29  Score=276.63  Aligned_cols=229  Identities=19%  Similarity=0.229  Sum_probs=183.5

Q ss_pred             cccccccchhhhccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCC
Q 004468           26 VNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPET  105 (751)
Q Consensus        26 ~~~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s  105 (751)
                      .+..+++|+  +.+.+++.++.+|.+.|++++|++++ +|++|+.||+|+|||+.+++.+..+ .+|...|.+++|+|..
T Consensus       140 ~dg~i~vwd--~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~-~~h~~~v~~l~~~~~~  215 (464)
T 3v7d_B          140 DDKMIRVYD--SINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVF-EGHNSTVRCLDIVEYK  215 (464)
T ss_dssp             TTSCEEEEE--TTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEEEESS
T ss_pred             CCCcEEEEE--CCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEE-CCCCCccEEEEEecCC
Confidence            356677776  35567889999999999999999988 9999999999999999999999888 7999999999999754


Q ss_pred             CCcEEEEEECCCcEEEEECCCCCCCCCCC-------------CCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcE
Q 004468          106 SDELVVSGAGDAEVRLFNLSRFSGRGLDD-------------NAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTL  172 (751)
Q Consensus       106 ~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~-------------~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I  172 (751)
                      ++.+|++|+.|++|++||+..........             .....+..+.+|...|.++.  + ++.++++++.||+|
T Consensus       216 ~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~-~~~~l~~~~~d~~i  292 (464)
T 3v7d_B          216 NIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVS--G-HGNIVVSGSYDNTL  292 (464)
T ss_dssp             SCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEE--E-ETTEEEEEETTSCE
T ss_pred             CCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEc--C-CCCEEEEEeCCCeE
Confidence            47899999999999999998643211000             00012556788999998874  4 56899999999999


Q ss_pred             EEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCcc
Q 004468          173 RQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLT  252 (751)
Q Consensus       173 ~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~  252 (751)
                      ++||+++++..                         .....|...|.+++|+| ++.++++|+.|+.|++||+++++.+.
T Consensus       293 ~vwd~~~~~~~-------------------------~~~~~~~~~v~~~~~~~-~~~~l~sg~~dg~i~vwd~~~~~~~~  346 (464)
T 3v7d_B          293 IVWDVAQMKCL-------------------------YILSGHTDRIYSTIYDH-ERKRCISASMDTTIRIWDLENGELMY  346 (464)
T ss_dssp             EEEETTTTEEE-------------------------EEECCCSSCEEEEEEET-TTTEEEEEETTSCEEEEETTTTEEEE
T ss_pred             EEEECCCCcEE-------------------------EEecCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCcEEE
Confidence            99999876421                         11233677899999999 47899999999999999998765433


Q ss_pred             ccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004468          253 SCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (751)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~  310 (751)
                      .+                    .+|.. .|++++|+  +++|++++.|+.|++||+.+
T Consensus       347 ~~--------------------~~h~~-~v~~~~~~--~~~l~s~s~dg~v~vwd~~~  381 (464)
T 3v7d_B          347 TL--------------------QGHTA-LVGLLRLS--DKFLVSAAADGSIRGWDAND  381 (464)
T ss_dssp             EE--------------------CCCSS-CEEEEEEC--SSEEEEEETTSEEEEEETTT
T ss_pred             EE--------------------eCCCC-cEEEEEEc--CCEEEEEeCCCcEEEEECCC
Confidence            22                    23444 59999997  58999999999999999887

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.97  E-value=1.2e-28  Score=261.90  Aligned_cols=228  Identities=17%  Similarity=0.223  Sum_probs=181.3

Q ss_pred             EeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEec----ccCCcceEEEEEecCCCCcEEEEEECCCcEE
Q 004468           45 ELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIE----TGHSANVFCTKFVPETSDELVVSGAGDAEVR  120 (751)
Q Consensus        45 ~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~----~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~  120 (751)
                      .+.+|.+.|++++|+|++++|++++ ||.|+|||+.++.....+.    .+|...|.+++|+|+  +++|++++.|+.|+
T Consensus        46 ~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~  122 (337)
T 1gxr_A           46 NTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPD--GCTLIVGGEASTLS  122 (337)
T ss_dssp             EEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTT--SSEEEEEESSSEEE
T ss_pred             eeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCC--CCEEEEEcCCCcEE
Confidence            3347999999999999999999999 9999999998765332221    279999999999998  79999999999999


Q ss_pred             EEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEec
Q 004468          121 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDL  200 (751)
Q Consensus       121 vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~  200 (751)
                      +||+.....        .....+..|...|.+++|+| ++.+|++++.||.|++||+++++..                 
T Consensus       123 ~~d~~~~~~--------~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~v~~~d~~~~~~~-----------------  176 (337)
T 1gxr_A          123 IWDLAAPTP--------RIKAELTSSAPACYALAISP-DSKVCFSCCSDGNIAVWDLHNQTLV-----------------  176 (337)
T ss_dssp             EEECCCC----------EEEEEEECSSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEE-----------------
T ss_pred             EEECCCCCc--------ceeeecccCCCceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCcee-----------------
Confidence            999986421        24667888999999999999 6789999999999999999876421                 


Q ss_pred             ccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCcccc
Q 004468          201 RCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSL  280 (751)
Q Consensus       201 ~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  280 (751)
                              .....|...+.+++|+| ++.+|++++.|+.|++||+++.+.+..+                     .+ ..
T Consensus       177 --------~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~---------------------~~-~~  225 (337)
T 1gxr_A          177 --------RQFQGHTDGASCIDISN-DGTKLWTGGLDNTVRSWDLREGRQLQQH---------------------DF-TS  225 (337)
T ss_dssp             --------EEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEE---------------------EC-SS
T ss_pred             --------eeeecccCceEEEEECC-CCCEEEEEecCCcEEEEECCCCceEeee---------------------cC-CC
Confidence                    11123567899999999 4789999999999999999876533221                     01 12


Q ss_pred             ceEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcceeeeecCCCceeEEeCCCC
Q 004468          281 HLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTL  333 (751)
Q Consensus       281 ~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp~~  333 (751)
                      .+++++|+|++++|++++.++.|++||+.+.. ......+...+..++|+|+.
T Consensus       226 ~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~  277 (337)
T 1gxr_A          226 QIFSLGYCPTGEWLAVGMESSNVEVLHVNKPD-KYQLHLHESCVLSLKFAYCG  277 (337)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTSSC-EEEECCCSSCEEEEEECTTS
T ss_pred             ceEEEEECCCCCEEEEEcCCCcEEEEECCCCC-eEEEcCCccceeEEEECCCC
Confidence            59999999999999999999999999999854 23334445556666666643

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.3e-28  Score=270.30  Aligned_cols=225  Identities=12%  Similarity=0.168  Sum_probs=183.8

Q ss_pred             CCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCC
Q 004468           49 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFS  128 (751)
Q Consensus        49 H~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~  128 (751)
                      |.+.|++++|+|+|++||+|+.||.|+||| .++..+..+ .+|...|.+++|+|+  +++|++++.|+.|++||+..+ 
T Consensus       107 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~-~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~iwd~~~~-  181 (425)
T 1r5m_A          107 TTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVL-NFHRAPIVSVKWNKD--GTHIISMDVENVTILWNVISG-  181 (425)
T ss_dssp             -CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEE-CCCCSCEEEEEECTT--SSEEEEEETTCCEEEEETTTT-
T ss_pred             CCCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeec-cCCCccEEEEEECCC--CCEEEEEecCCeEEEEECCCC-
Confidence            788999999999999999999999999999 667788888 799999999999999  799999999999999999864 


Q ss_pred             CCCCCCCCCCCceeecccCCc---------------eeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCcc
Q 004468          129 GRGLDDNAITPSALYQCHTRR---------------VKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQEC  193 (751)
Q Consensus       129 ~~~~~~~~~~~~~~~~~h~~~---------------V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~  193 (751)
                               +.+..+..|...               |.+++|+| + ..+++++.||.|++||+++++..          
T Consensus       182 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~g~i~~~d~~~~~~~----------  240 (425)
T 1r5m_A          182 ---------TVMQHFELKETGGSSINAENHSGDGSLGVDVEWVD-D-DKFVIPGPKGAIFVYQITEKTPT----------  240 (425)
T ss_dssp             ---------EEEEEECCC---------------CCCBSCCEEEE-T-TEEEEECGGGCEEEEETTCSSCS----------
T ss_pred             ---------cEEEEeeccccCccceeeccccCCcceeeEEEEcC-C-CEEEEEcCCCeEEEEEcCCCcee----------
Confidence                     446666667666               99999998 4 46889999999999999986532          


Q ss_pred             ceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccc
Q 004468          194 RNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLS  273 (751)
Q Consensus       194 ~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (751)
                                     .....+...|.+++|+|+ +.+|++++.|+.|++||+++.+.+..+                   
T Consensus       241 ---------------~~~~~~~~~i~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~-------------------  285 (425)
T 1r5m_A          241 ---------------GKLIGHHGPISVLEFNDT-NKLLLSASDDGTLRIWHGGNGNSQNCF-------------------  285 (425)
T ss_dssp             ---------------EEECCCSSCEEEEEEETT-TTEEEEEETTSCEEEECSSSBSCSEEE-------------------
T ss_pred             ---------------eeeccCCCceEEEEECCC-CCEEEEEcCCCEEEEEECCCCccceEe-------------------
Confidence                           111235678999999995 789999999999999999876543322                   


Q ss_pred             cCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcceeeeecCCCceeEEeCCCCCCcc
Q 004468          274 EHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLE  337 (751)
Q Consensus       274 ~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp~~~~~~  337 (751)
                       .+|.. .|++++|+|++ +|++++.|+.|++||+.++........+...+..++|+|+.+.+.
T Consensus       286 -~~~~~-~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~  346 (425)
T 1r5m_A          286 -YGHSQ-SIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYA  346 (425)
T ss_dssp             -CCCSS-CEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEE
T ss_pred             -cCCCc-cEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEE
Confidence             12333 59999999999 999999999999999998765555556677888889998765443

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.97  E-value=2.4e-28  Score=258.24  Aligned_cols=255  Identities=22%  Similarity=0.312  Sum_probs=205.8

Q ss_pred             cccccccchhhhccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCC
Q 004468           26 VNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPET  105 (751)
Q Consensus        26 ~~~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s  105 (751)
                      .+..+++|+..  ..+....+.+|...|++++|+|++++|++|+.|+.|+|||+.+++.+..+ .+|...|.+++|+|+ 
T Consensus        43 ~dg~i~iw~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~-~~~~~~v~~~~~~~~-  118 (312)
T 4ery_A           43 ADKLIKIWGAY--DGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYVFCCNFNPQ-  118 (312)
T ss_dssp             TTSCEEEEETT--TCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-ECCSSCEEEEEECSS-
T ss_pred             CCCeEEEEeCC--CcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEE-cCCCCCEEEEEEcCC-
Confidence            45677787643  45567889999999999999999999999999999999999999999888 899999999999999 


Q ss_pred             CCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCC
Q 004468          106 SDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPP  185 (751)
Q Consensus       106 ~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~  185 (751)
                       +.+|++|+.|+.|++||+...          +++..+..|...|.+++|+| ++.+|++++.||.|++||+++++..  
T Consensus       119 -~~~l~s~~~d~~i~iwd~~~~----------~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~--  184 (312)
T 4ery_A          119 -SNLIVSGSFDESVRIWDVKTG----------KCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTASGQCL--  184 (312)
T ss_dssp             -SSEEEEEETTSCEEEEETTTC----------CEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEE--
T ss_pred             -CCEEEEEeCCCcEEEEECCCC----------EEEEEecCCCCcEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCcee--
Confidence             799999999999999999864          45778889999999999999 6789999999999999999886521  


Q ss_pred             CCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccc
Q 004468          186 AGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVN  265 (751)
Q Consensus       186 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~  265 (751)
                               ..+             ...+...+.+++|+|+ +.+|++++.|+.|++||+++.+.+..+..         
T Consensus       185 ---------~~~-------------~~~~~~~~~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~---------  232 (312)
T 4ery_A          185 ---------KTL-------------IDDDNPPVSFVKFSPN-GKYILAATLDNTLKLWDYSKGKCLKTYTG---------  232 (312)
T ss_dssp             ---------EEE-------------CCSSCCCEEEEEECTT-SSEEEEEETTTEEEEEETTTTEEEEEECS---------
T ss_pred             ---------eEE-------------eccCCCceEEEEECCC-CCEEEEEcCCCeEEEEECCCCcEEEEEEe---------
Confidence                     000             1123457889999994 78999999999999999987654332210         


Q ss_pred             cccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcceeeeecCCCceeEEeCCCCCCcccC
Q 004468          266 YFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQ  339 (751)
Q Consensus       266 ~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~  339 (751)
                           +.    .....+......+++.+|++++.|+.|++||+.++........+...+..++|+|..+.+...
T Consensus       233 -----~~----~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~  297 (312)
T 4ery_A          233 -----HK----NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASA  297 (312)
T ss_dssp             -----SC----CSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEE
T ss_pred             -----cC----CceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEE
Confidence                 00    011113333344688999999999999999999977666666677788889999987765543

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.97  E-value=1.6e-28  Score=289.62  Aligned_cols=227  Identities=20%  Similarity=0.237  Sum_probs=181.6

Q ss_pred             cccccccchhhhcc---ccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEe
Q 004468           26 VNHSLQMHSSLVRR---LSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV  102 (751)
Q Consensus        26 ~~~~l~~~~~~i~~---~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fs  102 (751)
                      .+..+++|+.....   ....+.|.+|.+.|++++|+|+|++|+||+.|++|+|||+.++..+..+ .+|...|.+++|+
T Consensus       403 ~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~-~~h~~~v~~~~~s  481 (694)
T 3dm0_A          403 RDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRF-VGHTKDVLSVAFS  481 (694)
T ss_dssp             TTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE-ECCSSCEEEEEEC
T ss_pred             CCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEE-eCCCCCEEEEEEe
Confidence            46778888643221   2345789999999999999999999999999999999999999999888 8999999999999


Q ss_pred             cCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCC-CCEEEEEeCCCcEEEEecCCCC
Q 004468          103 PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGN-PHVVWSASEDGTLRQHDFRQGS  181 (751)
Q Consensus       103 p~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~~~l~s~s~Dg~I~iwDlr~~~  181 (751)
                      |+  +.+|+||+.|++|+|||+......       .......+|...|.+++|+|+. ..+|++++.||+|++||+++.+
T Consensus       482 ~~--~~~l~s~s~D~~i~iwd~~~~~~~-------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~  552 (694)
T 3dm0_A          482 LD--NRQIVSASRDRTIKLWNTLGECKY-------TISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCK  552 (694)
T ss_dssp             TT--SSCEEEEETTSCEEEECTTSCEEE-------EECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCC
T ss_pred             CC--CCEEEEEeCCCEEEEEECCCCcce-------eeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCc
Confidence            99  799999999999999998642100       0112235799999999999954 2589999999999999998764


Q ss_pred             CCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCC
Q 004468          182 SCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPP  261 (751)
Q Consensus       182 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~  261 (751)
                      ..                         .....|...|++++|+| ++.+|++|+.|+.|+|||+++.+.+..+       
T Consensus       553 ~~-------------------------~~~~~h~~~v~~v~~sp-dg~~l~sg~~Dg~i~iwd~~~~~~~~~~-------  599 (694)
T 3dm0_A          553 LR-------------------------STLAGHTGYVSTVAVSP-DGSLCASGGKDGVVLLWDLAEGKKLYSL-------  599 (694)
T ss_dssp             EE-------------------------EEECCCSSCEEEEEECT-TSSEEEEEETTSBCEEEETTTTEEEECC-------
T ss_pred             EE-------------------------EEEcCCCCCEEEEEEeC-CCCEEEEEeCCCeEEEEECCCCceEEEe-------
Confidence            21                         11234678899999999 5799999999999999999876543221       


Q ss_pred             CccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 004468          262 PCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (751)
Q Consensus       262 ~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~  311 (751)
                                   ..+  ..|++++|+|++.+|++++ ++.|+|||+.++
T Consensus       600 -------------~~~--~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~  633 (694)
T 3dm0_A          600 -------------EAN--SVIHALCFSPNRYWLCAAT-EHGIKIWDLESK  633 (694)
T ss_dssp             -------------BCS--SCEEEEEECSSSSEEEEEE-TTEEEEEETTTT
T ss_pred             -------------cCC--CcEEEEEEcCCCcEEEEEc-CCCEEEEECCCC
Confidence                         111  2499999999998776654 567999999884

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.96  E-value=3.3e-28  Score=267.14  Aligned_cols=220  Identities=16%  Similarity=0.264  Sum_probs=180.9

Q ss_pred             ccccccchhhhccccccEEecc-CCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCC
Q 004468           27 NHSLQMHSSLVRRLSQERELEG-HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPET  105 (751)
Q Consensus        27 ~~~l~~~~~~i~~~~~~~~L~g-H~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s  105 (751)
                      +..+++|+...  .+....+.. |.+.|++++|+|+|++||+|+.||.|+|||+.+++.+..+ .+|...|.+++|.   
T Consensus       112 d~~v~lw~~~~--~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~~---  185 (401)
T 4aez_A          112 ERNVYVWNADS--GSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTM-AGHQARVGCLSWN---  185 (401)
T ss_dssp             TTEEEEEETTT--CCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEE-CCCSSCEEEEEEE---
T ss_pred             CCeEEEeeCCC--CcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEe-cCCCCceEEEEEC---
Confidence            45677776433  334455554 8999999999999999999999999999999999999988 7999999999994   


Q ss_pred             CCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCC
Q 004468          106 SDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPP  185 (751)
Q Consensus       106 ~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~  185 (751)
                       +.+|++|+.|+.|++||+....         ..+..+.+|...|.+++|+| ++.+|++|+.||+|++||++++...  
T Consensus       186 -~~~l~~~~~dg~i~i~d~~~~~---------~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~v~iwd~~~~~~~--  252 (401)
T 4aez_A          186 -RHVLSSGSRSGAIHHHDVRIAN---------HQIGTLQGHSSEVCGLAWRS-DGLQLASGGNDNVVQIWDARSSIPK--  252 (401)
T ss_dssp             -TTEEEEEETTSEEEEEETTSSS---------CEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTCSSEE--
T ss_pred             -CCEEEEEcCCCCEEEEecccCc---------ceeeEEcCCCCCeeEEEEcC-CCCEEEEEeCCCeEEEccCCCCCcc--
Confidence             4699999999999999998532         45778889999999999999 7789999999999999999886421  


Q ss_pred             CCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEe--CCCeEEEEeCCCCCCccccCCCCCCCCc
Q 004468          186 AGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGG--SDAFARLYDRRMLPPLTSCQKRMSPPPC  263 (751)
Q Consensus       186 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs--~D~~IriwD~~~~~~~~~~~~~~~~~~~  263 (751)
                                             .....+...|.+++|+|++..++++|+  .|+.|++||+++.+.+..+.        
T Consensus       253 -----------------------~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~--------  301 (401)
T 4aez_A          253 -----------------------FTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD--------  301 (401)
T ss_dssp             -----------------------EEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE--------
T ss_pred             -----------------------EEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe--------
Confidence                                   111236678999999998778888876  79999999999765433221        


Q ss_pred             cccccccccccCCccccceEEEEEcCCCCEEEEEe--CCCcEEEEECCC
Q 004468          264 VNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSY--SGEHVYLMDVNH  310 (751)
Q Consensus       264 ~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s--~d~~I~lwdl~~  310 (751)
                                   + ...|++++|+|++++|++++  .|+.|++||+.+
T Consensus       302 -------------~-~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~  336 (401)
T 4aez_A          302 -------------A-GSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSS  336 (401)
T ss_dssp             -------------C-SSCEEEEEECSSSSEEEEEECTTTCEEEEEEEET
T ss_pred             -------------C-CCcEEEEEECCCCCeEEEEeecCCCcEEEEecCC
Confidence                         1 12599999999999999954  799999999766

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.96  E-value=8.3e-29  Score=268.75  Aligned_cols=247  Identities=11%  Similarity=0.086  Sum_probs=178.4

Q ss_pred             cccccccchhhhccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCe---EEEEecccCCcceEEEEEe
Q 004468           26 VNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK---LLHSIETGHSANVFCTKFV  102 (751)
Q Consensus        26 ~~~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~---~~~~l~~~h~~~V~~v~fs  102 (751)
                      .+..+++|+......++.++|.+|.+.|++++|+|+|++||+|+.|++|+|||+.++.   ....+ .+|...|.+++|+
T Consensus        31 ~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~-~~~~~~v~~~~~~  109 (377)
T 3dwl_C           31 ATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVL-LRLNRAATFVRWS  109 (377)
T ss_dssp             SSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEEC-CCCSSCEEEEECC
T ss_pred             CCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEe-cccCCceEEEEEC
Confidence            4677888886655447888999999999999999999999999999999999998876   45555 7899999999999


Q ss_pred             cCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecc-cCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCC
Q 004468          103 PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQC-HTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGS  181 (751)
Q Consensus       103 p~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~-h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~  181 (751)
                      |+  +++|++|+.|+.|++||+.....       ......+.. |...|.+++|+| ++.+|++++.||+|++||++...
T Consensus       110 ~~--~~~l~~~~~d~~i~iwd~~~~~~-------~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~  179 (377)
T 3dwl_C          110 PN--EDKFAVGSGARVISVCYFEQEND-------WWVSKHLKRPLRSTILSLDWHP-NNVLLAAGCADRKAYVLSAYVRD  179 (377)
T ss_dssp             TT--SSCCEEEESSSCEEECCC------------CCCCEEECSSCCSCEEEEEECT-TSSEEEEEESSSCEEEEEECCSS
T ss_pred             CC--CCEEEEEecCCeEEEEEECCccc-------ceeeeEeecccCCCeEEEEEcC-CCCEEEEEeCCCEEEEEEEEecc
Confidence            98  79999999999999999986421       123667777 999999999999 67899999999999999997654


Q ss_pred             CCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCC
Q 004468          182 SCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPP  261 (751)
Q Consensus       182 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~  261 (751)
                      ...........       ........+... .|...|++++|+|+ +.+|++++.|+.|++||+++.+....        
T Consensus       180 ~~~~~~~~~~~-------~~~~~~~~~~~~-~~~~~v~~~~~sp~-~~~l~~~~~d~~i~iwd~~~~~~~~~--------  242 (377)
T 3dwl_C          180 VDAKPEASVWG-------SRLPFNTVCAEY-PSGGWVHAVGFSPS-GNALAYAGHDSSVTIAYPSAPEQPPR--------  242 (377)
T ss_dssp             CC-CCCSCSSC-------SCCCEEEEEECC-CCSSSEEEEEECTT-SSCEEEEETTTEEC-CEECSTTSCEE--------
T ss_pred             cCCCccccccc-------cccchhhhhhcc-cCCceEEEEEECCC-CCEEEEEeCCCcEEEEECCCCCCcce--------
Confidence            22111000000       000001112222 57788999999994 78999999999999999997653100        


Q ss_pred             CccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004468          262 PCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (751)
Q Consensus       262 ~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~  310 (751)
                       ++..+       .+|.. .|++++|+|+|++|++++.++.+ +|+...
T Consensus       243 -~~~~~-------~~~~~-~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~  281 (377)
T 3dwl_C          243 -ALITV-------KLSQL-PLRSLLWANESAIVAAGYNYSPI-LLQGNE  281 (377)
T ss_dssp             -ECCCE-------ECSSS-CEEEEEEEETTEEEEEESSSSEE-EECCCC
T ss_pred             -eeEee-------cCCCC-ceEEEEEcCCCCEEEEEcCCcEE-EEEeCC
Confidence             01111       23333 59999999999998888655555 777664

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.96  E-value=9.2e-28  Score=253.29  Aligned_cols=227  Identities=16%  Similarity=0.230  Sum_probs=179.3

Q ss_pred             cccccccchhhhccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCC
Q 004468           26 VNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPET  105 (751)
Q Consensus        26 ~~~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s  105 (751)
                      .++++++|+....+......+.+|...|++|+|+|+|++||||+.||+|+|||+.+++.+..+ .+|...+.++.+.   
T Consensus        43 ~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~-~~h~~~~~~~~~~---  118 (318)
T 4ggc_A           43 LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM-TSHSARVGSLSWN---  118 (318)
T ss_dssp             ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE-ECCSSCEEEEEEE---
T ss_pred             eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEe-cCccceEEEeecC---
Confidence            478899998554443333445678899999999999999999999999999999999999998 8999988887665   


Q ss_pred             CCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCC
Q 004468          106 SDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPP  185 (751)
Q Consensus       106 ~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~  185 (751)
                       +.++++|+.++.+++|+.....         ..+..+.+|...+..+.+.+ ++.+|++++.||+|++||+++++....
T Consensus       119 -~~~l~s~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~  187 (318)
T 4ggc_A          119 -SYILSSGSRSGHIHHHDVRVAE---------HHVATLSGHSQEVCGLRWAP-DGRHLASGGNDNLVNVWPSAPGEGGWV  187 (318)
T ss_dssp             -TTEEEEEETTSEEEEEETTSSS---------CEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEESSCBTTBSC
T ss_pred             -CCEEEEEecCCceEeeecCCCc---------eeEEEEcCccCceEEEEEcC-CCCEEEEEecCcceeEEECCCCccccc
Confidence             4689999999999999998642         44677889999999999999 678999999999999999998753211


Q ss_pred             CCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEE--EEeCCCeEEEEeCCCCCCccccCCCCCCCCc
Q 004468          186 AGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLL--VGGSDAFARLYDRRMLPPLTSCQKRMSPPPC  263 (751)
Q Consensus       186 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~--sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~  263 (751)
                      .                     ......+...|.++.++|.++..+.  +++.++.|++||.+........         
T Consensus       188 ~---------------------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~---------  237 (318)
T 4ggc_A          188 P---------------------LQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV---------  237 (318)
T ss_dssp             C---------------------SEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEE---------
T ss_pred             c---------------------eeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccc---------
Confidence            0                     1111225567899999997766654  5667899999999875432111         


Q ss_pred             cccccccccccCCccccceEEEEEcCCCCEEEEEe--CCCcEEEEECCC
Q 004468          264 VNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSY--SGEHVYLMDVNH  310 (751)
Q Consensus       264 ~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s--~d~~I~lwdl~~  310 (751)
                                  .+ ...+..+.|+|+++++++++  .|+.|+|||+.+
T Consensus       238 ------------~~-~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~  273 (318)
T 4ggc_A          238 ------------DA-HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPT  273 (318)
T ss_dssp             ------------EC-SSCEEEEEEETTTTEEEEEECTTTCCEEEEETTT
T ss_pred             ------------cc-eeeeeeeeecccccceEEEEEcCCCEEEEEECCC
Confidence                        11 12489999999999988765  589999999876

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.96  E-value=6.2e-29  Score=295.43  Aligned_cols=220  Identities=15%  Similarity=0.250  Sum_probs=175.5

Q ss_pred             cEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCC--CCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEE
Q 004468           43 ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYS--SRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR  120 (751)
Q Consensus        43 ~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~--~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~  120 (751)
                      +..+.||.+.|++++|+|+|++||+|+.||+|+|||+.  +++.+..+ .+|.+.|.+++|+|+.++++|++|+.||+|+
T Consensus         2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l-~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~   80 (753)
T 3jro_A            2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTL-TGHEGPVWRVDWAHPKFGTILASCSYDGKVL   80 (753)
T ss_dssp             ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEE-CCCSSCEEEEEECCTTSCSEEEEEETTSCEE
T ss_pred             eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceec-cCCcCceEEEEecCCCCCCEEEEEeCCCeEE
Confidence            46789999999999999999999999999999999987  55667777 8999999999999875568999999999999


Q ss_pred             EEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCC-CCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEe
Q 004468          121 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGN-PHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD  199 (751)
Q Consensus       121 vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~  199 (751)
                      +||+..+..        ..+..+.+|...|++++|+|+. +.+|++|+.||+|++||++++.....          .   
T Consensus        81 vwd~~~~~~--------~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~----------~---  139 (753)
T 3jro_A           81 IWKEENGRW--------SQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSP----------I---  139 (753)
T ss_dssp             EEEEETTEE--------EEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCC----------E---
T ss_pred             EEECCCCcc--------cccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcce----------e---
Confidence            999986421        2567788999999999999942 78999999999999999998742210          0   


Q ss_pred             cccCceecccCCCCCccceEEEEEeCC------------CCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccc
Q 004468          200 LRCGAKRSLADPPKQTLSLKSCDISST------------RPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYF  267 (751)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~v~~i~~sp~------------~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~  267 (751)
                                ....+...|.+++|+|.            ++.++++|+.|+.|++||+++......         +...+
T Consensus       140 ----------~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~---------~~~~~  200 (753)
T 3jro_A          140 ----------IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYV---------LESTL  200 (753)
T ss_dssp             ----------EEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEE---------EEEEE
T ss_pred             ----------EeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccce---------eeeee
Confidence                      11235678999999995            478999999999999999987542211         11111


Q ss_pred             cccccccCCccccceEEEEEcCC---CCEEEEEeCCCcEEEEECCCC
Q 004468          268 CPMHLSEHGRSSLHLTHVTFSPN---GEEVLLSYSGEHVYLMDVNHA  311 (751)
Q Consensus       268 ~~~~~~~~g~~~~~vt~v~fspd---g~~Ll~~s~d~~I~lwdl~~~  311 (751)
                             .+|.. .|++++|+|+   +++|++++.|+.|++||+.++
T Consensus       201 -------~~h~~-~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~  239 (753)
T 3jro_A          201 -------EGHSD-WVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNE  239 (753)
T ss_dssp             -------CCCSS-CEEEEEECCCCSSSEEEEEEESSSCEEEEEESSS
T ss_pred             -------cCCCC-cEEEEEeccCCCCCCEEEEEecCCEEEEecCCCC
Confidence                   23444 6999999999   899999999999999998873

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.96  E-value=1.5e-28  Score=273.14  Aligned_cols=189  Identities=14%  Similarity=0.127  Sum_probs=155.7

Q ss_pred             cccccccchhhhccccccEEeccCCCcEEEEEECC-CCCEEEEEeCCCcEEEEeCCCCeEEEEeccc--CCcceEEEEEe
Q 004468           26 VNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNS-KGSLLISGSDDTHINVWSYSSRKLLHSIETG--HSANVFCTKFV  102 (751)
Q Consensus        26 ~~~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~-dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~--h~~~V~~v~fs  102 (751)
                      .+..+++|+...........+.+|.+.|++|+|+| ++++|+|||.||+|+|||+.++...... ..  +...+.+++|+
T Consensus       140 ~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~  218 (435)
T 4e54_B          140 KGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFA-SSDTINIWFCSLDVS  218 (435)
T ss_dssp             TTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEE-CCSSCSCCCCCEEEE
T ss_pred             CCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEe-ccCCCCccEEEEEEC
Confidence            46778888766666666777889999999999998 7899999999999999999865443332 33  34567899999


Q ss_pred             cCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCC
Q 004468          103 PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSS  182 (751)
Q Consensus       103 p~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~  182 (751)
                      |+  +.+|++|+.|+.|++||+..           +.+..+.+|...|.+++|+|++..+|++|+.|++|++||+++.+.
T Consensus       219 ~~--~~~l~~g~~dg~i~~wd~~~-----------~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~  285 (435)
T 4e54_B          219 AS--SRMVVTGDNVGNVILLNMDG-----------KELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRG  285 (435)
T ss_dssp             TT--TTEEEEECSSSBEEEEESSS-----------CBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCS
T ss_pred             CC--CCEEEEEeCCCcEeeeccCc-----------ceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccc
Confidence            99  89999999999999999974           346778899999999999997778999999999999999998653


Q ss_pred             CCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCc
Q 004468          183 CPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPL  251 (751)
Q Consensus       183 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~  251 (751)
                      ...                      +.....|...|++++|+| ++.+|++|+.|+.|+|||+++....
T Consensus       286 ~~~----------------------~~~~~~h~~~v~~~~~sp-dg~~l~s~~~D~~i~iwd~~~~~~~  331 (435)
T 4e54_B          286 KAS----------------------FLYSLPHRHPVNAACFSP-DGARLLTTDQKSEIRVYSASQWDCP  331 (435)
T ss_dssp             SSC----------------------CSBCCBCSSCEEECCBCT-TSSEEEEEESSSCEEEEESSSSSSE
T ss_pred             cce----------------------EEEeeeccccccceeECC-CCCeeEEEcCCCEEEEEECCCCccc
Confidence            211                      112234678899999999 5799999999999999999986543

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.96  E-value=1.3e-28  Score=264.90  Aligned_cols=258  Identities=13%  Similarity=0.124  Sum_probs=183.0

Q ss_pred             ccccccchhhhccccccEEecc-----CCCcEEEEEECCC----CCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceE
Q 004468           27 NHSLQMHSSLVRRLSQERELEG-----HQGCVNAISWNSK----GSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVF   97 (751)
Q Consensus        27 ~~~l~~~~~~i~~~~~~~~L~g-----H~~~V~~l~~s~d----g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~   97 (751)
                      +..+++|+..  +.+.+..+..     |.+.|++++|+|+    |++|++|+.||.|+|||+.+++.+..+ .+|...|.
T Consensus        43 ~~~v~vw~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~-~~~~~~i~  119 (366)
T 3k26_A           43 SNRVTLYECH--SQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHY-VGHGNAIN  119 (366)
T ss_dssp             TTEEEEEEEC--GGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEE-ESCCSCEE
T ss_pred             CCEEEEEEcC--CCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeee-cCCCCcEE
Confidence            3456777643  2233444443     6688999999998    679999999999999999999999888 79999999


Q ss_pred             EEEEec-CCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceee---cccCCceeEEEEecCCCCEEEEEeCCCcEE
Q 004468           98 CTKFVP-ETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALY---QCHTRRVKKLAVEVGNPHVVWSASEDGTLR  173 (751)
Q Consensus        98 ~v~fsp-~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~---~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~  173 (751)
                      +++|+| +  +.+|++|+.|+.|++||+..+          +.+..+   ..|...|.+++|+| ++.+|++++.||.|+
T Consensus       120 ~~~~~~~~--~~~l~s~~~dg~i~iwd~~~~----------~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~  186 (366)
T 3k26_A          120 ELKFHPRD--PNLLLSVSKDHALRLWNIQTD----------TLVAIFGGVEGHRDEVLSADYDL-LGEKIMSCGMDHSLK  186 (366)
T ss_dssp             EEEECSSC--TTEEEEEETTSCEEEEETTTT----------EEEEEECSTTSCSSCEEEEEECT-TSSEEEEEETTSCEE
T ss_pred             EEEECCCC--CCEEEEEeCCCeEEEEEeecC----------eEEEEecccccccCceeEEEECC-CCCEEEEecCCCCEE
Confidence            999999 6  799999999999999999864          345555   68999999999999 678999999999999


Q ss_pred             EEecCCCCCCCCCCC---CCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCC
Q 004468          174 QHDFRQGSSCPPAGS---SHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPP  250 (751)
Q Consensus       174 iwDlr~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~  250 (751)
                      +||+++++.......   .........................+...|.+++|+   +.+|++++.|+.|++||+++...
T Consensus       187 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~d~~i~~wd~~~~~~  263 (366)
T 3k26_A          187 LWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL---GDLILSKSCENAIVCWKPGKMED  263 (366)
T ss_dssp             EEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE---TTEEEEECSSSEEEEEEESSTTC
T ss_pred             EEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc---CCEEEEEecCCEEEEEeCCCccc
Confidence            999987642200000   000000000000000000111223377889999998   46999999999999999987653


Q ss_pred             ccccC-CCCCCCCccccccccccccCCccccceEEEEEcCC--CCEEEEEeCCCcEEEEECCCC
Q 004468          251 LTSCQ-KRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPN--GEEVLLSYSGEHVYLMDVNHA  311 (751)
Q Consensus       251 ~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspd--g~~Ll~~s~d~~I~lwdl~~~  311 (751)
                      ..... ........+..+       .+|.. .|++++|+|+  |++|++++.|+.|++||+.++
T Consensus       264 ~~~~~~~~~~~~~~~~~~-------~~~~~-~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~  319 (366)
T 3k26_A          264 DIDKIKPSESNVTILGRF-------DYSQC-DIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVE  319 (366)
T ss_dssp             CGGGCCTTCCCEEEEEEE-------ECSSC-CSSCCCCEECTTSSEEEEECTTSCEEEEECCSS
T ss_pred             cccccccCCcchheeccc-------cccCC-cEEEEEEcCCCCCcEEEEEecCCcEEEEECCCC
Confidence            21111 000000111111       22333 5889999999  999999999999999998873

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.96  E-value=3.5e-28  Score=262.59  Aligned_cols=246  Identities=13%  Similarity=0.134  Sum_probs=187.5

Q ss_pred             cccccccchhhhccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEe-cccCCcceEEEEEecC
Q 004468           26 VNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSI-ETGHSANVFCTKFVPE  104 (751)
Q Consensus        26 ~~~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l-~~~h~~~V~~v~fsp~  104 (751)
                      .+..+++|+....++++...+.+|.+.|++++|+|++++|++|+.|+.|+|||+.+++....+ ...|...|.+++|+|+
T Consensus        28 ~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~  107 (372)
T 1k8k_C           28 NNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPN  107 (372)
T ss_dssp             SSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTT
T ss_pred             CCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCC
Confidence            467788887655555688999999999999999999999999999999999999888754433 2679999999999999


Q ss_pred             CCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCC
Q 004468          105 TSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCP  184 (751)
Q Consensus       105 s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~  184 (751)
                        +++|++|+.|+.|++||+.......      ........|...|.+++|+| ++.+|++++.||.|++||++......
T Consensus       108 --~~~l~~~~~d~~v~i~d~~~~~~~~------~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~  178 (372)
T 1k8k_C          108 --EKKFAVGSGSRVISICYFEQENDWW------VCKHIKKPIRSTVLSLDWHP-NSVLLAAGSCDFKCRIFSAYIKEVEE  178 (372)
T ss_dssp             --SSEEEEEETTSSEEEEEEETTTTEE------EEEEECTTCCSCEEEEEECT-TSSEEEEEETTSCEEEEECCCTTTSC
T ss_pred             --CCEEEEEeCCCEEEEEEecCCCcce------eeeeeecccCCCeeEEEEcC-CCCEEEEEcCCCCEEEEEcccccccc
Confidence              7999999999999999998642100      01233467899999999999 67899999999999999987543211


Q ss_pred             CCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCcc
Q 004468          185 PAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCV  264 (751)
Q Consensus       185 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~  264 (751)
                      .....       .+.........+.....|...|.+++|+|+ +.+|++++.|+.|++||+++.+.+..+          
T Consensus       179 ~~~~~-------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~----------  240 (372)
T 1k8k_C          179 RPAPT-------PWGSKMPFGELMFESSSSCGWVHGVCFSAN-GSRVAWVSHDSTVCLADADKKMAVATL----------  240 (372)
T ss_dssp             CCCCB-------TTBSCCCTTCEEEECCCCSSCEEEEEECSS-SSEEEEEETTTEEEEEEGGGTTEEEEE----------
T ss_pred             ccccc-------ccccccchhhheEecCCCCCeEEEEEECCC-CCEEEEEeCCCEEEEEECCCCceeEEE----------
Confidence            00000       000000001112223346778999999994 789999999999999999876543322          


Q ss_pred             ccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004468          265 NYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (751)
Q Consensus       265 ~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~  310 (751)
                                .+|.. .|++++|+|++++|+++ .|+.|++|++.+
T Consensus       241 ----------~~~~~-~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~  274 (372)
T 1k8k_C          241 ----------ASETL-PLLAVTFITESSLVAAG-HDCFPVLFTYDS  274 (372)
T ss_dssp             ----------ECSSC-CEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred             ----------ccCCC-CeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence                      12322 59999999999988877 999999999987

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.96  E-value=1e-27  Score=255.48  Aligned_cols=225  Identities=20%  Similarity=0.298  Sum_probs=182.6

Q ss_pred             cccccccchhhhc---cccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEe
Q 004468           26 VNHSLQMHSSLVR---RLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV  102 (751)
Q Consensus        26 ~~~~l~~~~~~i~---~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fs  102 (751)
                      .+..+++|+....   ...+.++|++|.+.|++++|+|+|++|++|+.|+.|++|+.......... ..+...+..+.++
T Consensus        59 ~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~  137 (340)
T 4aow_A           59 RDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRF-VGHTKDVLSVAFS  137 (340)
T ss_dssp             TTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE-ECCSSCEEEEEEC
T ss_pred             CCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeee-cCCCCceeEEEEe
Confidence            4678888874322   23467889999999999999999999999999999999999988887777 6788899999999


Q ss_pred             cCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCC-CEEEEEeCCCcEEEEecCCCC
Q 004468          103 PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNP-HVVWSASEDGTLRQHDFRQGS  181 (751)
Q Consensus       103 p~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~-~~l~s~s~Dg~I~iwDlr~~~  181 (751)
                      |.  +.+|++|+.|+.+++||+....         .......+|...|..++|+++.. .++++++.|++|++||+++++
T Consensus       138 ~~--~~~l~s~s~d~~~~~~d~~~~~---------~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~  206 (340)
T 4aow_A          138 SD--NRQIVSGSRDKTIKLWNTLGVC---------KYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCK  206 (340)
T ss_dssp             TT--SSCEEEEETTSCEEEECTTSCE---------EEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTE
T ss_pred             ec--CccceeecCCCeEEEEEeCCCc---------eEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCc
Confidence            99  7899999999999999987531         23455678999999999998543 478899999999999998765


Q ss_pred             CCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCC
Q 004468          182 SCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPP  261 (751)
Q Consensus       182 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~  261 (751)
                      ..                         .....|...|++++|+| ++.+|++|+.|+.|++||+++.+.+..+       
T Consensus       207 ~~-------------------------~~~~~h~~~v~~~~~s~-~~~~l~s~s~Dg~i~iwd~~~~~~~~~~-------  253 (340)
T 4aow_A          207 LK-------------------------TNHIGHTGYLNTVTVSP-DGSLCASGGKDGQAMLWDLNEGKHLYTL-------  253 (340)
T ss_dssp             EE-------------------------EEECCCSSCEEEEEECT-TSSEEEEEETTCEEEEEETTTTEEEEEE-------
T ss_pred             ee-------------------------eEecCCCCcEEEEEECC-CCCEEEEEeCCCeEEEEEeccCceeeee-------
Confidence            21                         11223677899999999 4799999999999999999876543221       


Q ss_pred             CccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 004468          262 PCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (751)
Q Consensus       262 ~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~  311 (751)
                                   .++.  .|+.+.|+|++. +++++.|+.|+|||+.+.
T Consensus       254 -------------~~~~--~v~~~~~~~~~~-~~~~~~d~~i~iwd~~~~  287 (340)
T 4aow_A          254 -------------DGGD--IINALCFSPNRY-WLCAATGPSIKIWDLEGK  287 (340)
T ss_dssp             -------------ECSS--CEEEEEECSSSS-EEEEEETTEEEEEETTTT
T ss_pred             -------------cCCc--eEEeeecCCCCc-eeeccCCCEEEEEECCCC
Confidence                         1121  499999999876 556677999999998873

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.96  E-value=3.1e-28  Score=261.12  Aligned_cols=229  Identities=14%  Similarity=0.174  Sum_probs=177.8

Q ss_pred             ccccccchhhhccccccEEeccCCCcEEEEEECCC---CCEEEEEeCCCcEEEEeCCCCe-EEEEecccCCcceEEEEE-
Q 004468           27 NHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSK---GSLLISGSDDTHINVWSYSSRK-LLHSIETGHSANVFCTKF-  101 (751)
Q Consensus        27 ~~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~d---g~~LaSgs~Dg~I~IWd~~~~~-~~~~l~~~h~~~V~~v~f-  101 (751)
                      +..+++|+....+...... .+|.+.|++++|+|+   |++|++|+.||.|+|||+.+++ .+..+ .+|...|.+++| 
T Consensus        43 d~~v~iw~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~~  120 (357)
T 3i2n_A           43 TGVIQLYEIQHGDLKLLRE-IEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSV-KGHKEIINAIDGI  120 (357)
T ss_dssp             CEEEEEEEECSSSEEEEEE-EEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEE-CCCSSCEEEEEEE
T ss_pred             CcEEEEEeCCCCcccceee-ecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEE-EecccceEEEeec
Confidence            5678888755444333333 379999999999998   7999999999999999999887 77777 799999999976 


Q ss_pred             -----ecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCC----ceeEEE----EecCCCCEEEEEeC
Q 004468          102 -----VPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTR----RVKKLA----VEVGNPHVVWSASE  168 (751)
Q Consensus       102 -----sp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~----~V~~l~----~sp~~~~~l~s~s~  168 (751)
                           +|+  +++|++|+.|+.|++||+....         .++..+..|.+    .|.+++    |+| ++.+|++++.
T Consensus       121 ~~~~~s~~--~~~l~~~~~d~~i~vwd~~~~~---------~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~l~~~~~  188 (357)
T 3i2n_A          121 GGLGIGEG--APEIVTGSRDGTVKVWDPRQKD---------DPVANMEPVQGENKRDCWTVAFGNAYNQ-EERVVCAGYD  188 (357)
T ss_dssp             SGGGCC-C--CCEEEEEETTSCEEEECTTSCS---------SCSEEECCCTTSCCCCEEEEEEECCCC--CCCEEEEEET
T ss_pred             cccccCCC--ccEEEEEeCCCeEEEEeCCCCC---------CcceeccccCCCCCCceEEEEEEeccCC-CCCEEEEEcc
Confidence                 456  7899999999999999998642         24566655554    899998    567 6789999999


Q ss_pred             CCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCC--CCcEEEEEeCCCeEEEEeCC
Q 004468          169 DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISST--RPHLLLVGGSDAFARLYDRR  246 (751)
Q Consensus       169 Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~--~~~~l~sgs~D~~IriwD~~  246 (751)
                      ||.|++||+++++..            ..              ..+...|.+++|+|.  ++.+|++|+.|+.|++||++
T Consensus       189 d~~i~i~d~~~~~~~------------~~--------------~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~  242 (357)
T 3i2n_A          189 NGDIKLFDLRNMALR------------WE--------------TNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMR  242 (357)
T ss_dssp             TSEEEEEETTTTEEE------------EE--------------EECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEE
T ss_pred             CCeEEEEECccCcee------------ee--------------cCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCc
Confidence            999999999886521            00              114567999999993  37899999999999999998


Q ss_pred             CCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCC-EEEEEeCCCcEEEEECCCC
Q 004468          247 MLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGE-EVLLSYSGEHVYLMDVNHA  311 (751)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~-~Ll~~s~d~~I~lwdl~~~  311 (751)
                      +.+....+.             ...  ..+|.. .|++++|+|+++ +|++++.|+.|++||+..+
T Consensus       243 ~~~~~~~~~-------------~~~--~~~~~~-~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  292 (357)
T 3i2n_A          243 TQHPTKGFA-------------SVS--EKAHKS-TVWQVRHLPQNRELFLTAGGAGGLHLWKYEYP  292 (357)
T ss_dssp             EEETTTEEE-------------EEE--EECCSS-CEEEEEEETTEEEEEEEEETTSEEEEEEEECC
T ss_pred             CCCccccee-------------eec--cCCCcC-CEEEEEECCCCCcEEEEEeCCCcEEEeecCCC
Confidence            755432210             000  013433 699999999999 8999999999999998873

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.96  E-value=1.3e-27  Score=254.12  Aligned_cols=192  Identities=16%  Similarity=0.150  Sum_probs=140.9

Q ss_pred             EecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecC-CCCEEEE
Q 004468           87 SIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVG-NPHVVWS  165 (751)
Q Consensus        87 ~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~-~~~~l~s  165 (751)
                      .+..+|.+.|++++|+|+  +.+|++|+.|+.|+|||+......      .+....+.+|...|.+++|+|. ++.+|++
T Consensus         5 ~~~~gH~~~v~~~~~~~~--~~~l~~~~~dg~i~iw~~~~~~~~------~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s   76 (351)
T 3f3f_A            5 PFDSGHDDLVHDVVYDFY--GRHVATCSSDQHIKVFKLDKDTSN------WELSDSWRAHDSSIVAIDWASPEYGRIIAS   76 (351)
T ss_dssp             CEECCCSSCEEEEEECSS--SSEEEEEETTSEEEEEEECSSSCC------EEEEEEEECCSSCEEEEEECCGGGCSEEEE
T ss_pred             ccCcccccceeEEEEcCC--CCEEEEeeCCCeEEEEECCCCCCc------ceecceeccCCCcEEEEEEcCCCCCCEEEE
Confidence            344799999999999998  899999999999999999864321      1346677899999999999985 4789999


Q ss_pred             EeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCC-CcEEEEEeCCCeEEEEe
Q 004468          166 ASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR-PHLLLVGGSDAFARLYD  244 (751)
Q Consensus       166 ~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~-~~~l~sgs~D~~IriwD  244 (751)
                      ++.||+|++||++++......     .           ....+.....|...|.+++|+|+. +.+|++++.|+.|++||
T Consensus        77 ~~~dg~v~vwd~~~~~~~~~~-----~-----------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd  140 (351)
T 3f3f_A           77 ASYDKTVKLWEEDPDQEECSG-----R-----------RWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYD  140 (351)
T ss_dssp             EETTSCEEEEEECTTSCTTSS-----C-----------SEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEE
T ss_pred             EcCCCeEEEEecCCCcccccc-----c-----------CcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEec
Confidence            999999999999987532100     0           001112223467889999999942 78999999999999999


Q ss_pred             CCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCC---CCEEEEEeCCCcEEEEECCC
Q 004468          245 RRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPN---GEEVLLSYSGEHVYLMDVNH  310 (751)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspd---g~~Ll~~s~d~~I~lwdl~~  310 (751)
                      +++.+.+..+...       ...........++.. .+++++|+|+   +.+|++++.++.+.+|+...
T Consensus       141 ~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~-~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~  201 (351)
T 3f3f_A          141 ALEPSDLRSWTLT-------SEMKVLSIPPANHLQ-SDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKD  201 (351)
T ss_dssp             CSSTTCTTCCEEE-------EEEESCSCCCSSCSC-CCEEEEECCCSSSCCEEEEEETTEEEEEEECTT
T ss_pred             CCChHHhcccccc-------ccccccccccCCccc-ceeEEEeccCCCCCcEEEEecCCCcEEEEccCC
Confidence            9987755433210       000011111122333 5999999997   99999999999997776544

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.96  E-value=7.4e-28  Score=262.13  Aligned_cols=244  Identities=11%  Similarity=0.107  Sum_probs=179.7

Q ss_pred             cccccccchhhhccccccEEeccCCCcEEEEEECC-CCCEEEEEeCCCcEEEEeCCCCeEEEEec--ccCCcceEEEEEe
Q 004468           26 VNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNS-KGSLLISGSDDTHINVWSYSSRKLLHSIE--TGHSANVFCTKFV  102 (751)
Q Consensus        26 ~~~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~-dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~--~~h~~~V~~v~fs  102 (751)
                      .+..+++|+....+......+.+|.+.|++++|+| ++++|++|+.|+.|+|||+.+ ..+..+.  .+|...|.+++|+
T Consensus        94 ~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~  172 (383)
T 3ei3_B           94 KGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVS  172 (383)
T ss_dssp             BTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEE
T ss_pred             CCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEEC
Confidence            35678888765545444444558999999999999 789999999999999999985 4444442  2345889999999


Q ss_pred             cCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCC
Q 004468          103 PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSS  182 (751)
Q Consensus       103 p~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~  182 (751)
                      |+  +.+|++|+.|+.|++||+..           +++..+.+|...|.+++|+|++..+|++++.|++|++||+++.+.
T Consensus       173 ~~--~~~l~~~~~d~~i~i~d~~~-----------~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~  239 (383)
T 3ei3_B          173 VS--RQMLATGDSTGRLLLLGLDG-----------HEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKD  239 (383)
T ss_dssp             TT--TTEEEEEETTSEEEEEETTS-----------CEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCS
T ss_pred             CC--CCEEEEECCCCCEEEEECCC-----------CEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCc
Confidence            99  79999999999999999952           557888999999999999995544999999999999999998542


Q ss_pred             CCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCC
Q 004468          183 CPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPP  262 (751)
Q Consensus       183 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~  262 (751)
                      ..       .+...+               .+...|++++|+|.++.+|++++.|+.|++||+++.+....+........
T Consensus       240 ~~-------~~~~~~---------------~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~  297 (383)
T 3ei3_B          240 KN-------SYIAEM---------------PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQF  297 (383)
T ss_dssp             TT-------CEEEEE---------------ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCC
T ss_pred             cc-------ceEEEe---------------cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccccccccccccc
Confidence            10       000111               25678999999994478999999999999999998775443321100000


Q ss_pred             ccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 004468          263 CVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (751)
Q Consensus       263 ~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~  311 (751)
                      .  ...+...  .-+....+..++|+|+|++  +++.|+.|+|||+.++
T Consensus       298 ~--~~~~~~~--~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~  340 (383)
T 3ei3_B          298 Q--HLTPIKA--TWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSG  340 (383)
T ss_dssp             T--TSCCCCC--EECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTC
T ss_pred             c--cccceEE--eccCCCCceEEEecCCccc--ccCCCCeEEEEecCCC
Confidence            0  0000000  0011224667888888877  7778999999998773

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.96  E-value=3.4e-28  Score=265.49  Aligned_cols=245  Identities=11%  Similarity=0.117  Sum_probs=183.8

Q ss_pred             cccccccchhhhcc----ccccEEeccCCCcEEEEEECCC----C---CEEEEEeCCCcEEEEeCCCCeE-----EEEec
Q 004468           26 VNHSLQMHSSLVRR----LSQERELEGHQGCVNAISWNSK----G---SLLISGSDDTHINVWSYSSRKL-----LHSIE   89 (751)
Q Consensus        26 ~~~~l~~~~~~i~~----~~~~~~L~gH~~~V~~l~~s~d----g---~~LaSgs~Dg~I~IWd~~~~~~-----~~~l~   89 (751)
                      .+..+++|+.....    ..+...+.+|...|++++|+|+    |   ++|++|+.|+.|+|||+.+++.     +..+ 
T Consensus        34 ~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~-  112 (397)
T 1sq9_A           34 GDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKL-  112 (397)
T ss_dssp             TTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEE-
T ss_pred             CCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceee-
Confidence            46677888765444    4578899999999999999999    9   9999999999999999987775     6677 


Q ss_pred             ccC-----CcceEEEEEe----cCCCCcE-EEEEECCCcEEEEECCC------CCCCCCCCCCCCCceee-------ccc
Q 004468           90 TGH-----SANVFCTKFV----PETSDEL-VVSGAGDAEVRLFNLSR------FSGRGLDDNAITPSALY-------QCH  146 (751)
Q Consensus        90 ~~h-----~~~V~~v~fs----p~s~~~~-l~sgs~Dg~V~vwd~~~------~~~~~~~~~~~~~~~~~-------~~h  146 (751)
                      .+|     ...|.+++|+    |+  +.+ |++|+.|+.|++||+..      .....     ..+...+       ..|
T Consensus       113 ~~~~~~~~~~~v~~~~~~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~  185 (397)
T 1sq9_A          113 DLLDSDMKKHSFWALKWGASNDRL--LSHRLVATDVKGTTYIWKFHPFADESNSLTLN-----WSPTLELQGTVESPMTP  185 (397)
T ss_dssp             CCSCTTGGGSCEEEEEEECCC------CEEEEEEETTSCEEEEEEESSSSHHHHTTTC-----CCCEEEEEEEECCSSSS
T ss_pred             cccccccCCCcEEEEEEeeccCCC--CceEEEEEeCCCcEEEEeCCccccccccceee-----ccCcceeeeeeccccCC
Confidence            678     5999999999    88  788 99999999999999986      31110     1112255       458


Q ss_pred             CCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCC---ccceEEEEE
Q 004468          147 TRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQ---TLSLKSCDI  223 (751)
Q Consensus       147 ~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~---~~~v~~i~~  223 (751)
                      ...|.+++|+| ++ +|++++.||.|++||+++++..              ..        +.....|   ...|.+++|
T Consensus       186 ~~~i~~~~~~~-~~-~l~~~~~dg~i~i~d~~~~~~~--------------~~--------~~~~~~h~~~~~~i~~i~~  241 (397)
T 1sq9_A          186 SQFATSVDISE-RG-LIATGFNNGTVQISELSTLRPL--------------YN--------FESQHSMINNSNSIRSVKF  241 (397)
T ss_dssp             CCCCCEEEECT-TS-EEEEECTTSEEEEEETTTTEEE--------------EE--------EECCC---CCCCCEEEEEE
T ss_pred             CCCceEEEECC-Cc-eEEEEeCCCcEEEEECCCCcee--------------EE--------EeccccccccCCccceEEE
Confidence            99999999999 55 9999999999999999876421              11        1111124   678999999


Q ss_pred             eCCCCcEEEEEeCC---CeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCC
Q 004468          224 SSTRPHLLLVGGSD---AFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG  300 (751)
Q Consensus       224 sp~~~~~l~sgs~D---~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d  300 (751)
                      +|+ +.+|++++.|   +.|++||+++.+.+..+.....+...       ......|.. .|++++|+|++++|++++.|
T Consensus       242 ~~~-~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d  312 (397)
T 1sq9_A          242 SPQ-GSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQA-------SLGEFAHSS-WVMSLSFNDSGETLCSAGWD  312 (397)
T ss_dssp             CSS-TTEEEEEEEETTEEEEEEEETTTCCEEEEECBC---------------CCBSBSS-CEEEEEECSSSSEEEEEETT
T ss_pred             CCC-CCEEEEEecCCCCceEEEEECCCCcccceeccCcccccc-------cccccccCC-cEEEEEECCCCCEEEEEeCC
Confidence            995 7999999999   99999999987655443211000000       000001333 69999999999999999999


Q ss_pred             CcEEEEECCCC
Q 004468          301 EHVYLMDVNHA  311 (751)
Q Consensus       301 ~~I~lwdl~~~  311 (751)
                      +.|+|||+.++
T Consensus       313 g~i~iwd~~~~  323 (397)
T 1sq9_A          313 GKLRFWDVKTK  323 (397)
T ss_dssp             SEEEEEETTTT
T ss_pred             CeEEEEEcCCC
Confidence            99999999884

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.96  E-value=3.4e-28  Score=266.99  Aligned_cols=212  Identities=21%  Similarity=0.218  Sum_probs=164.8

Q ss_pred             CcEEEEEECCCCC-EEEEEeCCCcEEEEeCCCCeE----EEEecccCCcceEEEEEec-CCCCcEEEEEECCCcEEEEEC
Q 004468           51 GCVNAISWNSKGS-LLISGSDDTHINVWSYSSRKL----LHSIETGHSANVFCTKFVP-ETSDELVVSGAGDAEVRLFNL  124 (751)
Q Consensus        51 ~~V~~l~~s~dg~-~LaSgs~Dg~I~IWd~~~~~~----~~~l~~~h~~~V~~v~fsp-~s~~~~l~sgs~Dg~V~vwd~  124 (751)
                      ...+.++++|+.. ++++|+.||.|+||++.....    +..+ .+|.+.|.+++|+| +  +.+|++|+.|++|+|||+
T Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~-~~h~~~V~~~~~~p~~--~~~l~s~s~dg~v~vw~~  111 (402)
T 2aq5_A           35 WDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLV-CGHTAPVLDIAWCPHN--DNVIASGSEDCTVMVWEI  111 (402)
T ss_dssp             CSSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCB-CCCSSCEEEEEECTTC--TTEEEEEETTSEEEEEEC
T ss_pred             cCCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceE-ecCCCCEEEEEeCCCC--CCEEEEEeCCCeEEEEEc
Confidence            3455789999875 445689999999999865432    2334 78999999999999 6  799999999999999999


Q ss_pred             CCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCc
Q 004468          125 SRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGA  204 (751)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~  204 (751)
                      .......   ....++..+.+|...|.+++|+|++.++|++++.||+|++||+++++..              ..+    
T Consensus       112 ~~~~~~~---~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~--------------~~~----  170 (402)
T 2aq5_A          112 PDGGLVL---PLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAV--------------LTL----  170 (402)
T ss_dssp             CTTCCSS---CBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEE--------------EEE----
T ss_pred             cCCCCcc---ccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCcc--------------EEE----
Confidence            8642110   0114577889999999999999965589999999999999999876521              100    


Q ss_pred             eecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEE
Q 004468          205 KRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTH  284 (751)
Q Consensus       205 ~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~  284 (751)
                           ....|...|.+++|+| ++.+|++++.|+.|++||+++.+.+..+             .      .+|....+.+
T Consensus       171 -----~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~-------------~------~~~~~~~~~~  225 (402)
T 2aq5_A          171 -----GPDVHPDTIYSVDWSR-DGALICTSCRDKRVRVIEPRKGTVVAEK-------------D------RPHEGTRPVH  225 (402)
T ss_dssp             -----CTTTCCSCEEEEEECT-TSSCEEEEETTSEEEEEETTTTEEEEEE-------------E------CSSCSSSCCE
T ss_pred             -----ecCCCCCceEEEEECC-CCCEEEEEecCCcEEEEeCCCCceeeee-------------c------cCCCCCcceE
Confidence                 0123677899999999 5789999999999999999876533221             0      1233334889


Q ss_pred             EEEcCCCCEEEEE---eCCCcEEEEECCCC
Q 004468          285 VTFSPNGEEVLLS---YSGEHVYLMDVNHA  311 (751)
Q Consensus       285 v~fspdg~~Ll~~---s~d~~I~lwdl~~~  311 (751)
                      +.|+|++++|+++   +.|+.|++||+.+.
T Consensus       226 ~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~  255 (402)
T 2aq5_A          226 AVFVSEGKILTTGFSRMSERQVALWDTKHL  255 (402)
T ss_dssp             EEECSTTEEEEEEECTTCCEEEEEEETTBC
T ss_pred             EEEcCCCcEEEEeccCCCCceEEEEcCccc
Confidence            9999999999999   78999999998873

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.96  E-value=3.4e-27  Score=253.77  Aligned_cols=231  Identities=15%  Similarity=0.184  Sum_probs=178.3

Q ss_pred             cccccccchhhhccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCC
Q 004468           26 VNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPET  105 (751)
Q Consensus        26 ~~~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s  105 (751)
                      .+..+++|+  +.+.+.+.++.+|.+.|++++|+|++++|++++.|+.|+|||+.+++.+..+ . |...|.+++|+|+ 
T Consensus        52 ~dg~i~vwd--~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~-~~~~v~~~~~~~~-  126 (369)
T 3zwl_B           52 KDSSASVWY--SLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATW-K-SPVPVKRVEFSPC-  126 (369)
T ss_dssp             SSSCEEEEE--TTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEE-E-CSSCEEEEEECTT-
T ss_pred             CCCEEEEEe--CCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEe-e-cCCCeEEEEEccC-
Confidence            356777776  3456788999999999999999999999999999999999999999998888 3 8899999999999 


Q ss_pred             CCcEEEEEECC-----CcEEEEECCCCCCCCC-CCCCCCCceeecccCC--ceeEEEEecCCCCEEEEEeCCCcEEEEec
Q 004468          106 SDELVVSGAGD-----AEVRLFNLSRFSGRGL-DDNAITPSALYQCHTR--RVKKLAVEVGNPHVVWSASEDGTLRQHDF  177 (751)
Q Consensus       106 ~~~~l~sgs~D-----g~V~vwd~~~~~~~~~-~~~~~~~~~~~~~h~~--~V~~l~~sp~~~~~l~s~s~Dg~I~iwDl  177 (751)
                       +.+|++++.+     +.|++||+........ ......++..+..|..  .|.+++|+| ++.+|++++.||.|++||+
T Consensus       127 -~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~i~d~  204 (369)
T 3zwl_B          127 -GNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWST-KGKYIIAGHKDGKISKYDV  204 (369)
T ss_dssp             -SSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECG-GGCEEEEEETTSEEEEEET
T ss_pred             -CCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcC-CCCEEEEEcCCCEEEEEEC
Confidence             8999999999     9999999986432110 0011134556667777  999999999 6789999999999999999


Q ss_pred             CCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCC
Q 004468          178 RQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKR  257 (751)
Q Consensus       178 r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~  257 (751)
                      ++....             +           .....+...|.+++|+| ++.+|++++.|+.|++||+++.+.+..+.  
T Consensus       205 ~~~~~~-------------~-----------~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~v~d~~~~~~~~~~~--  257 (369)
T 3zwl_B          205 SNNYEY-------------V-----------DSIDLHEKSISDMQFSP-DLTYFITSSRDTNSFLVDVSTLQVLKKYE--  257 (369)
T ss_dssp             TTTTEE-------------E-----------EEEECCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEEE--
T ss_pred             CCCcEe-------------E-----------EEEecCCCceeEEEECC-CCCEEEEecCCceEEEEECCCCceeeeec--
Confidence            874211             1           11112567899999999 57999999999999999998865433221  


Q ss_pred             CCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004468          258 MSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (751)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~  310 (751)
                                         + ...++.++|+|++++|++++.++.+.+|....
T Consensus       258 -------------------~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  290 (369)
T 3zwl_B          258 -------------------T-DCPLNTAVITPLKEFIILGGGQEAKDVTTTSA  290 (369)
T ss_dssp             -------------------C-SSCEEEEEECSSSSEEEEEECCC---------
T ss_pred             -------------------C-CCCceeEEecCCCceEEEeecCCCceEEEEec
Confidence                               1 12589999999999999999887766665433

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.96  E-value=4e-28  Score=269.17  Aligned_cols=226  Identities=14%  Similarity=0.202  Sum_probs=158.8

Q ss_pred             ccccchhhhccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEec-CCCC
Q 004468           29 SLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP-ETSD  107 (751)
Q Consensus        29 ~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp-~s~~  107 (751)
                      .+.....++++++..-.+....      .|+|+++.+++++      +|+. +++.+..+..+|.+.|++++|+| +  +
T Consensus        12 ~~~~~~~~l~~~~~~p~~~~~~------~f~~~~~~~~~~~------~w~~-~g~~~~~~~~~h~~~V~~~~~s~~~--~   76 (437)
T 3gre_A           12 DVESIEKFLSTFKILPPLRDYK------EFGPIQEIVRSPN------MGNL-RGKLIATLMENEPNSITSSAVSPGE--T   76 (437)
T ss_dssp             --CCCGGGTTCC-CCCCGGGCG------GGCCCCCCCCCCC------GGGC-CCCEEEEECTTTTSCEEEEEEECSS--S
T ss_pred             ChhHHHHHhccCCCCCChhchh------hcCCccccccccc------cccc-cceEEeeeccCCCCceEEEEECCCC--C
Confidence            3444445555555544444332      4889999888876      4884 57788888678999999999999 7  7


Q ss_pred             cEEEEEECCCcEEEEECCCCC-CCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecC---CCCCC
Q 004468          108 ELVVSGAGDAEVRLFNLSRFS-GRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFR---QGSSC  183 (751)
Q Consensus       108 ~~l~sgs~Dg~V~vwd~~~~~-~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr---~~~~~  183 (751)
                      .+|++|+.|++|+|||+.... +..     ..+...+ .|...|++++|+| ++.+|++|+.||+|++||+.   .++..
T Consensus        77 ~~l~s~s~dg~v~vwd~~~~~~~~~-----~~~~~~~-~h~~~v~~~~~~~-~~~~l~s~s~dg~i~vwd~~~~~~~~~~  149 (437)
T 3gre_A           77 PYLITGSDQGVIKIWNLKEIIVGEV-----YSSSLTY-DCSSTVTQITMIP-NFDAFAVSSKDGQIIVLKVNHYQQESEV  149 (437)
T ss_dssp             CEEEEEETTSEEEEEEHHHHHTTCC-----CSCSEEE-ECSSCEEEEEECT-TSSEEEEEETTSEEEEEEEEEEEETTEE
T ss_pred             CEEEEecCCceEEEeECcccccCcc-----cceeeec-cCCCCEEEEEEeC-CCCEEEEEeCCCEEEEEEeccccCCcee
Confidence            999999999999999997511 100     1223333 5999999999999 77899999999999999996   33211


Q ss_pred             CCCCCCCCccceEEEecccCceecccCCCC-CccceEEEE--EeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCC
Q 004468          184 PPAGSSHQECRNILLDLRCGAKRSLADPPK-QTLSLKSCD--ISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSP  260 (751)
Q Consensus       184 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~v~~i~--~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~  260 (751)
                                 ..+.   ......+...+. +...+.++.  ++| ++.+|++|+.|+.|++||+++.+.+..+..    
T Consensus       150 -----------~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~----  210 (437)
T 3gre_A          150 -----------KFLN---CECIRKINLKNFGKNEYAVRMRAFVNE-EKSLLVALTNLSRVIIFDIRTLERLQIIEN----  210 (437)
T ss_dssp             -----------EEEE---EEEEEEEEGGGGSSCCCEEEEEEEECS-SCEEEEEEETTSEEEEEETTTCCEEEEEEC----
T ss_pred             -----------eccc---cceeEEEEccCcccccCceEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCeeeEEEcc----
Confidence                       0000   001111111110 345567776  556 478999999999999999998764332210    


Q ss_pred             CCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004468          261 PPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (751)
Q Consensus       261 ~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~  310 (751)
                                    ..|.. .|++++|+|++++|++++.|+.|++||+.+
T Consensus       211 --------------~~h~~-~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~  245 (437)
T 3gre_A          211 --------------SPRHG-AVSSICIDEECCVLILGTTRGIIDIWDIRF  245 (437)
T ss_dssp             --------------CGGGC-CEEEEEECTTSCEEEEEETTSCEEEEETTT
T ss_pred             --------------CCCCC-ceEEEEECCCCCEEEEEcCCCeEEEEEcCC
Confidence                          01223 699999999999999999999999999887

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.96  E-value=7.5e-27  Score=252.19  Aligned_cols=214  Identities=9%  Similarity=0.048  Sum_probs=141.0

Q ss_pred             ccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEE-EEEECCCc
Q 004468           40 LSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELV-VSGAGDAE  118 (751)
Q Consensus        40 ~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l-~sgs~Dg~  118 (751)
                      .+++.++++|.+.|++++|+|||++||+|+.|+ ++||++.++..+...   +...+..++|.+.  ++.+ ++++.|++
T Consensus         9 ~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~---~~~~~~~~~~~~~--~~~~~~~~~~d~~   82 (355)
T 3vu4_A            9 RNPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQ---EMRHLSKVRMLHR--TNYVAFVTGVKEV   82 (355)
T ss_dssp             ----------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEE---ECSCCCEEEECTT--SSEEEEECSSTTE
T ss_pred             cCCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeee---ecCCeEEEEEcCC--CCEEEEEECCccE
Confidence            345667789999999999999999999998875 789999887766554   2235888999988  4555 67888999


Q ss_pred             EEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCC-CCCCCCCCCCCccceEE
Q 004468          119 VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQG-SSCPPAGSSHQECRNIL  197 (751)
Q Consensus       119 V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~-~~~~~~~~~~~~~~~~l  197 (751)
                      |+|||+.++          +++..+. |...|.+++|++ +  .++.+ .|+.|++||+.+. +....            
T Consensus        83 v~iWd~~~~----------~~~~~~~-~~~~v~~v~~~~-~--~~~~~-~~~~i~i~d~~~~~~~~~~------------  135 (355)
T 3vu4_A           83 VHIWDDVKK----------QDVSRIK-VDAPVKDLFLSR-E--FIVVS-YGDVISVFKFGNPWKRITD------------  135 (355)
T ss_dssp             EEEEETTTT----------EEEEEEE-CSSCEEEEEECS-S--EEEEE-ETTEEEEEESSTTCCBSSC------------
T ss_pred             EEEEECCCC----------cEEEEEE-CCCceEEEEEcC-C--EEEEE-EcCEEEEEECCCCceeeEE------------
Confidence            999999864          4456665 677999999987 3  34343 4789999999887 32210            


Q ss_pred             EecccCceecccCCCCCccceEEEEEeCCCCcEEEE--EeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccC
Q 004468          198 LDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLV--GGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEH  275 (751)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~s--gs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (751)
                                   .   ......+++++   .++++  |+.||.|++||+++............    .....|......
T Consensus       136 -------------~---~~~~~~~~~s~---~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~----~~~~~p~~~~~~  192 (355)
T 3vu4_A          136 -------------D---IRFGGVCEFSN---GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQ----QKAILGKGVLIK  192 (355)
T ss_dssp             -------------C---EEEEEEEEEET---TEEEEEESSCTTCEEEEECCC----------------------CCEEEC
T ss_pred             -------------e---ccCCceEEEEc---cEEEEeCCCcCcEEEEEECCCCCcccccccccc----ccccCcccEEEE
Confidence                         0   00334556776   45555  68999999999987542211100000    000001000113


Q ss_pred             CccccceEEEEEcCCCCEEEEEeCCCc-EEEEECCC
Q 004468          276 GRSSLHLTHVTFSPNGEEVLLSYSGEH-VYLMDVNH  310 (751)
Q Consensus       276 g~~~~~vt~v~fspdg~~Ll~~s~d~~-I~lwdl~~  310 (751)
                      +|.. .|++++|+|+|++|++++.|++ |+|||+.+
T Consensus       193 ~h~~-~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~  227 (355)
T 3vu4_A          193 AHTN-PIKMVRLNRKSDMVATCSQDGTIIRVFKTED  227 (355)
T ss_dssp             CCSS-CEEEEEECTTSSEEEEEETTCSEEEEEETTT
T ss_pred             ccCC-ceEEEEECCCCCEEEEEeCCCCEEEEEECCC
Confidence            4554 6999999999999999999998 99999887

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.96  E-value=5.5e-28  Score=264.88  Aligned_cols=230  Identities=15%  Similarity=0.116  Sum_probs=144.3

Q ss_pred             CcEEEEEEC---CCCCEEEEEeCCCcEEEEeCCCC-------eEEEE-ecccCCcceEEEEEecCC--------------
Q 004468           51 GCVNAISWN---SKGSLLISGSDDTHINVWSYSSR-------KLLHS-IETGHSANVFCTKFVPET--------------  105 (751)
Q Consensus        51 ~~V~~l~~s---~dg~~LaSgs~Dg~I~IWd~~~~-------~~~~~-l~~~h~~~V~~v~fsp~s--------------  105 (751)
                      ....++.|.   +++..|++++.|+.|.+|+....       ..... ....|...+..+.|.+..              
T Consensus        16 ~~p~~~~w~~~~~~~~~l~a~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (393)
T 4gq1_A           16 VRPYTTTWCSQSPSCSNLLAIGHDTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYSENLHDGDGNVN   95 (393)
T ss_dssp             CCEEEEEECTTSGGGTTEEEEEESSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEECC---------
T ss_pred             CCCeEEEEeCCCCCCCCEEEEECCCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCccccccccCCCccee
Confidence            345667774   34444455556788999975311       11111 111344445555544321              


Q ss_pred             ----CCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEec-------CCCCEEEEEeCCCcEEE
Q 004468          106 ----SDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEV-------GNPHVVWSASEDGTLRQ  174 (751)
Q Consensus       106 ----~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-------~~~~~l~s~s~Dg~I~i  174 (751)
                          .+.+|++|+.|++|+|||+..+....     ..++..+.+|.+.|++++|+|       .++++|+|||.|++|++
T Consensus        96 ~~~~~~~~las~~~d~~v~lw~~~~~~~~~-----~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~  170 (393)
T 4gq1_A           96 SSPVYSLFLACVCQDNTVRLIITKNETIIT-----QHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLII  170 (393)
T ss_dssp             -CCEEEEEEEEEETTSCEEEEEEETTEEEE-----EEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEE
T ss_pred             ecCCCCCEEEEEeCCCcEEEEECCCCccce-----eeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEE
Confidence                14689999999999999998642111     023456789999999999987       25689999999999999


Q ss_pred             EecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCcccc
Q 004468          175 HDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSC  254 (751)
Q Consensus       175 wDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~  254 (751)
                      ||++++..+           ..+.              .+...|.+++|+|+++.+|++|+.|++|++||+++.+.....
T Consensus       171 Wd~~~~~~~-----------~~~~--------------~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~  225 (393)
T 4gq1_A          171 WRLTDEGPI-----------LAGY--------------PLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEEN  225 (393)
T ss_dssp             EEEETTEEE-----------EEEE--------------ECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC-----
T ss_pred             EECCCCcee-----------eeec--------------CCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccc
Confidence            999876421           1111              255689999999976679999999999999999987644332


Q ss_pred             CCCCCC--CCccccc-cc--cccccCCccccceEEEEEc-CCCCEEEEEeCCCcEEEEECCCC
Q 004468          255 QKRMSP--PPCVNYF-CP--MHLSEHGRSSLHLTHVTFS-PNGEEVLLSYSGEHVYLMDVNHA  311 (751)
Q Consensus       255 ~~~~~~--~~~~~~~-~~--~~~~~~g~~~~~vt~v~fs-pdg~~Ll~~s~d~~I~lwdl~~~  311 (751)
                      ......  ..+.... .+  ......+|.. .+.++.|+ |+|+.|++++.|+.+++||+..+
T Consensus       226 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~-~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~  287 (393)
T 4gq1_A          226 SQTELVKNPWLLTLNTLPLVNTCHSSGIAS-SLANVRWIGSDGSGILAMCKSGAWLRWNLFAN  287 (393)
T ss_dssp             -----CSCCCSEEEESGGGC------CCSS-SCSEEEEETTTTCEEEEECTTSEEEEEEC---
T ss_pred             cccCCcccceEEecccccceeeeecccccc-cceeeeeecCCCCEEEEEeCCCCEEEEECccC
Confidence            111100  0000000 00  0011123444 58889887 79999999999999999998873

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.96  E-value=1.2e-27  Score=261.21  Aligned_cols=190  Identities=18%  Similarity=0.175  Sum_probs=145.1

Q ss_pred             CCcEEEEeCCCCeEEEEecccCCcceEEEEEec-CCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCC-----ceeec
Q 004468           71 DTHINVWSYSSRKLLHSIETGHSANVFCTKFVP-ETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITP-----SALYQ  144 (751)
Q Consensus        71 Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp-~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~-----~~~~~  144 (751)
                      ++.++||++..++....+ .+|.+.|++++|+| +  +++|++|+.||.|+|||+........  .....     .....
T Consensus        22 ~~~~~v~~~~~~~~~~~~-~~h~~~v~~~~~s~~~--~~~l~~~~~dg~i~iw~~~~~~~~~~--~~~~~~~~~~~~~~~   96 (408)
T 4a11_B           22 ESTRRVLGLELNKDRDVE-RIHGGGINTLDIEPVE--GRYMLSGGSDGVIVLYDLENSSRQSY--YTCKAVCSIGRDHPD   96 (408)
T ss_dssp             HHHHHHHTEEECTTEEEC-CCCSSCEEEEEECTTT--CCEEEEEETTSCEEEEECCCCSSSSC--EEECEEEEECTTCTT
T ss_pred             cCcceeeccccCcceeee-eccCCcEEEEEEecCC--CCEEEEEcCCCeEEEEECCCCcccce--Eeccccccccccccc
Confidence            456788888777666666 78999999999999 7  79999999999999999996532110  00000     00113


Q ss_pred             ccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEe
Q 004468          145 CHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDIS  224 (751)
Q Consensus       145 ~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~s  224 (751)
                      +|...|.+++|+|+++.+|++++.||.|++||+++++..            ..+.              +...+.++.++
T Consensus        97 ~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~------------~~~~--------------~~~~~~~~~~~  150 (408)
T 4a11_B           97 VHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTA------------DVFN--------------FEETVYSHHMS  150 (408)
T ss_dssp             CCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEE------------EEEE--------------CSSCEEEEEEC
T ss_pred             cCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccc------------eecc--------------CCCceeeeEee
Confidence            599999999999977789999999999999999886521            1110              34568888898


Q ss_pred             CCC--CcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCE-EEEEeCCC
Q 004468          225 STR--PHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEE-VLLSYSGE  301 (751)
Q Consensus       225 p~~--~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~-Ll~~s~d~  301 (751)
                      |..  +.++++++.|+.|++||+++.+.+..+                    .+|.. .|++++|+|++++ |++++.|+
T Consensus       151 ~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~--------------------~~~~~-~v~~~~~~~~~~~ll~~~~~dg  209 (408)
T 4a11_B          151 PVSTKHCLVAVGTRGPKVQLCDLKSGSCSHIL--------------------QGHRQ-EILAVSWSPRYDYILATASADS  209 (408)
T ss_dssp             SSCSSCCEEEEEESSSSEEEEESSSSCCCEEE--------------------CCCCS-CEEEEEECSSCTTEEEEEETTS
T ss_pred             cCCCCCcEEEEEcCCCeEEEEeCCCcceeeee--------------------cCCCC-cEEEEEECCCCCcEEEEEcCCC
Confidence            853  349999999999999999876543322                    22333 5999999999995 88999999


Q ss_pred             cEEEEECCCCC
Q 004468          302 HVYLMDVNHAG  312 (751)
Q Consensus       302 ~I~lwdl~~~~  312 (751)
                      .|++||+.+..
T Consensus       210 ~i~i~d~~~~~  220 (408)
T 4a11_B          210 RVKLWDVRRAS  220 (408)
T ss_dssp             CEEEEETTCSS
T ss_pred             cEEEEECCCCC
Confidence            99999998854

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.95  E-value=5.6e-27  Score=260.01  Aligned_cols=219  Identities=17%  Similarity=0.264  Sum_probs=174.1

Q ss_pred             EEeccCCCcEEEEEECCC-CCEEEEEeCCCcEEEEeCCC----------CeEEEEecccCCcceEEEEEecCCCCc-EEE
Q 004468           44 RELEGHQGCVNAISWNSK-GSLLISGSDDTHINVWSYSS----------RKLLHSIETGHSANVFCTKFVPETSDE-LVV  111 (751)
Q Consensus        44 ~~L~gH~~~V~~l~~s~d-g~~LaSgs~Dg~I~IWd~~~----------~~~~~~l~~~h~~~V~~v~fsp~s~~~-~l~  111 (751)
                      ..+.+|.+.|++++|+|+ +.+||+|+.||.|+|||+.+          ...+..+ .+|...|++++|+|+  +. +|+
T Consensus       122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~~~--~~~~l~  198 (430)
T 2xyi_A          122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRL-RGHQKEGYGLSWNPN--LNGYLL  198 (430)
T ss_dssp             EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEE-ECCSSCCCCEEECTT--STTEEE
T ss_pred             EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEe-cCCCCCeEEEEeCCC--CCCeEE
Confidence            455689999999999997 78999999999999999976          5666677 799999999999999  55 999


Q ss_pred             EEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCC
Q 004468          112 SGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQ  191 (751)
Q Consensus       112 sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~  191 (751)
                      +|+.||.|+|||+.......   ....+...+.+|...|.+++|+|.++.+|++++.||.|++||+++.....       
T Consensus       199 s~~~dg~i~vwd~~~~~~~~---~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~-------  268 (430)
T 2xyi_A          199 SASDDHTICLWDINATPKEH---RVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSK-------  268 (430)
T ss_dssp             EECTTSCEEEEETTSCCBGG---GEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSS-------
T ss_pred             EEeCCCeEEEEeCCCCCCCC---ceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCc-------
Confidence            99999999999998632110   00123566778999999999999888999999999999999999864110       


Q ss_pred             ccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccc
Q 004468          192 ECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMH  271 (751)
Q Consensus       192 ~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (751)
                       .              +.....|...|++++|+|++..+|++|+.|+.|++||+++...            ++..+    
T Consensus       269 -~--------------~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~------------~~~~~----  317 (430)
T 2xyi_A          269 -P--------------SHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL------------KLHSF----  317 (430)
T ss_dssp             -C--------------SEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS------------CSEEE----
T ss_pred             -c--------------eeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCC------------CeEEe----
Confidence             0              0011135678999999997666899999999999999997431            11111    


Q ss_pred             cccCCccccceEEEEEcCCCC-EEEEEeCCCcEEEEECCC
Q 004468          272 LSEHGRSSLHLTHVTFSPNGE-EVLLSYSGEHVYLMDVNH  310 (751)
Q Consensus       272 ~~~~g~~~~~vt~v~fspdg~-~Ll~~s~d~~I~lwdl~~  310 (751)
                         .+|.. .|++++|+|+++ .|++++.|+.|+|||+..
T Consensus       318 ---~~h~~-~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~  353 (430)
T 2xyi_A          318 ---ESHKD-EIFQVQWSPHNETILASSGTDRRLHVWDLSK  353 (430)
T ss_dssp             ---ECCSS-CEEEEEECSSCTTEEEEEETTSCCEEEEGGG
T ss_pred             ---ecCCC-CEEEEEECCCCCCEEEEEeCCCcEEEEeCCC
Confidence               22333 699999999996 588899999999999877

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.95  E-value=2.6e-27  Score=254.29  Aligned_cols=202  Identities=14%  Similarity=0.116  Sum_probs=151.0

Q ss_pred             EEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCC
Q 004468           55 AISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDD  134 (751)
Q Consensus        55 ~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~  134 (751)
                      ...+.+++.+||+|+.||+|+|||+.+++.+..+.   ...|.++.|+|.     +++|+.|++|++|+...... ..+.
T Consensus        41 ~~~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~---~~~v~~~~~~~~-----~~s~s~D~~i~~w~~~~~~~-~~~~  111 (343)
T 3lrv_A           41 NKSMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT---TPNPRTGGEHPA-----IISRGPCNRLLLLYPGNQIT-ILDS  111 (343)
T ss_dssp             CSSSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE---EECCCTTCCCCS-----EEEECSTTEEEEEETTTEEE-EEET
T ss_pred             hhhhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe---cCCceeeeeCCc-----eEEecCCCeEEEEEccCceE-Eeec
Confidence            34456688999999999999999999999888873   567888888876     99999999999998763100 0000


Q ss_pred             CCCCCceee-cccCCceeEEEEec-CCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCC
Q 004468          135 NAITPSALY-QCHTRRVKKLAVEV-GNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPP  212 (751)
Q Consensus       135 ~~~~~~~~~-~~h~~~V~~l~~sp-~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  212 (751)
                      ...+.+..+ ..|...|.+++|+| .++.+|++++.||+|++||+++++..            .+.            ..
T Consensus       112 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~------------~~~------------~~  167 (343)
T 3lrv_A          112 KTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQY------------IVH------------SA  167 (343)
T ss_dssp             TTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEE------------EEE------------CC
T ss_pred             CCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEE------------EEE------------ec
Confidence            001213333 36778999999999 13478999999999999999986521            000            11


Q ss_pred             CCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCc-cccCCCCCCCCccccccccccccCCccccceEEEEEcCCC
Q 004468          213 KQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPL-TSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNG  291 (751)
Q Consensus       213 ~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg  291 (751)
                      .+...+++++|+| ++.+|++|+.|+.|++||+++.+.. ..+.                   .+|.. +|++++|+|+|
T Consensus       168 ~~~~~i~~~~~~p-dg~~lasg~~dg~i~iwd~~~~~~~~~~~~-------------------~~h~~-~v~~l~fs~~g  226 (343)
T 3lrv_A          168 KSDVEYSSGVLHK-DSLLLALYSPDGILDVYNLSSPDQASSRFP-------------------VDEEA-KIKEVKFADNG  226 (343)
T ss_dssp             CSSCCCCEEEECT-TSCEEEEECTTSCEEEEESSCTTSCCEECC-------------------CCTTS-CEEEEEECTTS
T ss_pred             CCCCceEEEEECC-CCCEEEEEcCCCEEEEEECCCCCCCccEEe-------------------ccCCC-CEEEEEEeCCC
Confidence            1345699999999 5899999999999999999987543 2110                   11433 69999999999


Q ss_pred             CEEEEEeCCCcEEEEECCCC
Q 004468          292 EEVLLSYSGEHVYLMDVNHA  311 (751)
Q Consensus       292 ~~Ll~~s~d~~I~lwdl~~~  311 (751)
                      .+|++++ ++.|+|||+.+.
T Consensus       227 ~~l~s~~-~~~v~iwd~~~~  245 (343)
T 3lrv_A          227 YWMVVEC-DQTVVCFDLRKD  245 (343)
T ss_dssp             SEEEEEE-SSBEEEEETTSS
T ss_pred             CEEEEEe-CCeEEEEEcCCC
Confidence            9999999 559999999873

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.95  E-value=2.5e-27  Score=262.67  Aligned_cols=201  Identities=15%  Similarity=0.165  Sum_probs=144.4

Q ss_pred             cCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCC
Q 004468           48 GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRF  127 (751)
Q Consensus        48 gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~  127 (751)
                      .-...|.+|+|+|||+++||+|.|++|+  |...+   ..+ .+|...|++|+|+|+  |       .++.+.+|+... 
T Consensus        13 ~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~---~~l-~gh~~~v~~V~FsPd--g-------~~~~~~~~~~~~-   76 (588)
T 2j04_A           13 EFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYA---KDI-NCNSKNLFHVKEFPL--E-------FENKLDFELAQQ-   76 (588)
T ss_dssp             CCSSSSCCEEECTTSCEEEECSSSEEEE--EECCC---SCC-SSBGGGTEEEEEECC--C-------CCCTTTTSCCCS-
T ss_pred             HhhccEEEEEECCCCCEEEEEcCCceee--ccccc---cee-cCCCccEEEEEECCC--C-------CcceEEEEeCCC-
Confidence            4457899999999999999999999999  75544   344 699999999999999  5       456555555432 


Q ss_pred             CCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceec
Q 004468          128 SGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRS  207 (751)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  207 (751)
                                ..+..+ .|...|.+++|+| ++..|++++.||+|++||...                .+..+. +    
T Consensus        77 ----------~~~~~~-~~~~~V~~vawSP-dG~~LAs~s~dg~V~iwd~~~----------------~l~~l~-~----  123 (588)
T 2j04_A           77 ----------NGLLNS-QPVCYPRVCKPSP-IDDWMAVLSNNGNVSVFKDNK----------------MLTNLD-S----  123 (588)
T ss_dssp             ----------SCSSTT-SCSCCEEEEEECS-SSSCEEEEETTSCEEEEETTE----------------EEEECC-C----
T ss_pred             ----------ceEeec-CCCCcEEEEEECC-CCCEEEEEeCCCcEEEEeCCc----------------eeeecc-C----
Confidence                      112222 4688999999999 778999999999999999432                111110 0    


Q ss_pred             ccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEE
Q 004468          208 LADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTF  287 (751)
Q Consensus       208 ~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~f  287 (751)
                        ..+.....|.+++||| ++++|++|+.||+|+|||+.........      -..+..+   .....+|.. +|.+++|
T Consensus       124 --~~~~~~~sv~svafSP-DG~~LAsgs~DGtVkIWd~~~~~l~~~~------~i~l~ti---~~~~~gh~~-~V~sVaw  190 (588)
T 2j04_A          124 --KGNLSSRTYHCFEWNP-IESSIVVGNEDGELQFFSIRKNSENTPE------FYFESSI---RLSDAGSKD-WVTHIVW  190 (588)
T ss_dssp             --SSCSTTTCEEEEEECS-SSSCEEEEETTSEEEEEECCCCTTTCCC------CEEEEEE---ECSCTTCCC-CEEEEEE
T ss_pred             --CCccccccEEEEEEcC-CCCEEEEEcCCCEEEEEECCCCcccccc------ceeeeee---ecccccccc-cEEEEEE
Confidence              0000123689999999 5899999999999999999875310000      0001111   011133444 7999999


Q ss_pred             cCCCCEEEEEeCCCcEEEEECCCCC
Q 004468          288 SPNGEEVLLSYSGEHVYLMDVNHAG  312 (751)
Q Consensus       288 spdg~~Ll~~s~d~~I~lwdl~~~~  312 (751)
                      +|||  |++++.|+.|++||+.+..
T Consensus       191 SPdg--Laass~D~tVrlWd~~~~~  213 (588)
T 2j04_A          191 YEDV--LVAALSNNSVFSMTVSASS  213 (588)
T ss_dssp             ETTE--EEEEETTCCEEEECCCSSS
T ss_pred             cCCc--EEEEeCCCeEEEEECCCCc
Confidence            9999  8899999999999998854

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.95  E-value=1.5e-26  Score=253.97  Aligned_cols=253  Identities=15%  Similarity=0.221  Sum_probs=195.4

Q ss_pred             ccccccchhhh-cc-ccccEEeccCCCcEEEEEECC-CCCEEEEEeCCCcEEEEeCCCC-------eEEEEecccCCcce
Q 004468           27 NHSLQMHSSLV-RR-LSQERELEGHQGCVNAISWNS-KGSLLISGSDDTHINVWSYSSR-------KLLHSIETGHSANV   96 (751)
Q Consensus        27 ~~~l~~~~~~i-~~-~~~~~~L~gH~~~V~~l~~s~-dg~~LaSgs~Dg~I~IWd~~~~-------~~~~~l~~~h~~~V   96 (751)
                      +..+.+|+... .+ .+....+.+|.+.|++++|+| ++++||+|+.||+|+|||+.++       ..+..+ .+|...|
T Consensus        56 ~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~-~~h~~~v  134 (402)
T 2aq5_A           56 GGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITL-EGHTKRV  134 (402)
T ss_dssp             SCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEE-ECCSSCE
T ss_pred             CCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEe-cCCCCeE
Confidence            45666766421 12 245667899999999999999 9999999999999999999887       456667 7999999


Q ss_pred             EEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceee--cccCCceeEEEEecCCCCEEEEEeCCCcEEE
Q 004468           97 FCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALY--QCHTRRVKKLAVEVGNPHVVWSASEDGTLRQ  174 (751)
Q Consensus        97 ~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~--~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~i  174 (751)
                      .+++|+|+. ..+|++|+.|+.|+|||+..+          +++..+  .+|...|.+++|+| ++.+|++++.||+|++
T Consensus       135 ~~~~~~p~~-~~~l~s~~~dg~i~iwd~~~~----------~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i  202 (402)
T 2aq5_A          135 GIVAWHPTA-QNVLLSAGCDNVILVWDVGTG----------AAVLTLGPDVHPDTIYSVDWSR-DGALICTSCRDKRVRV  202 (402)
T ss_dssp             EEEEECSSB-TTEEEEEETTSCEEEEETTTT----------EEEEEECTTTCCSCEEEEEECT-TSSCEEEEETTSEEEE
T ss_pred             EEEEECcCC-CCEEEEEcCCCEEEEEECCCC----------CccEEEecCCCCCceEEEEECC-CCCEEEEEecCCcEEE
Confidence            999999993 269999999999999999864          456777  78999999999999 6788999999999999


Q ss_pred             EecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCcc-ceEEEEEeCCCCcEEEEE---eCCCeEEEEeCCCCCC
Q 004468          175 HDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTL-SLKSCDISSTRPHLLLVG---GSDAFARLYDRRMLPP  250 (751)
Q Consensus       175 wDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~v~~i~~sp~~~~~l~sg---s~D~~IriwD~~~~~~  250 (751)
                      ||+++++..              ..+.          ..|.. .+.++.|+|+ +.+|++|   +.|+.|++||+++...
T Consensus       203 wd~~~~~~~--------------~~~~----------~~~~~~~~~~~~~~~~-~~~l~~g~~~~~d~~i~iwd~~~~~~  257 (402)
T 2aq5_A          203 IEPRKGTVV--------------AEKD----------RPHEGTRPVHAVFVSE-GKILTTGFSRMSERQVALWDTKHLEE  257 (402)
T ss_dssp             EETTTTEEE--------------EEEE----------CSSCSSSCCEEEECST-TEEEEEEECTTCCEEEEEEETTBCSS
T ss_pred             EeCCCCcee--------------eeec----------cCCCCCcceEEEEcCC-CcEEEEeccCCCCceEEEEcCccccC
Confidence            999986521              1100          11222 4789999994 7899998   7999999999987643


Q ss_pred             ccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEe-CCCcEEEEECCCCCc-ceee--eecCCCcee
Q 004468          251 LTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSY-SGEHVYLMDVNHAGG-RAMR--YTVGDASKI  326 (751)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s-~d~~I~lwdl~~~~~-~~~~--~~~~~~~~~  326 (751)
                      ..            ...      ...+.. .+.+++|+|++++|++++ .|+.|++||+.++.. ....  +.+...+..
T Consensus       258 ~~------------~~~------~~~~~~-~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~  318 (402)
T 2aq5_A          258 PL------------SLQ------ELDTSS-GVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRG  318 (402)
T ss_dssp             CS------------EEE------ECCCCS-SCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSE
T ss_pred             Cc------------eEE------eccCCC-ceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccc
Confidence            11            000      011222 489999999999997554 699999999998663 2222  234578889


Q ss_pred             EEeCCCCCCc
Q 004468          327 MSFTPTLNGL  336 (751)
Q Consensus       327 ~~~sp~~~~~  336 (751)
                      ++|+|+...+
T Consensus       319 ~~~sp~~~~~  328 (402)
T 2aq5_A          319 MGYMPKRGLE  328 (402)
T ss_dssp             EEECCGGGSC
T ss_pred             eEEecccccc
Confidence            9999976544

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.95  E-value=2.8e-26  Score=247.78  Aligned_cols=240  Identities=16%  Similarity=0.206  Sum_probs=193.3

Q ss_pred             cccccccchhhhccccccEEeccCCCcEEEEEECCC--CCEEEEEeCCCcEEEEeCCCCe--EEEEecccCCcceEEEEE
Q 004468           26 VNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSK--GSLLISGSDDTHINVWSYSSRK--LLHSIETGHSANVFCTKF  101 (751)
Q Consensus        26 ~~~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~d--g~~LaSgs~Dg~I~IWd~~~~~--~~~~l~~~h~~~V~~v~f  101 (751)
                      .+..+++|+....+.++...+.+|.+.|++++|+++  +++|++|+.||.|+|||+.+++  .+..+ .+|...|.+++|
T Consensus        31 ~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~-~~~~~~v~~~~~  109 (379)
T 3jrp_A           31 SDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVH-AVHSASVNSVQW  109 (379)
T ss_dssp             TTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEE-CCCSSCEEEEEE
T ss_pred             CCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeee-cCCCcceEEEEe
Confidence            467788888766677888999999999999999987  9999999999999999999887  56666 789999999999


Q ss_pred             ecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecC------------CCCEEEEEeCC
Q 004468          102 VPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVG------------NPHVVWSASED  169 (751)
Q Consensus       102 sp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~------------~~~~l~s~s~D  169 (751)
                      +|+..+.+|++++.|+.|++||+.....        .....+..|...|.+++|+|.            ++.+|++++.|
T Consensus       110 ~~~~~~~~l~~~~~d~~i~v~d~~~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d  181 (379)
T 3jrp_A          110 APHEYGPLLLVASSDGKVSVVEFKENGT--------TSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGAD  181 (379)
T ss_dssp             CCGGGCSEEEEEETTSEEEEEECCTTSC--------CCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETT
T ss_pred             CCCCCCCEEEEecCCCcEEEEecCCCCc--------eeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCC
Confidence            9984358999999999999999986422        235567789999999999995            57899999999


Q ss_pred             CcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCC--CcEEEEEeCCCeEEEEeCCC
Q 004468          170 GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR--PHLLLVGGSDAFARLYDRRM  247 (751)
Q Consensus       170 g~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~--~~~l~sgs~D~~IriwD~~~  247 (751)
                      |.|++||++++...           ..+          +.....|...|.+++|+|++  +.+|++++.|+.|++||++.
T Consensus       182 g~i~i~d~~~~~~~-----------~~~----------~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~  240 (379)
T 3jrp_A          182 NLVKIWKYNSDAQT-----------YVL----------ESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDN  240 (379)
T ss_dssp             SCEEEEEEETTTTE-----------EEE----------EEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESS
T ss_pred             CeEEEEEecCCCcc-----------eee----------EEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCC
Confidence            99999999876421           000          11223467789999999954  79999999999999999987


Q ss_pred             CCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 004468          248 LPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (751)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~  311 (751)
                      .......           ..    .....|.. .|++++|+|+|++|++++.|+.|++||+...
T Consensus       241 ~~~~~~~-----------~~----~~~~~~~~-~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~  288 (379)
T 3jrp_A          241 EQGPWKK-----------TL----LKEEKFPD-VLWRASWSLSGNVLALSGGDNKVTLWKENLE  288 (379)
T ss_dssp             TTSCCEE-----------EE----SSSSCCSS-CEEEEEECSSSCCEEEEESSSSEEEEEEEET
T ss_pred             CCcccee-----------ee----eccccCCC-cEEEEEEcCCCCEEEEecCCCcEEEEeCCCC
Confidence            5421100           00    00012323 5999999999999999999999999999864

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.95  E-value=2.8e-26  Score=254.60  Aligned_cols=214  Identities=18%  Similarity=0.319  Sum_probs=176.1

Q ss_pred             ccccccchhhhccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCC
Q 004468           27 NHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETS  106 (751)
Q Consensus        27 ~~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~  106 (751)
                      +..+++|+  ..+.++..++.+|.+.|++++|  ++++|++|+.||+|+|||+.+++.+..+ .+|...|.+++|++   
T Consensus       152 dg~i~iwd--~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~-~~h~~~v~~l~~~~---  223 (435)
T 1p22_A          152 DNTIKIWD--KNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTL-IHHCEAVLHLRFNN---  223 (435)
T ss_dssp             SSCEEEEE--SSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEE-CCCCSCEEEEECCT---
T ss_pred             CCeEEEEe--CCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEE-cCCCCcEEEEEEcC---
Confidence            45667775  3566788899999999999999  7899999999999999999999999998 79999999999964   


Q ss_pred             CcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCC
Q 004468          107 DELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPA  186 (751)
Q Consensus       107 ~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~  186 (751)
                       .+|++|+.|+.|++||+......       .....+.+|...|.+++|   ++.+|++|+.||+|++||+++++..   
T Consensus       224 -~~l~s~s~dg~i~vwd~~~~~~~-------~~~~~~~~~~~~v~~~~~---~~~~l~s~~~dg~i~vwd~~~~~~~---  289 (435)
T 1p22_A          224 -GMMVTCSKDRSIAVWDMASPTDI-------TLRRVLVGHRAAVNVVDF---DDKYIVSASGDRTIKVWNTSTCEFV---  289 (435)
T ss_dssp             -TEEEEEETTSCEEEEECSSSSCC-------EEEEEECCCSSCEEEEEE---ETTEEEEEETTSEEEEEETTTCCEE---
T ss_pred             -CEEEEeeCCCcEEEEeCCCCCCc-------eeeeEecCCCCcEEEEEe---CCCEEEEEeCCCeEEEEECCcCcEE---
Confidence             58999999999999999864211       223678899999999999   4578999999999999999886521   


Q ss_pred             CCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCcccc
Q 004468          187 GSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNY  266 (751)
Q Consensus       187 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~  266 (751)
                                            .....|...|.+++++   +.++++|+.|+.|++||+++++.+..+            
T Consensus       290 ----------------------~~~~~~~~~v~~~~~~---~~~l~~g~~dg~i~iwd~~~~~~~~~~------------  332 (435)
T 1p22_A          290 ----------------------RTLNGHKRGIACLQYR---DRLVVSGSSDNTIRLWDIECGACLRVL------------  332 (435)
T ss_dssp             ----------------------EEEECCSSCEEEEEEE---TTEEEEEETTSCEEEEETTTCCEEEEE------------
T ss_pred             ----------------------EEEcCCCCcEEEEEeC---CCEEEEEeCCCeEEEEECCCCCEEEEE------------
Confidence                                  1112356778999995   469999999999999999986543322            


Q ss_pred             ccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004468          267 FCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (751)
Q Consensus       267 ~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~  310 (751)
                              .+|.. .|++++|  ++.+|++++.||.|++||+.+
T Consensus       333 --------~~h~~-~v~~~~~--~~~~l~sg~~dg~i~vwd~~~  365 (435)
T 1p22_A          333 --------EGHEE-LVRCIRF--DNKRIVSGAYDGKIKVWDLVA  365 (435)
T ss_dssp             --------CCCSS-CEEEEEC--CSSEEEEEETTSCEEEEEHHH
T ss_pred             --------eCCcC-cEEEEEe--cCCEEEEEeCCCcEEEEECCC
Confidence                    23433 5999998  789999999999999999765

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.95  E-value=7.3e-26  Score=252.50  Aligned_cols=208  Identities=10%  Similarity=0.139  Sum_probs=161.8

Q ss_pred             CcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCe---EEEEec--------------------------------------
Q 004468           51 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRK---LLHSIE--------------------------------------   89 (751)
Q Consensus        51 ~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~---~~~~l~--------------------------------------   89 (751)
                      .+|++++|+++|++|+++ .++.|++||+.+++   .+..+.                                      
T Consensus         5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (450)
T 2vdu_B            5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS   83 (450)
T ss_dssp             CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred             ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence            578899999999977666 56799999998887   554442                                      


Q ss_pred             ---------------ccCCcceEEEEEecCCCCcEE-EEEECCCcEEEEECCCCCCCCCCCCCCCCceeec--ccCCcee
Q 004468           90 ---------------TGHSANVFCTKFVPETSDELV-VSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQ--CHTRRVK  151 (751)
Q Consensus        90 ---------------~~h~~~V~~v~fsp~s~~~~l-~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~--~h~~~V~  151 (751)
                                     .+|.+.|.+++|+|+  +++| ++|+.|+.|+|||+....+        .++..+.  .|...|.
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d--~~~l~~~~~~dg~v~iwd~~~~~~--------~~~~~~~~~~~~~~v~  153 (450)
T 2vdu_B           84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSD--ESRLIACADSDKSLLVFDVDKTSK--------NVLKLRKRFCFSKRPN  153 (450)
T ss_dssp             ----------------CCCCCEEEEEECTT--SSEEEEEEGGGTEEEEEEECSSSS--------SCEEEEEEEECSSCEE
T ss_pred             ccccCccccCCCCCCCccCCceEEEEEcCC--CCEEEEEECCCCeEEEEECcCCCC--------ceeeeeecccCCCCce
Confidence                           134457999999999  7885 8999999999999982112        3456665  5778999


Q ss_pred             EEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCC--CCc
Q 004468          152 KLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISST--RPH  229 (751)
Q Consensus       152 ~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~--~~~  229 (751)
                      +++|+| ++.+|++|+.||.|++|++.++.....                     .+.....|...|++++|+|+  .+.
T Consensus       154 ~~~~sp-~~~~l~~~~~~g~v~~~~~~~~~~~~~---------------------~~~~~~~h~~~v~~~~~sp~~~~~~  211 (450)
T 2vdu_B          154 AISIAE-DDTTVIIADKFGDVYSIDINSIPEEKF---------------------TQEPILGHVSMLTDVHLIKDSDGHQ  211 (450)
T ss_dssp             EEEECT-TSSEEEEEETTSEEEEEETTSCCCSSC---------------------CCCCSEECSSCEEEEEEEECTTSCE
T ss_pred             EEEEcC-CCCEEEEEeCCCcEEEEecCCcccccc---------------------cceeeecccCceEEEEEcCCCCCCc
Confidence            999999 678999999999999999987653210                     01112236678999999994  168


Q ss_pred             EEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 004468          230 LLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVN  309 (751)
Q Consensus       230 ~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~  309 (751)
                      +|++|+.|+.|++||+++.+.+..             +.      .+|.. .|++++|+ +|++|++++.|+.|+|||+.
T Consensus       212 ~l~s~~~d~~i~vwd~~~~~~~~~-------------~~------~~h~~-~v~~~~~s-d~~~l~s~~~d~~v~vwd~~  270 (450)
T 2vdu_B          212 FIITSDRDEHIKISHYPQCFIVDK-------------WL------FGHKH-FVSSICCG-KDYLLLSAGGDDKIFAWDWK  270 (450)
T ss_dssp             EEEEEETTSCEEEEEESCTTCEEE-------------EC------CCCSS-CEEEEEEC-STTEEEEEESSSEEEEEETT
T ss_pred             EEEEEcCCCcEEEEECCCCceeee-------------ee------cCCCC-ceEEEEEC-CCCEEEEEeCCCeEEEEECC
Confidence            999999999999999987653321             11      23443 59999999 99999999999999999999


Q ss_pred             CCC
Q 004468          310 HAG  312 (751)
Q Consensus       310 ~~~  312 (751)
                      ++.
T Consensus       271 ~~~  273 (450)
T 2vdu_B          271 TGK  273 (450)
T ss_dssp             TCC
T ss_pred             CCc
Confidence            854

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.95  E-value=1.3e-25  Score=249.91  Aligned_cols=213  Identities=20%  Similarity=0.284  Sum_probs=175.5

Q ss_pred             ccccccchhhhccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCC
Q 004468           27 NHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETS  106 (751)
Q Consensus        27 ~~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~  106 (751)
                      +..+++|+.  .+.+++.++.+|.+.|++++|+  +++|++|+.||+|+|||+.+++.+..+ .+|...|.++.|.    
T Consensus       138 dg~i~vwd~--~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~-~~h~~~v~~~~~~----  208 (445)
T 2ovr_B          138 DNTLKVWSA--VTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTL-YGHTSTVRCMHLH----  208 (445)
T ss_dssp             TSCEEEEET--TTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEEE----
T ss_pred             CCcEEEEEC--CCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEE-CCCCCcEEEEEec----
Confidence            456666653  4567888999999999999997  679999999999999999999999998 7999999999996    


Q ss_pred             CcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCC
Q 004468          107 DELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPA  186 (751)
Q Consensus       107 ~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~  186 (751)
                      +..|++|+.|++|++||+..+          +++..+.+|...|.+++|   ++.+|++|+.||+|++||+++++..   
T Consensus       209 ~~~l~s~s~dg~i~~wd~~~~----------~~~~~~~~~~~~v~~~~~---~~~~l~~~~~dg~i~iwd~~~~~~~---  272 (445)
T 2ovr_B          209 EKRVVSGSRDATLRVWDIETG----------QCLHVLMGHVAAVRCVQY---DGRRVVSGAYDFMVKVWDPETETCL---  272 (445)
T ss_dssp             TTEEEEEETTSEEEEEESSSC----------CEEEEEECCSSCEEEEEE---CSSCEEEEETTSCEEEEEGGGTEEE---
T ss_pred             CCEEEEEeCCCEEEEEECCCC----------cEEEEEcCCcccEEEEEE---CCCEEEEEcCCCEEEEEECCCCcEe---
Confidence            357999999999999999864          557888999999999999   4578899999999999999876421   


Q ss_pred             CCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCcccc
Q 004468          187 GSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNY  266 (751)
Q Consensus       187 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~  266 (751)
                                            .....|...|.+++|   ++.++++|+.|+.|++||+++.+.+..+            
T Consensus       273 ----------------------~~~~~~~~~v~~~~~---~~~~l~~~~~d~~i~i~d~~~~~~~~~~------------  315 (445)
T 2ovr_B          273 ----------------------HTLQGHTNRVYSLQF---DGIHVVSGSLDTSIRVWDVETGNCIHTL------------  315 (445)
T ss_dssp             ----------------------EEECCCSSCEEEEEE---CSSEEEEEETTSCEEEEETTTCCEEEEE------------
T ss_pred             ----------------------EEecCCCCceEEEEE---CCCEEEEEeCCCeEEEEECCCCCEEEEE------------
Confidence                                  111236678999999   3679999999999999999987643322            


Q ss_pred             ccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCC
Q 004468          267 FCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG  312 (751)
Q Consensus       267 ~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~  312 (751)
                              .+|.. .+.++.+  ++++|++++.|+.|++||+.++.
T Consensus       316 --------~~~~~-~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~  350 (445)
T 2ovr_B          316 --------TGHQS-LTSGMEL--KDNILVSGNADSTVKIWDIKTGQ  350 (445)
T ss_dssp             --------CCCCS-CEEEEEE--ETTEEEEEETTSCEEEEETTTCC
T ss_pred             --------cCCcc-cEEEEEE--eCCEEEEEeCCCeEEEEECCCCc
Confidence                    22333 4777666  57799999999999999998854

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.94  E-value=2e-26  Score=249.75  Aligned_cols=207  Identities=14%  Similarity=0.140  Sum_probs=162.3

Q ss_pred             cCCCcEEEEEECCCCCEEEEE--eCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECC
Q 004468           48 GHQGCVNAISWNSKGSLLISG--SDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLS  125 (751)
Q Consensus        48 gH~~~V~~l~~s~dg~~LaSg--s~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~  125 (751)
                      .+...|.+++|||||++||+|  +.|++|+|||+.+++++..+  .|.+.|.+|+|+|+  +++|++++.| .+++|+..
T Consensus       131 ~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~--~~~~~V~~v~fspd--g~~l~s~s~~-~~~~~~~~  205 (365)
T 4h5i_A          131 NADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEI--ETRGEVKDLHFSTD--GKVVAYITGS-SLEVISTV  205 (365)
T ss_dssp             CTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEE--ECSSCCCEEEECTT--SSEEEEECSS-CEEEEETT
T ss_pred             CcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEe--CCCCceEEEEEccC--CceEEeccce-eEEEEEec
Confidence            355679999999999998755  47999999999999998887  47888999999999  8999999855 55666665


Q ss_pred             CCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCC----cEEEEecCCCCCCCCCCCCCCccceEEEecc
Q 004468          126 RFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG----TLRQHDFRQGSSCPPAGSSHQECRNILLDLR  201 (751)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg----~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~  201 (751)
                      .+..        ........|...|.+++|+| ++.++++++.|+    ++++||+......             ..   
T Consensus       206 ~~~~--------~~~~~~~~~~~~v~~v~fsp-dg~~l~~~s~d~~~~~~i~~~~~~~~~~~-------------~~---  260 (365)
T 4h5i_A          206 TGSC--------IARKTDFDKNWSLSKINFIA-DDTVLIAASLKKGKGIVLTKISIKSGNTS-------------VL---  260 (365)
T ss_dssp             TCCE--------EEEECCCCTTEEEEEEEEEE-TTEEEEEEEESSSCCEEEEEEEEETTEEE-------------EE---
T ss_pred             cCcc--------eeeeecCCCCCCEEEEEEcC-CCCEEEEEecCCcceeEEeecccccceec-------------ce---
Confidence            4321        12234567999999999999 668888999887    6888988765311             00   


Q ss_pred             cCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccc
Q 004468          202 CGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLH  281 (751)
Q Consensus       202 ~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  281 (751)
                           .......+...|++++|+| ++++|++|+.|+.|+|||+++++++..             +.      .+|.. .
T Consensus       261 -----~~~~~~~~~~~V~~~~~Sp-dg~~lasgs~D~~V~iwd~~~~~~~~~-------------~~------~gH~~-~  314 (365)
T 4h5i_A          261 -----RSKQVTNRFKGITSMDVDM-KGELAVLASNDNSIALVKLKDLSMSKI-------------FK------QAHSF-A  314 (365)
T ss_dssp             -----EEEEEESSCSCEEEEEECT-TSCEEEEEETTSCEEEEETTTTEEEEE-------------ET------TSSSS-C
T ss_pred             -----eeeeecCCCCCeEeEEECC-CCCceEEEcCCCEEEEEECCCCcEEEE-------------ec------CcccC-C
Confidence                 0111223667899999999 589999999999999999998754322             11      34555 6


Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004468          282 LTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (751)
Q Consensus       282 vt~v~fspdg~~Ll~~s~d~~I~lwdl~~  310 (751)
                      |++|+|||||++|++++.|++|+|||+..
T Consensus       315 V~~v~fSpdg~~laS~S~D~tvrvw~ip~  343 (365)
T 4h5i_A          315 ITEVTISPDSTYVASVSAANTIHIIKLPL  343 (365)
T ss_dssp             EEEEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred             EEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence            99999999999999999999999999975

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.94  E-value=1.6e-26  Score=253.31  Aligned_cols=282  Identities=11%  Similarity=0.019  Sum_probs=175.6

Q ss_pred             cCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEE----ecccCCcceEEEEEecCC------CCcEEEEEECCC
Q 004468           48 GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHS----IETGHSANVFCTKFVPET------SDELVVSGAGDA  117 (751)
Q Consensus        48 gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~----l~~~h~~~V~~v~fsp~s------~~~~l~sgs~Dg  117 (751)
                      .|.+.+....+++++.+||+|+.|++|+|||..++.....    ...+|.+.|++|+|+|..      ++++||||+.|+
T Consensus        87 ~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~  166 (393)
T 4gq1_A           87 LHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDC  166 (393)
T ss_dssp             ----------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTS
T ss_pred             ccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCC
Confidence            3444444455555677899999999999999988765332    237999999999999821      178999999999


Q ss_pred             cEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEE
Q 004468          118 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNIL  197 (751)
Q Consensus       118 ~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l  197 (751)
                      +|+|||+...          .++..+..|...|.+++|+|+++.+|++++.||+|++||+++++................
T Consensus       167 tv~~Wd~~~~----------~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~  236 (393)
T 4gq1_A          167 TLIIWRLTDE----------GPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWL  236 (393)
T ss_dssp             EEEEEEEETT----------EEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCS
T ss_pred             eEEEEECCCC----------ceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceE
Confidence            9999999754          446677789999999999997777999999999999999998865432211111111111


Q ss_pred             EecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCc
Q 004468          198 LDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGR  277 (751)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  277 (751)
                      +...............+...+.++.|++.++..|++++.|+.|++||+...+....+.........+ .+.+...... .
T Consensus       237 ~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~-~  314 (393)
T 4gq1_A          237 LTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPK-NLLPNVQGIS-L  314 (393)
T ss_dssp             EEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC--------------------CCSCSEEEEC-S
T ss_pred             EecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccE-EEcccccccc-c
Confidence            1111111111222345677899999986578999999999999999998776544332211111111 1111100000 1


Q ss_pred             cccceEEEEEcC--CCCEEEEEeCCCcEEEEECCCCCcceeeeecCCCceeEEeCCCCCCcccCCCc
Q 004468          278 SSLHLTHVTFSP--NGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQPPI  342 (751)
Q Consensus       278 ~~~~vt~v~fsp--dg~~Ll~~s~d~~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~  342 (751)
                      ....+. +.|+|  ++.++++|+.|+.|+|||+.++........+...+..++|+|+.+.++.....
T Consensus       315 ~~~~~~-~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~  380 (393)
T 4gq1_A          315 FPSLLG-ACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEG  380 (393)
T ss_dssp             SCCSSC-CEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESS
T ss_pred             cCccee-EEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCC
Confidence            111233 34444  34456667789999999999988777777888899999999999888766433

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.94  E-value=2.1e-25  Score=246.65  Aligned_cols=212  Identities=12%  Similarity=0.053  Sum_probs=164.1

Q ss_pred             ccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEec----ccCCcceEEEEEecCCCCcEEEEE
Q 004468           38 RRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIE----TGHSANVFCTKFVPETSDELVVSG  113 (751)
Q Consensus        38 ~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~----~~h~~~V~~v~fsp~s~~~~l~sg  113 (751)
                      .+++.+..+..+. .+.+++|+|++.++++++.|+.|++||+.+++.+..+.    .+|.+.|.+++|+|+  +.+++++
T Consensus       111 ~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~s~  187 (433)
T 3bws_A          111 ITHRFISRFKTGF-QPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEH--NELWVSQ  187 (433)
T ss_dssp             CSEEEEEEEECSS-CBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGG--TEEEEEE
T ss_pred             CcceEEEEEcCCC-CceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCC--CEEEEEE
Confidence            3445666676654 45699999988888999999999999999988876331    478999999999998  7999999


Q ss_pred             ECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCcc
Q 004468          114 AGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQEC  193 (751)
Q Consensus       114 s~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~  193 (751)
                      +.|+.|++||+...          +.+..+..|...+.+++|+|++..++++++.|+.|++||+++++..          
T Consensus       188 ~~d~~v~~~d~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~----------  247 (433)
T 3bws_A          188 MQANAVHVFDLKTL----------AYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEI----------  247 (433)
T ss_dssp             GGGTEEEEEETTTC----------CEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEE----------
T ss_pred             CCCCEEEEEECCCc----------eEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEE----------
Confidence            99999999999864          4567777899999999999965555567778999999999876421          


Q ss_pred             ceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEe--------CCCeEEEEeCCCCCCccccCCCCCCCCccc
Q 004468          194 RNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGG--------SDAFARLYDRRMLPPLTSCQKRMSPPPCVN  265 (751)
Q Consensus       194 ~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs--------~D~~IriwD~~~~~~~~~~~~~~~~~~~~~  265 (751)
                          ...           . ....+.+++|+|+ +.++++++        .|+.|++||+++.+.+...           
T Consensus       248 ----~~~-----------~-~~~~~~~~~~~~~-g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~-----------  299 (433)
T 3bws_A          248 ----RKT-----------D-KIGLPRGLLLSKD-GKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI-----------  299 (433)
T ss_dssp             ----EEC-----------C-CCSEEEEEEECTT-SSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE-----------
T ss_pred             ----EEe-----------c-CCCCceEEEEcCC-CCEEEEEECCCCccccCCCeEEEEECCCCcEEeec-----------
Confidence                110           0 1234889999995 67888777        5889999999875432111           


Q ss_pred             cccccccccCCccccceEEEEEcCCCCEEE-EEeCCCcEEEEECCCC
Q 004468          266 YFCPMHLSEHGRSSLHLTHVTFSPNGEEVL-LSYSGEHVYLMDVNHA  311 (751)
Q Consensus       266 ~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll-~~s~d~~I~lwdl~~~  311 (751)
                                .+.. .+.+++|+|+|++|+ +++.++.|++||+.++
T Consensus       300 ----------~~~~-~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~  335 (433)
T 3bws_A          300 ----------GPPG-NKRHIVSGNTENKIYVSDMCCSKIEVYDLKEK  335 (433)
T ss_dssp             ----------EEEE-CEEEEEECSSTTEEEEEETTTTEEEEEETTTT
T ss_pred             ----------cCCC-CcceEEECCCCCEEEEEecCCCEEEEEECCCC
Confidence                      1112 488999999998665 5578999999999874

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.94  E-value=9.7e-26  Score=250.15  Aligned_cols=259  Identities=13%  Similarity=0.166  Sum_probs=180.2

Q ss_pred             cccccccchhhhcc---------ccccEEeccCC------------CcEEEEEECCCC--CEEEEEeCCCcEEEEeCCCC
Q 004468           26 VNHSLQMHSSLVRR---------LSQERELEGHQ------------GCVNAISWNSKG--SLLISGSDDTHINVWSYSSR   82 (751)
Q Consensus        26 ~~~~l~~~~~~i~~---------~~~~~~L~gH~------------~~V~~l~~s~dg--~~LaSgs~Dg~I~IWd~~~~   82 (751)
                      .+..+++|+....+         .++..++.+|.            +.|++|+|+|++  .+|++|+.|++|+|||+.++
T Consensus        48 ~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~  127 (447)
T 3dw8_B           48 KGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISER  127 (447)
T ss_dssp             TTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEE
T ss_pred             CCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccc
Confidence            45677777643222         33678899998            889999999998  89999999999999998764


Q ss_pred             eEE---------------------------------------EEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEE
Q 004468           83 KLL---------------------------------------HSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFN  123 (751)
Q Consensus        83 ~~~---------------------------------------~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd  123 (751)
                      ...                                       ..+..+|...|.+++|+|+  +++|++| .|+.|+|||
T Consensus       128 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~s~-~d~~i~iwd  204 (447)
T 3dw8_B          128 DKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSD--YETYLSA-DDLRINLWH  204 (447)
T ss_dssp             EEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTT--SSEEEEE-CSSEEEEEE
T ss_pred             cCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCC--CCEEEEe-CCCeEEEEE
Confidence            432                                       1333689999999999998  8999998 799999999


Q ss_pred             CCCCCCCCCCCCCCCCce-------eecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceE
Q 004468          124 LSRFSGRGLDDNAITPSA-------LYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNI  196 (751)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~-------~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~  196 (751)
                      +....         ..+.       .+.+|...|.+++|+|+++.+|++|+.||+|++||+++++.+...        ..
T Consensus       205 ~~~~~---------~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~--------~~  267 (447)
T 3dw8_B          205 LEITD---------RSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRH--------SK  267 (447)
T ss_dssp             TTEEE---------EEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTT--------CE
T ss_pred             CCCCC---------ceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccce--------ee
Confidence            98421         1122       467899999999999955589999999999999999987642100        00


Q ss_pred             EEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCC-CCCccccCCCCCCCCccccccccccccC
Q 004468          197 LLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM-LPPLTSCQKRMSPPPCVNYFCPMHLSEH  275 (751)
Q Consensus       197 l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (751)
                      .+...... ........+...|.+++|+| ++.+|++++. +.|++||+++ .+++..+.........+...   .   .
T Consensus       268 ~~~~~~~~-~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~---~---~  338 (447)
T 3dw8_B          268 LFEEPEDP-SNRSFFSEIISSISDVKFSH-SGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSL---Y---E  338 (447)
T ss_dssp             EECCC------CCHHHHHTTCEEEEEECT-TSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHH---H---H
T ss_pred             EeccCCCc-cccccccccCceEEEEEECC-CCCEEEEeeC-CeEEEEeCCCCccccceeecccccccccccc---c---c
Confidence            11000000 00000011224899999999 5899999999 9999999987 55443332110000000000   0   0


Q ss_pred             CccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCCc
Q 004468          276 GRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGG  313 (751)
Q Consensus       276 g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~  313 (751)
                      ...-..+..++|+|+|++|++++.|+.|+|||+.++..
T Consensus       339 ~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~  376 (447)
T 3dw8_B          339 NDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRD  376 (447)
T ss_dssp             TSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCE
T ss_pred             ccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcc
Confidence            00001244599999999999999999999999998653

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.94  E-value=3.2e-25  Score=245.90  Aligned_cols=243  Identities=19%  Similarity=0.240  Sum_probs=187.5

Q ss_pred             ccccccchhhh--------ccccccEEeccCCCcEEEEEECCCCC-EEEEEeCCCcEEEEeCCCCeE-------EEEecc
Q 004468           27 NHSLQMHSSLV--------RRLSQERELEGHQGCVNAISWNSKGS-LLISGSDDTHINVWSYSSRKL-------LHSIET   90 (751)
Q Consensus        27 ~~~l~~~~~~i--------~~~~~~~~L~gH~~~V~~l~~s~dg~-~LaSgs~Dg~I~IWd~~~~~~-------~~~l~~   90 (751)
                      +..+++|+...        ...++...+.+|.+.|++|+|+|++. +|++|+.||+|+||++..+..       ...+ .
T Consensus       150 dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~-~  228 (430)
T 2xyi_A          150 SSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIF-T  228 (430)
T ss_dssp             SSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEE-C
T ss_pred             CCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceee-c
Confidence            45677776543        23678899999999999999999998 999999999999999987322       3344 6


Q ss_pred             cCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCC
Q 004468           91 GHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG  170 (751)
Q Consensus        91 ~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg  170 (751)
                      +|...|.+++|+|.. +.+|++++.|+.|++||+.....       ..++..+..|...|++++|+|++..+|++|+.||
T Consensus       229 ~h~~~v~~v~~~p~~-~~~l~s~~~dg~i~i~d~~~~~~-------~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg  300 (430)
T 2xyi_A          229 GHTAVVEDVAWHLLH-ESLFGSVADDQKLMIWDTRNNNT-------SKPSHTVDAHTAEVNCLSFNPYSEFILATGSADK  300 (430)
T ss_dssp             CCSSCEEEEEECSSC-TTEEEEEETTSEEEEEETTCSCS-------SSCSEEEECCSSCEEEEEECSSCTTEEEEEETTS
T ss_pred             CCCCCEeeeEEeCCC-CCEEEEEeCCCeEEEEECCCCCC-------CcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCC
Confidence            899999999999954 78999999999999999986421       1456778899999999999997767899999999


Q ss_pred             cEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCC
Q 004468          171 TLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPP  250 (751)
Q Consensus       171 ~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~  250 (751)
                      +|++||++.....                        +.....|...|++++|+|++..+|++++.|+.|+|||++....
T Consensus       301 ~v~vwd~~~~~~~------------------------~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~  356 (430)
T 2xyi_A          301 TVALWDLRNLKLK------------------------LHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGE  356 (430)
T ss_dssp             EEEEEETTCTTSC------------------------SEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTC
T ss_pred             eEEEEeCCCCCCC------------------------eEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCcc
Confidence            9999999985421                        1111236678999999997667899999999999999987432


Q ss_pred             ccccCC-CCCCCCccccccccccccCCccccceEEEEEcCCCC-EEEEEeCCCcEEEEECCC
Q 004468          251 LTSCQK-RMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGE-EVLLSYSGEHVYLMDVNH  310 (751)
Q Consensus       251 ~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~-~Ll~~s~d~~I~lwdl~~  310 (751)
                      ...... ...++..+..+       .+|.. .|++++|+|+++ +|++++.|+.|+||++..
T Consensus       357 ~~~~~~~~~~~~~~~~~~-------~~h~~-~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~  410 (430)
T 2xyi_A          357 EQSTEDAEDGPPELLFIH-------GGHTA-KISDFSWNPNEPWIICSVSEDNIMQVWQMAE  410 (430)
T ss_dssp             CCCHHHHHHCCTTEEEEC-------CCCSS-CEEEEEECSSSTTEEEEEETTSEEEEEEECH
T ss_pred             ccCccccccCCcceEEEc-------CCCCC-CceEEEECCCCCCEEEEEECCCCEEEeEccc
Confidence            110000 00011111111       23443 599999999999 888999999999999987

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.93  E-value=1.3e-24  Score=228.19  Aligned_cols=240  Identities=18%  Similarity=0.192  Sum_probs=196.5

Q ss_pred             cccccccchhhhccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCC---eEEEEecccCCcceEEEEEe
Q 004468           26 VNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSR---KLLHSIETGHSANVFCTKFV  102 (751)
Q Consensus        26 ~~~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~---~~~~~l~~~h~~~V~~v~fs  102 (751)
                      .+..+++|+.  ...+....+.+|.+.|++++|+|++++|++|+.|+.|++|++...   +.+..+ .+|...|.+++|.
T Consensus        37 ~dg~v~vw~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~  113 (313)
T 3odt_A           37 RDGTVRLWSK--DDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTL-IGHQGNVCSLSFQ  113 (313)
T ss_dssp             TTSEEEEEEE--SSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEE-CCCSSCEEEEEEE
T ss_pred             cCCcEEEEEC--CCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccch-hhcccCEEEEEec
Confidence            4667888875  556678889999999999999999999999999999999998654   556666 7899999999993


Q ss_pred             cCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCC
Q 004468          103 PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSS  182 (751)
Q Consensus       103 p~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~  182 (751)
                          +.+|++++.|+.|++||..            ..+..+..|...|.+++|.|.++.+|++++.||.|++||..... 
T Consensus       114 ----~~~l~~~~~d~~i~~~d~~------------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-  176 (313)
T 3odt_A          114 ----DGVVISGSWDKTAKVWKEG------------SLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDKVI-  176 (313)
T ss_dssp             ----TTEEEEEETTSEEEEEETT------------EEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETTEEE-
T ss_pred             ----CCEEEEEeCCCCEEEEcCC------------cEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecCceE-
Confidence                5799999999999999932            55788889999999999998777899999999999999943211 


Q ss_pred             CCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCC
Q 004468          183 CPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPP  262 (751)
Q Consensus       183 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~  262 (751)
                                     .          .....+...+.+++|+|+ +. +++++.|+.|++||+++.+.+..+        
T Consensus       177 ---------------~----------~~~~~~~~~i~~~~~~~~-~~-~~~~~~dg~i~i~d~~~~~~~~~~--------  221 (313)
T 3odt_A          177 ---------------K----------TFSGIHNDVVRHLAVVDD-GH-FISCSNDGLIKLVDMHTGDVLRTY--------  221 (313)
T ss_dssp             ---------------E----------EECSSCSSCEEEEEEEET-TE-EEEEETTSEEEEEETTTCCEEEEE--------
T ss_pred             ---------------E----------EEeccCcccEEEEEEcCC-Ce-EEEccCCCeEEEEECCchhhhhhh--------
Confidence                           0          001115678999999995 45 999999999999999876543322        


Q ss_pred             ccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcceeeeecCCCceeEEeCCCCC
Q 004468          263 CVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLN  334 (751)
Q Consensus       263 ~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp~~~  334 (751)
                                  .+|.. .|++++|+|++ .|++++.|+.|++||+.++........+...+..++|+|+..
T Consensus       222 ------------~~~~~-~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~  279 (313)
T 3odt_A          222 ------------EGHES-FVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD  279 (313)
T ss_dssp             ------------ECCSS-CEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC
T ss_pred             ------------hcCCc-eEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC
Confidence                        22333 59999999999 689999999999999999876666666777888999999876

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.93  E-value=8e-25  Score=260.05  Aligned_cols=240  Identities=16%  Similarity=0.197  Sum_probs=193.2

Q ss_pred             cccccccchhhhccccccEEeccCCCcEEEEEECCC--CCEEEEEeCCCcEEEEeCCCCe--EEEEecccCCcceEEEEE
Q 004468           26 VNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSK--GSLLISGSDDTHINVWSYSSRK--LLHSIETGHSANVFCTKF  101 (751)
Q Consensus        26 ~~~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~d--g~~LaSgs~Dg~I~IWd~~~~~--~~~~l~~~h~~~V~~v~f  101 (751)
                      .+..+++|+..-.+.++..++.+|.+.|++++|+|+  +++|++|+.||+|+|||+.+++  .+..+ .+|...|.+++|
T Consensus        29 ~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~-~~h~~~V~~v~~  107 (753)
T 3jro_A           29 SDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVH-AVHSASVNSVQW  107 (753)
T ss_dssp             TTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEE-CCCSSCEEEEEE
T ss_pred             CCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccc-cCCCCCeEEEEE
Confidence            467888888665677888999999999999999988  9999999999999999999886  56666 789999999999


Q ss_pred             ecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecC------------CCCEEEEEeCC
Q 004468          102 VPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVG------------NPHVVWSASED  169 (751)
Q Consensus       102 sp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~------------~~~~l~s~s~D  169 (751)
                      +|+..+.+|++|+.||.|++||+.....        .....+.+|...|.+++|+|.            ++.+|++|+.|
T Consensus       108 sp~~~~~~l~sgs~dg~I~vwdl~~~~~--------~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~d  179 (753)
T 3jro_A          108 APHEYGPLLLVASSDGKVSVVEFKENGT--------TSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGAD  179 (753)
T ss_dssp             CCGGGCSEEEEEETTSEEEEEECCSSSC--------CCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETT
T ss_pred             CCCCCCCEEEEEeCCCcEEEEEeecCCC--------cceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECC
Confidence            9984358999999999999999986432        235567889999999999995            47889999999


Q ss_pred             CcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCC--CcEEEEEeCCCeEEEEeCCC
Q 004468          170 GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR--PHLLLVGGSDAFARLYDRRM  247 (751)
Q Consensus       170 g~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~--~~~l~sgs~D~~IriwD~~~  247 (751)
                      |+|++||++++...           ..          .+.....|...|++++|+|++  +.+|++|+.|+.|++||+++
T Consensus       180 g~I~iwd~~~~~~~-----------~~----------~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~  238 (753)
T 3jro_A          180 NLVKIWKYNSDAQT-----------YV----------LESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDN  238 (753)
T ss_dssp             SCEEEEEEETTTTE-----------EE----------EEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESS
T ss_pred             CeEEEEeccCCccc-----------ce----------eeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCC
Confidence            99999999886421           00          011223467889999999964  79999999999999999987


Q ss_pred             CCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 004468          248 LPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (751)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~  311 (751)
                      .......           ..    ....+|.. .|++++|+|+|++|++++.||.|++||+..+
T Consensus       239 ~~~~~~~-----------~~----~~~~~~~~-~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~  286 (753)
T 3jro_A          239 EQGPWKK-----------TL----LKEEKFPD-VLWRASWSLSGNVLALSGGDNKVTLWKENLE  286 (753)
T ss_dssp             SSSCCBC-----------CB----SSSSCCSS-CCCCEEECTTTCCEEEECSSSCEECCBCCSS
T ss_pred             CCCccee-----------EE----eccCCCCC-ceEEEEEcCCCCEEEEEcCCCEEEEEecCCC
Confidence            5421100           00    00012333 5999999999999999999999999999853

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.93  E-value=4.2e-24  Score=238.22  Aligned_cols=252  Identities=12%  Similarity=0.090  Sum_probs=184.6

Q ss_pred             cEEeccCCCcEEEEEECCCCCEE-EEEeCCCcEEEEeCC--CCeEEEEecc-cCCcceEEEEEecCCCCcEEEEEECCCc
Q 004468           43 ERELEGHQGCVNAISWNSKGSLL-ISGSDDTHINVWSYS--SRKLLHSIET-GHSANVFCTKFVPETSDELVVSGAGDAE  118 (751)
Q Consensus        43 ~~~L~gH~~~V~~l~~s~dg~~L-aSgs~Dg~I~IWd~~--~~~~~~~l~~-~h~~~V~~v~fsp~s~~~~l~sgs~Dg~  118 (751)
                      ...+.+|.+.|++++|+|+|++| |+|+.||.|+|||+.  ++..+..+.. .|...|.+++|+|+  +.+|++|+.|+.
T Consensus        95 ~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~--~~~l~~~~~~g~  172 (450)
T 2vdu_B           95 GLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAED--DTTVIIADKFGD  172 (450)
T ss_dssp             -----CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTT--SSEEEEEETTSE
T ss_pred             CCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCC--CCEEEEEeCCCc
Confidence            34556889999999999999996 899999999999998  7877777621 67799999999999  899999999999


Q ss_pred             EEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecC--CCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceE
Q 004468          119 VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVG--NPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNI  196 (751)
Q Consensus       119 V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~--~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~  196 (751)
                      |++|++.......      .+...+.+|...|.+++|+|+  ++.+|++|+.|++|++||+++++..           . 
T Consensus       173 v~~~~~~~~~~~~------~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~-----------~-  234 (450)
T 2vdu_B          173 VYSIDINSIPEEK------FTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIV-----------D-  234 (450)
T ss_dssp             EEEEETTSCCCSS------CCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCE-----------E-
T ss_pred             EEEEecCCccccc------ccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCcee-----------e-
Confidence            9999998643210      134577899999999999994  1689999999999999999876522           0 


Q ss_pred             EEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccc-ccc---
Q 004468          197 LLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCP-MHL---  272 (751)
Q Consensus       197 l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---  272 (751)
                                  ....+|...|.+++|+  ++.+|++|+.|+.|++||+++++.+..+.....    +..+.. .+.   
T Consensus       235 ------------~~~~~h~~~v~~~~~s--d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~----~~~~~~~~~~~~~  296 (450)
T 2vdu_B          235 ------------KWLFGHKHFVSSICCG--KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSL----IKPYLNDQHLAPP  296 (450)
T ss_dssp             ------------EECCCCSSCEEEEEEC--STTEEEEEESSSEEEEEETTTCCEEEEEECHHH----HGGGCCTTSBC--
T ss_pred             ------------eeecCCCCceEEEEEC--CCCEEEEEeCCCeEEEEECCCCcEeeeecchhh----hhhhhhhcccccc
Confidence                        0122367889999999  579999999999999999998875544321100    000000 000   


Q ss_pred             ----ccCCccccceEEEEEcCCCCEEEEEe-CCCcEEEEEC--CCCC--cceeeeecCCCceeEEeCCC
Q 004468          273 ----SEHGRSSLHLTHVTFSPNGEEVLLSY-SGEHVYLMDV--NHAG--GRAMRYTVGDASKIMSFTPT  332 (751)
Q Consensus       273 ----~~~g~~~~~vt~v~fspdg~~Ll~~s-~d~~I~lwdl--~~~~--~~~~~~~~~~~~~~~~~sp~  332 (751)
                          .........|.+++|+|++++|++++ .++.|+||++  ..+.  .....+.....+..++|+|.
T Consensus       297 ~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~  365 (450)
T 2vdu_B          297 RFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFPYNVISLSAHND  365 (450)
T ss_dssp             --------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECSSCEEEEEEETT
T ss_pred             cccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccCCceEEEEecCC
Confidence                00001123599999999999999999 8999999999  4432  11222223366778888883

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.92  E-value=1.1e-23  Score=229.55  Aligned_cols=184  Identities=16%  Similarity=0.177  Sum_probs=140.6

Q ss_pred             CEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEE-EEEECCCcEEEEECCCCCCCCCCCCCCCCce
Q 004468           63 SLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELV-VSGAGDAEVRLFNLSRFSGRGLDDNAITPSA  141 (751)
Q Consensus        63 ~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l-~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~  141 (751)
                      .++++++.|+.|++||+.+++.+..+ ..|. .+.+++|+|+  +++| ++++.|+.|++||+.++          +.+.
T Consensus         3 ~l~vs~~~d~~v~v~d~~~~~~~~~~-~~~~-~~~~~~~s~d--g~~l~~~~~~d~~i~v~d~~~~----------~~~~   68 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTSNKVTATI-PVGS-NPMGAVISPD--GTKVYVANAHSNDVSIIDTATN----------NVIA   68 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEE-ECSS-SEEEEEECTT--SSEEEEEEGGGTEEEEEETTTT----------EEEE
T ss_pred             EEEEEcCCCCEEEEEECCCCeEEEEe-ecCC-CcceEEECCC--CCEEEEECCCCCeEEEEECCCC----------eEEE
Confidence            47889999999999999999998888 5554 5899999999  6765 77889999999999864          4455


Q ss_pred             eecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEE
Q 004468          142 LYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSC  221 (751)
Q Consensus       142 ~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i  221 (751)
                      .+..+. .|.+++|+|++..++++++.|++|++||+.+++..           . .+.              ....+.++
T Consensus        69 ~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~-----------~-~~~--------------~~~~~~~~  121 (391)
T 1l0q_A           69 TVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVA-----------G-TVK--------------TGKSPLGL  121 (391)
T ss_dssp             EEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE-----------E-EEE--------------CSSSEEEE
T ss_pred             EEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCCeEE-----------E-EEe--------------CCCCcceE
Confidence            665544 89999999955445567778899999999876521           0 110              12357899


Q ss_pred             EEeCCCCcEE-EEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEE-EEeC
Q 004468          222 DISSTRPHLL-LVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVL-LSYS  299 (751)
Q Consensus       222 ~~sp~~~~~l-~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll-~~s~  299 (751)
                      +|+|+ ++++ ++++.|+.|++||+++.+.+..+                    ..+.  .+..++|+|+|++|+ +++.
T Consensus       122 ~~s~d-g~~l~~~~~~~~~v~~~d~~~~~~~~~~--------------------~~~~--~~~~~~~~~dg~~l~~~~~~  178 (391)
T 1l0q_A          122 ALSPD-GKKLYVTNNGDKTVSVINTVTKAVINTV--------------------SVGR--SPKGIAVTPDGTKVYVANFD  178 (391)
T ss_dssp             EECTT-SSEEEEEETTTTEEEEEETTTTEEEEEE--------------------ECCS--SEEEEEECTTSSEEEEEETT
T ss_pred             EECCC-CCEEEEEeCCCCEEEEEECCCCcEEEEE--------------------ecCC--CcceEEECCCCCEEEEEeCC
Confidence            99996 5555 78888999999999876433221                    1111  378999999999884 6667


Q ss_pred             CCcEEEEECCC
Q 004468          300 GEHVYLMDVNH  310 (751)
Q Consensus       300 d~~I~lwdl~~  310 (751)
                      ++.|++||+.+
T Consensus       179 ~~~v~~~d~~~  189 (391)
T 1l0q_A          179 SMSISVIDTVT  189 (391)
T ss_dssp             TTEEEEEETTT
T ss_pred             CCEEEEEECCC
Confidence            89999999877

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.92  E-value=3.4e-24  Score=228.50  Aligned_cols=265  Identities=7%  Similarity=-0.001  Sum_probs=188.7

Q ss_pred             cccccccchhhhcc-ccccEEeccCCCcEEEEEECCCCC-EEEEEeCCCcEEEEeC-CCCeEEEEeccc--CCcceEEEE
Q 004468           26 VNHSLQMHSSLVRR-LSQERELEGHQGCVNAISWNSKGS-LLISGSDDTHINVWSY-SSRKLLHSIETG--HSANVFCTK  100 (751)
Q Consensus        26 ~~~~l~~~~~~i~~-~~~~~~L~gH~~~V~~l~~s~dg~-~LaSgs~Dg~I~IWd~-~~~~~~~~l~~~--h~~~V~~v~  100 (751)
                      .+..+++|+..... ......+.+|.+.|++++|+|+++ +|++|+.||.|++||+ .+++. ..+ .+  |...|.+++
T Consensus        31 ~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~-~~~-~~~~~~~~v~~l~  108 (342)
T 1yfq_A           31 WDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSF-QAL-TNNEANLGICRIC  108 (342)
T ss_dssp             TTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSE-EEC-BSCCCCSCEEEEE
T ss_pred             CCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCce-Eec-cccCCCCceEEEE
Confidence            45677777754332 123456679999999999999999 9999999999999999 87755 455 67  999999999


Q ss_pred             EecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCC-
Q 004468          101 FVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQ-  179 (751)
Q Consensus       101 fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~-  179 (751)
                      |+|   +.+|++++.|+.|++||+........ ....+++..+. |...|.+++|+| +.  +++++.||.|++||+++ 
T Consensus       109 ~~~---~~~l~s~~~d~~i~iwd~~~~~~~~~-~~~~~~~~~~~-~~~~v~~~~~~~-~~--l~~~~~d~~i~i~d~~~~  180 (342)
T 1yfq_A          109 KYG---DDKLIAASWDGLIEVIDPRNYGDGVI-AVKNLNSNNTK-VKNKIFTMDTNS-SR--LIVGMNNSQVQWFRLPLC  180 (342)
T ss_dssp             EET---TTEEEEEETTSEEEEECHHHHTTBCE-EEEESCSSSSS-SCCCEEEEEECS-SE--EEEEESTTEEEEEESSCC
T ss_pred             eCC---CCEEEEEcCCCeEEEEcccccccccc-cccCCeeeEEe-eCCceEEEEecC-Cc--EEEEeCCCeEEEEECCcc
Confidence            999   37999999999999999985100000 00003345555 899999999998 33  88999999999999988 


Q ss_pred             CCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeC-CCCcEEEEEeCCCeEEEEeCCCC------CCcc
Q 004468          180 GSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISS-TRPHLLLVGGSDAFARLYDRRML------PPLT  252 (751)
Q Consensus       180 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp-~~~~~l~sgs~D~~IriwD~~~~------~~~~  252 (751)
                      +....           ..            ....+...+.+++|+| + +.++++++.|+.|++||++..      +...
T Consensus       181 ~~~~~-----------~~------------~~~~~~~~i~~i~~~~~~-~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~  236 (342)
T 1yfq_A          181 EDDNG-----------TI------------EESGLKYQIRDVALLPKE-QEGYACSSIDGRVAVEFFDDQGDDYNSSKRF  236 (342)
T ss_dssp             TTCCC-----------EE------------EECSCSSCEEEEEECSGG-GCEEEEEETTSEEEEEECCTTCCSTTCTTCE
T ss_pred             ccccc-----------ee------------eecCCCCceeEEEECCCC-CCEEEEEecCCcEEEEEEcCCCcccccccce
Confidence            54210           00            0112456799999999 6 689999999999999999865      2221


Q ss_pred             ccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcceeeeec-CCCceeEEeCC
Q 004468          253 SCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTV-GDASKIMSFTP  331 (751)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~~~~~-~~~~~~~~~sp  331 (751)
                      .+.....           .....+|. ..|++++|+|++++|++++.|+.|++||+.++........+ ...+..++  |
T Consensus       237 ~~~~~~~-----------~~~~~~~~-~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~  302 (342)
T 1yfq_A          237 AFRCHRL-----------NLKDTNLA-YPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--C  302 (342)
T ss_dssp             EEECCCC-----------CTTCCSSC-CCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--E
T ss_pred             eeecccc-----------cccccccc-eeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--C
Confidence            1110000           00001122 26999999999999999999999999999986544444343 44555555  5


Q ss_pred             CCCCccc
Q 004468          332 TLNGLEL  338 (751)
Q Consensus       332 ~~~~~~~  338 (751)
                      +...+..
T Consensus       303 ~~~~l~s  309 (342)
T 1yfq_A          303 SDNILCL  309 (342)
T ss_dssp             CSSEEEE
T ss_pred             CCCeEEE
Confidence            5554433

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.92  E-value=1.2e-23  Score=225.85  Aligned_cols=266  Identities=14%  Similarity=0.155  Sum_probs=193.9

Q ss_pred             cccccccchhhhccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEE--ec
Q 004468           26 VNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKF--VP  103 (751)
Q Consensus        26 ~~~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~f--sp  103 (751)
                      .+..+++|+...........+.+|.+.|++++|+|++++|++|+.||.|+|||+.+++.+..  .+|...|.+++|  +|
T Consensus        62 ~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~--~~~~~~v~~~~~~~~~  139 (368)
T 3mmy_A           62 WANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQI--AQHDAPVKTIHWIKAP  139 (368)
T ss_dssp             TTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE--EECSSCEEEEEEEECS
T ss_pred             CCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCceee--ccccCceEEEEEEeCC
Confidence            35678888765434455588999999999999999999999999999999999999887764  479999999999  66


Q ss_pred             CCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCC
Q 004468          104 ETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSC  183 (751)
Q Consensus       104 ~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~  183 (751)
                      +  +.+|++|+.|+.|++||+...          +++..+..|. .+.++.+.+   ..+++++.|+.+++||++.....
T Consensus       140 ~--~~~l~~~~~dg~i~vwd~~~~----------~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~  203 (368)
T 3mmy_A          140 N--YSCVMTGSWDKTLKFWDTRSS----------NPMMVLQLPE-RCYCADVIY---PMAVVATAERGLIVYQLENQPSE  203 (368)
T ss_dssp             S--CEEEEEEETTSEEEEECSSCS----------SCSEEEECSS-CEEEEEEET---TEEEEEEGGGCEEEEECSSSCEE
T ss_pred             C--CCEEEEccCCCcEEEEECCCC----------cEEEEEecCC-CceEEEecC---CeeEEEeCCCcEEEEEeccccch
Confidence            6  789999999999999999864          4566776654 566676654   47788999999999999875411


Q ss_pred             CCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCC---CCcEEEEEeCCCeEEEEeCCCCCC---ccccCCC
Q 004468          184 PPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISST---RPHLLLVGGSDAFARLYDRRMLPP---LTSCQKR  257 (751)
Q Consensus       184 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~---~~~~l~sgs~D~~IriwD~~~~~~---~~~~~~~  257 (751)
                                   +..        +...  ....+.++.+.+.   .+..+++++.|+.|++||++....   +..+...
T Consensus       204 -------------~~~--------~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~  260 (368)
T 3mmy_A          204 -------------FRR--------IESP--LKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCH  260 (368)
T ss_dssp             -------------EEE--------CCCS--CSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECS
T ss_pred             -------------hhh--------cccc--ccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeee
Confidence                         110        1111  2233445555442   123499999999999999987632   1111000


Q ss_pred             CCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcceeeeecCCCceeEEeCCCCCCcc
Q 004468          258 MSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLE  337 (751)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp~~~~~~  337 (751)
                      ...        .......+| ...|++++|+|++++|++++.|+.|+|||+.++........+...+..++|+|+...+.
T Consensus       261 ~~~--------~~~~~~~~~-~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~  331 (368)
T 3mmy_A          261 RSN--------GTNTSAPQD-IYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFA  331 (368)
T ss_dssp             EEC------------CCCEE-ECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEE
T ss_pred             ecc--------ccccccccc-ccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEE
Confidence            000        000000111 12599999999999999999999999999998766666666778889999999988776


Q ss_pred             cCCC
Q 004468          338 LQPP  341 (751)
Q Consensus       338 ~~~~  341 (751)
                      ....
T Consensus       332 ~~s~  335 (368)
T 3mmy_A          332 YASS  335 (368)
T ss_dssp             EEEC
T ss_pred             EEec
Confidence            6543

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.92  E-value=3.3e-24  Score=223.87  Aligned_cols=202  Identities=12%  Similarity=0.063  Sum_probs=143.3

Q ss_pred             cEEEEEECCC----CCEEEEEeC--------------------CCcEEEEeC-CCCeEEEEecccCCcceEEEEEec-CC
Q 004468           52 CVNAISWNSK----GSLLISGSD--------------------DTHINVWSY-SSRKLLHSIETGHSANVFCTKFVP-ET  105 (751)
Q Consensus        52 ~V~~l~~s~d----g~~LaSgs~--------------------Dg~I~IWd~-~~~~~~~~l~~~h~~~V~~v~fsp-~s  105 (751)
                      .|++|+|+|+    ++++++++.                    |+.|++|++ .+++.+..+ .+|...+..++|+| +.
T Consensus       113 ~v~sla~spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~-~~~~~~v~~l~fs~~~g  191 (356)
T 2w18_A          113 EIRALFCSSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQ-FLMPPEETILTFAEVQG  191 (356)
T ss_dssp             EEEEECC------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEE-EECCCSSCEEEEEEEET
T ss_pred             ceEEEEECCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeee-ccCCCceeeEEeeccCC
Confidence            5566677778    788887664                    888888888 457777776 68888888888888 32


Q ss_pred             CCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccC---CceeEEEEecCCCCEE------------EEEeCCC
Q 004468          106 SDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHT---RRVKKLAVEVGNPHVV------------WSASEDG  170 (751)
Q Consensus       106 ~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~---~~V~~l~~sp~~~~~l------------~s~s~Dg  170 (751)
                      ++.+|+||+.|++|+|||+.++          ++++++.+|.   ..|.+++|+| ++.++            ++|+.|+
T Consensus       192 ~~~~LaSgS~D~TIkIWDl~TG----------k~l~tL~g~~~~v~~v~~vafSp-dG~~lvs~s~~~~~w~laSGs~D~  260 (356)
T 2w18_A          192 MQEALLGTTIMNNIVIWNLKTG----------QLLKKMHIDDSYQASVCHKAYSE-MGLLFIVLSHPCAKESESLRSPVF  260 (356)
T ss_dssp             STTEEEEEETTSEEEEEETTTC----------CEEEEEECCC---CCCEEEEEEE-TTEEEEEEC------------CCE
T ss_pred             CCceEEEecCCCcEEEEECCCC----------cEEEEEcCCCcceeeeEEEEECC-CCCEEEEeccCCCcceeeccCCCc
Confidence            3689999999999999999975          5578887654   4677889999 55654            6788999


Q ss_pred             cEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCC
Q 004468          171 TLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPP  250 (751)
Q Consensus       171 ~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~  250 (751)
                      +|++||..+++..           .++         .+..+.+|...+.+..++   +.++++|+.|++|+|||+.+++.
T Consensus       261 tIklWd~~tgk~l-----------~v~---------~~~~p~Gh~~~~lsg~~s---g~~lASgS~DgTIkIWDl~tGk~  317 (356)
T 2w18_A          261 QLIVINPKTTLSV-----------GVM---------LYCLPPGQAGRFLEGDVK---DHCAAAILTSGTIAIWDLLLGQC  317 (356)
T ss_dssp             EEEEEETTTTEEE-----------EEE---------EECCCTTCCCCEEEEEEE---TTEEEEEETTSCEEEEETTTCSE
T ss_pred             EEEEEECCCCEEE-----------EEE---------EeeccCCCcceeEccccC---CCEEEEEcCCCcEEEEECCCCcE
Confidence            9999999877522           111         011122333334444444   56899999999999999998764


Q ss_pred             ccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004468          251 LTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDV  308 (751)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl  308 (751)
                      +..+                    .+|....+..++|+|||++|++|+.|++|+|||+
T Consensus       318 l~tL--------------------~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          318 TALL--------------------PPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             EEEE--------------------CCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             EEEe--------------------cCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence            4332                    2444434567999999999999999999999995

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.92  E-value=7.6e-23  Score=222.83  Aligned_cols=219  Identities=8%  Similarity=0.111  Sum_probs=165.0

Q ss_pred             cccccccchhhhccccccEEeccCCCcEEEEEECCCCCEE-EEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecC
Q 004468           26 VNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLL-ISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPE  104 (751)
Q Consensus        26 ~~~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~~L-aSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~  104 (751)
                      .+..+++|+.  .+.++++.+.+|.. +.+++|+|+|++| ++++.|++|++||+.+++.+..+ ..|. .|.+++|+|+
T Consensus        10 ~d~~v~v~d~--~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~-~~~~-~v~~~~~spd   84 (391)
T 1l0q_A           10 ESDNISVIDV--TSNKVTATIPVGSN-PMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATV-PAGS-SPQGVAVSPD   84 (391)
T ss_dssp             TTTEEEEEET--TTTEEEEEEECSSS-EEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEE-ECSS-SEEEEEECTT
T ss_pred             CCCEEEEEEC--CCCeEEEEeecCCC-cceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEE-ECCC-CccceEECCC
Confidence            3566777764  45567778887754 8999999999976 67779999999999999998888 3343 8999999999


Q ss_pred             CCCcEE-EEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCC
Q 004468          105 TSDELV-VSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSC  183 (751)
Q Consensus       105 s~~~~l-~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~  183 (751)
                        +++| ++++.|+.|++||+..+          +.+..+.. ...+.+++|+|++..++++++.|+.|++||+++++..
T Consensus        85 --g~~l~~~~~~~~~v~v~d~~~~----------~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~  151 (391)
T 1l0q_A           85 --GKQVYVTNMASSTLSVIDTTSN----------TVAGTVKT-GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVI  151 (391)
T ss_dssp             --SSEEEEEETTTTEEEEEETTTT----------EEEEEEEC-SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred             --CCEEEEEECCCCEEEEEECCCC----------eEEEEEeC-CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEE
Confidence              6766 45667799999999864          33455554 4568999999955445578999999999999876521


Q ss_pred             CCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCc
Q 004468          184 PPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPC  263 (751)
Q Consensus       184 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~  263 (751)
                                 ..+   .            ....+.+++|+|++..++++++.|+.|++||+++.+....+.        
T Consensus       152 -----------~~~---~------------~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~--------  197 (391)
T 1l0q_A          152 -----------NTV---S------------VGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK--------  197 (391)
T ss_dssp             -----------EEE---E------------CCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE--------
T ss_pred             -----------EEE---e------------cCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe--------
Confidence                       011   0            123468999999643444778889999999998764322110        


Q ss_pred             cccccccccccCCccccceEEEEEcCCCCEEEEEe---CCCcEEEEECCC
Q 004468          264 VNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSY---SGEHVYLMDVNH  310 (751)
Q Consensus       264 ~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s---~d~~I~lwdl~~  310 (751)
                                   +. ..+.+++|+|+|++|++++   .++.|++||+.+
T Consensus       198 -------------~~-~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~  233 (391)
T 1l0q_A          198 -------------VE-AAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGT  233 (391)
T ss_dssp             -------------CS-SEEEEEEECTTSSEEEEEEECSSCCEEEEEETTT
T ss_pred             -------------cC-CCccceEECCCCCEEEEEecCcCCCcEEEEECCC
Confidence                         11 1488999999999999888   689999999877

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.92  E-value=1.8e-23  Score=218.21  Aligned_cols=219  Identities=16%  Similarity=0.175  Sum_probs=128.7

Q ss_pred             ccccccEEeccCCC-c---EEEEEECCCCC---EEEEEeCCCcEEEEeCCCC---eEEEEecccCCcceEEEEEecCCCC
Q 004468           38 RRLSQERELEGHQG-C---VNAISWNSKGS---LLISGSDDTHINVWSYSSR---KLLHSIETGHSANVFCTKFVPETSD  107 (751)
Q Consensus        38 ~~~~~~~~L~gH~~-~---V~~l~~s~dg~---~LaSgs~Dg~I~IWd~~~~---~~~~~l~~~h~~~V~~v~fsp~s~~  107 (751)
                      ..++++.+|+.-.+ |   |.++.|-.-|-   .+++++.+ .|++|++.++   ++++++ ..|..+|..|.|+|+. -
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~lw~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~-~   99 (356)
T 2w18_A           23 GNLQLVSELKNPSGSCSVDVSAMFWERAGCKEPCIITACED-VVSLWKALDAWQWEKLYTW-HFAEVPVLQIVPVPDV-Y   99 (356)
T ss_dssp             -CEEEEEEECCCCSSCEEEEEEEEEC----CEEEEEEEESS-EEEEEEESSSSBEEEEEEE-ECCSSCEEEECCCTTC-C
T ss_pred             ceeeeeehhcCCCCCeEEEEeeeeeccCCCCccEEEEeccc-eEEEcccCCCccceeeEEE-eccCceeEEEEEcCcc-c
Confidence            45667777776554 3   55677765443   67777765 8999999988   888888 8999999999999986 3


Q ss_pred             cEEEEEECCC-cEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEe--CCCcEEEEecCC-CCCC
Q 004468          108 ELVVSGAGDA-EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSAS--EDGTLRQHDFRQ-GSSC  183 (751)
Q Consensus       108 ~~l~sgs~Dg-~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s--~Dg~I~iwDlr~-~~~~  183 (751)
                      +++..+=..= .--|+-+.....    +..........+|...|..+   + +++++.+++  .|++|++|++.. ++. 
T Consensus       100 ~~~~~~~~~~~~~~v~sla~spd----~~~~~~~l~s~g~~~~v~~l---~-~g~lv~ss~~g~d~~V~~~~~s~dG~~-  170 (356)
T 2w18_A          100 NLVCVALGNLEIREIRALFCSSD----DESEKQVLLKSGNIKAVLGL---T-KRRLVSSSGTLSDQQVEVMTFAEDGGG-  170 (356)
T ss_dssp             SCEEEEECSSSEEEEEEECC----------CCEEEEEEEEEEEEEEE---T-TTEEEEEESSSTTCEEEEEEECTTSCE-
T ss_pred             ceeeeeeccccccceEEEEECCC----ccccccEEEeCCCeEEEEec---C-CCcEEEecccCCCCcEEEEEECCCCce-
Confidence            3443332211 112222221100    00001122223444444443   3 445554433  477777777744 221 


Q ss_pred             CCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeC--CCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCC
Q 004468          184 PPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISS--TRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPP  261 (751)
Q Consensus       184 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp--~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~  261 (751)
                                              +.....|...++.++|+|  .++.+|++|+.|++|||||+.+++.+..+.      
T Consensus       171 ------------------------~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~------  220 (356)
T 2w18_A          171 ------------------------KENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMH------  220 (356)
T ss_dssp             ------------------------EEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEE------
T ss_pred             ------------------------eeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEc------
Confidence                                    111112556677778877  346899999999999999999887544331      


Q ss_pred             CccccccccccccCCccccceEEEEEcCCCCEEEE------------EeCCCcEEEEECCC
Q 004468          262 PCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLL------------SYSGEHVYLMDVNH  310 (751)
Q Consensus       262 ~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~------------~s~d~~I~lwdl~~  310 (751)
                             ..+    .+ ...+.+++|+|+|+++++            |+.|++|++||..+
T Consensus       221 -------g~~----~~-v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~t  269 (356)
T 2w18_A          221 -------IDD----SY-QASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKT  269 (356)
T ss_dssp             -------CCC--------CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTT
T ss_pred             -------CCC----cc-eeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCC
Confidence                   100    01 124888999999998755            44566666666655

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.92  E-value=8e-24  Score=226.98  Aligned_cols=223  Identities=9%  Similarity=0.070  Sum_probs=169.3

Q ss_pred             cccccccchhhhccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCC---------CCeEEEEecccCCcce
Q 004468           26 VNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYS---------SRKLLHSIETGHSANV   96 (751)
Q Consensus        26 ~~~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~---------~~~~~~~l~~~h~~~V   96 (751)
                      .+..+++|+.  .+.+.+.++.  .+.|+++.|+|+   |++|+.|++|++|+..         +++.+..+..+|.+.|
T Consensus        56 ~Dg~v~iwd~--~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v  128 (343)
T 3lrv_A           56 EDGALHFTQL--KDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEI  128 (343)
T ss_dssp             ETTEEEEEEE--SSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCE
T ss_pred             CCCcEEEEEC--CCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCE
Confidence            4566777764  3344555555  567888999998   9999999999999665         5555666656888999


Q ss_pred             EEEEEec--CCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceee-cccCCceeEEEEecCCCCEEEEEeCCCcEE
Q 004468           97 FCTKFVP--ETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALY-QCHTRRVKKLAVEVGNPHVVWSASEDGTLR  173 (751)
Q Consensus        97 ~~v~fsp--~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~-~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~  173 (751)
                      .+++|+|  +  +++|++|+.|++|++||+..+          +++..+ ..|...|.+++|+| ++.+|++|+.||+|+
T Consensus       129 ~~~~~~~~~~--~~~l~s~s~dg~i~~wd~~~~----------~~~~~~~~~~~~~i~~~~~~p-dg~~lasg~~dg~i~  195 (343)
T 3lrv_A          129 IYMYGHNEVN--TEYFIWADNRGTIGFQSYEDD----------SQYIVHSAKSDVEYSSGVLHK-DSLLLALYSPDGILD  195 (343)
T ss_dssp             EEEECCC-----CCEEEEEETTCCEEEEESSSS----------CEEEEECCCSSCCCCEEEECT-TSCEEEEECTTSCEE
T ss_pred             EEEEcCCCCC--CCEEEEEeCCCcEEEEECCCC----------cEEEEEecCCCCceEEEEECC-CCCEEEEEcCCCEEE
Confidence            9999999  7  899999999999999999864          334444 34566899999999 778999999999999


Q ss_pred             EEecCCCCCCCCCCCCCCccceEEEecccCceecccCCC-CCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCcc
Q 004468          174 QHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPP-KQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLT  252 (751)
Q Consensus       174 iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~  252 (751)
                      +||+++++...                        .... .|...|++++|+| ++.+|++++ |+.|++||+++.+.+.
T Consensus       196 iwd~~~~~~~~------------------------~~~~~~h~~~v~~l~fs~-~g~~l~s~~-~~~v~iwd~~~~~~~~  249 (343)
T 3lrv_A          196 VYNLSSPDQAS------------------------SRFPVDEEAKIKEVKFAD-NGYWMVVEC-DQTVVCFDLRKDVGTL  249 (343)
T ss_dssp             EEESSCTTSCC------------------------EECCCCTTSCEEEEEECT-TSSEEEEEE-SSBEEEEETTSSTTCB
T ss_pred             EEECCCCCCCc------------------------cEEeccCCCCEEEEEEeC-CCCEEEEEe-CCeEEEEEcCCCCcce
Confidence            99999876320                        1112 2678999999999 478999999 4599999999876443


Q ss_pred             ccCCCCCCCCccccccccccccCCccccce--EEEEEcCCCCEEEEEeC-CCcEEEEECCCCC
Q 004468          253 SCQKRMSPPPCVNYFCPMHLSEHGRSSLHL--THVTFSPNGEEVLLSYS-GEHVYLMDVNHAG  312 (751)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v--t~v~fspdg~~Ll~~s~-d~~I~lwdl~~~~  312 (751)
                      .+..          +.       .|. ..+  .+++|+|+|++|++++. |+.|+||++....
T Consensus       250 ~~~~----------~~-------~~~-~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~  294 (343)
T 3lrv_A          250 AYPT----------YT-------IPE-FKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKT  294 (343)
T ss_dssp             SSCC----------CB-------C------CCEEEEECTTSSEEEEEETTTTEEEEEEECTTT
T ss_pred             eecc----------cc-------ccc-ccccceEEEECCCCCEEEEecCCCCcEEEEEEcccc
Confidence            2210          00       000 012  46999999999999998 9999999997754

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.90  E-value=8e-23  Score=220.54  Aligned_cols=164  Identities=10%  Similarity=0.094  Sum_probs=103.0

Q ss_pred             EEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEE
Q 004468           76 VWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAV  155 (751)
Q Consensus        76 IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~  155 (751)
                      ||++.+...+..+ .+|...|.+++|+|+  +++|++|+.|+ ++|||+...          .  .....+...+..+++
T Consensus         3 i~s~~~~~~~~~~-~~h~~~V~~v~fs~d--g~~la~g~~~~-~~iw~~~~~----------~--~~~~~~~~~~~~~~~   66 (355)
T 3vu4_A            3 LGSMITRNPIVPE-NHVSNPVTDYEFNQD--QSCLILSTLKS-FEIYNVHPV----------A--HIMSQEMRHLSKVRM   66 (355)
T ss_dssp             -----------------CCCCCEEEECTT--SSEEEEECSSE-EEEEEETTE----------E--EEEEEECSCCCEEEE
T ss_pred             cccccccCCcccc-ccCCCceEEEEECCC--CCEEEEEcCCE-EEEEecCCc----------c--eeeeeecCCeEEEEE
Confidence            5677777777666 789999999999999  89999988765 789998753          1  122223335888899


Q ss_pred             ecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEe
Q 004468          156 EVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGG  235 (751)
Q Consensus       156 sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs  235 (751)
                      .+....++++++.|++|++||+++++..              ..+.            +...|.+++|+++   .++++ 
T Consensus        67 ~~~~~~~~~~~~~d~~v~iWd~~~~~~~--------------~~~~------------~~~~v~~v~~~~~---~~~~~-  116 (355)
T 3vu4_A           67 LHRTNYVAFVTGVKEVVHIWDDVKKQDV--------------SRIK------------VDAPVKDLFLSRE---FIVVS-  116 (355)
T ss_dssp             CTTSSEEEEECSSTTEEEEEETTTTEEE--------------EEEE------------CSSCEEEEEECSS---EEEEE-
T ss_pred             cCCCCEEEEEECCccEEEEEECCCCcEE--------------EEEE------------CCCceEEEEEcCC---EEEEE-
Confidence            8855445567888999999999887521              1100            2347899999883   34443 


Q ss_pred             CCCeEEEEeCCCC-CCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEE--EeCCCcEEEEECCCC
Q 004468          236 SDAFARLYDRRML-PPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLL--SYSGEHVYLMDVNHA  311 (751)
Q Consensus       236 ~D~~IriwD~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~--~s~d~~I~lwdl~~~  311 (751)
                      .|+.|++||+.+. +.+..+.                    .    +...+++++  .++++  |+.+|.|++||+.++
T Consensus       117 ~~~~i~i~d~~~~~~~~~~~~--------------------~----~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~  169 (355)
T 3vu4_A          117 YGDVISVFKFGNPWKRITDDI--------------------R----FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSS  169 (355)
T ss_dssp             ETTEEEEEESSTTCCBSSCCE--------------------E----EEEEEEEET--TEEEEEESSCTTCEEEEECCC-
T ss_pred             EcCEEEEEECCCCceeeEEec--------------------c----CCceEEEEc--cEEEEeCCCcCcEEEEEECCCC
Confidence            4789999999876 3332210                    0    234566777  66666  467999999999883

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.90  E-value=1.6e-22  Score=224.36  Aligned_cols=203  Identities=10%  Similarity=0.135  Sum_probs=155.5

Q ss_pred             cCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCc-----ceEEEEEecCCCCcEEEEEECCCcEEEE
Q 004468           48 GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSA-----NVFCTKFVPETSDELVVSGAGDAEVRLF  122 (751)
Q Consensus        48 gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~-----~V~~v~fsp~s~~~~l~sgs~Dg~V~vw  122 (751)
                      +|.+.|.+++|||+|++||+++.||+|+|||...  ++..+ . |..     .|.+++|+|+  |++|++|+.||+|+||
T Consensus        83 ~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l-~-~~~~~~~~sv~svafSPD--G~~LAsgs~DGtVkIW  156 (588)
T 2j04_A           83 QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNL-D-SKGNLSSRTYHCFEWNPI--ESSIVVGNEDGELQFF  156 (588)
T ss_dssp             SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEEC-C-CSSCSTTTCEEEEEECSS--SSCEEEEETTSEEEEE
T ss_pred             CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeec-c-CCCccccccEEEEEEcCC--CCEEEEEcCCCEEEEE
Confidence            6688999999999999999999999999999644  55566 4 665     5999999999  8999999999999999


Q ss_pred             ECCCCCCCCCCCCCCCCceee----cccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEE
Q 004468          123 NLSRFSGRGLDDNAITPSALY----QCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILL  198 (751)
Q Consensus       123 d~~~~~~~~~~~~~~~~~~~~----~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~  198 (751)
                      |+..+....   ..+-.+.++    .+|...|.+++|+| ++  +++++.|++|++||+.++....        ....+ 
T Consensus       157 d~~~~~l~~---~~~i~l~ti~~~~~gh~~~V~sVawSP-dg--Laass~D~tVrlWd~~~~~~~~--------~~~tL-  221 (588)
T 2j04_A          157 SIRKNSENT---PEFYFESSIRLSDAGSKDWVTHIVWYE-DV--LVAALSNNSVFSMTVSASSHQP--------VSRMI-  221 (588)
T ss_dssp             ECCCCTTTC---CCCEEEEEEECSCTTCCCCEEEEEEET-TE--EEEEETTCCEEEECCCSSSSCC--------CEEEE-
T ss_pred             ECCCCcccc---ccceeeeeeecccccccccEEEEEEcC-Cc--EEEEeCCCeEEEEECCCCcccc--------ceeee-
Confidence            998642100   000024555    67889999999999 55  7899999999999998765210        00000 


Q ss_pred             ecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCcc
Q 004468          199 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRS  278 (751)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  278 (751)
                                  .+.|...|.+++|+   +.+|++++ ++.|++||+...+..              .+      ..||.
T Consensus       222 ------------~~~h~~~V~svaFs---g~~LASa~-~~tIkLWd~~~~~~~--------------~~------~~gh~  265 (588)
T 2j04_A          222 ------------QNASRRKITDLKIV---DYKVVLTC-PGYVHKIDLKNYSIS--------------SL------KTGSL  265 (588)
T ss_dssp             ------------ECCCSSCCCCEEEE---TTEEEEEC-SSEEEEEETTTTEEE--------------EE------ECSCC
T ss_pred             ------------cccccCcEEEEEEE---CCEEEEEe-CCeEEEEECCCCeEE--------------EE------EcCCC
Confidence                        01256789999999   37888887 699999999865421              11      02444


Q ss_pred             ccceEEEEE--cCCCCEEEEEeCCCcEEEEECC
Q 004468          279 SLHLTHVTF--SPNGEEVLLSYSGEHVYLMDVN  309 (751)
Q Consensus       279 ~~~vt~v~f--spdg~~Ll~~s~d~~I~lwdl~  309 (751)
                      . .|+.++|  +||+..|++++.+|+ +||.++
T Consensus       266 ~-~V~~va~~~s~d~~~La~a~edG~-klw~~d  296 (588)
T 2j04_A          266 E-NFHIIPLNHEKESTILLMSNKTSY-KVLLED  296 (588)
T ss_dssp             S-CCCEEEETTCSSCEEEEECSSCEE-EEEESS
T ss_pred             c-eEEEEEeeeCCCCCEEEEEcCCCC-EEEeec
Confidence            4 5999999  999999999999999 999874

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.88  E-value=5.5e-21  Score=217.72  Aligned_cols=205  Identities=12%  Similarity=0.125  Sum_probs=150.7

Q ss_pred             EECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEEC--CCCCCCCCCC
Q 004468           57 SWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNL--SRFSGRGLDD  134 (751)
Q Consensus        57 ~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~--~~~~~~~~~~  134 (751)
                      .|+|++.++++++.|++|.+||..+++++.++..+|.  +.+++|+|+  +++|++++.|++|++||+  .+.       
T Consensus       144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~--~~~v~~spd--g~~l~v~~~d~~V~v~D~~~~t~-------  212 (543)
T 1nir_A          144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA--VHISRMSAS--GRYLLVIGRDARIDMIDLWAKEP-------  212 (543)
T ss_dssp             CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT--EEEEEECTT--SCEEEEEETTSEEEEEETTSSSC-------
T ss_pred             ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc--cceEEECCC--CCEEEEECCCCeEEEEECcCCCC-------
Confidence            3899999999999999999999999999999854555  899999999  899999999999999999  542       


Q ss_pred             CCCCCceeecccCCceeEEEEec----CCCCEEEEEe-CCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceeccc
Q 004468          135 NAITPSALYQCHTRRVKKLAVEV----GNPHVVWSAS-EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLA  209 (751)
Q Consensus       135 ~~~~~~~~~~~h~~~V~~l~~sp----~~~~~l~s~s-~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  209 (751)
                         +.+..+. +...+..++|+|    ++ +++++++ .+++|.+||..+.+..           ..+ ...  .. ...
T Consensus       213 ---~~~~~i~-~g~~p~~va~sp~~~~dg-~~l~v~~~~~~~v~v~D~~t~~~~-----------~~i-~~~--g~-~~~  272 (543)
T 1nir_A          213 ---TKVAEIK-IGIEARSVESSKFKGYED-RYTIAGAYWPPQFAIMDGETLEPK-----------QIV-STR--GM-TVD  272 (543)
T ss_dssp             ---EEEEEEE-CCSEEEEEEECCSTTCTT-TEEEEEEEESSEEEEEETTTCCEE-----------EEE-ECC--EE-CSS
T ss_pred             ---cEEEEEe-cCCCcceEEeCCCcCCCC-CEEEEEEccCCeEEEEeccccccc-----------eee-ccc--Cc-ccC
Confidence               3456665 455689999999    66 5555555 6899999998876532           111 100  00 000


Q ss_pred             CCCCC-ccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEc
Q 004468          210 DPPKQ-TLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFS  288 (751)
Q Consensus       210 ~~~~~-~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fs  288 (751)
                      ....| ...+.++.++|+++.++++...++.|.+||..+.+.+..           ...        .+ ...+..++|+
T Consensus       273 ~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~-----------~~i--------~~-~~~~~~~~~s  332 (543)
T 1nir_A          273 TQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTV-----------TSI--------GA-APFLHDGGWD  332 (543)
T ss_dssp             SCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEE-----------EEE--------EC-CSSCCCEEEC
T ss_pred             ccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCccee-----------EEe--------cc-CcCccCceEC
Confidence            00001 236889999998778888889999999999987543210           000        01 1136789999


Q ss_pred             CCCCEEEEEe-CCCcEEEEECCCCC
Q 004468          289 PNGEEVLLSY-SGEHVYLMDVNHAG  312 (751)
Q Consensus       289 pdg~~Ll~~s-~d~~I~lwdl~~~~  312 (751)
                      |+|++|++++ .+++|.+||+.+++
T Consensus       333 pdg~~l~va~~~~~~v~v~D~~tg~  357 (543)
T 1nir_A          333 SSHRYFMTAANNSNKVAVIDSKDRR  357 (543)
T ss_dssp             TTSCEEEEEEGGGTEEEEEETTTTE
T ss_pred             CCCCEEEEEecCCCeEEEEECCCCe
Confidence            9999887665 58999999999864

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.86  E-value=1.2e-20  Score=208.40  Aligned_cols=245  Identities=12%  Similarity=0.108  Sum_probs=184.4

Q ss_pred             cccccchhhhccccccE-----EeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEe
Q 004468           28 HSLQMHSSLVRRLSQER-----ELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFV  102 (751)
Q Consensus        28 ~~l~~~~~~i~~~~~~~-----~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fs  102 (751)
                      ..+.+|+..  +.+..+     .+.+|.+.|++++|+++|+++++++.|+.|++||+.+++.+..+ ..|...+.+++|+
T Consensus       144 ~~i~~~d~~--~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~-~~~~~~~~~~~~~  220 (433)
T 3bws_A          144 EGMDVLDIN--SGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATV-DLTGKWSKILLYD  220 (433)
T ss_dssp             SSEEEEETT--TCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEE-ECSSSSEEEEEEE
T ss_pred             CeEEEEECC--CCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEE-cCCCCCeeEEEEc
Confidence            445666532  233334     56789999999999999999999999999999999999988888 6899999999999


Q ss_pred             cCCCCcEE-EEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEe--------CCCcEE
Q 004468          103 PETSDELV-VSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSAS--------EDGTLR  173 (751)
Q Consensus       103 p~s~~~~l-~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s--------~Dg~I~  173 (751)
                      |+  +.++ ++++.|+.|++||+..+          +.+..+.. ...+.+++|+| ++..+++++        .||.|+
T Consensus       221 ~~--~~~l~~~~~~~~~i~~~d~~~~----------~~~~~~~~-~~~~~~~~~~~-~g~~l~~~~~~~~~~~~~dg~i~  286 (433)
T 3bws_A          221 PI--RDLVYCSNWISEDISVIDRKTK----------LEIRKTDK-IGLPRGLLLSK-DGKELYIAQFSASNQESGGGRLG  286 (433)
T ss_dssp             TT--TTEEEEEETTTTEEEEEETTTT----------EEEEECCC-CSEEEEEEECT-TSSEEEEEEEESCTTCSCCEEEE
T ss_pred             CC--CCEEEEEecCCCcEEEEECCCC----------cEEEEecC-CCCceEEEEcC-CCCEEEEEECCCCccccCCCeEE
Confidence            99  6666 55568999999999864          33455554 44589999999 556777777        589999


Q ss_pred             EEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccc
Q 004468          174 QHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTS  253 (751)
Q Consensus       174 iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~  253 (751)
                      +||+++++..           .. .              .+...+.+++|+|++..++++++.|+.|++||+.+.+.+..
T Consensus       287 ~~d~~~~~~~-----------~~-~--------------~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~  340 (433)
T 3bws_A          287 IYSMDKEKLI-----------DT-I--------------GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKS  340 (433)
T ss_dssp             EEETTTTEEE-----------EE-E--------------EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             EEECCCCcEE-----------ee-c--------------cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEE
Confidence            9999876421           00 0              12346788999996545777889999999999986543221


Q ss_pred             cCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeC---------------CCcEEEEECCCCCcceeee
Q 004468          254 CQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS---------------GEHVYLMDVNHAGGRAMRY  318 (751)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~---------------d~~I~lwdl~~~~~~~~~~  318 (751)
                      +.                     + ...+.+++|+|+|++|++++.               ||.|++||+.+++.. ..+
T Consensus       341 ~~---------------------~-~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~-~~~  397 (433)
T 3bws_A          341 IP---------------------V-FDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVK-EFW  397 (433)
T ss_dssp             EE---------------------C-SSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEE-EEE
T ss_pred             ec---------------------C-CCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEE-EEe
Confidence            10                     1 124889999999999998877               469999999885433 333


Q ss_pred             ecCCCceeEEeCCCCCCccc
Q 004468          319 TVGDASKIMSFTPTLNGLEL  338 (751)
Q Consensus       319 ~~~~~~~~~~~sp~~~~~~~  338 (751)
                      .....+..++|+|+.+.+..
T Consensus       398 ~~~~~~~~~~~s~dg~~l~~  417 (433)
T 3bws_A          398 EAGNQPTGLDVSPDNRYLVI  417 (433)
T ss_dssp             ECSSSEEEEEECTTSCEEEE
T ss_pred             cCCCCCceEEEcCCCCEEEE
Confidence            44566788999998766543

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.86  E-value=2.4e-20  Score=205.58  Aligned_cols=220  Identities=9%  Similarity=0.035  Sum_probs=160.9

Q ss_pred             cccccccchh--hhccccccEEeccCCCcEEEEEECC--------------CCCEEEEEeCC------CcEEEEeCCCCe
Q 004468           26 VNHSLQMHSS--LVRRLSQERELEGHQGCVNAISWNS--------------KGSLLISGSDD------THINVWSYSSRK   83 (751)
Q Consensus        26 ~~~~l~~~~~--~i~~~~~~~~L~gH~~~V~~l~~s~--------------dg~~LaSgs~D------g~I~IWd~~~~~   83 (751)
                      ++..+++|+.  ...+......|.+|...|..+++++              .+..|+.++.+      +.|++||+.. .
T Consensus        91 ~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g-~  169 (415)
T 2hqs_A           91 YNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDG-Y  169 (415)
T ss_dssp             EEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTS-C
T ss_pred             EEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCC-C
Confidence            4447788876  4444333467899999988888775              26677777654      7999999974 4


Q ss_pred             EEEEecccCCcceEEEEEecCCCCcEEEEEECCC---cEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCC
Q 004468           84 LLHSIETGHSANVFCTKFVPETSDELVVSGAGDA---EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNP  160 (751)
Q Consensus        84 ~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg---~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~  160 (751)
                      .+..+ .+|...|.+++|+|+  |++|++++.|+   .|++||+.++          + ...+..|...+.+++|+|+ +
T Consensus       170 ~~~~l-~~~~~~v~~~~~Spd--g~~la~~s~~~~~~~i~~~d~~tg----------~-~~~l~~~~~~~~~~~~spd-g  234 (415)
T 2hqs_A          170 NQFVV-HRSPQPLMSPAWSPD--GSKLAYVTFESGRSALVIQTLANG----------A-VRQVASFPRHNGAPAFSPD-G  234 (415)
T ss_dssp             SCEEE-EEESSCEEEEEECTT--SSEEEEEECTTSSCEEEEEETTTC----------C-EEEEECCSSCEEEEEECTT-S
T ss_pred             CCEEE-eCCCCcceeeEEcCC--CCEEEEEEecCCCcEEEEEECCCC----------c-EEEeecCCCcccCEEEcCC-C
Confidence            45666 689999999999999  89999999885   9999999864          2 3456678889999999994 5


Q ss_pred             CEEE-EEeCCCc--EEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeC-
Q 004468          161 HVVW-SASEDGT--LRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGS-  236 (751)
Q Consensus       161 ~~l~-s~s~Dg~--I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~-  236 (751)
                      +.|+ +++.|+.  |++||+++++..                          ....+...+.+++|+|+ +++|++++. 
T Consensus       235 ~~la~~~~~~g~~~i~~~d~~~~~~~--------------------------~l~~~~~~~~~~~~spd-g~~l~~~s~~  287 (415)
T 2hqs_A          235 SKLAFALSKTGSLNLYVMDLASGQIR--------------------------QVTDGRSNNTEPTWFPD-SQNLAFTSDQ  287 (415)
T ss_dssp             SEEEEEECTTSSCEEEEEETTTCCEE--------------------------ECCCCSSCEEEEEECTT-SSEEEEEECT
T ss_pred             CEEEEEEecCCCceEEEEECCCCCEE--------------------------eCcCCCCcccceEECCC-CCEEEEEECC
Confidence            5554 7777765  999999876411                          11124457889999995 777877776 


Q ss_pred             CC--eEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCC---CcEEEEECCC
Q 004468          237 DA--FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG---EHVYLMDVNH  310 (751)
Q Consensus       237 D~--~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d---~~I~lwdl~~  310 (751)
                      ++  .|++||+.+.+...              +       ..+ ...+.+++|+|||++|++++.+   ..|++||+.+
T Consensus       288 ~g~~~i~~~d~~~~~~~~--------------l-------~~~-~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~  344 (415)
T 2hqs_A          288 AGRPQVYKVNINGGAPQR--------------I-------TWE-GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLAT  344 (415)
T ss_dssp             TSSCEEEEEETTSSCCEE--------------C-------CCS-SSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTT
T ss_pred             CCCcEEEEEECCCCCEEE--------------E-------ecC-CCcccCeEECCCCCEEEEEECcCCceEEEEEECCC
Confidence            44  67778887654211              0       001 1148899999999999988764   5899999877

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.85  E-value=2.6e-19  Score=197.26  Aligned_cols=237  Identities=11%  Similarity=0.089  Sum_probs=179.3

Q ss_pred             cccccchhhhccccccEEeccCCCcEEEEEECCCCCEEEEEeCCC---cEEEEeCCCCeEEEEecccCCcceEEEEEecC
Q 004468           28 HSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDT---HINVWSYSSRKLLHSIETGHSANVFCTKFVPE  104 (751)
Q Consensus        28 ~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg---~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~  104 (751)
                      ..+.+|+..   ....+.|.+|.+.|.+++|+|+|++||+++.|+   .|++||+.+++.. .+ ..|.+.+.+++|+|+
T Consensus       159 ~~i~i~d~~---g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l-~~~~~~~~~~~~spd  233 (415)
T 2hqs_A          159 YELRVSDYD---GYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QV-ASFPRHNGAPAFSPD  233 (415)
T ss_dssp             EEEEEEETT---SCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EE-ECCSSCEEEEEECTT
T ss_pred             ceEEEEcCC---CCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-Ee-ecCCCcccCEEEcCC
Confidence            567777653   345688899999999999999999999999885   9999999988775 34 578889999999999


Q ss_pred             CCCcEEE-EEECCCc--EEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeC-CC--cEEEEecC
Q 004468          105 TSDELVV-SGAGDAE--VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASE-DG--TLRQHDFR  178 (751)
Q Consensus       105 s~~~~l~-sgs~Dg~--V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~-Dg--~I~iwDlr  178 (751)
                        |++|+ +++.|+.  |++||+.++           ....+..|...+.+++|+| +++.|++++. ++  .|.+||+.
T Consensus       234 --g~~la~~~~~~g~~~i~~~d~~~~-----------~~~~l~~~~~~~~~~~~sp-dg~~l~~~s~~~g~~~i~~~d~~  299 (415)
T 2hqs_A          234 --GSKLAFALSKTGSLNLYVMDLASG-----------QIRQVTDGRSNNTEPTWFP-DSQNLAFTSDQAGRPQVYKVNIN  299 (415)
T ss_dssp             --SSEEEEEECTTSSCEEEEEETTTC-----------CEEECCCCSSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETT
T ss_pred             --CCEEEEEEecCCCceEEEEECCCC-----------CEEeCcCCCCcccceEECC-CCCEEEEEECCCCCcEEEEEECC
Confidence              78777 7776665  999999863           2456777889999999999 5676766665 55  57777877


Q ss_pred             CCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCC---CeEEEEeCCCCCCccccC
Q 004468          179 QGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD---AFARLYDRRMLPPLTSCQ  255 (751)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D---~~IriwD~~~~~~~~~~~  255 (751)
                      +++..                       .+   ..+...+.+++|+|+ +++|++++.+   ..|++||+.+.+...   
T Consensus       300 ~~~~~-----------------------~l---~~~~~~~~~~~~spd-G~~l~~~~~~~g~~~i~~~d~~~~~~~~---  349 (415)
T 2hqs_A          300 GGAPQ-----------------------RI---TWEGSQNQDADVSSD-GKFMVMVSSNGGQQHIAKQDLATGGVQV---  349 (415)
T ss_dssp             SSCCE-----------------------EC---CCSSSEEEEEEECTT-SSEEEEEEECSSCEEEEEEETTTCCEEE---
T ss_pred             CCCEE-----------------------EE---ecCCCcccCeEECCC-CCEEEEEECcCCceEEEEEECCCCCEEE---
Confidence            65411                       00   112346788999995 7888877764   689999998754211   


Q ss_pred             CCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCC---cEEEEECCCCCcceeeeecCCCceeEEeCCC
Q 004468          256 KRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGE---HVYLMDVNHAGGRAMRYTVGDASKIMSFTPT  332 (751)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~---~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp~  332 (751)
                                 +       ..+.  .+.+++|+|||++|++++.++   .|++||+.. +.......+...+..++|+|.
T Consensus       350 -----------l-------~~~~--~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g-~~~~~l~~~~~~v~~~~~~~~  408 (415)
T 2hqs_A          350 -----------L-------SSTF--LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDG-RFKARLPATDGQVKFPAWSPY  408 (415)
T ss_dssp             -----------C-------CCSS--SCEEEEECTTSSEEEEEEEETTEEEEEEEETTS-CCEEECCCSSSEEEEEEECCC
T ss_pred             -----------e-------cCCC--CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCC-CcEEEeeCCCCCCcCCccccc
Confidence                       0       1111  488999999999999988876   899999986 444455556677888999997


Q ss_pred             CC
Q 004468          333 LN  334 (751)
Q Consensus       333 ~~  334 (751)
                      ..
T Consensus       409 ~~  410 (415)
T 2hqs_A          409 LH  410 (415)
T ss_dssp             CC
T ss_pred             cc
Confidence            54

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.84  E-value=4.3e-19  Score=210.34  Aligned_cols=222  Identities=9%  Similarity=0.017  Sum_probs=151.7

Q ss_pred             CCcEEEEEECCCCCEEEEEeC-CC-----cEEEEeCCCCeEEEEecccCC------------------------cceEEE
Q 004468           50 QGCVNAISWNSKGSLLISGSD-DT-----HINVWSYSSRKLLHSIETGHS------------------------ANVFCT   99 (751)
Q Consensus        50 ~~~V~~l~~s~dg~~LaSgs~-Dg-----~I~IWd~~~~~~~~~l~~~h~------------------------~~V~~v   99 (751)
                      ...|++++|||||++||+++. |+     .|.+||+.+++....+ ..+.                        ..|.++
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  114 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLV-DSKVVLPGTETLSDEEKARRERQRIAAMTGIVDY  114 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEE-CGGGTC--------------------CCEESCCC
T ss_pred             CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEcc-chhhcccccccccchhhhhhhhhhhccccCccee
Confidence            457999999999999999998 88     8999999998876665 3433                        338999


Q ss_pred             EEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCC
Q 004468          100 KFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQ  179 (751)
Q Consensus       100 ~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~  179 (751)
                      +|+|+  |++|++++. +.|++||+..+..        .....+..|...+..++|+| +++.|+.++ ++.|++||+.+
T Consensus       115 ~~SpD--g~~l~~~~~-~~i~~~d~~~~~~--------~~~~~l~~~~~~~~~~~~SP-DG~~la~~~-~~~i~~~d~~~  181 (741)
T 2ecf_A          115 QWSPD--AQRLLFPLG-GELYLYDLKQEGK--------AAVRQLTHGEGFATDAKLSP-KGGFVSFIR-GRNLWVIDLAS  181 (741)
T ss_dssp             EECTT--SSEEEEEET-TEEEEEESSSCST--------TSCCBCCCSSSCEEEEEECT-TSSEEEEEE-TTEEEEEETTT
T ss_pred             EECCC--CCEEEEEeC-CcEEEEECCCCCc--------ceEEEcccCCcccccccCCC-CCCEEEEEe-CCcEEEEecCC
Confidence            99999  899999886 9999999986410        02445667888899999999 668887777 46999999987


Q ss_pred             CCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCC---------------------
Q 004468          180 GSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDA---------------------  238 (751)
Q Consensus       180 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~---------------------  238 (751)
                      ++..........   .+....    ...+.  ......+.+++|+|+ +++|++++.|+                     
T Consensus       182 g~~~~~~~~~~~---~~~~g~----~~~v~--~~~~~~~~~~~~SpD-g~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~  251 (741)
T 2ecf_A          182 GRQMQLTADGST---TIGNGI----AEFVA--DEEMDRHTGYWWAPD-DSAIAYARIDESPVPVQKRYEVYADRTDVIEQ  251 (741)
T ss_dssp             TEEEECCCCCCS---SEEESC----CCHHH--HHHSCCCCSEEECTT-SSCEEEEEEECTTSCEEEEEEECSSCEEEEEE
T ss_pred             CCEEEeccCCcc---ceeccc----cceee--eeccccccceEECCC-CCEEEEEEEcCCCCceEecCCCCCCcccceEe
Confidence            652211000000   000000    00000  000112577999995 78888887665                     


Q ss_pred             ------------eEEEEeCCC-CCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeC-----C
Q 004468          239 ------------FARLYDRRM-LPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-----G  300 (751)
Q Consensus       239 ------------~IriwD~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~-----d  300 (751)
                                  .|++||+.+ .+.....             ..     ..+.. .+..++| |||++|++++.     +
T Consensus       252 ~~~~~g~~~~~~~l~~~d~~~~~~~~~~~-------------~~-----~~~~~-~~~~~~~-pDg~~l~~~~~~~~~~~  311 (741)
T 2ecf_A          252 RYPAAGDANVQVKLGVISPAEQAQTQWID-------------LG-----KEQDI-YLARVNW-RDPQHLSFQRQSRDQKK  311 (741)
T ss_dssp             ECCBTTSCCCEEEEEEECSSTTCCCEEEC-------------CC-----SCSSE-EEEEEEE-EETTEEEEEEEETTSSE
T ss_pred             ecCCCCCCCCeeEEEEEECCCCCceEEec-------------CC-----CCcce-EEEEEEe-CCCCEEEEEEecccCCe
Confidence                        788888876 5422110             00     01222 5899999 99999997764     5


Q ss_pred             CcEEEEECCCCCcce
Q 004468          301 EHVYLMDVNHAGGRA  315 (751)
Q Consensus       301 ~~I~lwdl~~~~~~~  315 (751)
                      ..|++||+.++....
T Consensus       312 ~~i~~~d~~~g~~~~  326 (741)
T 2ecf_A          312 LDLVEVTLASNQQRV  326 (741)
T ss_dssp             EEEEEEETTTCCEEE
T ss_pred             EEEEEEECCCCceEE
Confidence            689999999865433

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.83  E-value=5.7e-19  Score=217.44  Aligned_cols=263  Identities=10%  Similarity=-0.002  Sum_probs=168.6

Q ss_pred             ccEEeccCCCcEEEEEECCCCCEEEEEeCC------CcEEEEeCCCCeEEEEecccCCcce-------EEEEEecCCCCc
Q 004468           42 QERELEGHQGCVNAISWNSKGSLLISGSDD------THINVWSYSSRKLLHSIETGHSANV-------FCTKFVPETSDE  108 (751)
Q Consensus        42 ~~~~L~gH~~~V~~l~~s~dg~~LaSgs~D------g~I~IWd~~~~~~~~~l~~~h~~~V-------~~v~fsp~s~~~  108 (751)
                      ..+.|.+|.+.|.+++|||||++||+++.+      ..|.+|++.+++ ...+ ..|...+       .+++|+|+  |+
T Consensus        44 ~~~~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~-~~~l-t~~~~~~~~~~~~~~~~~~SpD--g~  119 (1045)
T 1k32_A           44 STRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE-IKRI-TYFSGKSTGRRMFTDVAGFDPD--GN  119 (1045)
T ss_dssp             CEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE-EEEC-CCCCEEEETTEECSEEEEECTT--CC
T ss_pred             cEEEeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCC-eEEc-ccCCCcccccccccccccCCCC--CE
Confidence            456788999999999999999999988654      479999998876 4556 7898888       99999999  67


Q ss_pred             EEEEEECC------CcEEEEECCCCCCCCCCCCC---------------------------------------CCCceee
Q 004468          109 LVVSGAGD------AEVRLFNLSRFSGRGLDDNA---------------------------------------ITPSALY  143 (751)
Q Consensus       109 ~l~sgs~D------g~V~vwd~~~~~~~~~~~~~---------------------------------------~~~~~~~  143 (751)
                      ++++++.+      ..|.+|++..+....+....                                       ......+
T Consensus       120 ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l  199 (1045)
T 1k32_A          120 LIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKI  199 (1045)
T ss_dssp             EEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEE
T ss_pred             EEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEEC
Confidence            77888755      35777777543211110000                                       0112334


Q ss_pred             cccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCc---------cc---------eEEEecccCce
Q 004468          144 QCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQE---------CR---------NILLDLRCGAK  205 (751)
Q Consensus       144 ~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~---------~~---------~~l~~~~~~~~  205 (751)
                      .+|...+.++.|++ + .++++++.||++.+|.+............+..         ..         ..+++......
T Consensus       200 ~~~~~~v~~~~~s~-d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~~~~~SpDG~~la~~~~~~i~~~d~~~~~l  277 (1045)
T 1k32_A          200 VDMSTHVSSPVIVG-H-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFTDYYPRHLNTDGRRILFSKGGSIYIFNPDTEKI  277 (1045)
T ss_dssp             ECCSSCCEEEEEET-T-EEEEEECTTSSCEEEEEETTSCSCEECCCCCSSCEEEEEESSSCEEEEETTEEEEECTTTCCE
T ss_pred             cCCCCcccceEEeC-C-EEEEEEeccCceEEEEEeCCCCcceEecCCCCcceeeEcCCCCEEEEEeCCEEEEecCCceEe
Confidence            67889999999998 4 67778889999999987642211110011111         01         11222211111


Q ss_pred             ecccCCC--------CCccceEEEEEe-CCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCC
Q 004468          206 RSLADPP--------KQTLSLKSCDIS-STRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHG  276 (751)
Q Consensus       206 ~~~~~~~--------~~~~~v~~i~~s-p~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  276 (751)
                      ..+....        .+...+.+++|+ |+ +++|++++ ++.|++|+........              +       ..
T Consensus       278 ~~l~~~~~~~~~~~~~~~~~v~~~~~S~pd-G~~la~~~-~~~i~~~~~~~~~~~~--------------~-------~~  334 (1045)
T 1k32_A          278 EKIEIGDLESPEDRIISIPSKFAEDFSPLD-GDLIAFVS-RGQAFIQDVSGTYVLK--------------V-------PE  334 (1045)
T ss_dssp             EECCCCCCCBCCSEEEECGGGGEEEEEECG-GGCEEEEE-TTEEEEECTTSSBEEE--------------C-------SC
T ss_pred             eeeccCcccccccccccccccceeeecCCC-CCEEEEEE-cCEEEEEcCCCCceEE--------------c-------cC
Confidence            1110000        022368899999 95 77788777 8899999987543111              0       11


Q ss_pred             ccccceEEEEEcCCCCEEEEEeCCCcEE-EEECCCCCcceeeeecCCCceeEEeCCCCCC
Q 004468          277 RSSLHLTHVTFSPNGEEVLLSYSGEHVY-LMDVNHAGGRAMRYTVGDASKIMSFTPTLNG  335 (751)
Q Consensus       277 ~~~~~vt~v~fspdg~~Ll~~s~d~~I~-lwdl~~~~~~~~~~~~~~~~~~~~~sp~~~~  335 (751)
                      +....+..++|+ ||+.|+.++.+..|+ +||+.++...... .+...+..++|+|+...
T Consensus       335 ~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l~-~~~~~~~~~~~SpDG~~  392 (1045)
T 1k32_A          335 PLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEKFE-ENLGNVFAMGVDRNGKF  392 (1045)
T ss_dssp             CSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEECC-CCCCSEEEEEECTTSSE
T ss_pred             CCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceEec-CCccceeeeEECCCCCE
Confidence            222248899999 999999999888999 9999875433222 33445566777776543

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.82  E-value=1e-18  Score=180.93  Aligned_cols=255  Identities=12%  Similarity=0.091  Sum_probs=175.3

Q ss_pred             cCcccccccccchhhhccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCC-CeEEEEecccC-CcceEEE
Q 004468           22 TRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSS-RKLLHSIETGH-SANVFCT   99 (751)
Q Consensus        22 ~~~~~~~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~-~~~~~~l~~~h-~~~V~~v   99 (751)
                      .+...+..+.+|+....+   ...+..|.+.|.+++|+|+|++|++++ ++.|.+||+.+ ++....+ .+| ...|.++
T Consensus        16 ~~~~~~~~i~~~d~~~~~---~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~-~~~~~~~~~~~   90 (297)
T 2ojh_A           16 PGGSMRSSIEIFNIRTRK---MRVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVD-TGFATICNNDH   90 (297)
T ss_dssp             --CCCCEEEEEEETTTTE---EEEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECC-CTTCCCBCSCC
T ss_pred             CCCCcceeEEEEeCCCCc---eeeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEec-cccccccccce
Confidence            345667788887754332   335667999999999999999999987 78999999998 7766555 455 4789999


Q ss_pred             EEecCCCCcEEEEEE--CCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEec
Q 004468          100 KFVPETSDELVVSGA--GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDF  177 (751)
Q Consensus       100 ~fsp~s~~~~l~sgs--~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDl  177 (751)
                      +|+|+  +++|++++  .++.++||.+....+         ....+..+. .+..++|+|++..++++++.|+.+++|++
T Consensus        91 ~~spd--g~~l~~~~~~~~~~~~l~~~~~~~~---------~~~~~~~~~-~~~~~~~spdg~~l~~~~~~~~~~~l~~~  158 (297)
T 2ojh_A           91 GISPD--GALYAISDKVEFGKSAIYLLPSTGG---------TPRLMTKNL-PSYWHGWSPDGKSFTYCGIRDQVFDIYSM  158 (297)
T ss_dssp             EECTT--SSEEEEEECTTTSSCEEEEEETTCC---------CCEECCSSS-SEEEEEECTTSSEEEEEEEETTEEEEEEE
T ss_pred             EECCC--CCEEEEEEeCCCCcceEEEEECCCC---------ceEEeecCC-CccceEECCCCCEEEEEECCCCceEEEEE
Confidence            99999  89999988  445666766643221         133343333 48899999955445558889999999997


Q ss_pred             CCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEe-CCCeEEEEeCCC-CCCccccC
Q 004468          178 RQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGG-SDAFARLYDRRM-LPPLTSCQ  255 (751)
Q Consensus       178 r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs-~D~~IriwD~~~-~~~~~~~~  255 (751)
                      +.....                        ......+...+.+++|+|+ +.+|++++ .++.++||++.. ....    
T Consensus       159 ~~~~~~------------------------~~~~~~~~~~~~~~~~s~d-g~~l~~~~~~~~~~~i~~~~~~~~~~----  209 (297)
T 2ojh_A          159 DIDSGV------------------------ETRLTHGEGRNDGPDYSPD-GRWIYFNSSRTGQMQIWRVRVDGSSV----  209 (297)
T ss_dssp             ETTTCC------------------------EEECCCSSSCEEEEEECTT-SSEEEEEECTTSSCEEEEEETTSSCE----
T ss_pred             ECCCCc------------------------ceEcccCCCccccceECCC-CCEEEEEecCCCCccEEEECCCCCCc----
Confidence            543210                        0011123457899999995 66666555 689999998863 2111    


Q ss_pred             CCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCC-----------CcEEEEECCCCCcceeee--ecCC
Q 004468          256 KRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG-----------EHVYLMDVNHAGGRAMRY--TVGD  322 (751)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d-----------~~I~lwdl~~~~~~~~~~--~~~~  322 (751)
                               ..+       ..+. ..+..++|+|+|++|++++.+           ..|++||+.++.......  .+..
T Consensus       210 ---------~~~-------~~~~-~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~  272 (297)
T 2ojh_A          210 ---------ERI-------TDSA-YGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQG  272 (297)
T ss_dssp             ---------EEC-------CCCS-EEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTT
T ss_pred             ---------EEE-------ecCC-cccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCc
Confidence                     111       1121 248899999999999988875           569999999865443332  4455


Q ss_pred             CceeEEeCCCCCCcccC
Q 004468          323 ASKIMSFTPTLNGLELQ  339 (751)
Q Consensus       323 ~~~~~~~sp~~~~~~~~  339 (751)
                      .+..++|+|+...+.+.
T Consensus       273 ~~~~~~~spdg~~l~~~  289 (297)
T 2ojh_A          273 TMNSPNWSPDGDEFAYV  289 (297)
T ss_dssp             TSCSCCBCTTSSEEEEE
T ss_pred             ccccceECCCCCEEEEE
Confidence            67778888887665443

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.81  E-value=6.1e-18  Score=192.61  Aligned_cols=248  Identities=11%  Similarity=0.119  Sum_probs=171.6

Q ss_pred             cccccchhhhccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeC--CCCeEEEEecccCCcceEEEEEec--
Q 004468           28 HSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSY--SSRKLLHSIETGHSANVFCTKFVP--  103 (751)
Q Consensus        28 ~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~--~~~~~~~~l~~~h~~~V~~v~fsp--  103 (751)
                      ..+.+++  ..+.+++.++..+.. +..++|+|+|++|++++.|++|.+||+  .+++.+..+ . +...+..++|+|  
T Consensus       159 ~~V~v~D--~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i-~-~g~~p~~va~sp~~  233 (543)
T 1nir_A          159 GQIALVD--GDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEI-K-IGIEARSVESSKFK  233 (543)
T ss_dssp             TEEEEEE--TTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEE-E-CCSEEEEEEECCST
T ss_pred             CeEEEEE--CCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEE-e-cCCCcceEEeCCCc
Confidence            4555554  345667788884333 999999999999999999999999999  888888888 3 456789999999  


Q ss_pred             --CCCCcEEEEEE-CCCcEEEEECCCCCCCCCCCCCCCCceeecc----------cC-CceeEEEEecCCCCEEEEEeCC
Q 004468          104 --ETSDELVVSGA-GDAEVRLFNLSRFSGRGLDDNAITPSALYQC----------HT-RRVKKLAVEVGNPHVVWSASED  169 (751)
Q Consensus       104 --~s~~~~l~sgs-~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~----------h~-~~V~~l~~sp~~~~~l~s~s~D  169 (751)
                        +  |++|++++ .+++|.|||..+.          +++..+..          |. ..|..+.++|+++.++++...+
T Consensus       234 ~~d--g~~l~v~~~~~~~v~v~D~~t~----------~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~  301 (543)
T 1nir_A          234 GYE--DRYTIAGAYWPPQFAIMDGETL----------EPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKET  301 (543)
T ss_dssp             TCT--TTEEEEEEEESSEEEEEETTTC----------CEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTT
T ss_pred             CCC--CCEEEEEEccCCeEEEEecccc----------ccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCC
Confidence              8  78888877 5899999998864          44555443          33 3789999999888889999999


Q ss_pred             CcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEE-EeCCCeEEEEeCCCC
Q 004468          170 GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLV-GGSDAFARLYDRRML  248 (751)
Q Consensus       170 g~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~s-gs~D~~IriwD~~~~  248 (751)
                      ++|.+||+.+.+.+.          ...+.              +...+.++.|+|+ ++++++ +..+++|.+||..++
T Consensus       302 g~i~vvd~~~~~~l~----------~~~i~--------------~~~~~~~~~~spd-g~~l~va~~~~~~v~v~D~~tg  356 (543)
T 1nir_A          302 GKVLLVNYKDIDNLT----------VTSIG--------------AAPFLHDGGWDSS-HRYFMTAANNSNKVAVIDSKDR  356 (543)
T ss_dssp             TEEEEEECTTSSSCE----------EEEEE--------------CCSSCCCEEECTT-SCEEEEEEGGGTEEEEEETTTT
T ss_pred             CeEEEEEecCCCcce----------eEEec--------------cCcCccCceECCC-CCEEEEEecCCCeEEEEECCCC
Confidence            999999998765320          00010              1234667899995 666554 456899999999987


Q ss_pred             CCccccCCCCCCCCccccccccccccCCccccceEEEEEcCC-CCEEEEEe-CCCcEEEEECCC-------CCcceeeee
Q 004468          249 PPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPN-GEEVLLSY-SGEHVYLMDVNH-------AGGRAMRYT  319 (751)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspd-g~~Ll~~s-~d~~I~lwdl~~-------~~~~~~~~~  319 (751)
                      +.+..+...                ...|... ...+ ++|+ |..++++. .|++|.|||+.+       .+.......
T Consensus       357 ~l~~~i~~g----------------~~ph~g~-g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~  418 (543)
T 1nir_A          357 RLSALVDVG----------------KTPHPGR-GANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQG  418 (543)
T ss_dssp             EEEEEEECS----------------SSBCCTT-CEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEEC
T ss_pred             eEEEeeccC----------------CCCCCCC-Cccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEc
Confidence            644332110                0112221 2223 5787 55555554 589999999988       333333333


Q ss_pred             cCCCceeEEeCCCCCC
Q 004468          320 VGDASKIMSFTPTLNG  335 (751)
Q Consensus       320 ~~~~~~~~~~sp~~~~  335 (751)
                      ++.....++++|+.+.
T Consensus       419 ~g~~~~~v~~~pdg~~  434 (543)
T 1nir_A          419 QGGGSLFIKTHPKSSH  434 (543)
T ss_dssp             SCSCCCCEECCTTCCE
T ss_pred             CCCCceEEEcCCCCCc
Confidence            4444555667776543

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.80  E-value=6.1e-18  Score=208.22  Aligned_cols=255  Identities=10%  Similarity=0.053  Sum_probs=176.5

Q ss_pred             cccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCC-CeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcE
Q 004468           41 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSS-RKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEV  119 (751)
Q Consensus        41 ~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~-~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V  119 (751)
                      .....|.+|.+.|.++.|+++ .++++++.|+++.||.+.. +.....+ ..|. .+..++|+|+  |+.|+.+ .++.|
T Consensus       194 ~~~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l-~~~~-~~~~~~~SpD--G~~la~~-~~~~i  267 (1045)
T 1k32_A          194 GAFKKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKH-TSFT-DYYPRHLNTD--GRRILFS-KGGSI  267 (1045)
T ss_dssp             TEEEEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEEC-CCCC-SSCEEEEEES--SSCEEEE-ETTEE
T ss_pred             CCeEECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEe-cCCC-CcceeeEcCC--CCEEEEE-eCCEE
Confidence            344566899999999999988 7777888899999998653 4344455 4555 4677899999  7888887 48999


Q ss_pred             EEEECCCCCCCCCCCCCCCCceeecc-----------cCCceeEEEEe-cCCCCEEEEEeCCCcEEEEecCCCCCCCCCC
Q 004468          120 RLFNLSRFSGRGLDDNAITPSALYQC-----------HTRRVKKLAVE-VGNPHVVWSASEDGTLRQHDFRQGSSCPPAG  187 (751)
Q Consensus       120 ~vwd~~~~~~~~~~~~~~~~~~~~~~-----------h~~~V~~l~~s-p~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~  187 (751)
                      ++||+...           .+..+..           |...|.+++|+ | ++..|++++ ++.|.+|++..+.......
T Consensus       268 ~~~d~~~~-----------~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~p-dG~~la~~~-~~~i~~~~~~~~~~~~~~~  334 (1045)
T 1k32_A          268 YIFNPDTE-----------KIEKIEIGDLESPEDRIISIPSKFAEDFSPL-DGDLIAFVS-RGQAFIQDVSGTYVLKVPE  334 (1045)
T ss_dssp             EEECTTTC-----------CEEECCCCCCCBCCSEEEECGGGGEEEEEEC-GGGCEEEEE-TTEEEEECTTSSBEEECSC
T ss_pred             EEecCCce-----------EeeeeccCcccccccccccccccceeeecCC-CCCEEEEEE-cCEEEEEcCCCCceEEccC
Confidence            99998421           1223322           55679999999 9 567676766 7899999988765321110


Q ss_pred             CCC--------Cc----------cceE-EEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCC
Q 004468          188 SSH--------QE----------CRNI-LLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRML  248 (751)
Q Consensus       188 ~~~--------~~----------~~~~-l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~  248 (751)
                      ...        .+          .... +++...+....+.   .+...+..++|+| ++++|++++.++.|++||+.++
T Consensus       335 ~~~~~~~~~~~sdg~~l~~~s~~~~l~~~~d~~~~~~~~l~---~~~~~~~~~~~Sp-DG~~la~~~~~~~v~~~d~~tg  410 (1045)
T 1k32_A          335 PLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFE---ENLGNVFAMGVDR-NGKFAVVANDRFEIMTVDLETG  410 (1045)
T ss_dssp             CSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEECC---CCCCSEEEEEECT-TSSEEEEEETTSEEEEEETTTC
T ss_pred             CCcceEEeeeEcCCCeEEEEECCCceEEEEECCCCCceEec---CCccceeeeEECC-CCCEEEEECCCCeEEEEECCCC
Confidence            000        00          0112 3454444333332   4567889999999 5899999999999999999876


Q ss_pred             CCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCC----------cEEEEECCCCCcceeee
Q 004468          249 PPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGE----------HVYLMDVNHAGGRAMRY  318 (751)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~----------~I~lwdl~~~~~~~~~~  318 (751)
                      +.....                    .+|.. .+.+++|||||++|++++.++          .|++||+.++. .....
T Consensus       411 ~~~~~~--------------------~~~~~-~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~  468 (1045)
T 1k32_A          411 KPTVIE--------------------RSREA-MITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAAT  468 (1045)
T ss_dssp             CEEEEE--------------------ECSSS-CCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECS
T ss_pred             ceEEec--------------------cCCCC-CccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEee
Confidence            532111                    11222 478899999999999887654          99999999854 33334


Q ss_pred             ecCCCceeEEeCCCCCCcccCC
Q 004468          319 TVGDASKIMSFTPTLNGLELQP  340 (751)
Q Consensus       319 ~~~~~~~~~~~sp~~~~~~~~~  340 (751)
                      .+......++|+|+...+.+..
T Consensus       469 ~~~~~~~~~~~spdG~~l~~~s  490 (1045)
T 1k32_A          469 TENSHDYAPAFDADSKNLYYLS  490 (1045)
T ss_dssp             CSSSBEEEEEECTTSCEEEEEE
T ss_pred             CCCcccCCceEcCCCCEEEEEe
Confidence            4455566788999888776543

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.80  E-value=6.7e-18  Score=179.34  Aligned_cols=196  Identities=14%  Similarity=0.172  Sum_probs=128.2

Q ss_pred             EEEEEeCCCcEEEEeCC-CC--eEEEEecccCCcceEEEEEecCCCCcEEEEEECC-CcEEEEECCCCCCCCCCCCCCCC
Q 004468           64 LLISGSDDTHINVWSYS-SR--KLLHSIETGHSANVFCTKFVPETSDELVVSGAGD-AEVRLFNLSRFSGRGLDDNAITP  139 (751)
Q Consensus        64 ~LaSgs~Dg~I~IWd~~-~~--~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~D-g~V~vwd~~~~~~~~~~~~~~~~  139 (751)
                      ++++++.|+.|.+|++. ++  +.+..+  .|...+.+++|+|+  +++|++++.+ +.|++|++....+..      ..
T Consensus         7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~--~~~~~~~~~~~spd--g~~l~~~~~~~~~v~~~~~~~~~~~~------~~   76 (343)
T 1ri6_A            7 VYIASPESQQIHVWNLNHEGALTLTQVV--DVPGQVQPMVVSPD--KRYLYVGVRPEFRVLAYRIAPDDGAL------TF   76 (343)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEE--ECSSCCCCEEECTT--SSEEEEEETTTTEEEEEEECTTTCCE------EE
T ss_pred             EEEeCCCCCeEEEEEECCCCcEEEeeeE--ecCCCCceEEECCC--CCEEEEeecCCCeEEEEEecCCCCce------ee
Confidence            45555889999999985 34  233333  57788999999999  7888888876 999999997322211      22


Q ss_pred             ceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceE
Q 004468          140 SALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLK  219 (751)
Q Consensus       140 ~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~  219 (751)
                      +..+..+. .+..++|+|++..+++++..++.|.+||+..+...           ..+...           . ....+.
T Consensus        77 ~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~-----------~~~~~~-----------~-~~~~~~  132 (343)
T 1ri6_A           77 AAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPV-----------GVVDVV-----------E-GLDGCH  132 (343)
T ss_dssp             EEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEE-----------EEEEEE-----------C-CCTTBC
T ss_pred             ccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccc-----------cccccc-----------c-CCCCce
Confidence            34444444 78999999944334445556899999999522100           011000           0 123477


Q ss_pred             EEEEeCCCCcEEEEEe-CCCeEEEEeCCC-CCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEE
Q 004468          220 SCDISSTRPHLLLVGG-SDAFARLYDRRM-LPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLS  297 (751)
Q Consensus       220 ~i~~sp~~~~~l~sgs-~D~~IriwD~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~  297 (751)
                      +++|+|+ ++++++++ .++.|++||+.. .+.. ..          .   ....  ..+....+..++|+|+|++|+++
T Consensus       133 ~~~~s~d-g~~l~~~~~~~~~v~~~d~~~~~~~~-~~----------~---~~~~--~~~~~~~~~~~~~~pdg~~l~~~  195 (343)
T 1ri6_A          133 SANISPD-NRTLWVPALKQDRICLFTVSDDGHLV-AQ----------D---PAEV--TTVEGAGPRHMVFHPNEQYAYCV  195 (343)
T ss_dssp             CCEECTT-SSEEEEEEGGGTEEEEEEECTTSCEE-EE----------E---EEEE--ECSTTCCEEEEEECTTSSEEEEE
T ss_pred             EEEECCC-CCEEEEecCCCCEEEEEEecCCCcee-ee----------c---cccc--ccCCCCCcceEEECCCCCEEEEE
Confidence            8899995 66667666 899999999976 3211 00          0   0000  00111247889999999988766


Q ss_pred             e-CCCcEEEEECCC
Q 004468          298 Y-SGEHVYLMDVNH  310 (751)
Q Consensus       298 s-~d~~I~lwdl~~  310 (751)
                      + .++.|++||+..
T Consensus       196 ~~~~~~i~~~~~~~  209 (343)
T 1ri6_A          196 NELNSSVDVWELKD  209 (343)
T ss_dssp             ETTTTEEEEEESSC
T ss_pred             eCCCCEEEEEEecC
Confidence            5 789999999865

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.79  E-value=3.6e-18  Score=201.76  Aligned_cols=248  Identities=8%  Similarity=-0.011  Sum_probs=156.0

Q ss_pred             cEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCc---ceEEEEEecCCCCcEEEEEECC---------CcE
Q 004468           52 CVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSA---NVFCTKFVPETSDELVVSGAGD---------AEV  119 (751)
Q Consensus        52 ~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~---~V~~v~fsp~s~~~~l~sgs~D---------g~V  119 (751)
                      .+.+++|+|||+++++ +.||+|++||+.+++....+ .+|..   .|.+++|+|+  |++|++++.+         +.|
T Consensus        18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~-~~~~~~~~~v~~~~~SpD--g~~l~~~~~~~~~~~~~~~~~i   93 (723)
T 1xfd_A           18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLI-EGKKIESLRAIRYEISPD--REYALFSYNVEPIYQHSYTGYY   93 (723)
T ss_dssp             CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEE-CTTTTTTTTCSEEEECTT--SSEEEEEESCCCCSSSCCCSEE
T ss_pred             cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEe-ccccccccccceEEECCC--CCEEEEEecCccceeecceeeE
Confidence            4678899999998877 78999999999998877666 56664   4999999999  8999999875         778


Q ss_pred             EEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEe
Q 004468          120 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD  199 (751)
Q Consensus       120 ~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~  199 (751)
                      .+||+.++..        ..+.....|...|..++|+| +++.|+.++. +.|++||+.+++...........  .++..
T Consensus        94 ~~~d~~~~~~--------~~l~~~~~~~~~~~~~~~SP-dG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~--~~~~g  161 (723)
T 1xfd_A           94 VLSKIPHGDP--------QSLDPPEVSNAKLQYAGWGP-KGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEG--VIYNG  161 (723)
T ss_dssp             EEEESSSCCC--------EECCCTTCCSCCCSBCCBCS-STTCEEEEET-TEEEEESSSSSCCEEEECCCBTT--TEEEE
T ss_pred             EEEECCCCce--------EeccCCccccccccccEECC-CCCEEEEEEC-CeEEEEECCCCceEEEecCCCCC--ceECc
Confidence            8999986421        11233345666789999999 6677777776 79999999876532100000000  00000


Q ss_pred             cccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCC----------------------------------eEEEEeC
Q 004468          200 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDA----------------------------------FARLYDR  245 (751)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~----------------------------------~IriwD~  245 (751)
                      .. .   .+.. ......+.+++|+|+ +++|++++.|+                                  .|++||+
T Consensus       162 ~~-~---~v~~-ee~~~~~~~~~~SpD-g~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~  235 (723)
T 1xfd_A          162 LS-D---WLYE-EEILKTHIAHWWSPD-GTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGL  235 (723)
T ss_dssp             EC-C---HHHH-HTTSSSSEEEEECTT-SSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEES
T ss_pred             cc-c---eeEE-EEeccCcceEEECCC-CCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEEC
Confidence            00 0   0000 000113478999995 78888877553                                  6788887


Q ss_pred             CCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeC----CCcEEEEECCCCCcceeeeec-
Q 004468          246 RMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS----GEHVYLMDVNHAGGRAMRYTV-  320 (751)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~----d~~I~lwdl~~~~~~~~~~~~-  320 (751)
                      .+.+....+..            +...  ..+ ...+..++|||||++|++.+.    +..|++||+.++......... 
T Consensus       236 ~~~~~~~~l~~------------~~~~--~~~-~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~  300 (723)
T 1xfd_A          236 NGPTHDLEMMP------------PDDP--RMR-EYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDES  300 (723)
T ss_dssp             SSSCCCEECCC------------CCCG--GGS-SEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEEC
T ss_pred             CCCceeEEeeC------------CccC--CCc-cceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEecc
Confidence            76542221110            0000  001 225899999999998877653    358999999986543333222 


Q ss_pred             CCCc----eeEEeCCCCCCc
Q 004468          321 GDAS----KIMSFTPTLNGL  336 (751)
Q Consensus       321 ~~~~----~~~~~sp~~~~~  336 (751)
                      ....    ..++|+|+.+.+
T Consensus       301 ~~~~~~~~~~~~~spdg~~l  320 (723)
T 1xfd_A          301 EAWLHRQNEEPVFSKDGRKF  320 (723)
T ss_dssp             SSCCCCCCCCCEECTTSCSE
T ss_pred             CCEEeccCCCceEcCCCCeE
Confidence            1111    245666655443

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.78  E-value=3.3e-17  Score=173.77  Aligned_cols=197  Identities=13%  Similarity=0.127  Sum_probs=134.2

Q ss_pred             EECCCCC-EEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEE-CCCcEEEEECCCCCCCCCCC
Q 004468           57 SWNSKGS-LLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGA-GDAEVRLFNLSRFSGRGLDD  134 (751)
Q Consensus        57 ~~s~dg~-~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs-~Dg~V~vwd~~~~~~~~~~~  134 (751)
                      .|.++++ .+++++.++.|.+||..+++.+..+ ..+...+ +++|+|+  ++++++++ .++.|.+||+..+       
T Consensus         4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~-~~~~~~~-~~~~s~d--g~~l~~~~~~~~~i~~~d~~~~-------   72 (331)
T 3u4y_A            4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQI-TLGYDFV-DTAITSD--CSNVVVTSDFCQTLVQIETQLE-------   72 (331)
T ss_dssp             ---CCCCEEEEEEGGGTEEEEEETTTCCEEEEE-ECCCCEE-EEEECSS--SCEEEEEESTTCEEEEEECSSS-------
T ss_pred             eEcCCCCEEEEEecCCCeEEEEeCcccceeeeE-EccCCcc-eEEEcCC--CCEEEEEeCCCCeEEEEECCCC-------
Confidence            4555554 5788889999999999999988887 4556667 9999999  67655554 4899999999864       


Q ss_pred             CCCCC-ceeecccCCceeEEEEecCCCCEEEEEeCCC---cEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccC
Q 004468          135 NAITP-SALYQCHTRRVKKLAVEVGNPHVVWSASEDG---TLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLAD  210 (751)
Q Consensus       135 ~~~~~-~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg---~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  210 (751)
                         +. ...+..+..++.+++|+| ++++++++..++   .|.+||+.+++..           .. +.           
T Consensus        73 ---~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~i~v~d~~~~~~~-----------~~-~~-----------  125 (331)
T 3u4y_A           73 ---PPKVVAIQEGQSSMADVDITP-DDQFAVTVTGLNHPFNMQSYSFLKNKFI-----------ST-IP-----------  125 (331)
T ss_dssp             ---SCEEEEEEECSSCCCCEEECT-TSSEEEECCCSSSSCEEEEEETTTTEEE-----------EE-EE-----------
T ss_pred             ---ceeEEecccCCCCccceEECC-CCCEEEEecCCCCcccEEEEECCCCCeE-----------EE-EE-----------
Confidence               33 555666666666699999 567666555543   8999999876521           00 00           


Q ss_pred             CCCCccceEEEEEeCCCCcEEEEEeCCCe-EEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcC
Q 004468          211 PPKQTLSLKSCDISSTRPHLLLVGGSDAF-ARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP  289 (751)
Q Consensus       211 ~~~~~~~v~~i~~sp~~~~~l~sgs~D~~-IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fsp  289 (751)
                         ......+++|+|++..+++++..++. |++|++.....+...             ....+ ..   ...+..++|+|
T Consensus       126 ---~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~-------------~~~~~-~~---~~~~~~~~~sp  185 (331)
T 3u4y_A          126 ---IPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDT-------------GQEFI-SG---GTRPFNITFTP  185 (331)
T ss_dssp             ---CCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEE-------------EEEEE-CS---SSSEEEEEECT
T ss_pred             ---CCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeec-------------CCccc-cC---CCCccceEECC
Confidence               12245799999964446666667688 999998753221100             00000 01   11378999999


Q ss_pred             CCCEEEEEe-CCCcEEEEECCCC
Q 004468          290 NGEEVLLSY-SGEHVYLMDVNHA  311 (751)
Q Consensus       290 dg~~Ll~~s-~d~~I~lwdl~~~  311 (751)
                      +|++|++++ .++.|++||+.++
T Consensus       186 dg~~l~v~~~~~~~v~v~d~~~~  208 (331)
T 3u4y_A          186 DGNFAFVANLIGNSIGILETQNP  208 (331)
T ss_dssp             TSSEEEEEETTTTEEEEEECSST
T ss_pred             CCCEEEEEeCCCCeEEEEECCCC
Confidence            999776655 5899999998773

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.78  E-value=1.9e-17  Score=171.20  Aligned_cols=182  Identities=12%  Similarity=0.116  Sum_probs=126.2

Q ss_pred             EEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCC-CCCCCCCCCCCCCceeecc
Q 004468           67 SGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSR-FSGRGLDDNAITPSALYQC  145 (751)
Q Consensus        67 Sgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~-~~~~~~~~~~~~~~~~~~~  145 (751)
                      +++.|++|++||+.+++... + ..|...|.+++|+|+  +++|++++ ++.|++||+.. +          ++......
T Consensus        17 ~~~~~~~i~~~d~~~~~~~~-~-~~~~~~v~~~~~spd--g~~l~~~~-~~~i~~~d~~~~~----------~~~~~~~~   81 (297)
T 2ojh_A           17 GGSMRSSIEIFNIRTRKMRV-V-WQTPELFEAPNWSPD--GKYLLLNS-EGLLYRLSLAGDP----------SPEKVDTG   81 (297)
T ss_dssp             -CCCCEEEEEEETTTTEEEE-E-EEESSCCEEEEECTT--SSEEEEEE-TTEEEEEESSSCC----------SCEECCCT
T ss_pred             CCCcceeEEEEeCCCCceee-e-ccCCcceEeeEECCC--CCEEEEEc-CCeEEEEeCCCCC----------CceEeccc
Confidence            45689999999999887664 3 468999999999999  78999876 78999999986 4          23444444


Q ss_pred             c-CCceeEEEEecCCCCEEEEEe--CCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEE
Q 004468          146 H-TRRVKKLAVEVGNPHVVWSAS--EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCD  222 (751)
Q Consensus       146 h-~~~V~~l~~sp~~~~~l~s~s--~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~  222 (751)
                      | ...|.+++|+| ++..|++++  .++.+.+|.+......                     ...+.    ....+..++
T Consensus        82 ~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~l~~~~~~~~~---------------------~~~~~----~~~~~~~~~  135 (297)
T 2ojh_A           82 FATICNNDHGISP-DGALYAISDKVEFGKSAIYLLPSTGGT---------------------PRLMT----KNLPSYWHG  135 (297)
T ss_dssp             TCCCBCSCCEECT-TSSEEEEEECTTTSSCEEEEEETTCCC---------------------CEECC----SSSSEEEEE
T ss_pred             cccccccceEECC-CCCEEEEEEeCCCCcceEEEEECCCCc---------------------eEEee----cCCCccceE
Confidence            5 47789999999 667888888  4456666665432110                     00010    112378889


Q ss_pred             EeCCCCcEEE-EEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeC-C
Q 004468          223 ISSTRPHLLL-VGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-G  300 (751)
Q Consensus       223 ~sp~~~~~l~-sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~-d  300 (751)
                      |+|+ +++|+ ++..|+.++||++......            ...+       ..+. ..+.+++|+|+|++|++++. +
T Consensus       136 ~spd-g~~l~~~~~~~~~~~l~~~~~~~~~------------~~~~-------~~~~-~~~~~~~~s~dg~~l~~~~~~~  194 (297)
T 2ojh_A          136 WSPD-GKSFTYCGIRDQVFDIYSMDIDSGV------------ETRL-------THGE-GRNDGPDYSPDGRWIYFNSSRT  194 (297)
T ss_dssp             ECTT-SSEEEEEEEETTEEEEEEEETTTCC------------EEEC-------CCSS-SCEEEEEECTTSSEEEEEECTT
T ss_pred             ECCC-CCEEEEEECCCCceEEEEEECCCCc------------ceEc-------ccCC-CccccceECCCCCEEEEEecCC
Confidence            9996 55555 8889999999996432100            0101       1111 24899999999998887764 8


Q ss_pred             CcEEEEECCC
Q 004468          301 EHVYLMDVNH  310 (751)
Q Consensus       301 ~~I~lwdl~~  310 (751)
                      +.++||++..
T Consensus       195 ~~~~i~~~~~  204 (297)
T 2ojh_A          195 GQMQIWRVRV  204 (297)
T ss_dssp             SSCEEEEEET
T ss_pred             CCccEEEECC
Confidence            8888887653

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.77  E-value=2.6e-18  Score=190.30  Aligned_cols=219  Identities=11%  Similarity=0.070  Sum_probs=153.5

Q ss_pred             CCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCC----------eEEEE----ecccCCcceEEEEEecCCCCcEEE---
Q 004468           49 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSR----------KLLHS----IETGHSANVFCTKFVPETSDELVV---  111 (751)
Q Consensus        49 H~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~----------~~~~~----l~~~h~~~V~~v~fsp~s~~~~l~---  111 (751)
                      +...++.|++++++.+|++|+.|+ |+||+....          ..+..    ....|...|.+++|+|+  +++|+   
T Consensus        35 ~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spd--g~~lav~~  111 (434)
T 2oit_A           35 PKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCD--NLTLSACM  111 (434)
T ss_dssp             CCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTT--SCEEEEEE
T ss_pred             CCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCC--CCEEEEEE
Confidence            445789999999999999999998 888874311          01111    01246678999999999  78888   


Q ss_pred             -EEECCCcEEEEECCCCC-CCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCC
Q 004468          112 -SGAGDAEVRLFNLSRFS-GRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSS  189 (751)
Q Consensus       112 -sgs~Dg~V~vwd~~~~~-~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~  189 (751)
                       +|+.|++|+|||+.... +..........+..+.+|...|.+++|+|+++.+|++++.||+|++||++++...      
T Consensus       112 ~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~------  185 (434)
T 2oit_A          112 MSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKV------  185 (434)
T ss_dssp             EETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEE------
T ss_pred             eccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcce------
Confidence             88899999999987531 0000000001245667899999999999976899999999999999999876311      


Q ss_pred             CCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccc
Q 004468          190 HQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCP  269 (751)
Q Consensus       190 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~  269 (751)
                             ..            ...|...|.+++|+|+ +.+|++|+.|+.|++||.+ ++....+.              
T Consensus       186 -------~~------------~~~~~~~v~~v~wspd-g~~lasgs~dg~v~iwd~~-~~~~~~~~--------------  230 (434)
T 2oit_A          186 -------CA------------TLPSTVAVTSVCWSPK-GKQLAVGKQNGTVVQYLPT-LQEKKVIP--------------  230 (434)
T ss_dssp             -------EE------------EECGGGCEEEEEECTT-SSCEEEEETTSCEEEECTT-CCEEEEEC--------------
T ss_pred             -------ee------------ccCCCCceeEEEEcCC-CCEEEEEcCCCcEEEEccC-Cccccccc--------------
Confidence                   00            0125678999999995 8999999999999999998 33221111              


Q ss_pred             cccccCCccccceEEEEEcCCCCEEEEEe-CCC------cEEEEECCCC
Q 004468          270 MHLSEHGRSSLHLTHVTFSPNGEEVLLSY-SGE------HVYLMDVNHA  311 (751)
Q Consensus       270 ~~~~~~g~~~~~vt~v~fspdg~~Ll~~s-~d~------~I~lwdl~~~  311 (751)
                      .+..........|.+++|++++.++++.+ .+|      .+++|++.+.
T Consensus       231 ~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~  279 (434)
T 2oit_A          231 CPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK  279 (434)
T ss_dssp             CCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred             CCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence            01100111122599999999998876544 343      3999999874

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.77  E-value=4.6e-17  Score=191.79  Aligned_cols=201  Identities=12%  Similarity=-0.018  Sum_probs=137.9

Q ss_pred             CcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCC----
Q 004468           51 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSR----  126 (751)
Q Consensus        51 ~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~----  126 (751)
                      ..|.+++|+|| +.|+.+. |+.|++||+.+++....  ..+...+.+++|+|+  |++|+++ .|+.|++||+..    
T Consensus        82 ~~v~~~~~spd-~~~~~~~-~~~i~~~d~~~~~~~~l--~~~~~~~~~~~~Spd--G~~la~~-~~~~i~v~~~~~~~~~  154 (706)
T 2z3z_A           82 FPSFRTLDAGR-GLVVLFT-QGGLVGFDMLARKVTYL--FDTNEETASLDFSPV--GDRVAYV-RNHNLYIARGGKLGEG  154 (706)
T ss_dssp             CCCEEEEETTT-TEEEEEE-TTEEEEEETTTTEEEEE--ECCTTCCTTCEECTT--SSEEEEE-ETTEEEEEECBCTTSC
T ss_pred             cCceeEEECCC-CeEEEEE-CCEEEEEECCCCceEEc--cCCcccccCCcCCCC--CCEEEEE-ECCeEEEEecCccccc
Confidence            56999999999 6555554 59999999998876543  356778999999999  8888885 689999999986    


Q ss_pred             -CCCCCCCCCCCCCceeecccC--------------CceeEEEEecCCCCEEEEEeC-----------------------
Q 004468          127 -FSGRGLDDNAITPSALYQCHT--------------RRVKKLAVEVGNPHVVWSASE-----------------------  168 (751)
Q Consensus       127 -~~~~~~~~~~~~~~~~~~~h~--------------~~V~~l~~sp~~~~~l~s~s~-----------------------  168 (751)
                       +..          ......+.              ..+.+++|+| +++.|++++.                       
T Consensus       155 ~g~~----------~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~Sp-Dg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~  223 (706)
T 2z3z_A          155 MSRA----------IAVTIDGTETLVYGQAVHQREFGIEKGTFWSP-KGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPL  223 (706)
T ss_dssp             CCCC----------EESCSCCBTTEEESSCCGGGCTTCCCSEEECT-TSSEEEEEEEECTTSCCEEEEECCSSSCEEEEE
T ss_pred             CCCc----------EEeccCCCCCeEcccchhhhhcCCCceEEECC-CCCEEEEEEECCCCCceEEeeccCCCCCceEEe
Confidence             421          22222222              2358999999 6678878772                       


Q ss_pred             ----------CCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCC
Q 004468          169 ----------DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDA  238 (751)
Q Consensus       169 ----------Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~  238 (751)
                                +..|++||+.+++                       ...+.....+...+.+++|+|+ +++|++++.++
T Consensus       224 ~y~~~g~~~~~~~l~~~d~~~~~-----------------------~~~~~~~~~~~~~~~~~~~spd-g~~l~~~~~~~  279 (706)
T 2z3z_A          224 YYPMAGTPSHHVTVGIYHLATGK-----------------------TVYLQTGEPKEKFLTNLSWSPD-ENILYVAEVNR  279 (706)
T ss_dssp             CCCBTTSCCCEEEEEEEETTTTE-----------------------EEECCCCSCTTCEEEEEEECTT-SSEEEEEEECT
T ss_pred             eCCCCCCCCCeeEEEEEECCCCc-----------------------eEeeccCCCCceeEeeEEEECC-CCEEEEEEeCC
Confidence                      3456666655443                       2222222235567899999994 78888887775


Q ss_pred             -----eEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcC--CCCEEEEEeCCCcEEEEECC
Q 004468          239 -----FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP--NGEEVLLSYSGEHVYLMDVN  309 (751)
Q Consensus       239 -----~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fsp--dg~~Ll~~s~d~~I~lwdl~  309 (751)
                           .|++||+.+++....+             .....  ..... .+..++|+|  ||++|+++..++.++||+++
T Consensus       280 ~~~~~~v~~~d~~~g~~~~~~-------------~~~~~--~~~~~-~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~  341 (706)
T 2z3z_A          280 AQNECKVNAYDAETGRFVRTL-------------FVETD--KHYVE-PLHPLTFLPGSNNQFIWQSRRDGWNHLYLYD  341 (706)
T ss_dssp             TSCEEEEEEEETTTCCEEEEE-------------EEEEC--SSCCC-CCSCCEECTTCSSEEEEEECTTSSCEEEEEE
T ss_pred             CCCeeEEEEEECCCCceeeEE-------------EEccC--CCeEC-ccCCceeecCCCCEEEEEEccCCccEEEEEE
Confidence                 9999999876321111             00000  00000 245689999  99999988889988888765

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.77  E-value=1.7e-16  Score=169.41  Aligned_cols=206  Identities=9%  Similarity=0.077  Sum_probs=147.0

Q ss_pred             CCCcEEEEEECCCCCEEEEEeC-------CCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCc-EEEEEECCCcEE
Q 004468           49 HQGCVNAISWNSKGSLLISGSD-------DTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDE-LVVSGAGDAEVR  120 (751)
Q Consensus        49 H~~~V~~l~~s~dg~~LaSgs~-------Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~-~l~sgs~Dg~V~  120 (751)
                      ....+..++|+|+|++|++++.       ++.|.+||..+++.+..+.  ....+..++|+|+  ++ +++++..++.|.
T Consensus        39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~--~~~~~~~~~~s~d--g~~l~v~~~~~~~v~  114 (353)
T 3vgz_A           39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIH--NDLKPFGATINNT--TQTLWFGNTVNSAVT  114 (353)
T ss_dssp             EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEE--ESSCCCSEEEETT--TTEEEEEETTTTEEE
T ss_pred             hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEe--cCCCcceEEECCC--CCEEEEEecCCCEEE
Confidence            4567889999999998888874       5689999999999888873  2345889999999  66 555666689999


Q ss_pred             EEECCCCCCCCCCCCCCCCceeecccCC---------ceeEEEEecCCCCEEEEE-eCCCcEEEEecCCCCCCCCCCCCC
Q 004468          121 LFNLSRFSGRGLDDNAITPSALYQCHTR---------RVKKLAVEVGNPHVVWSA-SEDGTLRQHDFRQGSSCPPAGSSH  190 (751)
Q Consensus       121 vwd~~~~~~~~~~~~~~~~~~~~~~h~~---------~V~~l~~sp~~~~~l~s~-s~Dg~I~iwDlr~~~~~~~~~~~~  190 (751)
                      +||+.++          +.+..+..+..         .+.+++|+|++..+++++ +.++.|.+||+.+++..       
T Consensus       115 ~~d~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~-------  177 (353)
T 3vgz_A          115 AIDAKTG----------EVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLK-------  177 (353)
T ss_dssp             EEETTTC----------CEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEE-------
T ss_pred             EEeCCCC----------eeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceE-------
Confidence            9999864          33444444332         268899999554455444 35889999999876421       


Q ss_pred             CccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCcccccccc
Q 004468          191 QECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPM  270 (751)
Q Consensus       191 ~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (751)
                             ...           +.....+.+++|+|+ ++++++++.++.|.+||..+.+....+..              
T Consensus       178 -------~~~-----------~~~~~~~~~~~~s~d-g~~l~~~~~~~~i~~~d~~~~~~~~~~~~--------------  224 (353)
T 3vgz_A          178 -------TAI-----------QNTGKMSTGLALDSE-GKRLYTTNADGELITIDTADNKILSRKKL--------------  224 (353)
T ss_dssp             -------EEE-----------CCCCTTCCCCEEETT-TTEEEEECTTSEEEEEETTTTEEEEEEEC--------------
T ss_pred             -------EEe-----------cCCCCccceEEECCC-CCEEEEEcCCCeEEEEECCCCeEEEEEEc--------------
Confidence                   110           001224677899995 78888899999999999987654332211              


Q ss_pred             ccccCCccccceEEEEEcCCCCEEEEEeC-CCcEEEEECCCC
Q 004468          271 HLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GEHVYLMDVNHA  311 (751)
Q Consensus       271 ~~~~~g~~~~~vt~v~fspdg~~Ll~~s~-d~~I~lwdl~~~  311 (751)
                        ...++.. .+..++|+|+|++|+++.. ++.|++||+.++
T Consensus       225 --~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~  263 (353)
T 3vgz_A          225 --LDDGKEH-FFINISLDTARQRAFITDSKAAEVLVVDTRNG  263 (353)
T ss_dssp             --CCSSSCC-CEEEEEEETTTTEEEEEESSSSEEEEEETTTC
T ss_pred             --CCCCCCc-ccceEEECCCCCEEEEEeCCCCEEEEEECCCC
Confidence              0011112 4788999999998877765 599999998773

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.75  E-value=4.5e-17  Score=180.28  Aligned_cols=221  Identities=10%  Similarity=0.013  Sum_probs=148.1

Q ss_pred             cCCCcEEEEEECCCCCEEE----EEeCCCcEEEEeCCCC--------eE---EEEecccCCcceEEEEEecCCCCcEEEE
Q 004468           48 GHQGCVNAISWNSKGSLLI----SGSDDTHINVWSYSSR--------KL---LHSIETGHSANVFCTKFVPETSDELVVS  112 (751)
Q Consensus        48 gH~~~V~~l~~s~dg~~La----Sgs~Dg~I~IWd~~~~--------~~---~~~l~~~h~~~V~~v~fsp~s~~~~l~s  112 (751)
                      .|.+.|++++|+|+|++||    +|+.|++|+|||+.++        +.   +..+ .+|...|.+++|+|+. +.+|++
T Consensus        90 ~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~-~~h~~~V~~v~~~p~~-~~~las  167 (434)
T 2oit_A           90 PMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLL-KDAGGMVIDMKWNPTV-PSMVAV  167 (434)
T ss_dssp             CCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECC-CSGGGSEEEEEECSSC-TTEEEE
T ss_pred             cCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeecc-CCCCCceEEEEECCCC-CCEEEE
Confidence            3677899999999999999    8899999999998654        21   2333 6899999999999984 689999


Q ss_pred             EECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCc
Q 004468          113 GAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQE  192 (751)
Q Consensus       113 gs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~  192 (751)
                      |+.|++|++||+...          ..+....+|...|++++|+| ++++|++|+.||+|++||++ ++..         
T Consensus       168 ~s~Dg~v~iwD~~~~----------~~~~~~~~~~~~v~~v~wsp-dg~~lasgs~dg~v~iwd~~-~~~~---------  226 (434)
T 2oit_A          168 CLADGSIAVLQVTET----------VKVCATLPSTVAVTSVCWSP-KGKQLAVGKQNGTVVQYLPT-LQEK---------  226 (434)
T ss_dssp             EETTSCEEEEEESSS----------EEEEEEECGGGCEEEEEECT-TSSCEEEEETTSCEEEECTT-CCEE---------
T ss_pred             EECCCeEEEEEcCCC----------cceeeccCCCCceeEEEEcC-CCCEEEEEcCCCcEEEEccC-Cccc---------
Confidence            999999999999864          22445567899999999999 57899999999999999998 3211         


Q ss_pred             cceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEE-EeCCC------eEEEEeCCCCCCccccCCCCCCCCccc
Q 004468          193 CRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLV-GGSDA------FARLYDRRMLPPLTSCQKRMSPPPCVN  265 (751)
Q Consensus       193 ~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~s-gs~D~------~IriwD~~~~~~~~~~~~~~~~~~~~~  265 (751)
                         ..+...      ......|...|.+++|+++ ..++++ +..||      .+++|++++.+....        ....
T Consensus       227 ---~~~~~~------~~~~~~~~~~v~~v~w~~~-~~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~--------~~~~  288 (434)
T 2oit_A          227 ---KVIPCP------PFYESDHPVRVLDVLWIGT-YVFAIVYAAADGTLETSPDVVMALLPKKEEKHP--------EIFV  288 (434)
T ss_dssp             ---EEECCC------TTCCTTSCEEEEEEEEEET-TEEEEEEEETTCCSSSCCEEEEEECCCTTTCCC--------CEEE
T ss_pred             ---ccccCC------cccCCCCceeEEEEEEecC-ceEEEEEccCCCccCCCCceEEEEeccCCCCCC--------cceE
Confidence               000000      0011124568999999994 455443 44443      389999986532110        0111


Q ss_pred             cccccccccCCccccceEEEEEcCCCCEEEEEeC-CCcEEEEECCC
Q 004468          266 YFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GEHVYLMDVNH  310 (751)
Q Consensus       266 ~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~-d~~I~lwdl~~  310 (751)
                      .+........+... +...+.+-++.++|++++. ...|.|+....
T Consensus       289 ~~~~~~~~~~~~r~-~~~~~~~l~dw~l~~v~s~~s~dv~vl~~~~  333 (434)
T 2oit_A          289 NFMEPCYGSCTERQ-HHYYLSYIEEWDLVLAASAASTEVSILARQS  333 (434)
T ss_dssp             ECCCSSCCCCSSSC-CCEEEEEEGGGTEEEEEETTCSBCEEEEECT
T ss_pred             ecccCCCCCCCCcC-cceeeehhccCCEEEEecCCCCceeEEEecC
Confidence            11111010001111 1224445578888777665 56677776443

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.74  E-value=1.3e-16  Score=183.70  Aligned_cols=195  Identities=10%  Similarity=0.031  Sum_probs=135.7

Q ss_pred             CCcEEEEEECCCCCEEEEEeC-CCcEEEEeCCCCeEEEEecccCC-cceEEEEEecCCCCcEEEEEEC---CCcEEEEEC
Q 004468           50 QGCVNAISWNSKGSLLISGSD-DTHINVWSYSSRKLLHSIETGHS-ANVFCTKFVPETSDELVVSGAG---DAEVRLFNL  124 (751)
Q Consensus        50 ~~~V~~l~~s~dg~~LaSgs~-Dg~I~IWd~~~~~~~~~l~~~h~-~~V~~v~fsp~s~~~~l~sgs~---Dg~V~vwd~  124 (751)
                      ...|++++|+|||++||+++. ||++.||++.++.. ..+ +.|. ..|.+++|+|+   +++++++.   +...+||.+
T Consensus        21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~-~~l-t~~~~~~~~~~~~spd---~~l~~~~~~~g~~~~~l~~~   95 (582)
T 3o4h_A           21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGET-VKL-NREPINSVLDPHYGVG---RVILVRDVSKGAEQHALFKV   95 (582)
T ss_dssp             HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEE-EEC-CSSCCSEECEECTTCS---EEEEEEECSTTSCCEEEEEE
T ss_pred             ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCc-Eee-ecccccccccccCCCC---eEEEEeccCCCCcceEEEEE
Confidence            457999999999999999987 99999999866554 445 4454 68999999987   67777775   566677766


Q ss_pred             CC--CCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEeccc
Q 004468          125 SR--FSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRC  202 (751)
Q Consensus       125 ~~--~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~  202 (751)
                      ..  ..         ... .+..+ ..+...+|+|++..++++.+.++.+.+||+.+++..            .+..   
T Consensus        96 ~~~~~g---------~~~-~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~------------~l~~---  149 (582)
T 3o4h_A           96 NTSRPG---------EEQ-RLEAV-KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLR------------ELAR---  149 (582)
T ss_dssp             ETTSTT---------CCE-ECTTS-CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEE------------EEEE---
T ss_pred             eccCCC---------ccc-cccCC-CCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEE------------Eeec---
Confidence            53  11         111 22222 223466888865555445555555569999876421            1111   


Q ss_pred             CceecccCCCCCccceEEEEEeCCCCcEEEEEeCC----CeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCcc
Q 004468          203 GAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD----AFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRS  278 (751)
Q Consensus       203 ~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D----~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  278 (751)
                                 +..  .+++|+| ++++|++++.|    ..|++||+.+++...              +       .++.
T Consensus       150 -----------~~~--~~~~~sp-DG~~la~~~~~~~~~~~i~~~d~~~g~~~~--------------l-------~~~~  194 (582)
T 3o4h_A          150 -----------LPG--FGFVSDI-RGDLIAGLGFFGGGRVSLFTSNLSSGGLRV--------------F-------DSGE  194 (582)
T ss_dssp             -----------ESS--CEEEEEE-ETTEEEEEEEEETTEEEEEEEETTTCCCEE--------------E-------CCSS
T ss_pred             -----------CCC--ceEEECC-CCCEEEEEEEcCCCCeEEEEEcCCCCCceE--------------e-------ecCC
Confidence                       011  6889999 58999988877    789999988764321              1       1122


Q ss_pred             ccceEEEEEcCCCCEEEEEeCCC--cEEEEECCCC
Q 004468          279 SLHLTHVTFSPNGEEVLLSYSGE--HVYLMDVNHA  311 (751)
Q Consensus       279 ~~~vt~v~fspdg~~Ll~~s~d~--~I~lwdl~~~  311 (751)
                      . .+..++|||||++|+++..++  .|++||+.++
T Consensus       195 ~-~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~  228 (582)
T 3o4h_A          195 G-SFSSASISPGMKVTAGLETAREARLVTVDPRDG  228 (582)
T ss_dssp             C-EEEEEEECTTSCEEEEEECSSCEEEEEECTTTC
T ss_pred             C-ccccceECCCCCEEEEccCCCeeEEEEEcCCCC
Confidence            2 479999999999999887888  8999999874

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.73  E-value=1.1e-16  Score=169.33  Aligned_cols=146  Identities=6%  Similarity=-0.037  Sum_probs=105.0

Q ss_pred             CEEEEEeCCCcEEEEeCCCCeEEEEecccCCc-ceEEEEEecCCCCcE-EEEEECCCcEEEEECCCCCCCCCCCCCCCCc
Q 004468           63 SLLISGSDDTHINVWSYSSRKLLHSIETGHSA-NVFCTKFVPETSDEL-VVSGAGDAEVRLFNLSRFSGRGLDDNAITPS  140 (751)
Q Consensus        63 ~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~-~V~~v~fsp~s~~~~-l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~  140 (751)
                      ++|++++.++.|.+||+.+++.+..+..++.. .+..++|+|+  ++. +++++.++.|.+||+.++          +.+
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~d--g~~l~v~~~~~~~v~~~d~~~~----------~~~   69 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPG--GRIAYATVNKSESLVKIDLVTG----------ETL   69 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTT--SSEEEEEETTTTEEEEEETTTC----------CEE
T ss_pred             cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCC--CCEEEEEeCCCCeEEEEECCCC----------CeE
Confidence            47999999999999999999988887434433 4889999999  655 566677899999999864          223


Q ss_pred             eeecc-----cCCceeEEEEecCCCCEEEEEe------------CCCcEEEEecCCCCCCCCCCCCCCccceEEEecccC
Q 004468          141 ALYQC-----HTRRVKKLAVEVGNPHVVWSAS------------EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCG  203 (751)
Q Consensus       141 ~~~~~-----h~~~V~~l~~sp~~~~~l~s~s------------~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~  203 (751)
                      ..+..     |...+..++|+| ++..+++++            .++.|.+||+.+++..              ....  
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~--------------~~~~--  132 (337)
T 1pby_B           70 GRIDLSTPEERVKSLFGAALSP-DGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRR--------------KAFE--  132 (337)
T ss_dssp             EEEECCBTTEEEECTTCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEE--------------EEEE--
T ss_pred             eeEEcCCcccccccccceEECC-CCCEEEEEecccccccccccccCceEEEEECCCCcEE--------------EEEe--
Confidence            33332     123678899999 556666665            5799999999775421              1000  


Q ss_pred             ceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCC
Q 004468          204 AKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPP  250 (751)
Q Consensus       204 ~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~  250 (751)
                                ....+.+++|+|+ +++|+++  ++.|++||+.+.+.
T Consensus       133 ----------~~~~~~~~~~s~d-g~~l~~~--~~~i~~~d~~~~~~  166 (337)
T 1pby_B          133 ----------APRQITMLAWARD-GSKLYGL--GRDLHVMDPEAGTL  166 (337)
T ss_dssp             ----------CCSSCCCEEECTT-SSCEEEE--SSSEEEEETTTTEE
T ss_pred             ----------CCCCcceeEECCC-CCEEEEe--CCeEEEEECCCCcE
Confidence                      1123667889995 6766666  68899999987653

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.71  E-value=6.4e-16  Score=163.98  Aligned_cols=267  Identities=7%  Similarity=0.056  Sum_probs=165.8

Q ss_pred             ccccccchhh-hccccccEEeccCCCcEEEEEECCCCCEEEEEeCC-CcEEEEeCC--CCe--EEEEecccCCcceEEEE
Q 004468           27 NHSLQMHSSL-VRRLSQERELEGHQGCVNAISWNSKGSLLISGSDD-THINVWSYS--SRK--LLHSIETGHSANVFCTK  100 (751)
Q Consensus        27 ~~~l~~~~~~-i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~D-g~I~IWd~~--~~~--~~~~l~~~h~~~V~~v~  100 (751)
                      +..+.+|+.. ..+++....+ .|...+.+++|+|+|++|++++.+ +.|.+|++.  ++.  .+..+ ..+ ..+.+++
T Consensus        14 ~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~   90 (343)
T 1ri6_A           14 SQQIHVWNLNHEGALTLTQVV-DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAES-ALP-GSLTHIS   90 (343)
T ss_dssp             GTEEEEEEECTTSCEEEEEEE-ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEE-ECS-SCCSEEE
T ss_pred             CCeEEEEEECCCCcEEEeeeE-ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeecccc-ccC-CCCcEEE
Confidence            4566666542 2233334443 477889999999999999988886 999999987  554  33444 333 3889999


Q ss_pred             EecCCCCcEEEEEE-CCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEe-CCCcEEEEecC
Q 004468          101 FVPETSDELVVSGA-GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSAS-EDGTLRQHDFR  178 (751)
Q Consensus       101 fsp~s~~~~l~sgs-~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s-~Dg~I~iwDlr  178 (751)
                      |+|+  +++|++++ .++.|.+||+..+.  .     ...+..+.. ...+.+++|+| ++..+++++ .++.|++||+.
T Consensus        91 ~s~d--g~~l~~~~~~~~~i~~~d~~~~~--~-----~~~~~~~~~-~~~~~~~~~s~-dg~~l~~~~~~~~~v~~~d~~  159 (343)
T 1ri6_A           91 TDHQ--GQFVFVGSYNAGNVSVTRLEDGL--P-----VGVVDVVEG-LDGCHSANISP-DNRTLWVPALKQDRICLFTVS  159 (343)
T ss_dssp             ECTT--SSEEEEEETTTTEEEEEEEETTE--E-----EEEEEEECC-CTTBCCCEECT-TSSEEEEEEGGGTEEEEEEEC
T ss_pred             EcCC--CCEEEEEecCCCeEEEEECCCCc--c-----ccccccccC-CCCceEEEECC-CCCEEEEecCCCCEEEEEEec
Confidence            9999  77776555 48899999995210  0     023344443 34588999999 455555555 89999999998


Q ss_pred             C-CCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEE-EEEeCCCeEEEEeCCCCCCccccCC
Q 004468          179 Q-GSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLL-LVGGSDAFARLYDRRMLPPLTSCQK  256 (751)
Q Consensus       179 ~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l-~sgs~D~~IriwD~~~~~~~~~~~~  256 (751)
                      + ++.            ..+...      ....  .....+..++|+|+ ++++ +++..++.|++||+........   
T Consensus       160 ~~~~~------------~~~~~~------~~~~--~~~~~~~~~~~~pd-g~~l~~~~~~~~~i~~~~~~~~~g~~~---  215 (343)
T 1ri6_A          160 DDGHL------------VAQDPA------EVTT--VEGAGPRHMVFHPN-EQYAYCVNELNSSVDVWELKDPHGNIE---  215 (343)
T ss_dssp             TTSCE------------EEEEEE------EEEC--STTCCEEEEEECTT-SSEEEEEETTTTEEEEEESSCTTSCCE---
T ss_pred             CCCce------------eeeccc------cccc--CCCCCcceEEECCC-CCEEEEEeCCCCEEEEEEecCCCCcEE---
Confidence            6 321            000000      0000  01235778999996 5655 5555899999999964211000   


Q ss_pred             CCCCCCccccccccccccCCc-cccceEEEEEcCCCCEEEEEe-CCCcEEEEECCC--CCcce-eeeecCCCceeEEeCC
Q 004468          257 RMSPPPCVNYFCPMHLSEHGR-SSLHLTHVTFSPNGEEVLLSY-SGEHVYLMDVNH--AGGRA-MRYTVGDASKIMSFTP  331 (751)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~g~-~~~~vt~v~fspdg~~Ll~~s-~d~~I~lwdl~~--~~~~~-~~~~~~~~~~~~~~sp  331 (751)
                            .......  . ..++ ....+..++|+|+|++|+++. .++.|++||+..  +.... ........+..++|+|
T Consensus       216 ------~~~~~~~--~-~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~s~  286 (343)
T 1ri6_A          216 ------CVQTLDM--M-PENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDH  286 (343)
T ss_dssp             ------EEEEEEC--S-CTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECT
T ss_pred             ------EEeeccc--c-CccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCccceEEECC
Confidence                  0000000  0 0010 012477899999999888655 689999999983  22122 1223334477889999


Q ss_pred             CCCCcccCC
Q 004468          332 TLNGLELQP  340 (751)
Q Consensus       332 ~~~~~~~~~  340 (751)
                      +.+.+....
T Consensus       287 dg~~l~~~~  295 (343)
T 1ri6_A          287 SGKYLIAAG  295 (343)
T ss_dssp             TSSEEEEEC
T ss_pred             CCCEEEEec
Confidence            877655543

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.69  E-value=1.3e-15  Score=165.12  Aligned_cols=212  Identities=14%  Similarity=0.118  Sum_probs=142.6

Q ss_pred             ccccEEeccCCCcEEE-----EEECCCCCEEEEEeC-CCc--EEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEE
Q 004468           40 LSQERELEGHQGCVNA-----ISWNSKGSLLISGSD-DTH--INVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVV  111 (751)
Q Consensus        40 ~~~~~~L~gH~~~V~~-----l~~s~dg~~LaSgs~-Dg~--I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~  111 (751)
                      ......|..|.+.+..     .+|+|||++||.++. ++.  |.+||+.+++..... .++...+..+.|+|+  ++.|+
T Consensus        20 g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt-~~~~~~~~~~~~spd--g~~l~   96 (388)
T 3pe7_A           20 GAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLT-EGRGDNTFGGFLSPD--DDALF   96 (388)
T ss_dssp             CCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECC-CSSCBCSSSCEECTT--SSEEE
T ss_pred             CcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEee-eCCCCCccceEEcCC--CCEEE
Confidence            4556778888877776     899999999999987 674  888899888776555 667767777899999  89999


Q ss_pred             EEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEE--ecCCCCEEEEE----------------------e
Q 004468          112 SGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAV--EVGNPHVVWSA----------------------S  167 (751)
Q Consensus       112 sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~--sp~~~~~l~s~----------------------s  167 (751)
                      .++.++.|++||+.++          +....+..+...+....|  +| ++.+++..                      +
T Consensus        97 ~~~~~~~l~~~d~~~g----------~~~~~~~~~~~~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (388)
T 3pe7_A           97 YVKDGRNLMRVDLATL----------EENVVYQVPAEWVGYGTWVANS-DCTKLVGIEIRREDWVPLTDWKKFHEFYFTK  165 (388)
T ss_dssp             EEETTTEEEEEETTTC----------CEEEEEECCTTEEEEEEEEECT-TSSEEEEEEEEGGGCCCCCSHHHHHHHGGGC
T ss_pred             EEeCCCeEEEEECCCC----------cceeeeechhhcccccceeECC-CCCeeccccccCcccccccccchhhhhhccC
Confidence            9999999999999865          223444555555544444  67 55666532                      2


Q ss_pred             CCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCC------CeEE
Q 004468          168 EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD------AFAR  241 (751)
Q Consensus       168 ~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D------~~Ir  241 (751)
                      .+..|.+||+.+++.            ..+..              +...+..+.|+|.++..|+....+      ..|.
T Consensus       166 ~~~~l~~~d~~~g~~------------~~l~~--------------~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~  219 (388)
T 3pe7_A          166 PCCRLMRVDLKTGES------------TVILQ--------------ENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMW  219 (388)
T ss_dssp             CCEEEEEEETTTCCE------------EEEEE--------------ESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEE
T ss_pred             CcceEEEEECCCCce------------EEeec--------------CCccccccEECCCCCCEEEEEEecCCCCCcceEE
Confidence            345677788776541            11111              234578899999336777666653      3777


Q ss_pred             EEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeC-CC----cEEEEECCCC
Q 004468          242 LYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GE----HVYLMDVNHA  311 (751)
Q Consensus       242 iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~-d~----~I~lwdl~~~  311 (751)
                      ++|.......              .+.      .......+..++|+|||+.|+..+. ++    .|++||+.++
T Consensus       220 ~~d~~~~~~~--------------~l~------~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g  274 (388)
T 3pe7_A          220 LINEDGTNMR--------------KVK------THAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETL  274 (388)
T ss_dssp             EEETTSCCCE--------------ESC------CCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTC
T ss_pred             EEeCCCCceE--------------Eee------eCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCC
Confidence            8887643211              010      0111113778899999998765443 22    3999999885

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.69  E-value=7.2e-16  Score=181.56  Aligned_cols=216  Identities=11%  Similarity=0.026  Sum_probs=133.6

Q ss_pred             cccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEE-EEecccCC-----------------cceEEEEEe
Q 004468           41 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLL-HSIETGHS-----------------ANVFCTKFV  102 (751)
Q Consensus        41 ~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~-~~l~~~h~-----------------~~V~~v~fs  102 (751)
                      +....|..+  .++.+.|.  |+.+++++.|+ | +||+.+++.+ ..+ ..|.                 ..|.+++|+
T Consensus        18 ~~~~~~~~~--~~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~l-~~~~~~~~~l~~~~~~~~~~~~~v~~~~~s   90 (706)
T 2z3z_A           18 KEFYNFYPE--YVVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTTR-FSAADLNALMPEGCKFQTTDAFPSFRTLDA   90 (706)
T ss_dssp             ------------CTTCEEE--TTEEEEEETTE-E-EEEC-------CEE-EEHHHHHTTC-----------CCCEEEEET
T ss_pred             ccccccccc--cCCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEEe-echhHhhhhccchhccccccccCceeEEEC
Confidence            333444444  25567888  77788888888 8 9999998873 344 2332                 569999999


Q ss_pred             cCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCC---
Q 004468          103 PETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQ---  179 (751)
Q Consensus       103 p~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~---  179 (751)
                      |+  +.++++  .|+.|++||+.++          + ...+..+...+.+++|+| +++.|+++ .|+.|++||+.+   
T Consensus        91 pd--~~~~~~--~~~~i~~~d~~~~----------~-~~~l~~~~~~~~~~~~Sp-dG~~la~~-~~~~i~v~~~~~~~~  153 (706)
T 2z3z_A           91 GR--GLVVLF--TQGGLVGFDMLAR----------K-VTYLFDTNEETASLDFSP-VGDRVAYV-RNHNLYIARGGKLGE  153 (706)
T ss_dssp             TT--TEEEEE--ETTEEEEEETTTT----------E-EEEEECCTTCCTTCEECT-TSSEEEEE-ETTEEEEEECBCTTS
T ss_pred             CC--CeEEEE--ECCEEEEEECCCC----------c-eEEccCCcccccCCcCCC-CCCEEEEE-ECCeEEEEecCcccc
Confidence            98  455555  3599999999863          1 334455777899999999 66777774 689999999987   


Q ss_pred             --CCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEe----------------------
Q 004468          180 --GSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGG----------------------  235 (751)
Q Consensus       180 --~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs----------------------  235 (751)
                        ++..........   .+.....        ....+...+.++.|+|+ +++|++++                      
T Consensus       154 ~~g~~~~~~~~~~~---~~~~g~~--------~~~ee~~~~~~~~~SpD-g~~la~~~~d~~~~~~~~~~~~~~~~~~~~  221 (706)
T 2z3z_A          154 GMSRAIAVTIDGTE---TLVYGQA--------VHQREFGIEKGTFWSPK-GSCLAFYRMDQSMVKPTPIVDYHPLEAESK  221 (706)
T ss_dssp             CCCCCEESCSCCBT---TEEESSC--------CGGGCTTCCCSEEECTT-SSEEEEEEEECTTSCCEEEEECCSSSCEEE
T ss_pred             cCCCcEEeccCCCC---CeEcccc--------hhhhhcCCCceEEECCC-CCEEEEEEECCCCCceEEeeccCCCCCceE
Confidence              543211110000   0111000        00011234678999995 78888887                      


Q ss_pred             -----------CCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCC---
Q 004468          236 -----------SDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGE---  301 (751)
Q Consensus       236 -----------~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~---  301 (751)
                                 .+..|++||+.+.+.....                 . ...+. ..+.+++|+|||++|++++.++   
T Consensus       222 ~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~-----------------~-~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~  282 (706)
T 2z3z_A          222 PLYYPMAGTPSHHVTVGIYHLATGKTVYLQ-----------------T-GEPKE-KFLTNLSWSPDENILYVAEVNRAQN  282 (706)
T ss_dssp             EECCCBTTSCCCEEEEEEEETTTTEEEECC-----------------C-CSCTT-CEEEEEEECTTSSEEEEEEECTTSC
T ss_pred             EeeCCCCCCCCCeeEEEEEECCCCceEeec-----------------c-CCCCc-eeEeeEEEECCCCEEEEEEeCCCCC
Confidence                       4578999999765421110                 0 01122 2489999999999999988765   


Q ss_pred             --cEEEEECCCC
Q 004468          302 --HVYLMDVNHA  311 (751)
Q Consensus       302 --~I~lwdl~~~  311 (751)
                        .|++||+.++
T Consensus       283 ~~~v~~~d~~~g  294 (706)
T 2z3z_A          283 ECKVNAYDAETG  294 (706)
T ss_dssp             EEEEEEEETTTC
T ss_pred             eeEEEEEECCCC
Confidence              8999998874

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.69  E-value=1.3e-15  Score=161.31  Aligned_cols=253  Identities=9%  Similarity=0.051  Sum_probs=169.6

Q ss_pred             cccccccchhhhccccccEEeccCCCcEEEEEECCCCCEEEEEeC-CCcEEEEeCCCCeE-EEEecccCCcceEEEEEec
Q 004468           26 VNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSD-DTHINVWSYSSRKL-LHSIETGHSANVFCTKFVP  103 (751)
Q Consensus        26 ~~~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~-Dg~I~IWd~~~~~~-~~~l~~~h~~~V~~v~fsp  103 (751)
                      .+..+.+++.  .+.+.+..+..+...+ +++|+|+|++|++++. ++.|.+||+.+++. ...+ ..+...+.+++|+|
T Consensus        18 ~~~~v~~~d~--~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~s~   93 (331)
T 3u4y_A           18 HLRRISFFST--DTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAI-QEGQSSMADVDITP   93 (331)
T ss_dssp             GGTEEEEEET--TTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEE-EECSSCCCCEEECT
T ss_pred             CCCeEEEEeC--cccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEec-ccCCCCccceEECC
Confidence            3456677654  3445566666677777 9999999996666655 89999999998887 6555 56666666699999


Q ss_pred             CCCCcEEEEEECCC---cEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCc-EEEEecCC
Q 004468          104 ETSDELVVSGAGDA---EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGT-LRQHDFRQ  179 (751)
Q Consensus       104 ~s~~~~l~sgs~Dg---~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~-I~iwDlr~  179 (751)
                      +  +++|+++..++   .|.+||+...          +.+..+.. ...+.+++|+|++..++++...++. |.+|++..
T Consensus        94 d--g~~l~~~~~~~~~~~i~v~d~~~~----------~~~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~  160 (331)
T 3u4y_A           94 D--DQFAVTVTGLNHPFNMQSYSFLKN----------KFISTIPI-PYDAVGIAISPNGNGLILIDRSSANTVRRFKIDA  160 (331)
T ss_dssp             T--SSEEEECCCSSSSCEEEEEETTTT----------EEEEEEEC-CTTEEEEEECTTSSCEEEEEETTTTEEEEEEECT
T ss_pred             C--CCEEEEecCCCCcccEEEEECCCC----------CeEEEEEC-CCCccceEECCCCCEEEEEecCCCceEEEEEECC
Confidence            9  78888555553   8999999864          33444443 4456899999965557777777788 99999985


Q ss_pred             CCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCc-EEEEEeCCCeEEEEeCCCCCC---ccccC
Q 004468          180 GSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPH-LLLVGGSDAFARLYDRRMLPP---LTSCQ  255 (751)
Q Consensus       180 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~-~l~sgs~D~~IriwD~~~~~~---~~~~~  255 (751)
                      ....              .+.. ..  .+    .....+..++|+|+ ++ +++++..++.|++||+.+.+.   +..+.
T Consensus       161 ~g~~--------------~~~~-~~--~~----~~~~~~~~~~~spd-g~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~  218 (331)
T 3u4y_A          161 DGVL--------------FDTG-QE--FI----SGGTRPFNITFTPD-GNFAFVANLIGNSIGILETQNPENITLLNAVG  218 (331)
T ss_dssp             TCCE--------------EEEE-EE--EE----CSSSSEEEEEECTT-SSEEEEEETTTTEEEEEECSSTTSCEEEEEEE
T ss_pred             CCcE--------------eecC-Cc--cc----cCCCCccceEECCC-CCEEEEEeCCCCeEEEEECCCCcccceeeecc
Confidence            4311              1110 00  00    11234689999996 55 555566789999999987654   21110


Q ss_pred             CCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEe-CCCcEEEEECCCCCcceeeeec------CC---Cce
Q 004468          256 KRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSY-SGEHVYLMDVNHAGGRAMRYTV------GD---ASK  325 (751)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s-~d~~I~lwdl~~~~~~~~~~~~------~~---~~~  325 (751)
                                          .  ...+..++|+|||++|+++. .++.|.+||+.++.........      ..   ...
T Consensus       219 --------------------~--~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (331)
T 3u4y_A          219 --------------------T--NNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGAN  276 (331)
T ss_dssp             --------------------C--SSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCC
T ss_pred             --------------------C--CCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCccccc
Confidence                                0  11367899999999887765 4789999999986532211111      11   113


Q ss_pred             eEEeCCCCCCcccC
Q 004468          326 IMSFTPTLNGLELQ  339 (751)
Q Consensus       326 ~~~~sp~~~~~~~~  339 (751)
                      .++|+|+...+.+.
T Consensus       277 ~~~~spdg~~l~v~  290 (331)
T 3u4y_A          277 QMALNKTETKLFIS  290 (331)
T ss_dssp             CEEECTTSSEEEEE
T ss_pred             ceEECCCCCEEEEe
Confidence            36888887766443

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.69  E-value=3e-15  Score=159.76  Aligned_cols=241  Identities=9%  Similarity=0.056  Sum_probs=168.0

Q ss_pred             cccccEEeccCCCcEEEEEECCCCCEE-EEEeCCCcEEEEeCCCCeEEEEecccCCc--------ceEEEEEecCCCCcE
Q 004468           39 RLSQERELEGHQGCVNAISWNSKGSLL-ISGSDDTHINVWSYSSRKLLHSIETGHSA--------NVFCTKFVPETSDEL  109 (751)
Q Consensus        39 ~~~~~~~L~gH~~~V~~l~~s~dg~~L-aSgs~Dg~I~IWd~~~~~~~~~l~~~h~~--------~V~~v~fsp~s~~~~  109 (751)
                      +.+.+..+.. ...+..++|+|+|++| +++..++.|.+||..+++.+..+..++..        .+.+++|+|+  +++
T Consensus        78 ~~~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d--g~~  154 (353)
T 3vgz_A           78 TLEVTQAIHN-DLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDA--TNT  154 (353)
T ss_dssp             TCCEEEEEEE-SSCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETT--TTE
T ss_pred             CCeEEEEEec-CCCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCC--CCE
Confidence            4445555553 3457889999999955 55566899999999999988877433222        2789999999  676


Q ss_pred             EEEEE--CCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCC
Q 004468          110 VVSGA--GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAG  187 (751)
Q Consensus       110 l~sgs--~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~  187 (751)
                      +++++  .++.|.+||+.+.          +.+..+..+...+..++|+| ++..+++++.++.|.+||+.+++..    
T Consensus       155 l~~~~~~~~~~i~~~d~~~~----------~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~i~~~d~~~~~~~----  219 (353)
T 3vgz_A          155 VYISGIGKESVIWVVDGGNI----------KLKTAIQNTGKMSTGLALDS-EGKRLYTTNADGELITIDTADNKIL----  219 (353)
T ss_dssp             EEEEEESSSCEEEEEETTTT----------EEEEEECCCCTTCCCCEEET-TTTEEEEECTTSEEEEEETTTTEEE----
T ss_pred             EEEEecCCCceEEEEcCCCC----------ceEEEecCCCCccceEEECC-CCCEEEEEcCCCeEEEEECCCCeEE----
Confidence            66555  4889999999864          34555655666788999999 5677778888999999999876521    


Q ss_pred             CCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEE-eCCCeEEEEeCCCCCCccccCCCCCCCCcccc
Q 004468          188 SSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVG-GSDAFARLYDRRMLPPLTSCQKRMSPPPCVNY  266 (751)
Q Consensus       188 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sg-s~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~  266 (751)
                                .....       ...++...+..++|+|+ +++++++ ..++.|.+||+.+.+.+..+..          
T Consensus       220 ----------~~~~~-------~~~~~~~~~~~~~~s~d-g~~l~~~~~~~~~v~~~d~~~~~~~~~~~~----------  271 (353)
T 3vgz_A          220 ----------SRKKL-------LDDGKEHFFINISLDTA-RQRAFITDSKAAEVLVVDTRNGNILAKVAA----------  271 (353)
T ss_dssp             ----------EEEEC-------CCSSSCCCEEEEEEETT-TTEEEEEESSSSEEEEEETTTCCEEEEEEC----------
T ss_pred             ----------EEEEc-------CCCCCCcccceEEECCC-CCEEEEEeCCCCEEEEEECCCCcEEEEEEc----------
Confidence                      11100       01113446788999996 5555544 4569999999987664332210          


Q ss_pred             ccccccccCCccccceEEEEEcCCCCEEEEEe-CCCcEEEEECCCCCcceeeeecCCCceeEEeCCCCCCcccC
Q 004468          267 FCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSY-SGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQ  339 (751)
Q Consensus       267 ~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s-~d~~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~  339 (751)
                               +.    ...++|+|+|++|+++. .++.|.+||+.+++. ...+.....+..++|+|+.+.+.+.
T Consensus       272 ---------~~----~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~-~~~~~~~~~~~~~~~s~dg~~l~v~  331 (353)
T 3vgz_A          272 ---------PE----SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKV-VKTFDTPTHPNSLALSADGKTLYVS  331 (353)
T ss_dssp             ---------SS----CCCEEEETTTTEEEEEETTTTEEEEEETTTTEE-EEEEECCSEEEEEEECTTSCEEEEE
T ss_pred             ---------CC----CceEEECCCCCEEEEEECCCCeEEEEECCCCeE-EEEEecCCCCCeEEEcCCCCEEEEE
Confidence                     11    24589999999777666 589999999988543 3334445567788999987755444

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.69  E-value=1.2e-15  Score=161.55  Aligned_cols=243  Identities=11%  Similarity=0.121  Sum_probs=162.2

Q ss_pred             ccccccchhhhccccccEEecc-CCC-cEEEEEECCCCCEE-EEEeCCCcEEEEeCCCCeEEEEecccC----CcceEEE
Q 004468           27 NHSLQMHSSLVRRLSQERELEG-HQG-CVNAISWNSKGSLL-ISGSDDTHINVWSYSSRKLLHSIETGH----SANVFCT   99 (751)
Q Consensus        27 ~~~l~~~~~~i~~~~~~~~L~g-H~~-~V~~l~~s~dg~~L-aSgs~Dg~I~IWd~~~~~~~~~l~~~h----~~~V~~v   99 (751)
                      +..+.+++.  .+.+.+..+.. +.. .+..++|+|+|++| ++++.++.|.+||+.+++.+..+..++    ...+.++
T Consensus        10 ~~~v~~~d~--~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~   87 (337)
T 1pby_B           10 PDKLVVIDT--EKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGA   87 (337)
T ss_dssp             TTEEEEEET--TTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCE
T ss_pred             CCeEEEEEC--CCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccce
Confidence            345555543  33455555552 222 48899999999765 566678999999999998887774333    2368899


Q ss_pred             EEecCCCCcEEEEEE------------CCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEe
Q 004468          100 KFVPETSDELVVSGA------------GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSAS  167 (751)
Q Consensus       100 ~fsp~s~~~~l~sgs------------~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s  167 (751)
                      +|+|+  +++|++++            .++.|.+||+.+.          +.+..+.. ...+..++|+|+ ++.|+++ 
T Consensus        88 ~~s~d--g~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~~~~~~~~-~~~~~~~~~s~d-g~~l~~~-  152 (337)
T 1pby_B           88 ALSPD--GKTLAIYESPVRLELTHFEVQPTRVALYDAETL----------SRRKAFEA-PRQITMLAWARD-GSKLYGL-  152 (337)
T ss_dssp             EECTT--SSEEEEEEEEEEECSSCEEECCCEEEEEETTTT----------EEEEEEEC-CSSCCCEEECTT-SSCEEEE-
T ss_pred             EECCC--CCEEEEEecccccccccccccCceEEEEECCCC----------cEEEEEeC-CCCcceeEECCC-CCEEEEe-
Confidence            99999  78888776            5799999999853          23444443 456788999994 4555555 


Q ss_pred             CCCcEEEEecCCCCCCCCCCCCC--------Cc----------c------------------------ceEEEecccCce
Q 004468          168 EDGTLRQHDFRQGSSCPPAGSSH--------QE----------C------------------------RNILLDLRCGAK  205 (751)
Q Consensus       168 ~Dg~I~iwDlr~~~~~~~~~~~~--------~~----------~------------------------~~~l~~~~~~~~  205 (751)
                       ++.|.+||+.+++.........        .+          .                        ...++++..+..
T Consensus       153 -~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~  231 (337)
T 1pby_B          153 -GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEM  231 (337)
T ss_dssp             -SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCE
T ss_pred             -CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCc
Confidence             6899999998765321000000        00          0                        123455544433


Q ss_pred             ecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEE
Q 004468          206 RSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHV  285 (751)
Q Consensus       206 ~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v  285 (751)
                      . ......+...+.+++|+|+ +++++++  ++.|++||+.+.+.+..+.                   .+   ..+.++
T Consensus       232 ~-~~~~~~~~~~~~~~~~s~d-g~~l~~~--~~~v~~~d~~~~~~~~~~~-------------------~~---~~~~~~  285 (337)
T 1pby_B          232 A-MREVRIMDVFYFSTAVNPA-KTRAFGA--YNVLESFDLEKNASIKRVP-------------------LP---HSYYSV  285 (337)
T ss_dssp             E-EEEEEECSSCEEEEEECTT-SSEEEEE--ESEEEEEETTTTEEEEEEE-------------------CS---SCCCEE
T ss_pred             e-EeecCCCCCceeeEEECCC-CCEEEEe--CCeEEEEECCCCcCcceec-------------------CC---CceeeE
Confidence            2 1111123345678999995 6777777  7999999998765332210                   00   136789


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEECCCCCc
Q 004468          286 TFSPNGEEVLLSYSGEHVYLMDVNHAGG  313 (751)
Q Consensus       286 ~fspdg~~Ll~~s~d~~I~lwdl~~~~~  313 (751)
                      +|+|+|++|++++.++.|++||+.+++.
T Consensus       286 ~~s~dg~~l~~~~~~~~i~v~d~~~~~~  313 (337)
T 1pby_B          286 NVSTDGSTVWLGGALGDLAAYDAETLEK  313 (337)
T ss_dssp             EECTTSCEEEEESBSSEEEEEETTTCCE
T ss_pred             EECCCCCEEEEEcCCCcEEEEECcCCcE
Confidence            9999999999998999999999998653

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.68  E-value=2e-15  Score=178.20  Aligned_cols=220  Identities=10%  Similarity=0.055  Sum_probs=135.9

Q ss_pred             EEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCc---ceEEEEEecCCCCcEEEEEEC---------CCcEEEE
Q 004468           55 AISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSA---NVFCTKFVPETSDELVVSGAG---------DAEVRLF  122 (751)
Q Consensus        55 ~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~---~V~~v~fsp~s~~~~l~sgs~---------Dg~V~vw  122 (751)
                      .++|+|+|+++++ +.|++|++||+.+++....+ .+|..   .|.+++|+|+  |++|++++.         |+.|++|
T Consensus        20 ~~~~s~dg~~~~~-~~d~~i~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~SpD--g~~la~~~~~~~~~~~s~~~~i~~~   95 (719)
T 1z68_A           20 FPNWISGQEYLHQ-SADNNIVLYNIETGQSYTIL-SNRTMKSVNASNYGLSPD--RQFVYLESDYSKLWRYSYTATYYIY   95 (719)
T ss_dssp             CCEESSSSEEEEE-CTTSCEEEEESSSCCEEEEE-CHHHHHTTTCSEEEECTT--SSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred             ccEECCCCeEEEE-cCCCCEEEEEcCCCcEEEEE-ccccccccceeeEEECCC--CCeEEEEecCceeEEeecceEEEEE
Confidence            6799999965555 46999999999998877666 45543   4999999999  899998876         7899999


Q ss_pred             ECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEeccc
Q 004468          123 NLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRC  202 (751)
Q Consensus       123 d~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~  202 (751)
                      |+.++....        ...+   ...+..++|+| +++.|+.+. |+.|++||+.+++.......+..   ..+++   
T Consensus        96 d~~~g~~~~--------~~~l---~~~~~~~~~SP-DG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~---~~v~~---  156 (719)
T 1z68_A           96 DLSNGEFVR--------GNEL---PRPIQYLCWSP-VGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRE---NKIFN---  156 (719)
T ss_dssp             ETTTTEECC--------SSCC---CSSBCCEEECS-STTCEEEEE-TTEEEEESSTTSCCEECCCCCBT---TTEEE---
T ss_pred             ECCCCcccc--------ceec---CcccccceECC-CCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCc---CCeEc---
Confidence            998642100        0112   24688999999 567777765 78999999988753211100000   00000   


Q ss_pred             CceecccCCCCCccceEEEEEeCCCCcEEEEEeCCC----------------------------------eEEEEeCCCC
Q 004468          203 GAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDA----------------------------------FARLYDRRML  248 (751)
Q Consensus       203 ~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~----------------------------------~IriwD~~~~  248 (751)
                      |....+... .......+++|+|+ +++|++++.|.                                  .|++||+.+.
T Consensus       157 g~~~~v~~e-e~~~~~~~~~wSPD-G~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~  234 (719)
T 1z68_A          157 GIPDWVYEE-EMLATKYALWWSPN-GKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYP  234 (719)
T ss_dssp             SSCCHHHHH-HTTCSSCCEEECTT-SSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCH
T ss_pred             ccccceeee-ecccCcccEEECCC-CCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCC
Confidence            000000000 00011258999994 78888887652                                  7788888754


Q ss_pred             CCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCC----CcEEEEE----CCCCC
Q 004468          249 PPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG----EHVYLMD----VNHAG  312 (751)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d----~~I~lwd----l~~~~  312 (751)
                      +.....          +...+..+  .++.. .+..++||||++.+++....    ..|++||    +.++.
T Consensus       235 ~~~~~~----------~~~~~~~~--~~~~~-~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~  293 (719)
T 1z68_A          235 AYVGPQ----------EVPVPAMI--ASSDY-YFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWD  293 (719)
T ss_dssp             HHHCCE----------ECCCCHHH--HTSCE-EEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEE
T ss_pred             Ccccee----------EccCCccC--CCCcc-eEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCc
Confidence            321000          00000001  12222 48999999998776664433    2488999    76643

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.65  E-value=8.4e-15  Score=156.50  Aligned_cols=247  Identities=11%  Similarity=0.075  Sum_probs=156.3

Q ss_pred             ccCCCcEEEEEECCCCCEEEEEeC---CCcEEEEeCCCCe--EEEEecccCCcceEEEEEecCCCCcEEEEEE-CCCcEE
Q 004468           47 EGHQGCVNAISWNSKGSLLISGSD---DTHINVWSYSSRK--LLHSIETGHSANVFCTKFVPETSDELVVSGA-GDAEVR  120 (751)
Q Consensus        47 ~gH~~~V~~l~~s~dg~~LaSgs~---Dg~I~IWd~~~~~--~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs-~Dg~V~  120 (751)
                      ..+...+..++|+|+|+ |++++.   ++.|.+|++.++.  .+..+ ..+...+..++|+|+  +++|++++ .++.|.
T Consensus        36 ~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~-~~~~~~p~~~a~spd--g~~l~~~~~~~~~v~  111 (347)
T 3hfq_A           36 LAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTV-VAPGTPPAYVAVDEA--RQLVYSANYHKGTAE  111 (347)
T ss_dssp             EEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEE-EEESCCCSEEEEETT--TTEEEEEETTTTEEE
T ss_pred             eeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeee-ecCCCCCEEEEECCC--CCEEEEEeCCCCEEE
Confidence            44567788999999999 554443   6899999997665  33343 457788999999999  78888777 789999


Q ss_pred             EEECCCCCCCCCCCCCCCCceeecc---------cCCceeEEEEecCCCCEEEEEeCCCcEEEEecCC-CCCCCCCCCCC
Q 004468          121 LFNLSRFSGRGLDDNAITPSALYQC---------HTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQ-GSSCPPAGSSH  190 (751)
Q Consensus       121 vwd~~~~~~~~~~~~~~~~~~~~~~---------h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~-~~~~~~~~~~~  190 (751)
                      +|++... +..      ..+..+..         +...+.+++|+|++ +++++...++.|++||+.. ++.        
T Consensus       112 v~~~~~~-g~~------~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg-~l~v~~~~~~~v~~~~~~~~g~~--------  175 (347)
T 3hfq_A          112 VMKIAAD-GAL------TLTDTVQHSGHGPRPEQDGSHIHYTDLTPDN-RLAVIDLGSDKVYVYNVSDAGQL--------  175 (347)
T ss_dssp             EEEECTT-SCE------EEEEEEECCCCCSSTTCSSCCEEEEEECTTS-CEEEEETTTTEEEEEEECTTSCE--------
T ss_pred             EEEeCCC-CCe------eecceeecCCCCCCccccCCCceEEEECCCC-cEEEEeCCCCEEEEEEECCCCcE--------
Confidence            9999631 110      11222211         22358899999954 5887888899999999983 220        


Q ss_pred             CccceEEEecccCceecccCCCCCccceEEEEEeCCCCc-EEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccc
Q 004468          191 QECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPH-LLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCP  269 (751)
Q Consensus       191 ~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~-~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~  269 (751)
                          ..+...        ...  ....+..++|+|+ ++ +++++..++.|++|++........         .+.....
T Consensus       176 ----~~~~~~--------~~~--~g~~p~~~~~spd-g~~l~v~~~~~~~v~v~~~~~~~g~~~---------~~~~~~~  231 (347)
T 3hfq_A          176 ----SEQSVL--------TME--AGFGPRHLVFSPD-GQYAFLAGELSSQIASLKYDTQTGAFT---------QLGIVKT  231 (347)
T ss_dssp             ----EEEEEE--------ECC--TTCCEEEEEECTT-SSEEEEEETTTTEEEEEEEETTTTEEE---------EEEEEES
T ss_pred             ----EEeeeE--------EcC--CCCCCceEEECCC-CCEEEEEeCCCCEEEEEEecCCCCceE---------Eeeeeee
Confidence                001000        000  1124667999996 56 555567789999999874210000         0000000


Q ss_pred             cccccCCccccceEEEEEcCCCCEEEE-EeCCCcEEEEECCCCCccee---eeecCCCceeEEeCCCCCCcccC
Q 004468          270 MHLSEHGRSSLHLTHVTFSPNGEEVLL-SYSGEHVYLMDVNHAGGRAM---RYTVGDASKIMSFTPTLNGLELQ  339 (751)
Q Consensus       270 ~~~~~~g~~~~~vt~v~fspdg~~Ll~-~s~d~~I~lwdl~~~~~~~~---~~~~~~~~~~~~~sp~~~~~~~~  339 (751)
                        ..........+..++|+|||++|++ +..++.|.+|++...+....   ....+..+..++|+|+.+.+...
T Consensus       232 --~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~  303 (347)
T 3hfq_A          232 --IPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVV  303 (347)
T ss_dssp             --SCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEE
T ss_pred             --cCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEE
Confidence              0000000124889999999998855 45689999999974321111   12224467789999988766544

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.65  E-value=4.4e-14  Score=151.81  Aligned_cols=212  Identities=13%  Similarity=0.111  Sum_probs=127.4

Q ss_pred             CCEEEEEe----CCCcEEEEeC--CCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECC----CcEEEEECCCCCCCC
Q 004468           62 GSLLISGS----DDTHINVWSY--SSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD----AEVRLFNLSRFSGRG  131 (751)
Q Consensus        62 g~~LaSgs----~Dg~I~IWd~--~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~D----g~V~vwd~~~~~~~~  131 (751)
                      ..++..|+    .++.|.+|.+  .+++....... +...+..++|+|+  +++|++++.+    +.|.+|++....+..
T Consensus        13 ~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~-~~~~p~~l~~spd--g~~l~~~~~~~~~~~~v~~~~~~~~~g~~   89 (361)
T 3scy_A           13 ELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDA-EVANPSYLIPSAD--GKFVYSVNEFSKDQAAVSAFAFDKEKGTL   89 (361)
T ss_dssp             EEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEE-ECSCCCSEEECTT--SSEEEEEECCSSTTCEEEEEEEETTTTEE
T ss_pred             ceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecc-cCCCCceEEECCC--CCEEEEEEccCCCCCcEEEEEEeCCCCcE
Confidence            34555553    4678999965  45654433322 7788899999999  8889988876    799999987532211


Q ss_pred             CCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCC
Q 004468          132 LDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADP  211 (751)
Q Consensus       132 ~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  211 (751)
                            ..+.....+...+..+++  ++..++++...+++|.+|++.........       ...+.....+.    ...
T Consensus        90 ------~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~-------~~~~~~~g~~~----~~~  150 (361)
T 3scy_A           90 ------HLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPA-------SDVIEFKGSGP----DKE  150 (361)
T ss_dssp             ------EEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSC-------SEEEECCCCCS----CTT
T ss_pred             ------EEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCccc-------ceeEEccCCCC----Ccc
Confidence                  223344445566777777  34444544457899999999764322110       00110000000    000


Q ss_pred             CCCccceEEEEEeCCCCcEE-EEEeCCCeEEEEeCCCCCC------ccccCCCCCCCCccccccccccccCCccccceEE
Q 004468          212 PKQTLSLKSCDISSTRPHLL-LVGGSDAFARLYDRRMLPP------LTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTH  284 (751)
Q Consensus       212 ~~~~~~v~~i~~sp~~~~~l-~sgs~D~~IriwD~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~  284 (751)
                      ......+.+++|+|+ ++++ +++..++.|++|++.....      +....       .....   ..    .....+..
T Consensus       151 ~~~~~~~~~~~~spd-g~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~-------~~~~~---~~----~~~~~~~~  215 (361)
T 3scy_A          151 RQTMPHLHCVRITPD-GKYLLADDLGTDQIHKFNINPNANADNKEKFLTKG-------TPEAF---KV----APGSGPRH  215 (361)
T ss_dssp             TCSSCCEEEEEECTT-SSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEE-------EEEEE---EC----CTTCCEEE
T ss_pred             ccCCCcceEEEECCC-CCEEEEEeCCCCEEEEEEEcCCCCcccccceeecc-------cccce---ec----CCCCCCeE
Confidence            112345788999995 6655 4455689999999875331      10000       00000   00    11124788


Q ss_pred             EEEcCCCCEEEEEe-CCCcEEEEECCC
Q 004468          285 VTFSPNGEEVLLSY-SGEHVYLMDVNH  310 (751)
Q Consensus       285 v~fspdg~~Ll~~s-~d~~I~lwdl~~  310 (751)
                      ++|+|||++|+++. .++.|++||+.+
T Consensus       216 ~~~spdg~~l~v~~~~~~~v~v~~~~~  242 (361)
T 3scy_A          216 LIFNSDGKFAYLINEIGGTVIAFRYAD  242 (361)
T ss_dssp             EEECTTSSEEEEEETTTCEEEEEEEET
T ss_pred             EEEcCCCCEEEEEcCCCCeEEEEEecC
Confidence            99999999888777 589999999875

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.64  E-value=9.7e-15  Score=156.01  Aligned_cols=239  Identities=10%  Similarity=0.117  Sum_probs=151.4

Q ss_pred             cccccchhhhccccccEEeccCCCcEEEEEECCCCCEEEEEe-CCCcEEEEeCC-CC--eEEEEecc-c-------CCcc
Q 004468           28 HSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGS-DDTHINVWSYS-SR--KLLHSIET-G-------HSAN   95 (751)
Q Consensus        28 ~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs-~Dg~I~IWd~~-~~--~~~~~l~~-~-------h~~~   95 (751)
                      ..+.+|+....+++.+..+..|...+..++|+|+|++|++++ .++.|.+|++. ++  ..+..+.. +       +...
T Consensus        63 ~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~  142 (347)
T 3hfq_A           63 GGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSH  142 (347)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCC
T ss_pred             ceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCC
Confidence            445555543344556666677888999999999999998888 78999999985 33  33333311 1       2235


Q ss_pred             eEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeeccc-CCceeEEEEecCCCCEEEEEeCCCcEEE
Q 004468           96 VFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCH-TRRVKKLAVEVGNPHVVWSASEDGTLRQ  174 (751)
Q Consensus        96 V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~l~~sp~~~~~l~s~s~Dg~I~i  174 (751)
                      +.+++|+|+  ++++++...++.|++|++... +..      .....+..+ ...+..++|+|++..+++++..++.|.+
T Consensus       143 ~~~~~~spd--g~l~v~~~~~~~v~~~~~~~~-g~~------~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v  213 (347)
T 3hfq_A          143 IHYTDLTPD--NRLAVIDLGSDKVYVYNVSDA-GQL------SEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIAS  213 (347)
T ss_dssp             EEEEEECTT--SCEEEEETTTTEEEEEEECTT-SCE------EEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred             ceEEEECCC--CcEEEEeCCCCEEEEEEECCC-CcE------EEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEE
Confidence            889999999  677777778899999999831 111      112222222 3367889999954336666778899999


Q ss_pred             EecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEE-EEEeCCCeEEEEeCCCCCCccc
Q 004468          175 HDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLL-LVGGSDAFARLYDRRMLPPLTS  253 (751)
Q Consensus       175 wDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l-~sgs~D~~IriwD~~~~~~~~~  253 (751)
                      |++......          ...+.....     ..........+..++|+|+ +++| ++...++.|.+||+....... 
T Consensus       214 ~~~~~~~g~----------~~~~~~~~~-----~~~~~~~~~~~~~i~~spd-G~~l~v~~~~~~~v~v~~~~~~g~~~-  276 (347)
T 3hfq_A          214 LKYDTQTGA----------FTQLGIVKT-----IPADYTAHNGAAAIRLSHD-GHFLYVSNRGYNTLAVFAVTADGHLT-  276 (347)
T ss_dssp             EEEETTTTE----------EEEEEEEES-----SCTTCCSCCEEEEEEECTT-SCEEEEEEETTTEEEEEEECGGGCEE-
T ss_pred             EEecCCCCc----------eEEeeeeee-----cCCCCCCCCcceeEEECCC-CCEEEEEeCCCCEEEEEEECCCCcEE-
Confidence            998752100          001110000     0000011245889999996 6655 666779999999986311100 


Q ss_pred             cCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeC-CCcEEEEECC
Q 004468          254 CQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GEHVYLMDVN  309 (751)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~-d~~I~lwdl~  309 (751)
                               .+..+ +      .+ ...+..++|+|||++|+++.. ++.|.+|+++
T Consensus       277 ---------~~~~~-~------~~-~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d  316 (347)
T 3hfq_A          277 ---------LIQQI-S------TE-GDFPRDFDLDPTEAFVVVVNQNTDNATLYARD  316 (347)
T ss_dssp             ---------EEEEE-E------CS-SSCCCEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             ---------EeEEE-e------cC-CCCcCeEEECCCCCEEEEEEcCCCcEEEEEEe
Confidence                     01111 0      01 113678999999999988876 5899999554

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.64  E-value=2.4e-15  Score=177.48  Aligned_cols=276  Identities=8%  Similarity=0.025  Sum_probs=168.4

Q ss_pred             ccccccchhhhccccccEEeccCCC---cEEEEEECCCCCEEEEEeCC---------CcEEEEeCCCCeEEEEe--cccC
Q 004468           27 NHSLQMHSSLVRRLSQERELEGHQG---CVNAISWNSKGSLLISGSDD---------THINVWSYSSRKLLHSI--ETGH   92 (751)
Q Consensus        27 ~~~l~~~~~~i~~~~~~~~L~gH~~---~V~~l~~s~dg~~LaSgs~D---------g~I~IWd~~~~~~~~~l--~~~h   92 (751)
                      +..+.+|+.  .+.+....+.+|..   .|.+++|||||++||+++.+         +.|.|||+.+++. ..+  ..+|
T Consensus        36 dg~i~~~d~--~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~  112 (723)
T 1xfd_A           36 KGTVRLWNV--ETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVS  112 (723)
T ss_dssp             SSCEEEBCG--GGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCC
T ss_pred             CCCEEEEEC--CCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce-EeccCCccc
Confidence            445666654  34455667777765   49999999999999999875         7788999998865 233  1345


Q ss_pred             CcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCC------------------ceeEEE
Q 004468           93 SANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTR------------------RVKKLA  154 (751)
Q Consensus        93 ~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~------------------~V~~l~  154 (751)
                      ...+.+++|+|+  |+.|+.++. +.|++||+..+.          .......+..                  .+.+++
T Consensus       113 ~~~~~~~~~SPd--G~~la~~~~-~~i~~~~~~~g~----------~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~  179 (723)
T 1xfd_A          113 NAKLQYAGWGPK--GQQLIFIFE-NNIYYCAHVGKQ----------AIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHW  179 (723)
T ss_dssp             SCCCSBCCBCSS--TTCEEEEET-TEEEEESSSSSC----------CEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEE
T ss_pred             cccccccEECCC--CCEEEEEEC-CeEEEEECCCCc----------eEEEecCCCCCceECcccceeEEEEeccCcceEE
Confidence            556999999999  899998886 799999998642          2333333332                  237899


Q ss_pred             EecCCCCEEEEEeCC-CcEEEEecCCCCCCC----------CCCCCCCccceEEEecccCce-ecccCC---CCCccceE
Q 004468          155 VEVGNPHVVWSASED-GTLRQHDFRQGSSCP----------PAGSSHQECRNILLDLRCGAK-RSLADP---PKQTLSLK  219 (751)
Q Consensus       155 ~sp~~~~~l~s~s~D-g~I~iwDlr~~~~~~----------~~~~~~~~~~~~l~~~~~~~~-~~~~~~---~~~~~~v~  219 (751)
                      |+| +++.|++++.| +.+.+|++.......          ..+.........++++..+.. ..+...   ..+...+.
T Consensus       180 ~Sp-Dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~  258 (723)
T 1xfd_A          180 WSP-DGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYIT  258 (723)
T ss_dssp             ECT-TSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEE
T ss_pred             ECC-CCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeE
Confidence            999 56777777654 456666654221100          000001112344555555442 222111   01256789


Q ss_pred             EEEEeCCCCcEEEEEeC----CCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccce----EEEEEcCCC
Q 004468          220 SCDISSTRPHLLLVGGS----DAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHL----THVTFSPNG  291 (751)
Q Consensus       220 ~i~~sp~~~~~l~sgs~----D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v----t~v~fspdg  291 (751)
                      +++|+|+ +++|++.+.    +..|++||+.+++....+.             .       +....+    ..++|+|||
T Consensus       259 ~~~~SpD-g~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~-------------~-------~~~~~~~~~~~~~~~spdg  317 (723)
T 1xfd_A          259 MVKWATS-TKVAVTWLNRAQNVSILTLCDATTGVCTKKHE-------------D-------ESEAWLHRQNEEPVFSKDG  317 (723)
T ss_dssp             EEEESSS-SEEEEEEEETTSCEEEEEEEETTTCCEEEEEE-------------E-------ECSSCCCCCCCCCEECTTS
T ss_pred             EEEEeCC-CeEEEEEEcCCCCeEEEEEEeCCCCcceEEEE-------------e-------ccCCEEeccCCCceEcCCC
Confidence            9999995 677766653    3689999998765321110             0       000012    367999999


Q ss_pred             CEEEEE--eCCC------cEEEEEC-CCCCc--ceeeee-cCCCceeEEeCCCCCCcccCC
Q 004468          292 EEVLLS--YSGE------HVYLMDV-NHAGG--RAMRYT-VGDASKIMSFTPTLNGLELQP  340 (751)
Q Consensus       292 ~~Ll~~--s~d~------~I~lwdl-~~~~~--~~~~~~-~~~~~~~~~~sp~~~~~~~~~  340 (751)
                      +.|+..  ..++      .|++||+ .++..  ...... .......++|+|+.+.+.+..
T Consensus       318 ~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~  378 (723)
T 1xfd_A          318 RKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLS  378 (723)
T ss_dssp             CSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEE
T ss_pred             CeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEE
Confidence            987754  4566      5777883 44320  222221 122233468999988776543

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.64  E-value=1.9e-15  Score=178.97  Aligned_cols=230  Identities=10%  Similarity=0.004  Sum_probs=152.7

Q ss_pred             cEEEEEECCCCCEEEEEeCCCcEEEEeCCCCe--EEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCC
Q 004468           52 CVNAISWNSKGSLLISGSDDTHINVWSYSSRK--LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSG  129 (751)
Q Consensus        52 ~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~--~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~  129 (751)
                      .|.+++|||||++|++++. +.|.+||+.++.  .+..+ ..|...+.+++|+|+  |++|+.++ ++.|++||+..+. 
T Consensus       110 ~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l-~~~~~~~~~~~~SPD--G~~la~~~-~~~i~~~d~~~g~-  183 (741)
T 2ecf_A          110 GIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQL-THGEGFATDAKLSPK--GGFVSFIR-GRNLWVIDLASGR-  183 (741)
T ss_dssp             ESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBC-CCSSSCEEEEEECTT--SSEEEEEE-TTEEEEEETTTTE-
T ss_pred             CcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEc-ccCCcccccccCCCC--CCEEEEEe-CCcEEEEecCCCC-
Confidence            3889999999999999987 899999998872  34455 678889999999999  89999887 4699999998642 


Q ss_pred             CCCCCCCCCCceeecccCC----------------ceeEEEEecCCCCEEEEEeCCC-----------------------
Q 004468          130 RGLDDNAITPSALYQCHTR----------------RVKKLAVEVGNPHVVWSASEDG-----------------------  170 (751)
Q Consensus       130 ~~~~~~~~~~~~~~~~h~~----------------~V~~l~~sp~~~~~l~s~s~Dg-----------------------  170 (751)
                               .......+..                .+..++|+| +++.|++++.|+                       
T Consensus       184 ---------~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~Sp-Dg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~  253 (741)
T 2ecf_A          184 ---------QMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAP-DDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRY  253 (741)
T ss_dssp             ---------EEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECT-TSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEEC
T ss_pred             ---------EEEeccCCccceeccccceeeeeccccccceEECC-CCCEEEEEEEcCCCCceEecCCCCCCcccceEeec
Confidence                     1222222222                257899999 567777776665                       


Q ss_pred             ----------cEEEEecCC-CCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeC---
Q 004468          171 ----------TLRQHDFRQ-GSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGS---  236 (751)
Q Consensus       171 ----------~I~iwDlr~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~---  236 (751)
                                .|++||+.+ ++                       ...+.....+...+..++| |+ +++|++++.   
T Consensus       254 ~~~g~~~~~~~l~~~d~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~-pD-g~~l~~~~~~~~  308 (741)
T 2ecf_A          254 PAAGDANVQVKLGVISPAEQAQ-----------------------TQWIDLGKEQDIYLARVNW-RD-PQHLSFQRQSRD  308 (741)
T ss_dssp             CBTTSCCCEEEEEEECSSTTCC-----------------------CEEECCCSCSSEEEEEEEE-EE-TTEEEEEEEETT
T ss_pred             CCCCCCCCeeEEEEEECCCCCc-----------------------eEEecCCCCcceEEEEEEe-CC-CCEEEEEEeccc
Confidence                      555566554 43                       2112212235678899999 95 677776653   


Q ss_pred             --CCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcc
Q 004468          237 --DAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGR  314 (751)
Q Consensus       237 --D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~  314 (751)
                        +..|++||+.+++....+.              .+..  +... .+..++|+|||+++++++.++.++||.++..+..
T Consensus       309 ~~~~~i~~~d~~~g~~~~~~~--------------~~~~--~~~~-~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~~  371 (741)
T 2ecf_A          309 QKKLDLVEVTLASNQQRVLAH--------------ETSP--TWVP-LHNSLRFLDDGSILWSSERTGFQHLYRIDSKGKA  371 (741)
T ss_dssp             SSEEEEEEEETTTCCEEEEEE--------------EECS--SCCC-CCSCCEECTTSCEEEEECTTSSCEEEEECSSSCE
T ss_pred             CCeEEEEEEECCCCceEEEEE--------------cCCC--CcCC-cCCceEECCCCeEEEEecCCCccEEEEEcCCCCe
Confidence              6789999998765322110              0000  0000 2457899999998888888988888876632222


Q ss_pred             eeeeecCCCceeE-EeCCCCCCcccC
Q 004468          315 AMRYTVGDASKIM-SFTPTLNGLELQ  339 (751)
Q Consensus       315 ~~~~~~~~~~~~~-~~sp~~~~~~~~  339 (751)
                      .....+...+..+ .|+|+.+.+.+.
T Consensus       372 ~~l~~~~~~v~~~~~~s~dg~~l~~~  397 (741)
T 2ecf_A          372 AALTHGNWSVDELLAVDEKAGLAYFR  397 (741)
T ss_dssp             EESCCSSSCEEEEEEEETTTTEEEEE
T ss_pred             eeeeecceEEEeEeEEeCCCCEEEEE
Confidence            2222233333343 589988766544

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.61  E-value=2.1e-14  Score=152.74  Aligned_cols=245  Identities=10%  Similarity=0.060  Sum_probs=157.8

Q ss_pred             ccccccchhhhccccccEEeccCC-CcEEEEEECCCCCEE-EEEeCCCcEEEEeCCCCeEEEEecccC-----CcceEEE
Q 004468           27 NHSLQMHSSLVRRLSQERELEGHQ-GCVNAISWNSKGSLL-ISGSDDTHINVWSYSSRKLLHSIETGH-----SANVFCT   99 (751)
Q Consensus        27 ~~~l~~~~~~i~~~~~~~~L~gH~-~~V~~l~~s~dg~~L-aSgs~Dg~I~IWd~~~~~~~~~l~~~h-----~~~V~~v   99 (751)
                      +..+.+++.  .+.+.++++..+. ..+..++|+|+|+++ +++..++.|.+||+.+++.+..+..++     ...+.++
T Consensus        20 ~~~v~~~d~--~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~   97 (349)
T 1jmx_B           20 PNNLHVVDV--ASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSF   97 (349)
T ss_dssp             TTEEEEEET--TTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCE
T ss_pred             CCeEEEEEC--CCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccce
Confidence            456666653  3445566666443 257899999999865 556678999999999998887774333     3448899


Q ss_pred             EEecCCCCcEEEEEECC------------CcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEe
Q 004468          100 KFVPETSDELVVSGAGD------------AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSAS  167 (751)
Q Consensus       100 ~fsp~s~~~~l~sgs~D------------g~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s  167 (751)
                      +|+|+  +++|++++.+            +.|.+||+.++...       +.+..+. +...+.+++|+|+ ++++ .++
T Consensus        98 ~~spd--g~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~-------~~~~~~~-~~~~~~~~~~s~d-g~l~-~~~  165 (349)
T 1jmx_B           98 AISPD--GKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEA-------KPVRTFP-MPRQVYLMRAADD-GSLY-VAG  165 (349)
T ss_dssp             EECTT--SSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGB-------CCSEEEE-CCSSCCCEEECTT-SCEE-EES
T ss_pred             EECCC--CCEEEEEcccccccccccccCCCeEEEEECCCcccc-------ceeeecc-CCCcccceeECCC-CcEE-Ecc
Confidence            99999  7888888765            89999999853211       2233443 3346889999994 4554 444


Q ss_pred             CCCcEEEEecCCCCCCCCCCCCC-----------------Ccc---------------------------ceEEEecccC
Q 004468          168 EDGTLRQHDFRQGSSCPPAGSSH-----------------QEC---------------------------RNILLDLRCG  203 (751)
Q Consensus       168 ~Dg~I~iwDlr~~~~~~~~~~~~-----------------~~~---------------------------~~~l~~~~~~  203 (751)
                      .  .|.+||+.+++.........                 ...                           ..+.++...+
T Consensus       166 ~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~  243 (349)
T 1jmx_B          166 P--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTG  243 (349)
T ss_dssp             S--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTC
T ss_pred             C--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCC
Confidence            3  49999998876432111000                 000                           0000122222


Q ss_pred             ceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceE
Q 004468          204 AKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLT  283 (751)
Q Consensus       204 ~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt  283 (751)
                      ....+.. ......+.+++|+|.++++++++  ++.|.+||+.+.+.+..+.                   .++   .+.
T Consensus       244 ~~~~~~~-~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~-------------------~~~---~~~  298 (349)
T 1jmx_B          244 KTHTQEF-ADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAAN-------------------LDH---TYY  298 (349)
T ss_dssp             CEEEEEE-EECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEE-------------------CSS---CCC
T ss_pred             cEEeccc-ccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEc-------------------CCC---Ccc
Confidence            2111111 11223567889999336777777  8899999998765332210                   011   267


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECCCCC
Q 004468          284 HVTFSPNGEEVLLSYSGEHVYLMDVNHAG  312 (751)
Q Consensus       284 ~v~fspdg~~Ll~~s~d~~I~lwdl~~~~  312 (751)
                      +++|+|+|++|++++.++.|++||+.+++
T Consensus       299 ~~~~s~dg~~l~~~~~~~~v~v~d~~~~~  327 (349)
T 1jmx_B          299 CVAFDKKGDKLYLGGTFNDLAVFNPDTLE  327 (349)
T ss_dssp             EEEECSSSSCEEEESBSSEEEEEETTTTE
T ss_pred             ceEECCCCCEEEEecCCCeEEEEeccccc
Confidence            89999999999998889999999998854

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.58  E-value=5.3e-14  Score=149.56  Aligned_cols=241  Identities=11%  Similarity=0.045  Sum_probs=156.3

Q ss_pred             EEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcE-EEEEECCCcEEEEECCCCCCCCCC
Q 004468           55 AISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDEL-VVSGAGDAEVRLFNLSRFSGRGLD  133 (751)
Q Consensus        55 ~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~-l~sgs~Dg~V~vwd~~~~~~~~~~  133 (751)
                      .+++++++.++++++.+++|.+||+.+++.+..+..+....+..++|+|+  +++ ++++..++.|.+||+.++      
T Consensus         4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~d--g~~~~v~~~~~~~i~~~d~~t~------   75 (349)
T 1jmx_B            4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPD--NRTAYVLNNHYGDIYGIDLDTC------   75 (349)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTT--SSEEEEEETTTTEEEEEETTTT------
T ss_pred             cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCC--CCEEEEEeCCCCcEEEEeCCCC------
Confidence            45688899999999999999999999999888874333336889999999  665 456667899999999864      


Q ss_pred             CCCCCCceeeccc------CCceeEEEEecCCCCEEEEEeCC------------CcEEEEecCCCCCCCCCCCCCCccce
Q 004468          134 DNAITPSALYQCH------TRRVKKLAVEVGNPHVVWSASED------------GTLRQHDFRQGSSCPPAGSSHQECRN  195 (751)
Q Consensus       134 ~~~~~~~~~~~~h------~~~V~~l~~sp~~~~~l~s~s~D------------g~I~iwDlr~~~~~~~~~~~~~~~~~  195 (751)
                          +.+..+..+      ...+..++|+| +++.+++++.+            +.|.+||+.+++.....        .
T Consensus        76 ----~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~--------~  142 (349)
T 1jmx_B           76 ----KNTFHANLSSVPGEVGRSMYSFAISP-DGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPV--------R  142 (349)
T ss_dssp             ----EEEEEEESCCSTTEEEECSSCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCS--------E
T ss_pred             ----cEEEEEEcccccccccccccceEECC-CCCEEEEEcccccccccccccCCCeEEEEECCCcccccee--------e
Confidence                223333322      23378899999 56777777755            89999999875421000        0


Q ss_pred             EEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCC-CC-----Cccc----
Q 004468          196 ILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMS-PP-----PCVN----  265 (751)
Q Consensus       196 ~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~-~~-----~~~~----  265 (751)
                      . ..              +...+.+++|+|+ ++ +++++.  .|++||+.+++.+..+..... .+     ....    
T Consensus       143 ~-~~--------------~~~~~~~~~~s~d-g~-l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (349)
T 1jmx_B          143 T-FP--------------MPRQVYLMRAADD-GS-LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPH  203 (349)
T ss_dssp             E-EE--------------CCSSCCCEEECTT-SC-EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCC
T ss_pred             e-cc--------------CCCcccceeECCC-Cc-EEEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecC
Confidence            0 00              1224778899996 56 555544  499999988775543322110 00     0000    


Q ss_pred             -----cc-cccccc----------------------cC-C--------ccccceEEEEEcC-CCCEEEEEeCCCcEEEEE
Q 004468          266 -----YF-CPMHLS----------------------EH-G--------RSSLHLTHVTFSP-NGEEVLLSYSGEHVYLMD  307 (751)
Q Consensus       266 -----~~-~~~~~~----------------------~~-g--------~~~~~vt~v~fsp-dg~~Ll~~s~d~~I~lwd  307 (751)
                           .+ .|....                      .. +        .....+..++|+| +|++|+++  ++.|++||
T Consensus       204 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d  281 (349)
T 1jmx_B          204 QSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYD  281 (349)
T ss_dssp             CCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEE
T ss_pred             CCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEE
Confidence                 00 000000                      00 0        0011367889999 99999988  88999999


Q ss_pred             CCCCCcceeeeecCCCceeEEeCCCCCCccc
Q 004468          308 VNHAGGRAMRYTVGDASKIMSFTPTLNGLEL  338 (751)
Q Consensus       308 l~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~  338 (751)
                      +.+++. ......+..+..++|+|+.+.+..
T Consensus       282 ~~~~~~-~~~~~~~~~~~~~~~s~dg~~l~~  311 (349)
T 1jmx_B          282 LKQRKL-IKAANLDHTYYCVAFDKKGDKLYL  311 (349)
T ss_dssp             TTTTEE-EEEEECSSCCCEEEECSSSSCEEE
T ss_pred             CccCeE-EEEEcCCCCccceEECCCCCEEEE
Confidence            998543 233334556778999998776655

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.57  E-value=6.8e-13  Score=142.49  Aligned_cols=270  Identities=8%  Similarity=0.039  Sum_probs=160.6

Q ss_pred             cccccchhhh--ccccccEEeccCCCcEEEEEECCCCCEEEEEeCC----CcEEEEeCCC--CeE--EEEecccCCcceE
Q 004468           28 HSLQMHSSLV--RRLSQERELEGHQGCVNAISWNSKGSLLISGSDD----THINVWSYSS--RKL--LHSIETGHSANVF   97 (751)
Q Consensus        28 ~~l~~~~~~i--~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~D----g~I~IWd~~~--~~~--~~~l~~~h~~~V~   97 (751)
                      ..+.++....  .+++.+..+  |...+..++|+|+|++|++++.+    +.|.+|++..  +..  +..+ ..+.....
T Consensus        27 ~~i~~~~~d~~~g~~~~~~~~--~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~-~~~~~~p~  103 (361)
T 3scy_A           27 KGIYTFRFNEETGESLPLSDA--EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQ-KTMGADPC  103 (361)
T ss_dssp             CEEEEEEEETTTCCEEEEEEE--ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEE-ECSSSCEE
T ss_pred             CCEEEEEEeCCCCCEEEeecc--cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEe-ccCCCCcE
Confidence            3455554332  333444444  77888899999999999999886    7999998764  433  3333 33556677


Q ss_pred             EEEEecCCCCcEEEEEE-CCCcEEEEECCCCCCCCCCCCCCCCcee----------ecccCCceeEEEEecCCCCEEEEE
Q 004468           98 CTKFVPETSDELVVSGA-GDAEVRLFNLSRFSGRGLDDNAITPSAL----------YQCHTRRVKKLAVEVGNPHVVWSA  166 (751)
Q Consensus        98 ~v~fsp~s~~~~l~sgs-~Dg~V~vwd~~~~~~~~~~~~~~~~~~~----------~~~h~~~V~~l~~sp~~~~~l~s~  166 (751)
                      .+++  +  +++|++++ .++.|.+|++... +...     .....          ...+...+.+++|+|++..+++++
T Consensus       104 ~~~~--d--g~~l~~~~~~~~~v~~~~~~~~-g~~~-----~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~  173 (361)
T 3scy_A          104 YLTT--N--GKNIVTANYSGGSITVFPIGQD-GALL-----PASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADD  173 (361)
T ss_dssp             EEEE--C--SSEEEEEETTTTEEEEEEBCTT-SCBC-----SCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEE
T ss_pred             EEEE--C--CCEEEEEECCCCEEEEEEeCCC-CcCc-----ccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEe
Confidence            7777  5  56666655 6889999999752 1110     00110          111234468899999543455666


Q ss_pred             eCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEe-CCCeEEEEeC
Q 004468          167 SEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGG-SDAFARLYDR  245 (751)
Q Consensus       167 s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs-~D~~IriwD~  245 (751)
                      ..++.|++|++.......................            .....+..++|+|+ ++++++++ .++.|++||+
T Consensus       174 ~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~------------~~~~~~~~~~~spd-g~~l~v~~~~~~~v~v~~~  240 (361)
T 3scy_A          174 LGTDQIHKFNINPNANADNKEKFLTKGTPEAFKV------------APGSGPRHLIFNSD-GKFAYLINEIGGTVIAFRY  240 (361)
T ss_dssp             TTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEEC------------CTTCCEEEEEECTT-SSEEEEEETTTCEEEEEEE
T ss_pred             CCCCEEEEEEEcCCCCcccccceeecccccceec------------CCCCCCeEEEEcCC-CCEEEEEcCCCCeEEEEEe
Confidence            6689999999876431000000000000001100            01234678999995 67666666 7899999998


Q ss_pred             CCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCC--CcEEEEECC--CCCccee-eeec
Q 004468          246 RMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG--EHVYLMDVN--HAGGRAM-RYTV  320 (751)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d--~~I~lwdl~--~~~~~~~-~~~~  320 (751)
                      .+++...           +...   ... ..+.. .+..++|+|||++|+++..+  +.|.+|++.  ++..... ....
T Consensus       241 ~~g~~~~-----------~~~~---~~~-~~~~~-~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~  304 (361)
T 3scy_A          241 ADGMLDE-----------IQTV---AAD-TVNAQ-GSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT  304 (361)
T ss_dssp             ETTEEEE-----------EEEE---ESC-SSCCC-CEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC
T ss_pred             cCCceEE-----------eEEE---ecC-CCCCC-CcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC
Confidence            7542110           0000   000 00111 36899999999999776654  899999996  3332222 2222


Q ss_pred             CCCceeEEeCCCCCCcccC
Q 004468          321 GDASKIMSFTPTLNGLELQ  339 (751)
Q Consensus       321 ~~~~~~~~~sp~~~~~~~~  339 (751)
                      +..+..++|+|+.+.+...
T Consensus       305 g~~~~~~~~spdg~~l~~~  323 (361)
T 3scy_A          305 GIHPRNFIITPNGKYLLVA  323 (361)
T ss_dssp             SSCCCEEEECTTSCEEEEE
T ss_pred             CCCCceEEECCCCCEEEEE
Confidence            5567789999988766544

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.54  E-value=6.1e-14  Score=152.07  Aligned_cols=211  Identities=10%  Similarity=0.034  Sum_probs=126.9

Q ss_pred             cccEEeccCCCc-----EEEEEECCCCCEEEEEeCC---CcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEE
Q 004468           41 SQERELEGHQGC-----VNAISWNSKGSLLISGSDD---THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVS  112 (751)
Q Consensus        41 ~~~~~L~gH~~~-----V~~l~~s~dg~~LaSgs~D---g~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~s  112 (751)
                      +.+..|..+...     +..++|+|||++||..+..   ..|.+||+.+++..... .++......+.|+|+  |+.|+.
T Consensus        21 ~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~-~~~~~~~~~~~~spd--g~~l~~   97 (396)
T 3c5m_A           21 VKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLT-EGKGDNTFGGFISTD--ERAFFY   97 (396)
T ss_dssp             CEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECC-CSSCBCTTTCEECTT--SSEEEE
T ss_pred             cceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEee-cCCCCccccceECCC--CCEEEE
Confidence            344555555433     7788999999998877553   46888899887654433 333333445889999  899999


Q ss_pred             EECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeE-------------------EEEecCCCCEEEEE-----eC
Q 004468          113 GAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKK-------------------LAVEVGNPHVVWSA-----SE  168 (751)
Q Consensus       113 gs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~-------------------l~~sp~~~~~l~s~-----s~  168 (751)
                      ++.++.|++||+..+.          .......+......                   +.|+| ++..++.+     ..
T Consensus        98 ~~~~~~l~~~d~~~~~----------~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~sp-dg~~~~~~~~~~~~~  166 (396)
T 3c5m_A           98 VKNELNLMKVDLETLE----------EQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQP-LTSWEKFAEFYHTNP  166 (396)
T ss_dssp             EETTTEEEEEETTTCC----------EEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCC-CCSHHHHHHHHHTCC
T ss_pred             EEcCCcEEEEECCCCC----------cEEEEecccccCCCCCEEEeccCCccccccccccccCC-CCcceeeeeeccCCC
Confidence            9999999999998642          22233323332111                   23444 22332222     34


Q ss_pred             CCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCC------CeEEE
Q 004468          169 DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD------AFARL  242 (751)
Q Consensus       169 Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D------~~Iri  242 (751)
                      +..|.+||+.+++.                       ..+.   .+...+..+.|+|+++..|+..+.+      ..|.+
T Consensus       167 ~~~l~~~d~~~g~~-----------------------~~~~---~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~  220 (396)
T 3c5m_A          167 TCRLIKVDIETGEL-----------------------EVIH---QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWL  220 (396)
T ss_dssp             CEEEEEEETTTCCE-----------------------EEEE---EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEE
T ss_pred             cceEEEEECCCCcE-----------------------Eeec---cCCcccccceECCCCCCEEEEEecCCCCCCCceEEE
Confidence            55677777765431                       1111   1234578899999445656555543      36888


Q ss_pred             EeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCC-----CcEEEEECCCC
Q 004468          243 YDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG-----EHVYLMDVNHA  311 (751)
Q Consensus       243 wD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d-----~~I~lwdl~~~  311 (751)
                      ||+...+...              ...      ......+..++|+|||++|+..+.+     +.|++||+.++
T Consensus       221 ~d~~~~~~~~--------------l~~------~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g  274 (396)
T 3c5m_A          221 VNEDGSNVRK--------------IKE------HAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETL  274 (396)
T ss_dssp             EETTSCCCEE--------------SSC------CCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTC
T ss_pred             EECCCCceeE--------------eec------cCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCC
Confidence            8876432110              000      0011237889999999988777543     34888887663

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.51  E-value=1.3e-12  Score=140.86  Aligned_cols=266  Identities=9%  Similarity=0.042  Sum_probs=166.8

Q ss_pred             ccccccchhhhccccccEEeccCCCcEEEEEECCCCCEEEEEe----------CCCcEEEEeCCCCeEEEEeccc-----
Q 004468           27 NHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGS----------DDTHINVWSYSSRKLLHSIETG-----   91 (751)
Q Consensus        27 ~~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs----------~Dg~I~IWd~~~~~~~~~l~~~-----   91 (751)
                      +..+.+++  ..+.+++.++..+..+  .++|+|||++|.+++          .+++|.+||..+++.+..+...     
T Consensus        30 d~~v~v~D--~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~  105 (361)
T 2oiz_A           30 ESRVHVYD--YTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQ  105 (361)
T ss_dssp             GCEEEEEE--TTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCC
T ss_pred             cCeEEEEE--CCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccc
Confidence            34555554  3455667778777665  899999999999886          3678999999998888877322     


Q ss_pred             CCcceEEEEEecCCCCcEEEEEEC--CCcEEEEECCCCCCCCCCCCCCCCcee-ecccCCceeEEEEecCCCCEEEEEeC
Q 004468           92 HSANVFCTKFVPETSDELVVSGAG--DAEVRLFNLSRFSGRGLDDNAITPSAL-YQCHTRRVKKLAVEVGNPHVVWSASE  168 (751)
Q Consensus        92 h~~~V~~v~fsp~s~~~~l~sgs~--Dg~V~vwd~~~~~~~~~~~~~~~~~~~-~~~h~~~V~~l~~sp~~~~~l~s~s~  168 (751)
                      +......++|+|+  |++|+++..  +++|.+||+.+.          +.+.. +.. .. ...+.+.|+++..+++.+.
T Consensus       106 ~g~~p~~i~~spd--g~~l~v~n~~~~~~v~v~d~~~~----------~~~~~~i~~-~~-~~~v~~~p~~~~~~~~~~~  171 (361)
T 2oiz_A          106 GLNYDGLFRQTTD--GKFIVLQNASPATSIGIVDVAKG----------DYVEDVTAA-AG-CWSVIPQPNRPRSFMTICG  171 (361)
T ss_dssp             BCCCGGGEEECTT--SSEEEEEEESSSEEEEEEETTTT----------EEEEEEGGG-TT-EEEEEECTTSSSEEEEEET
T ss_pred             cCCCcceEEECCC--CCEEEEECCCCCCeEEEEECCCC----------cEEEEEecC-CC-cceeEEcCCCCeeEEEECC
Confidence            2345778999999  888888763  689999999864          23444 332 11 2235677866678888999


Q ss_pred             CCcEEEEecCC-CCCC------CCCCCCC--------Cc----------cceEEEecccCceecccC---CC-------C
Q 004468          169 DGTLRQHDFRQ-GSSC------PPAGSSH--------QE----------CRNILLDLRCGAKRSLAD---PP-------K  213 (751)
Q Consensus       169 Dg~I~iwDlr~-~~~~------~~~~~~~--------~~----------~~~~l~~~~~~~~~~~~~---~~-------~  213 (751)
                      ||.+.+|++.. ++..      .......        ..          ....++++..+....+..   ..       .
T Consensus       172 dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~  251 (361)
T 2oiz_A          172 DGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNW  251 (361)
T ss_dssp             TSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTC
T ss_pred             CCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCcccccccc
Confidence            99999998865 2211      0000000        00          011222222111100000   00       0


Q ss_pred             CccceEEEEEeCCCCcEEEEEe----------CCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceE
Q 004468          214 QTLSLKSCDISSTRPHLLLVGG----------SDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLT  283 (751)
Q Consensus       214 ~~~~v~~i~~sp~~~~~l~sgs----------~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt  283 (751)
                      .......++|+|++.+++++..          ..+.|.+||+.+.+.+..+.                    .+.   +.
T Consensus       252 ~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~--------------------~~~---p~  308 (361)
T 2oiz_A          252 VPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIP--------------------GRD---AL  308 (361)
T ss_dssp             EECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEE--------------------CTT---CC
T ss_pred             ccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEe--------------------cCC---ee
Confidence            0001112689996444444433          13589999998876443321                    111   67


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECCCC--CcceeeeecCCCceeEEeCCCCC
Q 004468          284 HVTFSPNGEEVLLSYSGEHVYLMDVNHA--GGRAMRYTVGDASKIMSFTPTLN  334 (751)
Q Consensus       284 ~v~fspdg~~Ll~~s~d~~I~lwdl~~~--~~~~~~~~~~~~~~~~~~sp~~~  334 (751)
                      +++|+|||++|++++. +.|.+||..++  +........+..+..++++|+..
T Consensus       309 ~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          309 SMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG  360 (361)
T ss_dssp             EEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred             EEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence            8999999999998887 99999999997  43333335677788899998753

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.48  E-value=1.7e-12  Score=151.51  Aligned_cols=207  Identities=10%  Similarity=-0.001  Sum_probs=137.4

Q ss_pred             EeccCCCcEEEEEECCCCCEEEEE--eCCCcEEEEeCCCCeEEEEecccCCcceE---------EEEEe--cCCCCcE-E
Q 004468           45 ELEGHQGCVNAISWNSKGSLLISG--SDDTHINVWSYSSRKLLHSIETGHSANVF---------CTKFV--PETSDEL-V  110 (751)
Q Consensus        45 ~L~gH~~~V~~l~~s~dg~~LaSg--s~Dg~I~IWd~~~~~~~~~l~~~h~~~V~---------~v~fs--p~s~~~~-l  110 (751)
                      .+.+|...|..++|++++-++++.  +.++...||....+.....+ ..|...|.         ...|+  |+  |+. |
T Consensus        18 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~SPD--g~~~l   94 (662)
T 3azo_A           18 LVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESA-LPAPWNVRNRVFEYSGFPWAGVPRPA--GGPLL   94 (662)
T ss_dssp             HHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEES-SCTTCCBCCCGGGTCCCCEEEECCSS--SSCEE
T ss_pred             HHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCccee-CCCCccccccccccCCccceeeeecC--CCeEE
Confidence            467899999999999887788887  66889999996545555566 66776766         67676  88  676 6


Q ss_pred             EEEEC-CCcEEEEECC--C-CCCCCCCCCCCCCceeecc-----cCCceeEEEEecCCCCEEEEEeCC----------Cc
Q 004468          111 VSGAG-DAEVRLFNLS--R-FSGRGLDDNAITPSALYQC-----HTRRVKKLAVEVGNPHVVWSASED----------GT  171 (751)
Q Consensus       111 ~sgs~-Dg~V~vwd~~--~-~~~~~~~~~~~~~~~~~~~-----h~~~V~~l~~sp~~~~~l~s~s~D----------g~  171 (751)
                      +.++. +..|.+|++.  . +.           ...+..     |...+..++|+| +++.|++++.|          ..
T Consensus        95 a~~~~~~~~l~~~~~~~~g~~~-----------~~~l~~~~~~~~~~~~~~~~~sp-Dg~~l~~~~~~~~~~~~~~~~~~  162 (662)
T 3azo_A           95 VFTHFGDQRLYAFEPDAPGGAV-----------PRPLTPVSAVGGGLRWADPVLLP-ERGEVWCMAEEFTGEGPSDVRRF  162 (662)
T ss_dssp             EEEBTTTCCEEEECTTSTTCCC-----------CEECSCCCCSTTCEEEEEEEEET-TTTEEEEEEEEECSSSTTCEEEE
T ss_pred             EEEECCCCeEEEEcCCCCCCCC-----------CEeccCCccCCCCccccCcEECC-CCCEEEEEEecccCCCCCCceeE
Confidence            65543 4556666654  1 11           233333     677889999999 66788888776          58


Q ss_pred             EEEEecCC------CCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCC--------
Q 004468          172 LRQHDFRQ------GSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD--------  237 (751)
Q Consensus       172 I~iwDlr~------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D--------  237 (751)
                      |++||+.+      +...                       .+.  ..+...+..++|+|+ +++|+.++.+        
T Consensus       163 i~~~~~~~~~~~~~~~~~-----------------------~l~--~~~~~~~~~~~~SpD-G~~la~~~~~~~~~~~~~  216 (662)
T 3azo_A          163 LAAVPLDGSAAADRSAVR-----------------------ELS--DDAHRFVTGPRLSPD-GRQAVWLAWDHPRMPWEG  216 (662)
T ss_dssp             EEEEETTSTTTTCGGGSE-----------------------ESS--CSCSSEECCCEECTT-SSEEEEEEECTTCCTTTC
T ss_pred             EEEEECCCCccccCCcee-----------------------EEE--ecCCCcccCceECCC-CCEEEEEECCCCCCCCCC
Confidence            99999876      3210                       011  012245677899995 7888877755        


Q ss_pred             CeEEEEeCC-CCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCC--cEEEEECCC
Q 004468          238 AFARLYDRR-MLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGE--HVYLMDVNH  310 (751)
Q Consensus       238 ~~IriwD~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~--~I~lwdl~~  310 (751)
                      ..|++||+. ++... .          ...+.      .++ ...+..++|+|||++++++..++  .|++||+.+
T Consensus       217 ~~i~~~d~~~~g~~~-~----------~~~l~------~~~-~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~  274 (662)
T 3azo_A          217 TELKTARVTEDGRFA-D----------TRTLL------GGP-EEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPAT  274 (662)
T ss_dssp             EEEEEEEECTTSCEE-E----------EEEEE------EET-TBCEEEEEECTTSCEEEEECTTSSCEEEEECTTT
T ss_pred             cEEEEEEECCCCccc-c----------cEEeC------CCC-CceEcceEECCCCeEEEEECCCCCeEEEEEECCC
Confidence            379999987 34100 0          00110      011 12488999999999777777777  566666544

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.47  E-value=4.6e-12  Score=134.51  Aligned_cols=238  Identities=14%  Similarity=0.085  Sum_probs=162.2

Q ss_pred             CCcEEEEEECCCCCEEEEEeCC------------------------CcEEEEeCCCCeEEEEecccCCcceEEEEEecCC
Q 004468           50 QGCVNAISWNSKGSLLISGSDD------------------------THINVWSYSSRKLLHSIETGHSANVFCTKFVPET  105 (751)
Q Consensus        50 ~~~V~~l~~s~dg~~LaSgs~D------------------------g~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s  105 (751)
                      -+.|.+|+++++|+++++.+.+                        ++|.+||..+++.+..+..++-.....+++.|+ 
T Consensus        23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~-  101 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTD-  101 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTT-
T ss_pred             cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCC-
Confidence            4679999999999999999887                        479999999898887774466678999999998 


Q ss_pred             CCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceee---------cccCCceeEEEEecCCCCEEEEEe-CCCcEEEE
Q 004468          106 SDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALY---------QCHTRRVKKLAVEVGNPHVVWSAS-EDGTLRQH  175 (751)
Q Consensus       106 ~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~---------~~h~~~V~~l~~sp~~~~~l~s~s-~Dg~I~iw  175 (751)
                       |+++++...++.|++||.....         ..+..+         ..+-..+..|+++|+++.++++.+ .++.|++|
T Consensus       102 -g~l~v~d~~~~~v~~~~~~g~~---------~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~  171 (329)
T 3fvz_A          102 -GNYWVTDVALHQVFKLDPHSKE---------GPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQF  171 (329)
T ss_dssp             -SCEEEEETTTTEEEEECTTCSS---------CCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEE
T ss_pred             -CCEEEEECCCCEEEEEeCCCCe---------EEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEE
Confidence             7899998889999999986421         123333         345557899999996778888887 69999999


Q ss_pred             ecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccC
Q 004468          176 DFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQ  255 (751)
Q Consensus       176 Dlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~  255 (751)
                      |. .+...           ..+-....+.    ...+.+......++++|+++.++++...++.|++||..+++.+..+.
T Consensus       172 ~~-~g~~~-----------~~~~~~g~~~----~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~  235 (329)
T 3fvz_A          172 SP-SGKFV-----------TQWGEESSGS----SPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIK  235 (329)
T ss_dssp             CT-TSCEE-----------EEECEECCSS----SCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEC
T ss_pred             cC-CCCEE-----------EEeccCCCCC----CCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEe
Confidence            94 33211           0000000000    00012334578999999657888888899999999998665433221


Q ss_pred             CCCCCCCccccccccccccCCccccceEEEEEcC------CCCEEEEEeCCCcEEEEECCCCCcceeee---ecCCCcee
Q 004468          256 KRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP------NGEEVLLSYSGEHVYLMDVNHAGGRAMRY---TVGDASKI  326 (751)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fsp------dg~~Ll~~s~d~~I~lwdl~~~~~~~~~~---~~~~~~~~  326 (751)
                      .                  .++ ...+..++|+|      +|+.+++...+..|++||+.+++.....-   .....+..
T Consensus       236 ~------------------~~~-~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~  296 (329)
T 3fvz_A          236 H------------------ASF-GRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHD  296 (329)
T ss_dssp             C------------------TTT-TTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEE
T ss_pred             c------------------ccc-CCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeE
Confidence            0                  011 11477899999      33333333345699999998865433321   22334667


Q ss_pred             EEeCCCC
Q 004468          327 MSFTPTL  333 (751)
Q Consensus       327 ~~~sp~~  333 (751)
                      ++++|+.
T Consensus       297 ia~~~dG  303 (329)
T 3fvz_A          297 IVASEDG  303 (329)
T ss_dssp             EEECTTS
T ss_pred             EEECCCC
Confidence            7787765

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.47  E-value=1.3e-12  Score=140.83  Aligned_cols=246  Identities=9%  Similarity=0.079  Sum_probs=149.6

Q ss_pred             CCCcEEEEEECCCCCEEEEEeCCCcEEEEeCC-CCeEEEEecccCCcceEEEEEecCCCCcE--EEEEE-----------
Q 004468           49 HQGCVNAISWNSKGSLLISGSDDTHINVWSYS-SRKLLHSIETGHSANVFCTKFVPETSDEL--VVSGA-----------  114 (751)
Q Consensus        49 H~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~-~~~~~~~l~~~h~~~V~~v~fsp~s~~~~--l~sgs-----------  114 (751)
                      +...+..++|+|+|++|++++.+ .|.+|++. +++..........+.+.+++|+|+  |++  ++++.           
T Consensus        38 ~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spd--g~~l~~~~~~~~~~~~~~~~~  114 (365)
T 1jof_A           38 QDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTN--TRAIFLLAAKQPPYAVYANPF  114 (365)
T ss_dssp             TTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSC--CEEEEEEECSSTTCCEEEEEE
T ss_pred             CCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCC--CCEEEEEEecCCcceecccee
Confidence            44568899999999999999988 99999987 776654331111133567899999  773  55553           


Q ss_pred             --CCCcEEEEECCCCCCCCCCCCCCCCceeec----ccCCceeEEEEecCCCCEEEEEe-CCCcEEEEecC-CCCCCCCC
Q 004468          115 --GDAEVRLFNLSRFSGRGLDDNAITPSALYQ----CHTRRVKKLAVEVGNPHVVWSAS-EDGTLRQHDFR-QGSSCPPA  186 (751)
Q Consensus       115 --~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~----~h~~~V~~l~~sp~~~~~l~s~s-~Dg~I~iwDlr-~~~~~~~~  186 (751)
                        .++++.+|++... +        +....+.    .+...+.+++|+| ++++++++. .++.|++||+. +++..   
T Consensus       115 ~~~~g~v~v~~~~~~-g--------~~~~~~~~~~~~~~~~~~~~~~sp-dG~~l~~~~~~~~~v~~~~~~~~g~~~---  181 (365)
T 1jof_A          115 YKFAGYGNVFSVSET-G--------KLEKNVQNYEYQENTGIHGMVFDP-TETYLYSADLTANKLWTHRKLASGEVE---  181 (365)
T ss_dssp             SSSCCEEEEEEECTT-C--------CEEEEEEEEECCTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTSCEE---
T ss_pred             ecCCceEEEEccCCC-C--------cCcceEeeEEeCCCCcceEEEECC-CCCEEEEEcCCCCEEEEEEECCCCCEE---
Confidence              6899999999741 1        1122222    2556799999999 556555554 47899999997 44310   


Q ss_pred             CCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEe-CCCeEEEEeCCC--CCCccccCCCCCCCCc
Q 004468          187 GSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGG-SDAFARLYDRRM--LPPLTSCQKRMSPPPC  263 (751)
Q Consensus       187 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs-~D~~IriwD~~~--~~~~~~~~~~~~~~~~  263 (751)
                               .+..        +. .+.+...+..++|+|+ ++++++++ .++.|.+|++..  ++......       .
T Consensus       182 ---------~~~~--------~~-~~~~g~~p~~~~~spd-g~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~-------~  235 (365)
T 1jof_A          182 ---------LVGS--------VD-APDPGDHPRWVAMHPT-GNYLYALMEAGNRICEYVIDPATHMPVYTHH-------S  235 (365)
T ss_dssp             ---------EEEE--------EE-CSSTTCCEEEEEECTT-SSEEEEEETTTTEEEEEEECTTTCCEEEEEE-------E
T ss_pred             ---------Eeee--------Ee-cCCCCCCCCEeEECCC-CCEEEEEECCCCeEEEEEEeCCCCcEEEccc-------e
Confidence                     0100        00 0011345788999995 67777666 478999998753  32110000       0


Q ss_pred             cccccccccccCCccc-----cceEEEE-EcCCCCEEEEEeCC-C-----cEEEEECC-CCCccee--eee-cCCCceeE
Q 004468          264 VNYFCPMHLSEHGRSS-----LHLTHVT-FSPNGEEVLLSYSG-E-----HVYLMDVN-HAGGRAM--RYT-VGDASKIM  327 (751)
Q Consensus       264 ~~~~~~~~~~~~g~~~-----~~vt~v~-fspdg~~Ll~~s~d-~-----~I~lwdl~-~~~~~~~--~~~-~~~~~~~~  327 (751)
                      +. ..+...  .++..     ..+..++ |+|||++|+++..+ +     .|.+|++. ++.....  ... ....+..+
T Consensus       236 ~~-~~~~~~--~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~  312 (365)
T 1jof_A          236 FP-LIPPGI--PDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSN  312 (365)
T ss_dssp             EE-SSCTTC--CCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCC
T ss_pred             EE-cCCCCc--CCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccc
Confidence            00 000000  11110     1378999 99999998877653 3     89999997 4332221  121 23446677


Q ss_pred             EeCC---CCCCcccC
Q 004468          328 SFTP---TLNGLELQ  339 (751)
Q Consensus       328 ~~sp---~~~~~~~~  339 (751)
                      +|+|   +.+.+...
T Consensus       313 a~sp~~~dg~~l~v~  327 (365)
T 1jof_A          313 AVSPCPWSDEWMAIT  327 (365)
T ss_dssp             CEEECTTCTTEEEEE
T ss_pred             eecCCCcCCCEEEEE
Confidence            8888   55555443

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.47  E-value=8.2e-13  Score=156.40  Aligned_cols=114  Identities=9%  Similarity=0.038  Sum_probs=89.9

Q ss_pred             CcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcc-----eEEEEEecCCCCcEEEEEECC---------
Q 004468           51 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSAN-----VFCTKFVPETSDELVVSGAGD---------  116 (751)
Q Consensus        51 ~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~-----V~~v~fsp~s~~~~l~sgs~D---------  116 (751)
                      .....+.|+|||++|+++  |++|++||+.+++....+ .+|...     ..++.|+|+  |++|+.++.+         
T Consensus        17 ~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~Spd--g~~l~~~~~~~~~~r~~~~   91 (740)
T 4a5s_A           17 LKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFL-ENSTFDEFGHSINDYSISPD--GQFILLEYNYVKQWRHSYT   91 (740)
T ss_dssp             CCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEE-CTTTTTTCCSCCCEEEECTT--SSEEEEEEEEEECSSSCEE
T ss_pred             ccccccEECCCCcEEEEc--CCcEEEEECCCCceEEEE-echhhhhhcccccceEECCC--CCEEEEEECCeeeEEEccc
Confidence            345589999999999997  899999999999887666 666543     234788999  8999988876         


Q ss_pred             CcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCC
Q 004468          117 AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSS  182 (751)
Q Consensus       117 g~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~  182 (751)
                      +.+.+||+.++.           ...+..|...+...+||| +++.|+.+ .|+.|++||+.++..
T Consensus        92 ~~~~~~d~~~~~-----------~~~l~~~~~~~~~~~~SP-dG~~la~~-~~~~i~~~~~~~~~~  144 (740)
T 4a5s_A           92 ASYDIYDLNKRQ-----------LITEERIPNNTQWVTWSP-VGHKLAYV-WNNDIYVKIEPNLPS  144 (740)
T ss_dssp             EEEEEEETTTTE-----------ECCSSCCCTTEEEEEECS-STTCEEEE-ETTEEEEESSTTSCC
T ss_pred             eEEEEEECCCCc-----------EEEcccCCCcceeeEECC-CCCEEEEE-ECCeEEEEECCCCce
Confidence            556799999642           334566788899999999 56777676 468999999987763

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.43  E-value=6e-13  Score=156.93  Aligned_cols=259  Identities=10%  Similarity=0.021  Sum_probs=146.3

Q ss_pred             ccccccchhhhccccccEEeccCCC---cEEEEEECCCCCEEEEEeC---------CCcEEEEeCCCCeEEEEecccCCc
Q 004468           27 NHSLQMHSSLVRRLSQERELEGHQG---CVNAISWNSKGSLLISGSD---------DTHINVWSYSSRKLLHSIETGHSA   94 (751)
Q Consensus        27 ~~~l~~~~~~i~~~~~~~~L~gH~~---~V~~l~~s~dg~~LaSgs~---------Dg~I~IWd~~~~~~~~~l~~~h~~   94 (751)
                      +..+.+|+.  ...+....+.+|..   .|.+++|||||++||+++.         |+.|+|||+.+++.+...  ....
T Consensus        35 d~~i~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~--~l~~  110 (719)
T 1z68_A           35 DNNIVLYNI--ETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGN--ELPR  110 (719)
T ss_dssp             TSCEEEEES--SSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSS--CCCS
T ss_pred             CCCEEEEEc--CCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccce--ecCc
Confidence            344555542  33445555665544   4899999999999999887         789999999988763211  1125


Q ss_pred             ceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCce---------eEEEEecCCCCEEEE
Q 004468           95 NVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRV---------KKLAVEVGNPHVVWS  165 (751)
Q Consensus        95 ~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V---------~~l~~sp~~~~~l~s  165 (751)
                      .+.+++|+|+  |+.|+.++ |+.|++||+..+....+.. .......+.+|...|         .+++|+| +++.|++
T Consensus       111 ~~~~~~~SPD--G~~la~~~-~~~i~~~~~~~g~~~~l~~-~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSP-DG~~la~  185 (719)
T 1z68_A          111 PIQYLCWSPV--GSKLAYVY-QNNIYLKQRPGDPPFQITF-NGRENKIFNGIPDWVYEEEMLATKYALWWSP-NGKFLAY  185 (719)
T ss_dssp             SBCCEEECSS--TTCEEEEE-TTEEEEESSTTSCCEECCC-CCBTTTEEESSCCHHHHHHTTCSSCCEEECT-TSSEEEE
T ss_pred             ccccceECCC--CCEEEEEE-CCeEEEEeCCCCCcEEEec-CCCcCCeEcccccceeeeecccCcccEEECC-CCCEEEE
Confidence            6899999999  88898886 7899999998643211100 000111223333332         5899999 6688888


Q ss_pred             EeCC-CcEEEEecCCCCCC----------CCCCCCCCccceEEEecccCcee---cccC---CCCCccceEEEEEeCCCC
Q 004468          166 ASED-GTLRQHDFRQGSSC----------PPAGSSHQECRNILLDLRCGAKR---SLAD---PPKQTLSLKSCDISSTRP  228 (751)
Q Consensus       166 ~s~D-g~I~iwDlr~~~~~----------~~~~~~~~~~~~~l~~~~~~~~~---~~~~---~~~~~~~v~~i~~sp~~~  228 (751)
                      ++.| +.+.+|.+......          +..+.........++++..+...   .+..   ...+...+.+++|+|+ +
T Consensus       186 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD-~  264 (719)
T 1z68_A          186 AEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTD-E  264 (719)
T ss_dssp             EEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSS-S
T ss_pred             EEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCC-C
Confidence            7765 33333322110000          00000011112234444433211   1110   1135667899999996 6


Q ss_pred             cEEEEEeCC----CeEEEEe----CCCCCCccccCCCCCCCCccccccccccccCCccccceE-----EEEEcCCCCEEE
Q 004468          229 HLLLVGGSD----AFARLYD----RRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLT-----HVTFSPNGEEVL  295 (751)
Q Consensus       229 ~~l~sgs~D----~~IriwD----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt-----~v~fspdg~~Ll  295 (751)
                      +++++....    ..|.+||    ..+++.....             .  .. ..++.. .+.     .+.|+|||+.|+
T Consensus       265 ~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~-------------~--~~-~~~~~~-~~~~~~~~~~~~spdg~~l~  327 (719)
T 1z68_A          265 RVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQ-------------E--HI-EESRTG-WAGGFFVSTPVFSYDAISYY  327 (719)
T ss_dssp             EEEEEEEESSTTEEEEEEEEECSSSSSEECCGGG-------------E--EE-EECSSS-CSSSSSCCCCEECTTSSCEE
T ss_pred             eEEEEEeccccCeEEEEEEcccCCCCCCceEEEE-------------e--cc-cccCCc-eEccccCCccEECCCCCeEE
Confidence            777764432    2488899    6654322111             0  00 001111 233     678999999765


Q ss_pred             E--EeCCC--cEEEEECCCCC
Q 004468          296 L--SYSGE--HVYLMDVNHAG  312 (751)
Q Consensus       296 ~--~s~d~--~I~lwdl~~~~  312 (751)
                      .  +..++  .|++||+.++.
T Consensus       328 ~~~~~~~g~~~l~~~~~~~~~  348 (719)
T 1z68_A          328 KIFSDKDGYKHIHYIKDTVEN  348 (719)
T ss_dssp             EEEECTTSCEEEEEESSCSTT
T ss_pred             EEEEccCCceEEEEEECCCCc
Confidence            4  33444  68888887754

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.43  E-value=8.6e-13  Score=151.61  Aligned_cols=219  Identities=9%  Similarity=0.011  Sum_probs=139.3

Q ss_pred             ccccccchhhhccccccEEeccCC-CcEEEEEECCCCCEEEEEeC---CCcEEEEeCCC---CeEEEEecccCCcceEEE
Q 004468           27 NHSLQMHSSLVRRLSQERELEGHQ-GCVNAISWNSKGSLLISGSD---DTHINVWSYSS---RKLLHSIETGHSANVFCT   99 (751)
Q Consensus        27 ~~~l~~~~~~i~~~~~~~~L~gH~-~~V~~l~~s~dg~~LaSgs~---Dg~I~IWd~~~---~~~~~~l~~~h~~~V~~v   99 (751)
                      +..+++|.  +.. ...+.|..|. ..|..+.|+|| +++++++.   +....||.+..   +... .+ ..+ ..+...
T Consensus        43 ~g~~~lw~--~~~-g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~-~l-~~~-~~~~~~  115 (582)
T 3o4h_A           43 EGSVNAYL--YDG-GETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPGEEQ-RL-EAV-KPMRIL  115 (582)
T ss_dssp             TTEEEEEE--EET-TEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTTCCE-EC-TTS-CSBEEE
T ss_pred             CCceeEEE--EcC-CCcEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccCCCccc-cc-cCC-CCceee
Confidence            45566666  233 3345555665 68999999999 88888775   55566665432   2222 34 222 234467


Q ss_pred             EEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCC----CcEEEE
Q 004468          100 KFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED----GTLRQH  175 (751)
Q Consensus       100 ~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~D----g~I~iw  175 (751)
                      +|+|+.++..+++++.| .+.|||+.++          + ...+..+..  .+++|+| +++.|++++.|    +.|++|
T Consensus       116 ~~s~dg~~~~~~s~~~~-~~~l~d~~~g----------~-~~~l~~~~~--~~~~~sp-DG~~la~~~~~~~~~~~i~~~  180 (582)
T 3o4h_A          116 SGVDTGEAVVFTGATED-RVALYALDGG----------G-LRELARLPG--FGFVSDI-RGDLIAGLGFFGGGRVSLFTS  180 (582)
T ss_dssp             EEEECSSCEEEEEECSS-CEEEEEEETT----------E-EEEEEEESS--CEEEEEE-ETTEEEEEEEEETTEEEEEEE
T ss_pred             eeCCCCCeEEEEecCCC-CceEEEccCC----------c-EEEeecCCC--ceEEECC-CCCEEEEEEEcCCCCeEEEEE
Confidence            88988422345555554 4559999864          2 222323333  7899999 67888888877    789999


Q ss_pred             ecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCC--eEEEEeCCCCCCccc
Q 004468          176 DFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDA--FARLYDRRMLPPLTS  253 (751)
Q Consensus       176 Dlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~--~IriwD~~~~~~~~~  253 (751)
                      |+.+++..            .+              ..+...+..++|+|+ +++|+++..++  .|++||+.+.+.. .
T Consensus       181 d~~~g~~~------------~l--------------~~~~~~~~~~~~SpD-G~~l~~~~~~~~~~i~~~d~~~~~~~-~  232 (582)
T 3o4h_A          181 NLSSGGLR------------VF--------------DSGEGSFSSASISPG-MKVTAGLETAREARLVTVDPRDGSVE-D  232 (582)
T ss_dssp             ETTTCCCE------------EE--------------CCSSCEEEEEEECTT-SCEEEEEECSSCEEEEEECTTTCCEE-E
T ss_pred             cCCCCCce------------Ee--------------ecCCCccccceECCC-CCEEEEccCCCeeEEEEEcCCCCcEE-E
Confidence            99876521            11              124456789999994 78888888888  8999999876532 1


Q ss_pred             cCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 004468          254 CQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDV  308 (751)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl  308 (751)
                      +...   ...+...          .........|+|||..+++++.++.++||++
T Consensus       233 ~~~~---~~~~~~~----------~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~  274 (582)
T 3o4h_A          233 LELP---SKDFSSY----------RPTAITWLGYLPDGRLAVVARREGRSAVFID  274 (582)
T ss_dssp             CCCS---CSHHHHH----------CCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred             ccCC---CcChhhh----------hhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence            1000   0000000          0001234449999988888889999999999

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.42  E-value=1.1e-11  Score=134.12  Aligned_cols=248  Identities=9%  Similarity=-0.019  Sum_probs=152.8

Q ss_pred             hccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEE--ecCCCCcEEEEE-
Q 004468           37 VRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKF--VPETSDELVVSG-  113 (751)
Q Consensus        37 i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~f--sp~s~~~~l~sg-  113 (751)
                      ....+......+|...+..+.|+|||+.|+.++.++.|.+||+.+++....+ ..+...+....|  +|+  +.+++.. 
T Consensus        67 ~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~~~~~~d--g~~l~~~~  143 (388)
T 3pe7_A           67 LNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVY-QVPAEWVGYGTWVANSD--CTKLVGIE  143 (388)
T ss_dssp             TTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEE-ECCTTEEEEEEEEECTT--SSEEEEEE
T ss_pred             CCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeee-echhhcccccceeECCC--CCeecccc
Confidence            3444555556667666667889999999999999999999999988776555 455555555554  676  7777643 


Q ss_pred             ---------------------ECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCC---
Q 004468          114 ---------------------AGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED---  169 (751)
Q Consensus       114 ---------------------s~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~D---  169 (751)
                                           ..+..|.+||+.++.           ...+..+...+..++|+|.++..|+.++.+   
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~-----------~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~  212 (388)
T 3pe7_A          144 IRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGE-----------STVILQENQWLGHPIYRPYDDSTVAFCHEGPHD  212 (388)
T ss_dssp             EEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCC-----------EEEEEEESSCEEEEEEETTEEEEEEEEECSCTT
T ss_pred             ccCcccccccccchhhhhhccCCcceEEEEECCCCc-----------eEEeecCCccccccEECCCCCCEEEEEEecCCC
Confidence                                 244679999998642           345556777899999999334556555543   


Q ss_pred             ---CcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEE-EEeCCC----eEE
Q 004468          170 ---GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLL-VGGSDA----FAR  241 (751)
Q Consensus       170 ---g~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~-sgs~D~----~Ir  241 (751)
                         ..|.++|+......                       .+.. ......+....|+|+ ++.|+ ++..++    .|+
T Consensus       213 ~~~~~l~~~d~~~~~~~-----------------------~l~~-~~~~~~~~~~~~spd-g~~l~~~~~~~~~~~~~l~  267 (388)
T 3pe7_A          213 LVDARMWLINEDGTNMR-----------------------KVKT-HAEGESCTHEFWVPD-GSALVYVSYLKGSPDRFIY  267 (388)
T ss_dssp             TSSCSEEEEETTSCCCE-----------------------ESCC-CCTTEEEEEEEECTT-SSCEEEEEEETTCCCEEEE
T ss_pred             CCcceEEEEeCCCCceE-----------------------Eeee-CCCCcccccceECCC-CCEEEEEecCCCCCcceEE
Confidence               36777776554311                       0111 001135678899996 55454 343322    399


Q ss_pred             EEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEE---------eCCCcEEEEECCCCC
Q 004468          242 LYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLS---------YSGEHVYLMDVNHAG  312 (751)
Q Consensus       242 iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~---------s~d~~I~lwdl~~~~  312 (751)
                      +||+.+++...           +..+ +..    .+.......+.|+|||+.|+..         ..+..|++||+.++.
T Consensus       268 ~~d~~~g~~~~-----------l~~~-~~~----~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~  331 (388)
T 3pe7_A          268 SADPETLENRQ-----------LTSM-PAC----SHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGT  331 (388)
T ss_dssp             EECTTTCCEEE-----------EEEE-CCE----EEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTE
T ss_pred             EEecCCCceEE-----------EEcC-CCc----eeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCc
Confidence            99998765211           0000 000    0000001123799999988864         446799999999854


Q ss_pred             cceeeeecCC-----------CceeEEeCCCCCCcccCC
Q 004468          313 GRAMRYTVGD-----------ASKIMSFTPTLNGLELQP  340 (751)
Q Consensus       313 ~~~~~~~~~~-----------~~~~~~~sp~~~~~~~~~  340 (751)
                      . .....+..           ....++|+|+.+.+.+..
T Consensus       332 ~-~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s  369 (388)
T 3pe7_A          332 Q-HRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTS  369 (388)
T ss_dssp             E-EEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEE
T ss_pred             e-EEeccccCcccccccccccCCCCccCCCCCCEEEEEe
Confidence            3 33333333           356678899887776653

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.39  E-value=3.9e-12  Score=150.57  Aligned_cols=265  Identities=11%  Similarity=0.090  Sum_probs=159.1

Q ss_pred             ccccccchhhhccccccEEeccCCCc-----EEEEEECCCCCEEEEEeCC---------CcEEEEeCCCCeEEEEecccC
Q 004468           27 NHSLQMHSSLVRRLSQERELEGHQGC-----VNAISWNSKGSLLISGSDD---------THINVWSYSSRKLLHSIETGH   92 (751)
Q Consensus        27 ~~~l~~~~~~i~~~~~~~~L~gH~~~-----V~~l~~s~dg~~LaSgs~D---------g~I~IWd~~~~~~~~~l~~~h   92 (751)
                      +..+.+|+  +.+.+....+.+|...     .+.+.|||||++||.++.+         +.+.|||+.+++.. .+ ..|
T Consensus        35 ~~~i~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~-~l-~~~  110 (740)
T 4a5s_A           35 ENNILVFN--AEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI-TE-ERI  110 (740)
T ss_dssp             TTEEEEEE--TTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC-CS-SCC
T ss_pred             CCcEEEEE--CCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEE-Ec-ccC
Confidence            34555555  3344456667777643     3458899999999999887         55679999988764 34 678


Q ss_pred             CcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCc---------eeEEEEecCCCCEE
Q 004468           93 SANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRR---------VKKLAVEVGNPHVV  163 (751)
Q Consensus        93 ~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~---------V~~l~~sp~~~~~l  163 (751)
                      .+.+..++|||+  |+.||.++ |+.|++|++..+....+.. .......+.++.+.         ...+.||| +++.|
T Consensus       111 ~~~~~~~~~SPd--G~~la~~~-~~~i~~~~~~~~~~~~lt~-~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSp-Dg~~l  185 (740)
T 4a5s_A          111 PNNTQWVTWSPV--GHKLAYVW-NNDIYVKIEPNLPSYRITW-TGKEDIIYNGITDWVYEEEVFSAYSALWWSP-NGTFL  185 (740)
T ss_dssp             CTTEEEEEECSS--TTCEEEEE-TTEEEEESSTTSCCEECCS-CCBTTTEEESBCCHHHHHHTSSSSBCEEECT-TSSEE
T ss_pred             CCcceeeEECCC--CCEEEEEE-CCeEEEEECCCCceEEEcC-CCCccceecCcccccccchhcCCCcceEECC-CCCEE
Confidence            889999999999  88888874 7899999998643221100 00111123333322         24589999 66777


Q ss_pred             EEEeCCCc-EEEEecCCCCCC------------CCCCCCCCccceEEEeccc---C---ceecccCCC---CCccceEEE
Q 004468          164 WSASEDGT-LRQHDFRQGSSC------------PPAGSSHQECRNILLDLRC---G---AKRSLADPP---KQTLSLKSC  221 (751)
Q Consensus       164 ~s~s~Dg~-I~iwDlr~~~~~------------~~~~~~~~~~~~~l~~~~~---~---~~~~~~~~~---~~~~~v~~i  221 (751)
                      +.++.|.+ +.+|++......            +..+.........++++..   +   ....+....   .+...+..+
T Consensus       186 a~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  265 (740)
T 4a5s_A          186 AYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDV  265 (740)
T ss_dssp             EEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEE
T ss_pred             EEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEE
Confidence            77776554 888876432210            0111111222345677766   5   333332211   266779999


Q ss_pred             EEeCCCCcEEEEEe----CCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccc-----eEEEEEcCCCC
Q 004468          222 DISSTRPHLLLVGG----SDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLH-----LTHVTFSPNGE  292 (751)
Q Consensus       222 ~~sp~~~~~l~sgs----~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-----vt~v~fspdg~  292 (751)
                      +|+|+ +++++...    .+..|++||+.+++....         |.....   +...++.. .     ...++|+|||+
T Consensus       266 ~wspd-g~~~~~~~~r~~~~~~i~~~d~~tg~~~~~---------~~~~~~---l~~~~~~~-~v~~~~~~~p~fspDG~  331 (740)
T 4a5s_A          266 TWATQ-ERISLQWLRRIQNYSVMDICDYDESSGRWN---------CLVARQ---HIEMSTTG-WVGRFRPSEPHFTLDGN  331 (740)
T ss_dssp             EEEET-TEEEEEEEESSTTEEEEEEEEEETTTTEEE---------ECGGGC---EEEECSSS-CSSSSSCCCCEECTTSS
T ss_pred             EEeCC-CeEEEEEeCCCCCEEEEEEEECCCCccccc---------eeEEEE---eeeccCCc-eEccCcCCCceEcCCCC
Confidence            99995 67655543    234799999987651000         000000   00001111 1     23578999999


Q ss_pred             EEE-EEeC-C--CcEEEEECCCCCcc
Q 004468          293 EVL-LSYS-G--EHVYLMDVNHAGGR  314 (751)
Q Consensus       293 ~Ll-~~s~-d--~~I~lwdl~~~~~~  314 (751)
                      .|+ ..+. +  .+|++||+.++...
T Consensus       332 ~l~~~~s~~~G~~~l~~~~~~~~~~~  357 (740)
T 4a5s_A          332 SFYKIISNEEGYRHICYFQIDKKDCT  357 (740)
T ss_dssp             EEEEEEECTTSCEEEEEEETTCSSCE
T ss_pred             EEEEEEEcCCCceEEEEEECCCCceE
Confidence            877 5554 3  57999999875433

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.38  E-value=1e-10  Score=123.73  Aligned_cols=242  Identities=10%  Similarity=0.065  Sum_probs=157.2

Q ss_pred             cccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECC----
Q 004468           41 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD----  116 (751)
Q Consensus        41 ~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~D----  116 (751)
                      +....+.++...+.+++|+++|++++++..++.|.+||..+++..... ..+...+.+++|+|+  +++++++..+    
T Consensus        35 ~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~-~~~~~~~~~i~~~~d--g~l~v~~~~~~~~~  111 (333)
T 2dg1_A           35 EPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPF-VSHKANPAAIKIHKD--GRLFVCYLGDFKST  111 (333)
T ss_dssp             EEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEE-ECSSSSEEEEEECTT--SCEEEEECTTSSSC
T ss_pred             ceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEe-eCCCCCcceEEECCC--CcEEEEeCCCCCCC
Confidence            455677788888999999999998889999999999999887765544 356788999999999  7888877766    


Q ss_pred             CcEEEEECCCCCCCCCCCCCCCCceeec--ccCCceeEEEEecCCCCEEEEEeC------CCcEEEEecCCCCCCCCCCC
Q 004468          117 AEVRLFNLSRFSGRGLDDNAITPSALYQ--CHTRRVKKLAVEVGNPHVVWSASE------DGTLRQHDFRQGSSCPPAGS  188 (751)
Q Consensus       117 g~V~vwd~~~~~~~~~~~~~~~~~~~~~--~h~~~V~~l~~sp~~~~~l~s~s~------Dg~I~iwDlr~~~~~~~~~~  188 (751)
                      +.|.+||.....          ....+.  .+...+..++++| ++.++++...      .+.|..+|..+++.      
T Consensus       112 ~~i~~~d~~~~~----------~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~------  174 (333)
T 2dg1_A          112 GGIFAATENGDN----------LQDIIEDLSTAYCIDDMVFDS-KGGFYFTDFRGYSTNPLGGVYYVSPDFRTV------  174 (333)
T ss_dssp             CEEEEECTTSCS----------CEEEECSSSSCCCEEEEEECT-TSCEEEEECCCBTTBCCEEEEEECTTSCCE------
T ss_pred             ceEEEEeCCCCE----------EEEEEccCccCCcccceEECC-CCCEEEEeccccccCCCceEEEEeCCCCEE------
Confidence            689999987532          111121  2456789999999 5677766553      24555555443321      


Q ss_pred             CCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCc-EEEEEeCCCeEEEEeCCC-CCCccccCCCCCCCCcccc
Q 004468          189 SHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPH-LLLVGGSDAFARLYDRRM-LPPLTSCQKRMSPPPCVNY  266 (751)
Q Consensus       189 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~-~l~sgs~D~~IriwD~~~-~~~~~~~~~~~~~~~~~~~  266 (751)
                            ..+..              ....+..++|+|+ ++ ++++...++.|.+||+.. ...+..+..        ..
T Consensus       175 ------~~~~~--------------~~~~~~~i~~~~d-g~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~--------~~  225 (333)
T 2dg1_A          175 ------TPIIQ--------------NISVANGIALSTD-EKVLWVTETTANRLHRIALEDDGVTIQPFGA--------TI  225 (333)
T ss_dssp             ------EEEEE--------------EESSEEEEEECTT-SSEEEEEEGGGTEEEEEEECTTSSSEEEEEE--------EE
T ss_pred             ------EEeec--------------CCCcccceEECCC-CCEEEEEeCCCCeEEEEEecCCCcCcccccc--------eE
Confidence                  01110              1124678999995 55 445556688999999864 221111000        00


Q ss_pred             ccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcceeeeecCC------CceeEEeCCCCCCccc
Q 004468          267 FCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGD------ASKIMSFTPTLNGLEL  338 (751)
Q Consensus       267 ~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~~~~~~~------~~~~~~~sp~~~~~~~  338 (751)
                      +  ...  .++  ..+..++++++|+.+++...++.|++||.+. +..........      .+..++|+|+.+.+.+
T Consensus       226 ~--~~~--~~~--~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~g-~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v  296 (333)
T 2dg1_A          226 P--YYF--TGH--EGPDSCCIDSDDNLYVAMYGQGRVLVFNKRG-YPIGQILIPGRDEGHMLRSTHPQFIPGTNQLII  296 (333)
T ss_dssp             E--EEC--CSS--SEEEEEEEBTTCCEEEEEETTTEEEEECTTS-CEEEEEECTTGGGTCSCBCCEEEECTTSCEEEE
T ss_pred             E--Eec--CCC--CCCCceEECCCCCEEEEEcCCCEEEEECCCC-CEEEEEEcCCCccccccCcceEEECCCCCEEEE
Confidence            0  000  111  1378899999999888887889999999853 32222222211      4667888877544433

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.37  E-value=5.9e-11  Score=122.77  Aligned_cols=202  Identities=9%  Similarity=0.130  Sum_probs=142.7

Q ss_pred             cCCCcEEEEEE-CCCCCEEEEEeC-CCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECC
Q 004468           48 GHQGCVNAISW-NSKGSLLISGSD-DTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLS  125 (751)
Q Consensus        48 gH~~~V~~l~~-s~dg~~LaSgs~-Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~  125 (751)
                      +|...+..+++ .++|+++++... ++.|.+|| .+++.+..+...+...+.++++.|+  ++++++...++.|.+||..
T Consensus        74 ~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~--g~l~v~~~~~~~i~~~~~~  150 (286)
T 1q7f_A           74 SQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTVDNK--GRIIVVECKVMRVIIFDQN  150 (286)
T ss_dssp             TCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTT--SCEEEEETTTTEEEEECTT
T ss_pred             ccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEEEEeCC--CCEEEEECCCCEEEEEcCC
Confidence            35568999999 578887777754 88999999 5677777774455677999999998  7888888888999999965


Q ss_pred             CCCCCCCCCCCCCCceeec--ccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccC
Q 004468          126 RFSGRGLDDNAITPSALYQ--CHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCG  203 (751)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~--~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~  203 (751)
                      .           +.+..+.  .+...+..|+++| +++++++...++.|++||.....               +..+.  
T Consensus       151 g-----------~~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~~~~~~i~~~~~~g~~---------------~~~~~--  201 (286)
T 1q7f_A          151 G-----------NVLHKFGCSKHLEFPNGVVVND-KQEIFISDNRAHCVKVFNYEGQY---------------LRQIG--  201 (286)
T ss_dssp             S-----------CEEEEEECTTTCSSEEEEEECS-SSEEEEEEGGGTEEEEEETTCCE---------------EEEES--
T ss_pred             C-----------CEEEEeCCCCccCCcEEEEECC-CCCEEEEECCCCEEEEEcCCCCE---------------EEEEc--
Confidence            2           2233332  3456789999999 56788888889999999974321               11100  


Q ss_pred             ceecccCCCCCccceEEEEEeCCCCcEEEEEeCCC-eEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccce
Q 004468          204 AKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDA-FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHL  282 (751)
Q Consensus       204 ~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~-~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v  282 (751)
                             ..++...+..++++|+ ++++++...++ .|++||.. ++.+..             +.. +    .. ...+
T Consensus       202 -------~~g~~~~p~~i~~d~~-G~l~v~~~~~~~~i~~~~~~-g~~~~~-------------~~~-~----~~-~~~~  253 (286)
T 1q7f_A          202 -------GEGITNYPIGVGINSN-GEILIADNHNNFNLTIFTQD-GQLISA-------------LES-K----VK-HAQC  253 (286)
T ss_dssp             -------CTTTSCSEEEEEECTT-CCEEEEECSSSCEEEEECTT-SCEEEE-------------EEE-S----SC-CSCE
T ss_pred             -------cCCccCCCcEEEECCC-CCEEEEeCCCCEEEEEECCC-CCEEEE-------------Ecc-c----CC-CCcc
Confidence                   0112245788999995 68888887776 99999954 322211             100 0    01 1137


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004468          283 THVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (751)
Q Consensus       283 t~v~fspdg~~Ll~~s~d~~I~lwdl~~  310 (751)
                      .+++++|+|+.+++ +.++.|++|++..
T Consensus       254 ~~i~~~~~g~l~vs-~~~~~v~v~~~~~  280 (286)
T 1q7f_A          254 FDVALMDDGSVVLA-SKDYRLYIYRYVQ  280 (286)
T ss_dssp             EEEEEETTTEEEEE-ETTTEEEEEECSC
T ss_pred             eeEEECCCCcEEEE-CCCCeEEEEEccc
Confidence            89999999986666 5799999999866

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.35  E-value=2e-10  Score=118.78  Aligned_cols=227  Identities=7%  Similarity=0.082  Sum_probs=152.9

Q ss_pred             ccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecc-----cCCcceEEEEEe-cCCCCcEEEEEEC-CCcE
Q 004468           47 EGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIET-----GHSANVFCTKFV-PETSDELVVSGAG-DAEV  119 (751)
Q Consensus        47 ~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~-----~h~~~V~~v~fs-p~s~~~~l~sgs~-Dg~V  119 (751)
                      .+|-..+.+|+++++|+++++.+.++.|.+||.. ++.+..+..     +|...+.++++. ++  +.++++... ++.|
T Consensus        26 ~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~--g~l~v~~~~~~~~i  102 (286)
T 1q7f_A           26 EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNS--GDIIVTERSPTHQI  102 (286)
T ss_dssp             TTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTT--TEEEEEECGGGCEE
T ss_pred             CCccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCC--CeEEEEcCCCCCEE
Confidence            4566789999999999999999999999999987 666655521     345678999995 55  666666643 8999


Q ss_pred             EEEECCCCCCCCCCCCCCCCceeec-ccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEE
Q 004468          120 RLFNLSRFSGRGLDDNAITPSALYQ-CHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILL  198 (751)
Q Consensus       120 ~vwd~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~  198 (751)
                      ++||...           +.+..+. .+...+..++++| +++++++...++.|.+||.....             ...+
T Consensus       103 ~~~d~~g-----------~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~g~~-------------~~~~  157 (286)
T 1q7f_A          103 QIYNQYG-----------QFVRKFGATILQHPRGVTVDN-KGRIIVVECKVMRVIIFDQNGNV-------------LHKF  157 (286)
T ss_dssp             EEECTTS-----------CEEEEECTTTCSCEEEEEECT-TSCEEEEETTTTEEEEECTTSCE-------------EEEE
T ss_pred             EEECCCC-----------cEEEEecCccCCCceEEEEeC-CCCEEEEECCCCEEEEEcCCCCE-------------EEEe
Confidence            9999542           2233332 3446789999999 56788888888999999964321             0011


Q ss_pred             ecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCcc
Q 004468          199 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRS  278 (751)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  278 (751)
                      .           ...+...+..++++|+ ++++++...++.|++||... +.+..             +.     ..++.
T Consensus       158 ~-----------~~~~~~~p~~i~~~~~-g~l~v~~~~~~~i~~~~~~g-~~~~~-------------~~-----~~g~~  206 (286)
T 1q7f_A          158 G-----------CSKHLEFPNGVVVNDK-QEIFISDNRAHCVKVFNYEG-QYLRQ-------------IG-----GEGIT  206 (286)
T ss_dssp             E-----------CTTTCSSEEEEEECSS-SEEEEEEGGGTEEEEEETTC-CEEEE-------------ES-----CTTTS
T ss_pred             C-----------CCCccCCcEEEEECCC-CCEEEEECCCCEEEEEcCCC-CEEEE-------------Ec-----cCCcc
Confidence            0           0012345789999995 67777778899999999742 21111             10     01111


Q ss_pred             ccceEEEEEcCCCCEEEEEeCCC-cEEEEECCCCCcceeeeecCC--CceeEEeCCCCC
Q 004468          279 SLHLTHVTFSPNGEEVLLSYSGE-HVYLMDVNHAGGRAMRYTVGD--ASKIMSFTPTLN  334 (751)
Q Consensus       279 ~~~vt~v~fspdg~~Ll~~s~d~-~I~lwdl~~~~~~~~~~~~~~--~~~~~~~sp~~~  334 (751)
                       ..+..++++++|+.+++...++ .|++||... ...........  .+..++++|+.+
T Consensus       207 -~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g-~~~~~~~~~~~~~~~~~i~~~~~g~  263 (286)
T 1q7f_A          207 -NYPIGVGINSNGEILIADNHNNFNLTIFTQDG-QLISALESKVKHAQCFDVALMDDGS  263 (286)
T ss_dssp             -CSEEEEEECTTCCEEEEECSSSCEEEEECTTS-CEEEEEEESSCCSCEEEEEEETTTE
T ss_pred             -CCCcEEEECCCCCEEEEeCCCCEEEEEECCCC-CEEEEEcccCCCCcceeEEECCCCc
Confidence             1478999999999888887776 999999654 32222222222  244677777653

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.34  E-value=1.2e-11  Score=133.13  Aligned_cols=215  Identities=9%  Similarity=0.031  Sum_probs=134.4

Q ss_pred             cEEEEEECCCCCE--EEEEe-------------CCCcEEEEeCC-CCeEEEEec---ccCCcceEEEEEecCCCCcEEEE
Q 004468           52 CVNAISWNSKGSL--LISGS-------------DDTHINVWSYS-SRKLLHSIE---TGHSANVFCTKFVPETSDELVVS  112 (751)
Q Consensus        52 ~V~~l~~s~dg~~--LaSgs-------------~Dg~I~IWd~~-~~~~~~~l~---~~h~~~V~~v~fsp~s~~~~l~s  112 (751)
                      .+.+++|+|+|++  +++++             .++++.+|++. +++....+.   ..+...+.+++|+|+  |++|++
T Consensus        84 ~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spd--G~~l~~  161 (365)
T 1jof_A           84 HPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPT--ETYLYS  161 (365)
T ss_dssp             SGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTT--SSEEEE
T ss_pred             CCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCC--CCEEEE
Confidence            3567899999994  55653             68999999997 465544331   135678999999999  787776


Q ss_pred             EE-CCCcEEEEECC-CCCCCCCCCCCCCCceeec--ccCCceeEEEEecCCCCEEEEEe-CCCcEEEEecCC--CCCCCC
Q 004468          113 GA-GDAEVRLFNLS-RFSGRGLDDNAITPSALYQ--CHTRRVKKLAVEVGNPHVVWSAS-EDGTLRQHDFRQ--GSSCPP  185 (751)
Q Consensus       113 gs-~Dg~V~vwd~~-~~~~~~~~~~~~~~~~~~~--~h~~~V~~l~~sp~~~~~l~s~s-~Dg~I~iwDlr~--~~~~~~  185 (751)
                      +. .++.|++|++. .+.  .      ..+..+.  .|...+..++|+| +++++++++ .+++|.+|++..  ++... 
T Consensus       162 ~~~~~~~v~~~~~~~~g~--~------~~~~~~~~~~~g~~p~~~~~sp-dg~~l~v~~~~~~~v~v~~~~~~~g~~~~-  231 (365)
T 1jof_A          162 ADLTANKLWTHRKLASGE--V------ELVGSVDAPDPGDHPRWVAMHP-TGNYLYALMEAGNRICEYVIDPATHMPVY-  231 (365)
T ss_dssp             EETTTTEEEEEEECTTSC--E------EEEEEEECSSTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTTCCEEE-
T ss_pred             EcCCCCEEEEEEECCCCC--E------EEeeeEecCCCCCCCCEeEECC-CCCEEEEEECCCCeEEEEEEeCCCCcEEE-
Confidence            65 47899999997 321  1      1122333  2456789999999 556666655 478999998763  22100 


Q ss_pred             CCCCCCccceEEEecccCceecccCCCCCcc------ceEEEE-EeCCCCcEEEEEeCC-C-----eEEEEeCC-CCCCc
Q 004468          186 AGSSHQECRNILLDLRCGAKRSLADPPKQTL------SLKSCD-ISSTRPHLLLVGGSD-A-----FARLYDRR-MLPPL  251 (751)
Q Consensus       186 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~------~v~~i~-~sp~~~~~l~sgs~D-~-----~IriwD~~-~~~~~  251 (751)
                             ....+..+..+       ..++..      .+..++ |+|+ +++|+++..+ .     .|.+|++. +++..
T Consensus       232 -------~~~~~~~~~~~-------~~g~~~~~~~~~~~~~i~~~spd-G~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~  296 (365)
T 1jof_A          232 -------THHSFPLIPPG-------IPDRDPETGKGLYRADVCALTFS-GKYMFASSRANKFELQGYIAGFKLRDCGSIE  296 (365)
T ss_dssp             -------EEEEEESSCTT-------CCCBCTTTSSBSEEEEEEEECTT-SSEEEEEEEESSTTSCCEEEEEEECTTSCEE
T ss_pred             -------ccceEEcCCCC-------cCCcccccccccccccEEEECCC-CCEEEEECCCCCCCCCCeEEEEEECCCCCEE
Confidence                   00000000000       001111      578999 9995 6777666543 2     89999986 33211


Q ss_pred             cccCCCCCCCCccccccccccccCCccccceEEEEEcC---CCCEEEEEeC-CCcEEEEECCCC
Q 004468          252 TSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP---NGEEVLLSYS-GEHVYLMDVNHA  311 (751)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fsp---dg~~Ll~~s~-d~~I~lwdl~~~  311 (751)
                      .           +....+.      + ...+..++|+|   ||++|+++.. ++.|.+|+++..
T Consensus       297 ~-----------~~~~~~~------~-~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~  342 (365)
T 1jof_A          297 K-----------QLFLSPT------P-TSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             E-----------EEEEEEC------S-SCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             E-----------eeeeeec------C-CCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence            0           0000000      0 01245688999   8999999887 489999999874

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.33  E-value=2.9e-10  Score=120.51  Aligned_cols=208  Identities=10%  Similarity=0.044  Sum_probs=146.3

Q ss_pred             cCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCe-EEEEec--------ccCCcceEEEEEecCCCCcEEEEEE-CCC
Q 004468           48 GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK-LLHSIE--------TGHSANVFCTKFVPETSDELVVSGA-GDA  117 (751)
Q Consensus        48 gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~-~~~~l~--------~~h~~~V~~v~fsp~s~~~~l~sgs-~Dg  117 (751)
                      ++-..++.|+++++|+++++...++.|++||..... .+..+.        .++-.....|+|.|+. +.++++.+ .++
T Consensus        88 ~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~-g~lyv~d~~~~~  166 (329)
T 3fvz_A           88 NLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPST-GAVFVSDGYCNS  166 (329)
T ss_dssp             TTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTT-CCEEEEECSSCC
T ss_pred             CccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCC-CeEEEEeCCCCC
Confidence            455689999999999999999999999999986442 444442        2445578999999932 78888886 699


Q ss_pred             cEEEEECCCCCCCCCCCCCCCCceeec----------ccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCC
Q 004468          118 EVRLFNLSRFSGRGLDDNAITPSALYQ----------CHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAG  187 (751)
Q Consensus       118 ~V~vwd~~~~~~~~~~~~~~~~~~~~~----------~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~  187 (751)
                      .|++|+...           ..+..+.          ++-..+..|+++|+++.++++...++.|++||..+++..    
T Consensus       167 ~I~~~~~~g-----------~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~----  231 (329)
T 3fvz_A          167 RIVQFSPSG-----------KFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFV----  231 (329)
T ss_dssp             EEEEECTTS-----------CEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE----
T ss_pred             eEEEEcCCC-----------CEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEE----
Confidence            999999542           2233332          233448899999965889999999999999999865421    


Q ss_pred             CCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEe-------CCCeEEEEeCCCCCCccccCCCCCC
Q 004468          188 SSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGG-------SDAFARLYDRRMLPPLTSCQKRMSP  260 (751)
Q Consensus       188 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs-------~D~~IriwD~~~~~~~~~~~~~~~~  260 (751)
                                ..         ...+.....+..++|+|  +..+++.+       .+..|++||..+++.+..+...   
T Consensus       232 ----------~~---------~~~~~~~~~~~~~~~~p--g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~---  287 (329)
T 3fvz_A          232 ----------RE---------IKHASFGRNVFAISYIP--GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPV---  287 (329)
T ss_dssp             ----------EE---------ECCTTTTTCEEEEEEET--TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCS---
T ss_pred             ----------EE---------EeccccCCCcceeeecC--CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCC---
Confidence                      10         01112334577888888  33443333       3458999999877644332100   


Q ss_pred             CCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004468          261 PPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (751)
Q Consensus       261 ~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~  310 (751)
                                    .++.. .+..|+++|+|..+++...++.|++|++..
T Consensus       288 --------------~~~~~-~p~~ia~~~dG~lyvad~~~~~I~~~~~~~  322 (329)
T 3fvz_A          288 --------------RKHFD-MPHDIVASEDGTVYIGDAHTNTVWKFTLTE  322 (329)
T ss_dssp             --------------SSCCS-SEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred             --------------CCccC-CeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence                          11112 488999999998788888899999999875

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.30  E-value=2.4e-11  Score=131.54  Aligned_cols=224  Identities=7%  Similarity=-0.062  Sum_probs=139.1

Q ss_pred             EEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEE-------------------EEEecCCCCcEEEEE
Q 004468           53 VNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFC-------------------TKFVPETSDELVVSG  113 (751)
Q Consensus        53 V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~-------------------v~fsp~s~~~~l~sg  113 (751)
                      +..+.|+|||++|+.++.++.|.+||+.+++..... ..+......                   +.|+|+  ++.++.+
T Consensus        83 ~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spd--g~~~~~~  159 (396)
T 3c5m_A           83 TFGGFISTDERAFFYVKNELNLMKVDLETLEEQVIY-TVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPL--TSWEKFA  159 (396)
T ss_dssp             TTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEEE-ECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCC--CSHHHHH
T ss_pred             cccceECCCCCEEEEEEcCCcEEEEECCCCCcEEEE-ecccccCCCCCEEEeccCCccccccccccccCCC--Ccceeee
Confidence            334789999999999999999999999887765444 334332222                   345666  4554433


Q ss_pred             -----ECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCC------CcEEEEecCCCCC
Q 004468          114 -----AGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED------GTLRQHDFRQGSS  182 (751)
Q Consensus       114 -----s~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~D------g~I~iwDlr~~~~  182 (751)
                           ..+..|.+||+..+.           ...+..+...+..+.|+|+++..|+..+.+      ..|.+||+..+..
T Consensus       160 ~~~~~~~~~~l~~~d~~~g~-----------~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~  228 (396)
T 3c5m_A          160 EFYHTNPTCRLIKVDIETGE-----------LEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNV  228 (396)
T ss_dssp             HHHHTCCCEEEEEEETTTCC-----------EEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCC
T ss_pred             eeccCCCcceEEEEECCCCc-----------EEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCce
Confidence                 456789999998632           233335677899999999444555554443      3577787755431


Q ss_pred             CCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCC-----CeEEEEeCCCCCCccccCCC
Q 004468          183 CPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD-----AFARLYDRRMLPPLTSCQKR  257 (751)
Q Consensus       183 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D-----~~IriwD~~~~~~~~~~~~~  257 (751)
                      .                       .+.. ......+..++|+|+ +++|+.++.+     +.|++||+.+++...     
T Consensus       229 ~-----------------------~l~~-~~~~~~~~~~~~spd-g~~l~~~~~~~~~~~~~l~~~d~~~g~~~~-----  278 (396)
T 3c5m_A          229 R-----------------------KIKE-HAEGESCTHEFWIPD-GSAMAYVSYFKGQTDRVIYKANPETLENEE-----  278 (396)
T ss_dssp             E-----------------------ESSC-CCTTEEEEEEEECTT-SSCEEEEEEETTTCCEEEEEECTTTCCEEE-----
T ss_pred             e-----------------------Eeec-cCCCccccceEECCC-CCEEEEEecCCCCccceEEEEECCCCCeEE-----
Confidence            1                       0111 001235778999995 5666555443     459999987654211     


Q ss_pred             CCCCCccccccccccccCCccccceEEEEEcC-CCCEEEEEe----------------CCCcEEEEECCCCCcceeeeec
Q 004468          258 MSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP-NGEEVLLSY----------------SGEHVYLMDVNHAGGRAMRYTV  320 (751)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fsp-dg~~Ll~~s----------------~d~~I~lwdl~~~~~~~~~~~~  320 (751)
                            +..          ..  ... +.|+| ||++|++++                .+..|++||+.++... .....
T Consensus       279 ------l~~----------~~--~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~  338 (396)
T 3c5m_A          279 ------VMV----------MP--PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQ-KLCKH  338 (396)
T ss_dssp             ------EEE----------CC--SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCC-EEEEC
T ss_pred             ------eee----------CC--CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceE-EccCC
Confidence                  000          00  123 88999 999888765                3478999999886532 22222


Q ss_pred             CC-----------CceeEEeCCCCCCcccCC
Q 004468          321 GD-----------ASKIMSFTPTLNGLELQP  340 (751)
Q Consensus       321 ~~-----------~~~~~~~sp~~~~~~~~~  340 (751)
                      ..           .....+|+|+...+.+..
T Consensus       339 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s  369 (396)
T 3c5m_A          339 STSWDVLDGDRQITHPHPSFTPNDDGVLFTS  369 (396)
T ss_dssp             CCCCCCBTTBSSTTCCCCEECTTSSEEEEEE
T ss_pred             CCccccccccccCCCCCceEccCCCeEEEEe
Confidence            22           134567888877665543

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.28  E-value=1.7e-10  Score=135.82  Aligned_cols=236  Identities=11%  Similarity=-0.008  Sum_probs=144.2

Q ss_pred             cCCCcEEEEEECCCCCEEEEEeCCC-----cEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCc----
Q 004468           48 GHQGCVNAISWNSKGSLLISGSDDT-----HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAE----  118 (751)
Q Consensus        48 gH~~~V~~l~~s~dg~~LaSgs~Dg-----~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~----  118 (751)
                      +|+..+..++|||||++||.++.++     .|+|||+.+++.+... ..+ ..+.+++|+|+  |+.|+.++.++.    
T Consensus       122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~-~~~-~~~~~~~wspD--g~~l~~~~~~~~~~~~  197 (710)
T 2xdw_A          122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDV-LER-VKFSCMAWTHD--GKGMFYNAYPQQDGKS  197 (710)
T ss_dssp             TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEE-EEE-ECSCCEEECTT--SSEEEEEECCCCSSCC
T ss_pred             CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCccc-ccC-cccceEEEEeC--CCEEEEEEECCccccc
Confidence            4555788999999999999776544     8999999999876643 222 23778999999  788988888766    


Q ss_pred             ------------EEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeC-----CCcEEEEecCC--
Q 004468          119 ------------VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASE-----DGTLRQHDFRQ--  179 (751)
Q Consensus       119 ------------V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~-----Dg~I~iwDlr~--  179 (751)
                                  |++|++.++....      ..+.....|...+..+.|+| +++.|+.++.     +..|++||+.+  
T Consensus       198 ~~~~~~~~~~~~v~~~~l~t~~~~~------~~v~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~~l~~~d~~~~~  270 (710)
T 2xdw_A          198 DGTETSTNLHQKLYYHVLGTDQSED------ILCAEFPDEPKWMGGAELSD-DGRYVLLSIREGCDPVNRLWYCDLQQES  270 (710)
T ss_dssp             SSSCCCCCCCCEEEEEETTSCGGGC------EEEECCTTCTTCEEEEEECT-TSCEEEEEEECSSSSCCEEEEEEGGGSS
T ss_pred             cccccccCCCCEEEEEECCCCcccc------eEEeccCCCCeEEEEEEEcC-CCCEEEEEEEccCCCccEEEEEECcccc
Confidence                        9999998643210      11222233566688999999 5565555543     56899999876  


Q ss_pred             ----CCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCC----CeEEEEeCCCCCCc
Q 004468          180 ----GSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD----AFARLYDRRMLPPL  251 (751)
Q Consensus       180 ----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D----~~IriwD~~~~~~~  251 (751)
                          +...          ...+..              +...+.. .|+|+ +..|+..+.+    ..|.+||+.+....
T Consensus       271 ~~~~~~~~----------~~~l~~--------------~~~~~~~-~~s~d-g~~l~~~s~~~~~~~~l~~~d~~~~~~~  324 (710)
T 2xdw_A          271 NGITGILK----------WVKLID--------------NFEGEYD-YVTNE-GTVFTFKTNRHSPNYRLINIDFTDPEES  324 (710)
T ss_dssp             SSSCSSCC----------CEEEEC--------------SSSSCEE-EEEEE-TTEEEEEECTTCTTCEEEEEETTSCCGG
T ss_pred             cccCCccc----------eEEeeC--------------CCCcEEE-EEecc-CCEEEEEECCCCCCCEEEEEeCCCCCcc
Confidence                3210          011111              1112222 47785 4555544443    36999998764310


Q ss_pred             cccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCC--cEEEEECCCCCcceeeeecCCCceeEEe
Q 004468          252 TSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGE--HVYLMDVNHAGGRAMRYTVGDASKIMSF  329 (751)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~--~I~lwdl~~~~~~~~~~~~~~~~~~~~~  329 (751)
                                 ..+.+.+.      +....+..++|++++..+++...++  .|++||+.+++.......+...+..+++
T Consensus       325 -----------~~~~l~~~------~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~  387 (710)
T 2xdw_A          325 -----------KWKVLVPE------HEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSG  387 (710)
T ss_dssp             -----------GCEEEECC------CSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEEC
T ss_pred             -----------cceeccCC------CCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEec
Confidence                       01111111      1111478899998777777777787  4677787665432222222333445667


Q ss_pred             CCCCCCcc
Q 004468          330 TPTLNGLE  337 (751)
Q Consensus       330 sp~~~~~~  337 (751)
                      +|+.+.+.
T Consensus       388 s~d~~~l~  395 (710)
T 2xdw_A          388 QKKDTEIF  395 (710)
T ss_dssp             CTTCSEEE
T ss_pred             CCCCCEEE
Confidence            77655444

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.28  E-value=3.7e-10  Score=117.47  Aligned_cols=233  Identities=10%  Similarity=0.047  Sum_probs=151.4

Q ss_pred             ccccEEeccCCCcEEEEEECCCCC-EEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCc
Q 004468           40 LSQERELEGHQGCVNAISWNSKGS-LLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAE  118 (751)
Q Consensus        40 ~~~~~~L~gH~~~V~~l~~s~dg~-~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~  118 (751)
                      ......+..+.....+++|+|+|+ +++++..++.|.+||..++  ...+ ..+...+.+++|.|+  |.++++...++.
T Consensus        17 ~~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~-~~~~~~~~~l~~~~d--g~l~v~~~~~~~   91 (296)
T 3e5z_A           17 GAEARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPE-MHPSHHQNGHCLNKQ--GHLIACSHGLRR   91 (296)
T ss_dssp             TCCCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEE-ESSCSSEEEEEECTT--CCEEEEETTTTE
T ss_pred             CCcEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEE-ECCCCCcceeeECCC--CcEEEEecCCCe
Confidence            344566667778889999999998 8889999999999999877  4455 457788999999998  788888777899


Q ss_pred             EEEEECCCCCCCCCCCCCCCCceeec---c-cCCceeEEEEecCCCCEEEEEeC-----------------CCcEEEEec
Q 004468          119 VRLFNLSRFSGRGLDDNAITPSALYQ---C-HTRRVKKLAVEVGNPHVVWSASE-----------------DGTLRQHDF  177 (751)
Q Consensus       119 V~vwd~~~~~~~~~~~~~~~~~~~~~---~-h~~~V~~l~~sp~~~~~l~s~s~-----------------Dg~I~iwDl  177 (751)
                      |.+||..++.          ......   . ....+..++++| +++++++.+.                 .+.|..+|.
T Consensus        92 i~~~d~~~g~----------~~~~~~~~~~~~~~~~~~i~~d~-~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~  160 (296)
T 3e5z_A           92 LERQREPGGE----------WESIADSFEGKKLNSPNDVCLAP-DGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAP  160 (296)
T ss_dssp             EEEECSTTCC----------EEEEECEETTEECCCCCCEEECT-TSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECT
T ss_pred             EEEEcCCCCc----------EEEEeeccCCCCCCCCCCEEECC-CCCEEEECCccccccccccccccccCCCcEEEEECC
Confidence            9999996532          111111   1 123567899999 6678877432                 234444443


Q ss_pred             CCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCC-CCCCccccCC
Q 004468          178 RQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRR-MLPPLTSCQK  256 (751)
Q Consensus       178 r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~-~~~~~~~~~~  256 (751)
                      . ++.            ..+.              ........++|+|+ ++.+++.+.++.|++||+. .++....   
T Consensus       161 ~-g~~------------~~~~--------------~~~~~~~gi~~s~d-g~~lv~~~~~~~i~~~~~~~~g~~~~~---  209 (296)
T 3e5z_A          161 D-GTL------------SAPI--------------RDRVKPNGLAFLPS-GNLLVSDTGDNATHRYCLNARGETEYQ---  209 (296)
T ss_dssp             T-SCE------------EEEE--------------CCCSSEEEEEECTT-SCEEEEETTTTEEEEEEECSSSCEEEE---
T ss_pred             C-CCE------------EEee--------------cCCCCCccEEECCC-CCEEEEeCCCCeEEEEEECCCCcCcCC---
Confidence            3 210            0010              12335678999995 6667777888999999986 2221000   


Q ss_pred             CCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcceeeeecCCCceeEEe-CCCCCC
Q 004468          257 RMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSF-TPTLNG  335 (751)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~~~~~~~~~~~~~~-sp~~~~  335 (751)
                             ...+ ..      + ...+..++++++|+.+++.  ++.|++||... +.......... +..++| .|+.+.
T Consensus       210 -------~~~~-~~------~-~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~g-~~~~~~~~~~~-~~~~~f~~~d~~~  270 (296)
T 3e5z_A          210 -------GVHF-TV------E-PGKTDGLRVDAGGLIWASA--GDGVHVLTPDG-DELGRVLTPQT-TSNLCFGGPEGRT  270 (296)
T ss_dssp             -------EEEE-CC------S-SSCCCSEEEBTTSCEEEEE--TTEEEEECTTS-CEEEEEECSSC-CCEEEEESTTSCE
T ss_pred             -------CeEe-eC------C-CCCCCeEEECCCCCEEEEc--CCeEEEECCCC-CEEEEEECCCC-ceeEEEECCCCCE
Confidence                   0111 00      1 1135679999999866555  88999999873 43333333333 677777 465554


Q ss_pred             ccc
Q 004468          336 LEL  338 (751)
Q Consensus       336 ~~~  338 (751)
                      +..
T Consensus       271 L~v  273 (296)
T 3e5z_A          271 LYM  273 (296)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            443

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.23  E-value=6.5e-10  Score=119.55  Aligned_cols=191  Identities=9%  Similarity=0.065  Sum_probs=122.9

Q ss_pred             CCCEEEEEe------CCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEE----------CCCcEEEEEC
Q 004468           61 KGSLLISGS------DDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGA----------GDAEVRLFNL  124 (751)
Q Consensus        61 dg~~LaSgs------~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs----------~Dg~V~vwd~  124 (751)
                      +++++....      .|+.|.+||..+++.+..+ ..+..+  .++|+|+  +++++++.          .+++|.+||+
T Consensus        14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i-~~g~~p--~i~~spd--g~~lyv~~~~~~~~~~g~~~~~v~v~d~   88 (361)
T 2oiz_A           14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMV-PTAFNG--HVQVSND--GKKIYTMTTYHERITRGKRSDVVEVWDA   88 (361)
T ss_dssp             GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEE-ECCEEE--EEEECTT--SSEEEEEEEEETTSSSSCEEEEEEEEET
T ss_pred             CCCEEEEECCCCCccccCeEEEEECCCCeEEEEe-cCCCCC--ceEECCC--CCEEEEEEecccccccCCCCCEEEEEEC
Confidence            555555543      4789999999999988888 444444  8999999  78888876          3678999999


Q ss_pred             CCCCCCCCCCCCCCCceeecc------cCCceeEEEEecCCCCEEEEEeC--CCcEEEEecCCCCCCCCCCCCCCccceE
Q 004468          125 SRFSGRGLDDNAITPSALYQC------HTRRVKKLAVEVGNPHVVWSASE--DGTLRQHDFRQGSSCPPAGSSHQECRNI  196 (751)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~------h~~~V~~l~~sp~~~~~l~s~s~--Dg~I~iwDlr~~~~~~~~~~~~~~~~~~  196 (751)
                      .+.          +.+..+..      +......++|+| ++++|+++..  +++|.+||+.+++..             
T Consensus        89 ~t~----------~~~~~i~~~~~~~~~g~~p~~i~~sp-dg~~l~v~n~~~~~~v~v~d~~~~~~~-------------  144 (361)
T 2oiz_A           89 DKL----------TFEKEISLPPKRVQGLNYDGLFRQTT-DGKFIVLQNASPATSIGIVDVAKGDYV-------------  144 (361)
T ss_dssp             TTC----------CEEEEEEECTTBCCBCCCGGGEEECT-TSSEEEEEEESSSEEEEEEETTTTEEE-------------
T ss_pred             cCC----------cEEEEEEcCccccccCCCcceEEECC-CCCEEEEECCCCCCeEEEEECCCCcEE-------------
Confidence            854          33444432      234567899999 5566666553  689999999886421             


Q ss_pred             EEe-cccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCC-CCCccccCCCCCCCCcccccccccccc
Q 004468          197 LLD-LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM-LPPLTSCQKRMSPPPCVNYFCPMHLSE  274 (751)
Q Consensus       197 l~~-~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (751)
                       .. ...             .....+.+.|.+...+++.+.|+.+.+|+... ++.......       ...+.+     
T Consensus       145 -~~~i~~-------------~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~-------~~~~~~-----  198 (361)
T 2oiz_A          145 -EDVTAA-------------AGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRS-------KQMFSV-----  198 (361)
T ss_dssp             -EEEGGG-------------TTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEEC-------CCCSCT-----
T ss_pred             -EEEecC-------------CCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccc-------cceEcC-----
Confidence             11 100             11122557776667888899999999998864 221100000       000000     


Q ss_pred             CCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004468          275 HGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (751)
Q Consensus       275 ~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~  310 (751)
                        ..  ....+.++|++..++..+.++.|+++|+..
T Consensus       199 --~~--~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~  230 (361)
T 2oiz_A          199 --KD--DPIFIAPALDKDKAHFVSYYGNVYSADFSG  230 (361)
T ss_dssp             --TT--SCBCSCCEECSSEEEEEBTTSEEEEEECSS
T ss_pred             --CC--CceEEEecccCCEEEEEeCCCeEEEEEecC
Confidence              00  011234577888888888889999999876

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.23  E-value=1.2e-10  Score=135.81  Aligned_cols=219  Identities=11%  Similarity=0.004  Sum_probs=140.2

Q ss_pred             cccEEeccCCCcEE---------EEEEC--CCCCE-EEEEeC-CCcEEEEeCC--CCeEEEEeccc-----CCcceEEEE
Q 004468           41 SQERELEGHQGCVN---------AISWN--SKGSL-LISGSD-DTHINVWSYS--SRKLLHSIETG-----HSANVFCTK  100 (751)
Q Consensus        41 ~~~~~L~gH~~~V~---------~l~~s--~dg~~-LaSgs~-Dg~I~IWd~~--~~~~~~~l~~~-----h~~~V~~v~  100 (751)
                      ...+.|..|...|.         ...|+  |||++ ||.++. +..|.+|++.  .......+ ..     |...+.+++
T Consensus        58 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l-~~~~~~~~~~~~~~~~  136 (662)
T 3azo_A           58 GAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPL-TPVSAVGGGLRWADPV  136 (662)
T ss_dssp             SCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEEC-SCCCCSTTCEEEEEEE
T ss_pred             CCcceeCCCCccccccccccCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEec-cCCccCCCCccccCcE
Confidence            34567777877766         66666  99998 776654 5667777765  20334444 44     678899999


Q ss_pred             EecCCCCcEEEEEECC----------CcEEEEECCCCC----CCCCCCCCCCCceeec-ccCCceeEEEEecCCCCEEEE
Q 004468          101 FVPETSDELVVSGAGD----------AEVRLFNLSRFS----GRGLDDNAITPSALYQ-CHTRRVKKLAVEVGNPHVVWS  165 (751)
Q Consensus       101 fsp~s~~~~l~sgs~D----------g~V~vwd~~~~~----~~~~~~~~~~~~~~~~-~h~~~V~~l~~sp~~~~~l~s  165 (751)
                      |+|+  |+.|++++.|          ..|++||+....    +        . ...+. .+...+..++|+| +++.|+.
T Consensus       137 ~spD--g~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~--------~-~~~l~~~~~~~~~~~~~Sp-DG~~la~  204 (662)
T 3azo_A          137 LLPE--RGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRS--------A-VRELSDDAHRFVTGPRLSP-DGRQAVW  204 (662)
T ss_dssp             EETT--TTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGG--------G-SEESSCSCSSEECCCEECT-TSSEEEE
T ss_pred             ECCC--CCEEEEEEecccCCCCCCceeEEEEEECCCCccccCC--------c-eeEEEecCCCcccCceECC-CCCEEEE
Confidence            9999  8999988877          589999998510    1        1 23444 5567888899999 6677777


Q ss_pred             EeCCC--------cEEEEecC-CCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeC
Q 004468          166 ASEDG--------TLRQHDFR-QGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGS  236 (751)
Q Consensus       166 ~s~Dg--------~I~iwDlr-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~  236 (751)
                      ++.++        .|++||+. ++...        . ...+..             .+...+..+.|+|+ +++++++..
T Consensus       205 ~~~~~~~~~~~~~~i~~~d~~~~g~~~--------~-~~~l~~-------------~~~~~~~~~~~spd-g~l~~~~~~  261 (662)
T 3azo_A          205 LAWDHPRMPWEGTELKTARVTEDGRFA--------D-TRTLLG-------------GPEEAIAQAEWAPD-GSLIVATDR  261 (662)
T ss_dssp             EEECTTCCTTTCEEEEEEEECTTSCEE--------E-EEEEEE-------------ETTBCEEEEEECTT-SCEEEEECT
T ss_pred             EECCCCCCCCCCcEEEEEEECCCCccc--------c-cEEeCC-------------CCCceEcceEECCC-CeEEEEECC
Confidence            66553        79999987 34100        0 011110             12356889999996 568888888


Q ss_pred             CC--eEEEEeCCCCCCccccCCCCCCCCccccccccccccC-CccccceEEEEEcCCCCEEEEEeCCCcEEEE--ECCC
Q 004468          237 DA--FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEH-GRSSLHLTHVTFSPNGEEVLLSYSGEHVYLM--DVNH  310 (751)
Q Consensus       237 D~--~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lw--dl~~  310 (751)
                      ++  .|.+||....+.....              +.+.... ..-...+..++|+|++++++++.. +.++||  |+.+
T Consensus       262 ~~~~~l~~~~~~~~~~~~l~--------------~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~  325 (662)
T 3azo_A          262 TGWWNLHRVDPATGAATQLC--------------RREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPES  325 (662)
T ss_dssp             TSSCEEEEECTTTCCEEESS--------------CCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTT
T ss_pred             CCCeEEEEEECCCCceeecc--------------cccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCC
Confidence            88  5666665444321111              0000000 000001456899999999999988 999999  5554

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.20  E-value=2.5e-09  Score=109.07  Aligned_cols=220  Identities=7%  Similarity=-0.011  Sum_probs=143.3

Q ss_pred             cEEEEEECCCCCEEE-EEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCC
Q 004468           52 CVNAISWNSKGSLLI-SGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGR  130 (751)
Q Consensus        52 ~V~~l~~s~dg~~La-Sgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~  130 (751)
                      ...+|+++++|++++ +.+.++.|.+||..+..... +...+...+.++++.|+  +.++++.. ++.|.+||.....  
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~p~~i~~~~~--g~l~v~~~-~~~i~~~d~~~~~--   98 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTV-LPFNGLYQPQGLAVDGA--GTVYVTDF-NNRVVTLAAGSNN--   98 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----EE-CCCCSCCSCCCEEECTT--CCEEEEET-TTEEEEECTTCSC--
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccce-EeeCCcCCcceeEECCC--CCEEEEcC-CCEEEEEeCCCce--
Confidence            778999999999888 55788999999976554332 21344467889999998  67666665 8899999987421  


Q ss_pred             CCCCCCCCCceeec-ccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceeccc
Q 004468          131 GLDDNAITPSALYQ-CHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLA  209 (751)
Q Consensus       131 ~~~~~~~~~~~~~~-~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  209 (751)
                               ...+. .....+..+++.+ +++++++...++.|.+||..+....             ..           
T Consensus        99 ---------~~~~~~~~~~~p~~i~~~~-~g~l~v~~~~~~~i~~~~~~~~~~~-------------~~-----------  144 (270)
T 1rwi_B           99 ---------QTVLPFDGLNYPEGLAVDT-QGAVYVADRGNNRVVKLAAGSKTQT-------------VL-----------  144 (270)
T ss_dssp             ---------CEECCCCSCSSEEEEEECT-TCCEEEEEGGGTEEEEECTTCCSCE-------------EC-----------
T ss_pred             ---------EeeeecCCcCCCcceEECC-CCCEEEEECCCCEEEEEECCCceeE-------------ee-----------
Confidence                     22222 2235688999999 5678878778899999975543211             00           


Q ss_pred             CCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcC
Q 004468          210 DPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP  289 (751)
Q Consensus       210 ~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fsp  289 (751)
                       .......+.+++++|+ ++++++...++.|.+||.........              ..      ... ..+.++++++
T Consensus       145 -~~~~~~~p~~i~~~~~-g~l~v~~~~~~~i~~~~~~~~~~~~~--------------~~------~~~-~~p~~i~~d~  201 (270)
T 1rwi_B          145 -PFTGLNDPDGVAVDNS-GNVYVTDTDNNRVVKLEAESNNQVVL--------------PF------TDI-TAPWGIAVDE  201 (270)
T ss_dssp             -CCCSCCSCCCEEECTT-CCEEEEEGGGTEEEEECTTTCCEEEC--------------CC------SSC-CSEEEEEECT
T ss_pred             -ccccCCCceeEEEeCC-CCEEEEECCCCEEEEEecCCCceEee--------------cc------cCC-CCceEEEECC
Confidence             0011234678899995 67777777788999999875431110              00      010 1478999999


Q ss_pred             CCCEEEEEeCCCcEEEEECCCCCcceeeeecCCCceeEEeCCCCC
Q 004468          290 NGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLN  334 (751)
Q Consensus       290 dg~~Ll~~s~d~~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp~~~  334 (751)
                      +|..+++...++.|++||..+.............+..+++.|+.+
T Consensus       202 ~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~  246 (270)
T 1rwi_B          202 AGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRT  246 (270)
T ss_dssp             TCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCC
T ss_pred             CCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCC
Confidence            997777777789999999876432221111123456677777643

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.19  E-value=5.3e-10  Score=118.83  Aligned_cols=205  Identities=8%  Similarity=-0.004  Sum_probs=128.6

Q ss_pred             CcEEEEEECCCCCEEEEEeCC---C--cEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECC---------
Q 004468           51 GCVNAISWNSKGSLLISGSDD---T--HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD---------  116 (751)
Q Consensus        51 ~~V~~l~~s~dg~~LaSgs~D---g--~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~D---------  116 (751)
                      ..+..++|+|||++||.++.+   +  .|.+|++.+++..... . +.. +..++|+|+  ++.|+.++.+         
T Consensus        59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~-~-~~~-~~~~~wspd--g~~l~~~~~~~~~~~~~~~  133 (347)
T 2gop_A           59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKIL-E-AKN-IRSLEWNED--SRKLLIVGFKRREDEDFIF  133 (347)
T ss_dssp             ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEE-E-ESE-EEEEEECTT--SSEEEEEEECCCC------
T ss_pred             ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEE-c-CCC-ccceeECCC--CCEEEEEEccCCCcCCcEE
Confidence            568889999999999988754   2  3888888887665444 2 334 999999999  7888877632         


Q ss_pred             ------------------CcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCC-------c
Q 004468          117 ------------------AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG-------T  171 (751)
Q Consensus       117 ------------------g~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg-------~  171 (751)
                                        ..|.+||+..+          +.+..+.. . .+..++|+| ++ +++++..++       .
T Consensus       134 ~~~~~~~~~g~~~~~~~~~~l~~~d~~~~----------~~~~~l~~-~-~~~~~~~sp-dg-~~~~~~~~~~~~~~~~~  199 (347)
T 2gop_A          134 EDDVPAWFDDLGFFDGEKTTFWIFDTESE----------EVIEEFEK-P-RFSSGIWHR-DK-IVVNVPHREIIPQYFKF  199 (347)
T ss_dssp             ---CCCC---------CEEEEEEEETTTT----------EEEEEEEE-E-TTCEEEEET-TE-EEEEEECCCSSCCSSCC
T ss_pred             EcccceeecCcccccCccceEEEEECCCC----------eEEeeecC-C-CcccccCCC-Ce-EEEEEeccccccccccc
Confidence                              56889998754          22233443 3 788999999 55 777776553       3


Q ss_pred             EEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCC--------CeEEEE
Q 004468          172 LRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD--------AFARLY  243 (751)
Q Consensus       172 I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D--------~~Iriw  243 (751)
                      ..+|.+.+++.            ..+..              + ..+..+  +|+ +++|+.++.+        ..|.+|
T Consensus       200 ~~l~~~d~~~~------------~~l~~--------------~-~~~~~~--spd-g~~l~~~~~~~~~~~~~~~~l~~~  249 (347)
T 2gop_A          200 WDIYIWEDGKE------------EKMFE--------------K-VSFYAV--DSD-GERILLYGKPEKKYMSEHNKLYIY  249 (347)
T ss_dssp             EEEEEEETTEE------------EEEEE--------------E-ESEEEE--EEC-SSCEEEEECCSSSCCCSSCEEEEE
T ss_pred             ccEEEeCCCce------------EEecc--------------C-cceeeE--CCC-CCEEEEEEccccCCccccceEEEE
Confidence            45554432210            11110              1 223333  885 6667666644        468888


Q ss_pred             eCCCCCCccccCCCCCCCCccccccccccccCCccccceEE-EEEcCCCCEEEEEeCCCcEEEEECCCCCcceeeeecCC
Q 004468          244 DRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTH-VTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGD  322 (751)
Q Consensus       244 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~-v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~~~~~~~  322 (751)
                      |  +.+..              ...      .++ ...+.. +.|+ || .+++++.++.++|| +.+ +..........
T Consensus       250 d--~~~~~--------------~l~------~~~-~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~-g~~~~~~~~~~  302 (347)
T 2gop_A          250 D--GKEVM--------------GIL------DEV-DRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWD-GEIKPIAKGRH  302 (347)
T ss_dssp             C--SSCEE--------------ESS------TTC-CSEEEEEEEET-TE-EEEEEEETTEEEEE-EES-SSEEEEECSSS
T ss_pred             C--CCceE--------------ecc------ccC-CcccCCccEEc-Cc-EEEEEecCCcEEEE-EcC-CceEEEecCCC
Confidence            8  32211              000      111 124775 8999 88 88888899999999 884 33333333344


Q ss_pred             CceeEEeCC
Q 004468          323 ASKIMSFTP  331 (751)
Q Consensus       323 ~~~~~~~sp  331 (751)
                      .+..++++|
T Consensus       303 ~v~~~~~s~  311 (347)
T 2gop_A          303 WIMGFDVDE  311 (347)
T ss_dssp             EEEEEEESS
T ss_pred             eEEeeeeeC
Confidence            555677777

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.18  E-value=2.1e-10  Score=134.68  Aligned_cols=232  Identities=9%  Similarity=-0.019  Sum_probs=137.6

Q ss_pred             cCCCcEEEEEECCCCCEEE-----EEeCCCcEEEEeCCCCeEEEEecccCCcce--EEEEEecCCCCcEEEEEECCCc--
Q 004468           48 GHQGCVNAISWNSKGSLLI-----SGSDDTHINVWSYSSRKLLHSIETGHSANV--FCTKFVPETSDELVVSGAGDAE--  118 (751)
Q Consensus        48 gH~~~V~~l~~s~dg~~La-----Sgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V--~~v~fsp~s~~~~l~sgs~Dg~--  118 (751)
                      +|...+..++|||||++||     +|+.+.+|+|||+.+++.+.   ..+...+  ..++|+|+  |+.|+.++.|..  
T Consensus       118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~---~~~~~~~~~~~~~wspD--g~~l~~~~~d~~~~  192 (695)
T 2bkl_A          118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK---VDVIEGGKYATPKWTPD--SKGFYYEWLPTDPS  192 (695)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS---SCCBSCCTTCCCEECTT--SSEEEEEECCCCTT
T ss_pred             CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC---CcccCcccccceEEecC--CCEEEEEEecCCCC
Confidence            5666799999999999999     55667899999999887651   1122222  68999999  899999988876  


Q ss_pred             -----------EEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCC----cEEEEecCCCCCC
Q 004468          119 -----------VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG----TLRQHDFRQGSSC  183 (751)
Q Consensus       119 -----------V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg----~I~iwDlr~~~~~  183 (751)
                                 |++|++.++....      ..+.....|...+..+.|+|++ +.|+.++.++    .|.+||..++.. 
T Consensus       193 ~~~~~~~~~~~v~~~~l~t~~~~~------~lv~~~~~~~~~~~~~~~SpDG-~~l~~~~~~~~~~~~l~~~~~~~~~~-  264 (695)
T 2bkl_A          193 IKVDERPGYTTIRYHTLGTEPSKD------TVVHERTGDPTTFLQSDLSRDG-KYLFVYILRGWSENDVYWKRPGEKDF-  264 (695)
T ss_dssp             SCGGGGGGGCEEEEEETTSCGGGC------EEEECCCCCTTCEEEEEECTTS-CCEEEEEEETTTEEEEEEECTTCSSC-
T ss_pred             CccccCCCCCEEEEEECCCCchhc------eEEEecCCCCEEEEEEEECCCC-CEEEEEEeCCCCceEEEEEcCCCCce-
Confidence                       9999998653210      1233334466788999999955 5555555444    555555433221 


Q ss_pred             CCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEe---CCCeEEEEeCCCCCCccccCCCCCC
Q 004468          184 PPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGG---SDAFARLYDRRMLPPLTSCQKRMSP  260 (751)
Q Consensus       184 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs---~D~~IriwD~~~~~~~~~~~~~~~~  260 (751)
                                 ..+..              +...+....+ +++ .+++++.   .++.|.+||+.+....         
T Consensus       265 -----------~~l~~--------------~~~~~~~~~~-~~g-~l~~~s~~~~~~~~l~~~d~~~~~~~---------  308 (695)
T 2bkl_A          265 -----------RLLVK--------------GVGAKYEVHA-WKD-RFYVLTDEGAPRQRVFEVDPAKPARA---------  308 (695)
T ss_dssp             -----------EEEEE--------------CSSCCEEEEE-ETT-EEEEEECTTCTTCEEEEEBTTBCSGG---------
T ss_pred             -----------EEeec--------------CCCceEEEEe-cCC-cEEEEECCCCCCCEEEEEeCCCCCcc---------
Confidence                       11111              1122334445 434 4544444   3588999998764310         


Q ss_pred             CCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCC-CCcceeeeec-CCCceeEEeCCCCCCcc
Q 004468          261 PPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH-AGGRAMRYTV-GDASKIMSFTPTLNGLE  337 (751)
Q Consensus       261 ~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~-~~~~~~~~~~-~~~~~~~~~sp~~~~~~  337 (751)
                        ..+.+.+.      +....+..++|+ ++..+++...|+..+||.+.. ++........ ...+..++++|+.+.+.
T Consensus       309 --~~~~l~~~------~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~  378 (695)
T 2bkl_A          309 --SWKEIVPE------DSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAY  378 (695)
T ss_dssp             --GCEEEECC------CSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEE
T ss_pred             --CCeEEecC------CCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEE
Confidence              00111110      112247888888 667777788888888876552 2222111111 22334455666554444

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.13  E-value=4.7e-09  Score=107.05  Aligned_cols=201  Identities=7%  Similarity=0.022  Sum_probs=140.2

Q ss_pred             CCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCC
Q 004468           49 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFS  128 (751)
Q Consensus        49 H~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~  128 (751)
                      +...+.+|+++++|+++++.. ++.|.+||...... ..+.......+..+++.|+  +.++++...++.|.+|+.....
T Consensus        65 ~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~-~~~~~~~~~~p~~i~~~~~--g~l~v~~~~~~~i~~~~~~~~~  140 (270)
T 1rwi_B           65 GLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQ-TVLPFDGLNYPEGLAVDTQ--GAVYVADRGNNRVVKLAAGSKT  140 (270)
T ss_dssp             SCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCC-EECCCCSCSSEEEEEECTT--CCEEEEEGGGTEEEEECTTCCS
T ss_pred             CcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceE-eeeecCCcCCCcceEECCC--CCEEEEECCCCEEEEEECCCce
Confidence            335688999999999777766 88999999876543 3332234467899999998  7888887788999999765321


Q ss_pred             CCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecc
Q 004468          129 GRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSL  208 (751)
Q Consensus       129 ~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  208 (751)
                                ...........+..+++++ +++++++...++.|.+||.......             ..          
T Consensus       141 ----------~~~~~~~~~~~p~~i~~~~-~g~l~v~~~~~~~i~~~~~~~~~~~-------------~~----------  186 (270)
T 1rwi_B          141 ----------QTVLPFTGLNDPDGVAVDN-SGNVYVTDTDNNRVVKLEAESNNQV-------------VL----------  186 (270)
T ss_dssp             ----------CEECCCCSCCSCCCEEECT-TCCEEEEEGGGTEEEEECTTTCCEE-------------EC----------
T ss_pred             ----------eEeeccccCCCceeEEEeC-CCCEEEEECCCCEEEEEecCCCceE-------------ee----------
Confidence                      1111222334678899999 5678877777899999998764311             00          


Q ss_pred             cCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEc
Q 004468          209 ADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFS  288 (751)
Q Consensus       209 ~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fs  288 (751)
                        .......+.+++++++ +.++++...++.|.+||........              . +     ..+. ..+.+++++
T Consensus       187 --~~~~~~~p~~i~~d~~-g~l~v~~~~~~~v~~~~~~~~~~~~--------------~-~-----~~~~-~~p~~i~~~  242 (270)
T 1rwi_B          187 --PFTDITAPWGIAVDEA-GTVYVTEHNTNQVVKLLAGSTTSTV--------------L-P-----FTGL-NTPLAVAVD  242 (270)
T ss_dssp             --CCSSCCSEEEEEECTT-CCEEEEETTTSCEEEECTTCSCCEE--------------C-C-----CCSC-SCEEEEEEC
T ss_pred             --cccCCCCceEEEECCC-CCEEEEECCCCcEEEEcCCCCccee--------------e-c-----cCCC-CCceeEEEC
Confidence              0011245788999995 5777777778899999986432110              0 0     0011 148899999


Q ss_pred             CCCCEEEEEeCCCcEEEEECCCC
Q 004468          289 PNGEEVLLSYSGEHVYLMDVNHA  311 (751)
Q Consensus       289 pdg~~Ll~~s~d~~I~lwdl~~~  311 (751)
                      ++|+.+++...++.|++|++...
T Consensus       243 ~~g~l~v~~~~~~~v~~~~~~~~  265 (270)
T 1rwi_B          243 SDRTVYVADRGNDRVVKLTSLEH  265 (270)
T ss_dssp             TTCCEEEEEGGGTEEEEECCCGG
T ss_pred             CCCCEEEEECCCCEEEEEcCCCc
Confidence            99998888888999999998873

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.13  E-value=2.3e-10  Score=122.82  Aligned_cols=181  Identities=15%  Similarity=0.102  Sum_probs=128.5

Q ss_pred             cEEEEEECCCCCEEEEEeCCCcEEEEeCCCCe---------EEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEE
Q 004468           52 CVNAISWNSKGSLLISGSDDTHINVWSYSSRK---------LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLF  122 (751)
Q Consensus        52 ~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~---------~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vw  122 (751)
                      .++.|++++...+|++|+.| .++||++....         ........+.. |..|+|  +  +.+|+++ .++.|++|
T Consensus        39 ~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d--~~~L~v~-~~~~l~v~  111 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--H--GDQVLVS-TRNALYSL  111 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--E--TTEEEEE-ESSEEEEE
T ss_pred             cccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--C--CCEEEEE-cCCcEEEE
Confidence            69999999999999999998 46669865332         11111124566 999999  5  7899988 88999999


Q ss_pred             ECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEeccc
Q 004468          123 NLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRC  202 (751)
Q Consensus       123 d~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~  202 (751)
                      |+....          .......|...|.++.+.+.  + +++++.||+|.+||+.++...               .   
T Consensus       112 dv~sl~----------~~~~~~~~~~~v~~i~~~~p--~-~av~~~dG~L~v~dl~~~~~~---------------~---  160 (388)
T 1xip_A          112 DLEELS----------EFRTVTSFEKPVFQLKNVNN--T-LVILNSVNDLSALDLRTKSTK---------------Q---  160 (388)
T ss_dssp             ESSSTT----------CEEEEEECSSCEEEEEECSS--E-EEEEETTSEEEEEETTTCCEE---------------E---
T ss_pred             Echhhh----------ccCccceeecceeeEEecCC--C-EEEEECCCCEEEEEccCCccc---------------c---
Confidence            998642          23445567788888887652  2 888999999999999876521               0   


Q ss_pred             CceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCC--ccccCCCCCCCCcccccccccccc-CCccc
Q 004468          203 GAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPP--LTSCQKRMSPPPCVNYFCPMHLSE-HGRSS  279 (751)
Q Consensus       203 ~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~  279 (751)
                                 ....|+|++|+|. +  +++|..||.|++|+......  ...+.            +|..+.+ .+| .
T Consensus       161 -----------~~~~Vs~v~WSpk-G--~~vg~~dg~i~~~~~~~~~~~~k~~I~------------~Pp~~~~~~~~-~  213 (388)
T 1xip_A          161 -----------LAQNVTSFDVTNS-Q--LAVLLKDRSFQSFAWRNGEMEKQFEFS------------LPSELEELPVE-E  213 (388)
T ss_dssp             -----------EEESEEEEEECSS-E--EEEEETTSCEEEEEEETTEEEEEEEEC------------CCHHHHTSCTT-T
T ss_pred             -----------ccCCceEEEEcCC-c--eEEEEcCCcEEEEcCCCccccccceec------------CCcccccccCC-C
Confidence                       2347999999995 4  78899999999998865431  11110            1111111 122 2


Q ss_pred             cceEEEEEcCCCCEEEEE
Q 004468          280 LHLTHVTFSPNGEEVLLS  297 (751)
Q Consensus       280 ~~vt~v~fspdg~~Ll~~  297 (751)
                      ..|.+|.|.+++.+|++=
T Consensus       214 ~~V~sI~wl~~~~flv~y  231 (388)
T 1xip_A          214 YSPLSVTILSPQDFLAVF  231 (388)
T ss_dssp             SEEEEEEESSSSEEEEEE
T ss_pred             eeEEEEEEecCCeEEEEE
Confidence            469999999999988763

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.11  E-value=2.5e-09  Score=110.34  Aligned_cols=192  Identities=9%  Similarity=0.048  Sum_probs=138.2

Q ss_pred             CCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCC-cceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCC
Q 004468           60 SKGSLLISGSDDTHINVWSYSSRKLLHSIETGHS-ANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAIT  138 (751)
Q Consensus        60 ~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~-~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~  138 (751)
                      ..+++|++++.|+.|.+||.++++.+.++ ..+. ..+.++.++|+  |++|+  +.++.|..||. ++          +
T Consensus         3 ~~~~~lv~~~~~~~v~~~d~~tG~~~w~~-~~~~~~~~~~~~~~pd--G~ilv--s~~~~V~~~d~-~G----------~   66 (276)
T 3no2_A            3 SPQHLLVGGSGWNKIAIINKDTKEIVWEY-PLEKGWECNSVAATKA--GEILF--SYSKGAKMITR-DG----------R   66 (276)
T ss_dssp             CCCEEEEECTTCSEEEEEETTTTEEEEEE-ECCTTCCCCEEEECTT--SCEEE--ECBSEEEEECT-TS----------C
T ss_pred             CCCcEEEeeCCCCEEEEEECCCCeEEEEe-CCCccCCCcCeEECCC--CCEEE--eCCCCEEEECC-CC----------C
Confidence            34689999999999999999999999999 4444 57899999999  88888  45788999998 43          3


Q ss_pred             Cceeeccc-CCceeEEEEecCCCCEEEEEeC-CCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCcc
Q 004468          139 PSALYQCH-TRRVKKLAVEVGNPHVVWSASE-DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTL  216 (751)
Q Consensus       139 ~~~~~~~h-~~~V~~l~~sp~~~~~l~s~s~-Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  216 (751)
                      .+..+..+ ...+.++.+.+ +++++++.+. ++.|..+|. +++              .++.......     ...+..
T Consensus        67 ~~W~~~~~~~~~~~~~~~~~-dG~~lv~~~~~~~~v~~vd~-~Gk--------------~l~~~~~~~~-----~~~~~~  125 (276)
T 3no2_A           67 ELWNIAAPAGCEMQTARILP-DGNALVAWCGHPSTILEVNM-KGE--------------VLSKTEFETG-----IERPHA  125 (276)
T ss_dssp             EEEEEECCTTCEEEEEEECT-TSCEEEEEESTTEEEEEECT-TSC--------------EEEEEEECCS-----CSSGGG
T ss_pred             EEEEEcCCCCccccccEECC-CCCEEEEecCCCCEEEEEeC-CCC--------------EEEEEeccCC-----CCcccc
Confidence            45566554 34688899999 6788888776 777877775 333              1222111000     001112


Q ss_pred             ceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEE
Q 004468          217 SLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLL  296 (751)
Q Consensus       217 ~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~  296 (751)
                      ....+++.+ +++++++...++.|..||.. ++.+..+...                      ..+.++.+.++|+.|++
T Consensus       126 ~~~~v~~~~-~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~----------------------~~~~~~~~~~~g~~~v~  181 (276)
T 3no2_A          126 QFRQINKNK-KGNYLVPLFATSEVREIAPN-GQLLNSVKLS----------------------GTPFSSAFLDNGDCLVA  181 (276)
T ss_dssp             SCSCCEECT-TSCEEEEETTTTEEEEECTT-SCEEEEEECS----------------------SCCCEEEECTTSCEEEE
T ss_pred             cccCceECC-CCCEEEEecCCCEEEEECCC-CCEEEEEECC----------------------CCccceeEcCCCCEEEE
Confidence            344556777 57899999999999999987 7654433210                      12456788999999999


Q ss_pred             EeCCCcEEEEECCCCC
Q 004468          297 SYSGEHVYLMDVNHAG  312 (751)
Q Consensus       297 ~s~d~~I~lwdl~~~~  312 (751)
                      ++.++.|+.||..+++
T Consensus       182 ~~~~~~v~~~d~~tG~  197 (276)
T 3no2_A          182 CGDAHCFVQLNLESNR  197 (276)
T ss_dssp             CBTTSEEEEECTTTCC
T ss_pred             eCCCCeEEEEeCcCCc
Confidence            9888899999999865

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.09  E-value=1e-08  Score=105.72  Aligned_cols=231  Identities=11%  Similarity=0.115  Sum_probs=158.2

Q ss_pred             cccccccchhhhccccccEEeccCC-CcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecC
Q 004468           26 VNHSLQMHSSLVRRLSQERELEGHQ-GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPE  104 (751)
Q Consensus        26 ~~~~l~~~~~~i~~~~~~~~L~gH~-~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~  104 (751)
                      .+..+++++  ..+.+.+.++..|. ..++++.++|+|++|+  +.++.|..||. +++.+..+..++...+.++.+.|+
T Consensus        13 ~~~~v~~~d--~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~d   87 (276)
T 3no2_A           13 GWNKIAIIN--KDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQTARILPD   87 (276)
T ss_dssp             TCSEEEEEE--TTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEEEEEECTT
T ss_pred             CCCEEEEEE--CCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccccccEECCC
Confidence            345666665  33566677787776 5789999999999999  45778999999 899999885444467999999999


Q ss_pred             CCCcEEEEEEC-CCcEEEEECCCCCCCCCCCCCCCCceeec------ccCCceeEEEEecCCCCEEEEEeCCCcEEEEec
Q 004468          105 TSDELVVSGAG-DAEVRLFNLSRFSGRGLDDNAITPSALYQ------CHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDF  177 (751)
Q Consensus       105 s~~~~l~sgs~-Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~------~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDl  177 (751)
                        |++|++.+. ++.|..+|..   +        +.+..+.      .+......+++.+ +++++++...++.|..||.
T Consensus        88 --G~~lv~~~~~~~~v~~vd~~---G--------k~l~~~~~~~~~~~~~~~~~~v~~~~-~G~~lv~~~~~~~v~~~d~  153 (276)
T 3no2_A           88 --GNALVAWCGHPSTILEVNMK---G--------EVLSKTEFETGIERPHAQFRQINKNK-KGNYLVPLFATSEVREIAP  153 (276)
T ss_dssp             --SCEEEEEESTTEEEEEECTT---S--------CEEEEEEECCSCSSGGGSCSCCEECT-TSCEEEEETTTTEEEEECT
T ss_pred             --CCEEEEecCCCCEEEEEeCC---C--------CEEEEEeccCCCCcccccccCceECC-CCCEEEEecCCCEEEEECC
Confidence              899998887 6777766653   2        2222221      2223455667778 6789999999999999998


Q ss_pred             CCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCC
Q 004468          178 RQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKR  257 (751)
Q Consensus       178 r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~  257 (751)
                      . ++              .+|....+            ..+.++.+.+ ++++++++..++.|..+|..+++.+.++...
T Consensus       154 ~-G~--------------~~w~~~~~------------~~~~~~~~~~-~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~  205 (276)
T 3no2_A          154 N-GQ--------------LLNSVKLS------------GTPFSSAFLD-NGDCLVACGDAHCFVQLNLESNRIVRRVNAN  205 (276)
T ss_dssp             T-SC--------------EEEEEECS------------SCCCEEEECT-TSCEEEECBTTSEEEEECTTTCCEEEEEEGG
T ss_pred             C-CC--------------EEEEEECC------------CCccceeEcC-CCCEEEEeCCCCeEEEEeCcCCcEEEEecCC
Confidence            7 64              34433321            1344566777 4788888888889999999988766554211


Q ss_pred             CCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCC--------CcEEEEECCCCCcceeee
Q 004468          258 MSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG--------EHVYLMDVNHAGGRAMRY  318 (751)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d--------~~I~lwdl~~~~~~~~~~  318 (751)
                      ..               .+.....++.+...++|+.+++.+..        +..+++++...++....+
T Consensus       206 ~~---------------~~~~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~  259 (276)
T 3no2_A          206 DI---------------EGVQLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQL  259 (276)
T ss_dssp             GS---------------BSCCCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEE
T ss_pred             CC---------------CCccccccccceEcCCCCEEEEeccCccccccccCCceEEEECCCCCEEEEe
Confidence            00               00011137899999999988887532        345777776544444444

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.08  E-value=5.2e-08  Score=100.48  Aligned_cols=204  Identities=10%  Similarity=0.085  Sum_probs=142.4

Q ss_pred             EeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEEC
Q 004468           45 ELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNL  124 (751)
Q Consensus        45 ~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~  124 (751)
                      .+..+...+.+|+++++|+++++...++.|.+||.. ++........+...+.++++.++  +.++++...++.|..||.
T Consensus         9 ~~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~--g~l~v~~~~~~~i~~~~~   85 (299)
T 2z2n_A            9 NLTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSD--GEVWFTENAANKIGRITK   85 (299)
T ss_dssp             ECCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTT--SCEEEEETTTTEEEEECT
T ss_pred             cCCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCC--CCEEEeCCCCCeEEEECC
Confidence            345666789999999999988887778999999988 55433222345678999999998  788888777889999997


Q ss_pred             CCCCCCCCCCCCCCCceee--cccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEeccc
Q 004468          125 SRFSGRGLDDNAITPSALY--QCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRC  202 (751)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~--~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~  202 (751)
                      ...            ...+  ......+..+++.+ ++.++++...++.|..||. +++..             .+..  
T Consensus        86 ~g~------------~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~d~-~g~~~-------------~~~~--  136 (299)
T 2z2n_A           86 KGI------------IKEYTLPNPDSAPYGITEGP-NGDIWFTEMNGNRIGRITD-DGKIR-------------EYEL--  136 (299)
T ss_dssp             TSC------------EEEEECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEECT-TCCEE-------------EEEC--
T ss_pred             CCc------------EEEEeCCCcCCCceeeEECC-CCCEEEEecCCceEEEECC-CCCEE-------------EecC--
Confidence            621            1222  22455788999998 5678777777889999997 43310             1100  


Q ss_pred             CceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccce
Q 004468          203 GAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHL  282 (751)
Q Consensus       203 ~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v  282 (751)
                               +.....+..+++.++ ++++++...++.|..||. +.+...             ...+.      . ...+
T Consensus       137 ---------~~~~~~~~~i~~~~~-g~l~v~~~~~~~i~~~~~-~g~~~~-------------~~~~~------~-~~~~  185 (299)
T 2z2n_A          137 ---------PNKGSYPSFITLGSD-NALWFTENQNNAIGRITE-SGDITE-------------FKIPT------P-ASGP  185 (299)
T ss_dssp             ---------SSTTCCEEEEEECTT-SCEEEEETTTTEEEEECT-TCCEEE-------------EECSS------T-TCCE
T ss_pred             ---------CCCCCCCceEEEcCC-CCEEEEeCCCCEEEEEcC-CCcEEE-------------eeCCC------C-CCcc
Confidence                     112345788999995 677777767789999998 443111             00000      1 1137


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEECCCCC
Q 004468          283 THVTFSPNGEEVLLSYSGEHVYLMDVNHAG  312 (751)
Q Consensus       283 t~v~fspdg~~Ll~~s~d~~I~lwdl~~~~  312 (751)
                      ..++++++|+.+++...++.|++||. ++.
T Consensus       186 ~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~  214 (299)
T 2z2n_A          186 VGITKGNDDALWFVEIIGNKIGRITT-SGE  214 (299)
T ss_dssp             EEEEECTTSSEEEEETTTTEEEEECT-TCC
T ss_pred             eeEEECCCCCEEEEccCCceEEEECC-CCc
Confidence            89999999997777667889999999 543

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.08  E-value=9.2e-09  Score=106.79  Aligned_cols=204  Identities=10%  Similarity=0.054  Sum_probs=134.2

Q ss_pred             cEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEec--cc-CCcceEEEEEecCCCCcEEEEEEC----
Q 004468           43 ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIE--TG-HSANVFCTKFVPETSDELVVSGAG----  115 (751)
Q Consensus        43 ~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~--~~-h~~~V~~v~fsp~s~~~~l~sgs~----  115 (751)
                      ...+..+.+.+.+|+|+++|+++++...++.|.+||..+++......  .+ ....+..+++.|+  |+++++.+.    
T Consensus        61 ~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~--G~l~vtd~~~g~~  138 (296)
T 3e5z_A           61 LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPD--GSLWFSDPTYGID  138 (296)
T ss_dssp             EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTT--SCEEEEECSHHHH
T ss_pred             eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCC--CCEEEECCccccc
Confidence            45566778889999999999998888888999999998777544331  11 1235678999998  888887431    


Q ss_pred             -------------CCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecC-CCC
Q 004468          116 -------------DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFR-QGS  181 (751)
Q Consensus       116 -------------Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr-~~~  181 (751)
                                   .+.|..++..   +         .+..+..+...+..++|+| +++++++.+.++.|.+||+. .+.
T Consensus       139 ~~~~~~~~~~~~~~~~l~~~~~~---g---------~~~~~~~~~~~~~gi~~s~-dg~~lv~~~~~~~i~~~~~~~~g~  205 (296)
T 3e5z_A          139 KPEEGYGGEMELPGRWVFRLAPD---G---------TLSAPIRDRVKPNGLAFLP-SGNLLVSDTGDNATHRYCLNARGE  205 (296)
T ss_dssp             CGGGSSCCCCCSSSCEEEEECTT---S---------CEEEEECCCSSEEEEEECT-TSCEEEEETTTTEEEEEEECSSSC
T ss_pred             cccccccccccCCCcEEEEECCC---C---------CEEEeecCCCCCccEEECC-CCCEEEEeCCCCeEEEEEECCCCc
Confidence                         2344444433   1         1344455667788999999 55666888889999999987 222


Q ss_pred             CCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCC
Q 004468          182 SCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPP  261 (751)
Q Consensus       182 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~  261 (751)
                      ..        ....++ ..             ....+..++++++ ++++++.  ++.|.+||.. ++.+..+       
T Consensus       206 ~~--------~~~~~~-~~-------------~~~~p~~i~~d~~-G~l~v~~--~~~v~~~~~~-g~~~~~~-------  252 (296)
T 3e5z_A          206 TE--------YQGVHF-TV-------------EPGKTDGLRVDAG-GLIWASA--GDGVHVLTPD-GDELGRV-------  252 (296)
T ss_dssp             EE--------EEEEEE-CC-------------SSSCCCSEEEBTT-SCEEEEE--TTEEEEECTT-SCEEEEE-------
T ss_pred             Cc--------CCCeEe-eC-------------CCCCCCeEEECCC-CCEEEEc--CCeEEEECCC-CCEEEEE-------
Confidence            00        000111 10             2234567899995 6655555  8899999986 3322111       


Q ss_pred             CccccccccccccCCccccceEEEEE-cCCCCEEEEEeCCCcEEEEECCC
Q 004468          262 PCVNYFCPMHLSEHGRSSLHLTHVTF-SPNGEEVLLSYSGEHVYLMDVNH  310 (751)
Q Consensus       262 ~~~~~~~~~~~~~~g~~~~~vt~v~f-spdg~~Ll~~s~d~~I~lwdl~~  310 (751)
                                   ..+..  +++++| +|+++.|++++.+ .++-++..+
T Consensus       253 -------------~~~~~--~~~~~f~~~d~~~L~v~t~~-~l~~~~~~~  286 (296)
T 3e5z_A          253 -------------LTPQT--TSNLCFGGPEGRTLYMTVST-EFWSIETNV  286 (296)
T ss_dssp             -------------ECSSC--CCEEEEESTTSCEEEEEETT-EEEEEECSC
T ss_pred             -------------ECCCC--ceeEEEECCCCCEEEEEcCC-eEEEEEccc
Confidence                         01111  678899 6899999998875 566666666

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.08  E-value=1.8e-08  Score=106.36  Aligned_cols=216  Identities=13%  Similarity=0.102  Sum_probs=133.5

Q ss_pred             ccCCCcEEEEEECCCCCEEEEEeCC----CcEEEEeCCCCeEEEEec-ccCCcceEEEEEecCCCCcEEEEEEC------
Q 004468           47 EGHQGCVNAISWNSKGSLLISGSDD----THINVWSYSSRKLLHSIE-TGHSANVFCTKFVPETSDELVVSGAG------  115 (751)
Q Consensus        47 ~gH~~~V~~l~~s~dg~~LaSgs~D----g~I~IWd~~~~~~~~~l~-~~h~~~V~~v~fsp~s~~~~l~sgs~------  115 (751)
                      ..+...|.+++|+++|++++++..+    +.|.+||..++.....+. ..+...+.++++.|+  +.++++...      
T Consensus        83 ~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~--g~l~v~~~~~~~~~~  160 (333)
T 2dg1_A           83 VSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSK--GGFYFTDFRGYSTNP  160 (333)
T ss_dssp             ECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTT--SCEEEEECCCBTTBC
T ss_pred             eCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCC--CCEEEEeccccccCC
Confidence            3567889999999999988888777    689999998776543331 234567999999998  788877654      


Q ss_pred             CCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCC-CCCCCCCCCCCccc
Q 004468          116 DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQG-SSCPPAGSSHQECR  194 (751)
Q Consensus       116 Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~-~~~~~~~~~~~~~~  194 (751)
                      .+.|..+|....           .+..+..+...+..++|+|++..++++.+.++.|.+||+.+. .....      -..
T Consensus       161 ~~~l~~~~~~~~-----------~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~------~~~  223 (333)
T 2dg1_A          161 LGGVYYVSPDFR-----------TVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQP------FGA  223 (333)
T ss_dssp             CEEEEEECTTSC-----------CEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEE------EEE
T ss_pred             CceEEEEeCCCC-----------EEEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCccc------ccc
Confidence            244555554421           122333344567899999944335666677899999998642 21000      000


Q ss_pred             eEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCcccccccccccc
Q 004468          195 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSE  274 (751)
Q Consensus       195 ~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (751)
                      .....           ...+ ..+..++++++ ++++++...++.|.+||.. .+.+..+.              .....
T Consensus       224 ~~~~~-----------~~~~-~~~~~i~~d~~-G~l~v~~~~~~~v~~~d~~-g~~~~~~~--------------~~~~~  275 (333)
T 2dg1_A          224 TIPYY-----------FTGH-EGPDSCCIDSD-DNLYVAMYGQGRVLVFNKR-GYPIGQIL--------------IPGRD  275 (333)
T ss_dssp             EEEEE-----------CCSS-SEEEEEEEBTT-CCEEEEEETTTEEEEECTT-SCEEEEEE--------------CTTGG
T ss_pred             eEEEe-----------cCCC-CCCCceEECCC-CCEEEEEcCCCEEEEECCC-CCEEEEEE--------------cCCCc
Confidence            00100           0111 35678999995 6787777788999999984 33221110              00000


Q ss_pred             CCccccceEEEEEcCCCCEEEEEeCCC------cEEEEECCC
Q 004468          275 HGRSSLHLTHVTFSPNGEEVLLSYSGE------HVYLMDVNH  310 (751)
Q Consensus       275 ~g~~~~~vt~v~fspdg~~Ll~~s~d~------~I~lwdl~~  310 (751)
                      .++.. .+.+++|+||++.|++++.++      .|+.+++..
T Consensus       276 ~g~~~-~~~~~~~~~dg~~L~v~~~~g~~~~~~~l~~~~~~~  316 (333)
T 2dg1_A          276 EGHML-RSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNGFA  316 (333)
T ss_dssp             GTCSC-BCCEEEECTTSCEEEEEEECGGGTCCEEEEEEECSS
T ss_pred             ccccc-CcceEEECCCCCEEEEEeCccCCCCCceEEEEeccc
Confidence            11111 378899999998887776653      455555443

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.07  E-value=6.2e-09  Score=110.20  Aligned_cols=223  Identities=9%  Similarity=0.072  Sum_probs=148.4

Q ss_pred             CcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCC
Q 004468           51 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGR  130 (751)
Q Consensus        51 ~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~  130 (751)
                      .....+.+. +++++++...++.|.+||..+++.+.++ . .......++++|+  +.++++...++.|.+||+.+.   
T Consensus        44 ~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i-~-~~~~p~~i~~~~~--g~lyv~~~~~~~v~~iD~~t~---  115 (328)
T 3dsm_A           44 DVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRI-T-GFTSPRYIHFLSD--EKAYVTQIWDYRIFIINPKTY---  115 (328)
T ss_dssp             SCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEE-E-CCSSEEEEEEEET--TEEEEEEBSCSEEEEEETTTT---
T ss_pred             ccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEc-C-CCCCCcEEEEeCC--CeEEEEECCCCeEEEEECCCC---
Confidence            456778874 4667777777899999999999998888 3 3467899999998  666666558999999999864   


Q ss_pred             CCCCCCCCCceeecccC-----CceeEEEEecCCCCEEEEEe-CCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCc
Q 004468          131 GLDDNAITPSALYQCHT-----RRVKKLAVEVGNPHVVWSAS-EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGA  204 (751)
Q Consensus       131 ~~~~~~~~~~~~~~~h~-----~~V~~l~~sp~~~~~l~s~s-~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~  204 (751)
                             +....+....     .....+++ . ++.++++.. .+++|.+||+.+++..              .....  
T Consensus       116 -------~~~~~i~~g~~~~~~~~p~~i~~-~-~~~lyv~~~~~~~~v~viD~~t~~~~--------------~~i~~--  170 (328)
T 3dsm_A          116 -------EITGYIECPDMDMESGSTEQMVQ-Y-GKYVYVNCWSYQNRILKIDTETDKVV--------------DELTI--  170 (328)
T ss_dssp             -------EEEEEEECTTCCTTTCBCCCEEE-E-TTEEEEEECTTCCEEEEEETTTTEEE--------------EEEEC--
T ss_pred             -------eEEEEEEcCCccccCCCcceEEE-E-CCEEEEEcCCCCCEEEEEECCCCeEE--------------EEEEc--
Confidence                   2233333222     24567777 3 566666654 4899999999886521              11000  


Q ss_pred             eecccCCCCCccceEEEEEeCCCCcEEEEEeCC----------CeEEEEeCCCCCCccccCCCCCCCCcccccccccccc
Q 004468          205 KRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD----------AFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSE  274 (751)
Q Consensus       205 ~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D----------~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (751)
                                ......+.++|+ +++++++..+          +.|.+||..+.+....+.                +. 
T Consensus       171 ----------g~~p~~i~~~~d-G~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~----------------~~-  222 (328)
T 3dsm_A          171 ----------GIQPTSLVMDKY-NKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFK----------------FK-  222 (328)
T ss_dssp             ----------SSCBCCCEECTT-SEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEE----------------CC-
T ss_pred             ----------CCCccceEEcCC-CCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEe----------------cC-
Confidence                      112356788884 6766666554          789999998765322110                00 


Q ss_pred             CCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcceeeeec--CCCceeEEeCCCCCCcccC
Q 004468          275 HGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTV--GDASKIMSFTPTLNGLELQ  339 (751)
Q Consensus       275 ~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~~~~~--~~~~~~~~~sp~~~~~~~~  339 (751)
                      .+   .....++|+|++++|+++..  .|++||+.+++.....+..  ...+..++++|+...+...
T Consensus       223 ~g---~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva  284 (328)
T 3dsm_A          223 LG---DWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVA  284 (328)
T ss_dssp             TT---CCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEE
T ss_pred             CC---CCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEE
Confidence            01   13789999999999988765  9999999886532222211  3566778888865554433

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.07  E-value=3.7e-08  Score=106.17  Aligned_cols=235  Identities=11%  Similarity=0.044  Sum_probs=144.7

Q ss_pred             ccccccEEeccCCCcEEEEEECCCCCEEEEEe----------CCCcEEEEeCCCCeEEEEeccc------CCcceEEEEE
Q 004468           38 RRLSQERELEGHQGCVNAISWNSKGSLLISGS----------DDTHINVWSYSSRKLLHSIETG------HSANVFCTKF  101 (751)
Q Consensus        38 ~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs----------~Dg~I~IWd~~~~~~~~~l~~~------h~~~V~~v~f  101 (751)
                      .+.+.+.++..-..+  .+.++|||++|..+.          .++.|.+||..+.+.+..+..+      +......+.|
T Consensus        55 ~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~  132 (373)
T 2mad_H           55 GSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNAN  132 (373)
T ss_pred             CCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEE
Confidence            345566667654444  999999999988886          3678999999988888776433      1133558999


Q ss_pred             ecCCCCcEEEEEEC--CCcEEEEECCCCCCCCCCCCCCCCcee-ecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecC
Q 004468          102 VPETSDELVVSGAG--DAEVRLFNLSRFSGRGLDDNAITPSAL-YQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFR  178 (751)
Q Consensus       102 sp~s~~~~l~sgs~--Dg~V~vwd~~~~~~~~~~~~~~~~~~~-~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr  178 (751)
                      +|+  |++|+.+..  ++.|.++| .+.          +.+.. +.. .   .++.+.|.+++.+++.+.||++.++|+ 
T Consensus       133 spD--G~~l~v~n~~~~~~v~viD-~t~----------~~~~~~i~~-~---~~~~~~~~~~~~~~~~~~dg~~~~vd~-  194 (373)
T 2mad_H          133 TPN--NADLLFFQFAAGPAVGLVV-QGG----------SSDDQLLSS-P---TCYHIHPGAPSTFYLLCAQGGLAKTDH-  194 (373)
T ss_pred             CCC--CCEEEEEecCCCCeEEEEE-CCC----------CEEeEEcCC-C---ceEEEEeCCCceEEEEcCCCCEEEEEC-
Confidence            999  788887764  57899999 754          22333 321 1   124556766677888889999999998 


Q ss_pred             CCCCCCCCC-----CCCC-----------c---------cceEEEecccCceecccCCC----------CCccceEEEEE
Q 004468          179 QGSSCPPAG-----SSHQ-----------E---------CRNILLDLRCGAKRSLADPP----------KQTLSLKSCDI  223 (751)
Q Consensus       179 ~~~~~~~~~-----~~~~-----------~---------~~~~l~~~~~~~~~~~~~~~----------~~~~~v~~i~~  223 (751)
                      +++......     ....           .         ....++++..+....+....          ........+.+
T Consensus       195 ~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~  274 (373)
T 2mad_H          195 AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAY  274 (373)
T ss_pred             CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEE
Confidence            654331000     0000           0         01112222111100000000          00112334778


Q ss_pred             eCCCCcEEEEEeC----------CCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCC-
Q 004468          224 SSTRPHLLLVGGS----------DAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGE-  292 (751)
Q Consensus       224 sp~~~~~l~sgs~----------D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~-  292 (751)
                      +|+ +..+.++..          .+.|.++|..+.+.+..+..                   +.   ...+++|+|||+ 
T Consensus       275 s~d-~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~-------------------g~---~p~~i~~s~Dg~~  331 (373)
T 2mad_H          275 LKS-SDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL-------------------GH---DVDAISVAQDGGP  331 (373)
T ss_pred             CCC-CCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEEC-------------------CC---CcCeEEECCCCCe
Confidence            885 455555432          35899999988765443311                   11   367899999999 


Q ss_pred             EEEEEe-CCCcEEEEECCCCCcce
Q 004468          293 EVLLSY-SGEHVYLMDVNHAGGRA  315 (751)
Q Consensus       293 ~Ll~~s-~d~~I~lwdl~~~~~~~  315 (751)
                      .|+++. .++.|.+||+.+.+...
T Consensus       332 ~l~v~~~~~~~V~ViD~~t~~vv~  355 (373)
T 2mad_H          332 DLYALSAGTEVLHIYDAGAGDQDQ  355 (373)
T ss_pred             EEEEEcCCCCeEEEEECCCCCEEe
Confidence            677766 58999999999965443

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.05  E-value=2.4e-08  Score=105.57  Aligned_cols=229  Identities=10%  Similarity=-0.037  Sum_probs=145.9

Q ss_pred             ccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCC----cceEEEEEecCCCCcEEEEE
Q 004468           38 RRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHS----ANVFCTKFVPETSDELVVSG  113 (751)
Q Consensus        38 ~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~----~~V~~v~fsp~s~~~~l~sg  113 (751)
                      .+.+.+.++. .......|+++++|+++++...++.|.+||..+++....+..+..    .....+++ ..  +.++++.
T Consensus        72 ~t~~~~~~i~-~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~--~~lyv~~  147 (328)
T 3dsm_A           72 NTFKEVGRIT-GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YG--KYVYVNC  147 (328)
T ss_dssp             TTCCEEEEEE-CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ET--TEEEEEE
T ss_pred             cccEEEEEcC-CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-EC--CEEEEEc
Confidence            3456666664 346788999999997666665899999999999988877743321    14566777 33  4555555


Q ss_pred             E-CCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCC----------CcEEEEecCCCCC
Q 004468          114 A-GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED----------GTLRQHDFRQGSS  182 (751)
Q Consensus       114 s-~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~D----------g~I~iwDlr~~~~  182 (751)
                      . .++.|.++|+.+.          +.+..+.. ......++++| ++++++++..+          +.|.++|..+++.
T Consensus       148 ~~~~~~v~viD~~t~----------~~~~~i~~-g~~p~~i~~~~-dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v  215 (328)
T 3dsm_A          148 WSYQNRILKIDTETD----------KVVDELTI-GIQPTSLVMDK-YNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTV  215 (328)
T ss_dssp             CTTCCEEEEEETTTT----------EEEEEEEC-SSCBCCCEECT-TSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEE
T ss_pred             CCCCCEEEEEECCCC----------eEEEEEEc-CCCccceEEcC-CCCEEEEECCCccCCccccCCceEEEEECCCCeE
Confidence            4 4899999999864          22334432 23456788998 56777666554          7899999887641


Q ss_pred             CCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCC
Q 004468          183 CPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPP  262 (751)
Q Consensus       183 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~  262 (751)
                      .            ..+.+.            .......++|+|+ ++.|.++..  .|.+||..+.+....         
T Consensus       216 ~------------~~~~~~------------~g~~p~~la~~~d-~~~lyv~~~--~v~~~d~~t~~~~~~---------  259 (328)
T 3dsm_A          216 E------------KQFKFK------------LGDWPSEVQLNGT-RDTLYWINN--DIWRMPVEADRVPVR---------  259 (328)
T ss_dssp             E------------EEEECC------------TTCCCEEEEECTT-SCEEEEESS--SEEEEETTCSSCCSS---------
T ss_pred             E------------EEEecC------------CCCCceeEEEecC-CCEEEEEcc--EEEEEECCCCceeee---------
Confidence            1            001110            0125788999995 566666554  899999987653210         


Q ss_pred             ccccccccccccCCccccceEEEEEcCC-CCEEEEE----eCCCcEEEEECCCCCcceeeeecCCCceeEEeC
Q 004468          263 CVNYFCPMHLSEHGRSSLHLTHVTFSPN-GEEVLLS----YSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFT  330 (751)
Q Consensus       263 ~~~~~~~~~~~~~g~~~~~vt~v~fspd-g~~Ll~~----s~d~~I~lwdl~~~~~~~~~~~~~~~~~~~~~s  330 (751)
                         .+.+.     +  ......++++|+ +..+++.    ..++.|++||.. ++ ....+..+..+..++|.
T Consensus       260 ---~~~~~-----~--~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~-~~~~i~~G~~P~~~~~~  320 (328)
T 3dsm_A          260 ---PFLEF-----R--DTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GK-LIDEFYVGIIPGAFCWK  320 (328)
T ss_dssp             ---CSBCC-----C--SSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CC-EEEEEEEEESEEEEEEE
T ss_pred             ---eeecC-----C--CCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CC-EEEEEEeccCcceEEEe
Confidence               00000     0  124789999995 4544555    568999999998 44 33344445555555554

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.03  E-value=4.1e-08  Score=111.49  Aligned_cols=216  Identities=12%  Similarity=0.136  Sum_probs=144.1

Q ss_pred             cccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCC--CCeEEEEecccCCcceEEEEEe----cCCCCcEEEE
Q 004468           39 RLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYS--SRKLLHSIETGHSANVFCTKFV----PETSDELVVS  112 (751)
Q Consensus        39 ~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~--~~~~~~~l~~~h~~~V~~v~fs----p~s~~~~l~s  112 (751)
                      +.+.+.++... ..+..+.|+|||++|.+++.|+.|.+||+.  +++.+..+..+  .....++|+    |+  |+++++
T Consensus       186 t~~v~~~i~~g-~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G--~~P~~ia~s~~~~pD--Gk~l~v  260 (567)
T 1qks_A          186 TYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIG--SEARSIETSKMEGWE--DKYAIA  260 (567)
T ss_dssp             TCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECC--SEEEEEEECCSTTCT--TTEEEE
T ss_pred             CCeEEEEEeCC-CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecC--CCCceeEEccccCCC--CCEEEE
Confidence            34555666533 357799999999999999999999999995  78888887433  346799999    68  777665


Q ss_pred             E-ECCCcEEEEECCCCCCCCCCCCCCCCceeecc----------cCC-ceeEEEEecCCCCEEEEEeCCCcEEEEecCCC
Q 004468          113 G-AGDAEVRLFNLSRFSGRGLDDNAITPSALYQC----------HTR-RVKKLAVEVGNPHVVWSASEDGTLRQHDFRQG  180 (751)
Q Consensus       113 g-s~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~----------h~~-~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~  180 (751)
                      + ..+++|.|+|..+.          +++..+..          |.. +|..+..+++++.++++..++|.|.++|....
T Consensus       261 ~n~~~~~v~ViD~~t~----------~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~  330 (567)
T 1qks_A          261 GAYWPPQYVIMDGETL----------EPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDL  330 (567)
T ss_dssp             EEEETTEEEEEETTTC----------CEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCS
T ss_pred             EEccCCeEEEEECCCC----------cEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCC
Confidence            5 45699999998764          33443321          222 68889999877777888888899999998764


Q ss_pred             CCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEE-eCCCeEEEEeCCCCCCccccCCCCC
Q 004468          181 SSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVG-GSDAFARLYDRRMLPPLTSCQKRMS  259 (751)
Q Consensus       181 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sg-s~D~~IriwD~~~~~~~~~~~~~~~  259 (751)
                      ...            .+....            .......+.|+|+ +++++++ ..++.|.++|..+.+.+..+...  
T Consensus       331 ~~~------------~v~~i~------------~~~~~~d~~~~pd-gr~~~va~~~sn~V~ViD~~t~kl~~~i~vg--  383 (567)
T 1qks_A          331 NNL------------KTTEIS------------AERFLHDGGLDGS-HRYFITAANARNKLVVIDTKEGKLVAIEDTG--  383 (567)
T ss_dssp             SEE------------EEEEEE------------CCSSEEEEEECTT-SCEEEEEEGGGTEEEEEETTTTEEEEEEECS--
T ss_pred             ccc------------eeeeee------------ccccccCceECCC-CCEEEEEeCCCCeEEEEECCCCcEEEEEecc--
Confidence            311            011100            1124567889996 5666555 46789999999987643322110  


Q ss_pred             CCCccccccccccccCCccccceEEEEEcCCCCEEEEEe--CCCcEEEEECCCC
Q 004468          260 PPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSY--SGEHVYLMDVNHA  311 (751)
Q Consensus       260 ~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s--~d~~I~lwdl~~~  311 (751)
                                   ....|....+. + ++|++..+.+.+  .++.|.++|....
T Consensus       384 -------------g~~Phpg~g~~-~-~~p~~g~v~~t~~~g~~~Vsvid~~~~  422 (567)
T 1qks_A          384 -------------GQTPHPGRGAN-F-VHPTFGPVWATSHMGDDSVALIGTDPE  422 (567)
T ss_dssp             -------------SSSBCCTTCEE-E-EETTTEEEEEEEBSSSSEEEEEECCTT
T ss_pred             -------------CcCCCCcccee-e-ECCCCCcEEEeCCCCCCeEEEecCCCC
Confidence                         00112221233 2 688866555443  4689999999873

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.01  E-value=2e-08  Score=118.02  Aligned_cols=207  Identities=10%  Similarity=0.057  Sum_probs=134.0

Q ss_pred             EEEEEECCCCCEEEEEeCCCc----------------EEEEeCCCCeE--EEEe-cccCCcceEEEEEecCCCCcEEEEE
Q 004468           53 VNAISWNSKGSLLISGSDDTH----------------INVWSYSSRKL--LHSI-ETGHSANVFCTKFVPETSDELVVSG  113 (751)
Q Consensus        53 V~~l~~s~dg~~LaSgs~Dg~----------------I~IWd~~~~~~--~~~l-~~~h~~~V~~v~fsp~s~~~~l~sg  113 (751)
                      +..++|+|||+.|+.++.|+.                |.+|++.++..  ...+ ...|...+..+.|+|+  |++|+.+
T Consensus       173 ~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpD--g~~l~~~  250 (710)
T 2xdw_A          173 FSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDD--GRYVLLS  250 (710)
T ss_dssp             SCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTT--SCEEEEE
T ss_pred             cceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCC--CCEEEEE
Confidence            667999999999999998876                99999987652  1222 1335667889999999  7888776


Q ss_pred             EC-----CCcEEEEECCCCC----CCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCC---CcEEEEecCCCC
Q 004468          114 AG-----DAEVRLFNLSRFS----GRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED---GTLRQHDFRQGS  181 (751)
Q Consensus       114 s~-----Dg~V~vwd~~~~~----~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~D---g~I~iwDlr~~~  181 (751)
                      +.     +..|++||+....    +.       .....+..+...+.. .|+|++..+++.+..+   +.|.+||+.++.
T Consensus       251 ~~~~~~~~~~l~~~d~~~~~~~~~~~-------~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~  322 (710)
T 2xdw_A          251 IREGCDPVNRLWYCDLQQESNGITGI-------LKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPE  322 (710)
T ss_dssp             EECSSSSCCEEEEEEGGGSSSSSCSS-------CCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCC
T ss_pred             EEccCCCccEEEEEECcccccccCCc-------cceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCC
Confidence            64     6789999997510    10       124556666666655 4788555555454433   368999987653


Q ss_pred             CCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCe--EEEEeCCCCCCccccCCCCC
Q 004468          182 SCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAF--ARLYDRRMLPPLTSCQKRMS  259 (751)
Q Consensus       182 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~--IriwD~~~~~~~~~~~~~~~  259 (751)
                      ..        .. ..+..            ......+..++|++ ++.++++...|+.  |++||+.+++.+..+     
T Consensus       323 ~~--------~~-~~l~~------------~~~~~~~~~~~~~~-~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l-----  375 (710)
T 2xdw_A          323 ES--------KW-KVLVP------------EHEKDVLEWVACVR-SNFLVLCYLHDVKNTLQLHDLATGALLKIF-----  375 (710)
T ss_dssp             GG--------GC-EEEEC------------CCSSCEEEEEEEET-TTEEEEEEEETTEEEEEEEETTTCCEEEEE-----
T ss_pred             cc--------cc-eeccC------------CCCCCeEEEEEEEc-CCEEEEEEEECCEEEEEEEECCCCCEEEec-----
Confidence            10        00 11111            00113577888986 4678888888885  455666444322111     


Q ss_pred             CCCccccccccccccCCccccceEEEEEcCCCCEEEEEeC----CCcEEEEECCCCC
Q 004468          260 PPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS----GEHVYLMDVNHAG  312 (751)
Q Consensus       260 ~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~----d~~I~lwdl~~~~  312 (751)
                                     ..+ ...+..++++|+++.|+....    .+.|++||+.++.
T Consensus       376 ---------------~~~-~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          376 ---------------PLE-VGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             ---------------CCC-SSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             ---------------CCC-CceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence                           011 124888999999987765433    4799999998865

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.01  E-value=4.4e-08  Score=102.13  Aligned_cols=233  Identities=9%  Similarity=0.075  Sum_probs=143.6

Q ss_pred             ccCCCcEEEEEECCCCCEEEE-------EeCCCcEEEEeCCCCeEEEEec---ccCCcceEEEEEecCCCCcEEEEEECC
Q 004468           47 EGHQGCVNAISWNSKGSLLIS-------GSDDTHINVWSYSSRKLLHSIE---TGHSANVFCTKFVPETSDELVVSGAGD  116 (751)
Q Consensus        47 ~gH~~~V~~l~~s~dg~~LaS-------gs~Dg~I~IWd~~~~~~~~~l~---~~h~~~V~~v~fsp~s~~~~l~sgs~D  116 (751)
                      ...-....+++|+++|+++++       +..++.|.+||..+++......   .++...+.++++.|+. +.++++ ...
T Consensus        14 ~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~-g~l~v~-~~~   91 (314)
T 1pjx_A           14 TEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDA-NQLFVA-DMR   91 (314)
T ss_dssp             ECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSS-SEEEEE-ETT
T ss_pred             hccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCC-CcEEEE-ECC
Confidence            444456789999999998888       6778999999988776543321   1355779999999873 344444 444


Q ss_pred             CcEEEEECCCCCCCCCCCCCCCCcee-ec----ccCCceeEEEEecCCCCEEEEEeCC---------------CcEEEEe
Q 004468          117 AEVRLFNLSRFSGRGLDDNAITPSAL-YQ----CHTRRVKKLAVEVGNPHVVWSASED---------------GTLRQHD  176 (751)
Q Consensus       117 g~V~vwd~~~~~~~~~~~~~~~~~~~-~~----~h~~~V~~l~~sp~~~~~l~s~s~D---------------g~I~iwD  176 (751)
                      ..|.+||.. +..          ... ..    .....+.++++.+ +++++++...+               +.|..||
T Consensus        92 ~~l~~~d~~-g~~----------~~~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~  159 (314)
T 1pjx_A           92 LGLLVVQTD-GTF----------EEIAKKDSEGRRMQGCNDCAFDY-EGNLWITAPAGEVAPADYTRSMQEKFGSIYCFT  159 (314)
T ss_dssp             TEEEEEETT-SCE----------EECCSBCTTSCBCBCCCEEEECT-TSCEEEEECBCBCTTSCCCBTTSSSCEEEEEEC
T ss_pred             CCEEEEeCC-CCE----------EEEEeccCCCccccCCcCEEECC-CCCEEEEecCcccccccccccccCCCCeEEEEC
Confidence            578899987 321          111 11    1234588999999 56777776655               4566665


Q ss_pred             cCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEe----CCCCcE-EEEEeCCCeEEEEeCC-CCCC
Q 004468          177 FRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDIS----STRPHL-LLVGGSDAFARLYDRR-MLPP  250 (751)
Q Consensus       177 lr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~s----p~~~~~-l~sgs~D~~IriwD~~-~~~~  250 (751)
                      .. ++.            ..+..              .......++|+    |+ ++. +++...++.|.+||.. ..+.
T Consensus       160 ~~-g~~------------~~~~~--------------~~~~~~~i~~~~~~d~d-g~~l~v~~~~~~~i~~~~~~~~g~~  211 (314)
T 1pjx_A          160 TD-GQM------------IQVDT--------------AFQFPNGIAVRHMNDGR-PYQLIVAETPTKKLWSYDIKGPAKI  211 (314)
T ss_dssp             TT-SCE------------EEEEE--------------EESSEEEEEEEECTTSC-EEEEEEEETTTTEEEEEEEEETTEE
T ss_pred             CC-CCE------------EEecc--------------CCCCcceEEEecccCCC-CCEEEEEECCCCeEEEEECCCCCcc
Confidence            43 220            01110              11235778999    85 544 4555578999999975 2210


Q ss_pred             ccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcceeeeecCCCceeEEeC
Q 004468          251 LTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFT  330 (751)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~~~~~~~~~~~~~~s  330 (751)
                       ..          ...+.  .+  .++....+..++++++|+.+++...++.|++||..++............+..++++
T Consensus       212 -~~----------~~~~~--~~--~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~  276 (314)
T 1pjx_A          212 -EN----------KKVWG--HI--PGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFK  276 (314)
T ss_dssp             -EE----------EEEEE--EC--CCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEEC
T ss_pred             -cc----------ceEEE--EC--CCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEEC
Confidence             00          00000  00  01110137889999999988888889999999998654333333333556677787


Q ss_pred             CCCCCc
Q 004468          331 PTLNGL  336 (751)
Q Consensus       331 p~~~~~  336 (751)
                      |+.+.+
T Consensus       277 ~dg~~l  282 (314)
T 1pjx_A          277 PQTKTI  282 (314)
T ss_dssp             TTSSEE
T ss_pred             CCCCEE
Confidence            776533

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=98.99  E-value=1.1e-07  Score=101.68  Aligned_cols=254  Identities=10%  Similarity=0.073  Sum_probs=153.3

Q ss_pred             hccccccEEeccCCCcEEEEEECCCCCEEEEEe----------CCCcEEEEeCCCCeEEEEecccC------CcceEEEE
Q 004468           37 VRRLSQERELEGHQGCVNAISWNSKGSLLISGS----------DDTHINVWSYSSRKLLHSIETGH------SANVFCTK  100 (751)
Q Consensus        37 i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs----------~Dg~I~IWd~~~~~~~~~l~~~h------~~~V~~v~  100 (751)
                      ..+++.+.++..-..+ . +.++|||++|..++          .++.|.+||..+++.+..+..+.      ......+.
T Consensus        66 ~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a  143 (386)
T 3sjl_D           66 GEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTS  143 (386)
T ss_dssp             TTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEE
T ss_pred             CCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEE
Confidence            4456667777655555 4 99999999887765          36789999999999888874332      22466799


Q ss_pred             EecCCCCcEEEEEEC--CCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecC
Q 004468          101 FVPETSDELVVSGAG--DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFR  178 (751)
Q Consensus       101 fsp~s~~~~l~sgs~--Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr  178 (751)
                      |+|+  |++++.+..  ++.|.|+|+.+.          +.+.++.-. +   +..+.|.+.+.|++.+.||++.+.++.
T Consensus       144 ~spD--Gk~lyVan~~~~~~VsVID~~t~----------~vv~tI~v~-g---~~~~~P~g~~~~~~~~~DG~~~~v~~~  207 (386)
T 3sjl_D          144 LTPD--GKTLLFYQFSPAPAVGVVDLEGK----------AFKRMLDVP-D---CYHIFPTAPDTFFMHCRDGSLAKVAFG  207 (386)
T ss_dssp             ECTT--SSEEEEEECSSSCEEEEEETTTT----------EEEEEEECC-S---EEEEEEEETTEEEEEETTSCEEEEECC
T ss_pred             EcCC--CCEEEEEEcCCCCeEEEEECCCC----------cEEEEEECC-C---cceeecCCCceeEEECCCCCEEEEECC
Confidence            9999  788877763  689999999974          334444321 1   112235456677788888888888887


Q ss_pred             C-CCCC----CCCCCCC------C----ccceEEEecccCceecccCCCC--------------------CccceEEEEE
Q 004468          179 Q-GSSC----PPAGSSH------Q----ECRNILLDLRCGAKRSLADPPK--------------------QTLSLKSCDI  223 (751)
Q Consensus       179 ~-~~~~----~~~~~~~------~----~~~~~l~~~~~~~~~~~~~~~~--------------------~~~~v~~i~~  223 (751)
                      . ++..    .......      .    .....+|....+....+.....                    .......+++
T Consensus       208 ~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~  287 (386)
T 3sjl_D          208 TEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAY  287 (386)
T ss_dssp             SSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEE
T ss_pred             CCCeEEEeecceeccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeE
Confidence            6 3320    0110000      0    0011222211121111100000                    0112334777


Q ss_pred             eCCCCcEEEEEeC----------CCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCC-
Q 004468          224 SSTRPHLLLVGGS----------DAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGE-  292 (751)
Q Consensus       224 sp~~~~~l~sgs~----------D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~-  292 (751)
                      +|+. +.+.+...          .+.|.++|+.+.+.+..+..                      ...+.+|+|++|++ 
T Consensus       288 ~~~~-~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~v----------------------g~~~~~lavs~D~~~  344 (386)
T 3sjl_D          288 HRAL-DRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM----------------------GHEIDSINVSQDEKP  344 (386)
T ss_dssp             ETTT-TEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE----------------------EEEECEEEECSSSSC
T ss_pred             CCCC-CeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEEC----------------------CCCcceEEECCCCCe
Confidence            8864 44444332          25799999998775443310                      11478999999997 


Q ss_pred             EEEEE-eCCCcEEEEECCCCCcceeeeecCCCceeEEeCCC
Q 004468          293 EVLLS-YSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPT  332 (751)
Q Consensus       293 ~Ll~~-s~d~~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp~  332 (751)
                      +|+++ ..++.|.++|..+++ ..........+..+.++++
T Consensus       345 ~ly~tn~~~~~VsViD~~t~k-~~~~i~~~~~p~~l~~s~d  384 (386)
T 3sjl_D          345 LLYALSTGDKTLYIHDAESGE-ELRSVNQLGHGPQVITTAD  384 (386)
T ss_dssp             EEEEEETTTTEEEEEETTTCC-EEEEECCCCSSCCEEEECC
T ss_pred             EEEEEcCCCCeEEEEECCCCc-EEEEecCCCCCceeEECCc
Confidence            66664 458999999999965 3344444555666666665

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=98.96  E-value=1.1e-07  Score=103.73  Aligned_cols=216  Identities=8%  Similarity=0.021  Sum_probs=138.8

Q ss_pred             CcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCC--cEEEEECCCCC
Q 004468           51 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA--EVRLFNLSRFS  128 (751)
Q Consensus        51 ~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg--~V~vwd~~~~~  128 (751)
                      .....|+|+++|+++++...++.|++||..++...... ... .... ++|+|+  ++.|+++..++  .|.+|+.....
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~-~~~-~~~~-ia~~~~--g~~l~~~d~~~~~~I~~~d~~~~~  205 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVH-PGF-KGGK-PAVTKD--KQRVYSIGWEGTHTVYVYMKASGW  205 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEE-ETC-CBCB-CEECTT--SSEEEEEBSSTTCEEEEEEGGGTT
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEee-ccC-CCCc-eeEecC--CCcEEEEecCCCceEEEEEcCCCc
Confidence            46889999999998888888899999999887766554 332 2233 999999  78888887766  78888876421


Q ss_pred             CCCCCCCCCCCceee----cccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCc
Q 004468          129 GRGLDDNAITPSALY----QCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGA  204 (751)
Q Consensus       129 ~~~~~~~~~~~~~~~----~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~  204 (751)
                                ....+    ......+.+++++|+++.+++ +..++.|+.||..++..            ..+.....  
T Consensus       206 ----------~~~~~g~~~~~~~~~p~~iav~p~~g~lyv-~d~~~~I~~~d~~~~~~------------~~~~~~~~--  260 (409)
T 3hrp_A          206 ----------APTRIGQLGSTFSGKIGAVALDETEEWLYF-VDSNKNFGRFNVKTQEV------------TLIKQLEL--  260 (409)
T ss_dssp             ----------CEEEEEECCTTSCSCCCBCEECTTSSEEEE-ECTTCEEEEEETTTCCE------------EEEEECCC--
T ss_pred             ----------eeEEeeeccchhcCCcEEEEEeCCCCeEEE-EECCCcEEEEECCCCCE------------EEEecccc--
Confidence                      11222    214566789999996666665 66788999999876531            11110000  


Q ss_pred             eecccCCCCCccc--eEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccce
Q 004468          205 KRSLADPPKQTLS--LKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHL  282 (751)
Q Consensus       205 ~~~~~~~~~~~~~--v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v  282 (751)
                             ......  ...++|+|+++.++++-..++.|+.|+....  +..+........    +... ...... -...
T Consensus       261 -------~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g----~~dg-~~~~~~-~~~P  325 (409)
T 3hrp_A          261 -------SGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKT----VQDG-LREEAL-FAQP  325 (409)
T ss_dssp             -------CSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCS----CBCE-EGGGCB-CSSE
T ss_pred             -------cCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCC----cCCC-cccccE-eCCC
Confidence                   001111  1289999976777888788899999987532  111100000000    0000 000000 1137


Q ss_pred             EEEEEcCCCCEEEEEe-CCCcEEEEECCCC
Q 004468          283 THVTFSPNGEEVLLSY-SGEHVYLMDVNHA  311 (751)
Q Consensus       283 t~v~fspdg~~Ll~~s-~d~~I~lwdl~~~  311 (751)
                      ..++|+|+|+.+++-+ .++.|+.|++.++
T Consensus       326 ~gia~d~dG~lyvad~~~~~~I~~~~~~~G  355 (409)
T 3hrp_A          326 NGMTVDEDGNFYIVDGFKGYCLRKLDILDG  355 (409)
T ss_dssp             EEEEECTTCCEEEEETTTTCEEEEEETTTT
T ss_pred             eEEEEeCCCCEEEEeCCCCCEEEEEECCCC
Confidence            8999999999878877 8999999998764

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=98.96  E-value=2.6e-08  Score=105.57  Aligned_cols=181  Identities=8%  Similarity=0.014  Sum_probs=115.7

Q ss_pred             EEEEEECCCCCEEEEEeCC---------------------------CcEEEEeCCCCeEEEEecccCCcceEEEEEecCC
Q 004468           53 VNAISWNSKGSLLISGSDD---------------------------THINVWSYSSRKLLHSIETGHSANVFCTKFVPET  105 (751)
Q Consensus        53 V~~l~~s~dg~~LaSgs~D---------------------------g~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s  105 (751)
                      |..+.|+|||+.|+.++.+                           ..|.+||+.+++.+..+ .. . .+..+.|+|+ 
T Consensus       106 ~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l-~~-~-~~~~~~~spd-  181 (347)
T 2gop_A          106 IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEF-EK-P-RFSSGIWHRD-  181 (347)
T ss_dssp             EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEE-EE-E-TTCEEEEETT-
T ss_pred             ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeee-cC-C-CcccccCCCC-
Confidence            9999999999999988742                           57999999988774555 33 3 7899999999 


Q ss_pred             CCcEEEEEECCC-------cEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCC--------C
Q 004468          106 SDELVVSGAGDA-------EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED--------G  170 (751)
Q Consensus       106 ~~~~l~sgs~Dg-------~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~D--------g  170 (751)
                       + +++++..+.       ...||.+..+          + ...+..+ ..+..+  +| +++.|+.++.+        .
T Consensus       182 -g-~~~~~~~~~~~~~~~~~~~l~~~d~~----------~-~~~l~~~-~~~~~~--sp-dg~~l~~~~~~~~~~~~~~~  244 (347)
T 2gop_A          182 -K-IVVNVPHREIIPQYFKFWDIYIWEDG----------K-EEKMFEK-VSFYAV--DS-DGERILLYGKPEKKYMSEHN  244 (347)
T ss_dssp             -E-EEEEEECCCSSCCSSCCEEEEEEETT----------E-EEEEEEE-ESEEEE--EE-CSSCEEEEECCSSSCCCSSC
T ss_pred             -e-EEEEEecccccccccccccEEEeCCC----------c-eEEeccC-cceeeE--CC-CCCEEEEEEccccCCccccc
Confidence             7 777776652       4455555421          1 2333334 445444  88 55555555543        3


Q ss_pred             cEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEE-EEEeCCCCcEEEEEeCCCeEEEEeCCCCC
Q 004468          171 TLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKS-CDISSTRPHLLLVGGSDAFARLYDRRMLP  249 (751)
Q Consensus       171 ~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~-i~~sp~~~~~l~sgs~D~~IriwD~~~~~  249 (751)
                      .|.+||  +++..                       .+  ...+...+.. +.|+ + + ++++++.++.++|| +..++
T Consensus       245 ~l~~~d--~~~~~-----------------------~l--~~~~~~~~~~~~~~s-d-g-~~~~~~~~~~~~l~-~~~g~  293 (347)
T 2gop_A          245 KLYIYD--GKEVM-----------------------GI--LDEVDRGVGQAKIKD-G-K-VYFTLFEEGSVNLY-IWDGE  293 (347)
T ss_dssp             EEEEEC--SSCEE-----------------------ES--STTCCSEEEEEEEET-T-E-EEEEEEETTEEEEE-EESSS
T ss_pred             eEEEEC--CCceE-----------------------ec--cccCCcccCCccEEc-C-c-EEEEEecCCcEEEE-EcCCc
Confidence            577777  32210                       01  1123445665 8898 4 5 88999999999999 86322


Q ss_pred             CccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcE-EEEECC
Q 004468          250 PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHV-YLMDVN  309 (751)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I-~lwdl~  309 (751)
                      .              ....       .+ ...|.+++|+|  ..+++++.++.. .||.++
T Consensus       294 ~--------------~~~~-------~~-~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~  330 (347)
T 2gop_A          294 I--------------KPIA-------KG-RHWIMGFDVDE--IVVYLKETATRLRELFTWD  330 (347)
T ss_dssp             E--------------EEEE-------CS-SSEEEEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred             e--------------EEEe-------cC-CCeEEeeeeeC--cEEEEEcCCCChHHheEeC
Confidence            1              0110       01 12489999999  677777766554 666665

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=98.94  E-value=3e-07  Score=94.73  Aligned_cols=201  Identities=6%  Similarity=-0.008  Sum_probs=137.7

Q ss_pred             cCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCC
Q 004468           48 GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRF  127 (751)
Q Consensus        48 gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~  127 (751)
                      .+...+.+|+++++|.++++...++.|..||.. ++............+.++++.|+  +.++++...++.|.+||.. +
T Consensus        54 ~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~--g~l~v~~~~~~~i~~~d~~-g  129 (299)
T 2z2n_A           54 TPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GIIKEYTLPNPDSAPYGITEGPN--GDIWFTEMNGNRIGRITDD-G  129 (299)
T ss_dssp             STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTT--SCEEEEETTTTEEEEECTT-C
T ss_pred             cccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcEEEEeCCCcCCCceeeEECCC--CCEEEEecCCceEEEECCC-C
Confidence            355789999999999999888878899999986 43322111235567999999998  7888887778899999983 2


Q ss_pred             CCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceec
Q 004468          128 SGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRS  207 (751)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  207 (751)
                      ..         .......+...+..+++.+ ++.++++...++.|..||. +++..             .+..       
T Consensus       130 ~~---------~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~-~g~~~-------------~~~~-------  178 (299)
T 2z2n_A          130 KI---------REYELPNKGSYPSFITLGS-DNALWFTENQNNAIGRITE-SGDIT-------------EFKI-------  178 (299)
T ss_dssp             CE---------EEEECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEECT-TCCEE-------------EEEC-------
T ss_pred             CE---------EEecCCCCCCCCceEEEcC-CCCEEEEeCCCCEEEEEcC-CCcEE-------------EeeC-------
Confidence            10         0112223456789999998 5677777777789999998 54311             0100       


Q ss_pred             ccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEE
Q 004468          208 LADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTF  287 (751)
Q Consensus       208 ~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~f  287 (751)
                          +.....+.++++.++ ++++++...++.|.+||. +.+.. .+            ..+      .. ...+.++++
T Consensus       179 ----~~~~~~~~~i~~~~~-g~l~v~~~~~~~i~~~~~-~g~~~-~~------------~~~------~~-~~~~~~i~~  232 (299)
T 2z2n_A          179 ----PTPASGPVGITKGND-DALWFVEIIGNKIGRITT-SGEIT-EF------------KIP------TP-NARPHAITA  232 (299)
T ss_dssp             ----SSTTCCEEEEEECTT-SSEEEEETTTTEEEEECT-TCCEE-EE------------ECS------ST-TCCEEEEEE
T ss_pred             ----CCCCCcceeEEECCC-CCEEEEccCCceEEEECC-CCcEE-EE------------ECC------CC-CCCceeEEE
Confidence                112345778999995 677777667889999998 44311 00            000      01 114889999


Q ss_pred             cCCCCEEEEEeCCCcEEEEECC
Q 004468          288 SPNGEEVLLSYSGEHVYLMDVN  309 (751)
Q Consensus       288 spdg~~Ll~~s~d~~I~lwdl~  309 (751)
                      +++|+.+++...++.|.+||..
T Consensus       233 ~~~g~l~v~~~~~~~i~~~d~~  254 (299)
T 2z2n_A          233 GAGIDLWFTEWGANKIGRLTSN  254 (299)
T ss_dssp             CSTTCEEEEETTTTEEEEEETT
T ss_pred             CCCCCEEEeccCCceEEEECCC
Confidence            9999966666678999999983

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=98.93  E-value=7.7e-08  Score=109.19  Aligned_cols=205  Identities=12%  Similarity=0.056  Sum_probs=138.6

Q ss_pred             CCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCC
Q 004468           60 SKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITP  139 (751)
Q Consensus        60 ~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~  139 (751)
                      +.+.++++...+++|.++|..+++.+..+..+  ..+..+.|+|+  ++++++++.|+.|.+||+...+.        +.
T Consensus       165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g--~~p~~v~~SpD--Gr~lyv~~~dg~V~viD~~~~t~--------~~  232 (567)
T 1qks_A          165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDTG--YAVHISRLSAS--GRYLFVIGRDGKVNMIDLWMKEP--------TT  232 (567)
T ss_dssp             GGGEEEEEETTTTEEEEEETTTCCEEEEEECS--SCEEEEEECTT--SCEEEEEETTSEEEEEETTSSSC--------CE
T ss_pred             CCceEEEEeCCCCeEEEEECCCCeEEEEEeCC--CCccceEECCC--CCEEEEEcCCCeEEEEECCCCCC--------cE
Confidence            44567788889999999999999999888433  35779999999  89999999999999999951111        33


Q ss_pred             ceeecccCCceeEEEEe----cCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCC-
Q 004468          140 SALYQCHTRRVKKLAVE----VGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQ-  214 (751)
Q Consensus       140 ~~~~~~h~~~V~~l~~s----p~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-  214 (751)
                      +..+... .....++|+    |++..++++.-.+++|.++|..+.+...           . +..  +... ......+ 
T Consensus       233 v~~i~~G-~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~-----------~-i~~--~~~~-~~~~~~~p  296 (567)
T 1qks_A          233 VAEIKIG-SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKK-----------I-QST--RGMT-YDEQEYHP  296 (567)
T ss_dssp             EEEEECC-SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEE-----------E-EEC--CEEC-TTTCCEES
T ss_pred             eEEEecC-CCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEE-----------E-Eec--cccc-cccccccC
Confidence            4455432 346789999    6554455555667999999987765321           0 110  0000 0000001 


Q ss_pred             ccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEE
Q 004468          215 TLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEV  294 (751)
Q Consensus       215 ~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~L  294 (751)
                      ...+..+.++++++.+++....+|.|.++|....+.+.           +...     . .   ......+.|+|+|++|
T Consensus       297 ~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~-----------v~~i-----~-~---~~~~~d~~~~pdgr~~  356 (567)
T 1qks_A          297 EPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLK-----------TTEI-----S-A---ERFLHDGGLDGSHRYF  356 (567)
T ss_dssp             CCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEE-----------EEEE-----E-C---CSSEEEEEECTTSCEE
T ss_pred             CCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccce-----------eeee-----e-c---cccccCceECCCCCEE
Confidence            12567788888767777777788999999987543111           0000     0 0   1136688999999998


Q ss_pred             EEEe-CCCcEEEEECCCCC
Q 004468          295 LLSY-SGEHVYLMDVNHAG  312 (751)
Q Consensus       295 l~~s-~d~~I~lwdl~~~~  312 (751)
                      +++. .++.|.++|+.+++
T Consensus       357 ~va~~~sn~V~ViD~~t~k  375 (567)
T 1qks_A          357 ITAANARNKLVVIDTKEGK  375 (567)
T ss_dssp             EEEEGGGTEEEEEETTTTE
T ss_pred             EEEeCCCCeEEEEECCCCc
Confidence            8766 57899999999864

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=98.92  E-value=1.8e-08  Score=118.06  Aligned_cols=200  Identities=11%  Similarity=0.054  Sum_probs=131.5

Q ss_pred             EEEEECCCCCEEEEEeCCCc-------------EEEEeCCCCe----EEEEecccCCcceEEEEEecCCCCcEEEEEECC
Q 004468           54 NAISWNSKGSLLISGSDDTH-------------INVWSYSSRK----LLHSIETGHSANVFCTKFVPETSDELVVSGAGD  116 (751)
Q Consensus        54 ~~l~~s~dg~~LaSgs~Dg~-------------I~IWd~~~~~----~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~D  116 (751)
                      ..++|+|||+.|+.++.|..             |++|++.++.    ++... ..|...+.++.|+|+  |++|+.++.+
T Consensus       171 ~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~-~~~~~~~~~~~~SpD--G~~l~~~~~~  247 (695)
T 2bkl_A          171 ATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHER-TGDPTTFLQSDLSRD--GKYLFVYILR  247 (695)
T ss_dssp             CCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECC-CCCTTCEEEEEECTT--SCCEEEEEEE
T ss_pred             cceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEec-CCCCEEEEEEEECCC--CCEEEEEEeC
Confidence            67999999999999999877             9999998775    33333 456678999999999  7888777666


Q ss_pred             C----cEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEe---CCCcEEEEecCCCCCCCCCCCC
Q 004468          117 A----EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSAS---EDGTLRQHDFRQGSSCPPAGSS  189 (751)
Q Consensus       117 g----~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s---~Dg~I~iwDlr~~~~~~~~~~~  189 (751)
                      +    .|.+|+...           .....+..+...+....+ +++. +++++.   .++.|.+||+.++...      
T Consensus       248 ~~~~~~l~~~~~~~-----------~~~~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~------  308 (695)
T 2bkl_A          248 GWSENDVYWKRPGE-----------KDFRLLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARA------  308 (695)
T ss_dssp             TTTEEEEEEECTTC-----------SSCEEEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGG------
T ss_pred             CCCceEEEEEcCCC-----------CceEEeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCcc------
Confidence            5    566665432           124455556666667767 5455 665554   3588999998765310      


Q ss_pred             CCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCC-CCCccccCCCCCCCCcccccc
Q 004468          190 HQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM-LPPLTSCQKRMSPPPCVNYFC  268 (751)
Q Consensus       190 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~-~~~~~~~~~~~~~~~~~~~~~  268 (751)
                        .. ..++.            ......+..++|+  ++.++++...|+..+||.+.. +...             +.+ 
T Consensus       309 --~~-~~l~~------------~~~~~~l~~~~~~--~~~lv~~~~~dg~~~l~~~~~~g~~~-------------~~l-  357 (695)
T 2bkl_A          309 --SW-KEIVP------------EDSSASLLSVSIV--GGHLSLEYLKDATSEVRVATLKGKPV-------------RTV-  357 (695)
T ss_dssp             --GC-EEEEC------------CCSSCEEEEEEEE--TTEEEEEEEETTEEEEEEEETTCCEE-------------EEC-
T ss_pred             --CC-eEEec------------CCCCCeEEEEEEE--CCEEEEEEEECCEEEEEEEeCCCCee-------------EEe-
Confidence              00 11110            0113456778887  467899999999998886642 2111             111 


Q ss_pred             ccccccCCccccceEEEEEcCCCCEEEEEeC----CCcEEEEECCCCC
Q 004468          269 PMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS----GEHVYLMDVNHAG  312 (751)
Q Consensus       269 ~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~----d~~I~lwdl~~~~  312 (751)
                            ..+....+..++++|+++.|+....    .+.|++||+.++.
T Consensus       358 ------~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~  399 (695)
T 2bkl_A          358 ------QLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGK  399 (695)
T ss_dssp             ------CCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred             ------cCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence                  0011123677889999987775443    4789999998865

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=98.92  E-value=1.6e-08  Score=118.57  Aligned_cols=208  Identities=15%  Similarity=0.109  Sum_probs=127.8

Q ss_pred             ccCCCcEEEEEECCCCCEEEE-----EeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCc---
Q 004468           47 EGHQGCVNAISWNSKGSLLIS-----GSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAE---  118 (751)
Q Consensus        47 ~gH~~~V~~l~~s~dg~~LaS-----gs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~---  118 (751)
                      ++|...|..++|||||++||-     |+.+.+|+|||+.+++.+.....  ......++|+ +  ++.|+.++.+..   
T Consensus       125 ~~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~--~~k~~~~~Ws-D--g~~l~y~~~~~~~~~  199 (693)
T 3iuj_A          125 PDGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLK--DVKFSGISWL-G--NEGFFYSSYDKPDGS  199 (693)
T ss_dssp             TTSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEE--EEESCCCEEE-T--TTEEEEEESSCCC--
T ss_pred             CCCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccC--CceeccEEEe-C--CCEEEEEEecCcccc
Confidence            346667899999999999983     44456799999999886543211  1113578899 8  788888877743   


Q ss_pred             ----------EEEEECCCCCCCCCCCCCCCCceeecc-cCCceeEEEEecCCCCEEEEEeCC---CcEEEEecCCCCCCC
Q 004468          119 ----------VRLFNLSRFSGRGLDDNAITPSALYQC-HTRRVKKLAVEVGNPHVVWSASED---GTLRQHDFRQGSSCP  184 (751)
Q Consensus       119 ----------V~vwd~~~~~~~~~~~~~~~~~~~~~~-h~~~V~~l~~sp~~~~~l~s~s~D---g~I~iwDlr~~~~~~  184 (751)
                                |++|++.+.....      .++..... |...+..+.|+|++..++++.+.+   ..|+++|+.++... 
T Consensus       200 ~~~~~~~~~~v~~~~lgt~~~~~------~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~-  272 (693)
T 3iuj_A          200 ELSARTDQHKVYFHRLGTAQEDD------RLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAP-  272 (693)
T ss_dssp             -----CCCCEEEEEETTSCGGGC------EEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCC-
T ss_pred             cccccCCCcEEEEEECCCCcccc------eEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCc-
Confidence                      9999998653211      12233333 555678899999554455555433   47899998775311 


Q ss_pred             CCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCC---CeEEEEeCCCCCCccccCCCCCCC
Q 004468          185 PAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD---AFARLYDRRMLPPLTSCQKRMSPP  261 (751)
Q Consensus       185 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D---~~IriwD~~~~~~~~~~~~~~~~~  261 (751)
                               ...+..              +....... ++++++.+++++..+   +.|..+|+.+....          
T Consensus       273 ---------~~~l~~--------------~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~----------  318 (693)
T 3iuj_A          273 ---------LLTVQG--------------DLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPA----------  318 (693)
T ss_dssp             ---------CEEEEC--------------SSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGG----------
T ss_pred             ---------eEEEeC--------------CCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCcc----------
Confidence                     011110              11122222 556455555555544   67889998764320          


Q ss_pred             CccccccccccccCCccccceEEEEEcCCCCEEEEEeCCC---cEEEEECCCC
Q 004468          262 PCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGE---HVYLMDVNHA  311 (751)
Q Consensus       262 ~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~---~I~lwdl~~~  311 (751)
                       ..+.+.+       +.. .+.  .|++++++|+....++   .|++||+.++
T Consensus       319 -~~~~l~~-------~~~-~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~  360 (693)
T 3iuj_A          319 -HWRDLIP-------ERQ-QVL--TVHSGSGYLFAEYMVDATARVEQFDYEGK  360 (693)
T ss_dssp             -GCEEEEC-------CCS-SCE--EEEEETTEEEEEEEETTEEEEEEECTTSC
T ss_pred             -ccEEEec-------CCC-CEE--EEEEECCEEEEEEEECCeeEEEEEECCCC
Confidence             0111211       111 133  8999999988877644   7999998864

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=98.90  E-value=1.1e-07  Score=99.15  Aligned_cols=206  Identities=11%  Similarity=0.113  Sum_probs=132.6

Q ss_pred             cCCCcEEEEEECCC-CCEEEEEeCCCcEEEEeCCCCeEEEE-ecc--c-CCcceEEEEEecCCCCcEEEEEECC------
Q 004468           48 GHQGCVNAISWNSK-GSLLISGSDDTHINVWSYSSRKLLHS-IET--G-HSANVFCTKFVPETSDELVVSGAGD------  116 (751)
Q Consensus        48 gH~~~V~~l~~s~d-g~~LaSgs~Dg~I~IWd~~~~~~~~~-l~~--~-h~~~V~~v~fsp~s~~~~l~sgs~D------  116 (751)
                      ++...+.++.++++ |+++++... ..|.+||.. ++.... ...  + ....+.++++.|+  |.++++...+      
T Consensus        68 ~~~~~~~~i~~~~~~g~l~v~~~~-~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~--g~l~v~~~~~~~~~~~  143 (314)
T 1pjx_A           68 GYGGIPAGCQCDRDANQLFVADMR-LGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYE--GNLWITAPAGEVAPAD  143 (314)
T ss_dssp             TEECCEEEEEECSSSSEEEEEETT-TEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTT--SCEEEEECBCBCTTSC
T ss_pred             CCCCCCceEEEecCCCcEEEEECC-CCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCC--CCEEEEecCccccccc
Confidence            36678999999999 776666554 479999988 665433 211  1 2245889999998  7888877655      


Q ss_pred             ---------CcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEe----cCCCCEEEEEeCCCcEEEEecC-CCCC
Q 004468          117 ---------AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVE----VGNPHVVWSASEDGTLRQHDFR-QGSS  182 (751)
Q Consensus       117 ---------g~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s----p~~~~~l~s~s~Dg~I~iwDlr-~~~~  182 (751)
                               +.|..||.. +          + ...+..+......++|+    |++..++++...++.|.+||+. .++.
T Consensus       144 ~~~~~~~~~~~l~~~~~~-g----------~-~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~  211 (314)
T 1pjx_A          144 YTRSMQEKFGSIYCFTTD-G----------Q-MIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKI  211 (314)
T ss_dssp             CCBTTSSSCEEEEEECTT-S----------C-EEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEE
T ss_pred             ccccccCCCCeEEEECCC-C----------C-EEEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCcc
Confidence                     456666554 1          1 22223344557889999    8443455666678999999976 2210


Q ss_pred             CCCCCCCCCccceEEEecccCceecccCCCCCc-cceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCC
Q 004468          183 CPPAGSSHQECRNILLDLRCGAKRSLADPPKQT-LSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPP  261 (751)
Q Consensus       183 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~  261 (751)
                               .....+..           .+.+. ..+..++++++ ++++++...++.|.+||..+++.+..+.      
T Consensus       212 ---------~~~~~~~~-----------~~~~~~~~p~~i~~d~~-G~l~v~~~~~~~i~~~d~~~g~~~~~~~------  264 (314)
T 1pjx_A          212 ---------ENKKVWGH-----------IPGTHEGGADGMDFDED-NNLLVANWGSSHIEVFGPDGGQPKMRIR------  264 (314)
T ss_dssp             ---------EEEEEEEE-----------CCCCSSCEEEEEEEBTT-CCEEEEEETTTEEEEECTTCBSCSEEEE------
T ss_pred             ---------ccceEEEE-----------CCCCCCCCCCceEECCC-CCEEEEEcCCCEEEEEcCCCCcEeEEEe------
Confidence                     00011111           11122 35678999994 6888887788999999987544322110      


Q ss_pred             CccccccccccccCCccccceEEEEEcCCCCEEEEEe-CCCcEEEEECCCC
Q 004468          262 PCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSY-SGEHVYLMDVNHA  311 (751)
Q Consensus       262 ~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s-~d~~I~lwdl~~~  311 (751)
                                    .+. ..+++++|+|+|++|++++ .++.|..|++...
T Consensus       265 --------------~~~-~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~  300 (314)
T 1pjx_A          265 --------------CPF-EKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN  300 (314)
T ss_dssp             --------------CSS-SCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred             --------------CCC-CCceeEEECCCCCEEEEEeCCCCeEEEEeCCCC
Confidence                          011 1489999999999666554 5689999998763

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=98.87  E-value=6.4e-07  Score=93.06  Aligned_cols=238  Identities=12%  Similarity=0.068  Sum_probs=144.9

Q ss_pred             EEeccCCCcEEEEEECCC-CCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEE
Q 004468           44 RELEGHQGCVNAISWNSK-GSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLF  122 (751)
Q Consensus        44 ~~L~gH~~~V~~l~~s~d-g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vw  122 (751)
                      ..+..+..-..+..|+++ +.++++...++.|..||..++... .+  .....+.++++.|+  ++++++.  ++.|.+|
T Consensus         6 ~~~~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~--~~~~~~~~i~~~~d--G~l~v~~--~~~l~~~   78 (297)
T 3g4e_A            6 CVLPENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RV--TMDAPVSSVALRQS--GGYVATI--GTKFCAL   78 (297)
T ss_dssp             EEECCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EE--ECSSCEEEEEEBTT--SSEEEEE--TTEEEEE
T ss_pred             EEeccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EE--eCCCceEEEEECCC--CCEEEEE--CCeEEEE
Confidence            344555556678999995 557777778899999999877653 33  24567999999999  7765553  5789999


Q ss_pred             ECCCCCCCCCCCCCCCCceeec--ccCCceeEEEEecCCCCEEEEEeCC---------CcEEEEecCCCCCCCCCCCCCC
Q 004468          123 NLSRFSGRGLDDNAITPSALYQ--CHTRRVKKLAVEVGNPHVVWSASED---------GTLRQHDFRQGSSCPPAGSSHQ  191 (751)
Q Consensus       123 d~~~~~~~~~~~~~~~~~~~~~--~h~~~V~~l~~sp~~~~~l~s~s~D---------g~I~iwDlr~~~~~~~~~~~~~  191 (751)
                      |..++..        ..+....  .....++.+++.| +++++++...+         ....+|.+......        
T Consensus        79 d~~~g~~--------~~~~~~~~~~~~~~~~di~~d~-dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~--------  141 (297)
T 3g4e_A           79 NWKEQSA--------VVLATVDNDKKNNRFNDGKVDP-AGRYFAGTMAEETAPAVLERHQGALYSLFPDHHV--------  141 (297)
T ss_dssp             ETTTTEE--------EEEEECCTTCSSEEEEEEEECT-TSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCE--------
T ss_pred             ECCCCcE--------EEEEecCCCCCCCCCCCEEECC-CCCEEEecCCcccccccccCCCcEEEEEECCCCE--------
Confidence            9875321        1111111  1234578899999 56666554322         22344444321100        


Q ss_pred             ccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCC--CCCCccccCCCCCCCCccccccc
Q 004468          192 ECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRR--MLPPLTSCQKRMSPPPCVNYFCP  269 (751)
Q Consensus       192 ~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~--~~~~~~~~~~~~~~~~~~~~~~~  269 (751)
                         ..+..              .....+.++|+|++..++++.+.++.|.+||+.  ++....           .+.+..
T Consensus       142 ---~~~~~--------------~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~-----------~~~~~~  193 (297)
T 3g4e_A          142 ---KKYFD--------------QVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISN-----------RRSVYK  193 (297)
T ss_dssp             ---EEEEE--------------EESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEE-----------EEEEEE
T ss_pred             ---EEEee--------------ccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccC-----------cEEEEE
Confidence               01110              123457899999643455666678899999873  332100           000100


Q ss_pred             cccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcceeeeecCCCceeEEeC-CCCCCccc
Q 004468          270 MHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFT-PTLNGLEL  338 (751)
Q Consensus       270 ~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~~~~~~~~~~~~~~s-p~~~~~~~  338 (751)
                        +.   .....+..++++++|+..++...++.|.+||..+++...........+..++|. |+.+.+.+
T Consensus       194 --~~---~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~v  258 (297)
T 3g4e_A          194 --LE---KEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEMYV  258 (297)
T ss_dssp             --CC---GGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBEEEEEEESGGGCEEEE
T ss_pred             --CC---CCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCceEEEEeCCCCCEEEE
Confidence              00   001247889999999887777788899999998766444444444567778887 66555443

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=98.87  E-value=9.7e-07  Score=90.88  Aligned_cols=202  Identities=7%  Similarity=-0.022  Sum_probs=137.3

Q ss_pred             ccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCC
Q 004468           47 EGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSR  126 (751)
Q Consensus        47 ~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~  126 (751)
                      ..+...+.+|++.++|+++++...++.|.+||.. ++............+.++++.++  +.++++...++.|..+|.. 
T Consensus        58 ~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~--g~l~v~~~~~~~i~~~~~~-  133 (300)
T 2qc5_A           58 PTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLN--GDIWFTQLNGDRIGKLTAD-  133 (300)
T ss_dssp             SSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECST--TCEEEEETTTTEEEEECTT-
T ss_pred             CCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECCC--CCEEEEccCCCeEEEECCC-
Confidence            3445689999999999988888778899999988 55432221334567999999988  7888887778899999886 


Q ss_pred             CCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCcee
Q 004468          127 FSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKR  206 (751)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~  206 (751)
                      +..         ....+......+..+++.+ +++++++...++.|..||. +++..             .+.       
T Consensus       134 g~~---------~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~i~~~~~-~g~~~-------------~~~-------  182 (300)
T 2qc5_A          134 GTI---------YEYDLPNKGSYPAFITLGS-DNALWFTENQNNSIGRITN-TGKLE-------------EYP-------  182 (300)
T ss_dssp             SCE---------EEEECSSTTCCEEEEEECT-TSSEEEEETTTTEEEEECT-TCCEE-------------EEE-------
T ss_pred             CCE---------EEccCCCCCCCceeEEECC-CCCEEEEecCCCeEEEECC-CCcEE-------------Eee-------
Confidence            211         0111223456788999998 5677767666789999987 43210             011       


Q ss_pred             cccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEE
Q 004468          207 SLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVT  286 (751)
Q Consensus       207 ~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~  286 (751)
                          .+.....+..+++.++ ++++++....+.|.+||. ......             ...+.      . ...+.+++
T Consensus       183 ----~~~~~~~~~~i~~d~~-g~l~v~~~~~~~i~~~~~-~g~~~~-------------~~~~~------~-~~~~~~i~  236 (300)
T 2qc5_A          183 ----LPTNAAAPVGITSGND-GALWFVEIMGNKIGRITT-TGEISE-------------YDIPT------P-NARPHAIT  236 (300)
T ss_dssp             ----CSSTTCCEEEEEECTT-SSEEEEETTTTEEEEECT-TCCEEE-------------EECSS------T-TCCEEEEE
T ss_pred             ----CCCCCCCcceEEECCC-CCEEEEccCCCEEEEEcC-CCcEEE-------------EECCC------C-CCCceEEE
Confidence                0112345788999994 677777667788999997 322110             00010      1 11478999


Q ss_pred             EcCCCCEEEEEeCCCcEEEEECC
Q 004468          287 FSPNGEEVLLSYSGEHVYLMDVN  309 (751)
Q Consensus       287 fspdg~~Ll~~s~d~~I~lwdl~  309 (751)
                      ++++|+..++...++.|..||..
T Consensus       237 ~d~~g~l~v~~~~~~~i~~~~~~  259 (300)
T 2qc5_A          237 AGKNSEIWFTEWGANQIGRITND  259 (300)
T ss_dssp             ECSTTCEEEEETTTTEEEEECTT
T ss_pred             ECCCCCEEEeccCCCeEEEECCC
Confidence            99999966666677999999984

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=98.86  E-value=8.5e-07  Score=91.30  Aligned_cols=202  Identities=10%  Similarity=0.053  Sum_probs=138.4

Q ss_pred             eccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECC
Q 004468           46 LEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLS  125 (751)
Q Consensus        46 L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~  125 (751)
                      +......+.+|.+.++|+++++...++.|.+||.. ++........+...+.++++.++  +.++++...++.|.+||..
T Consensus        15 ~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~--g~l~v~~~~~~~v~~~d~~   91 (300)
T 2qc5_A           15 LSIPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSL--GDIWFTENGANKIGKLSKK   91 (300)
T ss_dssp             CSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTT--SCEEEEETTTTEEEEECTT
T ss_pred             cCCCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCC--CCEEEEecCCCeEEEECCC
Confidence            34456788999999999998888888999999988 55443222334567999999988  7888877778899999987


Q ss_pred             CCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCce
Q 004468          126 RFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAK  205 (751)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~  205 (751)
                       +..         ....+......+..+++.+ ++.++++...++.|..||.. ++.             ..+..     
T Consensus        92 -g~~---------~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~-g~~-------------~~~~~-----  141 (300)
T 2qc5_A           92 -GGF---------TEYPLPQPDSGPYGITEGL-NGDIWFTQLNGDRIGKLTAD-GTI-------------YEYDL-----  141 (300)
T ss_dssp             -SCE---------EEEECSSTTCCEEEEEECS-TTCEEEEETTTTEEEEECTT-SCE-------------EEEEC-----
T ss_pred             -CCe---------EEecCCCCCCCCccceECC-CCCEEEEccCCCeEEEECCC-CCE-------------EEccC-----
Confidence             211         0112222346788999998 66777777778899999876 331             01110     


Q ss_pred             ecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEE
Q 004468          206 RSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHV  285 (751)
Q Consensus       206 ~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v  285 (751)
                            +.....+..+++.++ ++++++...++.|..||. ..+... +            ..+.      . ...+..+
T Consensus       142 ------~~~~~~~~~i~~d~~-g~l~v~~~~~~~i~~~~~-~g~~~~-~------------~~~~------~-~~~~~~i  193 (300)
T 2qc5_A          142 ------PNKGSYPAFITLGSD-NALWFTENQNNSIGRITN-TGKLEE-Y------------PLPT------N-AAAPVGI  193 (300)
T ss_dssp             ------SSTTCCEEEEEECTT-SSEEEEETTTTEEEEECT-TCCEEE-E------------ECSS------T-TCCEEEE
T ss_pred             ------CCCCCCceeEEECCC-CCEEEEecCCCeEEEECC-CCcEEE-e------------eCCC------C-CCCcceE
Confidence                  112345788999995 676666666789999987 332110 0            0000      1 1147899


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEEC
Q 004468          286 TFSPNGEEVLLSYSGEHVYLMDV  308 (751)
Q Consensus       286 ~fspdg~~Ll~~s~d~~I~lwdl  308 (751)
                      +++++|+..++....+.|.+||.
T Consensus       194 ~~d~~g~l~v~~~~~~~i~~~~~  216 (300)
T 2qc5_A          194 TSGNDGALWFVEIMGNKIGRITT  216 (300)
T ss_dssp             EECTTSSEEEEETTTTEEEEECT
T ss_pred             EECCCCCEEEEccCCCEEEEEcC
Confidence            99999987777767788999998

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.86  E-value=2.6e-07  Score=100.49  Aligned_cols=240  Identities=11%  Similarity=0.079  Sum_probs=144.0

Q ss_pred             hccccccEEeccCCCcEEEEEECCCCCEEEEEe----------CCCcEEEEeCCCCeEEEEeccc------CCcceEEEE
Q 004468           37 VRRLSQERELEGHQGCVNAISWNSKGSLLISGS----------DDTHINVWSYSSRKLLHSIETG------HSANVFCTK  100 (751)
Q Consensus        37 i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs----------~Dg~I~IWd~~~~~~~~~l~~~------h~~~V~~v~  100 (751)
                      ..+++.+.++..-..+  .+.++|||++|..+.          .++.|.++|..+++.+..+..+      .......+.
T Consensus       106 ~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~  183 (426)
T 3c75_H          106 GSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNA  183 (426)
T ss_dssp             TTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSE
T ss_pred             CCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEE
Confidence            4556667777654455  899999999887775          4678999999999988887433      123456789


Q ss_pred             EecCCCCcEEEEEEC--CCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecC
Q 004468          101 FVPETSDELVVSGAG--DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFR  178 (751)
Q Consensus       101 fsp~s~~~~l~sgs~--Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr  178 (751)
                      |+|+  |++++.+..  ++.|.+.|+.+.          +.+..+.-- +   +....|++...+++.+.||++.+.++.
T Consensus       184 ~spD--Gk~lyV~n~~~~~~VsVID~~t~----------kvv~~I~v~-g---~~~~~p~g~~~~v~~~~dG~~~~V~~~  247 (426)
T 3c75_H          184 LTPD--NKNLLFYQFSPAPAVGVVDLEGK----------TFDRMLDVP-D---CYHIFPASPTVFYMNCRDGSLARVDFA  247 (426)
T ss_dssp             ECTT--SSEEEEEECSSSCEEEEEETTTT----------EEEEEEECC-S---EEEEEEEETTEEEEEETTSSEEEEECC
T ss_pred             EcCC--CCEEEEEecCCCCeEEEEECCCC----------eEEEEEEcC-C---ceeeccCCCcEEEEEcCCCCEEEEECC
Confidence            9999  788887764  588999999864          223333321 1   123344444666677777777777774


Q ss_pred             CCCCCC----CCCCC----------CCc----------cceEEEecccCceecccCC-----CC-----CccceEEEEEe
Q 004468          179 QGSSCP----PAGSS----------HQE----------CRNILLDLRCGAKRSLADP-----PK-----QTLSLKSCDIS  224 (751)
Q Consensus       179 ~~~~~~----~~~~~----------~~~----------~~~~l~~~~~~~~~~~~~~-----~~-----~~~~v~~i~~s  224 (751)
                      +++...    .....          ...          ....+++...+....+...     ..     .......++++
T Consensus       248 ~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s  327 (426)
T 3c75_H          248 DGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYH  327 (426)
T ss_dssp             TTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEE
T ss_pred             CCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEc
Confidence            433210    00000          000          1112222222111100000     00     01112236899


Q ss_pred             CCCCcEEEEEe---------CCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCC-EE
Q 004468          225 STRPHLLLVGG---------SDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGE-EV  294 (751)
Q Consensus       225 p~~~~~l~sgs---------~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~-~L  294 (751)
                      |++.+++++..         .++.|.++|..+.+.+..+..                      ......++|+|||+ +|
T Consensus       328 ~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~v----------------------g~~P~gia~spDg~~~l  385 (426)
T 3c75_H          328 RQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIEL----------------------GHEIDSINVSQDAEPLL  385 (426)
T ss_dssp             GGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE----------------------EEEECEEEECCSSSCEE
T ss_pred             CCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEEC----------------------CCCcCeEEEccCCCEEE
Confidence            96444444433         135799999998876544311                      01367899999999 88


Q ss_pred             EEEe-CCCcEEEEECCCCCccee
Q 004468          295 LLSY-SGEHVYLMDVNHAGGRAM  316 (751)
Q Consensus       295 l~~s-~d~~I~lwdl~~~~~~~~  316 (751)
                      ++.. .++.|.++|+.+.+....
T Consensus       386 yv~n~~s~~VsVID~~t~kvv~t  408 (426)
T 3c75_H          386 YALSAGTQTLHIYDAATGEELRS  408 (426)
T ss_dssp             EEEETTTTEEEEEETTTCCEEEE
T ss_pred             EEEcCCCCeEEEEECCCCCEEEE
Confidence            8877 599999999999764433

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=98.84  E-value=1.2e-07  Score=111.91  Aligned_cols=234  Identities=12%  Similarity=0.014  Sum_probs=132.2

Q ss_pred             cCCCcEEEEEECCCCCEEEEEeCC-----CcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCc----
Q 004468           48 GHQGCVNAISWNSKGSLLISGSDD-----THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAE----  118 (751)
Q Consensus        48 gH~~~V~~l~~s~dg~~LaSgs~D-----g~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~----  118 (751)
                      +|...+..++|||||++||.++.+     ..|+|||+.+++.+...  .+...+..++|+|+   +.|+.++.|+.    
T Consensus       160 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~--~~~~~~~~~~wspD---~~l~~~~~~~~~~~~  234 (741)
T 1yr2_A          160 DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADE--LKWVKFSGLAWLGN---DALLYSRFAEPKEGQ  234 (741)
T ss_dssp             ---EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEE--EEEEESCCCEESTT---SEEEEEECCCC----
T ss_pred             CCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCcc--CCCceeccEEEECC---CEEEEEEecCccccc
Confidence            344578899999999999987654     46999999998875432  12223467899998   45555555543    


Q ss_pred             ----------EEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCC-----cEEEEecCCCCCC
Q 004468          119 ----------VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG-----TLRQHDFRQGSSC  183 (751)
Q Consensus       119 ----------V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg-----~I~iwDlr~~~~~  183 (751)
                                |++|++.+.....      ..+.....+...+..+.|+| +++.|+..+.++     .|++||+.++...
T Consensus       235 ~~~~~~~~~~v~~~~lgt~~~~~------~lv~~~~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~~~~l~~~d~~~~~~~  307 (741)
T 1yr2_A          235 AFQALNYNQTVWLHRLGTPQSAD------QPVFATPELPKRGHGASVSS-DGRWVVITSSEGTDPVNTVHVARVTNGKIG  307 (741)
T ss_dssp             ----CCCCCEEEEEETTSCGGGC------EEEECCTTCTTCEEEEEECT-TSCEEEEEEECTTCSCCEEEEEEEETTEEC
T ss_pred             ccccCCCCCEEEEEECCCCchhC------EEEeccCCCCeEEEEEEECC-CCCEEEEEEEccCCCcceEEEEECCCCCCc
Confidence                      8899987542110      11222233444688999999 556666665443     7899998765200


Q ss_pred             CCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeC----CCeEEEEeCCCCCCccccCCCCC
Q 004468          184 PPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGS----DAFARLYDRRMLPPLTSCQKRMS  259 (751)
Q Consensus       184 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~----D~~IriwD~~~~~~~~~~~~~~~  259 (751)
                               +...+..              +...+... ++|+ +..|+..+.    ++.|.+||+....  .       
T Consensus       308 ---------~~~~l~~--------------~~~~~~~~-~~~d-g~~l~~~s~~~~~~~~l~~~d~~~~~--~-------  353 (741)
T 1yr2_A          308 ---------PVTALIP--------------DLKAQWDF-VDGV-GDQLWFVSGDGAPLKKIVRVDLSGST--P-------  353 (741)
T ss_dssp             ---------CCEEEEC--------------SSSSCEEE-EEEE-TTEEEEEECTTCTTCEEEEEECSSSS--C-------
T ss_pred             ---------ccEEecC--------------CCCceEEE-Eecc-CCEEEEEECCCCCCCEEEEEeCCCCc--c-------
Confidence                     0011111              11112222 3464 566666665    3459999987531  0       


Q ss_pred             CCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECC-CCCcceeeee-cCCCceeEEeCCCCCCcc
Q 004468          260 PPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVN-HAGGRAMRYT-VGDASKIMSFTPTLNGLE  337 (751)
Q Consensus       260 ~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~-~~~~~~~~~~-~~~~~~~~~~sp~~~~~~  337 (751)
                         ..+.+.+.      +.. .+..++|+ ++..+++...++..+||.++ +++....... ....+..+.++|+.+.+.
T Consensus       354 ---~~~~l~~~------~~~-~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~  422 (741)
T 1yr2_A          354 ---RFDTVVPE------SKD-NLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAY  422 (741)
T ss_dssp             ---EEEEEECC------CSS-EEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEE
T ss_pred             ---ccEEEecC------CCC-eEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEE
Confidence               01111111      111 36677887 55666777778877766554 2232221111 233445667777666555


Q ss_pred             c
Q 004468          338 L  338 (751)
Q Consensus       338 ~  338 (751)
                      +
T Consensus       423 ~  423 (741)
T 1yr2_A          423 L  423 (741)
T ss_dssp             E
T ss_pred             E
Confidence            3

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=98.79  E-value=5.4e-07  Score=93.58  Aligned_cols=195  Identities=12%  Similarity=0.081  Sum_probs=126.6

Q ss_pred             CCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecc--c-CCcceEEEEEecCCCCcEEEEEECC---------
Q 004468           49 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIET--G-HSANVFCTKFVPETSDELVVSGAGD---------  116 (751)
Q Consensus        49 H~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~--~-h~~~V~~v~fsp~s~~~~l~sgs~D---------  116 (751)
                      +...|.+++|+++|+++++.  +..|.+||..+++.......  + ....++++++.|+  |+++++...+         
T Consensus        52 ~~~~~~~i~~~~dG~l~v~~--~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~d--G~l~~~~~~~~~~~~~~~~  127 (297)
T 3g4e_A           52 MDAPVSSVALRQSGGYVATI--GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPA--GRYFAGTMAEETAPAVLER  127 (297)
T ss_dssp             CSSCEEEEEEBTTSSEEEEE--TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTT--SCEEEEEEECCSBTTBCCT
T ss_pred             CCCceEEEEECCCCCEEEEE--CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCC--CCEEEecCCcccccccccC
Confidence            45789999999999966654  56899999988765432211  1 2345889999998  7877765332         


Q ss_pred             CcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecC--CCCCCCCCCCCCCccc
Q 004468          117 AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFR--QGSSCPPAGSSHQECR  194 (751)
Q Consensus       117 g~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr--~~~~~~~~~~~~~~~~  194 (751)
                      ....||.+... +        . +..+..+....+.++|+|++..++++.+.++.|.+||+.  ++..         ...
T Consensus       128 ~~~~l~~~d~~-g--------~-~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~---------~~~  188 (297)
T 3g4e_A          128 HQGALYSLFPD-H--------H-VKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQI---------SNR  188 (297)
T ss_dssp             TCEEEEEECTT-S--------C-EEEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCE---------EEE
T ss_pred             CCcEEEEEECC-C--------C-EEEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcc---------cCc
Confidence            33466666532 1        1 222333445678999999655566778888999999974  3321         001


Q ss_pred             eEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCcccccccccccc
Q 004468          195 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSE  274 (751)
Q Consensus       195 ~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (751)
                      .++..+.           ........+++.++ +++.++...++.|.+||..+++.+..+..                  
T Consensus       189 ~~~~~~~-----------~~~~~p~g~~~d~~-G~lwva~~~~~~v~~~d~~tG~~~~~i~~------------------  238 (297)
T 3g4e_A          189 RSVYKLE-----------KEEQIPDGMCIDAE-GKLWVACYNGGRVIRLDPVTGKRLQTVKL------------------  238 (297)
T ss_dssp             EEEEECC-----------GGGCEEEEEEEBTT-SCEEEEEETTTEEEEECTTTCCEEEEEEC------------------
T ss_pred             EEEEECC-----------CCCCCCCeeEECCC-CCEEEEEcCCCEEEEEcCCCceEEEEEEC------------------
Confidence            1222211           12245678999995 67888777888999999987654332210                  


Q ss_pred             CCccccceEEEEEc-CCCCEEEEEeC
Q 004468          275 HGRSSLHLTHVTFS-PNGEEVLLSYS  299 (751)
Q Consensus       275 ~g~~~~~vt~v~fs-pdg~~Ll~~s~  299 (751)
                        + ...+++++|. |+++.|++++.
T Consensus       239 --p-~~~~t~~~f~g~d~~~L~vt~~  261 (297)
T 3g4e_A          239 --P-VDKTTSCCFGGKNYSEMYVTCA  261 (297)
T ss_dssp             --S-SSBEEEEEEESGGGCEEEEEEB
T ss_pred             --C-CCCceEEEEeCCCCCEEEEEcC
Confidence              1 1148999998 89988877765

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.74  E-value=5.5e-07  Score=95.69  Aligned_cols=263  Identities=13%  Similarity=0.095  Sum_probs=147.8

Q ss_pred             ccccccEEeccCCCcEEEEEECCCCCEEEEEe--CCCcEEEEeCCCCeEEEEe------cccCCcceEEEEEecCCCCcE
Q 004468           38 RRLSQERELEGHQGCVNAISWNSKGSLLISGS--DDTHINVWSYSSRKLLHSI------ETGHSANVFCTKFVPETSDEL  109 (751)
Q Consensus        38 ~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs--~Dg~I~IWd~~~~~~~~~l------~~~h~~~V~~v~fsp~s~~~~  109 (751)
                      ..++.++.+.   ..+..|+++++|+++++..  .++.++||.+.+++.. .+      ..+|-..+..++|.|+  +++
T Consensus         7 g~~~~v~~~~---~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~~~~~~~~~~p~gv~~d~~--g~L   80 (343)
T 2qe8_A            7 DRLEVVAELS---LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI-PFPPQSGNAIITFDTVLGIKSDGN--GIV   80 (343)
T ss_dssp             -CCEEEEEES---SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE-ESCCCCSSCCCCCSCEEEEEECSS--SEE
T ss_pred             ceeEEEEEcC---CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee-cCCCcccCcccceeEeeEEEEcCC--CcE
Confidence            3455555544   7899999999999999874  2343666665555433 22      1235678999999998  677


Q ss_pred             EEEEEC-----CCcEEEEECCCCCCCCCCCCCCCCceeec------ccCCceeEEEEecCCCCEEEEEe---CCCcEEEE
Q 004468          110 VVSGAG-----DAEVRLFNLSRFSGRGLDDNAITPSALYQ------CHTRRVKKLAVEVGNPHVVWSAS---EDGTLRQH  175 (751)
Q Consensus       110 l~sgs~-----Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~------~h~~~V~~l~~sp~~~~~l~s~s---~Dg~I~iw  175 (751)
                      +++-..     +..|.+||+.++.          .+..+.      .+...+..++++++++.++++..   .++.|.+|
T Consensus        81 ~v~D~g~~~~~~~~i~~~d~~tg~----------~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~  150 (343)
T 2qe8_A           81 WMLDNGNQSKSVPKLVAWDTLNNQ----------LSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRV  150 (343)
T ss_dssp             EEEECHHHHTSCCEEEEEETTTTE----------EEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEE
T ss_pred             EEEcCCCCcCCCCeEEEEECCCCe----------EEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEE
Confidence            666544     5789999998642          122222      23345789999986667777776   78899999


Q ss_pred             ecCCCCCCCCCCCC---CCccceEEEecccCceecccCCCC----CccceEEEEEeCCCCcEEEEEeCCC-eEEEEeCCC
Q 004468          176 DFRQGSSCPPAGSS---HQECRNILLDLRCGAKRSLADPPK----QTLSLKSCDISSTRPHLLLVGGSDA-FARLYDRRM  247 (751)
Q Consensus       176 Dlr~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~~~~~----~~~~v~~i~~sp~~~~~l~sgs~D~-~IriwD~~~  247 (751)
                      |+.+++........   ..+...+..+   +.........+    ....+..|+|+|+ ++.|+++..++ .|..++...
T Consensus       151 d~~~g~~~r~~~~~~~~~~~~~~~~~~---g~~~~~~~~~g~~~~~~~~~~gia~s~d-g~~ly~~~~~~~~l~~~~~~~  226 (343)
T 2qe8_A          151 DLQTGLAARVLQGYPGIAPEDIDLVID---GVPVQIGQPDGTVIRPHLGVNGIVLDAE-NEWLYLSPMHSTSMYRIKSAD  226 (343)
T ss_dssp             ETTTCCEEEECTTCTTTSCCSCCCEET---TEECBEECTTSCEECCCCCEEEEEECTT-SCEEEEEESSCSEEEEEEHHH
T ss_pred             ECCCCCEEEEecCCCcccccccceeEC---CEEEEeccCCCceeceecccceeEeccC-CCEEEEEeCCCCeEEEEEHHH
Confidence            99876532111000   0000000000   00000000000    0124688999995 67777776665 555554321


Q ss_pred             CCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcceeeeec--CCCce
Q 004468          248 LPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTV--GDASK  325 (751)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~~~~~--~~~~~  325 (751)
                      .... .+       ...+.+.  .+...++.. ....++++++|+.+++...++.|.+||..++.. ......  ...+.
T Consensus       227 ~~~~-~~-------~~~~~~~--~~~~~g~~g-~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~-~~~~~~~~~~~p~  294 (343)
T 2qe8_A          227 LSNL-QL-------TDAELGS--KIERYSEKP-ICDGISIDKDHNIYVGDLAHSAIGVITSADRAY-KLLVTDEKLSWTD  294 (343)
T ss_dssp             HTCT-TC-------CHHHHHT--TCEEEEECC-SCSCEEECTTCCEEEEEGGGTEEEEEETTTTEE-EEEEECGGGSCEE
T ss_pred             hcCC-CC-------Chhhhhc--ceEecccCC-CCceEEECCCCCEEEEccCCCeEEEEECCCCCE-EEEEECCceecCC
Confidence            1100 00       0000000  000001111 255789999999988888899999999854432 222221  23456


Q ss_pred             eEEeCCC
Q 004468          326 IMSFTPT  332 (751)
Q Consensus       326 ~~~~sp~  332 (751)
                      .+++.++
T Consensus       295 ~va~~~~  301 (343)
T 2qe8_A          295 SFNFGSD  301 (343)
T ss_dssp             EEEECTT
T ss_pred             eeEECCC
Confidence            7777765

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=98.74  E-value=2.5e-06  Score=89.95  Aligned_cols=224  Identities=10%  Similarity=-0.010  Sum_probs=132.9

Q ss_pred             CcEEEEEECCC-CCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCC
Q 004468           51 GCVNAISWNSK-GSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSG  129 (751)
Q Consensus        51 ~~V~~l~~s~d-g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~  129 (751)
                      .-.....|+|+ +.++++...++.|.+||..+++... +  .....|.+++|.|+  ++++++. . ..|.+||..++..
T Consensus        49 ~~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~--~~~~~v~~i~~~~d--g~l~v~~-~-~gl~~~d~~~g~~  121 (326)
T 2ghs_A           49 LLGEGPTFDPASGTAWWFNILERELHELHLASGRKTV-H--ALPFMGSALAKISD--SKQLIAS-D-DGLFLRDTATGVL  121 (326)
T ss_dssp             SBEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE-E--ECSSCEEEEEEEET--TEEEEEE-T-TEEEEEETTTCCE
T ss_pred             CCCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE-E--ECCCcceEEEEeCC--CeEEEEE-C-CCEEEEECCCCcE
Confidence            34568899997 4566777778999999998776432 3  13467999999999  7777754 4 4499999875321


Q ss_pred             CCCCCCCCCCceeec--ccCCceeEEEEecCCCCEEEEEeCC------CcEEEEecCCCCCCCCCCCCCCccceEEEecc
Q 004468          130 RGLDDNAITPSALYQ--CHTRRVKKLAVEVGNPHVVWSASED------GTLRQHDFRQGSSCPPAGSSHQECRNILLDLR  201 (751)
Q Consensus       130 ~~~~~~~~~~~~~~~--~h~~~V~~l~~sp~~~~~l~s~s~D------g~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~  201 (751)
                              ..+....  .....+..++++| +++++++...+      +.|..+|  +++.            ..+..  
T Consensus       122 --------~~~~~~~~~~~~~~~~~i~~d~-~G~l~v~~~~~~~~~~~~~l~~~~--~g~~------------~~~~~--  176 (326)
T 2ghs_A          122 --------TLHAELESDLPGNRSNDGRMHP-SGALWIGTMGRKAETGAGSIYHVA--KGKV------------TKLFA--  176 (326)
T ss_dssp             --------EEEECSSTTCTTEEEEEEEECT-TSCEEEEEEETTCCTTCEEEEEEE--TTEE------------EEEEE--
T ss_pred             --------EEEeeCCCCCCCCCCCCEEECC-CCCEEEEeCCCcCCCCceEEEEEe--CCcE------------EEeeC--
Confidence                    1111111  1124688999999 55666554321      3444444  2220            01110  


Q ss_pred             cCceecccCCCCCccceEEEEEeCCCCcEE-EEEeCCCeEEEEeCC--CC-CCccccCCCCCCCCccccccccccccCCc
Q 004468          202 CGAKRSLADPPKQTLSLKSCDISSTRPHLL-LVGGSDAFARLYDRR--ML-PPLTSCQKRMSPPPCVNYFCPMHLSEHGR  277 (751)
Q Consensus       202 ~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l-~sgs~D~~IriwD~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  277 (751)
                                  .......++|+|+ ++.+ ++...++.|.+||+.  ++ ....           .+.+..  +.  ..
T Consensus       177 ------------~~~~~~~i~~s~d-g~~lyv~~~~~~~I~~~d~~~~~Gl~~~~-----------~~~~~~--~~--~~  228 (326)
T 2ghs_A          177 ------------DISIPNSICFSPD-GTTGYFVDTKVNRLMRVPLDARTGLPTGK-----------AEVFID--ST--GI  228 (326)
T ss_dssp             ------------EESSEEEEEECTT-SCEEEEEETTTCEEEEEEBCTTTCCBSSC-----------CEEEEE--CT--TS
T ss_pred             ------------CCcccCCeEEcCC-CCEEEEEECCCCEEEEEEcccccCCcccC-----------ceEEEE--CC--CC
Confidence                        1123568999996 5544 555567899999986  33 2100           000100  00  01


Q ss_pred             cccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcceeeeecCCCceeEEeC-CCCCCc
Q 004468          278 SSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFT-PTLNGL  336 (751)
Q Consensus       278 ~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~~~~~~~~~~~~~~s-p~~~~~  336 (751)
                       ...+..++++++|++.++...++.|++||.. ++...........+..++|. |+.+.+
T Consensus       229 -~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~-g~~~~~i~~~~~~~~~~af~g~d~~~L  286 (326)
T 2ghs_A          229 -KGGMDGSVCDAEGHIWNARWGEGAVDRYDTD-GNHIARYEVPGKQTTCPAFIGPDASRL  286 (326)
T ss_dssp             -SSEEEEEEECTTSCEEEEEETTTEEEEECTT-CCEEEEEECSCSBEEEEEEESTTSCEE
T ss_pred             -CCCCCeeEECCCCCEEEEEeCCCEEEEECCC-CCEEEEEECCCCCcEEEEEecCCCCEE
Confidence             1136789999999877777778899999984 33322222233346677776 655444

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.73  E-value=3.8e-09  Score=113.82  Aligned_cols=182  Identities=12%  Similarity=0.098  Sum_probs=103.0

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCc
Q 004468           61 KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPS  140 (751)
Q Consensus        61 dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~  140 (751)
                      ++.+|++++.|+.|..||..+|+.+..+. .  +.+.+..+.++  +.++++++.|+.|+.||..+++.          +
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~-~--~~~~s~p~~~~--g~~~v~~s~dg~l~a~d~~tG~~----------~   72 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLK-E--DPVLQVPTHVE--EPAFLPDPNDGSLYTLGSKNNEG----------L   72 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEE-C--CCSCCCC-------CCEEECTTTCCEEEC-----CC----------S
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEec-C--CCceecceEcC--CCEEEEeCCCCEEEEEECCCCce----------e
Confidence            57789999999999999999999998883 3  55666666666  67888888999999999986532          2


Q ss_pred             eeecccCC-cee-EEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccce
Q 004468          141 ALYQCHTR-RVK-KLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSL  218 (751)
Q Consensus       141 ~~~~~h~~-~V~-~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v  218 (751)
                      ..+..+.. .+. +..+.. + ..+++++.|+.|+.||.++++..              |....+           .   
T Consensus        73 w~~~~~~~~~~~~sp~~~~-~-~~v~~g~~dg~v~a~D~~tG~~~--------------w~~~~~-----------~---  122 (369)
T 2hz6_A           73 TKLPFTIPELVQASPCRSS-D-GILYMGKKQDIWYVIDLLTGEKQ--------------QTLSSA-----------F---  122 (369)
T ss_dssp             EECSCCHHHHHTTCSCC-------CCCCEEEEEEEEECCC----------------------------------------
T ss_pred             eeeeccCccccccCceEec-C-CEEEEEeCCCEEEEEECCCCcEE--------------EEecCC-----------C---
Confidence            22222211 110 001111 3 45668888999999999988643              211110           0   


Q ss_pred             EEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCC---CEEE
Q 004468          219 KSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNG---EEVL  295 (751)
Q Consensus       219 ~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg---~~Ll  295 (751)
                       ...++| ++..+++++.|+.|+.||.++++.+..+...                       .....+++++.   ..++
T Consensus       123 -~~~~~p-~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~-----------------------~~~~~~~~~~~~~~~~v~  177 (369)
T 2hz6_A          123 -ADSLSP-STSLLYLGRTEYTITMYDTKTRELRWNATYF-----------------------DYAASLPEDDVDYKMSHF  177 (369)
T ss_dssp             ------------EEEEEEEEEEECCCSSSSSCCCEEEEE-----------------------EECCBCCCCCTTCCCCEE
T ss_pred             -cccccc-cCCEEEEEecCCEEEEEECCCCCEEEeEecc-----------------------cccCccccCCccccceEE
Confidence             123456 4678888999999999999987654332100                       01112233332   5677


Q ss_pred             EEeCCCcEEEEECCCCC
Q 004468          296 LSYSGEHVYLMDVNHAG  312 (751)
Q Consensus       296 ~~s~d~~I~lwdl~~~~  312 (751)
                      +++.++.|+.||..+++
T Consensus       178 ~~~~dg~v~a~d~~tG~  194 (369)
T 2hz6_A          178 VSNGDGLVVTVDSESGD  194 (369)
T ss_dssp             EEETSCEEEEECTTTCC
T ss_pred             EECCCCEEEEEECCCCc
Confidence            88899999999999865

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=98.71  E-value=1.4e-07  Score=101.27  Aligned_cols=145  Identities=16%  Similarity=0.164  Sum_probs=103.4

Q ss_pred             cCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCC
Q 004468           48 GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRF  127 (751)
Q Consensus        48 gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~  127 (751)
                      .+.+ |+.|+|  ++++|+++ .++.|++||+.+......+ ..|...|.++.+.+.   + ++++..||.|.+||+...
T Consensus        86 ~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~~~~~~-~~~~~~v~~i~~~~p---~-~av~~~dG~L~v~dl~~~  156 (388)
T 1xip_A           86 EIPD-VIFVCF--HGDQVLVS-TRNALYSLDLEELSEFRTV-TSFEKPVFQLKNVNN---T-LVILNSVNDLSALDLRTK  156 (388)
T ss_dssp             ECTT-EEEEEE--ETTEEEEE-ESSEEEEEESSSTTCEEEE-EECSSCEEEEEECSS---E-EEEEETTSEEEEEETTTC
T ss_pred             eCCC-eeEEEE--CCCEEEEE-cCCcEEEEEchhhhccCcc-ceeecceeeEEecCC---C-EEEEECCCCEEEEEccCC
Confidence            4667 999999  99999999 8899999998766554445 567888999988866   2 888899999999999853


Q ss_pred             CCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceec
Q 004468          128 SGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRS  207 (751)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  207 (751)
                      .          ..    .+...|++++|+| .+  ++.|..||+|++|+........         ...+   ...  ..
T Consensus       157 ~----------~~----~~~~~Vs~v~WSp-kG--~~vg~~dg~i~~~~~~~~~~~~---------k~~I---~~P--p~  205 (388)
T 1xip_A          157 S----------TK----QLAQNVTSFDVTN-SQ--LAVLLKDRSFQSFAWRNGEMEK---------QFEF---SLP--SE  205 (388)
T ss_dssp             C----------EE----EEEESEEEEEECS-SE--EEEEETTSCEEEEEEETTEEEE---------EEEE---CCC--HH
T ss_pred             c----------cc----cccCCceEEEEcC-Cc--eEEEEcCCcEEEEcCCCccccc---------ccee---cCC--cc
Confidence            1          11    2567899999999 44  6789999999999887654100         0000   000  00


Q ss_pred             ccCCCCCccceEEEEEeCCCCcEEEE
Q 004468          208 LADPPKQTLSLKSCDISSTRPHLLLV  233 (751)
Q Consensus       208 ~~~~~~~~~~v~~i~~sp~~~~~l~s  233 (751)
                      +.....+...|.++.|.++ ..++++
T Consensus       206 ~~~~~~~~~~V~sI~wl~~-~~flv~  230 (388)
T 1xip_A          206 LEELPVEEYSPLSVTILSP-QDFLAV  230 (388)
T ss_dssp             HHTSCTTTSEEEEEEESSS-SEEEEE
T ss_pred             cccccCCCeeEEEEEEecC-CeEEEE
Confidence            1111124578999999984 566665

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.71  E-value=2.8e-07  Score=98.46  Aligned_cols=249  Identities=10%  Similarity=-0.006  Sum_probs=145.1

Q ss_pred             hccccccEEeccCCCcEEEEEECCCCCEEEEEe----------CCCcEEEEeCCCCeEEEEecccC------CcceEEEE
Q 004468           37 VRRLSQERELEGHQGCVNAISWNSKGSLLISGS----------DDTHINVWSYSSRKLLHSIETGH------SANVFCTK  100 (751)
Q Consensus        37 i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs----------~Dg~I~IWd~~~~~~~~~l~~~h------~~~V~~v~  100 (751)
                      ..+.+.+.++..-..+  .+.++|||++|..+.          .+++|.+||+.+++.+.++..+.      ......++
T Consensus        53 ~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia  130 (368)
T 1mda_H           53 AGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIG  130 (368)
T ss_dssp             TTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEE
T ss_pred             CCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEE
Confidence            4567778888655555  799999999888886          37889999999999999884320      13466899


Q ss_pred             EecCCCCcEEEEEEC--CCcEEE--EECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEe
Q 004468          101 FVPETSDELVVSGAG--DAEVRL--FNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHD  176 (751)
Q Consensus       101 fsp~s~~~~l~sgs~--Dg~V~v--wd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwD  176 (751)
                      |+|+  |++++.+..  +..|.+  +|+.+             +..+.- .+.   +.+.|++...+++.+.||++.+.|
T Consensus       131 ~SpD--Gk~lyVan~~~~~~v~V~~iD~~t-------------v~~i~v-~~~---~~~~p~g~~~~~~~~~dg~~~~vd  191 (368)
T 1mda_H          131 NCAS--SACLLFFLFGSSAAAGLSVPGASD-------------DQLTKS-ASC---FHIHPGAAATHYLGSCPASLAASD  191 (368)
T ss_dssp             ECTT--SSCEEEEECSSSCEEEEEETTTEE-------------EEEEEC-SSC---CCCEEEETTEEECCCCTTSCEEEE
T ss_pred             EcCC--CCEEEEEccCCCCeEEEEEEchhh-------------ceEEEC-CCc---eEEccCCCeEEEEEcCCCCEEEEE
Confidence            9999  788887764  467888  88863             112210 010   123354556677777888888888


Q ss_pred             cCC-----CCCCCC----CCCC-----CCc---------cceEEEecccCceecccCCCC----------CccceEEEEE
Q 004468          177 FRQ-----GSSCPP----AGSS-----HQE---------CRNILLDLRCGAKRSLADPPK----------QTLSLKSCDI  223 (751)
Q Consensus       177 lr~-----~~~~~~----~~~~-----~~~---------~~~~l~~~~~~~~~~~~~~~~----------~~~~v~~i~~  223 (751)
                      +.+     ++....    ...+     ...         .....++...+....+....-          .......++|
T Consensus       192 ~~~~~~~~~~v~~~~t~~i~vg~~P~~~~~~~~~~~vs~~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~  271 (368)
T 1mda_H          192 LAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAK  271 (368)
T ss_dssp             CCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEE
T ss_pred             CccccccCCeEEEEeeeeeeCCCCccccccCCEEEEEcCCEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEE
Confidence            876     322100    0000     000         011122222111000000000          0011122689


Q ss_pred             eCCCCcEEEEE-e---C-----CCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCE-
Q 004468          224 SSTRPHLLLVG-G---S-----DAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEE-  293 (751)
Q Consensus       224 sp~~~~~l~sg-s---~-----D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~-  293 (751)
                      +|++ +.++++ .   .     +..+.++|+.+.+.+..+..                      ......++|+|||++ 
T Consensus       272 s~dg-~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~v----------------------g~~p~gi~~s~Dg~~l  328 (368)
T 1mda_H          272 LKNT-DGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISN----------------------GHDSDAIIAAQDGASD  328 (368)
T ss_dssp             ETTT-TEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEE----------------------EEEECEEEECCSSSCE
T ss_pred             cCCC-CEEEEEeccccCcccccCCCEEEEECCCCeEEEEEEC----------------------CCCcceEEECCCCCEE
Confidence            9964 555543 3   2     23566999998775543311                      113778999999985 


Q ss_pred             EEEEe-CCCcEEEEECCCCCcceeeeecCCCceeEEeC
Q 004468          294 VLLSY-SGEHVYLMDVNHAGGRAMRYTVGDASKIMSFT  330 (751)
Q Consensus       294 Ll~~s-~d~~I~lwdl~~~~~~~~~~~~~~~~~~~~~s  330 (751)
                      ++++. .++.|.++|+.+.+. ......+..+..+++.
T Consensus       329 ~va~~~~~~~VsVID~~t~kv-v~~I~vg~~P~~i~~~  365 (368)
T 1mda_H          329 NYANSAGTEVLDIYDAASDQD-QSSVELDKGPESLSVQ  365 (368)
T ss_dssp             EEEEETTTTEEEEEESSSCEE-EEECCCCSCCCEEECC
T ss_pred             EEEccCCCCeEEEEECCCCcE-EEEEECCCCCCEEEee
Confidence            55555 589999999999542 2333334444444443

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.71  E-value=7e-07  Score=93.08  Aligned_cols=229  Identities=11%  Similarity=0.039  Sum_probs=140.4

Q ss_pred             cccEEeccCCCcEEEEEECCCCC-EEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcE
Q 004468           41 SQERELEGHQGCVNAISWNSKGS-LLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEV  119 (751)
Q Consensus        41 ~~~~~L~gH~~~V~~l~~s~dg~-~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V  119 (751)
                      ..+..|..+........|+++|+ +++++..++.|..|+. ++.. ..+ ..+...+..+++.|+  |+++++...++.|
T Consensus        35 ~~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~-~~~-~~~~~~~~gl~~d~d--G~l~v~~~~~~~v  109 (305)
T 3dr2_A           35 ARLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTV-DVL-LDATAFTNGNAVDAQ--QRLVHCEHGRRAI  109 (305)
T ss_dssp             CCCEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCE-EEE-EESCSCEEEEEECTT--SCEEEEETTTTEE
T ss_pred             CceEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCE-EEE-eCCCCccceeeECCC--CCEEEEECCCCEE
Confidence            34555666667788999999998 7778888899999998 4443 334 345677999999998  7877766667889


Q ss_pred             EEEECCCCCCCCCCCCCCCCceeec----c-cCCceeEEEEecCCCCEEEE----EeC-------------CCcEEEEec
Q 004468          120 RLFNLSRFSGRGLDDNAITPSALYQ----C-HTRRVKKLAVEVGNPHVVWS----ASE-------------DGTLRQHDF  177 (751)
Q Consensus       120 ~vwd~~~~~~~~~~~~~~~~~~~~~----~-h~~~V~~l~~sp~~~~~l~s----~s~-------------Dg~I~iwDl  177 (751)
                      .+|+.. +.           ...+.    + ....+..+++.| ++.+++|    |..             .+.|..||.
T Consensus       110 ~~~~~~-g~-----------~~~~~~~~~~~~~~~~~~i~~d~-dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~  176 (305)
T 3dr2_A          110 TRSDAD-GQ-----------AHLLVGRYAGKRLNSPNDLIVAR-DGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPP  176 (305)
T ss_dssp             EEECTT-SC-----------EEEEECEETTEECSCCCCEEECT-TSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECS
T ss_pred             EEECCC-CC-----------EEEEEeccCCCccCCCCCEEECC-CCCEEEeCcCCCccccccccccccccCCCeEEEEcC
Confidence            999875 21           12221    1 123467899998 5677765    322             234555665


Q ss_pred             CCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCC------CeEEEEeCCCCCCc
Q 004468          178 RQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD------AFARLYDRRMLPPL  251 (751)
Q Consensus       178 r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D------~~IriwD~~~~~~~  251 (751)
                      .+++..                       .+.    .......++|+|+ ++.|+++...      +.|++||+.... +
T Consensus       177 ~~g~~~-----------------------~~~----~~~~p~gl~~spd-g~~lyv~~~~~~~~~~~~i~~~~~~~~~-l  227 (305)
T 3dr2_A          177 DGSPLQ-----------------------RMA----DLDHPNGLAFSPD-EQTLYVSQTPEQGHGSVEITAFAWRDGA-L  227 (305)
T ss_dssp             SSCCCE-----------------------EEE----EESSEEEEEECTT-SSEEEEEECCC---CCCEEEEEEEETTE-E
T ss_pred             CCCcEE-----------------------EEe----cCCCCcceEEcCC-CCEEEEEecCCcCCCCCEEEEEEecCCC-c
Confidence            444310                       010    1124567999995 6766666655      789999986432 1


Q ss_pred             cccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcceeeeecCCCceeEEeCC
Q 004468          252 TSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTP  331 (751)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp  331 (751)
                      ..          ...+...   .    ......++++++|+ |.++..+ .|++|+... + ....+.....+..++|.|
T Consensus       228 ~~----------~~~~~~~---~----~~~pdgi~~d~~G~-lwv~~~~-gv~~~~~~g-~-~~~~~~~~~~~~~~~f~~  286 (305)
T 3dr2_A          228 HD----------RRHFASV---P----DGLPDGFCVDRGGW-LWSSSGT-GVCVFDSDG-Q-LLGHIPTPGTASNCTFDQ  286 (305)
T ss_dssp             EE----------EEEEECC---S----SSCCCSEEECTTSC-EEECCSS-EEEEECTTS-C-EEEEEECSSCCCEEEECT
T ss_pred             cC----------CeEEEEC---C----CCCCCeEEECCCCC-EEEecCC-cEEEECCCC-C-EEEEEECCCceeEEEEeC
Confidence            10          0011000   0    11245689999999 4445444 599999854 3 222333333566778886


Q ss_pred             CCCCcc
Q 004468          332 TLNGLE  337 (751)
Q Consensus       332 ~~~~~~  337 (751)
                      +.+.+.
T Consensus       287 d~~~L~  292 (305)
T 3dr2_A          287 AQQRLF  292 (305)
T ss_dssp             TSCEEE
T ss_pred             CCCEEE
Confidence            655443

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=98.59  E-value=5.9e-06  Score=87.00  Aligned_cols=193  Identities=11%  Similarity=0.093  Sum_probs=118.3

Q ss_pred             CCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecc--cC-CcceEEEEEecCCCCcEEEEEECC----CcEEEE
Q 004468           50 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIET--GH-SANVFCTKFVPETSDELVVSGAGD----AEVRLF  122 (751)
Q Consensus        50 ~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~--~h-~~~V~~v~fsp~s~~~~l~sgs~D----g~V~vw  122 (751)
                      ...|.++.|+++|+++++. .+ .|.+||..+++.......  +. ...+.++++.|+  |+++++...+    ....||
T Consensus        89 ~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~--G~l~v~~~~~~~~~~~~~l~  164 (326)
T 2ghs_A           89 PFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPS--GALWIGTMGRKAETGAGSIY  164 (326)
T ss_dssp             SSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTT--SCEEEEEEETTCCTTCEEEE
T ss_pred             CCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCC--CCEEEEeCCCcCCCCceEEE
Confidence            4679999999999988765 44 499999987765432211  11 246899999998  7777765432    233444


Q ss_pred             ECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecC--CC-CCCCCCCCCCCccceEEEe
Q 004468          123 NLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFR--QG-SSCPPAGSSHQECRNILLD  199 (751)
Q Consensus       123 d~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr--~~-~~~~~~~~~~~~~~~~l~~  199 (751)
                      .+..+          + +..+..+......++|+|++..++++.+.++.|.+||+.  ++ ...         ....+..
T Consensus       165 ~~~~g----------~-~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~---------~~~~~~~  224 (326)
T 2ghs_A          165 HVAKG----------K-VTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTG---------KAEVFID  224 (326)
T ss_dssp             EEETT----------E-EEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSS---------CCEEEEE
T ss_pred             EEeCC----------c-EEEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCccc---------CceEEEE
Confidence            44321          1 222323344577899999544455666678899999986  33 210         0112221


Q ss_pred             cccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccc
Q 004468          200 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS  279 (751)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  279 (751)
                      ..           ........+.+.++ +++.++...++.|.+||. .++.+..+.                    .+ .
T Consensus       225 ~~-----------~~~~~p~gi~~d~~-G~lwva~~~~~~v~~~d~-~g~~~~~i~--------------------~~-~  270 (326)
T 2ghs_A          225 ST-----------GIKGGMDGSVCDAE-GHIWNARWGEGAVDRYDT-DGNHIARYE--------------------VP-G  270 (326)
T ss_dssp             CT-----------TSSSEEEEEEECTT-SCEEEEEETTTEEEEECT-TCCEEEEEE--------------------CS-C
T ss_pred             CC-----------CCCCCCCeeEECCC-CCEEEEEeCCCEEEEECC-CCCEEEEEE--------------------CC-C
Confidence            11           11234567889985 677777667789999997 333221110                    01 1


Q ss_pred             cceEEEEEc-CCCCEEEEEeCC
Q 004468          280 LHLTHVTFS-PNGEEVLLSYSG  300 (751)
Q Consensus       280 ~~vt~v~fs-pdg~~Ll~~s~d  300 (751)
                      ..+++++|+ |+++.|++++..
T Consensus       271 ~~~~~~af~g~d~~~L~vt~~~  292 (326)
T 2ghs_A          271 KQTTCPAFIGPDASRLLVTSAR  292 (326)
T ss_dssp             SBEEEEEEESTTSCEEEEEEBC
T ss_pred             CCcEEEEEecCCCCEEEEEecC
Confidence            148999998 898888766653

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=98.58  E-value=5.5e-06  Score=90.29  Aligned_cols=219  Identities=8%  Similarity=-0.055  Sum_probs=133.1

Q ss_pred             EEECCCCCEEEEEeCCC--cEEEEeCCCCeEEEEe---cccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCC
Q 004468           56 ISWNSKGSLLISGSDDT--HINVWSYSSRKLLHSI---ETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGR  130 (751)
Q Consensus        56 l~~s~dg~~LaSgs~Dg--~I~IWd~~~~~~~~~l---~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~  130 (751)
                      ++|+++++.|+++..++  .|.+|+...+.....+   .......+.+++++|+. +. |+.+..++.|+.||.....  
T Consensus       176 ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~-g~-lyv~d~~~~I~~~d~~~~~--  251 (409)
T 3hrp_A          176 PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETE-EW-LYFVDSNKNFGRFNVKTQE--  251 (409)
T ss_dssp             CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTS-SE-EEEECTTCEEEEEETTTCC--
T ss_pred             eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCC-Ce-EEEEECCCcEEEEECCCCC--
Confidence            99999999999998876  7888887655432222   11245678899999962 44 4447778899999998532  


Q ss_pred             CCCCCCCCCceee-----cccCCce-e-EEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecc--
Q 004468          131 GLDDNAITPSALY-----QCHTRRV-K-KLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLR--  201 (751)
Q Consensus       131 ~~~~~~~~~~~~~-----~~h~~~V-~-~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~--  201 (751)
                               ...+     .++...- . .++|+|+++.++++-...+.|+.||.....             ..+....  
T Consensus       252 ---------~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~~-------------~~~~g~~~~  309 (409)
T 3hrp_A          252 ---------VTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGEC-------------EWFCGSATQ  309 (409)
T ss_dssp             ---------EEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCCE-------------EEEEECTTC
T ss_pred             ---------EEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCCE-------------EEEEeCCCC
Confidence                     1111     1222222 3 899999777888888889999999876431             1111110  


Q ss_pred             cCceecccCCCCCccceEEEEEeCCCCcEEEEEe-CCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCcccc
Q 004468          202 CGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGG-SDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSL  280 (751)
Q Consensus       202 ~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs-~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  280 (751)
                      .+.... ............++++|+ ++++++-. .++.|+.||+..+... .+......    .-+... ..... .-.
T Consensus       310 ~g~~dg-~~~~~~~~~P~gia~d~d-G~lyvad~~~~~~I~~~~~~~G~v~-~~~g~~~~----~g~~~g-~~~~~-~~~  380 (409)
T 3hrp_A          310 KTVQDG-LREEALFAQPNGMTVDED-GNFYIVDGFKGYCLRKLDILDGYVS-TVAGQVDV----ASQIDG-TPLEA-TFN  380 (409)
T ss_dssp             CSCBCE-EGGGCBCSSEEEEEECTT-CCEEEEETTTTCEEEEEETTTTEEE-EEEECTTC----BSCCCB-STTTC-CBS
T ss_pred             CCcCCC-cccccEeCCCeEEEEeCC-CCEEEEeCCCCCEEEEEECCCCEEE-EEeCCCCC----CCcCCC-Chhce-EeC
Confidence            000000 000001234788999995 67777777 8899999997655321 11100000    000000 00000 011


Q ss_pred             ceEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 004468          281 HLTHVTFSPNGEEVLLSYSGEHVYLMDVN  309 (751)
Q Consensus       281 ~vt~v~fspdg~~Ll~~s~d~~I~lwdl~  309 (751)
                      ....++++++|..+++-..++.|+.++++
T Consensus       381 ~P~giavd~~g~lyVad~~n~~Ir~i~~e  409 (409)
T 3hrp_A          381 YPYDICYDGEGGYWIAEAWGKAIRKYAVE  409 (409)
T ss_dssp             SEEEEEECSSSEEEEEESTTCEEEEEEEC
T ss_pred             CceEEEEcCCCCEEEEECCCCeEEEEEeC
Confidence            47899999998888888889999988753

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=98.57  E-value=1e-06  Score=103.99  Aligned_cols=200  Identities=13%  Similarity=0.128  Sum_probs=124.8

Q ss_pred             EEEEECCCCCEEEEEeCCCc--------------EEEEeCCCCe----EEEEecccCCcceEEEEEecCCCCcEEEEEEC
Q 004468           54 NAISWNSKGSLLISGSDDTH--------------INVWSYSSRK----LLHSIETGHSANVFCTKFVPETSDELVVSGAG  115 (751)
Q Consensus        54 ~~l~~s~dg~~LaSgs~Dg~--------------I~IWd~~~~~----~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~  115 (751)
                      ..++|+|| +.|+.++.|+.              |.+|++.++.    .+... ..|...+..+.|+|+  |++|+..+.
T Consensus       212 ~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~-~~~~~~~~~~~~SpD--G~~l~~~~~  287 (741)
T 1yr2_A          212 SGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFAT-PELPKRGHGASVSSD--GRWVVITSS  287 (741)
T ss_dssp             CCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECC-TTCTTCEEEEEECTT--SCEEEEEEE
T ss_pred             ccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEecc-CCCCeEEEEEEECCC--CCEEEEEEE
Confidence            57899999 99998887665              8899987665    22222 334456899999999  888887765


Q ss_pred             CC-----cEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeC----CCcEEEEecCCCCCCCCC
Q 004468          116 DA-----EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASE----DGTLRQHDFRQGSSCPPA  186 (751)
Q Consensus       116 Dg-----~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~----Dg~I~iwDlr~~~~~~~~  186 (751)
                      ++     .|++||+..+..        ++...+..+...+.... +|++ ..|+..+.    ++.|.+||+.++. .   
T Consensus       288 ~~~~~~~~l~~~d~~~~~~--------~~~~~l~~~~~~~~~~~-~~dg-~~l~~~s~~~~~~~~l~~~d~~~~~-~---  353 (741)
T 1yr2_A          288 EGTDPVNTVHVARVTNGKI--------GPVTALIPDLKAQWDFV-DGVG-DQLWFVSGDGAPLKKIVRVDLSGST-P---  353 (741)
T ss_dssp             CTTCSCCEEEEEEEETTEE--------CCCEEEECSSSSCEEEE-EEET-TEEEEEECTTCTTCEEEEEECSSSS-C---
T ss_pred             ccCCCcceEEEEECCCCCC--------cccEEecCCCCceEEEE-eccC-CEEEEEECCCCCCCEEEEEeCCCCc-c---
Confidence            44     899999975311        10344445555555553 4744 55555554    3458899987631 0   


Q ss_pred             CCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCC-CCCccccCCCCCCCCccc
Q 004468          187 GSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM-LPPLTSCQKRMSPPPCVN  265 (751)
Q Consensus       187 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~-~~~~~~~~~~~~~~~~~~  265 (751)
                           .. ..++             +.+...+..++++  ++.++++...|+..+||.+.. +...             +
T Consensus       354 -----~~-~~l~-------------~~~~~~l~~~~~~--~~~lv~~~~~dg~~~l~~~~~~g~~~-------------~  399 (741)
T 1yr2_A          354 -----RF-DTVV-------------PESKDNLESVGIA--GNRLFASYIHDAKSQVLAFDLDGKPA-------------G  399 (741)
T ss_dssp             -----EE-EEEE-------------CCCSSEEEEEEEE--BTEEEEEEEETTEEEEEEEETTSCEE-------------E
T ss_pred             -----cc-EEEe-------------cCCCCeEEEEEEE--CCEEEEEEEECCEEEEEEEeCCCCce-------------e
Confidence                 00 1111             1122345667777  457888999999888886542 2111             1


Q ss_pred             cccccccccCCccccceEEEEEcCCCCEEEEEeC----CCcEEEEECCCCC
Q 004468          266 YFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS----GEHVYLMDVNHAG  312 (751)
Q Consensus       266 ~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~----d~~I~lwdl~~~~  312 (751)
                      .+   .+    +....+..+.++|+++.|+....    .+.|++||+.++.
T Consensus       400 ~l---~~----~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  443 (741)
T 1yr2_A          400 AV---SL----PGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK  443 (741)
T ss_dssp             EC---BC----SSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred             ec---cC----CCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence            11   00    11124888999999987664433    4799999998754

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=98.56  E-value=2.7e-05  Score=83.54  Aligned_cols=247  Identities=11%  Similarity=-0.036  Sum_probs=138.9

Q ss_pred             EECCCCCEEEEEeC--CC---cEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEE----------CCCcEEE
Q 004468           57 SWNSKGSLLISGSD--DT---HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGA----------GDAEVRL  121 (751)
Q Consensus        57 ~~s~dg~~LaSgs~--Dg---~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs----------~Dg~V~v  121 (751)
                      ...|+++++.+...  ..   +|.+||..+++.+..+..+. .+  .++|+|+  +++++.+.          .++.|.+
T Consensus        27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~-~p--~i~~spD--g~~lyv~n~~~~~~~rg~~~~~v~v  101 (373)
T 2mad_H           27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGF-LP--NPVAAHS--GSEFALASTSFSRIAKGKRTDYVEV  101 (373)
T ss_pred             cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCC-CC--CeEECCC--CCEEEEEeccccccccCCCCCeEEE
Confidence            34467776666543  22   88999999999988884442 33  9999999  78887765          3688999


Q ss_pred             EECCCCCCCCCCCCCCCCceeeccc-------CCceeEEEEecCCCCEEEEEeC--CCcEEEEecCCCCCCCC-CCCCC-
Q 004468          122 FNLSRFSGRGLDDNAITPSALYQCH-------TRRVKKLAVEVGNPHVVWSASE--DGTLRQHDFRQGSSCPP-AGSSH-  190 (751)
Q Consensus       122 wd~~~~~~~~~~~~~~~~~~~~~~h-------~~~V~~l~~sp~~~~~l~s~s~--Dg~I~iwDlr~~~~~~~-~~~~~-  190 (751)
                      ||..+.          +.+..+...       ......++|+| ++++|+.+..  +++|.++| .+++.... ..... 
T Consensus       102 iD~~t~----------~~~~~i~~~~~~~~~~g~~p~~~~~sp-DG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~  169 (373)
T 2mad_H          102 FDPVTF----------LPIADIELPDAPRFDVGPYSWMNANTP-NNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTC  169 (373)
T ss_pred             EECCCC----------cEEEEEECCCccccccCCCccceEECC-CCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCce
Confidence            999853          223322211       12345899999 4566655553  57899999 88765433 21110 


Q ss_pred             ---------------CccceEEEecccCceecccC----CCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCc
Q 004468          191 ---------------QECRNILLDLRCGAKRSLAD----PPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPL  251 (751)
Q Consensus       191 ---------------~~~~~~l~~~~~~~~~~~~~----~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~  251 (751)
                                     .+.....++. .+.......    ............+.++++.++++. .++.|.+.|+......
T Consensus       170 ~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-~~~~v~vid~~~~~~~  247 (373)
T 2mad_H          170 YHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPV-YSGKILQADISAAGAT  247 (373)
T ss_pred             EEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEc-CCceEEEEeccCCcce
Confidence                           0111122222 222110000    000000112234556544444444 6788999998643211


Q ss_pred             --cccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeC----------CCcEEEEECCCCCcceeeee
Q 004468          252 --TSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS----------GEHVYLMDVNHAGGRAMRYT  319 (751)
Q Consensus       252 --~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~----------d~~I~lwdl~~~~~~~~~~~  319 (751)
                        ..+...           .......+........++++|++++|++...          ++.|.++|+.+.+... ...
T Consensus       248 v~~~~~~~-----------~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~-~i~  315 (373)
T 2mad_H          248 NKAPIDAL-----------SGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSS-QIS  315 (373)
T ss_pred             Eeeeeeec-----------CCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEE-EEE
Confidence              000000           0000000011112445789999999888654          3589999999854333 335


Q ss_pred             cCCCceeEEeCCCCC
Q 004468          320 VGDASKIMSFTPTLN  334 (751)
Q Consensus       320 ~~~~~~~~~~sp~~~  334 (751)
                      .+..+..+.|+|+.+
T Consensus       316 ~g~~p~~i~~s~Dg~  330 (373)
T 2mad_H          316 LGHDVDAISVAQDGG  330 (373)
T ss_pred             CCCCcCeEEECCCCC
Confidence            566788899999877

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.48  E-value=1.4e-05  Score=80.76  Aligned_cols=225  Identities=7%  Similarity=-0.032  Sum_probs=137.6

Q ss_pred             cccccEEeccCCC--cEEEEEECCCCCEEEEEeC--CCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEE
Q 004468           39 RLSQERELEGHQG--CVNAISWNSKGSLLISGSD--DTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGA  114 (751)
Q Consensus        39 ~~~~~~~L~gH~~--~V~~l~~s~dg~~LaSgs~--Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs  114 (751)
                      +.+.++++. |..  ....|.|+++|.+.++.+.  ++.|.+.|+.+++.+..+..+.......+++..   +.+.++.-
T Consensus         8 ~~~vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g---~~lyv~t~   83 (266)
T 2iwa_A            8 IVEVLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLN---EKLYQVVW   83 (266)
T ss_dssp             EEEEEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEET---TEEEEEET
T ss_pred             CceEEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeC---CEEEEEEe
Confidence            455667774 553  3689999999876666654  679999999999999887433222223444442   35666667


Q ss_pred             CCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccc
Q 004468          115 GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECR  194 (751)
Q Consensus       115 ~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~  194 (751)
                      .++.|.++|..+.          +.+..+.--...  ...+++++..++++- .+++|.++|..+.+...          
T Consensus        84 ~~~~v~viD~~t~----------~v~~~i~~g~~~--g~glt~Dg~~l~vs~-gs~~l~viD~~t~~v~~----------  140 (266)
T 2iwa_A           84 LKNIGFIYDRRTL----------SNIKNFTHQMKD--GWGLATDGKILYGSD-GTSILYEIDPHTFKLIK----------  140 (266)
T ss_dssp             TCSEEEEEETTTT----------EEEEEEECCSSS--CCEEEECSSSEEEEC-SSSEEEEECTTTCCEEE----------
T ss_pred             cCCEEEEEECCCC----------cEEEEEECCCCC--eEEEEECCCEEEEEC-CCCeEEEEECCCCcEEE----------
Confidence            7899999999864          335555321111  234556566666654 68899999998765220          


Q ss_pred             eEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCcccccccccccc
Q 004468          195 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSE  274 (751)
Q Consensus       195 ~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (751)
                      .+...          ..+.....++.+.|.  ++.+++....++.|.+.|..+++.+..+...        ...+.....
T Consensus       141 ~I~Vg----------~~~~p~~~~nele~~--dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~--------g~~~~~~~~  200 (266)
T 2iwa_A          141 KHNVK----------YNGHRVIRLNELEYI--NGEVWANIWQTDCIARISAKDGTLLGWILLP--------NLRKKLIDE  200 (266)
T ss_dssp             EEECE----------ETTEECCCEEEEEEE--TTEEEEEETTSSEEEEEETTTCCEEEEEECH--------HHHHHHHHT
T ss_pred             EEEEC----------CCCcccccceeEEEE--CCEEEEecCCCCeEEEEECCCCcEEEEEECC--------Ccccccccc
Confidence            11100          000011235677777  3566666667889999999998765543211        000000000


Q ss_pred             CCccccceEEEEEcCCCCEEEEEe-CCCcEEEEECCC
Q 004468          275 HGRSSLHLTHVTFSPNGEEVLLSY-SGEHVYLMDVNH  310 (751)
Q Consensus       275 ~g~~~~~vt~v~fspdg~~Ll~~s-~d~~I~lwdl~~  310 (751)
                      ........+.|+|+|+++.|++++ ..+.|++.++..
T Consensus       201 ~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~  237 (266)
T 2iwa_A          201 GFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHL  237 (266)
T ss_dssp             TCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEE
T ss_pred             cccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEec
Confidence            001112478999999998776655 578999998876

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=98.43  E-value=4.5e-06  Score=89.19  Aligned_cols=251  Identities=8%  Similarity=0.021  Sum_probs=146.1

Q ss_pred             EEECCCCCEEEEEeC-----CCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEE----------CCCcEE
Q 004468           56 ISWNSKGSLLISGSD-----DTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGA----------GDAEVR  120 (751)
Q Consensus        56 l~~s~dg~~LaSgs~-----Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs----------~Dg~V~  120 (751)
                      ....|+++.+.....     ++.|.+.|..+++.+..+..+.. + . ++++|+  +++++.+.          .++.|.
T Consensus        38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~-P-~-va~spD--G~~lyVan~~~~r~~~G~~~~~Vs  112 (386)
T 3sjl_D           38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFL-P-N-PVVADD--GSFIAHASTVFSRIARGERTDYVE  112 (386)
T ss_dssp             CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSS-C-E-EEECTT--SSCEEEEEEEEEETTEEEEEEEEE
T ss_pred             eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCC-C-c-EEECCC--CCEEEEEcccccccccCCCCCEEE
Confidence            345789988777765     67999999999999999955444 3 4 999999  77776654          467899


Q ss_pred             EEECCCCCCCCCCCCCCCCceeeccc-------CCceeEEEEecCCCCEEEEEe--CCCcEEEEecCCCCCCCCCCCC--
Q 004468          121 LFNLSRFSGRGLDDNAITPSALYQCH-------TRRVKKLAVEVGNPHVVWSAS--EDGTLRQHDFRQGSSCPPAGSS--  189 (751)
Q Consensus       121 vwd~~~~~~~~~~~~~~~~~~~~~~h-------~~~V~~l~~sp~~~~~l~s~s--~Dg~I~iwDlr~~~~~~~~~~~--  189 (751)
                      +||..+.          +.+..+.-.       ......++|+|+ ++.++.+.  .+++|.++|+.+.+........  
T Consensus       113 viD~~t~----------~v~~~I~v~~g~r~~~g~~P~~~a~spD-Gk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~  181 (386)
T 3sjl_D          113 VFDPVTL----------LPTADIELPDAPRFLVGTYPWMTSLTPD-GKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC  181 (386)
T ss_dssp             EECTTTC----------CEEEEEEETTCCCCCBSCCGGGEEECTT-SSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE
T ss_pred             EEECCCC----------eEEEEEECCCccccccCCCCceEEEcCC-CCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCc
Confidence            9999874          334444211       124567999995 55555554  3689999999998754221110  


Q ss_pred             --------------CCccceEEEeccc-Cceeccc--CCCCCccce-EEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCC-
Q 004468          190 --------------HQECRNILLDLRC-GAKRSLA--DPPKQTLSL-KSCDISSTRPHLLLVGGSDAFARLYDRRMLPP-  250 (751)
Q Consensus       190 --------------~~~~~~~l~~~~~-~~~~~~~--~~~~~~~~v-~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~-  250 (751)
                                    ..+....++++.. +......  ........+ ....|.+.++++++ .+.++.|.+.|...... 
T Consensus       182 ~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~  260 (386)
T 3sjl_D          182 YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAK  260 (386)
T ss_dssp             EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCE
T ss_pred             ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcce
Confidence                          0111223333333 2221100  000001111 12355433555544 55589999999875431 


Q ss_pred             -ccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeC----------CCcEEEEECCCCCcceeeee
Q 004468          251 -LTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS----------GEHVYLMDVNHAGGRAMRYT  319 (751)
Q Consensus       251 -~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~----------d~~I~lwdl~~~~~~~~~~~  319 (751)
                       +..+          ..+...... .+-.......++++|+++.|++...          .+.|.++|+.+.+. ...+.
T Consensus       261 v~~~~----------~~~~~~~~~-~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv-~~~i~  328 (386)
T 3sjl_D          261 FLPAV----------EALTEAERA-DGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGER-LAKFE  328 (386)
T ss_dssp             ECCCE----------ESSCHHHHH-TTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCE-EEEEE
T ss_pred             eecce----------ecccccccc-ccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeE-EEEEE
Confidence             1110          000000000 0000011334778999999988764          35799999999653 33444


Q ss_pred             cCCCceeEEeCCCCCC
Q 004468          320 VGDASKIMSFTPTLNG  335 (751)
Q Consensus       320 ~~~~~~~~~~sp~~~~  335 (751)
                      .+..+..+.++|+.+.
T Consensus       329 vg~~~~~lavs~D~~~  344 (386)
T 3sjl_D          329 MGHEIDSINVSQDEKP  344 (386)
T ss_dssp             EEEEECEEEECSSSSC
T ss_pred             CCCCcceEEECCCCCe
Confidence            4556778999998763

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.43  E-value=5.7e-06  Score=87.79  Aligned_cols=222  Identities=9%  Similarity=0.004  Sum_probs=127.7

Q ss_pred             ccCCCcEEEEEECCCCCEEEEEeC-----CCcEEEEeCCCCeEEEEecc-----cCCcceEEEEEecCCCCcEEEEEE--
Q 004468           47 EGHQGCVNAISWNSKGSLLISGSD-----DTHINVWSYSSRKLLHSIET-----GHSANVFCTKFVPETSDELVVSGA--  114 (751)
Q Consensus        47 ~gH~~~V~~l~~s~dg~~LaSgs~-----Dg~I~IWd~~~~~~~~~l~~-----~h~~~V~~v~fsp~s~~~~l~sgs--  114 (751)
                      .+|-..+..|+|+++|+++++-..     +..|.+||+.+++.+..+..     .+...+..+++.|+. +..+++-.  
T Consensus        63 ~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~-g~~yvtd~~~  141 (343)
T 2qe8_A           63 IITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIH-NFVYISDPAP  141 (343)
T ss_dssp             CCCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTT-TEEEEEECCS
T ss_pred             ccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCC-CEEEEEcCcc
Confidence            356678999999999987776644     57899999999987766632     123457899999863 45566665  


Q ss_pred             -CCCcEEEEECCCCCCCCCCCC--CCCC---ceeecc--------------cCCceeEEEEecCCCCEEEEEeCCC-cEE
Q 004468          115 -GDAEVRLFNLSRFSGRGLDDN--AITP---SALYQC--------------HTRRVKKLAVEVGNPHVVWSASEDG-TLR  173 (751)
Q Consensus       115 -~Dg~V~vwd~~~~~~~~~~~~--~~~~---~~~~~~--------------h~~~V~~l~~sp~~~~~l~s~s~Dg-~I~  173 (751)
                       .++.|.+||+..+........  ...+   .....+              ....+..|+|+| +++.|+.+..++ .|.
T Consensus       142 ~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~-dg~~ly~~~~~~~~l~  220 (343)
T 2qe8_A          142 DDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDA-ENEWLYLSPMHSTSMY  220 (343)
T ss_dssp             GGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECT-TSCEEEEEESSCSEEE
T ss_pred             CCCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEecc-CCCEEEEEeCCCCeEE
Confidence             688999999975421110000  0000   000000              012468899999 556666665555 454


Q ss_pred             EEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccc
Q 004468          174 QHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTS  253 (751)
Q Consensus       174 iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~  253 (751)
                      .++........   .........+.            ..++......++++++ ++++++...++.|.+||...++..  
T Consensus       221 ~~~~~~~~~~~---~~~~~~~~~~~------------~~g~~g~pdgia~d~~-G~l~va~~~~~~V~~~d~~~G~~~--  282 (343)
T 2qe8_A          221 RIKSADLSNLQ---LTDAELGSKIE------------RYSEKPICDGISIDKD-HNIYVGDLAHSAIGVITSADRAYK--  282 (343)
T ss_dssp             EEEHHHHTCTT---CCHHHHHTTCE------------EEEECCSCSCEEECTT-CCEEEEEGGGTEEEEEETTTTEEE--
T ss_pred             EEEHHHhcCCC---CChhhhhcceE------------ecccCCCCceEEECCC-CCEEEEccCCCeEEEEECCCCCEE--
Confidence            44432111000   00000000000            0001123456889995 788888889999999998433210  


Q ss_pred             cCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEE
Q 004468          254 CQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLM  306 (751)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lw  306 (751)
                                  ....      ......+++++|.++|+.+++.+..+.+.+|
T Consensus       283 ------------~~~~------~~~~~~p~~va~~~~g~l~v~~~~~~~~~~f  317 (343)
T 2qe8_A          283 ------------LLVT------DEKLSWTDSFNFGSDGYLYFDCNQLHHSAPL  317 (343)
T ss_dssp             ------------EEEE------CGGGSCEEEEEECTTSCEEEEECCGGGSGGG
T ss_pred             ------------EEEE------CCceecCCeeEECCCCcEEEEeCcccccccc
Confidence                        0000      0011248999999999877777655544444

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.39  E-value=7.4e-06  Score=85.22  Aligned_cols=199  Identities=9%  Similarity=0.052  Sum_probs=119.9

Q ss_pred             EEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEec--ccC-CcceEEEEEecCCCCcEEEE----EEC-
Q 004468           44 RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIE--TGH-SANVFCTKFVPETSDELVVS----GAG-  115 (751)
Q Consensus        44 ~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~--~~h-~~~V~~v~fsp~s~~~~l~s----gs~-  115 (751)
                      ..+..+.+.++.++|+++|+++++...++.|.+|+.. ++......  .+. ...+.++++.|+  |.+++|    |.. 
T Consensus        79 ~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~d--G~l~~td~~~g~~~  155 (305)
T 3dr2_A           79 DVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARD--GAIWFTDPPFGLRK  155 (305)
T ss_dssp             EEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTT--SCEEEECCSGGGSC
T ss_pred             EEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCC--CCEEEeCcCCCccc
Confidence            4555677889999999999987777677889999986 54322210  111 234778999998  788886    332 


Q ss_pred             ------------CCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCC------CcEEEEec
Q 004468          116 ------------DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED------GTLRQHDF  177 (751)
Q Consensus       116 ------------Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~D------g~I~iwDl  177 (751)
                                  .+.|..||...+.           +..+. .......++|+| +++.|+.+...      +.|.+||+
T Consensus       156 ~~~~~~~~~~~~~~~v~~~d~~~g~-----------~~~~~-~~~~p~gl~~sp-dg~~lyv~~~~~~~~~~~~i~~~~~  222 (305)
T 3dr2_A          156 PSQGCPADPELAHHSVYRLPPDGSP-----------LQRMA-DLDHPNGLAFSP-DEQTLYVSQTPEQGHGSVEITAFAW  222 (305)
T ss_dssp             GGGSCCCCCSSSCEEEEEECSSSCC-----------CEEEE-EESSEEEEEECT-TSSEEEEEECCC---CCCEEEEEEE
T ss_pred             cccccccccccCCCeEEEEcCCCCc-----------EEEEe-cCCCCcceEEcC-CCCEEEEEecCCcCCCCCEEEEEEe
Confidence                        2456666664321           22222 445668899999 45544444443      78999998


Q ss_pred             CCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCC
Q 004468          178 RQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKR  257 (751)
Q Consensus       178 r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~  257 (751)
                      .... .        ....++...             .......+++.++ +++ .++..+ .|.+|+.. ++.+..+.  
T Consensus       223 ~~~~-l--------~~~~~~~~~-------------~~~~pdgi~~d~~-G~l-wv~~~~-gv~~~~~~-g~~~~~~~--  274 (305)
T 3dr2_A          223 RDGA-L--------HDRRHFASV-------------PDGLPDGFCVDRG-GWL-WSSSGT-GVCVFDSD-GQLLGHIP--  274 (305)
T ss_dssp             ETTE-E--------EEEEEEECC-------------SSSCCCSEEECTT-SCE-EECCSS-EEEEECTT-SCEEEEEE--
T ss_pred             cCCC-c--------cCCeEEEEC-------------CCCCCCeEEECCC-CCE-EEecCC-cEEEECCC-CCEEEEEE--
Confidence            7542 0        001111111             1122446788885 564 444444 49999974 32221110  


Q ss_pred             CCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEE
Q 004468          258 MSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMD  307 (751)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwd  307 (751)
                                    .    ..  .+++++|+|+++.|++++.+ .++.++
T Consensus       275 --------------~----~~--~~~~~~f~~d~~~L~it~~~-~l~~~~  303 (305)
T 3dr2_A          275 --------------T----PG--TASNCTFDQAQQRLFITGGP-CLWMLP  303 (305)
T ss_dssp             --------------C----SS--CCCEEEECTTSCEEEEEETT-EEEEEE
T ss_pred             --------------C----CC--ceeEEEEeCCCCEEEEEcCC-eEEEEE
Confidence                          0    11  37789999999999988875 444444

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.34  E-value=0.00011  Score=74.61  Aligned_cols=221  Identities=7%  Similarity=0.018  Sum_probs=131.9

Q ss_pred             CcEEEEEECCCCC-EEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCC
Q 004468           51 GCVNAISWNSKGS-LLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSG  129 (751)
Q Consensus        51 ~~V~~l~~s~dg~-~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~  129 (751)
                      ..+..++|++++. ++++-...+.|.++++........+ .........+++.|+. +.++++-...+.|.++++.... 
T Consensus        36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~-~~~~~~p~~ia~d~~~-~~lyv~d~~~~~I~~~~~~g~~-  112 (267)
T 1npe_A           36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTII-RQDLGSPEGIALDHLG-RTIFWTDSQLDRIEVAKMDGTQ-  112 (267)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEE-CTTCCCEEEEEEETTT-TEEEEEETTTTEEEEEETTSCS-
T ss_pred             CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEE-ECCCCCccEEEEEecC-CeEEEEECCCCEEEEEEcCCCC-
Confidence            4578999999655 5555556789999998765433333 2333568899999973 4566666677899999987421 


Q ss_pred             CCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeC--CCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceec
Q 004468          130 RGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASE--DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRS  207 (751)
Q Consensus       130 ~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~--Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  207 (751)
                               ..............++++|+++.++++...  .+.|..+++.....            ..+..        
T Consensus       113 ---------~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~------------~~~~~--------  163 (267)
T 1npe_A          113 ---------RRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR------------RILAQ--------  163 (267)
T ss_dssp             ---------CEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC------------EEEEC--------
T ss_pred             ---------EEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCc------------EEEEE--------
Confidence                     111122122457899999966677766654  46888888754220            11110        


Q ss_pred             ccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEE
Q 004468          208 LADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTF  287 (751)
Q Consensus       208 ~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~f  287 (751)
                           ........++++|+++.++++-...+.|.++|......              ..+..    . .  . ....+++
T Consensus       164 -----~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~--------------~~~~~----~-~--~-~P~gi~~  216 (267)
T 1npe_A          164 -----DNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGR--------------RKVLE----G-L--Q-YPFAVTS  216 (267)
T ss_dssp             -----TTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEE--------------EEEEE----C-C--C-SEEEEEE
T ss_pred             -----CCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCce--------------EEEec----C-C--C-CceEEEE
Confidence                 01235678999996556666666778999999864211              01100    0 0  1 2456665


Q ss_pred             cCCCCEEEE-EeCCCcEEEEECCCCCcceeeeecC-CCceeEEeCCC
Q 004468          288 SPNGEEVLL-SYSGEHVYLMDVNHAGGRAMRYTVG-DASKIMSFTPT  332 (751)
Q Consensus       288 spdg~~Ll~-~s~d~~I~lwdl~~~~~~~~~~~~~-~~~~~~~~sp~  332 (751)
                      .  +..|++ ....+.|+.+|..+++......... ..+..+++.|+
T Consensus       217 d--~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~  261 (267)
T 1npe_A          217 Y--GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALS  261 (267)
T ss_dssp             E--TTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEECS
T ss_pred             e--CCEEEEEECCCCeEEEEeCCCCCceEEEccccccccceeeecCc
Confidence            4  445554 4457899999998864333322111 12445555554

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=98.29  E-value=2.2e-05  Score=91.76  Aligned_cols=199  Identities=13%  Similarity=0.127  Sum_probs=123.5

Q ss_pred             EEEEECCCCCEEEEEeCCCc-------------EEEEeCCCCe----EEEEeccc-CCcceEEEEEecCCCCcEEE-EEE
Q 004468           54 NAISWNSKGSLLISGSDDTH-------------INVWSYSSRK----LLHSIETG-HSANVFCTKFVPETSDELVV-SGA  114 (751)
Q Consensus        54 ~~l~~s~dg~~LaSgs~Dg~-------------I~IWd~~~~~----~~~~l~~~-h~~~V~~v~fsp~s~~~~l~-sgs  114 (751)
                      ..++|+ ||+.|+.++.|..             |.+|++.+..    ++... .. |...+.++.|+|+  |++|+ +.+
T Consensus       178 ~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~-~~~~~~~~~~~~~SpD--g~~l~~~~~  253 (693)
T 3iuj_A          178 SGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGA-IPAQHHRYVGATVTED--DRFLLISAA  253 (693)
T ss_dssp             CCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESC-SGGGCCSEEEEEECTT--SCEEEEEEE
T ss_pred             ccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEec-CCCCCeEEEEEEEcCC--CCEEEEEEc
Confidence            467899 9999999988854             9999987654    23222 33 5556889999999  67665 433


Q ss_pred             C---CCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCC---CcEEEEecCCCCCCCCCCC
Q 004468          115 G---DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED---GTLRQHDFRQGSSCPPAGS  188 (751)
Q Consensus       115 ~---Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~D---g~I~iwDlr~~~~~~~~~~  188 (751)
                      .   +..|+++|+..+.+         ....+..+...+... |+++++.+++.+..+   +.|..+|+.++...     
T Consensus       254 ~~~~~~~i~~~d~~~~~~---------~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~-----  318 (693)
T 3iuj_A          254 NSTSGNRLYVKDLSQENA---------PLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPA-----  318 (693)
T ss_dssp             SSSSCCEEEEEETTSTTC---------CCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGG-----
T ss_pred             cCCCCcEEEEEECCCCCC---------ceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCcc-----
Confidence            2   25899999976421         245556666666555 666566676666554   57888888775410     


Q ss_pred             CCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCC--eEEEEeCCCCCCccccCCCCCCCCcccc
Q 004468          189 SHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDA--FARLYDRRMLPPLTSCQKRMSPPPCVNY  266 (751)
Q Consensus       189 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~--~IriwD~~~~~~~~~~~~~~~~~~~~~~  266 (751)
                         .. ..+..              +...+.  .|++++..++++...++  .|++||+.... ...+            
T Consensus       319 ---~~-~~l~~--------------~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~-~~~l------------  365 (693)
T 3iuj_A          319 ---HW-RDLIP--------------ERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGKR-VREV------------  365 (693)
T ss_dssp             ---GC-EEEEC--------------CCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSCE-EEEE------------
T ss_pred             ---cc-EEEec--------------CCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCCe-eEEe------------
Confidence               00 11110              111222  77885434444444554  68888876321 1110            


Q ss_pred             ccccccccCCccccceEEEEEcCCCCEEEEEeCC----CcEEEEECCCCC
Q 004468          267 FCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG----EHVYLMDVNHAG  312 (751)
Q Consensus       267 ~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d----~~I~lwdl~~~~  312 (751)
                          .+.   . ...+..+.++++++.|+....+    +.|+.||+.++.
T Consensus       366 ----~~p---~-~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~  407 (693)
T 3iuj_A          366 ----ALP---G-LGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGA  407 (693)
T ss_dssp             ----CCS---S-SSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred             ----ecC---C-CceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence                000   1 1136778889999888776655    899999998754

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.26  E-value=4.6e-05  Score=76.24  Aligned_cols=213  Identities=11%  Similarity=0.023  Sum_probs=130.0

Q ss_pred             ccccccEEeccCCCc--EEEEEECCCCCEEEEEeCCC--cEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEE
Q 004468           38 RRLSQERELEGHQGC--VNAISWNSKGSLLISGSDDT--HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSG  113 (751)
Q Consensus        38 ~~~~~~~~L~gH~~~--V~~l~~s~dg~~LaSgs~Dg--~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sg  113 (751)
                      ...+.++++ .|...  ...|.|+ ++.++.+.+.+|  .|+++|+.+++.+..+..+  ...+.....+.. +.+.+..
T Consensus        29 ~~~~vv~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~--~~~FgeGit~~g-~~ly~lt  103 (262)
T 3nol_A           29 YDYQIVHSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELG--KRYFGEGISDWK-DKIVGLT  103 (262)
T ss_dssp             EEEEEEEEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECC--TTCCEEEEEEET-TEEEEEE
T ss_pred             cceEEEEEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecC--CccceeEEEEeC-CEEEEEE
Confidence            345666777 45543  5789999 788888888876  8999999999999888432  345554444442 3555566


Q ss_pred             ECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCcc
Q 004468          114 AGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQEC  193 (751)
Q Consensus       114 s~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~  193 (751)
                      -.++.+.++|..+.          +.+.++.--.   ....+++++..+++|- .++.|.++|..+.+...         
T Consensus       104 w~~~~v~v~D~~t~----------~~~~ti~~~~---eG~glt~dg~~L~~Sd-Gs~~i~~iDp~T~~v~~---------  160 (262)
T 3nol_A          104 WKNGLGFVWNIRNL----------RQVRSFNYDG---EGWGLTHNDQYLIMSD-GTPVLRFLDPESLTPVR---------  160 (262)
T ss_dssp             SSSSEEEEEETTTC----------CEEEEEECSS---CCCCEEECSSCEEECC-SSSEEEEECTTTCSEEE---------
T ss_pred             eeCCEEEEEECccC----------cEEEEEECCC---CceEEecCCCEEEEEC-CCCeEEEEcCCCCeEEE---------
Confidence            67899999999875          4455554322   2233345455566554 47889999998865320         


Q ss_pred             ceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccc
Q 004468          194 RNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLS  273 (751)
Q Consensus       194 ~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (751)
                       .+  ....+        ......++.+.|.  ++++++..-.+..|.+.|.++++.+..+......+.+.    .    
T Consensus       161 -~I--~V~~~--------g~~~~~lNELe~~--~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~----~----  219 (262)
T 3nol_A          161 -TI--TVTAH--------GEELPELNELEWV--DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAG----P----  219 (262)
T ss_dssp             -EE--ECEET--------TEECCCEEEEEEE--TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSC----S----
T ss_pred             -EE--EeccC--------CccccccceeEEE--CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccc----c----
Confidence             00  00000        0011234556665  46666666578899999999988655443211000000    0    


Q ss_pred             cCCccccceEEEEEcCCCCEEEEEeCC
Q 004468          274 EHGRSSLHLTHVTFSPNGEEVLLSYSG  300 (751)
Q Consensus       274 ~~g~~~~~vt~v~fspdg~~Ll~~s~d  300 (751)
                       ........+.|+|+|+++.|++.+..
T Consensus       220 -~~~~~~vlNGIA~dp~~~~lfVTGK~  245 (262)
T 3nol_A          220 -LPSPIDVLNGIAWDKEHHRLFVTGKL  245 (262)
T ss_dssp             -CCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred             -ccCcCCceEEEEEcCCCCEEEEECCC
Confidence             00111247899999999988888763

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.22  E-value=5.8e-05  Score=81.32  Aligned_cols=250  Identities=12%  Similarity=0.043  Sum_probs=139.9

Q ss_pred             hhccCcCcccccccccchhh--hccccccEEec------cC-CCcEEEEEECCCCCEEEEEeCC------CcEEEEeCCC
Q 004468           17 TRHTDTRPDVNHSLQMHSSL--VRRLSQERELE------GH-QGCVNAISWNSKGSLLISGSDD------THINVWSYSS   81 (751)
Q Consensus        17 ~r~~~~~~~~~~~l~~~~~~--i~~~~~~~~L~------gH-~~~V~~l~~s~dg~~LaSgs~D------g~I~IWd~~~   81 (751)
                      +|.+....-...++.+.+..  -.+.+++++++      .. ...-..+..+|+| +++++..+      +.|.+.|..+
T Consensus        95 r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T  173 (462)
T 2ece_A           95 RRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYS  173 (462)
T ss_dssp             SCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTT
T ss_pred             CCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCC
Confidence            34443333334555555532  33446666663      11 1245678889999 88887666      7899999999


Q ss_pred             CeEEEEeccc-CC-cceEEEEEecCCCCcEEEEEE-------------------CCCcEEEEECCCCCCCCCCCCCCCCc
Q 004468           82 RKLLHSIETG-HS-ANVFCTKFVPETSDELVVSGA-------------------GDAEVRLFNLSRFSGRGLDDNAITPS  140 (751)
Q Consensus        82 ~~~~~~l~~~-h~-~~V~~v~fsp~s~~~~l~sgs-------------------~Dg~V~vwd~~~~~~~~~~~~~~~~~  140 (751)
                      ++.+.++..+ .. .--..+.|+|+  ++.+++..                   .+.+|.+||+.+.          +.+
T Consensus       174 ~~v~~~~~~~~~~~~~~Yd~~~~p~--~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~----------k~~  241 (462)
T 2ece_A          174 FEPLGKWEIDRGDQYLAYDFWWNLP--NEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKR----------KRI  241 (462)
T ss_dssp             CCEEEECCSBCTTCCCCCCEEEETT--TTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTT----------EEE
T ss_pred             CeEEEEEccCCCCccccceEEECCC--CCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCC----------cEe
Confidence            9999888433 22 22345888999  67888774                   4789999999863          334


Q ss_pred             eeeccc--CCceeEEEE--ecCCCCEEEEEe-----CCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCcee-cccC
Q 004468          141 ALYQCH--TRRVKKLAV--EVGNPHVVWSAS-----EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKR-SLAD  210 (751)
Q Consensus       141 ~~~~~h--~~~V~~l~~--sp~~~~~l~s~s-----~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~  210 (751)
                      .++..-  ......|.|  +|++...++++-     .+++|.+|....+.         .. ...++++...... .+..
T Consensus       242 ~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~---------~~-~~~vIdi~~~~v~~~lp~  311 (462)
T 2ece_A          242 HSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGK---------WN-AEKVIEIPAEPLEGNLPE  311 (462)
T ss_dssp             EEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTE---------EE-EEEEEEECCEECCSSCCG
T ss_pred             eEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCc---------ee-EEEEEeCCCccccccccc
Confidence            444431  133456666  886555666666     77899888765422         00 1112222111100 0100


Q ss_pred             CCC----CccceEEEEEeCCCCcEEEE-EeCCCeEEEEeCCCCCC---ccccCCCCCCCCccccccccccccCCc-cccc
Q 004468          211 PPK----QTLSLKSCDISSTRPHLLLV-GGSDAFARLYDRRMLPP---LTSCQKRMSPPPCVNYFCPMHLSEHGR-SSLH  281 (751)
Q Consensus       211 ~~~----~~~~v~~i~~sp~~~~~l~s-gs~D~~IriwD~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~  281 (751)
                      .+.    .......|.++|+ +++|.+ .-..+.|.+||+.....   +..+....    ..  ..+.+.  .|. -...
T Consensus       312 ~~~~f~~~~~~pa~I~lS~D-GrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG----~~--~~~~~~--~G~~~~gg  382 (462)
T 2ece_A          312 ILKPFKAVPPLVTDIDISLD-DKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGG----IF--HRADHP--AGHKLTGA  382 (462)
T ss_dssp             GGGGGTEECCCCCCEEECTT-SCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBT----TT--TCBCCT--TSCCCCSC
T ss_pred             cccccccCCCceeEEEECCC-CCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCC----ee--cccccc--ccccCCCC
Confidence            000    0134678999996 455555 45578999999863321   11111000    00  000000  000 0012


Q ss_pred             eEEEEEcCCCCEEEEEe
Q 004468          282 LTHVTFSPNGEEVLLSY  298 (751)
Q Consensus       282 vt~v~fspdg~~Ll~~s  298 (751)
                      ...+.++|||++|+++.
T Consensus       383 Pr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          383 PQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             CCCEEECTTSSEEEEEC
T ss_pred             CCEEEEcCCCCEEEEEc
Confidence            46789999999999988

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.20  E-value=0.00011  Score=79.22  Aligned_cols=212  Identities=14%  Similarity=0.131  Sum_probs=119.3

Q ss_pred             CCCCEEE-EEeCCCcEEEEeCCCC----eEEEEec-------ccCCcceEEEEEecCCCCcEEEEEECC------CcEEE
Q 004468           60 SKGSLLI-SGSDDTHINVWSYSSR----KLLHSIE-------TGHSANVFCTKFVPETSDELVVSGAGD------AEVRL  121 (751)
Q Consensus        60 ~dg~~La-Sgs~Dg~I~IWd~~~~----~~~~~l~-------~~h~~~V~~v~fsp~s~~~~l~sgs~D------g~V~v  121 (751)
                      .++++|. +|-.+.+|.|.|+.+.    +...++.       .+ ...-..+..+|+  | +++++..+      +.|.+
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g-~s~Ph~~~~~pd--G-i~Vs~~g~~~g~~~g~v~v  168 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSG-YSRLHTVHCGPD--A-IYISALGNEEGEGPGGILM  168 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHC-EEEEEEEEECSS--C-EEEEEEEETTSCSCCEEEE
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccC-CCcccceeECCC--e-EEEEcCCCcCCCCCCeEEE
Confidence            7777665 5567889999998755    5555551       11 123456777888  7 77777766      78999


Q ss_pred             EECCCCCCCCCCCCCCCCceeeccc--C-CceeEEEEecCCCCEEEEEe-------------------CCCcEEEEecCC
Q 004468          122 FNLSRFSGRGLDDNAITPSALYQCH--T-RRVKKLAVEVGNPHVVWSAS-------------------EDGTLRQHDFRQ  179 (751)
Q Consensus       122 wd~~~~~~~~~~~~~~~~~~~~~~h--~-~~V~~l~~sp~~~~~l~s~s-------------------~Dg~I~iwDlr~  179 (751)
                      .|..+.          +.+..+..-  . ..-+.+.|+| +.+.+++..                   .+.+|.+||+.+
T Consensus       169 lD~~T~----------~v~~~~~~~~~~~~~~Yd~~~~p-~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~  237 (462)
T 2ece_A          169 LDHYSF----------EPLGKWEIDRGDQYLAYDFWWNL-PNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRK  237 (462)
T ss_dssp             ECTTTC----------CEEEECCSBCTTCCCCCCEEEET-TTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTT
T ss_pred             EECCCC----------eEEEEEccCCCCccccceEEECC-CCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCC
Confidence            999865          334444321  1 2235688899 556776663                   368999999987


Q ss_pred             CCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEE--eCCCCcEEEEEe------CCCeEEEEeCCCCCCc
Q 004468          180 GSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDI--SSTRPHLLLVGG------SDAFARLYDRRMLPPL  251 (751)
Q Consensus       180 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~--sp~~~~~l~sgs------~D~~IriwD~~~~~~~  251 (751)
                      ++..            .-+++.          . .......+.|  +|+ ++++.+++      .++.|.+|....+. .
T Consensus       238 ~k~~------------~tI~vg----------~-~g~~P~~i~f~~~Pd-g~~aYV~~e~~~~~Lss~V~v~~~d~g~-~  292 (462)
T 2ece_A          238 RKRI------------HSLTLG----------E-ENRMALELRPLHDPT-KLMGFINMVVSLKDLSSSIWLWFYEDGK-W  292 (462)
T ss_dssp             TEEE------------EEEESC----------T-TEEEEEEEEECSSTT-CCEEEEEEEEETTTCCEEEEEEEEETTE-E
T ss_pred             CcEe------------eEEecC----------C-CCCccceeEeeECCC-CCEEEEEEeeeccCCCceEEEEEecCCc-e
Confidence            5421            011110          0 1122334444  996 55555544      67788877654321 0


Q ss_pred             cccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeC-CCcEEEEECCCC
Q 004468          252 TSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GEHVYLMDVNHA  311 (751)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~-d~~I~lwdl~~~  311 (751)
                      ...+.-..+...+....+.-....+........|.+||||++|.++.. .+.|.+||+...
T Consensus       293 ~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~  353 (462)
T 2ece_A          293 NAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNP  353 (462)
T ss_dssp             EEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSST
T ss_pred             eEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCC
Confidence            000000000000000000000000000113678999999999988776 789999999753

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.17  E-value=2.9e-05  Score=84.32  Aligned_cols=106  Identities=11%  Similarity=0.029  Sum_probs=74.4

Q ss_pred             CCCCEEEEEeC-C----CcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEE----------CCCcEEEEEC
Q 004468           60 SKGSLLISGSD-D----THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGA----------GDAEVRLFNL  124 (751)
Q Consensus        60 ~dg~~LaSgs~-D----g~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs----------~Dg~V~vwd~  124 (751)
                      ++++.+..... +    +.|.++|..+++.+.++..+. .+  .++++|+  +++|+.+.          .++.|.++|.
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~-~P--gia~SpD--gk~lyVan~~~~~~~~G~~~~~VsviD~  156 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGF-LP--HPVAAED--GSFFAQASTVFERIARGKRTDYVEVFDP  156 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECS-SC--EEEECTT--SSCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCC-CC--ceEECCC--CCEEEEEeccccccccCCCCCEEEEEEC
Confidence            46665555543 3    699999999999999995554 34  8999999  67666654          4679999999


Q ss_pred             CCCCCCCCCCCCCCCceeeccc-------CCceeEEEEecCCCCEEEEEeC--CCcEEEEecCCCC
Q 004468          125 SRFSGRGLDDNAITPSALYQCH-------TRRVKKLAVEVGNPHVVWSASE--DGTLRQHDFRQGS  181 (751)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~h-------~~~V~~l~~sp~~~~~l~s~s~--Dg~I~iwDlr~~~  181 (751)
                      .+.          +.+..+.--       ......++|+|+ +++++.+..  +++|.+.|+.+.+
T Consensus       157 ~t~----------~vv~~I~v~g~~r~~~g~~P~~~~~spD-Gk~lyV~n~~~~~~VsVID~~t~k  211 (426)
T 3c75_H          157 VTF----------LPIADIELPDAPRFLVGTYQWMNALTPD-NKNLLFYQFSPAPAVGVVDLEGKT  211 (426)
T ss_dssp             TTC----------CEEEEEEETTCCCCCBSCCGGGSEECTT-SSEEEEEECSSSCEEEEEETTTTE
T ss_pred             CCC----------cEEEEEECCCccccccCCCcceEEEcCC-CCEEEEEecCCCCeEEEEECCCCe
Confidence            874          334433211       234567899994 555555553  6889999999876

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.08  E-value=0.00054  Score=67.84  Aligned_cols=211  Identities=13%  Similarity=0.119  Sum_probs=128.2

Q ss_pred             ccccEEeccCCC--cEEEEEECCCCCEEEEEeCCC--cEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEEC
Q 004468           40 LSQERELEGHQG--CVNAISWNSKGSLLISGSDDT--HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG  115 (751)
Q Consensus        40 ~~~~~~L~gH~~--~V~~l~~s~dg~~LaSgs~Dg--~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~  115 (751)
                      .+.++++ .|..  -+..|.|+. +.++.|.+.+|  .|+++|+.+++.+..+...  ...+.....+.. +.+++..-.
T Consensus         9 ~~v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~--~~~fgeGi~~~~-~~ly~ltw~   83 (243)
T 3mbr_X            9 YRVVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVP--PPYFGAGIVAWR-DRLIQLTWR   83 (243)
T ss_dssp             EEEEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECC--TTCCEEEEEEET-TEEEEEESS
T ss_pred             eEEEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCC--CCcceeEEEEeC-CEEEEEEee
Confidence            4556666 5654  477899986 77788888764  8999999999998887332  233433333332 456666677


Q ss_pred             CCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccce
Q 004468          116 DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRN  195 (751)
Q Consensus       116 Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~  195 (751)
                      ++.+.++|..+.          +.+.++.... .=..++  +++..+++|- .++.|.++|..+.+...           
T Consensus        84 ~~~v~v~D~~tl----------~~~~ti~~~~-~Gwglt--~dg~~L~vSd-gs~~l~~iDp~t~~~~~-----------  138 (243)
T 3mbr_X           84 NHEGFVYDLATL----------TPRARFRYPG-EGWALT--SDDSHLYMSD-GTAVIRKLDPDTLQQVG-----------  138 (243)
T ss_dssp             SSEEEEEETTTT----------EEEEEEECSS-CCCEEE--ECSSCEEEEC-SSSEEEEECTTTCCEEE-----------
T ss_pred             CCEEEEEECCcC----------cEEEEEeCCC-CceEEe--eCCCEEEEEC-CCCeEEEEeCCCCeEEE-----------
Confidence            999999999874          4455554322 223444  5455666665 47899999998865320           


Q ss_pred             EEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccC
Q 004468          196 ILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEH  275 (751)
Q Consensus       196 ~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (751)
                       -+....        .+.....++.+.+.  ++++++..-.+..|.+.|.++++.+..+......+....      .  .
T Consensus       139 -~I~V~~--------~g~~~~~lNeLe~~--~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~------~--~  199 (243)
T 3mbr_X          139 -SIKVTA--------GGRPLDNLNELEWV--NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADA------L--T  199 (243)
T ss_dssp             -EEECEE--------TTEECCCEEEEEEE--TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTS------C--C
T ss_pred             -EEEEcc--------CCcccccceeeEEe--CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCcccccc------c--c
Confidence             011100        00011234556665  456665555788999999999886554432211110000      0  0


Q ss_pred             CccccceEEEEEcCCCCEEEEEeC
Q 004468          276 GRSSLHLTHVTFSPNGEEVLLSYS  299 (751)
Q Consensus       276 g~~~~~vt~v~fspdg~~Ll~~s~  299 (751)
                      .......+.|+++|+++.|++.+.
T Consensus       200 ~~~~~vlNGIA~d~~~~~lfVTGK  223 (243)
T 3mbr_X          200 DSTNDVLNGIAFDAEHDRLFVTGK  223 (243)
T ss_dssp             CTTSSCEEEEEEETTTTEEEEEET
T ss_pred             CCcCCceEEEEEcCCCCEEEEECC
Confidence            011124789999999888887775

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.07  E-value=0.00079  Score=67.54  Aligned_cols=226  Identities=11%  Similarity=0.137  Sum_probs=138.1

Q ss_pred             EEeccCCCcEEEEEECCCCC-EEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEE
Q 004468           44 RELEGHQGCVNAISWNSKGS-LLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLF  122 (751)
Q Consensus        44 ~~L~gH~~~V~~l~~s~dg~-~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vw  122 (751)
                      +.|.|-.+.+..|+|+|++. ++|+...++.|...|.. ++.+..+..+-....-.|++.++  +.++++.-.++.+.++
T Consensus        20 ~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~--g~~~vs~E~~~~l~~~   96 (255)
T 3qqz_A           20 KEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGD--NQFVISDERDYAIYVI   96 (255)
T ss_dssp             EECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECST--TEEEEEETTTTEEEEE
T ss_pred             eECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCC--CEEEEEECCCCcEEEE
Confidence            56778778999999999765 55557788899999988 88887774343456888888887  6777776678889999


Q ss_pred             ECCCCCCCCCCCCCCCCceee------cccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceE
Q 004468          123 NLSRFSGRGLDDNAITPSALY------QCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNI  196 (751)
Q Consensus       123 d~~~~~~~~~~~~~~~~~~~~------~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~  196 (751)
                      ++..... .      ..+...      ...+...-.|+|.|.+ +.|+++.+.....+|.+.. ..       ......+
T Consensus        97 ~v~~~~~-i------~~~~~~~~~~~~~~~N~g~EGLA~d~~~-~~L~va~E~~p~~i~~~~g-~~-------~~~~l~i  160 (255)
T 3qqz_A           97 SLTPNSE-V------KILKKIKIPLQESPTNCGFEGLAYSRQD-HTFWFFKEKNPIEVYKVNG-LL-------SSNELHI  160 (255)
T ss_dssp             EECTTCC-E------EEEEEEECCCSSCCCSSCCEEEEEETTT-TEEEEEEESSSEEEEEEES-TT-------CSSCCEE
T ss_pred             EcCCCCe-e------eeeeeeccccccccccCCcceEEEeCCC-CEEEEEECcCCceEEEEcc-cc-------cCCceee
Confidence            8875321 0      001111      1234556899999954 4455555554555555541 10       0011122


Q ss_pred             EEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCC
Q 004468          197 LLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHG  276 (751)
Q Consensus       197 l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  276 (751)
                      +.+...       ........+.+++++|..+++++.......|.++|... +.+..+...           +.... -.
T Consensus       161 ~~~~~~-------~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g-~~~~~~~L~-----------~g~~~-l~  220 (255)
T 3qqz_A          161 SKDKAL-------QRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVG-EVIGEMSLT-----------KGSRG-LS  220 (255)
T ss_dssp             EECHHH-------HHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTC-CEEEEEECS-----------TTGGG-CS
T ss_pred             ecchhh-------ccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCC-CEEEEEEcC-----------CccCC-cc
Confidence            211100       00012235689999998888899988999999999763 332222110           00000 00


Q ss_pred             ccccceEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 004468          277 RSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVN  309 (751)
Q Consensus       277 ~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~  309 (751)
                      +.-...-.|+|.++|+ |++.+..+.+|.|.-.
T Consensus       221 ~~~~qpEGia~d~~G~-lyIvsE~n~~y~f~~~  252 (255)
T 3qqz_A          221 HNIKQAEGVAMDASGN-IYIVSEPNRFYRFTPQ  252 (255)
T ss_dssp             SCCCSEEEEEECTTCC-EEEEETTTEEEEEEC-
T ss_pred             cccCCCCeeEECCCCC-EEEEcCCceEEEEEec
Confidence            0011367899999998 5555777788888643

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.04  E-value=3.9e-05  Score=68.28  Aligned_cols=109  Identities=20%  Similarity=0.176  Sum_probs=95.0

Q ss_pred             CcchhHHHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCC
Q 004468          359 GLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDS  438 (751)
Q Consensus       359 ~~~~~~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~  438 (751)
                      .|+..+.....++..+..|+ |..|+..|+++|...+..      ...|.+++.++...+   +...|+.++.+++.++|
T Consensus         9 nP~~a~~~~~~G~~~~~~g~-~~~A~~~~~~al~~~p~~------~~~~~~~~~~~~~~~---~~~~A~~~~~~al~~~p   78 (126)
T 4gco_A            9 NPELAQEEKNKGNEYFKKGD-YPTAMRHYNEAVKRDPEN------AILYSNRAACLTKLM---EFQRALDDCDTCIRLDS   78 (126)
T ss_dssp             CHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCT
T ss_pred             CHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCC------HHHHHHHhhHHHhhc---cHHHHHHHHHHHHHhhh
Confidence            45666777888899999998 999999999999877654      457889999988765   45679999999999999


Q ss_pred             CCcchHHHHHHHHHHhcchHHHHHHHHHhcccCCCChhh
Q 004468          439 SSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVM  477 (751)
Q Consensus       439 ~~~~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~~~  477 (751)
                      .+.++++.++.++..++++.+|..+++......|.+...
T Consensus        79 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a  117 (126)
T 4gco_A           79 KFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEA  117 (126)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             hhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHH
Confidence            999999999999999999999999999999999987654

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.03  E-value=0.00022  Score=71.31  Aligned_cols=211  Identities=9%  Similarity=0.006  Sum_probs=127.8

Q ss_pred             cccccEEeccCCC--cEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECC
Q 004468           39 RLSQERELEGHQG--CVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD  116 (751)
Q Consensus        39 ~~~~~~~L~gH~~--~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~D  116 (751)
                      ..+.++++ .|..  -...|.|+ ++.+..+.+.+|.|+++|+.+++.+..+ ..  ...+.....+.. +.+++..-.+
T Consensus        42 ~~~Vv~~~-phd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~--~~~FgeGit~~g-~~Ly~ltw~~  115 (268)
T 3nok_A           42 VAHIIREY-PHATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RL--GNIFAEGLASDG-ERLYQLTWTE  115 (268)
T ss_dssp             EEEEEEEE-ECCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-EC--TTCCEEEEEECS-SCEEEEESSS
T ss_pred             ceEEEEEE-cCCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CC--CCcceeEEEEeC-CEEEEEEccC
Confidence            33566666 3543  35789998 4788889999999999999999988877 33  234443333342 4666667789


Q ss_pred             CcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceE
Q 004468          117 AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNI  196 (751)
Q Consensus       117 g~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~  196 (751)
                      +.+.+||..+.          +.+.++..- ..-..++  +++..++ .+..++.|.++|..+.+...          .+
T Consensus       116 ~~v~V~D~~Tl----------~~~~ti~~~-~eGwGLt--~Dg~~L~-vSdGs~~l~~iDp~T~~v~~----------~I  171 (268)
T 3nok_A          116 GLLFTWSGMPP----------QRERTTRYS-GEGWGLC--YWNGKLV-RSDGGTMLTFHEPDGFALVG----------AV  171 (268)
T ss_dssp             CEEEEEETTTT----------EEEEEEECS-SCCCCEE--EETTEEE-EECSSSEEEEECTTTCCEEE----------EE
T ss_pred             CEEEEEECCcC----------cEEEEEeCC-CceeEEe--cCCCEEE-EECCCCEEEEEcCCCCeEEE----------EE
Confidence            99999999875          445555432 2223444  4344444 44568899999988865320          01


Q ss_pred             EEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCC
Q 004468          197 LLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHG  276 (751)
Q Consensus       197 l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  276 (751)
                        ..        ...+.....++.+.|.  ++++++..-.+..|.+.|.++++.+..+....        ..+.......
T Consensus       172 --~V--------~~~g~~v~~lNeLe~~--dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~--------L~~~~~~~~~  231 (268)
T 3nok_A          172 --QV--------KLRGQPVELINELECA--NGVIYANIWHSSDVLEIDPATGTVVGVIDASA--------LTRAVAGQVT  231 (268)
T ss_dssp             --EC--------EETTEECCCEEEEEEE--TTEEEEEETTCSEEEEECTTTCBEEEEEECHH--------HHHHHTTTCC
T ss_pred             --Ee--------CCCCcccccccccEEe--CCEEEEEECCCCeEEEEeCCCCcEEEEEECCC--------Cccccccccc
Confidence              00        0011112245667776  45666655578899999999987655442110        0000000000


Q ss_pred             ccccceEEEEEcCCCCEEEEEeC
Q 004468          277 RSSLHLTHVTFSPNGEEVLLSYS  299 (751)
Q Consensus       277 ~~~~~vt~v~fspdg~~Ll~~s~  299 (751)
                      ......+.|+|+|+++.|++.+.
T Consensus       232 ~~~~vlNGIA~dp~~~rlfVTGK  254 (268)
T 3nok_A          232 NPEAVLNGIAVEPGSGRIFMTGK  254 (268)
T ss_dssp             CTTCCEEEEEECTTTCCEEEEET
T ss_pred             CcCCceEEEEEcCCCCEEEEeCC
Confidence            11124789999999887777664

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=97.95  E-value=8.3e-05  Score=82.91  Aligned_cols=241  Identities=7%  Similarity=0.008  Sum_probs=138.1

Q ss_pred             ccccccEEeccC-CCcEEEEEE-C-CCCCEEEEEe------------------CCCcEEEEeCCCCeEEEEecccCCcce
Q 004468           38 RRLSQERELEGH-QGCVNAISW-N-SKGSLLISGS------------------DDTHINVWSYSSRKLLHSIETGHSANV   96 (751)
Q Consensus        38 ~~~~~~~~L~gH-~~~V~~l~~-s-~dg~~LaSgs------------------~Dg~I~IWd~~~~~~~~~l~~~h~~~V   96 (751)
                      ..+++.+.++-- ...+..+++ + |+++++..++                  .++.|.+.|..+.+.+.++..+-  +-
T Consensus       120 ~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg--~p  197 (595)
T 1fwx_A          120 DVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSG--NL  197 (595)
T ss_dssp             TTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESS--CC
T ss_pred             CCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEEEEEEeCC--Cc
Confidence            334445533321 235788998 5 8999998885                  35679999999999988885432  45


Q ss_pred             EEEEEecCCCCcEEEEEECCC--------------------------------------cEEEEECCCCCCCCCCCCCCC
Q 004468           97 FCTKFVPETSDELVVSGAGDA--------------------------------------EVRLFNLSRFSGRGLDDNAIT  138 (751)
Q Consensus        97 ~~v~fsp~s~~~~l~sgs~Dg--------------------------------------~V~vwd~~~~~~~~~~~~~~~  138 (751)
                      .-++++|+  |+++++++.+.                                      .|.|.|..+..+        .
T Consensus       198 d~~~~spd--Gk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~--------~  267 (595)
T 1fwx_A          198 DNCDADYE--GKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEAS--------S  267 (595)
T ss_dssp             CCEEECSS--SSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGC--------C
T ss_pred             cceEECCC--CCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCC--------c
Confidence            67889998  78888777553                                      244555543100        1


Q ss_pred             C-ceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccc
Q 004468          139 P-SALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLS  217 (751)
Q Consensus       139 ~-~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  217 (751)
                      . +..+.. .....++.++|++..+++++..+.+|.++|+.+.+....  ..-.....++....            -...
T Consensus       268 ~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~--~~l~~~~~v~~~v~------------vG~g  332 (595)
T 1fwx_A          268 LFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFY--ENADPRSAVVAEPE------------LGLG  332 (595)
T ss_dssp             SSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHH--SCCCGGGGEEECCB------------CCSC
T ss_pred             eeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccc--cccCcccceEEEcC------------CCCC
Confidence            1 223322 234567899996666777777899999999986421000  00000001111111            1234


Q ss_pred             eEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEE
Q 004468          218 LKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLS  297 (751)
Q Consensus       218 v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~  297 (751)
                      ...++|+|+ ++..++.-.|+.|.+||+....  ..+.... ....+... +.+.. -||.. .-..++++|||++|++.
T Consensus       333 P~h~aF~~d-G~aY~t~~ldsqV~kwdi~~a~--~~~~g~~-~~~vi~ki-dV~yq-pGh~~-~~~g~t~~~DGk~l~~~  405 (595)
T 1fwx_A          333 PLHTAFDGR-GNAYTSLFLDSQVVKWNIEDAI--RAYAGEK-VDPIKDKL-DVHYQ-PGHLK-TVMGETLDATNDWLVCL  405 (595)
T ss_dssp             EEEEEECTT-SEEEEEETTTTEEEEEEHHHHH--HHHHTCS-CCCEEEEE-ECSSC-EEEEE-ETTTTSTTCCSSEEEEE
T ss_pred             cceEEECCC-CeEEEEEecCCcEEEEEhhHhh--hhhcccc-cceeEEEe-ecccc-cccce-eccceEeCCCCCEEEEc
Confidence            678899996 5777788899999999987510  0000000 00011111 11110 01111 01234578999999988


Q ss_pred             eC-C-CcE-----------EEEECCCCC
Q 004468          298 YS-G-EHV-----------YLMDVNHAG  312 (751)
Q Consensus       298 s~-d-~~I-----------~lwdl~~~~  312 (751)
                      .. . ..+           .|+|+.+++
T Consensus       406 Nk~skdr~~~~gp~~~~~~ql~dis~~~  433 (595)
T 1fwx_A          406 SKFSKDRFLNVGPLKPENDQLIDISGDK  433 (595)
T ss_dssp             ESCCTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred             CCCCccccccCCCCCCCcceEEEcCCCc
Confidence            75 2 344           899996644

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=97.93  E-value=0.0076  Score=63.65  Aligned_cols=208  Identities=8%  Similarity=0.022  Sum_probs=131.3

Q ss_pred             CcEEEEEECCCCC-EEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCC
Q 004468           51 GCVNAISWNSKGS-LLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSG  129 (751)
Q Consensus        51 ~~V~~l~~s~dg~-~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~  129 (751)
                      ..+..|+|++... ++.+-...+.|..+++........+ .........+++.+.. +.++++-...+.|.+.++.... 
T Consensus        73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~-~~~~~~p~glavd~~~-g~ly~~d~~~~~I~~~~~dG~~-  149 (349)
T 3v64_C           73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVV-STGLESPGGLAVDWVH-DKLYWTDSGTSRIEVANLDGAH-  149 (349)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE-CSSCSCCCEEEEETTT-TEEEEEETTTTEEEEEETTSCS-
T ss_pred             CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEE-eCCCCCccEEEEecCC-CeEEEEcCCCCeEEEEcCCCCc-
Confidence            3478999997544 5555567788999998765433333 2233456788998863 5666777778899999987421 


Q ss_pred             CCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCC-CcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecc
Q 004468          130 RGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED-GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSL  208 (751)
Q Consensus       130 ~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~D-g~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  208 (751)
                               ....+...-.....|++.|.++.++++-... +.|..+++......            .+.          
T Consensus       150 ---------~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~------------~~~----------  198 (349)
T 3v64_C          150 ---------RKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRR------------IIA----------  198 (349)
T ss_dssp             ---------CEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE------------ESC----------
T ss_pred             ---------eEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcE------------EEE----------
Confidence                     1222223345678999999777888887776 88888887653211            000          


Q ss_pred             cCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEc
Q 004468          209 ADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFS  288 (751)
Q Consensus       209 ~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fs  288 (751)
                         .......+.++|+|.++.++++-...+.|..+|+.....              ..+....       ......+++ 
T Consensus       199 ---~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~--------------~~~~~~~-------~~~P~giav-  253 (349)
T 3v64_C          199 ---DTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHR--------------KAVISQG-------LPHPFAITV-  253 (349)
T ss_dssp             ---CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC--------------EEEECSS-------CSSEEEEEE-
T ss_pred             ---ECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCce--------------EEEEeCC-------CCCceEEEE-
Confidence               011235688999987666666666778899999763211              0110000       113567788 


Q ss_pred             CCCCEEEEEeCCCcEEEEECCCCCcceee
Q 004468          289 PNGEEVLLSYSGEHVYLMDVNHAGGRAMR  317 (751)
Q Consensus       289 pdg~~Ll~~s~d~~I~lwdl~~~~~~~~~  317 (751)
                      ..+..+++-...+.|..++..+++.....
T Consensus       254 ~~~~ly~td~~~~~V~~~~~~~G~~~~~i  282 (349)
T 3v64_C          254 FEDSLYWTDWHTKSINSANKFTGKNQEII  282 (349)
T ss_dssp             ETTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred             ECCEEEEecCCCCeEEEEEccCCCccEEe
Confidence            45555666667889999996665544333

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=97.92  E-value=0.0023  Score=66.23  Aligned_cols=248  Identities=10%  Similarity=0.023  Sum_probs=138.0

Q ss_pred             ccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCC
Q 004468           38 RRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA  117 (751)
Q Consensus        38 ~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg  117 (751)
                      ...+.+..+... .....++|+++|+++++-...+.|..||.... ....+  .-...+..+++.|+  ++++++.....
T Consensus        20 ~~~~~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~--~~~~~p~gia~~~d--G~l~vad~~~~   93 (306)
T 2p4o_A           20 APAKIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHA--TVEGKVSGLAFTSN--GDLVATGWNAD   93 (306)
T ss_dssp             CCEEEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEE--ECSSEEEEEEECTT--SCEEEEEECTT
T ss_pred             CCceEeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEE--eCCCCceeEEEcCC--CcEEEEeccCC
Confidence            344555566443 56789999999998888878899999998754 33333  12356889999998  77766654433


Q ss_pred             --cEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccce
Q 004468          118 --EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRN  195 (751)
Q Consensus       118 --~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~  195 (751)
                        .|..+|...+.-        ..+..+. .......++..+ ++..+++-..++.|..+|...+..            .
T Consensus        94 ~~~v~~~d~~~g~~--------~~~~~~~-~~~~~~g~~~~~-~~~~~v~d~~~g~i~~~d~~~~~~------------~  151 (306)
T 2p4o_A           94 SIPVVSLVKSDGTV--------ETLLTLP-DAIFLNGITPLS-DTQYLTADSYRGAIWLIDVVQPSG------------S  151 (306)
T ss_dssp             SCEEEEEECTTSCE--------EEEEECT-TCSCEEEEEESS-SSEEEEEETTTTEEEEEETTTTEE------------E
T ss_pred             cceEEEEcCCCCeE--------EEEEeCC-CccccCcccccC-CCcEEEEECCCCeEEEEeCCCCcE------------e
Confidence              355566554210        1111111 122234555544 455666655688888888765320            0


Q ss_pred             EEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCC-CCCccccCCCCCCCCcccccccccccc
Q 004468          196 ILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM-LPPLTSCQKRMSPPPCVNYFCPMHLSE  274 (751)
Q Consensus       196 ~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (751)
                      +....  +... ...........+.+  +|++..++++-...+.|..||+.. ++. ..          ...+..  .  
T Consensus       152 v~~~~--~~~~-~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~-~~----------~~~~~~--~--  211 (306)
T 2p4o_A          152 IWLEH--PMLA-RSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKP-GE----------PEIFVE--Q--  211 (306)
T ss_dssp             EEEEC--GGGS-CSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCB-CC----------CEEEEE--S--
T ss_pred             EEEEC--Cccc-cccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCC-Cc----------cEEEec--c--
Confidence            00000  0000 00000111233444  775445666666778999999864 211 00          011100  0  


Q ss_pred             CCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccee-eeec-CCCceeEEeC---CCCCCcccC
Q 004468          275 HGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAM-RYTV-GDASKIMSFT---PTLNGLELQ  339 (751)
Q Consensus       275 ~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~-~~~~-~~~~~~~~~s---p~~~~~~~~  339 (751)
                           .....++++++|+.+++....+.|.+||... ..... .... ...+..++|.   |+.+.+...
T Consensus       212 -----~~P~gi~vd~dG~l~va~~~~~~V~~~~~~G-~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt  275 (306)
T 2p4o_A          212 -----TNIDDFAFDVEGNLYGATHIYNSVVRIAPDR-STTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVV  275 (306)
T ss_dssp             -----CCCSSEEEBTTCCEEEECBTTCCEEEECTTC-CEEEEECGGGTCTTEEEEEECCSTTTTTEEEEE
T ss_pred             -----CCCCCeEECCCCCEEEEeCCCCeEEEECCCC-CEEEEeecccccCCceEEEEecccCCCCEEEEE
Confidence                 1245689999998877777789999999763 32111 1122 2456677887   665555443

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=97.88  E-value=2.3e-06  Score=91.95  Aligned_cols=166  Identities=10%  Similarity=0.024  Sum_probs=83.9

Q ss_pred             cccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCC-CCcEEEEEECCC
Q 004468           39 RLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPET-SDELVVSGAGDA  117 (751)
Q Consensus        39 ~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s-~~~~l~sgs~Dg  117 (751)
                      +.++..+++.  +.+.+..+..++.++++++.|+.|+.||..+|+.+..+ ..+.....  ..+|.- .+..|++|+.|+
T Consensus        28 tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~-~~~~~~~~--~~sp~~~~~~~v~~g~~dg  102 (369)
T 2hz6_A           28 TGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKL-PFTIPELV--QASPCRSSDGILYMGKKQD  102 (369)
T ss_dssp             TCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEEC-SCCHHHHH--TTCSCC-----CCCCEEEE
T ss_pred             CCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeee-eccCcccc--ccCceEecCCEEEEEeCCC
Confidence            4445555554  45556666678888888899999999999988877665 22211110  111210 145788888999


Q ss_pred             cEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEE
Q 004468          118 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNIL  197 (751)
Q Consensus       118 ~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l  197 (751)
                      .|+.||..++.          .+..+..+.    ...++| .+..+++++.|+.|+.||.++++..              
T Consensus       103 ~v~a~D~~tG~----------~~w~~~~~~----~~~~~p-~~~~v~~~~~dg~v~a~d~~tG~~~--------------  153 (369)
T 2hz6_A          103 IWYVIDLLTGE----------KQQTLSSAF----ADSLSP-STSLLYLGRTEYTITMYDTKTRELR--------------  153 (369)
T ss_dssp             EEEEECCC-------------------------------------EEEEEEEEEEECCCSSSSSCC--------------
T ss_pred             EEEEEECCCCc----------EEEEecCCC----cccccc-cCCEEEEEecCCEEEEEECCCCCEE--------------
Confidence            99999998752          233443332    234566 5567778899999999999988643              


Q ss_pred             EecccCceecccCCCCCccceEEEEEeCC--CCcEEEEEeCCCeEEEEeCCCCCCc
Q 004468          198 LDLRCGAKRSLADPPKQTLSLKSCDISST--RPHLLLVGGSDAFARLYDRRMLPPL  251 (751)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~v~~i~~sp~--~~~~l~sgs~D~~IriwD~~~~~~~  251 (751)
                      |....+             ......+.++  -...+++++.|+.|+.||.++++.+
T Consensus       154 W~~~~~-------------~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~  196 (369)
T 2hz6_A          154 WNATYF-------------DYAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVL  196 (369)
T ss_dssp             CEEEEE-------------EECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEE
T ss_pred             EeEecc-------------cccCccccCCccccceEEEECCCCEEEEEECCCCcEE
Confidence            111000             0011112221  0145777899999999999987643

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=97.87  E-value=0.0017  Score=65.60  Aligned_cols=190  Identities=7%  Similarity=0.039  Sum_probs=114.9

Q ss_pred             CEEEEEeCCCcEEEEeCCCCeEE----EEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCC
Q 004468           63 SLLISGSDDTHINVWSYSSRKLL----HSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAIT  138 (751)
Q Consensus        63 ~~LaSgs~Dg~I~IWd~~~~~~~----~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~  138 (751)
                      .+|..+.. +.|+.+++......    ..+.......+..++|.|.. +.++++-...+.|.++++....          
T Consensus         2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~-~~ly~~d~~~~~I~~~~~~g~~----------   69 (267)
T 1npe_A            2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVD-KVVYWTDISEPSIGRASLHGGE----------   69 (267)
T ss_dssp             EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTT-TEEEEEETTTTEEEEEESSSCC----------
T ss_pred             cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCC-CEEEEEECCCCEEEEEecCCCC----------
Confidence            44555443 47888887654321    11111123467899999973 4566666678899999987421          


Q ss_pred             CceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccce
Q 004468          139 PSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSL  218 (751)
Q Consensus       139 ~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v  218 (751)
                      ....+...-.....+++.++++.++++-...+.|.++++.....            ..+...             .....
T Consensus        70 ~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~------------~~~~~~-------------~~~~P  124 (267)
T 1npe_A           70 PTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR------------RVLFDT-------------GLVNP  124 (267)
T ss_dssp             CEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC------------EEEECS-------------SCSSE
T ss_pred             cEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCE------------EEEEEC-------------CCCCc
Confidence            12222222346789999986677888888888999999864321            111110             11345


Q ss_pred             EEEEEeCCCCcEEEEEeC--CCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEE
Q 004468          219 KSCDISSTRPHLLLVGGS--DAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLL  296 (751)
Q Consensus       219 ~~i~~sp~~~~~l~sgs~--D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~  296 (751)
                      ..++++|+++.++++...  .+.|..+++.... ..             .+...     +  ......++++|++.+|++
T Consensus       125 ~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~-~~-------------~~~~~-----~--~~~P~gia~d~~~~~lyv  183 (267)
T 1npe_A          125 RGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-RR-------------ILAQD-----N--LGLPNGLTFDAFSSQLCW  183 (267)
T ss_dssp             EEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-CE-------------EEECT-----T--CSCEEEEEEETTTTEEEE
T ss_pred             cEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC-cE-------------EEEEC-----C--CCCCcEEEEcCCCCEEEE
Confidence            789999965555555433  4688888875321 10             00000     0  013788999998877665


Q ss_pred             Ee-CCCcEEEEECCC
Q 004468          297 SY-SGEHVYLMDVNH  310 (751)
Q Consensus       297 ~s-~d~~I~lwdl~~  310 (751)
                      +. ..+.|+++|+..
T Consensus       184 ~d~~~~~I~~~~~~g  198 (267)
T 1npe_A          184 VDAGTHRAECLNPAQ  198 (267)
T ss_dssp             EETTTTEEEEEETTE
T ss_pred             EECCCCEEEEEecCC
Confidence            55 578999999976

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=97.84  E-value=0.0052  Score=65.98  Aligned_cols=209  Identities=8%  Similarity=0.024  Sum_probs=131.3

Q ss_pred             CcEEEEEECCCC-CEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCC
Q 004468           51 GCVNAISWNSKG-SLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSG  129 (751)
Q Consensus        51 ~~V~~l~~s~dg-~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~  129 (751)
                      ..+..|+|++.+ .++.+-...+.|..+++........+ .........+++.+.. +.++++-...+.|.+.++...  
T Consensus       116 ~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~-~~~~~~p~glavd~~~-g~lY~~d~~~~~I~~~~~dg~--  191 (386)
T 3v65_B          116 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVV-STGLESPGGLAVDWVH-DKLYWTDSGTSRIEVANLDGA--  191 (386)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEE-CSSCSCCCCEEEETTT-TEEEEEETTTTEEEECBTTSC--
T ss_pred             CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEE-eCCCCCccEEEEEeCC-CeEEEEcCCCCeEEEEeCCCC--
Confidence            457789999754 45556567788999998765543333 3333456778888764 566667677788888887642  


Q ss_pred             CCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCC-CcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecc
Q 004468          130 RGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED-GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSL  208 (751)
Q Consensus       130 ~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~D-g~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  208 (751)
                              .....+...-.....|++.|.++.++++-... +.|..+++.....            ..+..         
T Consensus       192 --------~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~------------~~~~~---------  242 (386)
T 3v65_B          192 --------HRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR------------RIIAD---------  242 (386)
T ss_dssp             --------SCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC------------EEEEC---------
T ss_pred             --------ceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCc------------EEEEE---------
Confidence                    11222233345678999999777888887666 7888888765321            11111         


Q ss_pred             cCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEc
Q 004468          209 ADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFS  288 (751)
Q Consensus       209 ~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fs  288 (751)
                          ......+.|+|+|.+++++++-...+.|..+|+......              .+....       ......+++ 
T Consensus       243 ----~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~--------------~~~~~~-------~~~P~giav-  296 (386)
T 3v65_B          243 ----THLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRK--------------AVISQG-------LPHPFAITV-  296 (386)
T ss_dssp             ----SSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCE--------------EEECSS-------CSSEEEEEE-
T ss_pred             ----CCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeE--------------EEEECC-------CCCceEEEE-
Confidence                012346789999866666666667788999987632110              110000       113567888 


Q ss_pred             CCCCEEEEEeCCCcEEEEECCCCCcceeee
Q 004468          289 PNGEEVLLSYSGEHVYLMDVNHAGGRAMRY  318 (751)
Q Consensus       289 pdg~~Ll~~s~d~~I~lwdl~~~~~~~~~~  318 (751)
                      ..+..+++....+.|..+|..++.......
T Consensus       297 ~~~~ly~td~~~~~V~~~~~~~G~~~~~i~  326 (386)
T 3v65_B          297 FEDSLYWTDWHTKSINSANKFTGKNQEIIR  326 (386)
T ss_dssp             ETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred             ECCEEEEeeCCCCeEEEEECCCCcceEEEc
Confidence            445556666778899999966655444433

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=97.83  E-value=0.00041  Score=73.90  Aligned_cols=242  Identities=9%  Similarity=-0.080  Sum_probs=131.3

Q ss_pred             EEEEEeCCC----cEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEE----------CCCcEEEEECCCCCC
Q 004468           64 LLISGSDDT----HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGA----------GDAEVRLFNLSRFSG  129 (751)
Q Consensus        64 ~LaSgs~Dg----~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs----------~Dg~V~vwd~~~~~~  129 (751)
                      .+++-..++    +|.++|..+++.+.++..+.. +  .+.|+|+  +++++.+.          .+++|.+||+.+.  
T Consensus        34 ~yV~~~~~~~~~d~vsvID~~t~~v~~~i~vG~~-P--~i~~spD--g~~lyVan~~~~r~~~G~~~~~VsviD~~T~--  106 (368)
T 1mda_H           34 SHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFL-S--LAVAGHS--GSDFALASTSFARSAKGKRTDYVEVFDPVTF--  106 (368)
T ss_dssp             EEEEECTTTCSSEEEEEEETTTTEEEEEEEECTT-C--EEEECTT--SSCEEEEEEEETTTTSSSEEEEEEEECTTTC--
T ss_pred             EEEECCccCCccceEEEEECCCCeEEEEEeCCCC-C--ceEECCC--CCEEEEEcccccccccCCCCCEEEEEECCCC--
Confidence            444555455    888999999999999966654 4  7999999  67776665          4789999999975  


Q ss_pred             CCCCCCCCCCceeeccc-------CCceeEEEEecCCCCEEEEEeC--CCcEEE--EecCCCCCCCC-----C-------
Q 004468          130 RGLDDNAITPSALYQCH-------TRRVKKLAVEVGNPHVVWSASE--DGTLRQ--HDFRQGSSCPP-----A-------  186 (751)
Q Consensus       130 ~~~~~~~~~~~~~~~~h-------~~~V~~l~~sp~~~~~l~s~s~--Dg~I~i--wDlr~~~~~~~-----~-------  186 (751)
                              +.+..+.-+       ......++++|++ ++++.+..  +..|.+  +|+.+-..+..     .       
T Consensus       107 --------~vv~~I~v~~~~~~~~g~~P~~ia~SpDG-k~lyVan~~~~~~v~V~~iD~~tv~~i~v~~~~~~~p~g~~~  177 (368)
T 1mda_H          107 --------LPIADIELPDAPRFSVGPRVHIIGNCASS-ACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAAT  177 (368)
T ss_dssp             --------CEEEEEEETTSCSCCBSCCTTSEEECTTS-SCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEEEETTE
T ss_pred             --------CEEEEEECCCccccccCCCcceEEEcCCC-CEEEEEccCCCCeEEEEEEchhhceEEECCCceEEccCCCeE
Confidence                    445555432       1345689999955 44445443  467888  99865111000     0       


Q ss_pred             -CCCCCccceEEEeccc-----Cceecc--cCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCC--ccccCC
Q 004468          187 -GSSHQECRNILLDLRC-----GAKRSL--ADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPP--LTSCQK  256 (751)
Q Consensus       187 -~~~~~~~~~~l~~~~~-----~~~~~~--~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~--~~~~~~  256 (751)
                       .....+.....+++..     +.....  ...+-...+.   . .++++.++++ +. +.|.+.|......  +..+..
T Consensus       178 ~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~v-s~-~~V~viD~~~~~~~v~~~~~~  251 (368)
T 1mda_H          178 HYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWA-VA-SSILQGDIPAAGATMKAAIDG  251 (368)
T ss_dssp             EECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEEC-BS-SCCEEEECCSSCCEEECCCCS
T ss_pred             EEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEE-cC-CEEEEEECCCCcceEEEEEEe
Confidence             0000111122233332     111000  0000011122   2 5544444444 44 8899999864321  100000


Q ss_pred             CCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeC---------CCcEEEEECCCCCcceeeeecCCCceeE
Q 004468          257 RMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS---------GEHVYLMDVNHAGGRAMRYTVGDASKIM  327 (751)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~---------d~~I~lwdl~~~~~~~~~~~~~~~~~~~  327 (751)
                      .           .......+........++|+|||++|+++..         ++.+.++|+.+.+... .+..+..+..+
T Consensus       252 ~-----------~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~-~i~vg~~p~gi  319 (368)
T 1mda_H          252 N-----------ESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSG-PISNGHDSDAI  319 (368)
T ss_dssp             S-----------CTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEE-CCEEEEEECEE
T ss_pred             c-----------cccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEE-EEECCCCcceE
Confidence            0           0000000000001122689999999887643         2466799999965333 33334467888


Q ss_pred             EeCCCCCCcccC
Q 004468          328 SFTPTLNGLELQ  339 (751)
Q Consensus       328 ~~sp~~~~~~~~  339 (751)
                      +|+|+.+.+.+.
T Consensus       320 ~~s~Dg~~l~va  331 (368)
T 1mda_H          320 IAAQDGASDNYA  331 (368)
T ss_dssp             EECCSSSCEEEE
T ss_pred             EECCCCCEEEEE
Confidence            999987755444

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=97.81  E-value=0.00033  Score=81.32  Aligned_cols=72  Identities=4%  Similarity=0.099  Sum_probs=53.5

Q ss_pred             EEEEECCCCCEEEEEeCCC-------------------cEEEEeCCCCeEEEEecccCC--------cceEEEEEecCCC
Q 004468           54 NAISWNSKGSLLISGSDDT-------------------HINVWSYSSRKLLHSIETGHS--------ANVFCTKFVPETS  106 (751)
Q Consensus        54 ~~l~~s~dg~~LaSgs~Dg-------------------~I~IWd~~~~~~~~~l~~~h~--------~~V~~v~fsp~s~  106 (751)
                      ..+++++++.+|..++.++                   .|..+|..+|+.+..+...+.        .....+....+  
T Consensus       246 ~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~d--  323 (677)
T 1kb0_A          246 DSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIA--  323 (677)
T ss_dssp             SCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEET--
T ss_pred             cceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccC--
Confidence            3578889888888887664                   499999999999888744332        22333344445  


Q ss_pred             C---cEEEEEECCCcEEEEECCCC
Q 004468          107 D---ELVVSGAGDAEVRLFNLSRF  127 (751)
Q Consensus       107 ~---~~l~sgs~Dg~V~vwd~~~~  127 (751)
                      |   ..|+.++.+|.|+++|..++
T Consensus       324 G~~~~~l~~~~~~G~l~~lD~~tG  347 (677)
T 1kb0_A          324 GKPRKVILHAPKNGFFFVLDRTNG  347 (677)
T ss_dssp             TEEEEEEEECCTTSEEEEEETTTC
T ss_pred             CcEeeEEEEECCCCEEEEEECCCC
Confidence            6   68899999999999999875

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=97.76  E-value=0.00013  Score=67.68  Aligned_cols=125  Identities=14%  Similarity=0.039  Sum_probs=97.8

Q ss_pred             cchhHHHHHHHHHhhhcCCChhHHHHHhHHHHhcccC-----CCC-------CchhhhhHhHHHHHhhcccccchhhhHH
Q 004468          360 LGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLS-----GIG-------PMLRHECLCIRAALLLKRKWKNDAQMAI  427 (751)
Q Consensus       360 ~~~~~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~-----~~~-------~~~~~~~~~~ra~~~~~r~w~~d~y~al  427 (751)
                      ......+...++..+..|. |..|+..|..+|...+.     .+.       .+....+|.++|.++++.+   +...|+
T Consensus         8 ~~~a~~~~~~G~~~~~~~~-~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~---~~~~A~   83 (162)
T 3rkv_A            8 LKSVEALRQKGNELFVQKD-YKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIG---DLHEAE   83 (162)
T ss_dssp             CHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHT---CHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcC---cHHHHH
Confidence            3456778888899998888 99999999999886221     000       1222458889999998765   456799


Q ss_pred             HhhHHHhcCCCCCcchHHHHHHHHHHhcchHHHHHHHHHhcccCCCCh-hhhHHHHHHHHHH
Q 004468          428 RDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNS-VMAEKVENIKKHI  488 (751)
Q Consensus       428 ~d~~~a~~~~~~~~~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~-~~~~~~~~~~~~~  488 (751)
                      .+|..++.++|.+.+++++++.++..+|++.+|..++.......|... .....+..+...+
T Consensus        84 ~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~  145 (162)
T 3rkv_A           84 ETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERR  145 (162)
T ss_dssp             HHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999766 4444444444444

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=97.74  E-value=0.00054  Score=79.49  Aligned_cols=100  Identities=12%  Similarity=0.053  Sum_probs=65.2

Q ss_pred             CCcEEEEeCCCCeEEEEecccCCc-------------------------------ceEEEEEecCCCCcEEEEEECCC--
Q 004468           71 DTHINVWSYSSRKLLHSIETGHSA-------------------------------NVFCTKFVPETSDELVVSGAGDA--  117 (751)
Q Consensus        71 Dg~I~IWd~~~~~~~~~l~~~h~~-------------------------------~V~~v~fsp~s~~~~l~sgs~Dg--  117 (751)
                      ++.|..||..+|+.+..+......                               ....+++.|+  +.+|+.+..++  
T Consensus       189 ~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~--~~~vy~~~~~~~~  266 (677)
T 1kb0_A          189 RGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAE--LNTMYVGTGNGSP  266 (677)
T ss_dssp             BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETT--TTEEEEECCCEES
T ss_pred             CCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCC--CCEEEEECCCCcc
Confidence            799999999999998877332111                               1135678888  56777776654  


Q ss_pred             -----------------cEEEEECCCCCCCCCCCCCCCCceeecc--cC-------CceeEEEEecCCC---CEEEEEeC
Q 004468          118 -----------------EVRLFNLSRFSGRGLDDNAITPSALYQC--HT-------RRVKKLAVEVGNP---HVVWSASE  168 (751)
Q Consensus       118 -----------------~V~vwd~~~~~~~~~~~~~~~~~~~~~~--h~-------~~V~~l~~sp~~~---~~l~s~s~  168 (751)
                                       +|..+|..++.          .+-.++.  |.       ....-+.... ++   ..++.++.
T Consensus       267 w~~~~~~~~~gd~~~~~sv~AlD~~TG~----------~~W~~~~~~~d~wd~~~~~~p~l~~~~~-dG~~~~~l~~~~~  335 (677)
T 1kb0_A          267 WSHKVRSPKGGDNLYLASIVALDPDTGK----------YKWHYQETPGDNWDYTSTQPMILADIKI-AGKPRKVILHAPK  335 (677)
T ss_dssp             SCHHHHSTTCCCCTTTTEEEEECTTTCC----------EEEEEESSTTCCSCCCCCSCCEEEEEEE-TTEEEEEEEECCT
T ss_pred             ccCCCCCccCCCCeeeEEEEEEECCCCC----------EEEEEecCCCcccccccCCCcEEEeccc-CCcEeeEEEEECC
Confidence                             48888888652          2333221  21       1122223333 44   67889999


Q ss_pred             CCcEEEEecCCCCCC
Q 004468          169 DGTLRQHDFRQGSSC  183 (751)
Q Consensus       169 Dg~I~iwDlr~~~~~  183 (751)
                      +|.|+++|.++++.+
T Consensus       336 ~G~l~~lD~~tG~~l  350 (677)
T 1kb0_A          336 NGFFFVLDRTNGKFI  350 (677)
T ss_dssp             TSEEEEEETTTCCEE
T ss_pred             CCEEEEEECCCCCEe
Confidence            999999999998753

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=97.74  E-value=3.3e-05  Score=71.24  Aligned_cols=123  Identities=13%  Similarity=0.004  Sum_probs=97.0

Q ss_pred             hhHHHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCC-Cc-----hhhhhHhHHHHHhhcccccchhhhHHHhhHHHhc
Q 004468          362 KCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIG-PM-----LRHECLCIRAALLLKRKWKNDAQMAIRDCYNARR  435 (751)
Q Consensus       362 ~~~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~-~~-----~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~  435 (751)
                      +...+...++..+..|. |..|+..|..+|...+..+. ..     ....+|.||+.++.+.+-   .-.|+.++.+|+.
T Consensus        10 ~a~~~~~~G~~l~~~g~-~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr---~~eAl~~~~kAL~   85 (159)
T 2hr2_A           10 GAYLALSDAQRQLVAGE-YDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRS---FDEALHSADKALH   85 (159)
T ss_dssp             HHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCC---HHHHHHHHHHHHH
Confidence            45567778888888888 99999999999998776321 01     122389999999998764   4568999999999


Q ss_pred             C-------CCCCcchH----HHHHHHHHHhcchHHHHHHHHHhcccCCCChhhhHHHHHHHHHH
Q 004468          436 I-------DSSSFRAH----LYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHI  488 (751)
Q Consensus       436 ~-------~~~~~~a~----~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~  488 (751)
                      +       +|.+.++|    +++..+|..++++.+|+.+++......|+.......+...++.+
T Consensus        86 l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~~  149 (159)
T 2hr2_A           86 YFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVA  149 (159)
T ss_dssp             HHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHH
T ss_pred             hhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence            9       99999999    99999999999999999999998888887665444444444444

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=97.73  E-value=0.013  Score=60.88  Aligned_cols=211  Identities=7%  Similarity=-0.021  Sum_probs=127.5

Q ss_pred             CCcEEEEEECCCC-CEEEEEeCCCcEEEEeCCC---CeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECC
Q 004468           50 QGCVNAISWNSKG-SLLISGSDDTHINVWSYSS---RKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLS  125 (751)
Q Consensus        50 ~~~V~~l~~s~dg-~~LaSgs~Dg~I~IWd~~~---~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~  125 (751)
                      -..+..++|++.+ .++.+-...+.|..+++..   +.....+....-.....+++.+.. +.++++-...+.|.+.++.
T Consensus        29 ~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~-~~ly~~d~~~~~I~~~~~~  107 (316)
T 1ijq_A           29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH-SNIYWTDSVLGTVSVADTK  107 (316)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTT-TEEEEEETTTTEEEEEETT
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecC-CeEEEEECCCCEEEEEeCC
Confidence            3467899999865 4555666678999999875   122222212223456789998763 5666676778899999987


Q ss_pred             CCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCC-CcEEEEecCCCCCCCCCCCCCCccceEEEecccCc
Q 004468          126 RFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED-GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGA  204 (751)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~D-g~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~  204 (751)
                      ..          .....+...-.....+++.|.++.++++.... +.|..+++....            ..++..     
T Consensus       108 g~----------~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~------------~~~~~~-----  160 (316)
T 1ijq_A          108 GV----------KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD------------IYSLVT-----  160 (316)
T ss_dssp             SS----------SEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC------------EEEEEC-----
T ss_pred             CC----------ceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCC------------eEEEEE-----
Confidence            42          11112222335678999999777788776554 788888775422            111111     


Q ss_pred             eecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEE
Q 004468          205 KRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTH  284 (751)
Q Consensus       205 ~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~  284 (751)
                              ......+.++++|++++++++-...+.|..+|+.... ...             +...     .........
T Consensus       161 --------~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~-~~~-------------~~~~-----~~~~~~P~g  213 (316)
T 1ijq_A          161 --------ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN-RKT-------------ILED-----EKRLAHPFS  213 (316)
T ss_dssp             --------SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEE-------------EEEC-----TTTTSSEEE
T ss_pred             --------CCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCc-eEE-------------Eeec-----CCccCCcEE
Confidence                    0123577899999766666666677899999986321 111             1000     000113567


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEECCCCCccee
Q 004468          285 VTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAM  316 (751)
Q Consensus       285 v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~  316 (751)
                      +++. .+..+++....+.|..+|..+++....
T Consensus       214 iav~-~~~ly~~d~~~~~V~~~~~~~g~~~~~  244 (316)
T 1ijq_A          214 LAVF-EDKVFWTDIINEAIFSANRLTGSDVNL  244 (316)
T ss_dssp             EEEE-TTEEEEEETTTTEEEEEETTTCCCCEE
T ss_pred             EEEE-CCEEEEEECCCCeEEEEeCCCCcceEE
Confidence            7775 455556666788999999877654333

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=97.71  E-value=0.016  Score=61.17  Aligned_cols=200  Identities=9%  Similarity=0.033  Sum_probs=124.9

Q ss_pred             CcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCC
Q 004468           51 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGR  130 (751)
Q Consensus        51 ~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~  130 (751)
                      +...|.+..+++.+|++  ....|+..++........+ . ....+..++|.+.. +.++++-...+.|..+++....  
T Consensus        34 d~~~C~~~~~~~~ll~~--~~~~I~~i~~~g~~~~~~~-~-~~~~~~~l~~d~~~-~~ly~~D~~~~~I~r~~~~g~~--  106 (349)
T 3v64_C           34 DRRSCKALGPEPVLLFA--NRIDIRQVLPHRSEYTLLL-N-NLENAIALDFHHRR-ELVFWSDVTLDRILRANLNGSN--  106 (349)
T ss_dssp             TSSCEEESSSCCEEEEE--CBSCEEEECTTSCCEEEEE-C-SCSCEEEEEEETTT-TEEEEEETTTTEEEEEETTSCS--
T ss_pred             CCCcccccccCceeEee--cccceEEEeCCCCeeEEee-c-CCCceEEEEEeccc-cEEEEEeccCCceEEEecCCCC--
Confidence            34456666664444433  3345888888755443333 3 33458899999874 5566666677889999987531  


Q ss_pred             CCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccC
Q 004468          131 GLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLAD  210 (751)
Q Consensus       131 ~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  210 (751)
                              ..............+++.+.++.++++-...+.|.+.++.....            .++..           
T Consensus       107 --------~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~------------~~l~~-----------  155 (349)
T 3v64_C          107 --------VEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR------------KVLLW-----------  155 (349)
T ss_dssp             --------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC------------EEEEC-----------
T ss_pred             --------ceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCce------------EEEEe-----------
Confidence                    12222222345678999886778888888889999999865421            11111           


Q ss_pred             CCCCccceEEEEEeCCCCcEEEEEeCC-CeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcC
Q 004468          211 PPKQTLSLKSCDISSTRPHLLLVGGSD-AFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP  289 (751)
Q Consensus       211 ~~~~~~~v~~i~~sp~~~~~l~sgs~D-~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fsp  289 (751)
                        ........+++.|.++.++++-... +.|..+++...... .             +..     .  .....+.++|+|
T Consensus       156 --~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~-~-------------~~~-----~--~~~~PnGla~d~  212 (349)
T 3v64_C          156 --QSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRR-I-------------IAD-----T--HLFWPNGLTIDY  212 (349)
T ss_dssp             --TTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE-E-------------SCC-----S--SCSCEEEEEEET
T ss_pred             --CCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcE-E-------------EEE-----C--CCCCcceEEEeC
Confidence              0123467899999766666666565 78888887632110 0             000     0  011378999999


Q ss_pred             CCCEEEEEe-CCCcEEEEECCCC
Q 004468          290 NGEEVLLSY-SGEHVYLMDVNHA  311 (751)
Q Consensus       290 dg~~Ll~~s-~d~~I~lwdl~~~  311 (751)
                      ++..|+.+- ..+.|+.+|++..
T Consensus       213 ~~~~lY~aD~~~~~I~~~~~dG~  235 (349)
T 3v64_C          213 AGRRMYWVDAKHHVIERANLDGS  235 (349)
T ss_dssp             TTTEEEEEETTTTEEEEEETTSC
T ss_pred             CCCEEEEEECCCCEEEEEeCCCC
Confidence            777666554 5788999998763

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=97.69  E-value=0.00051  Score=79.86  Aligned_cols=100  Identities=15%  Similarity=0.118  Sum_probs=65.9

Q ss_pred             CCcEEEEeCCCCeEEEEecccC------------------------------CcceEEEEEecCCCCcEEEEEECCCc--
Q 004468           71 DTHINVWSYSSRKLLHSIETGH------------------------------SANVFCTKFVPETSDELVVSGAGDAE--  118 (751)
Q Consensus        71 Dg~I~IWd~~~~~~~~~l~~~h------------------------------~~~V~~v~fsp~s~~~~l~sgs~Dg~--  118 (751)
                      ++.|..||..+|+.+..+....                              ......+++.|+  +.+|+.+..++.  
T Consensus       182 ~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~--~~~vy~~~~~g~~w  259 (689)
T 1yiq_A          182 RGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPE--LNLLYIGVGNGSLW  259 (689)
T ss_dssp             BCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETT--TTEEEEECCCEESS
T ss_pred             CCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCC--CCEEEEeCCCCCcc
Confidence            7899999999999988763211                              111125788888  578888877763  


Q ss_pred             -----------------EEEEECCCCCCCCCCCCCCCCceeecc--cC-------CceeEEEEecCCCC---EEEEEeCC
Q 004468          119 -----------------VRLFNLSRFSGRGLDDNAITPSALYQC--HT-------RRVKKLAVEVGNPH---VVWSASED  169 (751)
Q Consensus       119 -----------------V~vwd~~~~~~~~~~~~~~~~~~~~~~--h~-------~~V~~l~~sp~~~~---~l~s~s~D  169 (751)
                                       |..+|..++.          .+-.++.  |.       ..+....... ++.   .++.++.+
T Consensus       260 ~~~~~~~~~gd~~y~~~v~AlD~~TG~----------~~W~~~~~~~d~wd~~~~~~~~l~d~~~-~G~~~~~v~~~~~~  328 (689)
T 1yiq_A          260 DPKWRSQAKGDNLFLSSIVAVNADTGE----------YVWHYQTTPGDAWDYTATQHMILAELPI-DGKPRKVLMQAPKN  328 (689)
T ss_dssp             CHHHHHTTCSCCTTTTEEEEEETTTCC----------EEEEEESSTTCCSCCCCCSCEEEEEEEE-TTEEEEEEEECCTT
T ss_pred             ccCCCCCCCCCceeeeeEEEEEccCCc----------eeEeeecCCcccccccCCCCcEEEeecc-CCcEEEEEEEECCC
Confidence                             9999998752          2333332  21       1111122222 333   78889999


Q ss_pred             CcEEEEecCCCCCC
Q 004468          170 GTLRQHDFRQGSSC  183 (751)
Q Consensus       170 g~I~iwDlr~~~~~  183 (751)
                      |.++++|.++++.+
T Consensus       329 G~l~~lD~~tG~~l  342 (689)
T 1yiq_A          329 GFFYVIDRATGELL  342 (689)
T ss_dssp             SEEEEEETTTCCEE
T ss_pred             CeEEEEECCCCCEe
Confidence            99999999998754

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=97.66  E-value=0.0014  Score=76.30  Aligned_cols=171  Identities=11%  Similarity=0.099  Sum_probs=92.3

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCeEEEEeccc-CCcceEEEEEec---CCCCcEEEEEE-----CCCcEEEEECCCCCCCCC
Q 004468           62 GSLLISGSDDTHINVWSYSSRKLLHSIETG-HSANVFCTKFVP---ETSDELVVSGA-----GDAEVRLFNLSRFSGRGL  132 (751)
Q Consensus        62 g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~-h~~~V~~v~fsp---~s~~~~l~sgs-----~Dg~V~vwd~~~~~~~~~  132 (751)
                      +..|+.++.|+.|..+|..+|+.+..+... +......+..+|   +  +..++..+     .++.|+.||..++...-.
T Consensus       121 ~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~--g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~  198 (689)
T 1yiq_A          121 KGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVN--GKVVIGNGGAEFGVRGYVTAYDAETGKEAWR  198 (689)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEET--TEEEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred             CCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEEC--CEEEEEeCCCccCCCCEEEEEECCCCcEEEE
Confidence            567888999999999999999998877443 222111222222   3  44444332     378999999987532100


Q ss_pred             -CCCCCCCce------------ee--------cccCCceeEEEEecCCCCEEEEEeCCCc-------------------E
Q 004468          133 -DDNAITPSA------------LY--------QCHTRRVKKLAVEVGNPHVVWSASEDGT-------------------L  172 (751)
Q Consensus       133 -~~~~~~~~~------------~~--------~~h~~~V~~l~~sp~~~~~l~s~s~Dg~-------------------I  172 (751)
                       ......+..            ..        .++......+++.|. ..+++.++.++.                   |
T Consensus       199 ~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~-~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v  277 (689)
T 1yiq_A          199 FYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPE-LNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSI  277 (689)
T ss_dssp             EESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETT-TTEEEEECCCEESSCHHHHHTTCSCCTTTTEE
T ss_pred             ecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCC-CCEEEEeCCCCCccccCCCCCCCCCceeeeeE
Confidence             000000000            00        011111235788884 467777877764                   8


Q ss_pred             EEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCc---EEEEEeCCCeEEEEeCCCCC
Q 004468          173 RQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPH---LLLVGGSDAFARLYDRRMLP  249 (751)
Q Consensus       173 ~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~---~l~sgs~D~~IriwD~~~~~  249 (751)
                      ..+|.++++.              +|....... ..+... ....+....+.. ++.   .++.++.+|.++++|.++++
T Consensus       278 ~AlD~~TG~~--------------~W~~~~~~~-d~wd~~-~~~~~~l~d~~~-~G~~~~~v~~~~~~G~l~~lD~~tG~  340 (689)
T 1yiq_A          278 VAVNADTGEY--------------VWHYQTTPG-DAWDYT-ATQHMILAELPI-DGKPRKVLMQAPKNGFFYVIDRATGE  340 (689)
T ss_dssp             EEEETTTCCE--------------EEEEESSTT-CCSCCC-CCSCEEEEEEEE-TTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred             EEEEccCCce--------------eEeeecCCc-cccccc-CCCCcEEEeecc-CCcEEEEEEEECCCCeEEEEECCCCC
Confidence            8888887752              232221100 000000 011111112222 233   78899999999999999998


Q ss_pred             Ccc
Q 004468          250 PLT  252 (751)
Q Consensus       250 ~~~  252 (751)
                      .+.
T Consensus       341 ~l~  343 (689)
T 1yiq_A          341 LLS  343 (689)
T ss_dssp             EEE
T ss_pred             Eec
Confidence            763

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=97.55  E-value=0.013  Score=62.68  Aligned_cols=197  Identities=8%  Similarity=0.036  Sum_probs=121.0

Q ss_pred             EEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCC
Q 004468           54 NAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLD  133 (751)
Q Consensus        54 ~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~  133 (751)
                      +|.+..+.+ +|+.+ ....|+..++........+ . ....+..++|.+.. +.++++-...+.|..+++....     
T Consensus        80 ~C~~~~~~~-~l~~~-~~~~I~~i~~~~~~~~~~~-~-~~~~~~gl~~d~~~-~~ly~~D~~~~~I~r~~~~g~~-----  149 (386)
T 3v65_B           80 SCKALGPEP-VLLFA-NRIDIRQVLPHRSEYTLLL-N-NLENAIALDFHHRR-ELVFWSDVTLDRILRANLNGSN-----  149 (386)
T ss_dssp             CEEECSSCC-EEEEE-CBSCEEEECTTSCCCEEEE-C-SCSCEEEEEEETTT-TEEEEEETTTTEEEEEETTSCC-----
T ss_pred             eECCccccc-eeEee-cCccceeeccCCCcEEEEe-c-CCCccEEEEEecCC-CeEEEEeCCCCcEEEEecCCCC-----
Confidence            354555533 33333 3356888888765443333 2 33558899999874 5566666677889999987531     


Q ss_pred             CCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCC
Q 004468          134 DNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPK  213 (751)
Q Consensus       134 ~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  213 (751)
                           ....+.........+++.+.++.++++-...+.|.+.++.....            ..+..             .
T Consensus       150 -----~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~------------~~l~~-------------~  199 (386)
T 3v65_B          150 -----VEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR------------KVLLW-------------Q  199 (386)
T ss_dssp             -----EEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSC------------EEEEC-------------S
T ss_pred             -----cEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCce------------EEeec-------------C
Confidence                 11222222345577899886778888888888999888764321            11211             0


Q ss_pred             CccceEEEEEeCCCCcEEEEEeCC-CeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCC
Q 004468          214 QTLSLKSCDISSTRPHLLLVGGSD-AFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGE  292 (751)
Q Consensus       214 ~~~~v~~i~~sp~~~~~l~sgs~D-~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~  292 (751)
                      .......+++.|.++.++++-... +.|..+++......              .+...     +  ....+.|+|+|++.
T Consensus       200 ~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~--------------~~~~~-----~--~~~PnGlavd~~~~  258 (386)
T 3v65_B          200 SLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRR--------------IIADT-----H--LFWPNGLTIDYAGR  258 (386)
T ss_dssp             SCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE--------------EEECS-----S--CSCEEEEEEEGGGT
T ss_pred             CCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcE--------------EEEEC-----C--CCCeeeEEEeCCCC
Confidence            123467899999766666665555 78888887532111              00000     0  11368999998777


Q ss_pred             EEEEE-eCCCcEEEEECCCC
Q 004468          293 EVLLS-YSGEHVYLMDVNHA  311 (751)
Q Consensus       293 ~Ll~~-s~d~~I~lwdl~~~  311 (751)
                      .|+.+ +..+.|+.+|+...
T Consensus       259 ~lY~aD~~~~~I~~~d~dG~  278 (386)
T 3v65_B          259 RMYWVDAKHHVIERANLDGS  278 (386)
T ss_dssp             EEEEEETTTTEEEEECTTSC
T ss_pred             EEEEEECCCCEEEEEeCCCC
Confidence            66655 45788999998763

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=97.52  E-value=0.00021  Score=79.67  Aligned_cols=224  Identities=12%  Similarity=0.113  Sum_probs=124.5

Q ss_pred             CCCEEEEEeC-CCcEEEEeCCCCeEEEEecccCCcceEEEEE-e-cCCCCcEEEEEE------------------CCCcE
Q 004468           61 KGSLLISGSD-DTHINVWSYSSRKLLHSIETGHSANVFCTKF-V-PETSDELVVSGA------------------GDAEV  119 (751)
Q Consensus        61 dg~~LaSgs~-Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~f-s-p~s~~~~l~sgs------------------~Dg~V  119 (751)
                      ||++|..... +..|.+.|+.+.++...+.......+..+++ . |+  +.+++.++                  .++.|
T Consensus       100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~--~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~v  177 (595)
T 1fwx_A          100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPR--SNYVFCNGEDETPLVNDGTNMEDVANYVNVF  177 (595)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSB--CSEEEEEECSCEESSCSSSSTTCGGGEEEEE
T ss_pred             CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCC--CcEEEEecccccccCCCCcccccccccCceE
Confidence            7887766654 5569999999999887543234456888888 4 88  67777764                  34578


Q ss_pred             EEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCC---------------CcEEEEecCCCCCCC
Q 004468          120 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED---------------GTLRQHDFRQGSSCP  184 (751)
Q Consensus       120 ~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~D---------------g~I~iwDlr~~~~~~  184 (751)
                      .+.|..+.          +.+..+.-- +....++++|+ +.++++++.+               ..|.++|........
T Consensus       178 tvID~~t~----------~v~~qI~Vg-g~pd~~~~spd-Gk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v  245 (595)
T 1fwx_A          178 TAVDADKW----------EVAWQVLVS-GNLDNCDADYE-GKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAI  245 (595)
T ss_dssp             EEEETTTT----------EEEEEEEES-SCCCCEEECSS-SSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHH
T ss_pred             EEEECCCC----------eEEEEEEeC-CCccceEECCC-CCEEEEEecCcccCcchhhccccccceEEEeeccceeEec
Confidence            88888853          223333311 13456889995 5555565544               236666654322110


Q ss_pred             CCCCCCCccceEEEeccc--CceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCC
Q 004468          185 PAGSSHQECRNILLDLRC--GAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPP  262 (751)
Q Consensus       185 ~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~  262 (751)
                      ..+....-....+++...  +... +...+ -.....++.++|++...++++..+.+|.+||+.+.+...  .....+..
T Consensus       246 ~~Gk~~~i~~V~VID~~~~~~~~~-~~~Ip-vg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~--~~~l~~~~  321 (595)
T 1fwx_A          246 AAGDYQELNGVKVVDGRKEASSLF-TRYIP-IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVF--YENADPRS  321 (595)
T ss_dssp             HHTCSEEETTEEEEECSGGGCCSS-EEEEE-EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHH--HSCCCGGG
T ss_pred             cCCCeeEECcEEEEeCcccCCcee-EEEEe-cCCCceEEEEcCCCCEEEEeCCCCCeEEEEECccccccc--ccccCccc
Confidence            000000001134455544  2110 00000 112456789999644455556678999999998642110  00000000


Q ss_pred             ccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004468          263 CVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (751)
Q Consensus       263 ~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~  310 (751)
                      ++...    .    ..+.....++|+|+|...++...|++|.+||+..
T Consensus       322 ~v~~~----v----~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~  361 (595)
T 1fwx_A          322 AVVAE----P----ELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIED  361 (595)
T ss_dssp             GEEEC----C----BCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred             ceEEE----c----CCCCCcceEEECCCCeEEEEEecCCcEEEEEhhH
Confidence            00000    0    1122478899999994334455699999999887

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=97.51  E-value=0.056  Score=58.11  Aligned_cols=213  Identities=7%  Similarity=-0.012  Sum_probs=128.1

Q ss_pred             CCCcEEEEEECCCCC-EEEEEeCCCcEEEEeCCCCe---EEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEEC
Q 004468           49 HQGCVNAISWNSKGS-LLISGSDDTHINVWSYSSRK---LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNL  124 (751)
Q Consensus        49 H~~~V~~l~~s~dg~-~LaSgs~Dg~I~IWd~~~~~---~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~  124 (751)
                      .-..+..|+|++.+. ++.+-...+.|..+++....   ....+..........+++.+.. +.++++-...+.|.+.++
T Consensus       110 ~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~-~~lY~~d~~~~~I~~~~~  188 (400)
T 3p5b_L          110 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH-SNIYWTDSVLGTVSVADT  188 (400)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTT-TEEEEEETTTTEEEEECT
T ss_pred             ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecC-CceEEEECCCCeEEEEeC
Confidence            345788999998554 55555567888888886421   1222213344567889998853 566667677889999988


Q ss_pred             CCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeC-CCcEEEEecCCCCCCCCCCCCCCccceEEEecccC
Q 004468          125 SRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASE-DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCG  203 (751)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~-Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~  203 (751)
                      ...          .....+...-.....|++.|.++.++++-.. .+.|...++.....            ..+..    
T Consensus       189 ~g~----------~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~------------~~~~~----  242 (400)
T 3p5b_L          189 KGV----------KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI------------YSLVT----  242 (400)
T ss_dssp             TTC----------SEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSC------------EEEEC----
T ss_pred             CCC----------ceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCcc------------EEEEE----
Confidence            742          1122222234457899999977778877644 47888888765321            11111    


Q ss_pred             ceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceE
Q 004468          204 AKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLT  283 (751)
Q Consensus       204 ~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt  283 (751)
                               ......+.|+++|.+++++++=...+.|..+|+..... ..             +...    .+. .....
T Consensus       243 ---------~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~-~~-------------~~~~----~~~-l~~P~  294 (400)
T 3p5b_L          243 ---------ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-KT-------------ILED----EKR-LAHPF  294 (400)
T ss_dssp             ---------SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCC-EE-------------EEEC----SST-TSSEE
T ss_pred             ---------CCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCcc-EE-------------EEeC----CCC-CCCCE
Confidence                     01245788999987666666656678999999864221 11             1000    000 01245


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECCCCCcceee
Q 004468          284 HVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMR  317 (751)
Q Consensus       284 ~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~~  317 (751)
                      .+++. .+..+++....+.|..+|..++......
T Consensus       295 gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~~~i  327 (400)
T 3p5b_L          295 SLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLL  327 (400)
T ss_dssp             EEEEE-TTEEEEEESSSCSEEEEESSSCCCCEEE
T ss_pred             EEEEe-CCEEEEecCCCCeEEEEEcCCCCceEEE
Confidence            67773 3445556667889999997776544443

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=97.50  E-value=0.0036  Score=63.11  Aligned_cols=196  Identities=11%  Similarity=0.049  Sum_probs=113.4

Q ss_pred             CeEEEEecccCCcceEEEEEecCCCCcEEEEEEC--CCcEEEEECCCCCCCCCCCCCCCCceeecc-cCCceeEEEEecC
Q 004468           82 RKLLHSIETGHSANVFCTKFVPETSDELVVSGAG--DAEVRLFNLSRFSGRGLDDNAITPSALYQC-HTRRVKKLAVEVG  158 (751)
Q Consensus        82 ~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~--Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~-h~~~V~~l~~sp~  158 (751)
                      .+.+.++..+.......+.|+|+  +.++++.+.  ++.|++.|+.++          +.+..+.- .....-.+++.  
T Consensus         9 ~~vv~~~p~~~~~f~~Gl~~~~d--g~Lyvstg~~~~s~v~~iD~~tg----------~v~~~i~l~~~~fgeGi~~~--   74 (266)
T 2iwa_A            9 VEVLNEFPHDPYAFTQGLVYAEN--DTLFESTGLYGRSSVRQVALQTG----------KVENIHKMDDSYFGEGLTLL--   74 (266)
T ss_dssp             EEEEEEEECCTTCCEEEEEECST--TEEEEEECSTTTCEEEEEETTTC----------CEEEEEECCTTCCEEEEEEE--
T ss_pred             ceEEEEEECCCCCCcccEEEeCC--CeEEEECCCCCCCEEEEEECCCC----------CEEEEEecCCCcceEEEEEe--
Confidence            34556663222234679999997  566666553  689999999975          22333321 11122245554  


Q ss_pred             CCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCC
Q 004468          159 NPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDA  238 (751)
Q Consensus       159 ~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~  238 (751)
                      +++++++.-.++.+.++|..+.+..              .....+       .+ .     ...+++++ ..++++..++
T Consensus        75 g~~lyv~t~~~~~v~viD~~t~~v~--------------~~i~~g-------~~-~-----g~glt~Dg-~~l~vs~gs~  126 (266)
T 2iwa_A           75 NEKLYQVVWLKNIGFIYDRRTLSNI--------------KNFTHQ-------MK-D-----GWGLATDG-KILYGSDGTS  126 (266)
T ss_dssp             TTEEEEEETTCSEEEEEETTTTEEE--------------EEEECC-------SS-S-----CCEEEECS-SSEEEECSSS
T ss_pred             CCEEEEEEecCCEEEEEECCCCcEE--------------EEEECC-------CC-C-----eEEEEECC-CEEEEECCCC
Confidence            4566767777899999999876522              111100       00 1     12355544 4444555789


Q ss_pred             eEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcceeee
Q 004468          239 FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRY  318 (751)
Q Consensus       239 ~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~~~  318 (751)
                      .|.++|..+.+.+..+....                .+..-..++.+.|. +|...+....++.|.+.|..+++......
T Consensus       127 ~l~viD~~t~~v~~~I~Vg~----------------~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~  189 (266)
T 2iwa_A          127 ILYEIDPHTFKLIKKHNVKY----------------NGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWIL  189 (266)
T ss_dssp             EEEEECTTTCCEEEEEECEE----------------TTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEE
T ss_pred             eEEEEECCCCcEEEEEEECC----------------CCcccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEE
Confidence            99999998876554432110                01111126778888 77544444468999999999976444333


Q ss_pred             ecC-------------CCceeEEeCCCCCCc
Q 004468          319 TVG-------------DASKIMSFTPTLNGL  336 (751)
Q Consensus       319 ~~~-------------~~~~~~~~sp~~~~~  336 (751)
                      ..+             .....++|+|+.+.+
T Consensus       190 ~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~l  220 (266)
T 2iwa_A          190 LPNLRKKLIDEGFRDIDVLNGIAWDQENKRI  220 (266)
T ss_dssp             CHHHHHHHHHTTCTTCCCEEEEEEETTTTEE
T ss_pred             CCCcccccccccccccCceEEEEEcCCCCEE
Confidence            211             245677787776544

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.48  E-value=0.029  Score=58.29  Aligned_cols=207  Identities=9%  Similarity=0.046  Sum_probs=127.6

Q ss_pred             cEEEEEECCC-CCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCC
Q 004468           52 CVNAISWNSK-GSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGR  130 (751)
Q Consensus        52 ~V~~l~~s~d-g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~  130 (751)
                      .+.+|+|.+. +.+..+-...+.|..+++..+.....+....-.....+++.+.. +.++++-...+.|.++++....  
T Consensus        36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~-g~ly~~d~~~~~I~~~~~dG~~--  112 (318)
T 3sov_A           36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLG-EKLYWTDSETNRIEVSNLDGSL--  112 (318)
T ss_dssp             EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTT-TEEEEEETTTTEEEEEETTSCS--
T ss_pred             ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCC-CeEEEEECCCCEEEEEECCCCc--
Confidence            5668999985 55666666778899999876532211212223456788888763 5666776677899999987421  


Q ss_pred             CCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEe-CCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceeccc
Q 004468          131 GLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSAS-EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLA  209 (751)
Q Consensus       131 ~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s-~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  209 (751)
                              ........-.....|++.|.++.++++-. ..+.|...++.....            ..+..          
T Consensus       113 --------~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~------------~~~~~----------  162 (318)
T 3sov_A          113 --------RKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR------------FIIIN----------  162 (318)
T ss_dssp             --------CEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSC------------EEEEC----------
T ss_pred             --------EEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCe------------EEEEE----------
Confidence                    11122234456789999987777777763 357888888764321            11111          


Q ss_pred             CCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcC
Q 004468          210 DPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP  289 (751)
Q Consensus       210 ~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fsp  289 (751)
                         ......+.++|+|++++++++=+..+.|..+|+.... ..             .+...      . ......+++..
T Consensus       163 ---~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~-~~-------------~~~~~------~-~~~P~glav~~  218 (318)
T 3sov_A          163 ---SEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTN-RQ-------------AVVKG------S-LPHPFALTLFE  218 (318)
T ss_dssp             ---SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CE-------------EEECS------C-CSCEEEEEEET
T ss_pred             ---CCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCc-eE-------------EEecC------C-CCCceEEEEeC
Confidence               0123467899999766666666677899999986321 11             11100      0 11356777753


Q ss_pred             CCCEEEEEeCCCcEEEEECCCCCccee
Q 004468          290 NGEEVLLSYSGEHVYLMDVNHAGGRAM  316 (751)
Q Consensus       290 dg~~Ll~~s~d~~I~lwdl~~~~~~~~  316 (751)
                       +..+.+-...+.|..++..+++....
T Consensus       219 -~~lywtd~~~~~V~~~~~~~G~~~~~  244 (318)
T 3sov_A          219 -DILYWTDWSTHSILACNKYTGEGLRE  244 (318)
T ss_dssp             -TEEEEEETTTTEEEEEETTTCCSCEE
T ss_pred             -CEEEEEecCCCeEEEEECCCCCceEE
Confidence             34455666688999999977654433

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=97.43  E-value=0.00084  Score=58.93  Aligned_cols=100  Identities=23%  Similarity=0.165  Sum_probs=85.4

Q ss_pred             hhHHHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCc
Q 004468          362 KCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSF  441 (751)
Q Consensus       362 ~~~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~  441 (751)
                      ....+...+...+..|. |..|+..|.+++...+..      ...+.+++.++...+   +.-.|+.++.+++.++|.+.
T Consensus         3 ~a~~~~~~g~~~~~~~~-~~~A~~~~~~al~~~p~~------~~~~~~~a~~~~~~~---~~~~A~~~~~~al~~~p~~~   72 (126)
T 3upv_A            3 KAEEARLEGKEYFTKSD-WPNAVKAYTEMIKRAPED------ARGYSNRAAALAKLM---SFPEAIADCNKAIEKDPNFV   72 (126)
T ss_dssp             HHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCH
T ss_pred             hHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHhc---CHHHHHHHHHHHHHhCCCcH
Confidence            34556677778888888 999999999999877654      457888998888764   45678999999999999999


Q ss_pred             chHHHHHHHHHHhcchHHHHHHHHHhcccC
Q 004468          442 RAHLYMSEALEQLCKYKEALDFAIAAQCLD  471 (751)
Q Consensus       442 ~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~  471 (751)
                      .+++.++.++..++++.+|..++.......
T Consensus        73 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~  102 (126)
T 3upv_A           73 RAYIRKATAQIAVKEYASALETLDAARTKD  102 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCHHHHHHHHHHHHHhC
Confidence            999999999999999999999999888877

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=97.43  E-value=0.011  Score=59.07  Aligned_cols=171  Identities=9%  Similarity=0.004  Sum_probs=102.7

Q ss_pred             EEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEE
Q 004468           84 LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVV  163 (751)
Q Consensus        84 ~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l  163 (751)
                      .+.++...-..-...+.|..   +.++++.+.++.|+++|+.++          +.+..+  -..........+.+.+++
T Consensus        45 Vv~~~phd~~~ftqGL~~~~---~~Ly~stG~~g~v~~iD~~Tg----------kv~~~~--l~~~~FgeGit~~g~~Ly  109 (268)
T 3nok_A           45 IIREYPHATNAFTQGLVFHQ---GHFFESTGHQGTLRQLSLESA----------QPVWME--RLGNIFAEGLASDGERLY  109 (268)
T ss_dssp             EEEEEECCTTCCEEEEEEET---TEEEEEETTTTEEEECCSSCS----------SCSEEE--ECTTCCEEEEEECSSCEE
T ss_pred             EEEEEcCCCccccceEEEEC---CEEEEEcCCCCEEEEEECCCC----------cEEeEE--CCCCcceeEEEEeCCEEE
Confidence            44445222233346888873   578888899999999999975          223333  122333333334456777


Q ss_pred             EEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEE
Q 004468          164 WSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLY  243 (751)
Q Consensus       164 ~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~Iriw  243 (751)
                      +..-.++.+.+||..+.+..              -.        +.. +..   -..++  ++ +..|+++..++.|.++
T Consensus       110 ~ltw~~~~v~V~D~~Tl~~~--------------~t--------i~~-~~e---GwGLt--~D-g~~L~vSdGs~~l~~i  160 (268)
T 3nok_A          110 QLTWTEGLLFTWSGMPPQRE--------------RT--------TRY-SGE---GWGLC--YW-NGKLVRSDGGTMLTFH  160 (268)
T ss_dssp             EEESSSCEEEEEETTTTEEE--------------EE--------EEC-SSC---CCCEE--EE-TTEEEEECSSSEEEEE
T ss_pred             EEEccCCEEEEEECCcCcEE--------------EE--------EeC-CCc---eeEEe--cC-CCEEEEECCCCEEEEE
Confidence            77778999999999887532              10        000 001   12233  43 4566666679999999


Q ss_pred             eCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcce
Q 004468          244 DRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRA  315 (751)
Q Consensus       244 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~  315 (751)
                      |..+.+.+..+....                .+..-..++.+.|. +|+..+....++.|.+.|..+++...
T Consensus       161 Dp~T~~v~~~I~V~~----------------~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~  215 (268)
T 3nok_A          161 EPDGFALVGAVQVKL----------------RGQPVELINELECA-NGVIYANIWHSSDVLEIDPATGTVVG  215 (268)
T ss_dssp             CTTTCCEEEEEECEE----------------TTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEE
T ss_pred             cCCCCeEEEEEEeCC----------------CCcccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEE
Confidence            999887655432110                11111135667777 77544444468899999999976443

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=97.43  E-value=0.002  Score=59.56  Aligned_cols=124  Identities=17%  Similarity=0.087  Sum_probs=101.3

Q ss_pred             CcchhHHHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCC
Q 004468          359 GLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDS  438 (751)
Q Consensus       359 ~~~~~~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~  438 (751)
                      .......+...+...+..+. |..|+..|..++...+..      ...+.+++.+++..+   +.-.|+..+.+++.++|
T Consensus         7 ~~~~a~~~~~~g~~~~~~g~-~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~p   76 (164)
T 3sz7_A            7 PTPESDKLKSEGNAAMARKE-YSKAIDLYTQALSIAPAN------PIYLSNRAAAYSASG---QHEKAAEDAELATVVDP   76 (164)
T ss_dssp             CCHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCT
T ss_pred             hhhhHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCcC------HHHHHHHHHHHHHcc---CHHHHHHHHHHHHHhCC
Confidence            34456667778888888888 999999999999877654      457788888887754   45678999999999999


Q ss_pred             CCcchHHHHHHHHHHhcchHHHHHHHHHhcccCCCChh--hhHHHHHHHHHHHHHH
Q 004468          439 SSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSV--MAEKVENIKKHIAAAE  492 (751)
Q Consensus       439 ~~~~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~~--~~~~~~~~~~~~~~~~  492 (751)
                      .+..+++.++.++..++++.+|..++.......|....  ....+..+...+....
T Consensus        77 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~  132 (164)
T 3sz7_A           77 KYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTKRKIEEAN  132 (164)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999988898766  5566666666665543

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=97.42  E-value=0.0075  Score=62.67  Aligned_cols=199  Identities=9%  Similarity=0.041  Sum_probs=113.4

Q ss_pred             CcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccc------------------CCcceEEEEEecCCCCcEEEE
Q 004468           51 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETG------------------HSANVFCTKFVPETSDELVVS  112 (751)
Q Consensus        51 ~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~------------------h~~~V~~v~fsp~s~~~~l~s  112 (751)
                      ....+++|.++|++|.++..++.|..|+..++.........                  ....+..+++.++. +.+++ 
T Consensus        19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~-g~l~v-   96 (322)
T 2fp8_A           19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQN-NQLYI-   96 (322)
T ss_dssp             SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTT-TEEEE-
T ss_pred             CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCC-CcEEE-
Confidence            34568899999998888889999999998765433211000                  11357899999831 55444 


Q ss_pred             EECCCcEEEEECCCCCCCCCCCCCCCCceeec----c-cCCceeEEEEecCCCCEEEEEeC-----------------CC
Q 004468          113 GAGDAEVRLFNLSRFSGRGLDDNAITPSALYQ----C-HTRRVKKLAVEVGNPHVVWSASE-----------------DG  170 (751)
Q Consensus       113 gs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~----~-h~~~V~~l~~sp~~~~~l~s~s~-----------------Dg  170 (751)
                      +...+.|..+|...+.           +..+.    + .......+++.+.+++++++-..                 ++
T Consensus        97 ~d~~~~i~~~d~~~g~-----------~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g  165 (322)
T 2fp8_A           97 VDCYYHLSVVGSEGGH-----------ATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTG  165 (322)
T ss_dssp             EETTTEEEEECTTCEE-----------CEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCE
T ss_pred             EECCCCEEEEeCCCCE-----------EEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCc
Confidence            4444558888876321           11111    1 11346778887723355555322                 24


Q ss_pred             cEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEE-EEeCCCeEEEEeCCCCC
Q 004468          171 TLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLL-VGGSDAFARLYDRRMLP  249 (751)
Q Consensus       171 ~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~-sgs~D~~IriwD~~~~~  249 (751)
                      .|..||..+++.            ..+..              .......++|+|+ ++.|. +-...+.|.+|++....
T Consensus       166 ~v~~~d~~~~~~------------~~~~~--------------~~~~p~gia~~~d-g~~lyv~d~~~~~I~~~~~~~~~  218 (322)
T 2fp8_A          166 RLIKYDPSTKET------------TLLLK--------------ELHVPGGAEVSAD-SSFVLVAEFLSHQIVKYWLEGPK  218 (322)
T ss_dssp             EEEEEETTTTEE------------EEEEE--------------EESCCCEEEECTT-SSEEEEEEGGGTEEEEEESSSTT
T ss_pred             eEEEEeCCCCEE------------EEecc--------------CCccCcceEECCC-CCEEEEEeCCCCeEEEEECCCCc
Confidence            566666544321            00100              1123457899995 56444 44567899999987421


Q ss_pred             CccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeC----------CCcEEEEECC
Q 004468          250 PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS----------GEHVYLMDVN  309 (751)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~----------d~~I~lwdl~  309 (751)
                      . .          ....+.  ..      .. ...++++++|++.++...          .+.|..+|..
T Consensus       219 ~-~----------~~~~~~--~~------~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~  268 (322)
T 2fp8_A          219 K-G----------TAEVLV--KI------PN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEF  268 (322)
T ss_dssp             T-T----------CEEEEE--EC------SS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTT
T ss_pred             C-C----------ccceEE--eC------CC-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCC
Confidence            1 0          011111  00      11 567899999987666554          4567788764

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=97.42  E-value=0.011  Score=61.38  Aligned_cols=201  Identities=11%  Similarity=0.070  Sum_probs=113.0

Q ss_pred             CcEEEEEECC-CCCEEEEEeCCCcEEEEeCCCCeEEEEec---cc-CCcceEEEEEec-CCCCcEEEEEEC---------
Q 004468           51 GCVNAISWNS-KGSLLISGSDDTHINVWSYSSRKLLHSIE---TG-HSANVFCTKFVP-ETSDELVVSGAG---------  115 (751)
Q Consensus        51 ~~V~~l~~s~-dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~---~~-h~~~V~~v~fsp-~s~~~~l~sgs~---------  115 (751)
                      +.+..|++.+ +|+++++ ...+.|.++|..++.. ..+.   .+ .......+++.| +  |.++++-..         
T Consensus        80 ~~p~gi~~~~~~g~l~v~-d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~--G~l~v~d~~~~~~~~~~~  155 (322)
T 2fp8_A           80 GRTYDISYNLQNNQLYIV-DCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRT--GIVYFTDVSTLYDDRGVQ  155 (322)
T ss_dssp             CCEEEEEEETTTTEEEEE-ETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTT--CCEEEEESCSSCCTTCHH
T ss_pred             CCCceEEEcCCCCcEEEE-ECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCC--CEEEEECCcccccccccc
Confidence            3578999997 6665554 4445588888775532 2221   11 123478899999 7  777776432         


Q ss_pred             --------CCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCC
Q 004468          116 --------DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAG  187 (751)
Q Consensus       116 --------Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~  187 (751)
                              ++.|..||.....           +..+...-.....|+|+|++..++++-...+.|..||+......    
T Consensus       156 ~~~~~~~~~g~v~~~d~~~~~-----------~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~----  220 (322)
T 2fp8_A          156 QIMDTSDKTGRLIKYDPSTKE-----------TTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKG----  220 (322)
T ss_dssp             HHHHHTCCCEEEEEEETTTTE-----------EEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTT----
T ss_pred             eehcccCCCceEEEEeCCCCE-----------EEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCC----
Confidence                    3668888876421           22222222345679999944345666677789999998753210    


Q ss_pred             CCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeC----------CCeEEEEeCCCCCCccccCCC
Q 004468          188 SSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGS----------DAFARLYDRRMLPPLTSCQKR  257 (751)
Q Consensus       188 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~----------D~~IriwD~~~~~~~~~~~~~  257 (751)
                           ....+.+           .+   . ...+++.++ +++.++...          .+.|..+|.. ++.+..+.. 
T Consensus       221 -----~~~~~~~-----------~~---g-P~gi~~d~~-G~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~-  277 (322)
T 2fp8_A          221 -----TAEVLVK-----------IP---N-PGNIKRNAD-GHFWVSSSEELDGNMHGRVDPKGIKFDEF-GNILEVIPL-  277 (322)
T ss_dssp             -----CEEEEEE-----------CS---S-EEEEEECTT-SCEEEEEEEETTSSTTSCEEEEEEEECTT-SCEEEEEEC-
T ss_pred             -----ccceEEe-----------CC---C-CCCeEECCC-CCEEEEecCcccccccCCCccEEEEECCC-CCEEEEEEC-
Confidence                 0111111           11   1 567889985 565555443          4667888764 332221110 


Q ss_pred             CCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004468          258 MSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (751)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~  310 (751)
                                 +     .+.....++.+++ .+++.++++...+.|..+++..
T Consensus       278 -----------~-----~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~  313 (322)
T 2fp8_A          278 -----------P-----PPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDK  313 (322)
T ss_dssp             -----------C-----TTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC--
T ss_pred             -----------C-----CCCccccceEEEE-eCCEEEEeecCCCceEEEeccc
Confidence                       0     0100113566666 4565555555688999999876

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=97.39  E-value=0.0057  Score=71.87  Aligned_cols=120  Identities=13%  Similarity=0.091  Sum_probs=72.1

Q ss_pred             cCCC-cEEEEEEC-CCCCEEEEEeC-C----CcEEEEeCCCC-eEEEEecccCCcceEEEEEecCCCCcEEEEEECC---
Q 004468           48 GHQG-CVNAISWN-SKGSLLISGSD-D----THINVWSYSSR-KLLHSIETGHSANVFCTKFVPETSDELVVSGAGD---  116 (751)
Q Consensus        48 gH~~-~V~~l~~s-~dg~~LaSgs~-D----g~I~IWd~~~~-~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~D---  116 (751)
                      +|.- .+...+|| |||++||-+.. +    .+|+++|+.++ +.+...   -......+.|+|+  ++.|+....|   
T Consensus       170 ~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~---~~~~~~~~~WspD--g~~l~y~~~d~~~  244 (751)
T 2xe4_A          170 GKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADK---VSGTNGEIVWGPD--HTSLFYVTKDETL  244 (751)
T ss_dssp             TCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCC---EEEECSCCEECSS--TTEEEEEEECTTC
T ss_pred             CCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcc---ccCceeeEEEecC--CCEEEEEEECCCC
Confidence            3443 67889999 99998885432 2    35999999988 632211   0122457899999  6666665555   


Q ss_pred             --CcEEEEECCCCCCCCCCCCCCCCceeec-ccCCceeEEEEecCCCCEEEEEeC--CCcEEEEecCCC
Q 004468          117 --AEVRLFNLSRFSGRGLDDNAITPSALYQ-CHTRRVKKLAVEVGNPHVVWSASE--DGTLRQHDFRQG  180 (751)
Q Consensus       117 --g~V~vwd~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~l~~sp~~~~~l~s~s~--Dg~I~iwDlr~~  180 (751)
                        ..|.++++.+...        +....+. .+......+.|+|++..++++...  ...|.++|+.++
T Consensus       245 ~~~~v~~~~lgt~~~--------~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~  305 (751)
T 2xe4_A          245 RENKVWRHVMGKLQS--------EDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKG  305 (751)
T ss_dssp             CEEEEEEEETTSCGG--------GCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSC
T ss_pred             CCCEEEEEECCCCch--------hcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCC
Confidence              3577888765321        1122222 223445678999954434444432  235677777664

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=97.37  E-value=0.02  Score=60.74  Aligned_cols=106  Identities=13%  Similarity=0.108  Sum_probs=67.7

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCeEEEEecccC--------CcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCC
Q 004468           61 KGSLLISGSDDTHINVWSYSSRKLLHSIETGH--------SANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGL  132 (751)
Q Consensus        61 dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h--------~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~  132 (751)
                      .+..|..++.++.|..+|..+++.+..+....        ...+.+.-. ..  +..|+.++.++.|..+|..++.    
T Consensus        52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~v~v~~~~g~l~a~d~~tG~----  124 (376)
T 3q7m_A           52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVT-VS--GGHVYIGSEKAQVYALNTSDGT----  124 (376)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEE-EE--TTEEEEEETTSEEEEEETTTCC----
T ss_pred             ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCce-Ee--CCEEEEEcCCCEEEEEECCCCC----
Confidence            35678888889999999999999887763321        122322222 22  4678888899999999998652    


Q ss_pred             CCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCC
Q 004468          133 DDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSS  182 (751)
Q Consensus       133 ~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~  182 (751)
                            .+................  + ..++.++.++.|..+|.++++.
T Consensus       125 ------~~W~~~~~~~~~~~p~~~--~-~~v~v~~~~g~l~~~d~~tG~~  165 (376)
T 3q7m_A          125 ------VAWQTKVAGEALSRPVVS--D-GLVLIHTSNGQLQALNEADGAV  165 (376)
T ss_dssp             ------EEEEEECSSCCCSCCEEE--T-TEEEEECTTSEEEEEETTTCCE
T ss_pred             ------EEEEEeCCCceEcCCEEE--C-CEEEEEcCCCeEEEEECCCCcE
Confidence                  232332222211222222  3 3666788899999999988763

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=97.30  E-value=0.016  Score=57.83  Aligned_cols=173  Identities=12%  Similarity=0.122  Sum_probs=101.1

Q ss_pred             EEEEecccCCcceEEEEEecCCCCcEEEEEECCC--cEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCC
Q 004468           84 LLHSIETGHSANVFCTKFVPETSDELVVSGAGDA--EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPH  161 (751)
Q Consensus        84 ~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg--~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~  161 (751)
                      .+.++...-..-...+.|+ +  +.++++++.+|  .|+++|+.++          +.+..+.- ..........+.+.+
T Consensus        33 vv~~~phd~~~ftqGL~~~-~--~~LyestG~~g~S~v~~vD~~Tg----------kv~~~~~l-~~~~FgeGit~~g~~   98 (262)
T 3nol_A           33 IVHSYPHDTKAFTEGFFYR-N--GYFYESTGLNGRSSIRKVDIESG----------KTLQQIEL-GKRYFGEGISDWKDK   98 (262)
T ss_dssp             EEEEEECCTTCEEEEEEEE-T--TEEEEEEEETTEEEEEEECTTTC----------CEEEEEEC-CTTCCEEEEEEETTE
T ss_pred             EEEEecCCCCcccceEEEE-C--CEEEEECCCCCCceEEEEECCCC----------cEEEEEec-CCccceeEEEEeCCE
Confidence            4455522223334788888 5  67778888776  8999999975          33344332 223333333343556


Q ss_pred             EEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEE
Q 004468          162 VVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFAR  241 (751)
Q Consensus       162 ~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~Ir  241 (751)
                      +++..-.++.+.+||..+.+...              .        +.. +.     ....++++ +..|+++..++.|.
T Consensus        99 ly~ltw~~~~v~v~D~~t~~~~~--------------t--------i~~-~~-----eG~glt~d-g~~L~~SdGs~~i~  149 (262)
T 3nol_A           99 IVGLTWKNGLGFVWNIRNLRQVR--------------S--------FNY-DG-----EGWGLTHN-DQYLIMSDGTPVLR  149 (262)
T ss_dssp             EEEEESSSSEEEEEETTTCCEEE--------------E--------EEC-SS-----CCCCEEEC-SSCEEECCSSSEEE
T ss_pred             EEEEEeeCCEEEEEECccCcEEE--------------E--------EEC-CC-----CceEEecC-CCEEEEECCCCeEE
Confidence            66666678999999998876320              0        000 00     11223343 34555555578999


Q ss_pred             EEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCCccee
Q 004468          242 LYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAM  316 (751)
Q Consensus       242 iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~  316 (751)
                      ++|..+.+.+..+...                ..+..-..++.+.|. +|+..+....++.|.+.|..+++....
T Consensus       150 ~iDp~T~~v~~~I~V~----------------~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~  207 (262)
T 3nol_A          150 FLDPESLTPVRTITVT----------------AHGEELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGI  207 (262)
T ss_dssp             EECTTTCSEEEEEECE----------------ETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEE
T ss_pred             EEcCCCCeEEEEEEec----------------cCCccccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEE
Confidence            9999987755443210                011111135567776 776554455688999999999764433

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=97.29  E-value=0.0022  Score=66.50  Aligned_cols=194  Identities=12%  Similarity=0.095  Sum_probs=116.4

Q ss_pred             EeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEEC
Q 004468           45 ELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNL  124 (751)
Q Consensus        45 ~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~  124 (751)
                      .+..+...+.++...++|. |..|+.++.|..+|.. ++.+..+ ......+.++.+.++  +.+++..   +.|..+| 
T Consensus       131 ~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~-~~~~~~~~~~~~d~~--g~l~v~t---~~l~~~d-  201 (330)
T 3hxj_A          131 RFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRF-KTNDAITSAASIGKD--GTIYFGS---DKVYAIN-  201 (330)
T ss_dssp             EEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEE-ECSSCCCSCCEECTT--CCEEEES---SSEEEEC-
T ss_pred             EEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEE-ecCCCceeeeEEcCC--CEEEEEe---CEEEEEC-
Confidence            3333444556666776777 5557788999999998 7777666 344556677777666  5555443   7888898 


Q ss_pred             CCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCc
Q 004468          125 SRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGA  204 (751)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~  204 (751)
                      ..+          +.+..+......+.++...+ ++ .++.++.++.|..+|. ++.              .++....+ 
T Consensus       202 ~~g----------~~~~~~~~~~~~~~~~~~~~-~g-~l~v~t~~~gl~~~~~-~g~--------------~~~~~~~~-  253 (330)
T 3hxj_A          202 PDG----------TEKWNFYAGYWTVTRPAISE-DG-TIYVTSLDGHLYAINP-DGT--------------EKWRFKTG-  253 (330)
T ss_dssp             TTS----------CEEEEECCSSCCCSCCEECT-TS-CEEEEETTTEEEEECT-TSC--------------EEEEEECS-
T ss_pred             CCC----------cEEEEEccCCcceeceEECC-CC-eEEEEcCCCeEEEECC-CCC--------------EeEEeeCC-
Confidence            432          22334444456678888876 43 4557778888888874 222              12221111 


Q ss_pred             eecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEE
Q 004468          205 KRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTH  284 (751)
Q Consensus       205 ~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~  284 (751)
                                ...+.++.+.+  ...|.+++.++.|..+|. +++.+..+.                +     ....+.+
T Consensus       254 ----------~~~~~~~~~~~--~g~l~v~t~~ggl~~~d~-~g~~~~~~~----------------~-----~~~~~~~  299 (330)
T 3hxj_A          254 ----------KRIESSPVIGN--TDTIYFGSYDGHLYAINP-DGTEKWNFE----------------T-----GSWIIAT  299 (330)
T ss_dssp             ----------SCCCSCCEECT--TSCEEEECTTCEEEEECT-TSCEEEEEE----------------C-----SSCCCSC
T ss_pred             ----------CCccccceEcC--CCeEEEecCCCCEEEECC-CCcEEEEEE----------------c-----CCccccc
Confidence                      01112234443  346777888889999985 443222110                0     0113566


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEECCC
Q 004468          285 VTFSPNGEEVLLSYSGEHVYLMDVNH  310 (751)
Q Consensus       285 v~fspdg~~Ll~~s~d~~I~lwdl~~  310 (751)
                      +..+++|. |.+++.+|.+++.....
T Consensus       300 ~~~d~~g~-l~~gt~~G~~~~~~~~~  324 (330)
T 3hxj_A          300 PVIDENGT-IYFGTRNGKFYALFNLE  324 (330)
T ss_dssp             CEECTTCC-EEEECTTSCEEEEEC--
T ss_pred             eEEcCCCE-EEEEcCCCeEEEEeccc
Confidence            77778876 67789999999988765

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=97.27  E-value=0.068  Score=55.33  Aligned_cols=183  Identities=11%  Similarity=0.057  Sum_probs=112.9

Q ss_pred             CcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCC-CCCCCCCCCCCceeecccCCce
Q 004468           72 THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFS-GRGLDDNAITPSALYQCHTRRV  150 (751)
Q Consensus        72 g~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~-~~~~~~~~~~~~~~~~~h~~~V  150 (751)
                      ..|+..|+.+......+  .....+..++|.+.. +.++++-...+.|..+++.... +.       .....+...-..+
T Consensus        10 ~~I~~i~~~~~~~~~~~--~~~~~p~g~~~d~~~-~~ly~~D~~~~~I~~~~~~g~~~~~-------~~~~~~~~~~~~p   79 (316)
T 1ijq_A           10 HEVRKMTLDRSEYTSLI--PNLRNVVALDTEVAS-NRIYWSDLSQRMICSTQLDRAHGVS-------SYDTVISRDIQAP   79 (316)
T ss_dssp             SSEEEEETTSCCCEEEE--CSCSSEEEEEEETTT-TEEEEEETTTTEEEEEEC---------------CEEEECSSCSCC
T ss_pred             CeEEEEECCCcceEehh--cCCCceEEEEEEeCC-CEEEEEECCCCcEEEEECCCCCCCc-------ccEEEEeCCCCCc
Confidence            46888898876655444  234568899999873 4566666677899999987410 00       1111222223456


Q ss_pred             eEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcE
Q 004468          151 KKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHL  230 (751)
Q Consensus       151 ~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~  230 (751)
                      ..+++.+.+++++++-...+.|.++|+....            ...+...             .......+++.|.++.+
T Consensus        80 ~glavd~~~~~ly~~d~~~~~I~~~~~~g~~------------~~~~~~~-------------~~~~P~~iavdp~~g~l  134 (316)
T 1ijq_A           80 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVK------------RKTLFRE-------------NGSKPRAIVVDPVHGFM  134 (316)
T ss_dssp             CEEEEETTTTEEEEEETTTTEEEEEETTSSS------------EEEEEEC-------------TTCCEEEEEEETTTTEE
T ss_pred             CEEEEeecCCeEEEEECCCCEEEEEeCCCCc------------eEEEEEC-------------CCCCcceEEeCCCCCEE
Confidence            7899987677788888888999999976432            1112110             12346789999965655


Q ss_pred             EEEEeCC-CeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEe-CCCcEEEEEC
Q 004468          231 LLVGGSD-AFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSY-SGEHVYLMDV  308 (751)
Q Consensus       231 l~sgs~D-~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s-~d~~I~lwdl  308 (751)
                      +++.... +.|..+++.... .             +.+...       .....+.++++|++..|+.+. ..+.|+.+|+
T Consensus       135 y~~d~~~~~~I~~~~~dG~~-~-------------~~~~~~-------~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~  193 (316)
T 1ijq_A          135 YWTDWGTPAKIKKGGLNGVD-I-------------YSLVTE-------NIQWPNGITLDLLSGRLYWVDSKLHSISSIDV  193 (316)
T ss_dssp             EEEECSSSCEEEEEETTSCC-E-------------EEEECS-------SCSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             EEEccCCCCeEEEEcCCCCC-e-------------EEEEEC-------CCCCceEEEEeccCCEEEEEECCCCeEEEEec
Confidence            5555443 678888764211 1             001000       011378999999877766554 5679999999


Q ss_pred             CC
Q 004468          309 NH  310 (751)
Q Consensus       309 ~~  310 (751)
                      +.
T Consensus       194 dg  195 (316)
T 1ijq_A          194 NG  195 (316)
T ss_dssp             TS
T ss_pred             CC
Confidence            86

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.27  E-value=0.082  Score=61.93  Aligned_cols=226  Identities=7%  Similarity=-0.032  Sum_probs=133.5

Q ss_pred             CCCcEEEEEECCC-CCEEEEEeCCCcEEEEeCCCC----eEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEE
Q 004468           49 HQGCVNAISWNSK-GSLLISGSDDTHINVWSYSSR----KLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFN  123 (751)
Q Consensus        49 H~~~V~~l~~s~d-g~~LaSgs~Dg~I~IWd~~~~----~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd  123 (751)
                      ....+..|+|.+. +.++++-...+.|+.+++...    .....+ .........|++.+.. +.++++-...+.|.+.+
T Consensus       422 ~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi-~~~l~~P~GLAvD~~~-~~LY~tD~~~~~I~v~~  499 (791)
T 3m0c_C          422 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI-SRDIQAPDGLAVDWIH-SNIYWTDSVLGTVSVAD  499 (791)
T ss_dssp             SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEE-CSSCSCCCEEEEETTT-TEEEEEETTTTEEEEEE
T ss_pred             CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEE-ecCCCCcceeeeeecC-CcEEEEecCCCeEEEEe
Confidence            3456778999984 455556666778888888642    122222 3344567789998873 46666777788999999


Q ss_pred             CCCCCCCCCCCCCCCCceee-cccCCceeEEEEecCCCCEEEEEeCC-CcEEEEecCCCCCCCCCCCCCCccceEEEecc
Q 004468          124 LSRFSGRGLDDNAITPSALY-QCHTRRVKKLAVEVGNPHVVWSASED-GTLRQHDFRQGSSCPPAGSSHQECRNILLDLR  201 (751)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~-~~h~~~V~~l~~sp~~~~~l~s~s~D-g~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~  201 (751)
                      +...           ...++ ...-.....|++.|..+.++|+-... +.|...++.....            .++..  
T Consensus       500 ldG~-----------~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~------------~~lv~--  554 (791)
T 3m0c_C          500 TKGV-----------KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI------------YSLVT--  554 (791)
T ss_dssp             TTSS-----------SEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE------------EEEEC--
T ss_pred             CCCC-----------eEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCce------------EEEEe--
Confidence            8742           12222 23345588999999777888876444 7788888764321            11211  


Q ss_pred             cCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccc
Q 004468          202 CGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLH  281 (751)
Q Consensus       202 ~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  281 (751)
                                 ......+.|++.+.+++++++=.....|..+++...... .+             ...    .+... .
T Consensus       555 -----------~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~-~v-------------~~~----~~~l~-~  604 (791)
T 3m0c_C          555 -----------ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK-TI-------------LED----EKRLA-H  604 (791)
T ss_dssp             -----------SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-EE-------------EEC----TTTTS-S
T ss_pred             -----------CCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceE-EE-------------ecC----CCccC-C
Confidence                       122467889999866666666566778999988543211 10             000    00001 2


Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcceeeee-cCCCceeEEeCCC
Q 004468          282 LTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYT-VGDASKIMSFTPT  332 (751)
Q Consensus       282 vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~~~~-~~~~~~~~~~sp~  332 (751)
                      ...|++.. +..+++-...+.|+..|..++........ ...+..+..|+|.
T Consensus       605 P~glav~~-~~lYwtD~~~~~I~~~dk~tG~~~~~l~~~l~~P~~i~v~h~~  655 (791)
T 3m0c_C          605 PFSLAVFE-DKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLFHNL  655 (791)
T ss_dssp             EEEEEEET-TEEEEEETTTTEEEEEETTTCCCCEEEECSCSCCCCEEEESGG
T ss_pred             CCEEEEeC-CEEEEEECCCCEEEEEeCCCCcceEEeecCCCCceeEeeeccc
Confidence            45666633 24444555678999999877654444432 2334444445554

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=97.13  E-value=0.0056  Score=63.36  Aligned_cols=176  Identities=10%  Similarity=0.061  Sum_probs=106.3

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCce
Q 004468           62 GSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSA  141 (751)
Q Consensus        62 g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~  141 (751)
                      +..|..++.++.|..+|.. ++..... ..+...+.++...++  +. |..++.++.|..+|.. +          +.+.
T Consensus       107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~-~~~~~~~~~~~~~~~--g~-l~vgt~~~~l~~~d~~-g----------~~~~  170 (330)
T 3hxj_A          107 EDILYVTSMDGHLYAINTD-GTEKWRF-KTKKAIYATPIVSED--GT-IYVGSNDNYLYAINPD-G----------TEKW  170 (330)
T ss_dssp             TTEEEEECTTSEEEEECTT-SCEEEEE-ECSSCCCSCCEECTT--SC-EEEECTTSEEEEECTT-S----------CEEE
T ss_pred             CCEEEEEecCCEEEEEcCC-CCEEEEE-cCCCceeeeeEEcCC--CE-EEEEcCCCEEEEECCC-C----------CEeE
Confidence            4457778888999999988 7776666 344455666666655  44 5557778999999987 3          2233


Q ss_pred             eecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEE
Q 004468          142 LYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSC  221 (751)
Q Consensus       142 ~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i  221 (751)
                      .+......+.++.+.+ ++.++ .++  +.|..+| .+++              .++....           ....+.++
T Consensus       171 ~~~~~~~~~~~~~~d~-~g~l~-v~t--~~l~~~d-~~g~--------------~~~~~~~-----------~~~~~~~~  220 (330)
T 3hxj_A          171 RFKTNDAITSAASIGK-DGTIY-FGS--DKVYAIN-PDGT--------------EKWNFYA-----------GYWTVTRP  220 (330)
T ss_dssp             EEECSSCCCSCCEECT-TCCEE-EES--SSEEEEC-TTSC--------------EEEEECC-----------SSCCCSCC
T ss_pred             EEecCCCceeeeEEcC-CCEEE-EEe--CEEEEEC-CCCc--------------EEEEEcc-----------CCcceece
Confidence            4444455667777765 44544 455  8888998 5543              1222111           11335666


Q ss_pred             EEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCC
Q 004468          222 DISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGE  301 (751)
Q Consensus       222 ~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~  301 (751)
                      .+.++ + .|.+++.++.|..+|. ++..+..+.             .      .. . .+..+.+.++| .|.+++.++
T Consensus       221 ~~~~~-g-~l~v~t~~~gl~~~~~-~g~~~~~~~-------------~------~~-~-~~~~~~~~~~g-~l~v~t~~g  275 (330)
T 3hxj_A          221 AISED-G-TIYVTSLDGHLYAINP-DGTEKWRFK-------------T------GK-R-IESSPVIGNTD-TIYFGSYDG  275 (330)
T ss_dssp             EECTT-S-CEEEEETTTEEEEECT-TSCEEEEEE-------------C------SS-C-CCSCCEECTTS-CEEEECTTC
T ss_pred             EECCC-C-eEEEEcCCCeEEEECC-CCCEeEEee-------------C------CC-C-ccccceEcCCC-eEEEecCCC
Confidence            67763 3 5666777888888874 332221110             0      00 0 12234455566 577788888


Q ss_pred             cEEEEEC
Q 004468          302 HVYLMDV  308 (751)
Q Consensus       302 ~I~lwdl  308 (751)
                      .|+.+|.
T Consensus       276 gl~~~d~  282 (330)
T 3hxj_A          276 HLYAINP  282 (330)
T ss_dssp             EEEEECT
T ss_pred             CEEEECC
Confidence            9999996

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=97.12  E-value=0.0076  Score=64.01  Aligned_cols=182  Identities=12%  Similarity=0.094  Sum_probs=106.0

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcc------eEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCC
Q 004468           62 GSLLISGSDDTHINVWSYSSRKLLHSIETGHSAN------VFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDN  135 (751)
Q Consensus        62 g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~------V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~  135 (751)
                      +..++.++.++.|..+|..+++.+..........      +..+.-.|.-.+..++.++.++.|..+|..++.       
T Consensus       188 ~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~-------  260 (376)
T 3q7m_A          188 FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQ-------  260 (376)
T ss_dssp             TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCC-------
T ss_pred             CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCc-------
Confidence            3467778889999999999998887763221110      000111111014577778889999999998642       


Q ss_pred             CCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCc
Q 004468          136 AITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQT  215 (751)
Q Consensus       136 ~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  215 (751)
                         .+....  ......+...  + ..++.++.++.|..+|..+++.              +|.....          ..
T Consensus       261 ---~~w~~~--~~~~~~~~~~--~-~~l~~~~~~g~l~~~d~~tG~~--------------~w~~~~~----------~~  308 (376)
T 3q7m_A          261 ---IMWKRE--LGSVNDFIVD--G-NRIYLVDQNDRVMALTIDGGVT--------------LWTQSDL----------LH  308 (376)
T ss_dssp             ---EEEEEC--CCCEEEEEEE--T-TEEEEEETTCCEEEEETTTCCE--------------EEEECTT----------TT
T ss_pred             ---EEeecc--CCCCCCceEE--C-CEEEEEcCCCeEEEEECCCCcE--------------EEeeccc----------CC
Confidence               222222  2234444443  3 4666788899999999988752              2321100          00


Q ss_pred             cceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEE
Q 004468          216 LSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVL  295 (751)
Q Consensus       216 ~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll  295 (751)
                      ..+....+.   +..|++++.++.|.++|..+++.+......                ....    ......  .+..|+
T Consensus       309 ~~~~~~~~~---~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~----------------~~~~----~~~~~~--~~~~l~  363 (376)
T 3q7m_A          309 RLLTSPVLY---NGNLVVGDSEGYLHWINVEDGRFVAQQKVD----------------SSGF----QTEPVA--ADGKLL  363 (376)
T ss_dssp             SCCCCCEEE---TTEEEEECTTSEEEEEETTTCCEEEEEECC----------------TTCB----CSCCEE--ETTEEE
T ss_pred             CcccCCEEE---CCEEEEEeCCCeEEEEECCCCcEEEEEecC----------------CCcc----eeCCEE--ECCEEE
Confidence            011112222   357888999999999999987754332110                0000    011111  256788


Q ss_pred             EEeCCCcEEEEE
Q 004468          296 LSYSGEHVYLMD  307 (751)
Q Consensus       296 ~~s~d~~I~lwd  307 (751)
                      +++.+|.|+.||
T Consensus       364 v~~~~G~l~~~~  375 (376)
T 3q7m_A          364 IQAKDGTVYSIT  375 (376)
T ss_dssp             EEBTTSCEEEEE
T ss_pred             EEeCCCEEEEEe
Confidence            999999999997

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=97.10  E-value=0.11  Score=55.67  Aligned_cols=193  Identities=12%  Similarity=0.066  Sum_probs=118.2

Q ss_pred             EEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceee
Q 004468           64 LLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALY  143 (751)
Q Consensus        64 ~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~  143 (751)
                      +|+.+. ...|+..++........+  .....+..++|.+.. +.++++-...+.|+.+++.......      .....+
T Consensus        85 ~ll~~~-~~~I~~i~l~~~~~~~~~--~~~~~~~~l~~d~~~-~~lywsD~~~~~I~~~~~~g~~~~~------~~~~~~  154 (400)
T 3p5b_L           85 YLFFTN-RHEVRKMTLDRSEYTSLI--PNLRNVVALDTEVAS-NRIYWSDLSQRMICSTQLDRAHGVS------SYDTVI  154 (400)
T ss_dssp             EEEEEE-TTEEEEECTTSCSCEEEE--CSCSCEEEEEEETTT-TEEEEEETTTTEEEEEEC------C------CCEEEE
T ss_pred             eeEEec-cceeEEEccCCcceeEec--cccCcceEEeeeecc-CceEEEecCCCeEEEEEcccCCCCC------cceEEE
Confidence            444443 357888888765444333  345678999999873 4555565667889999886421000      112233


Q ss_pred             cccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEE
Q 004468          144 QCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDI  223 (751)
Q Consensus       144 ~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~  223 (751)
                      .........|++.+.+++++++-...+.|.+.++....            ...+...             .......|++
T Consensus       155 ~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~------------~~~l~~~-------------~~~~P~~iav  209 (400)
T 3p5b_L          155 SRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK------------RKTLFRE-------------NGSKPRAIVV  209 (400)
T ss_dssp             CSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCS------------EEEEEEC-------------SSCCEEEEEE
T ss_pred             eCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCc------------eEEEEeC-------------CCCCcceEEE
Confidence            33445678899987677888888888999999887543            1122210             1234678999


Q ss_pred             eCCCCcEEEEEeC-CCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEe-CCC
Q 004468          224 SSTRPHLLLVGGS-DAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSY-SGE  301 (751)
Q Consensus       224 sp~~~~~l~sgs~-D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s-~d~  301 (751)
                      .|.++.++++-.. .+.|...++......              .+....       -...+.|++++++..|+.+- ..+
T Consensus       210 dp~~g~ly~td~~~~~~I~~~~~dG~~~~--------------~~~~~~-------l~~P~glavd~~~~~lY~aD~~~~  268 (400)
T 3p5b_L          210 DPVHGFMYWTDWGTPAKIKKGGLNGVDIY--------------SLVTEN-------IQWPNGITLDLLSGRLYWVDSKLH  268 (400)
T ss_dssp             ETTTTEEEEEECSSSCCEEEEETTSCSCE--------------EEECSS-------CSCEEEEEEETTTTEEEEEETTTT
T ss_pred             ecccCeEEEEeCCCCCEEEEEeCCCCccE--------------EEEECC-------CCceEEEEEEeCCCEEEEEECCCC
Confidence            9965555555433 367888877532211              010000       11478999999887777664 478


Q ss_pred             cEEEEECCCCC
Q 004468          302 HVYLMDVNHAG  312 (751)
Q Consensus       302 ~I~lwdl~~~~  312 (751)
                      .|+.+|++...
T Consensus       269 ~I~~~d~dG~~  279 (400)
T 3p5b_L          269 SISSIDVNGGN  279 (400)
T ss_dssp             EEEEEETTSCC
T ss_pred             EEEEEeCCCCc
Confidence            99999997643

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.10  E-value=0.083  Score=54.97  Aligned_cols=203  Identities=10%  Similarity=0.120  Sum_probs=118.9

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCC--CCc---E-EEEEEC--CCcEEEEECCCCCCCCC
Q 004468           61 KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPET--SDE---L-VVSGAG--DAEVRLFNLSRFSGRGL  132 (751)
Q Consensus        61 dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s--~~~---~-l~sgs~--Dg~V~vwd~~~~~~~~~  132 (751)
                      ...+++.....+-+.|||+ +|+.+..+ ..  +.++.|..-|.-  +|+   + ++|.-.  +++|.+|++....+   
T Consensus        39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~-~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~---  111 (355)
T 3amr_A           39 QNSKLITTNKKSGLVVYSL-DGKMLHSY-NT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNG---  111 (355)
T ss_dssp             GGCEEEEEETTTEEEEEET-TSCEEEEE-CC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTC---
T ss_pred             CccEEEEEcCCCCEEEEcC-CCcEEEEc-cC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCC---
Confidence            4456777778889999999 79998888 32  456777666631  022   2 334334  58999998853221   


Q ss_pred             CCCCCCCceeecc------cC-CceeEEEE--ecCCCC-EEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEeccc
Q 004468          133 DDNAITPSALYQC------HT-RRVKKLAV--EVGNPH-VVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRC  202 (751)
Q Consensus       133 ~~~~~~~~~~~~~------h~-~~V~~l~~--sp~~~~-~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~  202 (751)
                            ++..+..      .. ..+..+|+  +|..+. +++....+|.+.+|++.....-       .-....+-.+. 
T Consensus       112 ------~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g-------~~~~~lVR~f~-  177 (355)
T 3amr_A          112 ------TLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNG-------YISGKKVRAFK-  177 (355)
T ss_dssp             ------CEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTS-------CEEEEEEEEEE-
T ss_pred             ------ceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCC-------cccceEEEEec-
Confidence                  1222211      11 56777888  664444 5677788899999998542100       00001111111 


Q ss_pred             CceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccce
Q 004468          203 GAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHL  282 (751)
Q Consensus       203 ~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v  282 (751)
                                 ....+-.|.+.+. ...|.++-.+.-|..||.+-.....        ...+..+..      ++....+
T Consensus       178 -----------lgsq~EgcvvDd~-~g~Lyv~eEd~GIw~~da~p~~~~~--------~~~v~~~~~------g~l~aDv  231 (355)
T 3amr_A          178 -----------MNSQTEGMAADDE-YGRLYIAEEDEAIWKFSAEPDGGSN--------GTVIDRADG------RHLTRDI  231 (355)
T ss_dssp             -----------CSSCEEEEEEETT-TTEEEEEETTTEEEEEECSTTSCSC--------CEEEEEBSS------SSBCSCE
T ss_pred             -----------CCCCcceEEEcCC-CCeEEEecccceEEEEeCCcCCCCC--------ceEEEEecC------CccccCc
Confidence                       1135678888884 6788999998888777755211000        001111111      1111137


Q ss_pred             EEEEE--cCCCC-EEEEEe-CCCcEEEEECCC
Q 004468          283 THVTF--SPNGE-EVLLSY-SGEHVYLMDVNH  310 (751)
Q Consensus       283 t~v~f--spdg~-~Ll~~s-~d~~I~lwdl~~  310 (751)
                      ..|++  .++|+ ||++++ .++...+||...
T Consensus       232 EGLai~~~~~g~gyLivSsQG~~s~~Vydr~~  263 (355)
T 3amr_A          232 EGLTIYYAADGKGYLMASSQGNSSYAIYDRQG  263 (355)
T ss_dssp             EEEEEEECGGGCEEEEEEEGGGTEEEEEESST
T ss_pred             ceEEEEecCCCCEEEEEEcCCCCEEEEEECCC
Confidence            77777  56777 788887 478999999974

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=97.09  E-value=0.0065  Score=55.65  Aligned_cols=110  Identities=9%  Similarity=-0.121  Sum_probs=92.1

Q ss_pred             ccccCcchhHHHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHh
Q 004468          355 EVATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNAR  434 (751)
Q Consensus       355 ~~~~~~~~~~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~  434 (751)
                      .....|+....+...+...+..|. |..|+..|..++...+..      ...+.+.+.++...+-   .-.|+....+++
T Consensus        28 al~l~p~~~~~~~~lg~~~~~~g~-~~eA~~~~~~al~~~P~~------~~~~~~lg~~~~~~g~---~~~Ai~~~~~al   97 (151)
T 3gyz_A           28 INAIPDDMMDDIYSYAYDFYNKGR-IEEAEVFFRFLCIYDFYN------VDYIMGLAAIYQIKEQ---FQQAADLYAVAF   97 (151)
T ss_dssp             GCCSCHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTC---HHHHHHHHHHHH
T ss_pred             HhCCCHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHcc---HHHHHHHHHHHH
Confidence            344566777777888888888888 999999999999877655      4467777887776543   456888899999


Q ss_pred             cCCCCCcchHHHHHHHHHHhcchHHHHHHHHHhcccCCCC
Q 004468          435 RIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSN  474 (751)
Q Consensus       435 ~~~~~~~~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~  474 (751)
                      .++|.++.+++.++.|+..+|++.+|..+++......|..
T Consensus        98 ~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~  137 (151)
T 3gyz_A           98 ALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDE  137 (151)
T ss_dssp             HHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred             hhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCH
Confidence            9999999999999999999999999999999998888864

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=97.05  E-value=0.048  Score=56.05  Aligned_cols=201  Identities=10%  Similarity=0.076  Sum_probs=110.5

Q ss_pred             CCcEEEEEECCCCCEEEEEeCCC--cEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCC
Q 004468           50 QGCVNAISWNSKGSLLISGSDDT--HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRF  127 (751)
Q Consensus        50 ~~~V~~l~~s~dg~~LaSgs~Dg--~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~  127 (751)
                      .+.++.|++.++|+++++.....  .|..++..+++...............++..+.  +..+++-..++.|.++|....
T Consensus        71 ~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~--~~~~v~d~~~g~i~~~d~~~~  148 (306)
T 2p4o_A           71 EGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSD--TQYLTADSYRGAIWLIDVVQP  148 (306)
T ss_dssp             SSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSS--SEEEEEETTTTEEEEEETTTT
T ss_pred             CCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCC--CcEEEEECCCCeEEEEeCCCC
Confidence            35688999999999777664432  46667777776543221122222344554444  445555556888888887642


Q ss_pred             CCCCC-CCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCC-CCCCCCCCCCCCccceEEEecccCce
Q 004468          128 SGRGL-DDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQ-GSSCPPAGSSHQECRNILLDLRCGAK  205 (751)
Q Consensus       128 ~~~~~-~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~-~~~~~~~~~~~~~~~~~l~~~~~~~~  205 (751)
                      .+... ....... ......-.....|  +|+++.++++-...+.|..||+.. +...         ....+...     
T Consensus       149 ~~~v~~~~~~~~~-~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~---------~~~~~~~~-----  211 (306)
T 2p4o_A          149 SGSIWLEHPMLAR-SNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPG---------EPEIFVEQ-----  211 (306)
T ss_dssp             EEEEEEECGGGSC-SSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBC---------CCEEEEES-----
T ss_pred             cEeEEEECCcccc-ccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCC---------ccEEEecc-----
Confidence            11100 0000000 0000111234455  775556777777889999999875 2210         01111110     


Q ss_pred             ecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEE
Q 004468          206 RSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHV  285 (751)
Q Consensus       206 ~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v  285 (751)
                                .....+++.++ ++++++....+.|.++|.. ++...           +... +  .   +  ....+++
T Consensus       212 ----------~~P~gi~vd~d-G~l~va~~~~~~V~~~~~~-G~~~~-----------~~~~-~--~---~--~~~p~~~  260 (306)
T 2p4o_A          212 ----------TNIDDFAFDVE-GNLYGATHIYNSVVRIAPD-RSTTI-----------IAQA-E--Q---G--VIGSTAV  260 (306)
T ss_dssp             ----------CCCSSEEEBTT-CCEEEECBTTCCEEEECTT-CCEEE-----------EECG-G--G---T--CTTEEEE
T ss_pred             ----------CCCCCeEECCC-CCEEEEeCCCCeEEEECCC-CCEEE-----------Eeec-c--c---c--cCCceEE
Confidence                      12456788885 6777776777889999864 32110           0000 0  0   0  0138899


Q ss_pred             EEc---CCCCEEEEEeCC
Q 004468          286 TFS---PNGEEVLLSYSG  300 (751)
Q Consensus       286 ~fs---pdg~~Ll~~s~d  300 (751)
                      +|.   |+++.|+++...
T Consensus       261 a~~g~~~d~~~LyVt~~~  278 (306)
T 2p4o_A          261 AFGQTEGDCTAIYVVTNG  278 (306)
T ss_dssp             EECCSTTTTTEEEEEECT
T ss_pred             EEecccCCCCEEEEECCC
Confidence            999   898888877654

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=97.02  E-value=0.0095  Score=68.79  Aligned_cols=115  Identities=16%  Similarity=0.078  Sum_probs=72.5

Q ss_pred             EEEECC-CCCEEEEEeCCC-----------cEEEEeCCCCeE--EEEecccCCcceEEEEEecCCCCcEEEEEEC-CCcE
Q 004468           55 AISWNS-KGSLLISGSDDT-----------HINVWSYSSRKL--LHSIETGHSANVFCTKFVPETSDELVVSGAG-DAEV  119 (751)
Q Consensus        55 ~l~~s~-dg~~LaSgs~Dg-----------~I~IWd~~~~~~--~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~-Dg~V  119 (751)
                      .+++.+ +|++++.|+.+.           .+.+||+.+++.  +..+...+.....++++.++  +.+++.|+. +..+
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~--g~lyv~GG~~~~~v  267 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGN--GQIVVTGGNDAKKT  267 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTT--SCEEEECSSSTTCE
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCC--CCEEEeCCCCCCce
Confidence            556667 899999988653           588999887653  23332334444445778887  789998884 5689


Q ss_pred             EEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEe-CC-----CcEEEEecCCCC
Q 004468          120 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSAS-ED-----GTLRQHDFRQGS  181 (751)
Q Consensus       120 ~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s-~D-----g~I~iwDlr~~~  181 (751)
                      .+||..+..-.        .+..+..... -.++++.+ ++++++.|+ .+     ..+.+||..+.+
T Consensus       268 ~~yd~~t~~W~--------~~~~~~~~R~-~~s~~~~~-dg~iyv~GG~~~~~~~~~~~e~yd~~t~~  325 (656)
T 1k3i_A          268 SLYDSSSDSWI--------PGPDMQVARG-YQSSATMS-DGRVFTIGGSWSGGVFEKNGEVYSPSSKT  325 (656)
T ss_dssp             EEEEGGGTEEE--------ECCCCSSCCS-SCEEEECT-TSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred             EEecCcCCcee--------ECCCCCcccc-ccceEEec-CCeEEEEeCcccCCcccccceEeCCCCCc
Confidence            99999854211        1111111111 12344555 668888888 44     568999987653

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=97.00  E-value=0.012  Score=67.97  Aligned_cols=71  Identities=8%  Similarity=0.146  Sum_probs=52.3

Q ss_pred             EEEECCCCCEEEEEeCCCc-------------------EEEEeCCCCeEEEEeccc-CC-------cceEEEEEecCCCC
Q 004468           55 AISWNSKGSLLISGSDDTH-------------------INVWSYSSRKLLHSIETG-HS-------ANVFCTKFVPETSD  107 (751)
Q Consensus        55 ~l~~s~dg~~LaSgs~Dg~-------------------I~IWd~~~~~~~~~l~~~-h~-------~~V~~v~fsp~s~~  107 (751)
                      .+++.+++.++..++.++.                   |..+|..+|+.+..+... |.       ..+....+..+  |
T Consensus       234 ~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~--G  311 (668)
T 1kv9_A          234 SMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNID--G  311 (668)
T ss_dssp             CEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEET--T
T ss_pred             ceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccC--C
Confidence            4788888888888877763                   999999999998887443 22       23333333334  4


Q ss_pred             c---EEEEEECCCcEEEEECCCC
Q 004468          108 E---LVVSGAGDAEVRLFNLSRF  127 (751)
Q Consensus       108 ~---~l~sgs~Dg~V~vwd~~~~  127 (751)
                      +   .|+.++.+|.++++|..++
T Consensus       312 ~~~~~v~~~~~~G~l~~lD~~tG  334 (668)
T 1kv9_A          312 KPRKVLMQAPKNGFFYVLDRTNG  334 (668)
T ss_dssp             EEEEEEEECCTTSEEEEEETTTC
T ss_pred             cEEEEEEEECCCCEEEEEECCCC
Confidence            4   6889999999999999865

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=96.99  E-value=0.0076  Score=54.78  Aligned_cols=110  Identities=15%  Similarity=-0.010  Sum_probs=89.0

Q ss_pred             cCcchhHHHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCC
Q 004468          358 TGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRID  437 (751)
Q Consensus       358 ~~~~~~~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~  437 (751)
                      ..+.....+...+...+..|. |..|+..+..++...+..      ...+.+++.++...+   +.-.|+..+.+++.++
T Consensus        16 ~~p~~~~~~~~~g~~~~~~g~-~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g---~~~~A~~~~~~al~l~   85 (148)
T 2vgx_A           16 ISSDTLEQLYSLAFNQYQSGX-YEDAHXVFQALCVLDHYD------SRFFLGLGACRQAMG---QYDLAIHSYSYGAVMD   85 (148)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHS
T ss_pred             CCHhhHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHcCccc------HHHHHHHHHHHHHHh---hHHHHHHHHHHHHhcC
Confidence            345556666777788888888 999999999999876654      345667777776543   3556888999999999


Q ss_pred             CCCcchHHHHHHHHHHhcchHHHHHHHHHhcccCCCChhh
Q 004468          438 SSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVM  477 (751)
Q Consensus       438 ~~~~~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~~~  477 (751)
                      |.++.+++.++.++..+|++.+|..++.......|.....
T Consensus        86 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~  125 (148)
T 2vgx_A           86 IXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEF  125 (148)
T ss_dssp             TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGG
T ss_pred             CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcc
Confidence            9999999999999999999999999999988887765544

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=96.95  E-value=0.0025  Score=74.06  Aligned_cols=205  Identities=6%  Similarity=-0.036  Sum_probs=117.5

Q ss_pred             CcEEEEEECCCCCEEE-EEeCCCcEEEEeCCC---CeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCC
Q 004468           51 GCVNAISWNSKGSLLI-SGSDDTHINVWSYSS---RKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSR  126 (751)
Q Consensus        51 ~~V~~l~~s~dg~~La-Sgs~Dg~I~IWd~~~---~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~  126 (751)
                      ..+..|+|++.+..|. +-...+.|..+++..   +.....+..........|++.+.. +.++++-...+.|.+.++..
T Consensus       406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~-g~LY~tD~~~~~I~v~d~dg  484 (699)
T 1n7d_A          406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH-SNIYWTDSVLGTVSVADTKG  484 (699)
T ss_dssp             TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSS-SBCEECCTTTSCEEEEBSSS
T ss_pred             cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeC-CcEEEEeccCCeEEEEecCC
Confidence            3456889998665554 444567899998875   111112211222345667887653 56666666678899999874


Q ss_pred             CCCCCCCCCCCCCceee-cccCCceeEEEEecCCCCEEEEEeCC-CcEEEEecCCCCCCCCCCCCCCccceEEEecccCc
Q 004468          127 FSGRGLDDNAITPSALY-QCHTRRVKKLAVEVGNPHVVWSASED-GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGA  204 (751)
Q Consensus       127 ~~~~~~~~~~~~~~~~~-~~h~~~V~~l~~sp~~~~~l~s~s~D-g~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~  204 (751)
                      .           ....+ .........|++.|.++.++++-... +.|..+++.....            .++..     
T Consensus       485 ~-----------~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~------------~~l~~-----  536 (699)
T 1n7d_A          485 V-----------KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI------------YSLVT-----  536 (699)
T ss_dssp             C-----------CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCC------------CEESC-----
T ss_pred             C-----------ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCe------------eEEEe-----
Confidence            2           12222 22234567889998777777765443 7787777654321            11110     


Q ss_pred             eecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEE
Q 004468          205 KRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTH  284 (751)
Q Consensus       205 ~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~  284 (751)
                              ......+.|+|+|.+++++++-...+.|..+|+..... ..+             .... ....    ....
T Consensus       537 --------~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~-~~~-------------~~~~-~~~~----~P~g  589 (699)
T 1n7d_A          537 --------ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTI-------------LEDE-KRLA----HPFS  589 (699)
T ss_dssp             --------SSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCC-EEE-------------CCCS-SSCS----SCCC
T ss_pred             --------CCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCce-EEE-------------EecC-CcCC----CceE
Confidence                    01234567899997677777777788999999864221 111             0000 0001    1334


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEECCCCC
Q 004468          285 VTFSPNGEEVLLSYSGEHVYLMDVNHAG  312 (751)
Q Consensus       285 v~fspdg~~Ll~~s~d~~I~lwdl~~~~  312 (751)
                      |++..+ ..+++....+.|..+|..+++
T Consensus       590 lavd~~-~lywtd~~~~~V~~~d~~~G~  616 (699)
T 1n7d_A          590 LAVFED-KVFWTDIINEAIFSANRLTGS  616 (699)
T ss_dssp             CEEETT-EEEEECSTTTCEEEEETTTEE
T ss_pred             eEEECC-EEEEEeCCCCeEEEEEccCCC
Confidence            555544 444455567899999987754

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=96.95  E-value=0.098  Score=54.23  Aligned_cols=185  Identities=7%  Similarity=0.031  Sum_probs=112.8

Q ss_pred             CCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCce
Q 004468           71 DTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRV  150 (751)
Q Consensus        71 Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V  150 (751)
                      ...|+..++........+.......+..++|.+.. +.++.+-...+.|..+++.....         ....+...-...
T Consensus        12 ~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~-~~lyw~D~~~~~I~r~~~~g~~~---------~~~~~~~~l~~p   81 (318)
T 3sov_A           12 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSH-GLIYWSDVSEEAIKRTEFNKTES---------VQNVVVSGLLSP   81 (318)
T ss_dssp             EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGG-TEEEEEETTTTEEEEEETTSSSC---------CCEEEEECCSCC
T ss_pred             cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCC-CEEEEEECCCCcEEEEEccCCCc---------eEEEEcCCCCCc
Confidence            35788899876531111112223467899999874 55666666778899999875311         111222223456


Q ss_pred             eEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcE
Q 004468          151 KKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHL  230 (751)
Q Consensus       151 ~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~  230 (751)
                      ..+++.+.++.++++-...+.|.++++.....            .++..             ........+++.|.++.+
T Consensus        82 ~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~------------~~l~~-------------~~~~~P~giavdp~~g~l  136 (318)
T 3sov_A           82 DGLACDWLGEKLYWTDSETNRIEVSNLDGSLR------------KVLFW-------------QELDQPRAIALDPSSGFM  136 (318)
T ss_dssp             CEEEEETTTTEEEEEETTTTEEEEEETTSCSC------------EEEEC-------------SSCSSEEEEEEEGGGTEE
T ss_pred             cEEEEEcCCCeEEEEECCCCEEEEEECCCCcE------------EEEEe-------------CCCCCccEEEEeCCCCEE
Confidence            78999876778888888889999999865321            11211             112346789999865555


Q ss_pred             EEEEe-CCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEE-eCCCcEEEEEC
Q 004468          231 LLVGG-SDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLS-YSGEHVYLMDV  308 (751)
Q Consensus       231 l~sgs-~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~-s~d~~I~lwdl  308 (751)
                      +++-. ..+.|..+++.... ...             +...     +  -...+.++|+|++..|+.+ +..+.|+.+|+
T Consensus       137 y~td~~~~~~I~r~~~dG~~-~~~-------------~~~~-----~--l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~  195 (318)
T 3sov_A          137 YWTDWGEVPKIERAGMDGSS-RFI-------------IINS-----E--IYWPNGLTLDYEEQKLYWADAKLNFIHKSNL  195 (318)
T ss_dssp             EEEECSSSCEEEEEETTSCS-CEE-------------EECS-----S--CSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             EEEecCCCCEEEEEEcCCCC-eEE-------------EEEC-----C--CCCccEEEEeccCCEEEEEECCCCEEEEEcC
Confidence            55442 35778888775321 100             0000     0  1136899999977766655 45789999999


Q ss_pred             CCC
Q 004468          309 NHA  311 (751)
Q Consensus       309 ~~~  311 (751)
                      +..
T Consensus       196 dG~  198 (318)
T 3sov_A          196 DGT  198 (318)
T ss_dssp             TSC
T ss_pred             CCC
Confidence            763

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=96.90  E-value=0.0044  Score=68.22  Aligned_cols=120  Identities=14%  Similarity=0.097  Sum_probs=91.9

Q ss_pred             chhHHHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCC---------CchhhhhHhHHHHHhhcccccchhhhHHHhhH
Q 004468          361 GKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIG---------PMLRHECLCIRAALLLKRKWKNDAQMAIRDCY  431 (751)
Q Consensus       361 ~~~~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~---------~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~  431 (751)
                      .....+...++..+..++ |..|+..|..+|...+....         ......+|.++|.++++.+   +...|+.+|.
T Consensus       266 ~~a~~~~~~G~~~~~~g~-~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g---~~~~A~~~~~  341 (457)
T 1kt0_A          266 EQAAIVKEKGTVYFKGGK-YMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLR---EYTKAVECCD  341 (457)
T ss_dssp             HHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhc---CHHHHHHHHH
Confidence            444566677777888888 99999999999987665421         1112357889999988765   4567999999


Q ss_pred             HHhcCCCCCcchHHHHHHHHHHhcchHHHHHHHHHhcccCCCChhhhHHHHHH
Q 004468          432 NARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENI  484 (751)
Q Consensus       432 ~a~~~~~~~~~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~~~~~~~~~~  484 (751)
                      +|+.++|.+.+++++++.++..++++.+|..++.......|........+..+
T Consensus       342 ~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~  394 (457)
T 1kt0_A          342 KALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMC  394 (457)
T ss_dssp             HHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHH
T ss_pred             HHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999776544444333

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=96.84  E-value=0.16  Score=59.34  Aligned_cols=187  Identities=12%  Similarity=0.070  Sum_probs=115.2

Q ss_pred             CCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCce
Q 004468           71 DTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRV  150 (751)
Q Consensus        71 Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V  150 (751)
                      ...|+..++........+  .....+..|+|.+.. +.++++-...+.|+.+++.......      .....+......+
T Consensus       403 ~~~Ir~i~l~~~~~~~l~--~~~~~~~gl~~d~~~-~~lY~sD~~~~~I~~~~l~g~~~~~------~~~~vi~~~l~~P  473 (791)
T 3m0c_C          403 RHEVRKMTLDRSEYTSLI--PNLRNVVALDTEVAS-NRIYWSDLSQRMICSTQLDRAHGVS------SYDTVISRDIQAP  473 (791)
T ss_dssp             BSSEEEECTTSCCCEEEE--CSCSSEEEEEEETTT-TEEEEEETTTTEEEEEEC--------------CEEEECSSCSCC
T ss_pred             ccceeEeeccCCcceeee--cCCCceEEEeecccC-CeeEEeeccceeEEEEeccCCCCCc------ceeEEEecCCCCc
Confidence            456777787655443333  335668899999863 5666666667889999887421000      1122333344567


Q ss_pred             eEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcE
Q 004468          151 KKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHL  230 (751)
Q Consensus       151 ~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~  230 (751)
                      ..|++.+.+++++|+-...+.|.+.++....            ..++..             ........|++.|.++.+
T Consensus       474 ~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~------------~~~l~~-------------~~l~~P~gIaVDp~~g~L  528 (791)
T 3m0c_C          474 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVK------------RKTLFR-------------ENGSKPRAIVVDPVHGFM  528 (791)
T ss_dssp             CEEEEETTTTEEEEEETTTTEEEEEETTSSS------------EEEEEE-------------CTTCCEEEEEEETTTTEE
T ss_pred             ceeeeeecCCcEEEEecCCCeEEEEeCCCCe------------EEEEEe-------------CCCCCcceEEEecCCCCE
Confidence            7899998677899998889999999987543            122221             012347789999965555


Q ss_pred             EEEEeCC-CeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEe-CCCcEEEEEC
Q 004468          231 LLVGGSD-AFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSY-SGEHVYLMDV  308 (751)
Q Consensus       231 l~sgs~D-~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s-~d~~I~lwdl  308 (751)
                      +++-... +.|...++.....              ..+....       ....+.|++++.+..|+.+- ..+.|..+++
T Consensus       529 YwtD~g~~~~I~~~~~dG~~~--------------~~lv~~~-------l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~  587 (791)
T 3m0c_C          529 YWTDWGTPAKIKKGGLNGVDI--------------YSLVTEN-------IQWPNGITLDLLSGRLYWVDSKLHSISSIDV  587 (791)
T ss_dssp             EEEECSSSCEEEEEETTSCCE--------------EEEECSS-------CSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             EEecCCCCCeEEEEecCCCce--------------EEEEeCC-------CCCceEEEEecCCCeEEEEeCCCCcEEEEec
Confidence            5554333 6788888753221              1110000       11478999998777766664 4678999999


Q ss_pred             CCCC
Q 004468          309 NHAG  312 (751)
Q Consensus       309 ~~~~  312 (751)
                      ....
T Consensus       588 dG~~  591 (791)
T 3m0c_C          588 NGGN  591 (791)
T ss_dssp             TSCS
T ss_pred             CCCc
Confidence            7744

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=96.82  E-value=0.014  Score=55.62  Aligned_cols=126  Identities=17%  Similarity=0.077  Sum_probs=96.6

Q ss_pred             CcchhHHHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCch----------hhhhHhHHHHHhhcccccchhhhHHH
Q 004468          359 GLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPML----------RHECLCIRAALLLKRKWKNDAQMAIR  428 (751)
Q Consensus       359 ~~~~~~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~----------~~~~~~~ra~~~~~r~w~~d~y~al~  428 (751)
                      .+.....+...+...+..+. |..|+..|.+++...+.......          ...++.++|.+++..+   +.-.|+.
T Consensus        34 ~~~~~~~~~~~g~~~~~~~~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~---~~~~A~~  109 (198)
T 2fbn_A           34 KVQSAFDIKEEGNEFFKKNE-INEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNK---DYPKAID  109 (198)
T ss_dssp             HHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhc---CHHHHHH
Confidence            33445666777788888888 99999999999987665432111          1256778888887653   4567899


Q ss_pred             hhHHHhcCCCCCcchHHHHHHHHHHhcchHHHHHHHHHhcccCCCChhhhHHHHHHHHHH
Q 004468          429 DCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHI  488 (751)
Q Consensus       429 d~~~a~~~~~~~~~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~  488 (751)
                      .+.+++.++|.+.+++++++.++..++++.+|..++.......|........+..+...+
T Consensus       110 ~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  169 (198)
T 2fbn_A          110 HASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKL  169 (198)
T ss_dssp             HHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999988898765554444444443

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=96.80  E-value=0.028  Score=64.78  Aligned_cols=96  Identities=11%  Similarity=0.154  Sum_probs=59.5

Q ss_pred             cccchhhhccccccEEecc-CCCcEEEEEECCCCCEEEEEe-CCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCC
Q 004468           30 LQMHSSLVRRLSQERELEG-HQGCVNAISWNSKGSLLISGS-DDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSD  107 (751)
Q Consensus        30 l~~~~~~i~~~~~~~~L~g-H~~~V~~l~~s~dg~~LaSgs-~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~  107 (751)
                      +..++....+...+..+.. +.....++++..+|++++.|+ .+..+.+||+.+.+....-.......-.++...++  +
T Consensus       221 ~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~d--g  298 (656)
T 1k3i_A          221 TSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSD--G  298 (656)
T ss_dssp             EEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTT--S
T ss_pred             EEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecC--C
Confidence            4444444455545444432 333334577889999999998 45689999988765433211111222245566667  7


Q ss_pred             cEEEEEE-CC-----CcEEEEECCCC
Q 004468          108 ELVVSGA-GD-----AEVRLFNLSRF  127 (751)
Q Consensus       108 ~~l~sgs-~D-----g~V~vwd~~~~  127 (751)
                      ++++.|+ .+     ..+.+||..+.
T Consensus       299 ~iyv~GG~~~~~~~~~~~e~yd~~t~  324 (656)
T 1k3i_A          299 RVFTIGGSWSGGVFEKNGEVYSPSSK  324 (656)
T ss_dssp             CEEEECCCCCSSSCCCCEEEEETTTT
T ss_pred             eEEEEeCcccCCcccccceEeCCCCC
Confidence            8888888 44     56899999764

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=96.79  E-value=0.36  Score=56.74  Aligned_cols=209  Identities=11%  Similarity=0.072  Sum_probs=126.5

Q ss_pred             CCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccc-------CCcceEEEEEecCCCCcEEEEEECCCcEEEE
Q 004468           50 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETG-------HSANVFCTKFVPETSDELVVSGAGDAEVRLF  122 (751)
Q Consensus        50 ~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~-------h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vw  122 (751)
                      ...|.+|...++|.+.+....+ -|.+||..+++..... ..       ....|.++...++  |.+.+. ..+ -|.+|
T Consensus       214 ~~~i~~i~~d~~g~lwigt~~~-Gl~~~~~~~~~~~~~~-~~~~~~~~l~~~~i~~i~~d~~--g~lWig-t~~-Gl~~~  287 (795)
T 4a2l_A          214 TKQIQAILQQSPTRIWVATEGA-GLFLINPKTKEIKNYL-HSPSNPKSISSNYIRSLAMDSQ--NRLWIG-TFN-DLNIY  287 (795)
T ss_dssp             CCCEEEEEEEETTEEEEEEBSS-CEEEEETTTTEEEEEC-CCTTCTTSCSCSBEEEEEECTT--SCEEEE-ESS-CEEEE
T ss_pred             CCeeEEEEEcCCCCEEEEECCC-CeEEEeCCCCeEEEee-cCCCCccccCCCeEEEEEEcCC--CCEEEE-eCC-hhheE
Confidence            4568888888888766654344 4889998876544322 21       2356999988877  665554 444 58888


Q ss_pred             ECCCCCCCCCCCCCCCCceeec--------ccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccc
Q 004468          123 NLSRFSGRGLDDNAITPSALYQ--------CHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECR  194 (751)
Q Consensus       123 d~~~~~~~~~~~~~~~~~~~~~--------~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~  194 (751)
                      |.....           ...+.        -....|.++...+ ++ .||.|+.++-|..|+..+....           
T Consensus       288 ~~~~~~-----------~~~~~~~~~~~~~l~~~~i~~i~~D~-~g-~lWigt~~~Gl~~~~~~~~~~~-----------  343 (795)
T 4a2l_A          288 HEGTDS-----------FASYSSNPVENGSLSQRSVRSIFMDS-QG-GMWLGTYFGGLNYYHPIRNRFK-----------  343 (795)
T ss_dssp             ETTTTE-----------EEEECCCTTSTTSCSSSCEEEEEECT-TS-CEEEEESSSCEEEECGGGGSSE-----------
T ss_pred             cCCCCe-----------EEEEecCCCCCCCCCCCcEEEEEEeC-Cc-CEEEEECCCCeEEeCCCcccce-----------
Confidence            876431           11111        1245789998876 33 4778898888999987654311           


Q ss_pred             eEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCcccccccccccc
Q 004468          195 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSE  274 (751)
Q Consensus       195 ~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (751)
                        .+.....      ...-....|.++...++ + .|.+|..++-|..||..+....              .+.......
T Consensus       344 --~~~~~~~------~~~l~~~~V~~i~~d~~-g-~lWiGt~~~Gl~~~~~~~~~~~--------------~~~~~~~~~  399 (795)
T 4a2l_A          344 --NIRNIPY------KNSLSDNVVSCIVEDKD-K-NLWIGTNDGGLNLYNPITQRFT--------------SYTLQEDES  399 (795)
T ss_dssp             --EECCCTT------SSSCSCSSEEEEEECTT-S-CEEEEESSSCEEEECTTTCCEE--------------EECCC----
T ss_pred             --EEcCCCC------CCCCCCCeeEEEEECCC-C-CEEEEECCCCeEEEcCCCCcEE--------------EEecCCCCc
Confidence              0000000      00002345888888774 3 4666888878999998754311              110000000


Q ss_pred             C-CccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCC
Q 004468          275 H-GRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG  312 (751)
Q Consensus       275 ~-g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~  312 (751)
                      . +-....|.++...++|+.|.+|+.++.|++||..++.
T Consensus       400 ~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~  438 (795)
T 4a2l_A          400 ARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQ  438 (795)
T ss_dssp             --CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCC
T ss_pred             ccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCc
Confidence            0 0111248999999999867788888889999988753

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=96.79  E-value=0.0056  Score=54.03  Aligned_cols=101  Identities=10%  Similarity=0.024  Sum_probs=82.2

Q ss_pred             hHHHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcc
Q 004468          363 CRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFR  442 (751)
Q Consensus       363 ~~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~  442 (751)
                      .......++..+..|+ |..|+..|.++|...+..      ...|.+++.+++..+   +.-.|+.++.+++.++|....
T Consensus         8 A~a~~~lG~~~~~~~~-~~~A~~~y~~Al~~~p~~------~~~~~nlg~~~~~~~---~~~~A~~~~~~al~~~~~~~~   77 (127)
T 4gcn_A            8 AIAEKDLGNAAYKQKD-FEKAHVHYDKAIELDPSN------ITFYNNKAAVYFEEK---KFAECVQFCEKAVEVGRETRA   77 (127)
T ss_dssp             HHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCC------HHHHHhHHHHHHHhh---hHHHHHHHHHHHHHhCcccch
Confidence            3445567778888888 999999999999877654      457889999998764   456799999999999988764


Q ss_pred             -------hHHHHHHHHHHhcchHHHHHHHHHhcccCCC
Q 004468          443 -------AHLYMSEALEQLCKYKEALDFAIAAQCLDPS  473 (751)
Q Consensus       443 -------a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~  473 (751)
                             +++++..++..++.+.+|+.+........|.
T Consensus        78 ~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~  115 (127)
T 4gcn_A           78 DYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD  115 (127)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred             hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence                   6777888888999999999998887776664

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=96.75  E-value=0.008  Score=64.05  Aligned_cols=123  Identities=22%  Similarity=0.211  Sum_probs=94.0

Q ss_pred             hhHHHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCC----------CCchhhhhHhHHHHHhhcccccchhhhHHHhhH
Q 004468          362 KCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGI----------GPMLRHECLCIRAALLLKRKWKNDAQMAIRDCY  431 (751)
Q Consensus       362 ~~~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~----------~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~  431 (751)
                      ....+...++..+..++ |..|+..|..++...+...          .......+|.++|.++++.+   +...|+..+.
T Consensus       222 ~a~~~~~~g~~~~~~g~-~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g---~~~~A~~~~~  297 (370)
T 1ihg_A          222 ISEDLKNIGNTFFKSQN-WEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMS---DWQGAVDSCL  297 (370)
T ss_dssp             HHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhcc---CHHHHHHHHH
Confidence            34556677777888888 9999999999987332210          11122347788888888654   3567899999


Q ss_pred             HHhcCCCCCcchHHHHHHHHHHhcchHHHHHHHHHhcccCCCChhhhHHHHHHHHHH
Q 004468          432 NARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHI  488 (751)
Q Consensus       432 ~a~~~~~~~~~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~  488 (751)
                      +|+.++|.+.+++++++.++..++++.+|+.+++......|........+..+...+
T Consensus       298 ~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~  354 (370)
T 1ihg_A          298 EALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKI  354 (370)
T ss_dssp             HHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999998776555544444443

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=96.71  E-value=0.12  Score=56.24  Aligned_cols=213  Identities=10%  Similarity=0.006  Sum_probs=118.3

Q ss_pred             cEEEEEECCC---CCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECC---Cc-EEEEEC
Q 004468           52 CVNAISWNSK---GSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD---AE-VRLFNL  124 (751)
Q Consensus        52 ~V~~l~~s~d---g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~D---g~-V~vwd~  124 (751)
                      ....|+|+|+   |.++++-.. +.|+.+|..++......  ........++|.++  +.++++....   .. +...+.
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~~-~~I~~id~~~g~v~~~~--~~~~~P~giavd~d--G~lyVad~~~~~~~~gv~~~~~  214 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQR-DAFRHVDFVNQYVDIKT--TNIGQCADVNFTLN--GDMVVVDDQSSDTNTGIYLFTR  214 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECBT-SCEEEEETTTTEEEEEC--CCCSCEEEEEECTT--CCEEEEECCSCTTSEEEEEECG
T ss_pred             CCceEEEccccCCCEEEEEeCC-CCEEEEECCCCEEEEee--cCCCCccEEEECCC--CCEEEEcCCCCcccceEEEEEC
Confidence            4678999985   555544333 89999999877665443  34456899999999  6755554321   12 222222


Q ss_pred             CCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCc
Q 004468          125 SRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGA  204 (751)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~  204 (751)
                      ...   .      .....+. .-.....+++.|.++.++++-..++.|+.+|..++...           ..+....   
T Consensus       215 ~~~---~------~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~-----------~~~~~~~---  270 (433)
T 4hw6_A          215 ASG---F------TERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLT-----------EEEVMMD---  270 (433)
T ss_dssp             GGT---T------CCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEE-----------EEEEECS---
T ss_pred             CCC---e------ecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEE-----------EEEeccC---
Confidence            210   0      1011121 23445678898867788777777888999998755410           0111100   


Q ss_pred             eecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCC--CCc--cccCCCCCCCCccccccccccccCCcccc
Q 004468          205 KRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRML--PPL--TSCQKRMSPPPCVNYFCPMHLSEHGRSSL  280 (751)
Q Consensus       205 ~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  280 (751)
                               ....-..++|+|++..++++-...+.|+.++....  ...  ..+.......    -+..... .. ..-.
T Consensus       271 ---------~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~----g~~dg~~-~~-a~~~  335 (433)
T 4hw6_A          271 ---------TKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSP----GWVDGMG-TG-ARLW  335 (433)
T ss_dssp             ---------CCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCC----CCBCEEG-GG-SBCS
T ss_pred             ---------CCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCC----ccCCCcc-cc-eEEc
Confidence                     01123469999964335566666789999886531  110  0000000000    0000000 00 0011


Q ss_pred             ceEEEEE---------cCCCCEEEEEeCCCcEEEEEC
Q 004468          281 HLTHVTF---------SPNGEEVLLSYSGEHVYLMDV  308 (751)
Q Consensus       281 ~vt~v~f---------spdg~~Ll~~s~d~~I~lwdl  308 (751)
                      ....+++         .++|..+++-...+.|+.++.
T Consensus       336 ~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~  372 (433)
T 4hw6_A          336 GPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP  372 (433)
T ss_dssp             SEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT
T ss_pred             CCccEEEEccccccccCCCCcEEEEECCCCEEEEECC
Confidence            3678999         788887777777889999985

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=96.70  E-value=0.017  Score=51.76  Aligned_cols=110  Identities=13%  Similarity=-0.036  Sum_probs=88.5

Q ss_pred             cCcchhHHHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCC
Q 004468          358 TGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRID  437 (751)
Q Consensus       358 ~~~~~~~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~  437 (751)
                      ..+.....+...+...+..|. |..|+..+..++...+..      ...+.+.+.++...   |+.-.|+....+++.++
T Consensus        13 ~~p~~~~~~~~~a~~~~~~g~-~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~---g~~~~A~~~~~~al~~~   82 (142)
T 2xcb_A           13 LSEDTLEQLYALGFNQYQAGK-WDDAQKIFQALCMLDHYD------ARYFLGLGACRQSL---GLYEQALQSYSYGALMD   82 (142)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHHHHHHcc-HHHHHHHHHHHHHhCCcc------HHHHHHHHHHHHHH---hhHHHHHHHHHHHHhcC
Confidence            345556667777888888888 999999999999877654      34566677776654   34567899999999999


Q ss_pred             CCCcchHHHHHHHHHHhcchHHHHHHHHHhcccCCCChhh
Q 004468          438 SSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVM  477 (751)
Q Consensus       438 ~~~~~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~~~  477 (751)
                      |.++.+++.++.++..+|++.+|..++.......|.....
T Consensus        83 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~  122 (142)
T 2xcb_A           83 INEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAH  122 (142)
T ss_dssp             TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGG
T ss_pred             CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcch
Confidence            9999999999999999999999999999888777765443

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=96.69  E-value=0.046  Score=63.10  Aligned_cols=173  Identities=13%  Similarity=0.123  Sum_probs=89.6

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEEC------CCcEEEEECCCCCCCCC-CC
Q 004468           62 GSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG------DAEVRLFNLSRFSGRGL-DD  134 (751)
Q Consensus        62 g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~------Dg~V~vwd~~~~~~~~~-~~  134 (751)
                      +..|+.++.|+.|..+|..+|+.+..+..........+..+|--.+..++.+..      ++.|..+|..++...-. ..
T Consensus       117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~  196 (668)
T 1kv9_A          117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYT  196 (668)
T ss_dssp             BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEES
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecc
Confidence            457888889999999999999998887432211111111111000234444432      58999999986532110 00


Q ss_pred             CCCCCce------------ee--------cccCCceeEEEEecCCCCEEEEEeCCCc-------------------EEEE
Q 004468          135 NAITPSA------------LY--------QCHTRRVKKLAVEVGNPHVVWSASEDGT-------------------LRQH  175 (751)
Q Consensus       135 ~~~~~~~------------~~--------~~h~~~V~~l~~sp~~~~~l~s~s~Dg~-------------------I~iw  175 (751)
                      ....+..            +.        .++......+++.|. ..+++.++.++.                   |..+
T Consensus       197 ~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~-~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~Al  275 (668)
T 1kv9_A          197 VPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPE-LDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAI  275 (668)
T ss_dssp             SCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETT-TTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEE
T ss_pred             cCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCC-CCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEE
Confidence            0000000            00        011122234678874 456667776653                   7778


Q ss_pred             ecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCc---EEEEEeCCCeEEEEeCCCCCCcc
Q 004468          176 DFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPH---LLLVGGSDAFARLYDRRMLPPLT  252 (751)
Q Consensus       176 Dlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~---~l~sgs~D~~IriwD~~~~~~~~  252 (751)
                      |.++++              ++|........ .+... ....+....+.. +++   .+++++.+|.++++|..+++.+.
T Consensus       276 D~~tG~--------------~~W~~~~~~~~-~wd~~-~~~~~~~~d~~~-~G~~~~~v~~~~~~G~l~~lD~~tG~~l~  338 (668)
T 1kv9_A          276 RPDTGK--------------LAWHYQVTPGD-SWDFT-ATQQITLAELNI-DGKPRKVLMQAPKNGFFYVLDRTNGKLIS  338 (668)
T ss_dssp             CTTTCC--------------EEEEEESSTTC-CSCCC-CCSCEEEEEEEE-TTEEEEEEEECCTTSEEEEEETTTCCEEE
T ss_pred             cCCCCc--------------eeeEeecCCCc-ccccc-CCCCcEEEEecc-CCcEEEEEEEECCCCEEEEEECCCCCEec
Confidence            877775              23332211000 00000 001122222222 233   78899999999999999998663

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=96.69  E-value=0.7  Score=52.58  Aligned_cols=207  Identities=10%  Similarity=0.032  Sum_probs=129.9

Q ss_pred             CcEEEEEECCCCC-EEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCC
Q 004468           51 GCVNAISWNSKGS-LLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSG  129 (751)
Q Consensus        51 ~~V~~l~~s~dg~-~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~  129 (751)
                      ..+..|+|++.+. +..+-..++.|..+++........+ .........+++.+.. ++++++-...+.|.+.++.... 
T Consensus        37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~-~~g~~~P~GlAvD~~~-~~LY~tD~~~~~I~v~~~dG~~-  113 (628)
T 4a0p_A           37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVV-EFGLDYPEGMAVDWLG-KNLYWADTGTNRIEVSKLDGQH-  113 (628)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE-CSSCSCCCEEEEETTT-TEEEEEETTTTEEEEEETTSTT-
T ss_pred             CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEE-eCCCCCcceEEEEeCC-CEEEEEECCCCEEEEEecCCCc-
Confidence            4578999998654 5556667888999998754333333 2223457788888764 5666676677889999987421 


Q ss_pred             CCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEE-eCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecc
Q 004468          130 RGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSA-SEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSL  208 (751)
Q Consensus       130 ~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~-s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  208 (751)
                               ....+...-.....|++.|..+.++++- +..+.|...++.....            .++..         
T Consensus       114 ---------~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~------------~~l~~---------  163 (628)
T 4a0p_A          114 ---------RQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSER------------TTLVP---------  163 (628)
T ss_dssp             ---------CEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC------------EEEEC---------
T ss_pred             ---------EEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCce------------EEEEC---------
Confidence                     1111223345578999999777888775 3356777777754431            12211         


Q ss_pred             cCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEc
Q 004468          209 ADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFS  288 (751)
Q Consensus       209 ~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fs  288 (751)
                           .......+++++.+++++++=...+.|..+|+..... ..             + ...+      . ....+++.
T Consensus       164 -----~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v-------------~-~~~l------~-~P~glav~  216 (628)
T 4a0p_A          164 -----NVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EV-------------I-ADDL------P-HPFGLTQY  216 (628)
T ss_dssp             -----SCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EE-------------E-EECC------S-CEEEEEEE
T ss_pred             -----CCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EE-------------e-eccC------C-CceEEEEE
Confidence                 2245788999996566666666778999999864321 00             0 0000      1 25577776


Q ss_pred             CCCCEEEEEeCCCcEEEEECCCCCcceeee
Q 004468          289 PNGEEVLLSYSGEHVYLMDVNHAGGRAMRY  318 (751)
Q Consensus       289 pdg~~Ll~~s~d~~I~lwdl~~~~~~~~~~  318 (751)
                      . +..+++-...+.|...|..+++......
T Consensus       217 ~-~~ly~tD~~~~~I~~~dk~tg~~~~~l~  245 (628)
T 4a0p_A          217 Q-DYIYWTDWSRRSIERANKTSGQNRTIIQ  245 (628)
T ss_dssp             T-TEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred             C-CEEEEecCCCCEEEEEECCCCCceEEEe
Confidence            5 4555556668999999988766444443

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=96.48  E-value=0.18  Score=59.01  Aligned_cols=115  Identities=14%  Similarity=0.095  Sum_probs=67.9

Q ss_pred             EEEEECCCCCEEEEEeCC-----CcEEEEeCCCCeE--EEEecccCCcceEEEEEecCCCCcEEEEEEC---CCcEEEEE
Q 004468           54 NAISWNSKGSLLISGSDD-----THINVWSYSSRKL--LHSIETGHSANVFCTKFVPETSDELVVSGAG---DAEVRLFN  123 (751)
Q Consensus        54 ~~l~~s~dg~~LaSgs~D-----g~I~IWd~~~~~~--~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~---Dg~V~vwd  123 (751)
                      ..+.|+|||+.|+....|     ..|.++++.++..  ...+...+......+.|+|+  |++|+..+.   ...|.++|
T Consensus       224 ~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpD--g~~l~~~~~~~~~~~l~~~d  301 (751)
T 2xe4_A          224 GEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAAD--TNTLCIGSQSPETAEVHLLD  301 (751)
T ss_dssp             SCCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTT--SSEEEEEEECSSCEEEEEEE
T ss_pred             eeEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCC--CCEEEEEecCCCCceEEEEE
Confidence            368899999988877765     3588888876532  22221123345678899999  787775542   34678888


Q ss_pred             CCCCCCCCCCCCCCCC--ceeecccCCceeEEEEecCCCCEEEEEeCC--C--cEEEEecCC
Q 004468          124 LSRFSGRGLDDNAITP--SALYQCHTRRVKKLAVEVGNPHVVWSASED--G--TLRQHDFRQ  179 (751)
Q Consensus       124 ~~~~~~~~~~~~~~~~--~~~~~~h~~~V~~l~~sp~~~~~l~s~s~D--g--~I~iwDlr~  179 (751)
                      +..+.+        ..  ............++.|+. ++.+++....+  +  .|..+|+.+
T Consensus       302 ~~~~~~--------~~~~~~l~~~~~~~~~s~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~  354 (751)
T 2xe4_A          302 LRKGNA--------HNTLEIVRPREKGVRYDVQMHG-TSHLVILTNEGGAVNHKLLIAPRGQ  354 (751)
T ss_dssp             SSSCTT--------CCCEEESSCCCTTCCEEEEEET-TTEEEEEECTTTCTTCEEEEEETTS
T ss_pred             CCCCCC--------CceeEEeecCCCCceEEEeeee-CCEEEEEeCCCCCCCcEEEEEcCCC
Confidence            875321        11  122233445556666654 55566565554  3  455556543

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=96.46  E-value=0.089  Score=51.88  Aligned_cols=143  Identities=11%  Similarity=0.098  Sum_probs=85.6

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCce
Q 004468           62 GSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSA  141 (751)
Q Consensus        62 g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~  141 (751)
                      +++.+..-.++.+.+||..+.+.+.++..+..+  ..+  .++  +..|+.+..++.|.++|..+.          +.+.
T Consensus        75 ~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~G--wgl--t~d--g~~L~vSdgs~~l~~iDp~t~----------~~~~  138 (243)
T 3mbr_X           75 DRLIQLTWRNHEGFVYDLATLTPRARFRYPGEG--WAL--TSD--DSHLYMSDGTAVIRKLDPDTL----------QQVG  138 (243)
T ss_dssp             TEEEEEESSSSEEEEEETTTTEEEEEEECSSCC--CEE--EEC--SSCEEEECSSSEEEEECTTTC----------CEEE
T ss_pred             CEEEEEEeeCCEEEEEECCcCcEEEEEeCCCCc--eEE--eeC--CCEEEEECCCCeEEEEeCCCC----------eEEE
Confidence            445555567899999999999999998443222  333  355  445555556889999999874          2233


Q ss_pred             eecc--cC---CceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCcc
Q 004468          142 LYQC--HT---RRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTL  216 (751)
Q Consensus       142 ~~~~--h~---~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  216 (751)
                      .+.-  +.   ..++.+.|.  ++.+++..-.+..|.+.|.++++..            -.+++..-.............
T Consensus       139 ~I~V~~~g~~~~~lNeLe~~--~G~lyanvw~s~~I~vIDp~tG~V~------------~~idl~~l~~~~~~~~~~~~~  204 (243)
T 3mbr_X          139 SIKVTAGGRPLDNLNELEWV--NGELLANVWLTSRIARIDPASGKVV------------AWIDLQALVPDADALTDSTND  204 (243)
T ss_dssp             EEECEETTEECCCEEEEEEE--TTEEEEEETTTTEEEEECTTTCBEE------------EEEECGGGSTTTTSCCCTTSS
T ss_pred             EEEEccCCcccccceeeEEe--CCEEEEEECCCCeEEEEECCCCCEE------------EEEECCcCccccccccCCcCC
Confidence            3322  22   244566765  5677766657889999999998732            122221100000000011234


Q ss_pred             ceEEEEEeCCCCcEEEEE
Q 004468          217 SLKSCDISSTRPHLLLVG  234 (751)
Q Consensus       217 ~v~~i~~sp~~~~~l~sg  234 (751)
                      -.+.|+++|...+++++|
T Consensus       205 vlNGIA~d~~~~~lfVTG  222 (243)
T 3mbr_X          205 VLNGIAFDAEHDRLFVTG  222 (243)
T ss_dssp             CEEEEEEETTTTEEEEEE
T ss_pred             ceEEEEEcCCCCEEEEEC
Confidence            678999999765666665

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=96.43  E-value=0.29  Score=55.68  Aligned_cols=207  Identities=9%  Similarity=0.038  Sum_probs=122.8

Q ss_pred             CCcEEEEEECCCCCEEE-EEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCC
Q 004468           50 QGCVNAISWNSKGSLLI-SGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFS  128 (751)
Q Consensus        50 ~~~V~~l~~s~dg~~La-Sgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~  128 (751)
                      -+.+..|+|++.+..|. +=...+.|..+++........+....-.....+++.+.. ++++++-...+.|.+.++....
T Consensus        39 ~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~-~~ly~~d~~~~~I~v~~~dG~~  117 (619)
T 3s94_A           39 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLG-EKLYWTDSETNRIEVSNLDGSL  117 (619)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTT-TEEEEEETTTTEEEEEETTSCS
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecC-CEEEEEeCCCCEEEEEECCCCC
Confidence            34577999998655554 444567888888875432222213333568899999863 5666676778899999987421


Q ss_pred             CCCCCCCCCCCceee-cccCCceeEEEEecCCCCEEEEEe-CCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCcee
Q 004468          129 GRGLDDNAITPSALY-QCHTRRVKKLAVEVGNPHVVWSAS-EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKR  206 (751)
Q Consensus       129 ~~~~~~~~~~~~~~~-~~h~~~V~~l~~sp~~~~~l~s~s-~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~  206 (751)
                                 ..++ ...-.....|++.|.++.++++-- ..+.|...++.....            ..+..       
T Consensus       118 -----------~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~------------~~l~~-------  167 (619)
T 3s94_A          118 -----------RKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR------------FIIIN-------  167 (619)
T ss_dssp             -----------CEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSC------------EEEEC-------
T ss_pred             -----------EEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCce------------EEEEe-------
Confidence                       2222 234455788999997777887753 345666666653321            11111       


Q ss_pred             cccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEE
Q 004468          207 SLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVT  286 (751)
Q Consensus       207 ~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~  286 (751)
                            ......+.+++++.+++++++=...+.|..+|+......              .+....   ..    ....|+
T Consensus       168 ------~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~--------------~~~~~~---~~----~P~gi~  220 (619)
T 3s94_A          168 ------SEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQ--------------AVVKGS---LP----HPFALT  220 (619)
T ss_dssp             ------SSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC------------------------------CCCEE
T ss_pred             ------CCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccE--------------EEEeCC---CC----CceEEE
Confidence                  012456889999976666666666778888887532111              000000   01    134567


Q ss_pred             EcCCCCEEEEEeCCCcEEEEECCCCCcce
Q 004468          287 FSPNGEEVLLSYSGEHVYLMDVNHAGGRA  315 (751)
Q Consensus       287 fspdg~~Ll~~s~d~~I~lwdl~~~~~~~  315 (751)
                      +..+ ..+++-...+.|...|..+++...
T Consensus       221 ~~~~-~ly~td~~~~~V~~~d~~tg~~~~  248 (619)
T 3s94_A          221 LFED-ILYWTDWSTHSILACNKYTGEGLR  248 (619)
T ss_dssp             ESSS-EEEEECTTTCSEEEEESSSCCCCE
T ss_pred             EeCC-EEEEecCCCCEEEEEECCCCcccE
Confidence            7665 444455568899999998865443

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=96.41  E-value=0.74  Score=52.38  Aligned_cols=186  Identities=7%  Similarity=0.006  Sum_probs=117.7

Q ss_pred             CCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCc
Q 004468           70 DDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRR  149 (751)
Q Consensus        70 ~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~  149 (751)
                      ....|+..++.+......+....-..+..|+|.+.. +.++++-..++.|..+++....          ....+......
T Consensus        13 ~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~-~~lywtD~~~~~I~r~~~~g~~----------~~~v~~~g~~~   81 (628)
T 4a0p_A           13 RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTD-NRIYWTDISLKTISRAFMNGSA----------LEHVVEFGLDY   81 (628)
T ss_dssp             ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTT-TEEEEEETTTTEEEEEETTSCS----------CEEEECSSCSC
T ss_pred             eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCC-CEEEEEECCCCeEEEEECCCCC----------cEEEEeCCCCC
Confidence            345788889876544333322334678999999974 5566666678899999887421          12222222345


Q ss_pred             eeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCc
Q 004468          150 VKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPH  229 (751)
Q Consensus       150 V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~  229 (751)
                      ...|++.+.+++++++-...+.|.+.++.....            .++..             ........|++.|.++.
T Consensus        82 P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~------------~~l~~-------------~~l~~P~~iavdp~~G~  136 (628)
T 4a0p_A           82 PEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHR------------QVLVW-------------KDLDSPRALALDPAEGF  136 (628)
T ss_dssp             CCEEEEETTTTEEEEEETTTTEEEEEETTSTTC------------EEEEC-------------SSCCCEEEEEEETTTTE
T ss_pred             cceEEEEeCCCEEEEEECCCCEEEEEecCCCcE------------EEEEe-------------CCCCCcccEEEccCCCe
Confidence            778999876778888888889999999865431            12221             01234678999996565


Q ss_pred             EEEEE-eCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEe-CCCcEEEEE
Q 004468          230 LLLVG-GSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSY-SGEHVYLMD  307 (751)
Q Consensus       230 ~l~sg-s~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s-~d~~I~lwd  307 (751)
                      ++.+- +..+.|...++......              .+..        .....+.|+++++++.|+.+- ..+.|..+|
T Consensus       137 lY~tD~g~~~~I~r~~~dG~~~~--------------~l~~--------~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d  194 (628)
T 4a0p_A          137 MYWTEWGGKPKIDRAAMDGSERT--------------TLVP--------NVGRANGLTIDYAKRRLYWTDLDTNLIESSN  194 (628)
T ss_dssp             EEEEECSSSCEEEEEETTSCSCE--------------EEEC--------SCSSEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             EEEeCCCCCCEEEEEeCCCCceE--------------EEEC--------CCCCcceEEEccccCEEEEEECCCCEEEEEc
Confidence            55554 22567777776532210              0000        011478999999877766654 578999999


Q ss_pred             CCCCCc
Q 004468          308 VNHAGG  313 (751)
Q Consensus       308 l~~~~~  313 (751)
                      +.....
T Consensus       195 ~dG~~~  200 (628)
T 4a0p_A          195 MLGLNR  200 (628)
T ss_dssp             TTSCSC
T ss_pred             CCCCce
Confidence            987443

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=96.37  E-value=1.1  Score=52.58  Aligned_cols=207  Identities=10%  Similarity=0.062  Sum_probs=125.1

Q ss_pred             CCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecc------cCCcceEEEEEecCCCCcEEEEEECCCcEEEEE
Q 004468           50 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIET------GHSANVFCTKFVPETSDELVVSGAGDAEVRLFN  123 (751)
Q Consensus        50 ~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~------~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd  123 (751)
                      ...|.++...++|.+.+.. .+ -|.+||..++........      -....|.++...++  |. |-.|..++-|..|+
T Consensus       262 ~~~i~~i~~d~~g~lWigt-~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~--g~-lWigt~~~Gl~~~~  336 (795)
T 4a2l_A          262 SNYIRSLAMDSQNRLWIGT-FN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQ--GG-MWLGTYFGGLNYYH  336 (795)
T ss_dssp             CSBEEEEEECTTSCEEEEE-SS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTT--SC-EEEEESSSCEEEEC
T ss_pred             CCeEEEEEEcCCCCEEEEe-CC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCC--cC-EEEEECCCCeEEeC
Confidence            3569999999999866544 44 589999887764432211      12357999988877  55 44566667788888


Q ss_pred             CCCCCCCCCCCCCCCCceeec-------ccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceE
Q 004468          124 LSRFSGRGLDDNAITPSALYQ-------CHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNI  196 (751)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~-------~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~  196 (751)
                      .....           ...+.       -....|.++...+ ++ .||.|+.++-|..||..++...             
T Consensus       337 ~~~~~-----------~~~~~~~~~~~~l~~~~V~~i~~d~-~g-~lWiGt~~~Gl~~~~~~~~~~~-------------  390 (795)
T 4a2l_A          337 PIRNR-----------FKNIRNIPYKNSLSDNVVSCIVEDK-DK-NLWIGTNDGGLNLYNPITQRFT-------------  390 (795)
T ss_dssp             GGGGS-----------SEEECCCTTSSSCSCSSEEEEEECT-TS-CEEEEESSSCEEEECTTTCCEE-------------
T ss_pred             CCccc-----------ceEEcCCCCCCCCCCCeeEEEEECC-CC-CEEEEECCCCeEEEcCCCCcEE-------------
Confidence            76421           11111       1245688888766 33 4778998888999998765311             


Q ss_pred             EEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCC
Q 004468          197 LLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHG  276 (751)
Q Consensus       197 l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  276 (751)
                      .+........    .......|.++...++ +++|.+|+.++-|.+||..+.+...              +....   ..
T Consensus       391 ~~~~~~~~~~----~~l~~~~v~~i~~d~~-g~~lWigt~~~Gl~~~d~~~~~~~~--------------~~~~~---~~  448 (795)
T 4a2l_A          391 SYTLQEDESA----RGIGSNNIKAVYVDEK-KSLVYIGTHAGGLSILHRNSGQVEN--------------FNQRN---SQ  448 (795)
T ss_dssp             EECCC----------CCSCSCEEEEEEETT-TTEEEEEETTTEEEEEETTTCCEEE--------------ECTTT---SC
T ss_pred             EEecCCCCcc----cCCCCccEEEEEEcCC-CCEEEEEeCcCceeEEeCCCCcEEE--------------eecCC---CC
Confidence            0000000000    0001346888888874 5657778887889999987654211              10000   00


Q ss_pred             ccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 004468          277 RSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (751)
Q Consensus       277 ~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~  311 (751)
                      .....|.++...++|+..+. +. +.|++||..++
T Consensus       449 l~~~~v~~i~~d~~g~lwig-t~-~Gl~~~~~~~~  481 (795)
T 4a2l_A          449 LVNENVYAILPDGEGNLWLG-TL-SALVRFNPEQR  481 (795)
T ss_dssp             CSCSCEEEEEECSSSCEEEE-ES-SCEEEEETTTT
T ss_pred             cCCCeeEEEEECCCCCEEEE-ec-CceeEEeCCCC
Confidence            11124899999998885544 44 56999998774

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=96.36  E-value=0.019  Score=60.09  Aligned_cols=115  Identities=19%  Similarity=0.103  Sum_probs=92.0

Q ss_pred             cchhHHHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCC---------CchhhhhHhHHHHHhhcccccchhhhHHHhh
Q 004468          360 LGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIG---------PMLRHECLCIRAALLLKRKWKNDAQMAIRDC  430 (751)
Q Consensus       360 ~~~~~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~---------~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~  430 (751)
                      +.....+...+...+..++ |..|+..|..++...+....         ......+|.++|.++++.+   +...|+..+
T Consensus       144 p~~a~~~~~~g~~~~~~g~-~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g---~~~~A~~~~  219 (336)
T 1p5q_A          144 LEQSTIVKERGTVYFKEGK-YKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQ---AFSAAIESC  219 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcC---CHHHHHHHH
Confidence            3445556667777777788 99999999999987765421         0111357788888888754   456789999


Q ss_pred             HHHhcCCCCCcchHHHHHHHHHHhcchHHHHHHHHHhcccCCCChhhh
Q 004468          431 YNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMA  478 (751)
Q Consensus       431 ~~a~~~~~~~~~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~~~~  478 (751)
                      .+++.++|.+.+++++++.++..++++.+|..+++......|......
T Consensus       220 ~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~  267 (336)
T 1p5q_A          220 NKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAK  267 (336)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHH
T ss_pred             HHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHH
Confidence            999999999999999999999999999999999999999999876443

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=96.35  E-value=0.006  Score=64.13  Aligned_cols=114  Identities=18%  Similarity=0.106  Sum_probs=84.0

Q ss_pred             cchhHHHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCC-----------CchhhhhHhHHHHHhhcccccchhhhHHH
Q 004468          360 LGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIG-----------PMLRHECLCIRAALLLKRKWKNDAQMAIR  428 (751)
Q Consensus       360 ~~~~~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~-----------~~~~~~~~~~ra~~~~~r~w~~d~y~al~  428 (751)
                      +.....+...++..+..+. |..|+..|..++...+....           ..+...+|.++|.++++.+-   ...|+.
T Consensus       176 ~~~a~~~~~~g~~~~~~g~-~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~---~~~A~~  251 (338)
T 2if4_A          176 IGAADRRKMDGNSLFKEEK-LEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKR---YDEAIG  251 (338)
T ss_dssp             HHHHHHHHHHHHHTCSSSC-CHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTC---CHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCC---HHHHHH
Confidence            3445666677777777777 88999999999876543210           00111377889998887653   457899


Q ss_pred             hhHHHhcCCCCCcchHHHHHHHHHHhcchHHHHHHHHHhcccCCCChhh
Q 004468          429 DCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVM  477 (751)
Q Consensus       429 d~~~a~~~~~~~~~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~~~  477 (751)
                      .|.+++.++|.+.+++++++.++..++++.+|..++.......|.....
T Consensus       252 ~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a  300 (338)
T 2if4_A          252 HCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAI  300 (338)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHH
Confidence            9999999999999999999999999999999999999999888875543

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=96.28  E-value=0.21  Score=56.37  Aligned_cols=53  Identities=8%  Similarity=-0.053  Sum_probs=37.0

Q ss_pred             CcEEEEeCCCCeEEEEeccc-CC--------cceEEEEEe-cCCCC---cEEEEEECCCcEEEEECCCC
Q 004468           72 THINVWSYSSRKLLHSIETG-HS--------ANVFCTKFV-PETSD---ELVVSGAGDAEVRLFNLSRF  127 (751)
Q Consensus        72 g~I~IWd~~~~~~~~~l~~~-h~--------~~V~~v~fs-p~s~~---~~l~sgs~Dg~V~vwd~~~~  127 (751)
                      +.|.-+|..+|+.+..+... |.        .++. +... .+  |   ..|+.++.+|.++++|..++
T Consensus       291 ~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~--G~~~~~v~~~~~~G~l~~lD~~tG  356 (582)
T 1flg_A          291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKD--GKIVKATAHADRNGFFYVVDRSNG  356 (582)
T ss_dssp             SEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSS--SCEEEEEEEECTTSEEEEEETTTC
T ss_pred             ceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCC--CCEEEEEEEECCCceEEEEECCCC
Confidence            58999999999999887443 32        1121 1221 23  5   37888999999999998864

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=96.25  E-value=0.019  Score=50.07  Aligned_cols=98  Identities=15%  Similarity=0.036  Sum_probs=76.1

Q ss_pred             HHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcchHHH
Q 004468          367 VEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLY  446 (751)
Q Consensus       367 ~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~a~~~  446 (751)
                      ...+...+..|. +..|+..+..++...+..      ...+...+.++...   |+.-.|+....+++.++|.+..+++.
T Consensus        21 ~~~g~~~~~~g~-~~~A~~~~~~al~~~P~~------~~a~~~lg~~~~~~---g~~~~A~~~~~~al~l~P~~~~~~~~   90 (121)
T 1hxi_A           21 MEEGLSMLKLAN-LAEAALAFEAVCQKEPER------EEAWRSLGLTQAEN---EKDGLAIIALNHARMLDPKDIAVHAA   90 (121)
T ss_dssp             HHHHHHHHHTTC-HHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHcCC-HHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            445666677777 889999999999877665      34556666666654   44567888899999999999999999


Q ss_pred             HHHHHHHhcchHHHHHHHHHhcccCCCC
Q 004468          447 MSEALEQLCKYKEALDFAIAAQCLDPSN  474 (751)
Q Consensus       447 ~~~~l~~l~~~~~a~~~~~~~~~~~p~~  474 (751)
                      ++.++..+|++.+|..+++......|.+
T Consensus        91 la~~~~~~g~~~~A~~~~~~al~~~P~~  118 (121)
T 1hxi_A           91 LAVSHTNEHNANAALASLRAWLLSQPQY  118 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCcCC
Confidence            9999999999999999999888877754

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=96.24  E-value=0.24  Score=55.86  Aligned_cols=25  Identities=12%  Similarity=0.031  Sum_probs=20.5

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCCcc
Q 004468          290 NGEEVLLSYSGEHVYLMDVNHAGGR  314 (751)
Q Consensus       290 dg~~Ll~~s~d~~I~lwdl~~~~~~  314 (751)
                      .+..|++++.|+.|+.||..+++..
T Consensus       474 ~gg~v~~g~~dg~l~a~D~~tG~~l  498 (571)
T 2ad6_A          474 KGGLVWYATLDGYLKALDNKDGKEL  498 (571)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEE
T ss_pred             CCCEEEEEcCCCeEEEEECCCCCEE
Confidence            4667888999999999999996533

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=96.06  E-value=0.05  Score=47.68  Aligned_cols=102  Identities=20%  Similarity=0.209  Sum_probs=83.6

Q ss_pred             hhHHHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCc
Q 004468          362 KCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSF  441 (751)
Q Consensus       362 ~~~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~  441 (751)
                      ....+...+...+..+. |..|+..|..++...+..      ...+.+++..++..+   +.-.|+..+..++.++|.+.
T Consensus         8 ~~~~~~~~g~~~~~~~~-~~~A~~~~~~al~~~~~~------~~~~~~l~~~~~~~~---~~~~A~~~~~~al~~~p~~~   77 (137)
T 3q49_B            8 SAQELKEQGNRLFVGRK-YPEAAACYGRAITRNPLV------AVYYTNRALCYLKMQ---QPEQALADCRRALELDGQSV   77 (137)
T ss_dssp             CHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCH
T ss_pred             cHHHHHHHHHHHHHhCc-HHHHHHHHHHHHhhCcCc------HHHHHHHHHHHHHhc---CHHHHHHHHHHHHHhCchhH
Confidence            34556667777778888 999999999999877554      346778888877654   34568888999999999999


Q ss_pred             chHHHHHHHHHHhcchHHHHHHHHHhcccCCC
Q 004468          442 RAHLYMSEALEQLCKYKEALDFAIAAQCLDPS  473 (751)
Q Consensus       442 ~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~  473 (751)
                      .+++.++.++..++++.+|..++.......|.
T Consensus        78 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~  109 (137)
T 3q49_B           78 KAHFFLGQCQLEMESYDEAIANLQRAYSLAKE  109 (137)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence            99999999999999999999999888776665

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.06  E-value=0.051  Score=48.06  Aligned_cols=112  Identities=22%  Similarity=0.148  Sum_probs=89.1

Q ss_pred             CcchhHHHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCC
Q 004468          359 GLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDS  438 (751)
Q Consensus       359 ~~~~~~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~  438 (751)
                      .+.....+...+...+..+. |..++..|..++...+..   ......+.+++..+...+   +.-.|+..+.+++.++|
T Consensus        24 ~~~~~~~~~~~a~~~~~~~~-~~~A~~~~~~a~~~~~~~---~~~~~~~~~~a~~~~~~~---~~~~A~~~~~~~~~~~~   96 (148)
T 2dba_A           24 GASSVEQLRKEGNELFKCGD-YGGALAAYTQALGLDATP---QDQAVLHRNRAACHLKLE---DYDKAETEASKAIEKDG   96 (148)
T ss_dssp             TCCCHHHHHHHHHHHHTTTC-HHHHHHHHHHHHTSCCCH---HHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHTS
T ss_pred             chHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHcccc---hHHHHHHHHHHHHHHHHc---cHHHHHHHHHHHHhhCc
Confidence            34556667778888888888 999999999999865431   112356677787777654   35568888999999999


Q ss_pred             CCcchHHHHHHHHHHhcchHHHHHHHHHhcccCCCChhh
Q 004468          439 SSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVM  477 (751)
Q Consensus       439 ~~~~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~~~  477 (751)
                      .+..+++.++.++..++++.+|..++..+....|.....
T Consensus        97 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~  135 (148)
T 2dba_A           97 GDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVF  135 (148)
T ss_dssp             CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHH
T ss_pred             cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH
Confidence            999999999999999999999999999998888876543

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=96.05  E-value=0.093  Score=43.94  Aligned_cols=105  Identities=19%  Similarity=0.142  Sum_probs=83.1

Q ss_pred             hHHHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcc
Q 004468          363 CRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFR  442 (751)
Q Consensus       363 ~~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~  442 (751)
                      ...+...+......+. +..++..+..++...+..      ...+.+.+..+...   ++.-.|+..+.+++.++|.+..
T Consensus         4 ~~~~~~~~~~~~~~~~-~~~A~~~~~~~~~~~~~~------~~~~~~~a~~~~~~---~~~~~A~~~~~~~~~~~~~~~~   73 (118)
T 1elw_A            4 VNELKEKGNKALSVGN-IDDALQCYSEAIKLDPHN------HVLYSNRSAAYAKK---GDYQKAYEDGCKTVDLKPDWGK   73 (118)
T ss_dssp             HHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHH---TCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHHHHHHccc-HHHHHHHHHHHHHHCCCc------HHHHHHHHHHHHhh---ccHHHHHHHHHHHHHhCcccHH
Confidence            3445556666777777 889999999999876543      34556667666654   3456788889999999999999


Q ss_pred             hHHHHHHHHHHhcchHHHHHHHHHhcccCCCChhh
Q 004468          443 AHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVM  477 (751)
Q Consensus       443 a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~~~  477 (751)
                      +++.++.++..++++.+|..++.......|.....
T Consensus        74 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  108 (118)
T 1elw_A           74 GYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQL  108 (118)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHH
Confidence            99999999999999999999999998888876543

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=96.04  E-value=0.021  Score=58.08  Aligned_cols=102  Identities=20%  Similarity=0.211  Sum_probs=85.4

Q ss_pred             hHHHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcc
Q 004468          363 CRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFR  442 (751)
Q Consensus       363 ~~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~  442 (751)
                      ...+...+...+..|. |..|+..|..++...+..      ...+.++|.++...+   +.-.|+.++.+++.++|.+.+
T Consensus         4 a~~~~~~g~~~~~~g~-~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~---~~~~A~~~~~~al~~~p~~~~   73 (281)
T 2c2l_A            4 AQELKEQGNRLFVGRK-YPEAAACYGRAITRNPLV------AVYYTNRALCYLKMQ---QPEQALADCRRALELDGQSVK   73 (281)
T ss_dssp             HHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCSCC------HHHHHHHHHHHHHTT---CHHHHHHHHHHHTTSCTTCHH
T ss_pred             HHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCcc------HHHHHHHHHHHHHhc---CHHHHHHHHHHHHHhCCCCHH
Confidence            3455667777778888 999999999999977654      457889999988755   456789999999999999999


Q ss_pred             hHHHHHHHHHHhcchHHHHHHHHHhcccCCCC
Q 004468          443 AHLYMSEALEQLCKYKEALDFAIAAQCLDPSN  474 (751)
Q Consensus       443 a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~  474 (751)
                      +++.++.++..+|++.+|...+.......|..
T Consensus        74 ~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~  105 (281)
T 2c2l_A           74 AHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ  105 (281)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence            99999999999999999999988877666643

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=96.04  E-value=0.51  Score=51.11  Aligned_cols=238  Identities=7%  Similarity=0.009  Sum_probs=119.3

Q ss_pred             EeccCCCcEEEEEECCCCCEEEEEeCC---Cc-EEEEeCCCCeE-EEEecccCCcceEEEEEecCCCCcEEEEEECCCcE
Q 004468           45 ELEGHQGCVNAISWNSKGSLLISGSDD---TH-INVWSYSSRKL-LHSIETGHSANVFCTKFVPETSDELVVSGAGDAEV  119 (751)
Q Consensus        45 ~L~gH~~~V~~l~~s~dg~~LaSgs~D---g~-I~IWd~~~~~~-~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V  119 (751)
                      ++-+.....+.|+|+++|+++++....   .. +...+...+.. ...+  ..-.....+++.|.. +.++++-..++.|
T Consensus       176 ~~~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~~~~~~--~~~~~P~giavd~~~-G~lyv~d~~~~~V  252 (433)
T 4hw6_A          176 IKTTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFTERLSL--CNARGAKTCAVHPQN-GKIYYTRYHHAMI  252 (433)
T ss_dssp             EECCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTCCEEEE--EECSSBCCCEECTTT-CCEEECBTTCSEE
T ss_pred             EeecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCeeccccc--cccCCCCEEEEeCCC-CeEEEEECCCCEE
Confidence            333344568999999999955555421   12 33333221111 0111  122345678889842 6777776677889


Q ss_pred             EEEECCCCCCCCCCCCCCCCceee-c-ccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEE
Q 004468          120 RLFNLSRFSGRGLDDNAITPSALY-Q-CHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNIL  197 (751)
Q Consensus       120 ~vwd~~~~~~~~~~~~~~~~~~~~-~-~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l  197 (751)
                      +.+|...+.          ....+ . +....-..|+|+|++..++++-...+.|+.+|+......       ......+
T Consensus       253 ~~~d~~~g~----------~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~-------~~~~~~~  315 (433)
T 4hw6_A          253 SSYDPATGT----------LTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGK-------LAVPYIV  315 (433)
T ss_dssp             EEECTTTCC----------EEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCC-------BCCCEEE
T ss_pred             EEEECCCCe----------EEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcc-------cCcEEEE
Confidence            999887431          10111 1 112223469999955447777777889999887632110       0000111


Q ss_pred             Eec-c-cCceecccCCCCCccceEEEEE---------eCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCcccc
Q 004468          198 LDL-R-CGAKRSLADPPKQTLSLKSCDI---------SSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNY  266 (751)
Q Consensus       198 ~~~-~-~~~~~~~~~~~~~~~~v~~i~~---------sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~  266 (751)
                      ... . .+..... ...........+++         .+ ++.++++-...+.|+.++. .+. +..+.....  .+..-
T Consensus       316 ag~~g~~g~~dg~-~~~a~~~~P~giav~~n~~y~~dd~-~g~lyvaD~~n~~I~~~~~-~G~-v~t~~G~g~--~~~~G  389 (433)
T 4hw6_A          316 CGQHSSPGWVDGM-GTGARLWGPNQGIFVKNEAYAGEED-EYDFYFCDRDSHTVRVLTP-EGR-VTTYAGRGN--SREWG  389 (433)
T ss_dssp             EECTTCCCCBCEE-GGGSBCSSEEEEEEEECGGGTTSSC-CEEEEEEETTTTEEEEECT-TSE-EEEEECCCT--TCSSC
T ss_pred             EecCCCCccCCCc-ccceEEcCCccEEEEccccccccCC-CCcEEEEECCCCEEEEECC-CCC-EEEEEeCCC--CCccc
Confidence            111 0 0000000 00001224567888         44 4566666667788999985 232 111111100  00000


Q ss_pred             ccccccccCCccccceEEEEEc-CCCCEEEEEeCCCcEEEEECC
Q 004468          267 FCPMHLSEHGRSSLHLTHVTFS-PNGEEVLLSYSGEHVYLMDVN  309 (751)
Q Consensus       267 ~~~~~~~~~g~~~~~vt~v~fs-pdg~~Ll~~s~d~~I~lwdl~  309 (751)
                      +.......... -.....|+++ ++|..+++-..++.|+.++++
T Consensus       390 ~~dG~~~~~~~-~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  432 (433)
T 4hw6_A          390 YVDGELRSQAL-FNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE  432 (433)
T ss_dssp             CBCEETTTTCB-CSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             cCCCccccccE-eCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence            00000000000 1137889999 677776676778899988864

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=95.93  E-value=0.46  Score=48.95  Aligned_cols=168  Identities=10%  Similarity=0.073  Sum_probs=104.7

Q ss_pred             eccCCCcEEEEEECCCCCEEEEEe-CCCcEEEEeCCCCeEEEEeccc----C--CcceEEEEE---ecCCCCcEEEEEE-
Q 004468           46 LEGHQGCVNAISWNSKGSLLISGS-DDTHINVWSYSSRKLLHSIETG----H--SANVFCTKF---VPETSDELVVSGA-  114 (751)
Q Consensus        46 L~gH~~~V~~l~~s~dg~~LaSgs-~Dg~I~IWd~~~~~~~~~l~~~----h--~~~V~~v~f---sp~s~~~~l~sgs-  114 (751)
                      +.+..---.+++|.+....|..++ ..++|..|+...+........+    .  ...+..|.|   -|.  +.++++.. 
T Consensus         8 ~~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~--grL~vv~~~   85 (334)
T 2p9w_A            8 VKVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNS--KRLFAVMKN   85 (334)
T ss_dssp             ECCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSC--CEEEEEEEE
T ss_pred             ecCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCC--CcEEEEEcc
Confidence            334444455789987555555554 7999999999865433332122    1  124689999   477  67777543 


Q ss_pred             ------------CCCcEEEEECC---CCCCCCCCCCCCCCcee--eccc-----------CCceeEEEEecCCCCEEEEE
Q 004468          115 ------------GDAEVRLFNLS---RFSGRGLDDNAITPSAL--YQCH-----------TRRVKKLAVEVGNPHVVWSA  166 (751)
Q Consensus       115 ------------~Dg~V~vwd~~---~~~~~~~~~~~~~~~~~--~~~h-----------~~~V~~l~~sp~~~~~l~s~  166 (751)
                                  .+..|..+|+.   ++.          .+..  +...           ......++..+ +++..+++
T Consensus        86 ~~af~~~g~~~~g~~~v~~~Dl~~~~tg~----------~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~-~GnaYVt~  154 (334)
T 2p9w_A           86 AKSFNFADQSSHGASSFHSFNLPLSENSK----------PVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDR-DGNSYVAF  154 (334)
T ss_dssp             TTTTCTTSCCSSSCCEEEEEESSCCTTCC----------CSEEEESHHHHHHHHHHHSSCCEEEEEEEECT-TSCEEEEE
T ss_pred             cccccccccccCCCCEEEEEcCCcCCCCC----------EEEEecCccccccccccccccccCCceeEECC-CCCEEEeC
Confidence                        26789999998   432          1221  1111           12478899998 67888888


Q ss_pred             eCC-CcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeC
Q 004468          167 SED-GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDR  245 (751)
Q Consensus       167 s~D-g~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~  245 (751)
                      +.- +.|...+.....             ...|.+...       ........+.|+++|+ ++.|++....+.+.-+|+
T Consensus       155 s~~~~~I~rV~pdG~~-------------~~~~~~~~~-------~~~~~~G~nGIv~~pd-g~~Liv~~~~g~L~~fD~  213 (334)
T 2p9w_A          155 ALGMPAIARVSADGKT-------------VSTFAWESG-------NGGQRPGYSGITFDPH-SNKLIAFGGPRALTAFDV  213 (334)
T ss_dssp             EESSCEEEEECTTSCC-------------EEEEEECCC-------CSSSCCSCSEEEEETT-TTEEEEESSSSSEEEEEC
T ss_pred             CCCCCeEEEEeCCCCE-------------EeeeeecCC-------CcccccCcceEEEeCC-CCEEEEEcCCCeEEEEcC
Confidence            887 887766654331             122221111       0112345789999995 677777766999999998


Q ss_pred             CC
Q 004468          246 RM  247 (751)
Q Consensus       246 ~~  247 (751)
                      +.
T Consensus       214 ~~  215 (334)
T 2p9w_A          214 SK  215 (334)
T ss_dssp             SS
T ss_pred             CC
Confidence            73

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=95.93  E-value=0.12  Score=44.56  Aligned_cols=108  Identities=19%  Similarity=0.237  Sum_probs=87.2

Q ss_pred             cCcchhHHHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCC
Q 004468          358 TGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRID  437 (751)
Q Consensus       358 ~~~~~~~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~  437 (751)
                      ..+.....+...+......+. +..|+..+..++...+..      ...+.+.+..+...   ++.-.|+..+.+++.++
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~---~~~~~A~~~~~~a~~~~   80 (133)
T 2lni_A           11 MNPDLALMVKNKGNECFQKGD-YPQAMKHYTEAIKRNPKD------AKLYSNRAACYTKL---LEFQLALKDCEECIQLE   80 (133)
T ss_dssp             SSSCHHHHHHHHHHHHHHTTC-SHHHHHHHHHHHTTCTTC------HHHHHHHHHHHTTT---TCHHHHHHHHHHHHHHC
T ss_pred             cCcccHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCc------HHHHHHHHHHHHHh---ccHHHHHHHHHHHHHhC
Confidence            345566777778888888888 889999999999865443      34566777777654   34557888899999999


Q ss_pred             CCCcchHHHHHHHHHHhcchHHHHHHHHHhcccCCCCh
Q 004468          438 SSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNS  475 (751)
Q Consensus       438 ~~~~~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~  475 (751)
                      |.+..+++.++.++..++++.+|..++.......|...
T Consensus        81 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~  118 (133)
T 2lni_A           81 PTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCK  118 (133)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGT
T ss_pred             CCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCch
Confidence            99999999999999999999999999998888877644

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=95.92  E-value=0.17  Score=57.12  Aligned_cols=69  Identities=13%  Similarity=0.051  Sum_probs=44.7

Q ss_pred             EEECCCCCEEEEEeCC----------------CcEEEEeCCCCeEEEEecccC-C--------cceEEEEEecCCCCc--
Q 004468           56 ISWNSKGSLLISGSDD----------------THINVWSYSSRKLLHSIETGH-S--------ANVFCTKFVPETSDE--  108 (751)
Q Consensus        56 l~~s~dg~~LaSgs~D----------------g~I~IWd~~~~~~~~~l~~~h-~--------~~V~~v~fsp~s~~~--  108 (751)
                      +++.++..++..+..+                +.|..+|..+|+.+..+...+ .        .++. +...++  |+  
T Consensus       240 ~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~--G~~~  316 (571)
T 2ad6_A          240 YAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVN--GKMT  316 (571)
T ss_dssp             CEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEET--TEEE
T ss_pred             EEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccC--CcEE
Confidence            4566665566555432                359999999999988774332 1        1221 222234  53  


Q ss_pred             -EEEEEECCCcEEEEECCCC
Q 004468          109 -LVVSGAGDAEVRLFNLSRF  127 (751)
Q Consensus       109 -~l~sgs~Dg~V~vwd~~~~  127 (751)
                       .++.++.+|.+.++|..++
T Consensus       317 ~~v~~~~~~G~l~~lD~~tG  336 (571)
T 2ad6_A          317 PLLSHIDRNGILYTLNRENG  336 (571)
T ss_dssp             EEEEEECTTSEEEEEETTTC
T ss_pred             EEEEEeCCCcEEEEEECCCC
Confidence             5778889999999998865

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=95.85  E-value=0.62  Score=50.37  Aligned_cols=118  Identities=12%  Similarity=0.128  Sum_probs=71.8

Q ss_pred             CCCcEEEEEECCCCCEEEEEeC-CC----cEEEEeCCCCeEE--EEecccCCcceEEEEEecCCCCcEEEEEECCCcEEE
Q 004468           49 HQGCVNAISWNSKGSLLISGSD-DT----HINVWSYSSRKLL--HSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRL  121 (751)
Q Consensus        49 H~~~V~~l~~s~dg~~LaSgs~-Dg----~I~IWd~~~~~~~--~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~v  121 (751)
                      .......|+|+++|++|..+.. .+    .+.+.+. .+...  ..+ . .......+++.|+. +.++++-...+.|..
T Consensus       177 ~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g~~~~~~~l-~-~~~~p~giavdp~~-g~lyv~d~~~~~V~~  252 (430)
T 3tc9_A          177 GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ESGFKVITEL-T-KGQNCNGAETHPIN-GELYFNSWNAGQVFR  252 (430)
T ss_dssp             CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GGTSCSEEEE-E-ECSSCCCEEECTTT-CCEEEEETTTTEEEE
T ss_pred             CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CCceeeeeee-c-cCCCceEEEEeCCC-CEEEEEECCCCEEEE
Confidence            4456889999999995555543 22    2333333 22211  222 1 12345678899942 677777777889999


Q ss_pred             EECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCC
Q 004468          122 FNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQ  179 (751)
Q Consensus       122 wd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~  179 (751)
                      ++......        ..+... ........|+|+|++..++++-...+.|..++...
T Consensus       253 ~~~~~~~~--------~~~~~~-~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~  301 (430)
T 3tc9_A          253 YDFTTQET--------TPLFTI-QDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDW  301 (430)
T ss_dssp             EETTTTEE--------EEEEEC-SSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred             EECCCCcE--------EEEEEc-CCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCc
Confidence            99874310        011111 11235678999995433777777888999988764

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=95.81  E-value=0.14  Score=55.54  Aligned_cols=156  Identities=7%  Similarity=0.020  Sum_probs=95.5

Q ss_pred             cEEEEEECC-CCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEEC-CC----cEEEEECC
Q 004468           52 CVNAISWNS-KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG-DA----EVRLFNLS  125 (751)
Q Consensus        52 ~V~~l~~s~-dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~-Dg----~V~vwd~~  125 (751)
                      ....|+|+| ++..|..+...+.|+.+|+..+......  ........|+|.++  +++|+.+.. .+    .+.+.+..
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~--~~~~~P~~ia~d~~--G~~lyvad~~~~~~~~~v~~~~~~  213 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVY--SGLSKVRTICWTHE--ADSMIITNDQNNNDRPNNYILTRE  213 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEE--CCCSCEEEEEECTT--SSEEEEEECCSCTTSEEEEEEEGG
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEe--cCCCCcceEEEeCC--CCEEEEEeCCCCcccceEEEEeCC
Confidence            457899998 3444554444488999999876654433  34556889999999  674544443 22    23334432


Q ss_pred             CCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCce
Q 004468          126 RFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAK  205 (751)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~  205 (751)
                      ..   .      .....+. .......++++|+++.++++-..++.|..+|......            ..+....    
T Consensus       214 g~---~------~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~------------~~~~~~~----  267 (430)
T 3tc9_A          214 SG---F------KVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQET------------TPLFTIQ----  267 (430)
T ss_dssp             GT---S------CSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEE------------EEEEECS----
T ss_pred             Cc---e------eeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcE------------EEEEEcC----
Confidence            11   0      1112222 1334577889997778888877888999999875431            0111100    


Q ss_pred             ecccCCCCCccceEEEEEeCCCCc-EEEEEeCCCeEEEEeCC
Q 004468          206 RSLADPPKQTLSLKSCDISSTRPH-LLLVGGSDAFARLYDRR  246 (751)
Q Consensus       206 ~~~~~~~~~~~~v~~i~~sp~~~~-~l~sgs~D~~IriwD~~  246 (751)
                              .......++|+|+ ++ ++++-...+.|..++..
T Consensus       268 --------~~~~P~gia~~pd-G~~lyv~d~~~~~I~~~~~d  300 (430)
T 3tc9_A          268 --------DSGWEFHIQFHPS-GNYAYIVVVNQHYILRSDYD  300 (430)
T ss_dssp             --------SSSCCEEEEECTT-SSEEEEEETTTTEEEEEEEE
T ss_pred             --------CCCcceeEEEcCC-CCEEEEEECCCCEEEEEeCC
Confidence                    1134578999996 56 55666677899998765

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=95.76  E-value=1.1  Score=46.18  Aligned_cols=199  Identities=11%  Similarity=0.054  Sum_probs=103.3

Q ss_pred             CCCcEEEEEECCCCCEEEEEeCCCcEE-EEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCC
Q 004468           49 HQGCVNAISWNSKGSLLISGSDDTHIN-VWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRF  127 (751)
Q Consensus        49 H~~~V~~l~~s~dg~~LaSgs~Dg~I~-IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~  127 (751)
                      +.+.+..|.+.+++..++.+. ++.|. -+|  .++.-..+..++...+..+.+.|+  +.+++.+...+..+-+|-.  
T Consensus       120 ~~~~~~~i~~~~~~~~~~~~~-~g~v~~S~D--gG~tW~~~~~~~~~~~~~~~~~~~--~~~~~~g~~G~~~~S~d~g--  192 (327)
T 2xbg_A          120 LPGSPRLIKALGNGSAEMITN-VGAIYRTKD--SGKNWQALVQEAIGVMRNLNRSPS--GEYVAVSSRGSFYSTWEPG--  192 (327)
T ss_dssp             CSSCEEEEEEEETTEEEEEET-TCCEEEESS--TTSSEEEEECSCCCCEEEEEECTT--SCEEEEETTSSEEEEECTT--
T ss_pred             CCCCeEEEEEECCCCEEEEeC-CccEEEEcC--CCCCCEEeecCCCcceEEEEEcCC--CcEEEEECCCcEEEEeCCC--
Confidence            445678888887787777664 55443 223  233222222456678999999997  6777666443333334421  


Q ss_pred             CCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceec
Q 004468          128 SGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRS  207 (751)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  207 (751)
                       +..     ..++  -......+..+.+.+ ++.++ .++.+|.++..+...++.               |..       
T Consensus       193 -G~t-----W~~~--~~~~~~~~~~~~~~~-~g~~~-~~~~~G~~~~s~~D~G~t---------------W~~-------  240 (327)
T 2xbg_A          193 -QTA-----WEPH--NRTTSRRLHNMGFTP-DGRLW-MIVNGGKIAFSDPDNSEN---------------WGE-------  240 (327)
T ss_dssp             -CSS-----CEEE--ECCSSSCEEEEEECT-TSCEE-EEETTTEEEEEETTEEEE---------------ECC-------
T ss_pred             -CCc-----eeEC--CCCCCCccceeEECC-CCCEE-EEeCCceEEEecCCCCCe---------------eEe-------
Confidence             110     1111  123456788899888 44544 566778877764221210               100       


Q ss_pred             ccCC-CCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEE
Q 004468          208 LADP-PKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVT  286 (751)
Q Consensus       208 ~~~~-~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~  286 (751)
                      +... ......+.++.+.+. +.+++++ .++.| ++....++.-...                ... .... ..+..+.
T Consensus       241 ~~~~~~~~~~~~~~v~~~~~-~~~~~~g-~~g~i-~~S~DgG~tW~~~----------------~~~-~~~~-~~~~~v~  299 (327)
T 2xbg_A          241 LLSPLRRNSVGFLDLAYRTP-NEVWLAG-GAGAL-LCSQDGGQTWQQD----------------VDV-KKVP-SNFYKIL  299 (327)
T ss_dssp             CBCTTSSCCSCEEEEEESSS-SCEEEEE-STTCE-EEESSTTSSCEEC----------------GGG-TTSS-SCCCEEE
T ss_pred             ccCCcccCCcceEEEEecCC-CEEEEEe-CCCeE-EEeCCCCcccEEc----------------Ccc-CCCC-CCeEEEE
Confidence            0000 001234778888873 5555554 46665 3333322211000                000 0000 1367788


Q ss_pred             EcCCCCEEEEEeCCCcEEEEEC
Q 004468          287 FSPNGEEVLLSYSGEHVYLMDV  308 (751)
Q Consensus       287 fspdg~~Ll~~s~d~~I~lwdl  308 (751)
                      |.+++. +++.+.+|.|+-++-
T Consensus       300 ~~~~~~-~~~~G~~G~i~~~~~  320 (327)
T 2xbg_A          300 FFSPDQ-GFILGQKGILLRYVT  320 (327)
T ss_dssp             EEETTE-EEEECSTTEEEEECC
T ss_pred             EECCCc-eEEEcCCceEEEEcC
Confidence            875554 667778888877764

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=95.72  E-value=0.21  Score=51.54  Aligned_cols=178  Identities=7%  Similarity=0.035  Sum_probs=103.7

Q ss_pred             CcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecc----c--CCceeEEEE---ecCCCCEE
Q 004468           93 SANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQC----H--TRRVKKLAV---EVGNPHVV  163 (751)
Q Consensus        93 ~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~----h--~~~V~~l~~---sp~~~~~l  163 (751)
                      ...--+++|.+.. +.++++.-..++|..||...+..        ..+ .+.+    .  ...+..|.|   .| .+.++
T Consensus        12 ~~yPE~~~wd~~~-g~~~vs~l~~g~V~~~~~~~~~~--------~~~-~~~~~s~~g~~~~~~sGl~~~~~D~-~grL~   80 (334)
T 2p9w_A           12 NLTPEDTIYDRTR-QVFYQSNLYKGRIEVYNPKTQSH--------FNV-VIDGASSNGDGEQQMSGLSLLTHDN-SKRLF   80 (334)
T ss_dssp             TCCCSCEEEETTT-TEEEEEETTTTEEEEECTTTCCE--------EEE-CCTTTCCSSCCSEEEEEEEESSSSS-CCEEE
T ss_pred             ccCCcCccCcCCC-CEEEEEeccCCEEEEEcCCCCeE--------EEE-ecCCccccCCCcceeeEEEEeccCC-CCcEE
Confidence            3444578998873 45555555899999999874211        111 2221    1  113578999   57 46677


Q ss_pred             EEEe-------------CCCcEEEEecC---CCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCC
Q 004468          164 WSAS-------------EDGTLRQHDFR---QGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR  227 (751)
Q Consensus       164 ~s~s-------------~Dg~I~iwDlr---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~  227 (751)
                      ++..             .+..|..||+.   +++..            ...++..-.................+++.+ +
T Consensus        81 vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~------------~~~dL~~~~~~~~~~~g~~~~~~nDvavD~-~  147 (334)
T 2p9w_A           81 AVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPV------------WSVNFEKVQDEFEKKAGKRPFGVVQSAQDR-D  147 (334)
T ss_dssp             EEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCS------------EEEESHHHHHHHHHHHSSCCEEEEEEEECT-T
T ss_pred             EEEcccccccccccccCCCCEEEEEcCCcCCCCCEE------------EEecCccccccccccccccccCCceeEECC-C
Confidence            6533             26778899988   55422            222221100000000000113578999999 4


Q ss_pred             CcEEEEEeCC-CeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEE
Q 004468          228 PHLLLVGGSD-AFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLM  306 (751)
Q Consensus       228 ~~~l~sgs~D-~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lw  306 (751)
                      ++..++++.- +.|..++..... +..+....          +     ........+.|+++|+|+.|++....+.+..|
T Consensus       148 GnaYVt~s~~~~~I~rV~pdG~~-~~~~~~~~----------~-----~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~f  211 (334)
T 2p9w_A          148 GNSYVAFALGMPAIARVSADGKT-VSTFAWES----------G-----NGGQRPGYSGITFDPHSNKLIAFGGPRALTAF  211 (334)
T ss_dssp             SCEEEEEEESSCEEEEECTTSCC-EEEEEECC----------C-----CSSSCCSCSEEEEETTTTEEEEESSSSSEEEE
T ss_pred             CCEEEeCCCCCCeEEEEeCCCCE-EeeeeecC----------C-----CcccccCcceEEEeCCCCEEEEEcCCCeEEEE
Confidence            7888888888 887777765321 11110000          0     01111237889999999999999889999999


Q ss_pred             ECCC
Q 004468          307 DVNH  310 (751)
Q Consensus       307 dl~~  310 (751)
                      |+.+
T Consensus       212 D~~~  215 (334)
T 2p9w_A          212 DVSK  215 (334)
T ss_dssp             ECSS
T ss_pred             cCCC
Confidence            9885

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=95.58  E-value=0.38  Score=54.27  Aligned_cols=25  Identities=12%  Similarity=0.065  Sum_probs=20.7

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCCcc
Q 004468          290 NGEEVLLSYSGEHVYLMDVNHAGGR  314 (751)
Q Consensus       290 dg~~Ll~~s~d~~I~lwdl~~~~~~  314 (751)
                      .+..|++++.|+.++.||.++++..
T Consensus       496 agglvf~g~~dg~l~A~D~~tG~~l  520 (582)
T 1flg_A          496 AGNLVFTGTGDGYFKAFDAKSGKEL  520 (582)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEE
T ss_pred             CCCEEEEECCCCcEEEEECCCCCEE
Confidence            4667888999999999999997533

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=95.48  E-value=1.1  Score=49.04  Aligned_cols=175  Identities=13%  Similarity=0.122  Sum_probs=98.2

Q ss_pred             cEEEEEECCC--CCEEEEEeCCCcEEEEeCCCCeEEEEeccc--CCcceEEEEE-------ecCCCCcEEEEEECCC---
Q 004468           52 CVNAISWNSK--GSLLISGSDDTHINVWSYSSRKLLHSIETG--HSANVFCTKF-------VPETSDELVVSGAGDA---  117 (751)
Q Consensus        52 ~V~~l~~s~d--g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~--h~~~V~~v~f-------sp~s~~~~l~sgs~Dg---  117 (751)
                      ....|+|+|.  ++++++-...+.|++.|..++.....+..+  .......++|       .++  +..|+.+...+   
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~--G~~lyvad~~~~~~  217 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADE--AEYMIVAIDYDGKG  217 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCT--TCEEEEEECCCTTG
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCC--CCEEEEEeCCCCCc
Confidence            3678999983  555555555577899998877665444221  2235899999       998  67555554443   


Q ss_pred             ----cEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecC-------CCCCCCCC
Q 004468          118 ----EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFR-------QGSSCPPA  186 (751)
Q Consensus       118 ----~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr-------~~~~~~~~  186 (751)
                          .|.+.+... .+.......   ...+.. -.....++++|+++.++++-..++.|..+|+.       ++..-.+.
T Consensus       218 ~~~~~V~~i~r~~-~G~~~~~~~---~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~  292 (496)
T 3kya_A          218 DESPSVYIIKRNA-DGTFDDRSD---IQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPI  292 (496)
T ss_dssp             GGEEEEEEEECCT-TSCCSTTSC---EEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCB
T ss_pred             ccCceEEEEecCC-CCceeeccc---ceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccc
Confidence                255665332 111100000   012211 12345788899788888888899999999997       44320000


Q ss_pred             CCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCc-EEEEEeCCCeEEEEeCC
Q 004468          187 GSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPH-LLLVGGSDAFARLYDRR  246 (751)
Q Consensus       187 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~-~l~sgs~D~~IriwD~~  246 (751)
                      ..........++..           + .......|+|+|+ ++ ++++=.....|+.++..
T Consensus       293 ~~~~~g~~~~l~~~-----------~-~~~~p~~ia~~p~-G~~lYvaD~~~h~I~kid~d  340 (496)
T 3kya_A          293 VKNNPNTFKQLFTI-----------A-DPSWEFQIFIHPT-GKYAYFGVINNHYFMRSDYD  340 (496)
T ss_dssp             GGGCTTTEEEEEEC-----------S-SSSCCEEEEECTT-SSEEEEEETTTTEEEEEEEE
T ss_pred             ccccccccceeEec-----------C-CCCCceEEEEcCC-CCEEEEEeCCCCEEEEEecC
Confidence            00000000111111           0 1234578999996 56 45555667889886653

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=95.40  E-value=1.9  Score=45.10  Aligned_cols=107  Identities=8%  Similarity=0.017  Sum_probs=61.7

Q ss_pred             CcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeE--EEEec--ccCCcceEEEEEecC---CCCcEEEEEECC-----Cc
Q 004468           51 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKL--LHSIE--TGHSANVFCTKFVPE---TSDELVVSGAGD-----AE  118 (751)
Q Consensus        51 ~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~--~~~l~--~~h~~~V~~v~fsp~---s~~~~l~sgs~D-----g~  118 (751)
                      ...+.|+|.|+|+++++ ..++.|.+++  ++..  +..+.  .........|+|+|+   . +.++++-...     +.
T Consensus        31 ~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~-g~lYv~~~~~~~~~~~~  106 (352)
T 2ism_A           31 EVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQE-PYVYAYRTVAEGGLRNQ  106 (352)
T ss_dssp             SCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTS-CEEEEEEEECTTSSEEE
T ss_pred             CCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCC-CEEEEEEecCCCCCccE
Confidence            45679999999996665 4569999998  3432  22221  122456899999997   3 4555554433     56


Q ss_pred             EEEEECCCCCCCCCCCCCCCC-ceeec---ccCCceeEEEEecCCCCEEEEEe
Q 004468          119 VRLFNLSRFSGRGLDDNAITP-SALYQ---CHTRRVKKLAVEVGNPHVVWSAS  167 (751)
Q Consensus       119 V~vwd~~~~~~~~~~~~~~~~-~~~~~---~h~~~V~~l~~sp~~~~~l~s~s  167 (751)
                      |..++.....   +.  ..+. +..+.   ........|+|.| ++.++++.+
T Consensus       107 v~r~~~~~~~---~~--~~~~l~~~~p~~~~~~h~~~~l~~~p-dG~Lyv~~G  153 (352)
T 2ism_A          107 VVRLRHLGER---GV--LDRVVLDGIPARPHGLHSGGRIAFGP-DGMLYVTTG  153 (352)
T ss_dssp             EEEEEECSSC---EE--EEEEEEEEECCCTTCCCCCCCEEECT-TSCEEEECC
T ss_pred             EEEEEeCCCC---cC--ceEEEEEeCCCCCCCCcCCceEEECC-CCCEEEEEC
Confidence            7777776310   00  0011 11122   1112346899999 557777654

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=95.36  E-value=0.063  Score=62.22  Aligned_cols=163  Identities=9%  Similarity=0.033  Sum_probs=97.2

Q ss_pred             EEEEEECC-CCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECC-CcEEEEECCCCCCC
Q 004468           53 VNAISWNS-KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD-AEVRLFNLSRFSGR  130 (751)
Q Consensus        53 V~~l~~s~-dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~D-g~V~vwd~~~~~~~  130 (751)
                      ...|++.+ .++++++-...+.|.+.++...... .+..........|++.|.. +.++++-... +.|.+.++....  
T Consensus       455 P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~-~l~~~~~~~P~giavDp~~-g~ly~td~~~~~~I~~~~~dG~~--  530 (699)
T 1n7d_A          455 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRK-TLFREQGSKPRAIVVDPVH-GFMYWTDWGTPAKIKKGGLNGVD--  530 (699)
T ss_dssp             CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEE-EECCCSSCCCCCEECCSSS-SCCEECCCSSSCCEEBCCSSSCC--
T ss_pred             cceEEEEeeCCcEEEEeccCCeEEEEecCCCceE-EEEeCCCCCcceEEEccCC-CcEEEcccCCCCeEEEEeCCCCC--
Confidence            45678875 4555666566788999998754333 3323333456788999873 4555554333 677777765321  


Q ss_pred             CCCCCCCCCceee-cccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceeccc
Q 004468          131 GLDDNAITPSALY-QCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLA  209 (751)
Q Consensus       131 ~~~~~~~~~~~~~-~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  209 (751)
                               ...+ ...-...+.|+|+|+++.++++-+..+.|..+|+.....            .++...         
T Consensus       531 ---------~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~------------~~~~~~---------  580 (699)
T 1n7d_A          531 ---------IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR------------KTILED---------  580 (699)
T ss_dssp             ---------CCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCC------------EEECCC---------
T ss_pred             ---------eeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCce------------EEEEec---------
Confidence                     1111 122344678999997888998888889999999864321            111110         


Q ss_pred             CCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccc
Q 004468          210 DPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTS  253 (751)
Q Consensus       210 ~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~  253 (751)
                        .........|++..  ..++++....+.|..+|..+++.+..
T Consensus       581 --~~~~~~P~glavd~--~~lywtd~~~~~V~~~d~~~G~~~~~  620 (699)
T 1n7d_A          581 --EKRLAHPFSLAVFE--DKVFWTDIINEAIFSANRLTGSDVNL  620 (699)
T ss_dssp             --SSSCSSCCCCEEET--TEEEEECSTTTCEEEEETTTEEEEEC
T ss_pred             --CCcCCCceEeEEEC--CEEEEEeCCCCeEEEEEccCCCceEE
Confidence              00111233445554  35666666778999999876654443

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=95.31  E-value=2  Score=50.17  Aligned_cols=202  Identities=12%  Similarity=0.058  Sum_probs=116.7

Q ss_pred             CCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEec-ccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCC
Q 004468           50 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIE-TGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFS  128 (751)
Q Consensus        50 ~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~-~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~  128 (751)
                      ...|.++...++|.+.+ |+.++-|..+|..+++...... ......|.++...++  +.+.+ |.. +-|.++|..+..
T Consensus       406 ~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~--g~lwi-gt~-~Gl~~~~~~~~~  480 (781)
T 3v9f_A          406 SNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKN--KKIWI-GTH-AGVFVIDLASKK  480 (781)
T ss_dssp             CSBEEEEEECTTSCEEE-EETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTT--SEEEE-EET-TEEEEEESSSSS
T ss_pred             CcceEEEEECCCCCEEE-EeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCC--CCEEE-EEC-CceEEEeCCCCe
Confidence            46799999988888666 6666678999987765433221 113467888887766  55544 444 558888887532


Q ss_pred             CCCCCCCCCCCceeec---ccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCce
Q 004468          129 GRGLDDNAITPSALYQ---CHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAK  205 (751)
Q Consensus       129 ~~~~~~~~~~~~~~~~---~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~  205 (751)
                      -        .......   .....|.++...+ ++. |+.|+.++-|..||..+.+..             .+...    
T Consensus       481 ~--------~~~~~~~~~~~~~~~i~~i~~d~-~g~-lWigt~~~Gl~~~~~~~~~~~-------------~~~~~----  533 (781)
T 3v9f_A          481 V--------IHHYDTSNSQLLENFVRSIAQDS-EGR-FWIGTFGGGVGIYTPDMQLVR-------------KFNQY----  533 (781)
T ss_dssp             C--------CEEECTTTSSCSCSCEEEEEECT-TCC-EEEEESSSCEEEECTTCCEEE-------------EECTT----
T ss_pred             E--------EecccCcccccccceeEEEEEcC-CCC-EEEEEcCCCEEEEeCCCCeEE-------------EccCC----
Confidence            1        0011000   1146788888776 444 566776555777887654310             11000    


Q ss_pred             ecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEE
Q 004468          206 RSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHV  285 (751)
Q Consensus       206 ~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v  285 (751)
                           ..-....|.++...++ +. |..|+.+|.|..||..+.+.              ..+..    ..|-....|.++
T Consensus       534 -----~~l~~~~i~~i~~d~~-g~-lWi~T~~Glv~~~d~~~~~~--------------~~~~~----~~gl~~~~i~~i  588 (781)
T 3v9f_A          534 -----EGFCSNTINQIYRSSK-GQ-MWLATGEGLVCFPSARNFDY--------------QVFQR----KEGLPNTHIRAI  588 (781)
T ss_dssp             -----TTCSCSCEEEEEECTT-SC-EEEEETTEEEEESCTTTCCC--------------EEECG----GGTCSCCCCCEE
T ss_pred             -----CCCCCCeeEEEEECCC-CC-EEEEECCCceEEECCCCCcE--------------EEccc----cCCCCCceEEEE
Confidence                 0012346788888774 44 44455566658888765431              11110    011122247889


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEECCC
Q 004468          286 TFSPNGEEVLLSYSGEHVYLMDVNH  310 (751)
Q Consensus       286 ~fspdg~~Ll~~s~d~~I~lwdl~~  310 (751)
                      ..+++|...+ ++.+ -|..||..+
T Consensus       589 ~~d~~g~lW~-~t~~-Gl~~~~~~~  611 (781)
T 3v9f_A          589 SEDKNGNIWA-STNT-GISCYITSK  611 (781)
T ss_dssp             EECSSSCEEE-ECSS-CEEEEETTT
T ss_pred             EECCCCCEEE-EcCC-ceEEEECCC
Confidence            9999987544 4444 477888776

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=95.29  E-value=0.19  Score=43.25  Aligned_cols=103  Identities=15%  Similarity=0.030  Sum_probs=79.0

Q ss_pred             HHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCC---cchH
Q 004468          368 EIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSS---FRAH  444 (751)
Q Consensus       368 ~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~---~~a~  444 (751)
                      ..+...+..|+ |..|+..+..++...+...   .....+...+.++...   |+.-.|+.....++.++|.+   ..++
T Consensus         7 ~~a~~~~~~~~-~~~A~~~~~~~~~~~p~~~---~~~~~~~~lg~~~~~~---~~~~~A~~~~~~~~~~~p~~~~~~~~~   79 (129)
T 2xev_A            7 NVAFDALKNGK-YDDASQLFLSFLELYPNGV---YTPNALYWLGESYYAT---RNFQLAEAQFRDLVSRYPTHDKAAGGL   79 (129)
T ss_dssp             HHHHHHHHTTC-HHHHHHHHHHHHHHCSSST---THHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTTSTTHHHHH
T ss_pred             HHHHHHHHhCC-HHHHHHHHHHHHHHCCCCc---ccHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHCCCCcccHHHH
Confidence            44556666777 8899999999998776542   1113445555555543   34556788888899999999   7889


Q ss_pred             HHHHHHHHHhcchHHHHHHHHHhcccCCCChhh
Q 004468          445 LYMSEALEQLCKYKEALDFAIAAQCLDPSNSVM  477 (751)
Q Consensus       445 ~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~~~  477 (751)
                      +.++.++..+|++.+|...++.+...+|.....
T Consensus        80 ~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~  112 (129)
T 2xev_A           80 LKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAA  112 (129)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHH
Confidence            999999999999999999999999999976543

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=95.28  E-value=0.43  Score=54.02  Aligned_cols=69  Identities=7%  Similarity=0.073  Sum_probs=47.2

Q ss_pred             EEECCCCCEEEEEeCC----------------CcEEEEeCCCCeEEEEecccCCc---------ceEEEEEe-cCCCC--
Q 004468           56 ISWNSKGSLLISGSDD----------------THINVWSYSSRKLLHSIETGHSA---------NVFCTKFV-PETSD--  107 (751)
Q Consensus        56 l~~s~dg~~LaSgs~D----------------g~I~IWd~~~~~~~~~l~~~h~~---------~V~~v~fs-p~s~~--  107 (751)
                      +++.+...++..+..+                ..|.-+|..+|+.+..+...|..         ++. +... .+  |  
T Consensus       246 ~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~--G~~  322 (599)
T 1w6s_A          246 YAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKD--GKA  322 (599)
T ss_dssp             CEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTT--SCE
T ss_pred             eeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccC--CcE
Confidence            4566666777776654                37999999999998887544321         121 2222 33  5  


Q ss_pred             -cEEEEEECCCcEEEEECCCC
Q 004468          108 -ELVVSGAGDAEVRLFNLSRF  127 (751)
Q Consensus       108 -~~l~sgs~Dg~V~vwd~~~~  127 (751)
                       ..++.++.+|.+.+.|..++
T Consensus       323 ~~~v~~~~~~G~l~~lD~~tG  343 (599)
T 1w6s_A          323 RKLLTHPDRNGIVYTLDRTDG  343 (599)
T ss_dssp             EEEEEEECTTSEEEEEETTTC
T ss_pred             EEEEEEECCCcEEEEEECCCC
Confidence             56778899999999999865

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=95.27  E-value=2.6  Score=47.78  Aligned_cols=202  Identities=7%  Similarity=0.008  Sum_probs=119.4

Q ss_pred             CcEEEEEECCC-CCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCC
Q 004468           51 GCVNAISWNSK-GSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSG  129 (751)
Q Consensus        51 ~~V~~l~~s~d-g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~  129 (751)
                      ..+.+|+|.+. +.++.+-...+.|..+++........+ ...-.....+++.+.. ++++++-+..+.|.+.++.... 
T Consensus       349 ~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~-~~~~~~p~GlAvD~~~-~~lY~tD~~~~~I~v~~~~G~~-  425 (619)
T 3s94_A          349 RHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVV-TAQIAHPDGIAVDWVA-RNLYWTDTGTDRIEVTRLNGTM-  425 (619)
T ss_dssp             SSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE-CSSCSCCCEEEEETTT-TEEEEEETTTTEEEEEETTSCS-
T ss_pred             CccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEE-ECCCCCcCceEEeccc-CcEEEEeCCCCcEEEEeCCCCe-
Confidence            34678899884 445555556778888888653332223 3334567788998753 5667776778899999987421 


Q ss_pred             CCCCCCCCCCceee-cccCCceeEEEEecCCCCEEEEEeC-CCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceec
Q 004468          130 RGLDDNAITPSALY-QCHTRRVKKLAVEVGNPHVVWSASE-DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRS  207 (751)
Q Consensus       130 ~~~~~~~~~~~~~~-~~h~~~V~~l~~sp~~~~~l~s~s~-Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  207 (751)
                                ...+ ...-.....|++.|..+.++++-.. .+.|...++....            ...+..        
T Consensus       426 ----------~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~------------~~~l~~--------  475 (619)
T 3s94_A          426 ----------RKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSD------------RVVLVN--------  475 (619)
T ss_dssp             ----------CEEEECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS------------CEEEEC--------
T ss_pred             ----------EEEEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCc------------cEEEEe--------
Confidence                      2222 2234567899999977788877533 3667666664322            111111        


Q ss_pred             ccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEE
Q 004468          208 LADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTF  287 (751)
Q Consensus       208 ~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~f  287 (751)
                           ......+.+++++.+++++++=+..+.|..+++..... ..             +....   ..|    ..++++
T Consensus       476 -----~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~~~-~~-------------~~~~~---l~~----P~glav  529 (619)
T 3s94_A          476 -----TSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGR-RV-------------LVEDK---IPH----IFGFTL  529 (619)
T ss_dssp             -----SSCSCEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC-EE-------------EEECC---CCS----SCCEEE
T ss_pred             -----CCCCCCeeeEEcccCCEEEEEECCCCEEEEEecCCCce-EE-------------EeccC---CCC----cEEEEE
Confidence                 12346778999986555555555667898888753221 11             00000   011    234555


Q ss_pred             cCCCCEEEEEeCCCcEEEEECCCCC
Q 004468          288 SPNGEEVLLSYSGEHVYLMDVNHAG  312 (751)
Q Consensus       288 spdg~~Ll~~s~d~~I~lwdl~~~~  312 (751)
                      ..+ ...++-...+.|+..|..++.
T Consensus       530 ~~~-~ly~tD~~~~~I~~~~k~~g~  553 (619)
T 3s94_A          530 LGD-YVYWTDWQRRSIERVHKRSAE  553 (619)
T ss_dssp             ETT-EEEEECTTSSCEEEEESSSCC
T ss_pred             ECC-EEEEeecCCCeEEEEEcCCCc
Confidence            433 333344457788888888863

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=95.21  E-value=0.097  Score=60.77  Aligned_cols=87  Identities=16%  Similarity=0.051  Sum_probs=43.8

Q ss_pred             hhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcchHHHHHHHHHHhcchHH
Q 004468          380 PYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKE  459 (751)
Q Consensus       380 ~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~a~~~~~~~l~~l~~~~~  459 (751)
                      +..|+..|.++|...++.      ...|.+.+.++...+   +.-.|+....+|++++|.+..+++.++.++..+|++.+
T Consensus        59 ~~eA~~~~~~Al~l~P~~------~~a~~nLg~~l~~~g---~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~e  129 (723)
T 4gyw_A           59 LQEALMHYKEAIRISPTF------ADAYSNMGNTLKEMQ---DVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPE  129 (723)
T ss_dssp             HHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence            444444444444433322      223444444444332   23345555555555555555555555555556666666


Q ss_pred             HHHHHHHhcccCCCCh
Q 004468          460 ALDFAIAAQCLDPSNS  475 (751)
Q Consensus       460 a~~~~~~~~~~~p~~~  475 (751)
                      |+.++++.....|.+.
T Consensus       130 Ai~~~~~Al~l~P~~~  145 (723)
T 4gyw_A          130 AIASYRTALKLKPDFP  145 (723)
T ss_dssp             HHHHHHHHHHHCSCCH
T ss_pred             HHHHHHHHHHhCCCCh
Confidence            6555555555555443

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=94.89  E-value=0.12  Score=49.62  Aligned_cols=104  Identities=12%  Similarity=0.011  Sum_probs=83.7

Q ss_pred             HHHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhH----------------HHHHhhcccccchhhhHH
Q 004468          364 RMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCI----------------RAALLLKRKWKNDAQMAI  427 (751)
Q Consensus       364 ~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~----------------ra~~~~~r~w~~d~y~al  427 (751)
                      ..+...+...+..|. +..|+..+.+++...+..      ...+..                ++.++...   |+.-.|+
T Consensus         5 ~~~~~~g~~~~~~g~-~~~A~~~~~~al~~~p~~------~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~---g~~~~A~   74 (208)
T 3urz_A            5 DEMLQKVSAAIEAGQ-NGQAVSYFRQTIALNIDR------TEMYYWTNVDKNSEISSKLATELALAYKKN---RNYDKAY   74 (208)
T ss_dssp             HHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCHHH------HHHHHHHHSCTTSHHHHHHHHHHHHHHHHT---TCHHHHH
T ss_pred             HHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCC------hHHHHHhhhcchhhhhHHHHHHHHHHHHHC---CCHHHHH
Confidence            445667777888888 889999999998865443      223334                66666654   4456788


Q ss_pred             HhhHHHhcCCCCCcchHHHHHHHHHHhcchHHHHHHHHHhcccCCCChhh
Q 004468          428 RDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVM  477 (751)
Q Consensus       428 ~d~~~a~~~~~~~~~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~~~  477 (751)
                      ....+++.++|.+..+++.++.++..+|++.+|..+++.+....|.....
T Consensus        75 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a  124 (208)
T 3urz_A           75 LFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAA  124 (208)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Confidence            89999999999999999999999999999999999999999999987643

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=94.83  E-value=0.35  Score=41.02  Aligned_cols=106  Identities=25%  Similarity=0.222  Sum_probs=83.0

Q ss_pred             chhHHHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCC
Q 004468          361 GKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSS  440 (751)
Q Consensus       361 ~~~~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~  440 (751)
                      .....+...+......+. +..++..+..++...+..      ...+.+.+..+...   ++.-.|+....+++.++|.+
T Consensus        10 ~~~~~~~~~~~~~~~~~~-~~~A~~~~~~~~~~~~~~------~~~~~~~a~~~~~~---~~~~~A~~~~~~~~~~~~~~   79 (131)
T 2vyi_A           10 AEAERLKTEGNEQMKVEN-FEAAVHFYGKAIELNPAN------AVYFCNRAAAYSKL---GNYAGAVQDCERAICIDPAY   79 (131)
T ss_dssp             HHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTTC
T ss_pred             hhhHHHHHHHHHHHHccC-HHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHh---hchHHHHHHHHHHHhcCccC
Confidence            344555666777777777 889999999999876543      23556666666554   34556888889999999999


Q ss_pred             cchHHHHHHHHHHhcchHHHHHHHHHhcccCCCChh
Q 004468          441 FRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSV  476 (751)
Q Consensus       441 ~~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~~  476 (751)
                      ..+++.++.++..++++.+|..++.......|....
T Consensus        80 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~  115 (131)
T 2vyi_A           80 SKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNET  115 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchH
Confidence            999999999999999999999999998888886544

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=94.83  E-value=3.5  Score=40.84  Aligned_cols=167  Identities=10%  Similarity=0.101  Sum_probs=99.3

Q ss_pred             CcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeE---EEEec-----ccCCcceEEEEEecCCCCcEEEEEECCCcEEEE
Q 004468           51 GCVNAISWNSKGSLLISGSDDTHINVWSYSSRKL---LHSIE-----TGHSANVFCTKFVPETSDELVVSGAGDAEVRLF  122 (751)
Q Consensus        51 ~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~---~~~l~-----~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vw  122 (751)
                      ...-.|++.+++.++++.-.++.+.++++.....   +....     .......-.++|.|.  ++.|+++.......||
T Consensus        70 ~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~--~~~L~va~E~~p~~i~  147 (255)
T 3qqz_A           70 KDLETIEYIGDNQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQ--DHTFWFFKEKNPIEVY  147 (255)
T ss_dssp             SSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETT--TTEEEEEEESSSEEEE
T ss_pred             CChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCC--CCEEEEEECcCCceEE
Confidence            4677889999998777766778899998764332   22221     123456789999999  4555555544445555


Q ss_pred             ECCCCCCCCCCCCCCCCceee-------cccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccce
Q 004468          123 NLSRFSGRGLDDNAITPSALY-------QCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRN  195 (751)
Q Consensus       123 d~~~~~~~~~~~~~~~~~~~~-------~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~  195 (751)
                      .+......       ..+..+       ..+...+.++++.|..+++++.....+.|.++|....-             .
T Consensus       148 ~~~g~~~~-------~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~~-------------~  207 (255)
T 3qqz_A          148 KVNGLLSS-------NELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGEV-------------I  207 (255)
T ss_dssp             EEESTTCS-------SCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCCE-------------E
T ss_pred             EEcccccC-------CceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCCE-------------E
Confidence            55410000       011111       11234578999999888888888888999999976431             2


Q ss_pred             EEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeC
Q 004468          196 ILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDR  245 (751)
Q Consensus       196 ~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~  245 (751)
                      ..+.+..+...    ........-.|+|.++ ++++++ +.-+.++.|..
T Consensus       208 ~~~~L~~g~~~----l~~~~~qpEGia~d~~-G~lyIv-sE~n~~y~f~~  251 (255)
T 3qqz_A          208 GEMSLTKGSRG----LSHNIKQAEGVAMDAS-GNIYIV-SEPNRFYRFTP  251 (255)
T ss_dssp             EEEECSTTGGG----CSSCCCSEEEEEECTT-CCEEEE-ETTTEEEEEEC
T ss_pred             EEEEcCCccCC----cccccCCCCeeEECCC-CCEEEE-cCCceEEEEEe
Confidence            22333322100    0111234578999995 665555 66666666654

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=94.81  E-value=0.12  Score=46.64  Aligned_cols=100  Identities=10%  Similarity=-0.017  Sum_probs=79.2

Q ss_pred             HHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcchHHH
Q 004468          367 VEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLY  446 (751)
Q Consensus       367 ~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~a~~~  446 (751)
                      ...+.-.+..|+ |..|+..+..+|...+..      ...+.+.+..+...+   +.-.|+....+++.++|.++.+++.
T Consensus        35 ~~la~~y~~~~~-~~~A~~~~~~al~~~p~~------~~a~~~lg~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~  104 (150)
T 4ga2_A           35 FYFAKLYYEAKE-YDLAKKYICTYINVQERD------PKAHRFLGLLYELEE---NTDKAVECYRRSVELNPTQKDLVLK  104 (150)
T ss_dssp             HHHHHHHHHTTC-HHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHcCC-HHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcC---chHHHHHHHHHHHHhCCCCHHHHHH
Confidence            345555666677 889999999999877665      446777787777654   4567888899999999999999999


Q ss_pred             HHHHHHHhcchHHHHH-HHHHhcccCCCChh
Q 004468          447 MSEALEQLCKYKEALD-FAIAAQCLDPSNSV  476 (751)
Q Consensus       447 ~~~~l~~l~~~~~a~~-~~~~~~~~~p~~~~  476 (751)
                      ++.++..++++.+|.. +++......|....
T Consensus       105 la~~~~~~~~~~~aa~~~~~~al~l~P~~~~  135 (150)
T 4ga2_A          105 IAELLCKNDVTDGRAKYWVERAAKLFPGSPA  135 (150)
T ss_dssp             HHHHHHHHCSSSSHHHHHHHHHHHHSTTCHH
T ss_pred             HHHHHHHcCChHHHHHHHHHHHHHhCcCCHH
Confidence            9999999999988775 46788888887543

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=94.69  E-value=0.27  Score=52.28  Aligned_cols=107  Identities=10%  Similarity=0.002  Sum_probs=76.0

Q ss_pred             cchhHHHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCC
Q 004468          360 LGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSS  439 (751)
Q Consensus       360 ~~~~~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~  439 (751)
                      +.....+...+......|. +..|+..|..+|...+..      ...|.+|+.++...+-  +.-.|+..+.+++.++|.
T Consensus        94 p~~~~a~~~lg~~~~~~g~-~~~Al~~~~~al~l~P~~------~~a~~~~g~~l~~~g~--d~~eAl~~~~~al~l~P~  164 (382)
T 2h6f_A           94 DKFRDVYDYFRAVLQRDER-SERAFKLTRDAIELNAAN------YTVWHFRRVLLKSLQK--DLHEEMNYITAIIEEQPK  164 (382)
T ss_dssp             HHHHHHHHHHHHHHHHTCC-CHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHHCTT
T ss_pred             hhhHHHHHHHHHHHHHCCC-hHHHHHHHHHHHHhCccC------HHHHHHHHHHHHHccc--CHHHHHHHHHHHHHHCCC
Confidence            3333434444444444555 778888888888877654      3466777777766532  245678888888888888


Q ss_pred             CcchHHHHHHHHHHhcchHHHHHHHHHhcccCCCCh
Q 004468          440 SFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNS  475 (751)
Q Consensus       440 ~~~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~  475 (751)
                      +..+++.+..++..++++.+|+.++.......|.+.
T Consensus       165 ~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~  200 (382)
T 2h6f_A          165 NYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNY  200 (382)
T ss_dssp             CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCH
T ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCH
Confidence            888888888888888888888888888877777654

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=94.67  E-value=0.13  Score=54.83  Aligned_cols=108  Identities=9%  Similarity=-0.014  Sum_probs=85.9

Q ss_pred             cchhHHHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCC
Q 004468          360 LGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSS  439 (751)
Q Consensus       360 ~~~~~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~  439 (751)
                      |.....+...+......|..+..|+..+..+|...+..      ...|.+|+.++...   |+.-.|+..+.+++.++|.
T Consensus       128 P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~------~~a~~~~g~~~~~~---g~~~eAl~~~~kal~ldP~  198 (382)
T 2h6f_A          128 AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKN------YQVWHHRRVLVEWL---RDPSQELEFIADILNQDAK  198 (382)
T ss_dssp             TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHH---TCCTTHHHHHHHHHHHCTT
T ss_pred             ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHc---cCHHHHHHHHHHHHHhCcc
Confidence            33334444445555555544888999999999877665      45778888888765   3455789999999999999


Q ss_pred             CcchHHHHHHHHHHhcchHHHHHHHHHhcccCCCChh
Q 004468          440 SFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSV  476 (751)
Q Consensus       440 ~~~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~~  476 (751)
                      +..+++.++.++..+|++.+|+.+........|.+..
T Consensus       199 ~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~  235 (382)
T 2h6f_A          199 NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNS  235 (382)
T ss_dssp             CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHH
T ss_pred             CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHH
Confidence            9999999999999999999999999999999997654

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=94.65  E-value=1.6  Score=49.32  Aligned_cols=106  Identities=12%  Similarity=0.082  Sum_probs=63.0

Q ss_pred             CCEEEEEeC-CCcEEEEeC-CCCeEEEEecccCCcc----------eEEEEEecCCCCcE----EEEEECCCcEEEEECC
Q 004468           62 GSLLISGSD-DTHINVWSY-SSRKLLHSIETGHSAN----------VFCTKFVPETSDEL----VVSGAGDAEVRLFNLS  125 (751)
Q Consensus        62 g~~LaSgs~-Dg~I~IWd~-~~~~~~~~l~~~h~~~----------V~~v~fsp~s~~~~----l~sgs~Dg~V~vwd~~  125 (751)
                      +..|..++. ++.|.-+|. .+|+.+.++.......          ...++..|.  +..    |+.++.|+.|..+|..
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~--~g~~~~rV~v~t~dg~l~AlDa~  139 (599)
T 1w6s_A           62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPG--DGKTPALILKTQLDGNVAALNAE  139 (599)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECC--CSSSCCEEEEECTTSEEEEEETT
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEec--CCcceeEEEEEcCCCEEEEEECC
Confidence            456666666 889999999 8999988873322110          123455443  333    7788889999999998


Q ss_pred             CCCCCCCCCCCCCCceeecccC----CceeE-EEEecCCCCEEEEEe-----CCCcEEEEecCCCC
Q 004468          126 RFSGRGLDDNAITPSALYQCHT----RRVKK-LAVEVGNPHVVWSAS-----EDGTLRQHDFRQGS  181 (751)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~h~----~~V~~-l~~sp~~~~~l~s~s-----~Dg~I~iwDlr~~~  181 (751)
                      ++.          .+-......    ..+.+ -.+.  ++.+++.++     .+|.|+.+|.++++
T Consensus       140 TG~----------~~W~~~~~~~~~~~~~~ssP~v~--~g~V~vg~~g~e~g~~g~v~A~D~~TG~  193 (599)
T 1w6s_A          140 TGE----------TVWKVENSDIKVGSTLTIAPYVV--KDKVIIGSSGAELGVRGYLTAYDVKTGE  193 (599)
T ss_dssp             TCC----------EEEEEECCCGGGTCBCCSCCEEE--TTEEEECCBCGGGTCCCEEEEEETTTCC
T ss_pred             CCC----------EEEeecCCCCCccceeecCCEEE--CCEEEEEecccccCCCCeEEEEECCCCc
Confidence            652          222221111    01111 1111  344443332     38999999999986

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=94.64  E-value=0.49  Score=42.36  Aligned_cols=106  Identities=15%  Similarity=0.094  Sum_probs=85.3

Q ss_pred             hhHHHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCc
Q 004468          362 KCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSF  441 (751)
Q Consensus       362 ~~~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~  441 (751)
                      ....+...+...+..|. +..|+..+..++...+..      ...+.+.+..+...+   +.-.|+....+++.++|.+.
T Consensus        12 ~~~~~~~~a~~~~~~~~-~~~A~~~~~~al~~~~~~------~~~~~~~a~~~~~~~---~~~~A~~~~~~a~~~~~~~~   81 (166)
T 1a17_A           12 RAEELKTQANDYFKAKD-YENAIKFYSQAIELNPSN------AIYYGNRSLAYLRTE---CYGYALGDATRAIELDKKYI   81 (166)
T ss_dssp             HHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHHHccC-HHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCcccH
Confidence            44556666777777777 889999999999876544      345667777776543   34568888999999999999


Q ss_pred             chHHHHHHHHHHhcchHHHHHHHHHhcccCCCChhh
Q 004468          442 RAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVM  477 (751)
Q Consensus       442 ~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~~~  477 (751)
                      .+++.++.++..++++.+|..++.......|.....
T Consensus        82 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~  117 (166)
T 1a17_A           82 KGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDA  117 (166)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHH
Confidence            999999999999999999999999998888876543

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=94.64  E-value=5.5  Score=46.38  Aligned_cols=201  Identities=10%  Similarity=0.050  Sum_probs=117.9

Q ss_pred             CCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEec-------------ccCCcceEEEEEecCCCCcEEEEEECC
Q 004468           50 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIE-------------TGHSANVFCTKFVPETSDELVVSGAGD  116 (751)
Q Consensus        50 ~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~-------------~~h~~~V~~v~fsp~s~~~~l~sgs~D  116 (751)
                      ...|.+|...++|.+.+ |+..+-|.++|..++.......             .-....|.++...++  |. |-.|..+
T Consensus       257 ~~~i~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~--g~-lWigt~~  332 (781)
T 3v9f_A          257 SSYIFSIKQLKDNKLWI-ATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSF--NN-IWIGTWG  332 (781)
T ss_dssp             CCCEEEEEECTTSEEEE-EESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSS--CC-EEEEEBS
T ss_pred             CceEEEEEECCCCCEEE-EeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCC--CC-EEEEecC
Confidence            35689999888887555 5554568889987654322110             113456888887776  55 4455666


Q ss_pred             CcEEEEECCCCCCCCCCCCCCCCceeec----------ccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCC
Q 004468          117 AEVRLFNLSRFSGRGLDDNAITPSALYQ----------CHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPA  186 (751)
Q Consensus       117 g~V~vwd~~~~~~~~~~~~~~~~~~~~~----------~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~  186 (751)
                      +-|..++.....           ...+.          -....|.++...+ ++ .|+.|+.++-|..||..++...   
T Consensus       333 ~Gl~~~~~~~~~-----------~~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g-~lWigt~~~Gl~~~~~~~~~~~---  396 (781)
T 3v9f_A          333 GGINFISNAPPT-----------FHTWSYSPTQMNESSLSNKVVSSVCDDG-QG-KLWIGTDGGGINVFENGKRVAI---  396 (781)
T ss_dssp             SCEEEECSSCCS-----------CEEEC----CCCSSCCSSSCEEEEEECT-TS-CEEEEEBSSCEEEEETTEEEEE---
T ss_pred             CeEEEeCCCCCc-----------ceeeccCccccccCCCCCcceEEEEEcC-CC-CEEEEeCCCcEEEEECCCCeEE---
Confidence            778888876421           11111          1235688888765 33 4678887778889987654211   


Q ss_pred             CCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCcccc
Q 004468          187 GSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNY  266 (751)
Q Consensus       187 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~  266 (751)
                                  .....       .......|.++...++ + .|.+|..++-|..||..+.+..              .
T Consensus       397 ------------~~~~~-------~~~~~~~v~~i~~d~~-g-~lWigt~~~Gl~~~~~~~~~~~--------------~  441 (781)
T 3v9f_A          397 ------------YNKEN-------RELLSNSVLCSLKDSE-G-NLWFGTYLGNISYYNTRLKKFQ--------------I  441 (781)
T ss_dssp             ------------CC------------CCCSBEEEEEECTT-S-CEEEEETTEEEEEECSSSCEEE--------------E
T ss_pred             ------------EccCC-------CCCCCcceEEEEECCC-C-CEEEEeccCCEEEEcCCCCcEE--------------E
Confidence                        00000       0012346888888763 3 4555777777889988654311              1


Q ss_pred             ccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCC
Q 004468          267 FCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG  312 (751)
Q Consensus       267 ~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~  312 (751)
                      +...     +.....|.++...++|.. .+++. +.|++||..++.
T Consensus       442 ~~~~-----~~~~~~v~~i~~d~~g~l-wigt~-~Gl~~~~~~~~~  480 (781)
T 3v9f_A          442 IELE-----KNELLDVRVFYEDKNKKI-WIGTH-AGVFVIDLASKK  480 (781)
T ss_dssp             CCST-----TTCCCCEEEEEECTTSEE-EEEET-TEEEEEESSSSS
T ss_pred             eccC-----CCCCCeEEEEEECCCCCE-EEEEC-CceEEEeCCCCe
Confidence            1000     011124899999988874 44555 679999988743

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=94.48  E-value=0.099  Score=47.81  Aligned_cols=98  Identities=17%  Similarity=0.077  Sum_probs=75.5

Q ss_pred             hhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhccccc-------chhhhHHHhhHHHhcCCCCCcchHHHHHHHHH
Q 004468          380 PYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWK-------NDAQMAIRDCYNARRIDSSSFRAHLYMSEALE  452 (751)
Q Consensus       380 ~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~-------~d~y~al~d~~~a~~~~~~~~~a~~~~~~~l~  452 (751)
                      |-.++..+..++...+..      ...+.+.+.+++..+-.       ...-.|+..+.+|+.++|....|++.+..++.
T Consensus        18 feeA~~~~~~Ai~l~P~~------aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~   91 (158)
T 1zu2_A           18 FEQIRQDAENTYKSNPLD------ADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYT   91 (158)
T ss_dssp             HHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence            556788888888877665      34566666666654321       12347899999999999999999999999999


Q ss_pred             Hhc-----------chHHHHHHHHHhcccCCCChhhhHHHHH
Q 004468          453 QLC-----------KYKEALDFAIAAQCLDPSNSVMAEKVEN  483 (751)
Q Consensus       453 ~l~-----------~~~~a~~~~~~~~~~~p~~~~~~~~~~~  483 (751)
                      .++           ++.+|+.+.++....-|.+......+..
T Consensus        92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~  133 (158)
T 1zu2_A           92 SFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEM  133 (158)
T ss_dssp             HHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            885           8999999999999999987765544443

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=94.46  E-value=0.2  Score=58.09  Aligned_cols=108  Identities=19%  Similarity=0.106  Sum_probs=90.1

Q ss_pred             CcchhHHHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCC
Q 004468          359 GLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDS  438 (751)
Q Consensus       359 ~~~~~~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~  438 (751)
                      .|.....+...+.-....|+ +..|+..|.++|...++.      ...+.+.+.++...+   +.-.|+....+|++++|
T Consensus         5 ~P~~a~al~nLG~~~~~~G~-~~eAi~~~~kAl~l~P~~------~~a~~nLg~~l~~~g---~~~eA~~~~~~Al~l~P   74 (723)
T 4gyw_A            5 CPTHADSLNNLANIKREQGN-IEEAVRLYRKALEVFPEF------AAAHSNLASVLQQQG---KLQEALMHYKEAIRISP   74 (723)
T ss_dssp             -CHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCSCC------HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCT
T ss_pred             CCCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCC
Confidence            45666777778888888888 889999999999877654      456788888887654   45678888999999999


Q ss_pred             CCcchHHHHHHHHHHhcchHHHHHHHHHhcccCCCChh
Q 004468          439 SSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSV  476 (751)
Q Consensus       439 ~~~~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~~  476 (751)
                      .+..+++.++.++..++++.+|+.++++.....|.+..
T Consensus        75 ~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~  112 (723)
T 4gyw_A           75 TFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFAD  112 (723)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence            99999999999999999999999999998888887763

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=94.39  E-value=0.44  Score=50.65  Aligned_cols=123  Identities=14%  Similarity=0.128  Sum_probs=79.2

Q ss_pred             cEEEEEECCCCCEEEEEeCCCcEEEEeCCCCe------------EEEEeccc-----CCcceEEEEEecCC-CCcEEEEE
Q 004468           52 CVNAISWNSKGSLLISGSDDTHINVWSYSSRK------------LLHSIETG-----HSANVFCTKFVPET-SDELVVSG  113 (751)
Q Consensus        52 ~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~------------~~~~l~~~-----h~~~V~~v~fsp~s-~~~~l~sg  113 (751)
                      .|..+..||+|++||..+. ..|.|-.+..+.            ....+..+     ....|..+.|+|-+ .|..|++-
T Consensus        67 ~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVL  145 (452)
T 3pbp_A           67 DTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVL  145 (452)
T ss_dssp             TTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEE
T ss_pred             ceeEEEECCCCCEEEEecC-CeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEE
Confidence            5778999999999999865 478887765221            11223212     35779999999974 24689999


Q ss_pred             ECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEe--CCCcEEEEe
Q 004468          114 AGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSAS--EDGTLRQHD  176 (751)
Q Consensus       114 s~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s--~Dg~I~iwD  176 (751)
                      -.|+.||+||+.........-........+......|.+++|.+ ++-.|+..+  +.|-|+-..
T Consensus       146 tsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~-~~lTLYvl~~t~~GDIYAlc  209 (452)
T 3pbp_A          146 KEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSK-DGLTLYCLNTTEGGDIFAFY  209 (452)
T ss_dssp             ETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECT-TSSCEEEEECTTSCEEEEES
T ss_pred             ecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcC-CCcEEEEEecCCCCCEEEEC
Confidence            99999999999963221110000000011122336788999988 666666655  778776554

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=94.35  E-value=0.26  Score=47.53  Aligned_cols=99  Identities=16%  Similarity=0.109  Sum_probs=59.6

Q ss_pred             HHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcchHHH
Q 004468          367 VEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLY  446 (751)
Q Consensus       367 ~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~a~~~  446 (751)
                      ...+...+..|. +..|+..|..++...+..      ...+.+++.++...+   +.-.|+....+++.++|.+..+++.
T Consensus         9 ~~lg~~~~~~g~-~~~A~~~~~~al~~~p~~------~~a~~~lg~~~~~~g---~~~~A~~~~~~al~~~P~~~~a~~~   78 (217)
T 2pl2_A            9 LRLGVQLYALGR-YDAALTLFERALKENPQD------PEALYWLARTQLKLG---LVNPALENGKTLVARTPRYLGGYMV   78 (217)
T ss_dssp             HHHHHHHHHTTC-HHHHHHHHHHHHTTSSSC------HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHcCC-HHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCcHHHHHH
Confidence            334444555555 666777777777655443      234455555555432   2345666666666777777777777


Q ss_pred             HHHHHHHh-----------cchHHHHHHHHHhcccCCCCh
Q 004468          447 MSEALEQL-----------CKYKEALDFAIAAQCLDPSNS  475 (751)
Q Consensus       447 ~~~~l~~l-----------~~~~~a~~~~~~~~~~~p~~~  475 (751)
                      ++.++..+           |++.+|+.++.......|...
T Consensus        79 lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~  118 (217)
T 2pl2_A           79 LSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYA  118 (217)
T ss_dssp             HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccH
Confidence            77777776           777777766666666666544

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=94.31  E-value=5  Score=41.79  Aligned_cols=112  Identities=12%  Similarity=0.020  Sum_probs=62.7

Q ss_pred             CCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCe-EEEEec--ccCCcceEEEEEecC---CCCcEEEEEEC---C----
Q 004468           50 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK-LLHSIE--TGHSANVFCTKFVPE---TSDELVVSGAG---D----  116 (751)
Q Consensus        50 ~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~-~~~~l~--~~h~~~V~~v~fsp~---s~~~~l~sgs~---D----  116 (751)
                      -...+.|+|.|+|+++++ ..++.|.+++. +++ .+..+.  .........|+|+|+   . +.++++-+.   +    
T Consensus        28 l~~P~~ia~~pdG~l~V~-e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~-g~lyv~~~~~~~~~~~~  104 (354)
T 3a9g_A           28 LEVPWSIAPLGGGRYLVT-ERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKK-SWVYLYASYFAEGGHIR  104 (354)
T ss_dssp             CSCEEEEEEEETTEEEEE-ETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTS-CEEEEEEEEECGGGCEE
T ss_pred             CCCCeEEEEcCCCeEEEE-eCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcC-CEEEEEEeccCCCCCcc
Confidence            345789999999986665 45699999974 454 222221  122356899999996   3 455555442   3    


Q ss_pred             CcEEEEECCCCCCCCCCCCCCCCc-eeec-ccCCceeEEEEecCCCCEEEEEeC
Q 004468          117 AEVRLFNLSRFSGRGLDDNAITPS-ALYQ-CHTRRVKKLAVEVGNPHVVWSASE  168 (751)
Q Consensus       117 g~V~vwd~~~~~~~~~~~~~~~~~-~~~~-~h~~~V~~l~~sp~~~~~l~s~s~  168 (751)
                      ..|..|+.........   ..+.+ ..+. ........|+|.| ++.++++.+.
T Consensus       105 ~~v~r~~~~~~~~~~~---~~~~l~~~~~~~~~h~~~~l~~~p-DG~Lyvt~G~  154 (354)
T 3a9g_A          105 NRVIRGRLDGSTFKLK---EVKTLIDGIPGAYIHNGGRIRFGP-DGMLYITTGD  154 (354)
T ss_dssp             EEEEEEEECSSSCCEE---EEEEEEEEEECCSSCCCCCEEECT-TSCEEEECCC
T ss_pred             eEEEEEEECCCCcCcC---ccEEEEEcCCCCCCcCCceEEECC-CCcEEEEECC
Confidence            5677777653211000   00111 1121 1112346799999 5677776543

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=94.11  E-value=0.18  Score=55.39  Aligned_cols=97  Identities=15%  Similarity=0.078  Sum_probs=80.2

Q ss_pred             hcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcchHHHHHHHHHHh
Q 004468          375 EEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQL  454 (751)
Q Consensus       375 ~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~a~~~~~~~l~~l  454 (751)
                      ..|+ |..|+..|.+++...+..      ...+.++|.++...+   +.-.|+..+.+|++++|.+..+++.++.++..+
T Consensus        18 ~~g~-~~~A~~~~~~Al~~~p~~------~~~~~~lg~~~~~~g---~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~   87 (477)
T 1wao_1           18 KAKD-YENAIKFYSQAIELNPSN------AIYYGNRSLAYLRTE---CYGYALGDATRAIELDKKYIKGYYRRAASNMAL   87 (477)
T ss_dssp             TTTC-HHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred             HhCC-HHHHHHHHHHHHHhCCcc------HHHHHHHHHHHHHhc---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            3444 889999999999877654      457788888888754   355789999999999999999999999999999


Q ss_pred             cchHHHHHHHHHhcccCCCChhhhHHH
Q 004468          455 CKYKEALDFAIAAQCLDPSNSVMAEKV  481 (751)
Q Consensus       455 ~~~~~a~~~~~~~~~~~p~~~~~~~~~  481 (751)
                      +++.+|..++++.....|........+
T Consensus        88 g~~~eA~~~~~~al~~~p~~~~~~~~l  114 (477)
T 1wao_1           88 GKFRAALRDYETVVKVKPHDKDAKMKY  114 (477)
T ss_dssp             TCHHHHHHHHHHHHHHSTTCTTHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            999999999999988888776543333

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=94.00  E-value=0.52  Score=45.27  Aligned_cols=104  Identities=13%  Similarity=-0.021  Sum_probs=85.2

Q ss_pred             HHHHHHHHHhhhcCCChhHHHHHhHHHHhccc-CCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcc
Q 004468          364 RMLVEIARNSLEEGKHPYYGIEACNEVLEGHL-SGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFR  442 (751)
Q Consensus       364 ~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~-~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~  442 (751)
                      ..+...+...+..|+ |..|+..+..++...+ ..      ...+.+++..+...+   +.-.|+....+++.++|....
T Consensus         8 ~~~~~~g~~~~~~~~-~~~A~~~~~~al~~~~~~~------~~~~~~~~~~~~~~~---~~~~A~~~~~~al~~~p~~~~   77 (228)
T 4i17_A            8 NQLKNEGNDALNAKN-YAVAFEKYSEYLKLTNNQD------SVTAYNCGVCADNIK---KYKEAADYFDIAIKKNYNLAN   77 (228)
T ss_dssp             HHHHHHHHHHHHTTC-HHHHHHHHHHHHHHTTTCC------HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTTCSHHH
T ss_pred             HHHHHHHHHHHHccC-HHHHHHHHHHHHhccCCCC------cHHHHHHHHHHHHhh---cHHHHHHHHHHHHHhCcchHH
Confidence            445667777778888 9999999999998765 22      245556777777644   456789999999999999999


Q ss_pred             hHHHHHHHHHHhcchHHHHHHHHHhcccCCCChhh
Q 004468          443 AHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVM  477 (751)
Q Consensus       443 a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~~~  477 (751)
                      +++.++.++..++++.+|..++.......|.....
T Consensus        78 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~  112 (228)
T 4i17_A           78 AYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATI  112 (228)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHH
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHH
Confidence            99999999999999999999999999999986643

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=93.98  E-value=3.7  Score=42.83  Aligned_cols=202  Identities=11%  Similarity=0.117  Sum_probs=108.5

Q ss_pred             EEEEEECCCCCEEEEEe------------CCCcEEEEeCCC--CeE-EEEeccc-----CCcceEEEEEecCCCCc--EE
Q 004468           53 VNAISWNSKGSLLISGS------------DDTHINVWSYSS--RKL-LHSIETG-----HSANVFCTKFVPETSDE--LV  110 (751)
Q Consensus        53 V~~l~~s~dg~~LaSgs------------~Dg~I~IWd~~~--~~~-~~~l~~~-----h~~~V~~v~fsp~s~~~--~l  110 (751)
                      .-.|...|+|..+++++            .+|.|.++|+.+  ++. ...+ .+     .......+.+.++.++.  ++
T Consensus        52 ~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~-~g~~~~~~~f~PhGi~~~~d~dg~~~L~  130 (355)
T 3sre_A           52 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEI-IGNTLDISSFNPHGISTFIDDDNTVYLL  130 (355)
T ss_dssp             CCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEE-ECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred             cceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEc-cCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence            34666788887666652            789999999873  222 1122 22     23467788887742233  44


Q ss_pred             EEEEC--CCcEEEEECCCCCCCCCCCCCCCCceeeccc-CCceeEEEEecCCCCEEEEEeC---C--------------C
Q 004468          111 VSGAG--DAEVRLFNLSRFSGRGLDDNAITPSALYQCH-TRRVKKLAVEVGNPHVVWSASE---D--------------G  170 (751)
Q Consensus       111 ~sgs~--Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~l~~sp~~~~~l~s~s~---D--------------g  170 (751)
                      ++-..  +.+|.||++.......      ..+..+.+. -...+.+.+.+ ++.++++...   |              |
T Consensus       131 Vvnh~~~~s~ielf~~d~~~~~~------~~~~~~~g~~~~~pND~~v~~-~G~fyvt~~~~ftd~~~~~~e~~~~~~~g  203 (355)
T 3sre_A          131 VVNHPGSSSTVEVFKFQEEEKSL------LHLKTIRHKLLPSVNDIVAVG-PEHFYATNDHYFIDPYLKSWEMHLGLAWS  203 (355)
T ss_dssp             EEECSTTCCEEEEEEEETTTTEE------EEEEEECCTTCSSEEEEEEEE-TTEEEEEESCSCSSHHHHHHHHHTTCCCE
T ss_pred             EEECCCCCCeEEEEEEECCCCEE------EEEeccccCCCCCCceEEEeC-CCCEEecCCcEeCCcccccchhhccCCcc
Confidence            44333  5788898887532211      223333332 23578888888 5566655431   1              2


Q ss_pred             cEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCC
Q 004468          171 TLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPP  250 (751)
Q Consensus       171 ~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~  250 (751)
                      .|..+|.  ++           + .++.+              .-...+.++|+|++..++++-+..+.|..|++.....
T Consensus       204 ~vyr~d~--~~-----------~-~~~~~--------------~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~  255 (355)
T 3sre_A          204 FVTYYSP--ND-----------V-RVVAE--------------GFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWT  255 (355)
T ss_dssp             EEEEECT--TC-----------C-EEEEE--------------EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSC
T ss_pred             EEEEEEC--Ce-----------E-EEeec--------------CCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCc
Confidence            2222222  10           0 11110              1234688999996434555555678999999863211


Q ss_pred             ccccCCCCCCCCccccccccccccCCccccceEEEEEcC-CCCEEEEEeCC-CcEEEEECC
Q 004468          251 LTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP-NGEEVLLSYSG-EHVYLMDVN  309 (751)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fsp-dg~~Ll~~s~d-~~I~lwdl~  309 (751)
                      +..          .+.+   .+      ....-.+++++ +|++.+++..+ +.|..|+..
T Consensus       256 l~~----------~~~~---~~------~g~PDGi~vD~e~G~lwva~~~~g~~v~~~~P~  297 (355)
T 3sre_A          256 LTP----------LRVL---SF------DTLVDNISVDPVTGDLWVGCHPNGMRIFFYDAE  297 (355)
T ss_dssp             EEE----------EEEE---EC------SSEEEEEEECTTTCCEEEEEESCHHHHHSCCTT
T ss_pred             Eec----------CEEE---eC------CCCCceEEEeCCCCcEEEEecCCceEEEEECCC
Confidence            110          1111   01      11367899999 59877766533 455555443

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=93.96  E-value=7.7  Score=41.32  Aligned_cols=234  Identities=10%  Similarity=0.124  Sum_probs=129.3

Q ss_pred             EEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCC
Q 004468           56 ISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDN  135 (751)
Q Consensus        56 l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~  135 (751)
                      .-.+|..+.||-=. ..++.|+|+++...+..+ . ....|.-=+|...   +.|+-. .+..|+.|++...        
T Consensus        71 AIMnP~~~iiALra-g~~lQiFnle~K~klks~-~-~~e~VvfWkWis~---~~l~lV-T~taVyHWsi~~~--------  135 (494)
T 1bpo_A           71 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAH-T-MTDDVTFWKWISL---NTVALV-TDNAVYHWSMEGE--------  135 (494)
T ss_dssp             EEECSSSSCEEEEE-TTEEEEEETTTTEEEEEE-E-CSSCCCEEEEEET---TEEEEE-CSSEEEEEESSSS--------
T ss_pred             eeeCCCCcEEEEec-CCeEEEEchHHhhhhcce-e-cCCCceEEEecCC---CeEEEE-cCCeeEEecccCC--------
Confidence            34567777777665 579999999998888877 2 2446777788766   344443 3578999999742        


Q ss_pred             CCCCceeecccC----CceeEEEEecCCCCEEEEEe------CCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCce
Q 004468          136 AITPSALYQCHT----RRVKKLAVEVGNPHVVWSAS------EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAK  205 (751)
Q Consensus       136 ~~~~~~~~~~h~----~~V~~l~~sp~~~~~l~s~s------~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~  205 (751)
                       ..|.+.+..|.    ..|..-..+++...++++|-      -.|.+.+|..+....             ..++-..+..
T Consensus       136 -s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~s-------------Q~ieGhaa~F  201 (494)
T 1bpo_A          136 -SQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS-------------QPIEGHAASF  201 (494)
T ss_dssp             -CCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCE-------------EEECCSEEEE
T ss_pred             -CCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccccc-------------chheeeeeee
Confidence             25677776664    34555566674433444442      236677787765531             1111110000


Q ss_pred             ecccC-CCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCC-CccccCCCCCCCCccccccccccccCCccccceE
Q 004468          206 RSLAD-PPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLP-PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLT  283 (751)
Q Consensus       206 ~~~~~-~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt  283 (751)
                      ..+.. ...+...+.|++....         ..+.++|.++.... ....++     .+.+..+.|.    ....+. .-
T Consensus       202 ~~~~~~g~~~~~~lf~fa~r~~---------~g~kLhi~Ei~~~~~~~~~f~-----kk~vdv~fpp----e~~~DF-Pv  262 (494)
T 1bpo_A          202 AQFKMEGNAEESTLFCFAVRGQ---------AGGKLHIIEVGTPPTGNQPFP-----KKAVDVFFPP----EAQNDF-PV  262 (494)
T ss_dssp             EEEECTTCSSEEEEEEEEECST---------TCCEEEEEECSCCCTTCCCCC-----CEEEECCCCT----TSTTCC-EE
T ss_pred             EEEecCCCCCCceEEEEEEecC---------CCcEEEEEEcCCCccCCCCcc-----ceeeeeeCCc----ccccCc-ee
Confidence            00000 0011122333333221         13788999885431 111110     0112222222    112233 45


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECCCCCcceeeeecCCCceeEEeCCCCCCcc
Q 004468          284 HVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLE  337 (751)
Q Consensus       284 ~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp~~~~~~  337 (751)
                      ++..|+.-..+..-+.-|.|++||+.++...-...-..+.+-..+......|+.
T Consensus       263 amqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~  316 (494)
T 1bpo_A          263 AMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGII  316 (494)
T ss_dssp             EEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEE
T ss_pred             EEEecccCCEEEEEecCceEEEEecccceeeeeecccCCceEEecccCCCCcEE
Confidence            788999989999999999999999999865444444444554444444444443

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=93.87  E-value=0.059  Score=45.05  Aligned_cols=83  Identities=13%  Similarity=0.137  Sum_probs=39.5

Q ss_pred             HHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCC------
Q 004468          367 VEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSS------  440 (751)
Q Consensus       367 ~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~------  440 (751)
                      ...+...+..|+ |..|+..|..++...+..      ...+.+++.++...+   +.-.|+..+.+++.++|.+      
T Consensus         8 ~~~g~~~~~~~~-~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~   77 (111)
T 2l6j_A            8 KEQGNSLFKQGL-YREAVHCYDQLITAQPQN------PVGYSNKAMALIKLG---EYTQAIQMCQQGLRYTSTAEHVAIR   77 (111)
T ss_dssp             HHHHHHHHTTTC-HHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTT---CHHHHHHHHHHHHTSCSSTTSHHHH
T ss_pred             HHHHHHHHHcCC-HHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHhc---CHHHHHHHHHHHHHhCCCccHHHHH
Confidence            344444444555 556666666655544332      223344444444332   2233455555555555555      


Q ss_pred             cchHHHHHHHHHHhcchHH
Q 004468          441 FRAHLYMSEALEQLCKYKE  459 (751)
Q Consensus       441 ~~a~~~~~~~l~~l~~~~~  459 (751)
                      .+++++++.++..++.+.+
T Consensus        78 ~~~~~~~~~~~~~~~~~~~   96 (111)
T 2l6j_A           78 SKLQYRLELAQGAVGSVQI   96 (111)
T ss_dssp             HHHHHHHHHHHHHHHCCCC
T ss_pred             HHHHHHHHHHHHHHHhHhh
Confidence            4455555555555544333

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=93.87  E-value=0.44  Score=40.47  Aligned_cols=100  Identities=13%  Similarity=0.130  Sum_probs=76.8

Q ss_pred             HHHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCC---
Q 004468          364 RMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSS---  440 (751)
Q Consensus       364 ~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~---  440 (751)
                      ..+...+......+. +..|+..+..++...+..      ...+.+.+..+...   ++.-.|+..+..++.+.|..   
T Consensus         5 ~~~~~l~~~~~~~~~-~~~A~~~~~~a~~~~~~~------~~~~~~la~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~   74 (131)
T 1elr_A            5 LKEKELGNDAYKKKD-FDTALKHYDKAKELDPTN------MTYITNQAAVYFEK---GDYNKCRELCEKAIEVGRENRED   74 (131)
T ss_dssp             HHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHH---TCHHHHHHHHHHHHHHHHHSTTC
T ss_pred             HHHHHHHHHHHHhcC-HHHHHHHHHHHHhcCCcc------HHHHHHHHHHHHHh---ccHHHHHHHHHHHHhhccccchh
Confidence            344555666666777 889999999999876543      34556667666653   34556788888888888876   


Q ss_pred             ----cchHHHHHHHHHHhcchHHHHHHHHHhcccCCC
Q 004468          441 ----FRAHLYMSEALEQLCKYKEALDFAIAAQCLDPS  473 (751)
Q Consensus       441 ----~~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~  473 (751)
                          ..+++.++.++..++++.+|..++.......|.
T Consensus        75 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~  111 (131)
T 1elr_A           75 YRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT  111 (131)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence                889999999999999999999999998887773

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=93.78  E-value=2.2  Score=43.02  Aligned_cols=64  Identities=11%  Similarity=0.173  Sum_probs=35.7

Q ss_pred             CCCEEEEEeCC-----CcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCC-----cEEEEECCCC
Q 004468           61 KGSLLISGSDD-----THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA-----EVRLFNLSRF  127 (751)
Q Consensus        61 dg~~LaSgs~D-----g~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg-----~V~vwd~~~~  127 (751)
                      ++.+++.|+.+     ..+.+||+.+.+....-.......-.++... +  +.+++.|+.++     .+.+||+.+.
T Consensus        61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~--~~iyv~GG~~~~~~~~~~~~~d~~~~  134 (302)
T 2xn4_A           61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL-N--GLLYAVGGFDGSTGLSSVEAYNIKSN  134 (302)
T ss_dssp             TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-T--TEEEEEEEECSSCEEEEEEEEETTTT
T ss_pred             CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE-C--CEEEEEcCCCCCccCceEEEEeCCCC
Confidence            67777887754     3588899887653322111111111222222 3  57777777653     4778888753

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=93.77  E-value=1.9  Score=45.13  Aligned_cols=29  Identities=14%  Similarity=0.318  Sum_probs=24.8

Q ss_pred             eEEEEEcCCCCEEEEEe-CCCcEEEEECCC
Q 004468          282 LTHVTFSPNGEEVLLSY-SGEHVYLMDVNH  310 (751)
Q Consensus       282 vt~v~fspdg~~Ll~~s-~d~~I~lwdl~~  310 (751)
                      .+.++|||||+.|+++. ..+.|+.|++..
T Consensus       223 pNGia~spDg~~lYvadt~~~~I~~~~~~~  252 (355)
T 3sre_A          223 ANGINISPDGKYVYIAELLAHKIHVYEKHA  252 (355)
T ss_dssp             EEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred             cCcceECCCCCEEEEEeCCCCeEEEEEECC
Confidence            68899999999887765 478999999975

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=93.75  E-value=0.26  Score=40.60  Aligned_cols=95  Identities=11%  Similarity=-0.015  Sum_probs=74.0

Q ss_pred             HHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCC--CcchHHH
Q 004468          369 IARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSS--SFRAHLY  446 (751)
Q Consensus       369 ~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~--~~~a~~~  446 (751)
                      .+......+. +..|+..+..++...+..      ...+.+.+.++...+   +.-.|+....+++.++|.  ...+++.
T Consensus        12 ~~~~~~~~~~-~~~A~~~~~~a~~~~~~~------~~~~~~~a~~~~~~~---~~~~A~~~~~~a~~~~~~~~~~~~~~~   81 (112)
T 2kck_A           12 EGVLQYDAGN-YTESIDLFEKAIQLDPEE------SKYWLMKGKALYNLE---RYEEAVDCYNYVINVIEDEYNKDVWAA   81 (112)
T ss_dssp             HHHHHHSSCC-HHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred             HHHHHHHhhh-HHHHHHHHHHHHHhCcCC------HHHHHHHHHHHHHcc---CHHHHHHHHHHHHHhCcccchHHHHHH
Confidence            3444555566 888999999998866543      335566777766543   345678888899999999  9999999


Q ss_pred             HHHHHHHh-cchHHHHHHHHHhcccCCC
Q 004468          447 MSEALEQL-CKYKEALDFAIAAQCLDPS  473 (751)
Q Consensus       447 ~~~~l~~l-~~~~~a~~~~~~~~~~~p~  473 (751)
                      ++.++..+ +++.+|..++..+....|.
T Consensus        82 l~~~~~~~~~~~~~A~~~~~~~~~~~p~  109 (112)
T 2kck_A           82 KADALRYIEGKEVEAEIAEARAKLEHHH  109 (112)
T ss_dssp             HHHHHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHhhcccC
Confidence            99999999 9999999999988887774

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=93.62  E-value=6  Score=39.80  Aligned_cols=64  Identities=8%  Similarity=0.176  Sum_probs=37.1

Q ss_pred             CCCEEEEEeCC----CcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECC------CcEEEEECCCC
Q 004468           61 KGSLLISGSDD----THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD------AEVRLFNLSRF  127 (751)
Q Consensus        61 dg~~LaSgs~D----g~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~D------g~V~vwd~~~~  127 (751)
                      ++.+++.|+.+    ..+.+||+.+.+....-.......-.++... +  +.+++.|+.+      ..+.+||+.+.
T Consensus        55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~--~~iyv~GG~~~~~~~~~~~~~~d~~~~  128 (306)
T 3ii7_A           55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA-E--GKIYTSGGSEVGNSALYLFECYDTRTE  128 (306)
T ss_dssp             TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE-T--TEEEEECCBBTTBSCCCCEEEEETTTT
T ss_pred             CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE-C--CEEEEECCCCCCCcEeeeEEEEeCCCC
Confidence            66788888755    5688899887654322111111111122222 3  5777887765      45888898764

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=93.55  E-value=3.2  Score=41.73  Aligned_cols=147  Identities=15%  Similarity=0.179  Sum_probs=73.8

Q ss_pred             CCCEEEEEeCC-----CcEEEEeCCCCe-----EEEEecccCCcceEEEEEecCCCCcEEEEEECC-----CcEEEEECC
Q 004468           61 KGSLLISGSDD-----THINVWSYSSRK-----LLHSIETGHSANVFCTKFVPETSDELVVSGAGD-----AEVRLFNLS  125 (751)
Q Consensus        61 dg~~LaSgs~D-----g~I~IWd~~~~~-----~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~D-----g~V~vwd~~  125 (751)
                      ++.+++.|+.+     ..+.+||+.+.+     .+..+. ..... .++... +  +.+++.|+.+     ..+.+||+.
T Consensus        62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p-~~r~~-~~~~~~-~--~~lyv~GG~~~~~~~~~~~~~d~~  136 (301)
T 2vpj_A           62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMN-VRRGL-AGATTL-G--DMIYVSGGFDGSRRHTSMERYDPN  136 (301)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCS-SCCBS-CEEEEE-T--TEEEEECCBCSSCBCCEEEEEETT
T ss_pred             CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCC-CCccc-eeEEEE-C--CEEEEEcccCCCcccceEEEEcCC
Confidence            56778888754     458899987654     332221 11111 122222 3  5777777654     357888887


Q ss_pred             CCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCC-----cEEEEecCCCCCCCCCCCCCCccceEEEec
Q 004468          126 RFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG-----TLRQHDFRQGSSCPPAGSSHQECRNILLDL  200 (751)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg-----~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~  200 (751)
                      +..-        ..+..+...... .+++. . ++.+++.|+.++     .+.+||+.+.+                   
T Consensus       137 ~~~W--------~~~~~~p~~r~~-~~~~~-~-~~~iyv~GG~~~~~~~~~~~~~d~~~~~-------------------  186 (301)
T 2vpj_A          137 IDQW--------SMLGDMQTAREG-AGLVV-A-SGVIYCLGGYDGLNILNSVEKYDPHTGH-------------------  186 (301)
T ss_dssp             TTEE--------EEEEECSSCCBS-CEEEE-E-TTEEEEECCBCSSCBCCCEEEEETTTTE-------------------
T ss_pred             CCeE--------EECCCCCCCccc-ceEEE-E-CCEEEEECCCCCCcccceEEEEeCCCCc-------------------
Confidence            5321        111111111111 11222 2 557777777653     46667765542                   


Q ss_pred             ccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCC-----CeEEEEeCCCCC
Q 004468          201 RCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD-----AFARLYDRRMLP  249 (751)
Q Consensus       201 ~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D-----~~IriwD~~~~~  249 (751)
                          ...+...+........+.+   ++.+++.|+.+     ..|.+||+.+.+
T Consensus       187 ----W~~~~~~p~~r~~~~~~~~---~~~i~v~GG~~~~~~~~~v~~yd~~~~~  233 (301)
T 2vpj_A          187 ----WTNVTPMATKRSGAGVALL---NDHIYVVGGFDGTAHLSSVEAYNIRTDS  233 (301)
T ss_dssp             ----EEEECCCSSCCBSCEEEEE---TTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred             ----EEeCCCCCcccccceEEEE---CCEEEEEeCCCCCcccceEEEEeCCCCc
Confidence                1111111111122222222   35777887764     468899987653

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=93.40  E-value=1.3  Score=48.54  Aligned_cols=177  Identities=11%  Similarity=0.078  Sum_probs=94.0

Q ss_pred             ceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecc----cCCceeEEEE-------ecCCCCEE
Q 004468           95 NVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQC----HTRRVKKLAV-------EVGNPHVV  163 (751)
Q Consensus        95 ~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~----h~~~V~~l~~-------sp~~~~~l  163 (751)
                      ....|+|.|...+.++++-...+.|++.|+....           +..+..    .......|+|       ++++..++
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~-----------v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~ly  208 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRM-----------LSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMI  208 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTE-----------EEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEE
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCE-----------EEEEEccCccccCCCcEEEEeecccccCCCCCEEE
Confidence            3568999983214556665555778888888531           333221    2235889999       98543355


Q ss_pred             EEEeCCCc------EEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCC
Q 004468          164 WSASEDGT------LRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD  237 (751)
Q Consensus       164 ~s~s~Dg~------I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D  237 (751)
                      ++...++.      |.+++........    ..... ..+-.               ......++++|.++.++++-..+
T Consensus       209 vad~~~~~~~~~~~V~~i~r~~~G~~~----~~~~~-~~v~~---------------~~~p~giavdp~~g~LYvtd~~~  268 (496)
T 3kya_A          209 VAIDYDGKGDESPSVYIIKRNADGTFD----DRSDI-QLIAA---------------YKQCNGATIHPINGELYFNSYEK  268 (496)
T ss_dssp             EEECCCTTGGGEEEEEEEECCTTSCCS----TTSCE-EEEEE---------------ESCCCCEEECTTTCCEEEEETTT
T ss_pred             EEeCCCCCcccCceEEEEecCCCCcee----ecccc-eeecc---------------CCCceEEEEcCCCCeEEEEECCC
Confidence            55444422      5566522211000    00000 01110               11345678899777888888888


Q ss_pred             CeEEEEeCC-------CCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEE-eCCCcEEEEECC
Q 004468          238 AFARLYDRR-------MLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLS-YSGEHVYLMDVN  309 (751)
Q Consensus       238 ~~IriwD~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~-s~d~~I~lwdl~  309 (751)
                      +.|..+|+.       +...-.... ...+. ....+.  .   .+. ....+.|+|+|+|++|+++ +..+.|+.++.+
T Consensus       269 g~V~r~d~~~~~~~~~tg~~~tp~~-~~~~g-~~~~l~--~---~~~-~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~d  340 (496)
T 3kya_A          269 GQVFRLDLVDYFKTIKNGGSWDPIV-KNNPN-TFKQLF--T---IAD-PSWEFQIFIHPTGKYAYFGVINNHYFMRSDYD  340 (496)
T ss_dssp             TEEEEECHHHHHHHHHTTCCCCCBG-GGCTT-TEEEEE--E---CSS-SSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             CEEEEEecccccccccCceeecccc-ccccc-ccceeE--e---cCC-CCCceEEEEcCCCCEEEEEeCCCCEEEEEecC
Confidence            999999987       332100000 00000 000000  0   011 1136789999999965555 557899997765


Q ss_pred             C
Q 004468          310 H  310 (751)
Q Consensus       310 ~  310 (751)
                      .
T Consensus       341 g  341 (496)
T 3kya_A          341 E  341 (496)
T ss_dssp             T
T ss_pred             C
Confidence            4

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=93.25  E-value=0.8  Score=41.89  Aligned_cols=108  Identities=11%  Similarity=0.037  Sum_probs=81.3

Q ss_pred             cchhHHHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHH-hhcc-cccchhhhHHHhhHHHhcCC
Q 004468          360 LGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAAL-LLKR-KWKNDAQMAIRDCYNARRID  437 (751)
Q Consensus       360 ~~~~~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~-~~~r-~w~~d~y~al~d~~~a~~~~  437 (751)
                      +.....+...+......|. +..|+..|..++...+..      ...+.+.+.+ +... .+.  .-.|+....+++.++
T Consensus        41 p~~~~~~~~lg~~~~~~~~-~~~A~~~~~~al~~~p~~------~~~~~~la~~l~~~~~~~~--~~~A~~~~~~al~~~  111 (177)
T 2e2e_A           41 PQNSEQWALLGEYYLWQND-YSNSLLAYRQALQLRGEN------AELYAALATVLYYQASQHM--TAQTRAMIDKALALD  111 (177)
T ss_dssp             CSCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHCSC------HHHHHHHHHHHHHHTTTCC--CHHHHHHHHHHHHHC
T ss_pred             CCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHhcCCcc--hHHHHHHHHHHHHhC
Confidence            3334445556666666777 889999999999876554      3355566666 4332 221  146788888999999


Q ss_pred             CCCcchHHHHHHHHHHhcchHHHHHHHHHhcccCCCChh
Q 004468          438 SSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSV  476 (751)
Q Consensus       438 ~~~~~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~~  476 (751)
                      |.+..+++.++.++..++++.+|..++.......|....
T Consensus       112 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  150 (177)
T 2e2e_A          112 SNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRIN  150 (177)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSC
T ss_pred             CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCcc
Confidence            999999999999999999999999999999988887654

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=93.14  E-value=7.6  Score=39.76  Aligned_cols=158  Identities=13%  Similarity=0.114  Sum_probs=87.4

Q ss_pred             cCCCcEEEEEECCCCCEEEEEeCCCcEEEEeC--CCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECC
Q 004468           48 GHQGCVNAISWNSKGSLLISGSDDTHINVWSY--SSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLS  125 (751)
Q Consensus        48 gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~--~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~  125 (751)
                      ++...+..+.+.+++.+++.+...+..+-+|-  .+.+.+.   ......+..+.+.|+  +.++ .++.+|.+++.+..
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~~---~~~~~~~~~~~~~~~--g~~~-~~~~~G~~~~s~~D  233 (327)
T 2xbg_A          160 EAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPHN---RTTSRRLHNMGFTPD--GRLW-MIVNGGKIAFSDPD  233 (327)
T ss_dssp             SCCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEEE---CCSSSCEEEEEECTT--SCEE-EEETTTEEEEEETT
T ss_pred             CCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeECC---CCCCCccceeEECCC--CCEE-EEeCCceEEEecCC
Confidence            45667899999999998877755444444553  2333332   345678899999887  5555 44567888777422


Q ss_pred             CCCCCCCCCCCCCCceee-cccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCc
Q 004468          126 RFSGRGLDDNAITPSALY-QCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGA  204 (751)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~-~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~  204 (751)
                      .+  ...     ..+..- ..+...+..+++.+ ++.+++. +.+|.|. +....++.=               .     
T Consensus       234 ~G--~tW-----~~~~~~~~~~~~~~~~v~~~~-~~~~~~~-g~~g~i~-~S~DgG~tW---------------~-----  283 (327)
T 2xbg_A          234 NS--ENW-----GELLSPLRRNSVGFLDLAYRT-PNEVWLA-GGAGALL-CSQDGGQTW---------------Q-----  283 (327)
T ss_dssp             EE--EEE-----CCCBCTTSSCCSCEEEEEESS-SSCEEEE-ESTTCEE-EESSTTSSC---------------E-----
T ss_pred             CC--Cee-----EeccCCcccCCcceEEEEecC-CCEEEEE-eCCCeEE-EeCCCCccc---------------E-----
Confidence            11  000     001100 01223578888887 5566554 4567763 333333210               0     


Q ss_pred             eecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeC
Q 004468          205 KRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDR  245 (751)
Q Consensus       205 ~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~  245 (751)
                        .+.........+.++.|.+  ...+++++.+|.|.-++-
T Consensus       284 --~~~~~~~~~~~~~~v~~~~--~~~~~~~G~~G~i~~~~~  320 (327)
T 2xbg_A          284 --QDVDVKKVPSNFYKILFFS--PDQGFILGQKGILLRYVT  320 (327)
T ss_dssp             --ECGGGTTSSSCCCEEEEEE--TTEEEEECSTTEEEEECC
T ss_pred             --EcCccCCCCCCeEEEEEEC--CCceEEEcCCceEEEEcC
Confidence              0000000123466777764  245677778898877764

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=93.11  E-value=4.6  Score=42.90  Aligned_cols=168  Identities=13%  Similarity=0.063  Sum_probs=89.2

Q ss_pred             CcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeeccc----CCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCC
Q 004468          107 DELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCH----TRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSS  182 (751)
Q Consensus       107 ~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h----~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~  182 (751)
                      |..++.+ .++.||.-++....          .-+.+...    -..|..+..+| +|.+|+..+. .+|.+-.+-.+..
T Consensus        32 ~t~i~~a-~~n~iR~~~i~~~~----------~Yk~L~~~~~i~f~~i~qlvlSp-sG~lLAl~g~-~~V~Vv~LP~~~~   98 (452)
T 3pbp_A           32 GTRIVFI-QDNIIRWYNVLTDS----------LYHSLNFSRHLVLDDTFHVISST-SGDLLCLFND-NEIFVMEVPWGYS   98 (452)
T ss_dssp             TTEEEEE-ETTEEEEEETTTCS----------SCEEEECTTTCCCCTTCEEEECT-TSSEEEEECS-SEEEEEECCTTCS
T ss_pred             CCEEEEE-ECCEEEEEECCCCC----------cceEEecCcccccCceeEEEECC-CCCEEEEecC-CeEEEEEecCccc
Confidence            3444443 34777877776321          12222221    22577899999 7788877655 6888888874332


Q ss_pred             CCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCC--CcEEEEEeCCCeEEEEeCCCCCCcc-ccCCCCC
Q 004468          183 CPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTR--PHLLLVGGSDAFARLYDRRMLPPLT-SCQKRMS  259 (751)
Q Consensus       183 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~--~~~l~sgs~D~~IriwD~~~~~~~~-~~~~~~~  259 (751)
                      ...............+.+..-       .......|..+.|+|-.  +..|++-..|+.||+||+....... .+.   .
T Consensus        99 ~~~~~~~~~~~q~~ty~l~~~-------~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~---k  168 (452)
T 3pbp_A           99 NVEDVSIQDAFQIFHYSIDEE-------EVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLN---K  168 (452)
T ss_dssp             CCCCHHHHHTTEEEEEEGGGC-------C--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEES---C
T ss_pred             cCcccccccccceeEEEcCCc-------ccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchh---c
Confidence            111000001111122222110       01125679999999964  3489999999999999998622110 110   0


Q ss_pred             CCCccccccccccccCCccccceEEEEEcCCCCEEEEEe--CCCcEEEE
Q 004468          260 PPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSY--SGEHVYLM  306 (751)
Q Consensus       260 ~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s--~d~~I~lw  306 (751)
                         ....|..     .... ..|.+++|.++|-.|.+.+  .+|.||-.
T Consensus       169 ---~~~~fg~-----d~~~-~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          169 ---PNNSFGL-----DARV-NDITDLEFSKDGLTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             ---CCSEEES-----CSSC-CCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred             ---cccccCC-----Cccc-ceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence               0011100     0111 2489999999776666544  44554433

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=92.57  E-value=1.9  Score=35.84  Aligned_cols=102  Identities=22%  Similarity=0.216  Sum_probs=77.7

Q ss_pred             HHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcchH
Q 004468          365 MLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAH  444 (751)
Q Consensus       365 ~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~a~  444 (751)
                      .+...+......+. +..++..+.+++...+..      ...+...+..+...   ++.-.|+.....++.++|....++
T Consensus        11 ~~~~~~~~~~~~~~-~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~   80 (125)
T 1na0_A           11 AWYNLGNAYYKQGD-YDEAIEYYQKALELDPNN------AEAWYNLGNAYYKQ---GDYDEAIEYYQKALELDPNNAEAW   80 (125)
T ss_dssp             HHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHHHHcCC-HHHHHHHHHHHHHHCcCc------HHHHHHHHHHHHHh---CCHHHHHHHHHHHHHhCCccHHHH
Confidence            34445555666666 888999999998865433      23455566666554   345567777888899999999999


Q ss_pred             HHHHHHHHHhcchHHHHHHHHHhcccCCCChh
Q 004468          445 LYMSEALEQLCKYKEALDFAIAAQCLDPSNSV  476 (751)
Q Consensus       445 ~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~~  476 (751)
                      +.++.++..++++.+|..++.......|....
T Consensus        81 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~  112 (125)
T 1na0_A           81 YNLGNAYYKQGDYDEAIEYYQKALELDPNNAE  112 (125)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHH
Confidence            99999999999999999999988888886554

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=92.56  E-value=0.15  Score=43.61  Aligned_cols=91  Identities=9%  Similarity=0.064  Sum_probs=68.6

Q ss_pred             hhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcchHHHHHHHHHHhcchHH
Q 004468          380 PYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKE  459 (751)
Q Consensus       380 ~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~a~~~~~~~l~~l~~~~~  459 (751)
                      +..|+..|.+++.....   .+-....+.+.+.++...+   +.-.|+....+++.++|.+..+++.++.++..+|++.+
T Consensus         6 ~~~A~~~~~~al~~~~~---~p~~~~~~~~lg~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~   79 (117)
T 3k9i_A            6 EAQAVPYYEKAIASGLQ---GKDLAECYLGLGSTFRTLG---EYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQ   79 (117)
T ss_dssp             -CCCHHHHHHHHSSCCC---HHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHHHHHHHHHHcCCC---CccHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHH
Confidence            45677788888874211   1112345667777766544   34568888999999999999999999999999999999


Q ss_pred             HHHHHHHhcccCCCChh
Q 004468          460 ALDFAIAAQCLDPSNSV  476 (751)
Q Consensus       460 a~~~~~~~~~~~p~~~~  476 (751)
                      |..++.......|....
T Consensus        80 A~~~~~~al~~~p~~~~   96 (117)
T 3k9i_A           80 GVELLLKIIAETSDDET   96 (117)
T ss_dssp             HHHHHHHHHHHHCCCHH
T ss_pred             HHHHHHHHHHhCCCcHH
Confidence            99999988888886654

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=92.55  E-value=5.6  Score=38.27  Aligned_cols=139  Identities=14%  Similarity=0.032  Sum_probs=73.9

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCe------EEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCC
Q 004468           62 GSLLISGSDDTHINVWSYSSRK------LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDN  135 (751)
Q Consensus        62 g~~LaSgs~Dg~I~IWd~~~~~------~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~  135 (751)
                      ..+|.....| +|+.=-+.++.      ...++-.+-=.++.+++|+|+  +.+.+.  .++.+.-.+..+...      
T Consensus         4 ~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~--G~LYaV--~~G~Ly~~~~~t~~~------   72 (236)
T 1tl2_A            4 ESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPG--GELYGV--LNDKIYKGTPPTHDN------   72 (236)
T ss_dssp             CCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTT--SCEEEE--ETTEEEEESCCCSTT------
T ss_pred             ceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCC--ccEEEE--eCCeEEEECCCCCCc------
Confidence            4567777777 66665554443      222331111357889999997  776666  667655544432111      


Q ss_pred             CCCCceeecccCCc--------eeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceec
Q 004468          136 AITPSALYQCHTRR--------VKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRS  207 (751)
Q Consensus       136 ~~~~~~~~~~h~~~--------V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  207 (751)
                           ..+.+-...        -..+.|.| ++.+.++  .||.|.-++--+...        .   ..+.+   +..  
T Consensus        73 -----~~W~~s~t~IG~~Gw~~F~a~~fD~-~G~LYav--~dG~iyr~~pP~~~~--------~---~Wl~~---a~~--  128 (236)
T 1tl2_A           73 -----DNWMGRAKKIGNGGWNQFQFLFFDP-NGYLYAV--SKDKLYKASPPQSDT--------D---NWIAR---ATE--  128 (236)
T ss_dssp             -----CCHHHHCEEEECSCGGGCSEEEECT-TSCEEEE--ETTEEEEESCCCSTT--------C---CHHHH---SEE--
T ss_pred             -----ccccccccEecccccccceEEEECC-CCCEEEe--CCCEEEEeCCCcCCC--------C---ceecc---ccE--
Confidence                 111111222        37888988 6677766  569887776322110        0   00000   000  


Q ss_pred             ccCCCCCccceEEEEEeCCCCcEEEEEeCCCeE
Q 004468          208 LADPPKQTLSLKSCDISSTRPHLLLVGGSDAFA  240 (751)
Q Consensus       208 ~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~I  240 (751)
                      +  ....-..+..|.|.|+ +.+.++.  |+.+
T Consensus       129 v--g~~gw~~~~~lff~p~-G~Lyav~--dg~l  156 (236)
T 1tl2_A          129 V--GSGGWSGFKFLFFHPN-GYLYAVH--GQQF  156 (236)
T ss_dssp             E--ECSSGGGEEEEEECTT-SCEEEEE--TTEE
T ss_pred             e--ccCCCCceEEEEECCC-ceEEEEe--CCcE
Confidence            0  0001246789999995 6777666  7764

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=92.31  E-value=0.71  Score=42.49  Aligned_cols=48  Identities=21%  Similarity=0.070  Sum_probs=26.6

Q ss_pred             hHHHhhHHHhcCCCCCcchHHHHHHHHHHhcchHHHHHHHHHhcccCC
Q 004468          425 MAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDP  472 (751)
Q Consensus       425 ~al~d~~~a~~~~~~~~~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p  472 (751)
                      .|+....+++.++|.+..+++.++.++..+|++.+|+.+.++.....|
T Consensus       125 ~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p  172 (184)
T 3vtx_A          125 KAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEE  172 (184)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTH
T ss_pred             hHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCc
Confidence            455555555555555555555555555555555555555554444433

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=92.28  E-value=9.5  Score=38.52  Aligned_cols=68  Identities=12%  Similarity=0.124  Sum_probs=36.2

Q ss_pred             EECCCCCEEEEEeC----C-------CcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECC--------C
Q 004468           57 SWNSKGSLLISGSD----D-------THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD--------A  117 (751)
Q Consensus        57 ~~s~dg~~LaSgs~----D-------g~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~D--------g  117 (751)
                      ....++.+++.|+.    +       ..+.+||+.+.+-...-.......-.++... +  +.+++.|+.+        .
T Consensus        41 ~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~--~~lyv~GG~~~~~~~~~~~  117 (315)
T 4asc_A           41 LVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGEA-L--NSIYVVGGREIKDGERCLD  117 (315)
T ss_dssp             EECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESCEEEEE-T--TEEEEECCEESSTTCCBCC
T ss_pred             EEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhceeEEEE-C--CEEEEEeCCcCCCCCcccc
Confidence            34457888888883    1       1277888887654221101111111122222 3  5677777642        4


Q ss_pred             cEEEEECCCC
Q 004468          118 EVRLFNLSRF  127 (751)
Q Consensus       118 ~V~vwd~~~~  127 (751)
                      .+.+||+.+.
T Consensus       118 ~~~~~d~~~~  127 (315)
T 4asc_A          118 SVMCYDRLSF  127 (315)
T ss_dssp             CEEEEETTTT
T ss_pred             eEEEECCCCC
Confidence            5888888764

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=92.27  E-value=1.3  Score=45.15  Aligned_cols=113  Identities=18%  Similarity=0.125  Sum_probs=85.4

Q ss_pred             HHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcchHHHHHH
Q 004468          370 ARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSE  449 (751)
Q Consensus       370 ~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~a~~~~~~  449 (751)
                      +......|. +..|+..+..++...+..  +......+...+..+...   |+.-.|+..+.+++.++|.++.+++.++.
T Consensus       241 a~~~~~~~~-~~~A~~~~~~~~~~~~~~--~~~~~~~~~~la~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~~~~  314 (359)
T 3ieg_A          241 AEELIRDGR-YTDATSKYESVMKTEPSV--AEYTVRSKERICHCFSKD---EKPVEAIRICSEVLQMEPDNVNALKDRAE  314 (359)
T ss_dssp             HHHHHHTTC-HHHHHHHHHHHHHHCCSS--HHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHcCC-HHHHHHHHHHHHhcCCCc--hHHHHHHHHHHHHHHHHc---cCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence            444555666 888999999999877553  222223445566666553   34667888899999999999999999999


Q ss_pred             HHHHhcchHHHHHHHHHhcccCCCChhhhHHHHHHHHHH
Q 004468          450 ALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHI  488 (751)
Q Consensus       450 ~l~~l~~~~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~  488 (751)
                      ++..+|++.+|..+++......|........+..+...+
T Consensus       315 ~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~  353 (359)
T 3ieg_A          315 AYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLL  353 (359)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence            999999999999999999999998776655555554444

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=92.24  E-value=1.2  Score=40.81  Aligned_cols=54  Identities=13%  Similarity=0.073  Sum_probs=44.2

Q ss_pred             hhhHHHhhHHHhcCCCCCcchHHHHHHHHHHhcchHHHHHHHHHhcccCCCChh
Q 004468          423 AQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSV  476 (751)
Q Consensus       423 ~y~al~d~~~a~~~~~~~~~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~~  476 (751)
                      ...|.....+++.++|.+..++..++.++..++++.+|+.++++.....|....
T Consensus        89 ~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~  142 (184)
T 3vtx_A           89 KQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIR  142 (184)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhh
Confidence            345566677778889999999999999999999999999988888888887653

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=91.76  E-value=0.77  Score=49.14  Aligned_cols=110  Identities=16%  Similarity=0.149  Sum_probs=89.1

Q ss_pred             cccCcchhHHHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhc
Q 004468          356 VATGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARR  435 (751)
Q Consensus       356 ~~~~~~~~~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~  435 (751)
                      +...+.....+...+...+..|. +..|+..|..++...+..      ...+..++..+...+   +.-.|+....+++.
T Consensus        19 ~~~~p~~~~~~~~~~~~~~~~g~-~~~A~~~~~~~l~~~p~~------~~~~~~l~~~~~~~g---~~~~A~~~~~~al~   88 (450)
T 2y4t_A           19 YFQSMADVEKHLELGKKLLAAGQ-LADALSQFHAAVDGDPDN------YIAYYRRATVFLAMG---KSKAALPDLTKVIQ   88 (450)
T ss_dssp             ----CHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTT---CHHHHHHHHHHHHH
T ss_pred             ccccHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCcc------HHHHHHHHHHHHHCC---CHHHHHHHHHHHHh
Confidence            34566777777888888888888 999999999999876543      346677777777654   46678899999999


Q ss_pred             CCCCCcchHHHHHHHHHHhcchHHHHHHHHHhcccCCCCh
Q 004468          436 IDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNS  475 (751)
Q Consensus       436 ~~~~~~~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~  475 (751)
                      ++|....+++.++.++..+|++.+|..++.......|...
T Consensus        89 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  128 (450)
T 2y4t_A           89 LKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEN  128 (450)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHH
T ss_pred             cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Confidence            9999999999999999999999999999999988888654

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=91.46  E-value=1.2  Score=48.36  Aligned_cols=103  Identities=16%  Similarity=0.000  Sum_probs=86.5

Q ss_pred             hhHHHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCc
Q 004468          362 KCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSF  441 (751)
Q Consensus       362 ~~~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~  441 (751)
                      ....+...+...+..|. |..|+..|.+++...++       ...+.+++.+++..+   +.-.|+..+.+++.++|.+.
T Consensus         5 ~a~~~~~~g~~~~~~g~-~~~A~~~~~~al~~~p~-------~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~   73 (514)
T 2gw1_A            5 YALALKDKGNQFFRNKK-YDDAIKYYNWALELKED-------PVFYSNLSACYVSVG---DLKKVVEMSTKALELKPDYS   73 (514)
T ss_dssp             HHHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHCSCCH
T ss_pred             hHHHHHHHHHHHHHhcc-HHHHHHHHHHHHhcCcc-------HHHHHhHHHHHHHHh---hHHHHHHHHHHHhccChHHH
Confidence            45567778888888888 99999999999987642       356778888887654   46678999999999999999


Q ss_pred             chHHHHHHHHHHhcchHHHHHHHHHhcccCCCCh
Q 004468          442 RAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNS  475 (751)
Q Consensus       442 ~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~  475 (751)
                      .+++.++.++..+|++.+|..++..+....|...
T Consensus        74 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  107 (514)
T 2gw1_A           74 KVLLRRASANEGLGKFADAMFDLSVLSLNGDFND  107 (514)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCG
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCcc
Confidence            9999999999999999999999998888777544

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=91.23  E-value=1.7  Score=41.56  Aligned_cols=106  Identities=15%  Similarity=0.035  Sum_probs=80.9

Q ss_pred             CcchhHHHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccc--------cchhhhHHHhh
Q 004468          359 GLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKW--------KNDAQMAIRDC  430 (751)
Q Consensus       359 ~~~~~~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w--------~~d~y~al~d~  430 (751)
                      .|+....+...+......|. +..|+..+..++...+..      ...+.+.+.++....-        .|+.-.|+...
T Consensus        35 ~p~~~~a~~~lg~~~~~~g~-~~~A~~~~~~al~~~P~~------~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~  107 (217)
T 2pl2_A           35 NPQDPEALYWLARTQLKLGL-VNPALENGKTLVARTPRY------LGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVL  107 (217)
T ss_dssp             SSSCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHH
Confidence            44445555566666667777 889999999999877654      3455666666665410        15566788889


Q ss_pred             HHHhcCCCCCcchHHHHHHHHHHhcchHHHHHHHHHhcccC
Q 004468          431 YNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLD  471 (751)
Q Consensus       431 ~~a~~~~~~~~~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~  471 (751)
                      .+++.++|.+..+++.++.++..+|++.+|+.++++.....
T Consensus       108 ~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  148 (217)
T 2pl2_A          108 KDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE  148 (217)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc
Confidence            99999999999999999999999999999999988876655

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=91.07  E-value=0.42  Score=40.32  Aligned_cols=82  Identities=11%  Similarity=-0.035  Sum_probs=64.0

Q ss_pred             HHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcchHHHHHHHHHHhcchHHHHH
Q 004468          383 GIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALD  462 (751)
Q Consensus       383 ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~a~~~~~~~l~~l~~~~~a~~  462 (751)
                      ++..|..++...+..      ...+.+.+..++..+   +.-.|+..+.+++.++|.+..+++.++.++..+|++.+|..
T Consensus         4 a~~~~~~al~~~p~~------~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~   74 (115)
T 2kat_A            4 ITERLEAMLAQGTDN------MLLRFTLGKTYAEHE---QFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQ   74 (115)
T ss_dssp             HHHHHHHHHTTTCCC------HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHhCCCc------HHHHHHHHHHHHHcc---CHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHH
Confidence            566677777655443      235566666666543   45568888999999999999999999999999999999999


Q ss_pred             HHHHhcccCCC
Q 004468          463 FAIAAQCLDPS  473 (751)
Q Consensus       463 ~~~~~~~~~p~  473 (751)
                      +++......|.
T Consensus        75 ~~~~al~~~~~   85 (115)
T 2kat_A           75 AWESGLAAAQS   85 (115)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHhccc
Confidence            99888776664

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=90.86  E-value=6.6  Score=39.64  Aligned_cols=147  Identities=14%  Similarity=0.135  Sum_probs=73.1

Q ss_pred             CCCEEEEEeC----C-----CcEEEEeCCCCeEEE--EecccCCcceEEEEEecCCCCcEEEEEECC-----CcEEEEEC
Q 004468           61 KGSLLISGSD----D-----THINVWSYSSRKLLH--SIETGHSANVFCTKFVPETSDELVVSGAGD-----AEVRLFNL  124 (751)
Q Consensus        61 dg~~LaSgs~----D-----g~I~IWd~~~~~~~~--~l~~~h~~~V~~v~fsp~s~~~~l~sgs~D-----g~V~vwd~  124 (751)
                      ++.+++.|+.    +     ..+.+||+.+.+...  .+.. ....- ++... +  +.+++.|+.+     ..+.+||+
T Consensus        70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~-~r~~~-~~~~~-~--~~iyv~GG~~~~~~~~~~~~yd~  144 (308)
T 1zgk_A           70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSV-PRNRI-GVGVI-D--GHIYAVGGSHGCIHHNSVERYEP  144 (308)
T ss_dssp             TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSS-CCBTC-EEEEE-T--TEEEEECCEETTEECCCEEEEET
T ss_pred             CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCc-Ccccc-EEEEE-C--CEEEEEcCCCCCcccccEEEECC
Confidence            5677777765    2     458889987765332  2211 11111 22222 3  5777777643     45788888


Q ss_pred             CCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCC-----cEEEEecCCCCCCCCCCCCCCccceEEEe
Q 004468          125 SRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG-----TLRQHDFRQGSSCPPAGSSHQECRNILLD  199 (751)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg-----~I~iwDlr~~~~~~~~~~~~~~~~~~l~~  199 (751)
                      .+..-..        +..+......- +++..  ++.+++.|+.++     .+.+||+.+.+                  
T Consensus       145 ~~~~W~~--------~~~~p~~r~~~-~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~------------------  195 (308)
T 1zgk_A          145 ERDEWHL--------VAPMLTRRIGV-GVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNE------------------  195 (308)
T ss_dssp             TTTEEEE--------CCCCSSCCBSC-EEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTE------------------
T ss_pred             CCCeEeE--------CCCCCccccce-EEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCe------------------
Confidence            7542211        11111111111 12222  457777887653     46677766542                  


Q ss_pred             cccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCC-----CeEEEEeCCCCC
Q 004468          200 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD-----AFARLYDRRMLP  249 (751)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D-----~~IriwD~~~~~  249 (751)
                           ...+...+........+.+   ++.+++.|+.+     ..+.+||+.+.+
T Consensus       196 -----W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~v~~yd~~~~~  242 (308)
T 1zgk_A          196 -----WRMITAMNTIRSGAGVCVL---HNCIYAAGGYDGQDQLNSVERYDVETET  242 (308)
T ss_dssp             -----EEECCCCSSCCBSCEEEEE---TTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred             -----EeeCCCCCCccccceEEEE---CCEEEEEeCCCCCCccceEEEEeCCCCc
Confidence                 1111111111122222333   35777888765     568899987643

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=90.85  E-value=1.1  Score=43.17  Aligned_cols=100  Identities=23%  Similarity=0.165  Sum_probs=78.1

Q ss_pred             hhHHHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCc
Q 004468          362 KCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSF  441 (751)
Q Consensus       362 ~~~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~  441 (751)
                      ....+...+......|. +..|+..+..++...+..      ...+.+.+..+...+   +.-.|+..+..++.++|.+.
T Consensus       138 ~~~~~~~~~~~~~~~~~-~~~A~~~~~~a~~~~~~~------~~~~~~l~~~~~~~~---~~~~A~~~~~~al~~~~~~~  207 (258)
T 3uq3_A          138 KAEEARLEGKEYFTKSD-WPNAVKAYTEMIKRAPED------ARGYSNRAAALAKLM---SFPEAIADCNKAIEKDPNFV  207 (258)
T ss_dssp             HHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCH
T ss_pred             hHHHHHHHHHHHHHhcC-HHHHHHHHHHHHhcCccc------HHHHHHHHHHHHHhC---CHHHHHHHHHHHHHhCHHHH
Confidence            33444455555666666 889999999999876553      346677777776544   45578888999999999999


Q ss_pred             chHHHHHHHHHHhcchHHHHHHHHHhcccC
Q 004468          442 RAHLYMSEALEQLCKYKEALDFAIAAQCLD  471 (751)
Q Consensus       442 ~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~  471 (751)
                      .+++.++.++..+|++.+|..++.......
T Consensus       208 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~  237 (258)
T 3uq3_A          208 RAYIRKATAQIAVKEYASALETLDAARTKD  237 (258)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence            999999999999999999999988877776

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=90.80  E-value=0.56  Score=42.10  Aligned_cols=89  Identities=12%  Similarity=0.026  Sum_probs=66.5

Q ss_pred             hhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcchHHHHHHHHHHhcchHH
Q 004468          380 PYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKE  459 (751)
Q Consensus       380 ~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~a~~~~~~~l~~l~~~~~  459 (751)
                      +..+|..+..++...+..      ...+.+.|..++..+   +.-.|+....+++.++|.++.+|+.++.++..++++.+
T Consensus        13 ~e~ai~~~~~a~~~~p~~------~~~~~~la~~y~~~~---~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~   83 (150)
T 4ga2_A           13 VERYIASVQGSTPSPRQK------SIKGFYFAKLYYEAK---EYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDK   83 (150)
T ss_dssp             HHHHHHHHHHHSCSHHHH------HTTHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHhcccCccc------HHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHH
Confidence            334566666555432211      223445566666543   35578888999999999999999999999999999999


Q ss_pred             HHHHHHHhcccCCCChhh
Q 004468          460 ALDFAIAAQCLDPSNSVM  477 (751)
Q Consensus       460 a~~~~~~~~~~~p~~~~~  477 (751)
                      |..++.......|.....
T Consensus        84 A~~~~~~al~~~p~~~~~  101 (150)
T 4ga2_A           84 AVECYRRSVELNPTQKDL  101 (150)
T ss_dssp             HHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHHhCCCCHHH
Confidence            999999999999976543

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=90.45  E-value=1.8  Score=40.61  Aligned_cols=96  Identities=11%  Similarity=-0.015  Sum_probs=52.5

Q ss_pred             HHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCc-------
Q 004468          369 IARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSF-------  441 (751)
Q Consensus       369 ~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~-------  441 (751)
                      .+......|. +..|+..|..++...+..      ...+.+++.++...+   +.-.|+....+++.+.|.+.       
T Consensus        43 lg~~~~~~g~-~~~A~~~~~~al~~~~~~------~~~~~~lg~~~~~~~---~~~~A~~~~~~al~~~~~~~~~~~~~~  112 (213)
T 1hh8_A           43 IGCMYTILKN-MTEAEKAFTRSINRDKHL------AVAYFQRGMLYYQTE---KYDLAIKDLKEALIQLRGNQLIDYKIL  112 (213)
T ss_dssp             HHHHHHHTTC-HHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTTTTCSEEECGGG
T ss_pred             HHHHHHHcCC-HHHHHHHHHHHHHhCccc------hHHHHHHHHHHHHcc---cHHHHHHHHHHHHHhCCCccHHHHHHh
Confidence            3344444444 556666666666544332      234445555554432   33445555666666555554       


Q ss_pred             ---------chHHHHHHHHHHhcchHHHHHHHHHhcccCCCC
Q 004468          442 ---------RAHLYMSEALEQLCKYKEALDFAIAAQCLDPSN  474 (751)
Q Consensus       442 ---------~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~  474 (751)
                               .+++.++.++..+|++.+|..++.......|..
T Consensus       113 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~  154 (213)
T 1hh8_A          113 GLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP  154 (213)
T ss_dssp             TBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred             ccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence                     566666666666666666666666666665543

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=90.44  E-value=9.3  Score=46.89  Aligned_cols=232  Identities=10%  Similarity=0.138  Sum_probs=122.6

Q ss_pred             ECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCC
Q 004468           58 WNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAI  137 (751)
Q Consensus        58 ~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~  137 (751)
                      .+|..+.||-=. ..++.|+|+.+...+..+ . ....|.-=+|...   +.|+-.. +..|..|++...         .
T Consensus        73 MnP~~~iiALra-g~~lQiFnl~~k~klks~-~-~~e~VvfWkWis~---~~l~lVT-~~aVyHW~~~~~---------s  136 (1630)
T 1xi4_A           73 MNPASKVIALKA-GKTLQIFNIEMKSKMKAH-T-MTDDVTFWKWISL---NTVALVT-DNAVYHWSMEGE---------S  136 (1630)
T ss_pred             cCCCcceEEEec-CCeEEEeehHHhhhhccc-c-cCCCceEEEecCC---CeeEEEc-CCeEEEeccCCC---------C
Confidence            456667777654 578999999887777665 2 2456777788765   3444332 578999999642         1


Q ss_pred             CCceeeccc----CCceeEEEEecCCCCEEEEEe------CCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceec
Q 004468          138 TPSALYQCH----TRRVKKLAVEVGNPHVVWSAS------EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRS  207 (751)
Q Consensus       138 ~~~~~~~~h----~~~V~~l~~sp~~~~~l~s~s------~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  207 (751)
                      .|.+.+..|    ...|..-..+++...++++|-      -.|.+.+|........  ...++..+.   ....      
T Consensus       137 ~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ--~iegha~~F---~~~~------  205 (1630)
T 1xi4_A          137 QPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQ--PIEGHAASF---AQFK------  205 (1630)
T ss_pred             ccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccch--hhhHhHhhh---heec------
Confidence            566666666    344555666674444444443      3467777776654321  111111110   0000      


Q ss_pred             ccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCC-CCccccCCCCCCCCccccccccccccCCccccceEEEE
Q 004468          208 LADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRML-PPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVT  286 (751)
Q Consensus       208 ~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~  286 (751)
                      + ........+.|.+...  .       ..+.++|-++... .....++     .+.+..+.|..    ..... .-++.
T Consensus       206 ~-~~~~~~~~l~~f~~~~--~-------~g~kLhi~Ei~~~~~~~~~f~-----kk~~~~~~~~~----~~~Df-pv~~~  265 (1630)
T 1xi4_A          206 M-EGNAEESTLFCFAVRG--Q-------AGGKLHIIEVGTPPTGNQPFP-----KKAVDVFFPPE----AQNDF-PVAMQ  265 (1630)
T ss_pred             c-CCCCCCceEEEEEEec--C-------CCceEEEEecCCCccCCCCCc-----cccccccCCcc----cccCc-ceEEE
Confidence            0 0001112233333321  1       1268888888543 1111111     11122222221    11222 34688


Q ss_pred             EcCCCCEEEEEeCCCcEEEEECCCCCcceeeeecCCCceeEEeCCCCCCc
Q 004468          287 FSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGL  336 (751)
Q Consensus       287 fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp~~~~~  336 (751)
                      .|+.-..+..-+.-|.|++||+.++...-...-..+.+-..+......|+
T Consensus       266 vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ris~~~iF~~~~~~~~~g~  315 (1630)
T 1xi4_A          266 ISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGI  315 (1630)
T ss_pred             eccccCEEEEEecCceEEEEecccchhhhhccccCCceEEeccCCCCCce
Confidence            88888888999999999999999976443333333333333443333343

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=89.77  E-value=1.7  Score=48.51  Aligned_cols=104  Identities=17%  Similarity=0.066  Sum_probs=81.0

Q ss_pred             hHHHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcc
Q 004468          363 CRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFR  442 (751)
Q Consensus       363 ~~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~  442 (751)
                      ...+...+......|+ +..|+..|.+++...+..      ...+.+.+.++...   |+.-.|+....+++.++|.+..
T Consensus        23 ~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~---g~~~~A~~~~~~al~~~p~~~~   92 (568)
T 2vsy_A           23 FVAWLMLADAELGMGD-TTAGEMAVQRGLALHPGH------PEAVARLGRVRWTQ---QRHAEAAVLLQQASDAAPEHPG   92 (568)
T ss_dssp             HHHHHHHHHHHHHHTC-HHHHHHHHHHHHTTSTTC------HHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHC---CCHHHHHHHHHHHHhcCCCCHH
Confidence            3444555666666677 889999999999866543      34566777776654   3456688888899999999999


Q ss_pred             hHHHHHHHHHHhcchHHHHHHHHHhcccCCCChh
Q 004468          443 AHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSV  476 (751)
Q Consensus       443 a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~~  476 (751)
                      +++.++.++..++++.+|..++++.....|....
T Consensus        93 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  126 (568)
T 2vsy_A           93 IALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPY  126 (568)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence            9999999999999999999999998888887653

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=89.73  E-value=2.6  Score=44.85  Aligned_cols=111  Identities=17%  Similarity=0.119  Sum_probs=84.4

Q ss_pred             HHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcchHHHHHH
Q 004468          370 ARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSE  449 (751)
Q Consensus       370 ~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~a~~~~~~  449 (751)
                      +......|. +..|+..+..++...+..  +......+.+.+.++...   |+.-.|+..+.+++.++|....+++.++.
T Consensus       264 ~~~~~~~g~-~~~A~~~~~~~l~~~p~~--~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~a~~~~p~~~~~~~~l~~  337 (450)
T 2y4t_A          264 AEELIRDGR-YTDATSKYESVMKTEPSI--AEYTVRSKERICHCFSKD---EKPVEAIRVCSEVLQMEPDNVNALKDRAE  337 (450)
T ss_dssp             HHHHHHHTC-HHHHHHHHHHHHHHCCSS--HHHHHHHHHHHHHHHHTT---TCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHcCC-HHHHHHHHHHHHhcCCcc--hHHHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence            455555666 888899999998866542  222234566777777664   34667889999999999999999999999


Q ss_pred             HHHHhcchHHHHHHHHHhcccCCCChhhhHHHHHHHH
Q 004468          450 ALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKK  486 (751)
Q Consensus       450 ~l~~l~~~~~a~~~~~~~~~~~p~~~~~~~~~~~~~~  486 (751)
                      ++..++++.+|..+++......|........+..+..
T Consensus       338 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  374 (450)
T 2y4t_A          338 AYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQR  374 (450)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred             HHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHH
Confidence            9999999999999999999999987665444444333

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=89.71  E-value=0.97  Score=42.60  Aligned_cols=99  Identities=14%  Similarity=-0.039  Sum_probs=77.6

Q ss_pred             HHHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcch
Q 004468          364 RMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRA  443 (751)
Q Consensus       364 ~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~a  443 (751)
                      ..+...+......|. |..|+..|.+++.       +  ....+.+++..+...+   +.-.|+....+++.++|....+
T Consensus         7 ~~~~~~g~~~~~~~~-~~~A~~~~~~a~~-------~--~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~~~~~~~   73 (213)
T 1hh8_A            7 ISLWNEGVLAADKKD-WKGALDAFSAVQD-------P--HSRICFNIGCMYTILK---NMTEAEKAFTRSINRDKHLAVA   73 (213)
T ss_dssp             HHHHHHHHHHHHTTC-HHHHHHHHHTSSS-------C--CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHHHHhCC-HHHHHHHHHHHcC-------C--ChHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCccchHH
Confidence            344555666666777 8788888887752       1  1346777787777644   4567888899999999999999


Q ss_pred             HHHHHHHHHHhcchHHHHHHHHHhcccCCCCh
Q 004468          444 HLYMSEALEQLCKYKEALDFAIAAQCLDPSNS  475 (751)
Q Consensus       444 ~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~  475 (751)
                      ++.++.++..++++.+|+.++.......|...
T Consensus        74 ~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~  105 (213)
T 1hh8_A           74 YFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQ  105 (213)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCS
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHHhCCCcc
Confidence            99999999999999999999999888888644

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=89.47  E-value=19  Score=36.25  Aligned_cols=67  Identities=12%  Similarity=0.087  Sum_probs=35.6

Q ss_pred             ECCCCCEEEEEeC----CC-------cEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECC-------CcE
Q 004468           58 WNSKGSLLISGSD----DT-------HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD-------AEV  119 (751)
Q Consensus        58 ~s~dg~~LaSgs~----Dg-------~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~D-------g~V  119 (751)
                      ...++.+++.|+.    ++       .+.+||+.+.+....-.......-.++... +  +.+++.|+.+       ..+
T Consensus        53 ~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~--~~iyv~GG~~~~~~~~~~~~  129 (318)
T 2woz_A           53 VTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEV-D--DKIYVVAGKDLQTEASLDSV  129 (318)
T ss_dssp             ECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCEEEEE-T--TEEEEEEEEBTTTCCEEEEE
T ss_pred             EEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccceEEE-C--CEEEEEcCccCCCCcccceE
Confidence            3457888888883    12       177788877654321101111111222222 3  5777777764       347


Q ss_pred             EEEECCCC
Q 004468          120 RLFNLSRF  127 (751)
Q Consensus       120 ~vwd~~~~  127 (751)
                      .+||+.+.
T Consensus       130 ~~yd~~~~  137 (318)
T 2woz_A          130 LCYDPVAA  137 (318)
T ss_dssp             EEEETTTT
T ss_pred             EEEeCCCC
Confidence            78888753

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=89.46  E-value=0.78  Score=52.86  Aligned_cols=46  Identities=7%  Similarity=-0.153  Sum_probs=27.8

Q ss_pred             hhHHHhcCCCCCcchHHHHHHHHHHhcchHHHHHHHHHhcccCCCC
Q 004468          429 DCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSN  474 (751)
Q Consensus       429 d~~~a~~~~~~~~~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~  474 (751)
                      ...+|+.++|.+..+++.++.++..+|++.+|+.++++.....|.+
T Consensus       522 ~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~  567 (681)
T 2pzi_A          522 FYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHF  567 (681)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTH
T ss_pred             HHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCccc
Confidence            3445556666666666666666666666666666666665555543

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=89.22  E-value=2.7  Score=42.25  Aligned_cols=108  Identities=11%  Similarity=0.033  Sum_probs=76.2

Q ss_pred             cchhHHHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhccccc-------------------
Q 004468          360 LGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWK-------------------  420 (751)
Q Consensus       360 ~~~~~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~-------------------  420 (751)
                      ++....+...+...+..|. +..|+..|..++...+..      ...+.+.+.+++..+-.                   
T Consensus       114 p~~~~~~~~~a~~~~~~g~-~~~A~~~~~~al~~~P~~------~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~  186 (287)
T 3qou_A          114 PREEELXAQQAMQLMQESN-YTDALPLLXDAWQLSNQN------GEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRY  186 (287)
T ss_dssp             CCHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHTTSC------HHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHH
T ss_pred             CCchhhHHHHHHHHHhCCC-HHHHHHHHHHHHHhCCcc------hhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHH
Confidence            3444556667777777777 888888898888877665      12233333333322210                   


Q ss_pred             ------------chhhhHHHhhHHHhcCCCCCcchHHHHHHHHHHhcchHHHHHHHHHhcccCCCC
Q 004468          421 ------------NDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSN  474 (751)
Q Consensus       421 ------------~d~y~al~d~~~a~~~~~~~~~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~  474 (751)
                                  ++.-.|+....+++.++|.+..+++.++.++...|++.+|...+..+....|.+
T Consensus       187 ~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~  252 (287)
T 3qou_A          187 QGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTA  252 (287)
T ss_dssp             HHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTG
T ss_pred             HHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccc
Confidence                        001114455667788999999999999999999999999999999999998976

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=89.21  E-value=17  Score=39.10  Aligned_cols=115  Identities=9%  Similarity=0.163  Sum_probs=64.4

Q ss_pred             CCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeE--EEEecc-----cCCcceEEEEEecC---CCCcEEEEEEC----
Q 004468           50 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKL--LHSIET-----GHSANVFCTKFVPE---TSDELVVSGAG----  115 (751)
Q Consensus        50 ~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~--~~~l~~-----~h~~~V~~v~fsp~---s~~~~l~sgs~----  115 (751)
                      -...+.|+|.|+|+++++-...+.|++++..+++.  +..+..     ...+.+..|+|+|+   . +.+.++-+.    
T Consensus        26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~-g~lYv~~s~~~~~  104 (454)
T 1cru_A           26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNN-PYIYISGTFKNPK  104 (454)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTS-CEEEEEEEEECTT
T ss_pred             CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcC-CEEEEEEeccccC
Confidence            34678999999999887765445788888655543  222311     12467889999995   2 555555442    


Q ss_pred             --------CCcEEEEECCCCCCCCCCCCCCCCce-eec-ccCCceeEEEEecCCCCEEEEEeCC
Q 004468          116 --------DAEVRLFNLSRFSGRGLDDNAITPSA-LYQ-CHTRRVKKLAVEVGNPHVVWSASED  169 (751)
Q Consensus       116 --------Dg~V~vwd~~~~~~~~~~~~~~~~~~-~~~-~h~~~V~~l~~sp~~~~~l~s~s~D  169 (751)
                              ...|.-++.........   ..+.+. .+. ........|+|.| ++.++++.+..
T Consensus       105 ~~~~~~~~~~~v~r~~~~~~~~~~~---~~~~i~~~~p~~~~H~~~~l~f~p-DG~Lyv~~Gd~  164 (454)
T 1cru_A          105 STDKELPNQTIIRRYTYNKSTDTLE---KPVDLLAGLPSSKDHQSGRLVIGP-DQKIYYTIGDQ  164 (454)
T ss_dssp             C--CCSCEEEEEEEEEEETTTTEEE---EEEEEEEEECCCSSCCEEEEEECT-TSCEEEEECCT
T ss_pred             CCccccccccEEEEEEECCCCCCcC---CcEEEEEcCCCCCCCCCCeEeECC-CCeEEEEECCC
Confidence                    12454455432111000   001111 111 1123468999999 56787776653

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=89.16  E-value=2.4  Score=40.35  Aligned_cols=115  Identities=11%  Similarity=0.018  Sum_probs=82.1

Q ss_pred             cchhHHHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCc-hhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCC
Q 004468          360 LGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPM-LRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDS  438 (751)
Q Consensus       360 ~~~~~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~-~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~  438 (751)
                      +.....+...+.-....|. +..|+..+..++...+....-. .....|.+.+..+...   |+.-.|+....+++.++|
T Consensus        73 p~~~~~~~~l~~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~---~~~~~A~~~~~~al~~~p  148 (228)
T 4i17_A           73 YNLANAYIGKSAAYRDMKN-NQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQA---GNIEKAEENYKHATDVTS  148 (228)
T ss_dssp             CSHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHTTSSC
T ss_pred             cchHHHHHHHHHHHHHccc-HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHh---ccHHHHHHHHHHHHhcCC
Confidence            3344445555666666666 8889999999998776541100 0002355555555543   446678999999999999


Q ss_pred             C--CcchHHHHHHHHHHhcch---------------------------HHHHHHHHHhcccCCCChhhh
Q 004468          439 S--SFRAHLYMSEALEQLCKY---------------------------KEALDFAIAAQCLDPSNSVMA  478 (751)
Q Consensus       439 ~--~~~a~~~~~~~l~~l~~~---------------------------~~a~~~~~~~~~~~p~~~~~~  478 (751)
                      .  ...+++.++.++...+..                           ++|+.+++......|......
T Consensus       149 ~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~  217 (228)
T 4i17_A          149 KKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNRTEIK  217 (228)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHH
Confidence            9  999999999999999888                           888888888888888765543

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=89.05  E-value=2  Score=41.91  Aligned_cols=104  Identities=18%  Similarity=0.042  Sum_probs=82.6

Q ss_pred             hhHHHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCc
Q 004468          362 KCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSF  441 (751)
Q Consensus       362 ~~~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~  441 (751)
                      ....+...+......|. +..|+..+..++...+..      ...+.+.+..+...   |+.-.|+....+++.++|...
T Consensus        42 ~~~~~~~l~~~~~~~~~-~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~---~~~~~A~~~~~~al~~~~~~~  111 (275)
T 1xnf_A           42 RAQLLYERGVLYDSLGL-RALARNDFSQALAIRPDM------PEVFNYLGIYLTQA---GNFDAAYEAFDSVLELDPTYN  111 (275)
T ss_dssp             HHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTTCT
T ss_pred             hHHHHHHHHHHHHHccc-HHHHHHHHHHHHHcCCCc------HHHHHHHHHHHHHc---cCHHHHHHHHHHHHhcCcccc
Confidence            34445556666667777 889999999999876543      34556666666654   345678888999999999999


Q ss_pred             chHHHHHHHHHHhcchHHHHHHHHHhcccCCCCh
Q 004468          442 RAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNS  475 (751)
Q Consensus       442 ~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~  475 (751)
                      .+++.++.++..+|++.+|..++.......|...
T Consensus       112 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~  145 (275)
T 1xnf_A          112 YAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDP  145 (275)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCh
Confidence            9999999999999999999999999988888765

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=88.98  E-value=2.6  Score=45.66  Aligned_cols=111  Identities=14%  Similarity=-0.009  Sum_probs=86.2

Q ss_pred             HHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcchHHH
Q 004468          367 VEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLY  446 (751)
Q Consensus       367 ~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~a~~~  446 (751)
                      ...+......|. +..|+..+..++...+...........+.+.+..+....|.|+.-.|+....+++.++|.+..++..
T Consensus       376 ~~la~~~~~~~~-~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~  454 (514)
T 2gw1_A          376 NFFAEILTDKND-FDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIG  454 (514)
T ss_dssp             HHHHHHHHHTTC-HHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHCCC-HHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHH
Confidence            334444555565 7788888888887665543222112366788888887666788888999999999999999999999


Q ss_pred             HHHHHHHhcchHHHHHHHHHhcccCCCChhhh
Q 004468          447 MSEALEQLCKYKEALDFAIAAQCLDPSNSVMA  478 (751)
Q Consensus       447 ~~~~l~~l~~~~~a~~~~~~~~~~~p~~~~~~  478 (751)
                      ++.++..+|++.+|..++.......|......
T Consensus       455 la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~  486 (514)
T 2gw1_A          455 LAQMKLQQEDIDEAITLFEESADLARTMEEKL  486 (514)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHhccccHHHH
Confidence            99999999999999999999999999765543

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=88.73  E-value=7.9  Score=38.72  Aligned_cols=106  Identities=11%  Similarity=0.077  Sum_probs=54.2

Q ss_pred             CCCEEEEEeCC-----CcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECC-----CcEEEEECCCCCCC
Q 004468           61 KGSLLISGSDD-----THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD-----AEVRLFNLSRFSGR  130 (751)
Q Consensus        61 dg~~LaSgs~D-----g~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~D-----g~V~vwd~~~~~~~  130 (751)
                      ++++++.|+.+     ..+.+||+.+.+....-.......-.++... +  +.+++.|+.+     ..+.+||+.+..-.
T Consensus       112 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~--~~iyv~GG~~~~~~~~~~~~~d~~~~~W~  188 (301)
T 2vpj_A          112 GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA-S--GVIYCLGGYDGLNILNSVEKYDPHTGHWT  188 (301)
T ss_dssp             TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE-T--TEEEEECCBCSSCBCCCEEEEETTTTEEE
T ss_pred             CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE-C--CEEEEECCCCCCcccceEEEEeCCCCcEE
Confidence            57777777654     3588889877653322111111111122222 4  5777777765     45888888754211


Q ss_pred             CCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCC-----CcEEEEecCCC
Q 004468          131 GLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED-----GTLRQHDFRQG  180 (751)
Q Consensus       131 ~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~D-----g~I~iwDlr~~  180 (751)
                      .        +..+....... +++. . ++.+++.|+.+     ..+.+||+.+.
T Consensus       189 ~--------~~~~p~~r~~~-~~~~-~-~~~i~v~GG~~~~~~~~~v~~yd~~~~  232 (301)
T 2vpj_A          189 N--------VTPMATKRSGA-GVAL-L-NDHIYVVGGFDGTAHLSSVEAYNIRTD  232 (301)
T ss_dssp             E--------ECCCSSCCBSC-EEEE-E-TTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred             e--------CCCCCcccccc-eEEE-E-CCEEEEEeCCCCCcccceEEEEeCCCC
Confidence            1        11111111111 1222 2 55788888765     35777887664

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=88.57  E-value=1.1  Score=36.36  Aligned_cols=55  Identities=20%  Similarity=0.225  Sum_probs=49.6

Q ss_pred             hhhhHHHhhHHHhcCCCCCcc-hHHHHHHHHHHhcchHHHHHHHHHhcccCCCChh
Q 004468          422 DAQMAIRDCYNARRIDSSSFR-AHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSV  476 (751)
Q Consensus       422 d~y~al~d~~~a~~~~~~~~~-a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~~  476 (751)
                      +...|+..+.+++.++|.+.. +++.++.++..++++.+|..+++......|....
T Consensus        15 ~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~   70 (99)
T 2kc7_A           15 DIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPA   70 (99)
T ss_dssp             CHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTH
T ss_pred             CHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH
Confidence            355688889999999999999 9999999999999999999999999999997654

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=88.55  E-value=8.9  Score=38.41  Aligned_cols=106  Identities=17%  Similarity=0.148  Sum_probs=53.6

Q ss_pred             CCCEEEEEeCCC-----cEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECC-------CcEEEEECCCCC
Q 004468           61 KGSLLISGSDDT-----HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD-------AEVRLFNLSRFS  128 (751)
Q Consensus        61 dg~~LaSgs~Dg-----~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~D-------g~V~vwd~~~~~  128 (751)
                      ++++++.|+.++     .+.+||+.+.+....-.......-.++... +  +.+++.|+.+       ..+.+||+.+..
T Consensus       108 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~--~~iyv~GG~~~~~~~~~~~~~~yd~~~~~  184 (302)
T 2xn4_A          108 NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV-G--GLLYAVGGYDVASRQCLSTVECYNATTNE  184 (302)
T ss_dssp             TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE-T--TEEEEECCEETTTTEECCCEEEEETTTTE
T ss_pred             CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE-C--CEEEEEeCCCCCCCccccEEEEEeCCCCc
Confidence            577788887653     477888877654322111111111222222 3  5677776643       358889987542


Q ss_pred             CCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCC-----cEEEEecCCC
Q 004468          129 GRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG-----TLRQHDFRQG  180 (751)
Q Consensus       129 ~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg-----~I~iwDlr~~  180 (751)
                      -..        +..+....... +++..  ++.+++.|+.++     .+.+||+.+.
T Consensus       185 W~~--------~~~~p~~r~~~-~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~  230 (302)
T 2xn4_A          185 WTY--------IAEMSTRRSGA-GVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTN  230 (302)
T ss_dssp             EEE--------ECCCSSCCBSC-EEEEE--TTEEEEECCBSSSSBCCCEEEEETTTT
T ss_pred             EEE--------CCCCccccccc-cEEEE--CCEEEEECCCCCCcccceEEEEeCCCC
Confidence            111        11111111111 22222  557888887653     5777777654

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=88.47  E-value=30  Score=42.13  Aligned_cols=145  Identities=12%  Similarity=0.165  Sum_probs=84.8

Q ss_pred             CCEEEEEe----------CCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCC
Q 004468           62 GSLLISGS----------DDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRG  131 (751)
Q Consensus        62 g~~LaSgs----------~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~  131 (751)
                      ..+|+.|.          ..|.|.|+++..++.........+++|++++-..   | +|+.|- ..+|+||++...    
T Consensus       844 ~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~~---g-~Lla~i-g~~l~vy~l~~~----  914 (1158)
T 3ei3_A          844 NTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFN---G-KLLASI-NSTVRLYEWTTE----  914 (1158)
T ss_dssp             CCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSCEEEEEEET---T-EEEEEE-TTEEEEEEECTT----
T ss_pred             CEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCcCEEEeeeC---C-EEEEEc-CCEEEEEECCCC----
Confidence            46888886          3578999998755544333345678899887552   4 444443 479999999752    


Q ss_pred             CCCCCCCCceeecc-cCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccC
Q 004468          132 LDDNAITPSALYQC-HTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLAD  210 (751)
Q Consensus       132 ~~~~~~~~~~~~~~-h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  210 (751)
                            +.+. +.+ +-..|..+.... .+++++.|..-..|.++..+...             +.+..+.         
T Consensus       915 ------~~L~-~~~~~~~~i~~~~l~~-~~~~I~vgD~~~Sv~~~~y~~~~-------------~~L~~~a---------  964 (1158)
T 3ei3_A          915 ------KELR-TECNHYNNIMALYLKT-KGDFILVGDLMRSVLLLAYKPME-------------GNFEEIA---------  964 (1158)
T ss_dssp             ------SCEE-EEEEECCCSCEEEEEE-ETTEEEEEESSBCEEEEEEETTT-------------TEEEEEE---------
T ss_pred             ------ceEE-EEeeccccEEEEEEec-cCCEEEEEEhhheEEEEEEEcCC-------------CeEEEEE---------
Confidence                  1122 111 111132222222 24577777777777665544321             1111111         


Q ss_pred             CCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCC
Q 004468          211 PPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM  247 (751)
Q Consensus       211 ~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~  247 (751)
                      ..-...+++++.+--+  ..++.+..++.|.++....
T Consensus       965 ~D~~~~~vta~~~ld~--~t~l~aD~~gNl~vl~~~~  999 (1158)
T 3ei3_A          965 RDFNPNWMSAVEILDD--DNFLGAENAFNLFVCQKDS  999 (1158)
T ss_dssp             ECCSCBCEEEEEEEET--TEEEEEETTSEEEEEEECT
T ss_pred             eecccccEEEEEEEcc--CcEEEEcCCCcEEEEecCC
Confidence            1113567888888653  4788899999999987754

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=88.43  E-value=2.2  Score=43.45  Aligned_cols=99  Identities=17%  Similarity=0.147  Sum_probs=81.8

Q ss_pred             HHHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcch
Q 004468          364 RMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRA  443 (751)
Q Consensus       364 ~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~a  443 (751)
                      ..+...+...+..|+ |..|+..+..++...+..      ...+.+.+..+...   |+.-.|+....+++.++|.+..+
T Consensus         4 ~~~~~~~~~~~~~g~-~~~A~~~~~~~l~~~p~~------~~~~~~~a~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~   73 (359)
T 3ieg_A            4 EKHLELGKKLLAAGQ-LADALSQFHAAVDGDPDN------YIAYYRRATVFLAM---GKSKAALPDLTKVIALKMDFTAA   73 (359)
T ss_dssp             HHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHH---TCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCccc------HHHHHHHHHHHHHc---cCHHHHHHHHHHHHHhCCCcchH
Confidence            345566777777888 999999999999876554      34566677776654   34567888899999999999999


Q ss_pred             HHHHHHHHHHhcchHHHHHHHHHhcccCC
Q 004468          444 HLYMSEALEQLCKYKEALDFAIAAQCLDP  472 (751)
Q Consensus       444 ~~~~~~~l~~l~~~~~a~~~~~~~~~~~p  472 (751)
                      ++.++.++...+++.+|..++.......|
T Consensus        74 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~  102 (359)
T 3ieg_A           74 RLQRGHLLLKQGKLDEAEDDFKKVLKSNP  102 (359)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHTSCC
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHhcCC
Confidence            99999999999999999999999988888

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=88.38  E-value=1.1  Score=49.06  Aligned_cols=102  Identities=15%  Similarity=0.017  Sum_probs=79.7

Q ss_pred             hhHHHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCc
Q 004468          362 KCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSF  441 (751)
Q Consensus       362 ~~~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~  441 (751)
                      ....+...+...+..|+ |..|+..|..++...+..      ...+.+++..+...   |+.-.|+..+.+++.++|.+.
T Consensus        24 ~a~~~~~~g~~~~~~g~-~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~p~~~   93 (537)
T 3fp2_A           24 YAVQLKNRGNHFFTAKN-FNEAIKYYQYAIELDPNE------PVFYSNISACYIST---GDLEKVIEFTTKALEIKPDHS   93 (537)
T ss_dssp             HHHHHHHHHHHHHHTTC-CC-CHHHHHHHHHHCTTC------HHHHHHHHHHHHHH---TCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHHHhcc-HHHHHHHHHHHHhhCCCC------cHHHHHHHHHHHHc---CCHHHHHHHHHHHHhcCCchH
Confidence            34566777888888888 889999999999877654      45677888888764   346678999999999999999


Q ss_pred             chHHHHHHHHHHhcchHHHHHHHHHhcccCCCC
Q 004468          442 RAHLYMSEALEQLCKYKEALDFAIAAQCLDPSN  474 (751)
Q Consensus       442 ~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~  474 (751)
                      .+++.++.++..+|++.+|...+. .....|..
T Consensus        94 ~~~~~la~~~~~~g~~~~A~~~~~-~~~~~~~~  125 (537)
T 3fp2_A           94 KALLRRASANESLGNFTDAMFDLS-VLSLNGDF  125 (537)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHH-HHC-----
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHH-HHhcCCCC
Confidence            999999999999999999998886 44444543

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=88.34  E-value=0.99  Score=38.72  Aligned_cols=66  Identities=15%  Similarity=-0.006  Sum_probs=54.6

Q ss_pred             HHHHHhhcccccchhhhHHHhhHHHhcCCCCCcchHHHHHHHHHHhcchHHHHHHHHHhcccCCCChhh
Q 004468          409 IRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVM  477 (751)
Q Consensus       409 ~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~~~  477 (751)
                      ..+..++..   |+.-.|+....+++.++|.+..+++.++.++..+|++.+|+.+++......|.....
T Consensus        22 ~~g~~~~~~---g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~   87 (121)
T 1hxi_A           22 EEGLSMLKL---ANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAV   87 (121)
T ss_dssp             HHHHHHHHT---TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHc---CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence            344444443   345568888899999999999999999999999999999999999999999977543

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=88.32  E-value=1.2  Score=35.12  Aligned_cols=66  Identities=24%  Similarity=0.263  Sum_probs=53.2

Q ss_pred             hHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcchHHHHHHHHHHhcchHHHHHHHHHhcccCCCChh
Q 004468          408 CIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSV  476 (751)
Q Consensus       408 ~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~~  476 (751)
                      .+.+..+...   ++.-.|+....+++.++|....+++.++.++..++++.+|..++.......|....
T Consensus        13 ~~la~~~~~~---~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~   78 (91)
T 1na3_A           13 YNLGNAYYKQ---GDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAE   78 (91)
T ss_dssp             HHHHHHHHHT---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHHc---cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHH
Confidence            3444444432   34556888889999999999999999999999999999999999998888886543

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=88.24  E-value=2.9  Score=40.90  Aligned_cols=111  Identities=12%  Similarity=-0.014  Sum_probs=85.7

Q ss_pred             cchhHHHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCC
Q 004468          360 LGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSS  439 (751)
Q Consensus       360 ~~~~~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~  439 (751)
                      +.....+...+...+..|+ |..|+..+..++...+...   .....+...+.++...   |+.-.|+....+++.+.|.
T Consensus        12 ~~~~~~~~~~a~~~~~~g~-~~~A~~~~~~~l~~~p~~~---~~~~a~~~lg~~~~~~---~~~~~A~~~~~~~l~~~p~   84 (261)
T 3qky_A           12 HSSPQEAFERAMEFYNQGK-YDRAIEYFKAVFTYGRTHE---WAADAQFYLARAYYQN---KEYLLAASEYERFIQIYQI   84 (261)
T ss_dssp             CSSHHHHHHHHHHHHHTTC-HHHHHHHHHHHGGGCSCST---THHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTT
T ss_pred             CCCHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHhCCCCc---chHHHHHHHHHHHHHh---CcHHHHHHHHHHHHHHCCC
Confidence            3445667778888888888 9999999999999876542   1133455666666654   3455688888899999885


Q ss_pred             C---cchHHHHHHHHHH--------hcchHHHHHHHHHhcccCCCChhh
Q 004468          440 S---FRAHLYMSEALEQ--------LCKYKEALDFAIAAQCLDPSNSVM  477 (751)
Q Consensus       440 ~---~~a~~~~~~~l~~--------l~~~~~a~~~~~~~~~~~p~~~~~  477 (751)
                      +   ..+++.++.++..        ++++.+|+..+..+...+|.....
T Consensus        85 ~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~  133 (261)
T 3qky_A           85 DPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELV  133 (261)
T ss_dssp             CTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTH
T ss_pred             CchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhH
Confidence            5   5589999999999        999999999999999999976543

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=88.23  E-value=1.3  Score=36.42  Aligned_cols=64  Identities=13%  Similarity=0.032  Sum_probs=53.2

Q ss_pred             hHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcchHHHHHHHHHHhcchHHHHHHHHHhcccCCCC
Q 004468          408 CIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSN  474 (751)
Q Consensus       408 ~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~  474 (751)
                      .+.+..+...   |+.-.|+....+++.++|.+..+++.++.++..++++.+|+.++.......|..
T Consensus         8 ~~~g~~~~~~---~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~   71 (111)
T 2l6j_A            8 KEQGNSLFKQ---GLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTA   71 (111)
T ss_dssp             HHHHHHHHTT---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSST
T ss_pred             HHHHHHHHHc---CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence            3444444443   334568888899999999999999999999999999999999999999999976

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=88.14  E-value=23  Score=35.55  Aligned_cols=60  Identities=10%  Similarity=0.112  Sum_probs=32.1

Q ss_pred             EEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEEC----C-------CcEEEEECCCC
Q 004468           64 LLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG----D-------AEVRLFNLSRF  127 (751)
Q Consensus        64 ~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~----D-------g~V~vwd~~~~  127 (751)
                      +++.|+  ..+.+||+.+++-...-...............+  +.+++.|+.    +       ..+.+||+.+.
T Consensus         7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~--~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~   77 (315)
T 4asc_A            7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKE--NQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDS   77 (315)
T ss_dssp             EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTT--CCEEEEEEEEECSSCSSSCEEEEEEEEETTTT
T ss_pred             EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEEC--CEEEEEcCcccCCCCCccccccceEEecCCCC
Confidence            455565  479999998877543211111112222222334  678888773    1       12677888753

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=88.04  E-value=6.2  Score=38.42  Aligned_cols=110  Identities=12%  Similarity=-0.077  Sum_probs=83.4

Q ss_pred             hHHHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcc-----cccchhhhHHHhhHHHhcCC
Q 004468          363 CRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKR-----KWKNDAQMAIRDCYNARRID  437 (751)
Q Consensus       363 ~~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r-----~w~~d~y~al~d~~~a~~~~  437 (751)
                      ...+...+...+..|. |..|+..+..++...+....   ....+...+.++...     ...|+.-.|+....+++.+.
T Consensus        52 ~~a~~~lg~~~~~~~~-~~~A~~~~~~~l~~~p~~~~---~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~  127 (261)
T 3qky_A           52 ADAQFYLARAYYQNKE-YLLAASEYERFIQIYQIDPR---VPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY  127 (261)
T ss_dssp             HHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCTT---HHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHCCCCch---hHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC
Confidence            4445566666777777 99999999999998876522   123445556665541     01455667888889999999


Q ss_pred             CCCcchH-----------------HHHHHHHHHhcchHHHHHHHHHhcccCCCChh
Q 004468          438 SSSFRAH-----------------LYMSEALEQLCKYKEALDFAIAAQCLDPSNSV  476 (751)
Q Consensus       438 ~~~~~a~-----------------~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~~  476 (751)
                      |.+..+.                 +.++.++...|++.+|+..+..+...+|....
T Consensus       128 p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~  183 (261)
T 3qky_A          128 PNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPW  183 (261)
T ss_dssp             TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTT
T ss_pred             cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCch
Confidence            9998877                 88999999999999999999999999997543

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=87.97  E-value=11  Score=37.82  Aligned_cols=148  Identities=8%  Similarity=0.102  Sum_probs=74.4

Q ss_pred             CCCEEEEEeCC------CcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEEC---------CCcEEEEECC
Q 004468           61 KGSLLISGSDD------THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG---------DAEVRLFNLS  125 (751)
Q Consensus        61 dg~~LaSgs~D------g~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~---------Dg~V~vwd~~  125 (751)
                      ++++++.|+.+      ..+.+||+.+.+-...-.......-.++... +  +.+++.|+.         -..+.+||+.
T Consensus       101 ~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~--~~iyv~GG~~~~~~~~~~~~~~~~yd~~  177 (306)
T 3ii7_A          101 EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA-N--GLIYVCGGSLGNNVSGRVLNSCEVYDPA  177 (306)
T ss_dssp             TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-T--TEEEEECCEESCTTTCEECCCEEEEETT
T ss_pred             CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE-C--CEEEEECCCCCCCCcccccceEEEeCCC
Confidence            67788888765      4588999887654322111111111122222 3  567777654         3458889988


Q ss_pred             CCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCC-----cEEEEecCCCCCCCCCCCCCCccceEEEec
Q 004468          126 RFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG-----TLRQHDFRQGSSCPPAGSSHQECRNILLDL  200 (751)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg-----~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~  200 (751)
                      +..-..        +..+...... .+++..  ++.+++.|+.++     .+.+||+.+.+                   
T Consensus       178 ~~~W~~--------~~~~p~~r~~-~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~-------------------  227 (306)
T 3ii7_A          178 TETWTE--------LCPMIEARKN-HGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNE-------------------  227 (306)
T ss_dssp             TTEEEE--------ECCCSSCCBS-CEEEEE--TTEEEEECCEETTEEBCCEEEEETTTTE-------------------
T ss_pred             CCeEEE--------CCCccchhhc-ceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCc-------------------
Confidence            642111        1111111111 122222  457777777643     46777776543                   


Q ss_pred             ccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCC-----CeEEEEeCCCC
Q 004468          201 RCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD-----AFARLYDRRML  248 (751)
Q Consensus       201 ~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D-----~~IriwD~~~~  248 (751)
                          ...+...+.......++.+   ++.+++.|+.+     ..|.+||+.+.
T Consensus       228 ----W~~~~~~p~~r~~~~~~~~---~~~i~v~GG~~~~~~~~~~~~yd~~~~  273 (306)
T 3ii7_A          228 ----WKMVSPMPWKGVTVKCAAV---GSIVYVLAGFQGVGRLGHILEYNTETD  273 (306)
T ss_dssp             ----EEECCCCSCCBSCCEEEEE---TTEEEEEECBCSSSBCCEEEEEETTTT
T ss_pred             ----EEECCCCCCCccceeEEEE---CCEEEEEeCcCCCeeeeeEEEEcCCCC
Confidence                1111112222222233333   45788888754     56888888764

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=87.84  E-value=2.4  Score=40.18  Aligned_cols=76  Identities=13%  Similarity=0.142  Sum_probs=57.9

Q ss_pred             HHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcchHHHHH
Q 004468          369 IARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMS  448 (751)
Q Consensus       369 ~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~a~~~~~  448 (751)
                      .+......|. +..|+..|..++...+..      ...+.+++.++...+   +.-.|+....+++.++|.+..+++.++
T Consensus        60 lg~~~~~~g~-~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~P~~~~a~~~lg  129 (208)
T 3urz_A           60 LALAYKKNRN-YDKAYLFYKELLQKAPNN------VDCLEACAEMQVCRG---QEKDALRMYEKILQLEADNLAANIFLG  129 (208)
T ss_dssp             HHHHHHHTTC-HHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHCCC-HHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence            4555556666 889999999999987665      346677777776543   456788889999999999999988887


Q ss_pred             HHHHHh
Q 004468          449 EALEQL  454 (751)
Q Consensus       449 ~~l~~l  454 (751)
                      .++...
T Consensus       130 ~~~~~~  135 (208)
T 3urz_A          130 NYYYLT  135 (208)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            766544

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=87.59  E-value=4.9  Score=38.36  Aligned_cols=106  Identities=10%  Similarity=-0.055  Sum_probs=79.6

Q ss_pred             HHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcc--
Q 004468          365 MLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFR--  442 (751)
Q Consensus       365 ~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~--  442 (751)
                      .+...+...+..|+ |..|+..+..++...+....   ....+..++.++...+   +--.|+....+++.+.|.+..  
T Consensus         6 ~~~~~a~~~~~~g~-~~~A~~~~~~~~~~~p~~~~---~~~a~~~lg~~~~~~~---~~~~A~~~~~~~l~~~P~~~~~~   78 (225)
T 2yhc_A            6 EIYATAQQKLQDGN-WRQAITQLEALDNRYPFGPY---SQQVQLDLIYAYYKNA---DLPLAQAAIDRFIRLNPTHPNID   78 (225)
T ss_dssp             HHHHHHHHHHHHTC-HHHHHHHHHHHHHHCTTSTT---HHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCTTHH
T ss_pred             HHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCChH---HHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHCcCCCcHH
Confidence            34556667777787 99999999999987765421   1234455666665543   345678888889999999987  


Q ss_pred             -hHHHHHHHHHH------------------hcchHHHHHHHHHhcccCCCChhh
Q 004468          443 -AHLYMSEALEQ------------------LCKYKEALDFAIAAQCLDPSNSVM  477 (751)
Q Consensus       443 -a~~~~~~~l~~------------------l~~~~~a~~~~~~~~~~~p~~~~~  477 (751)
                       +++.++.++..                  .+++.+|+..+..+...+|.....
T Consensus        79 ~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a  132 (225)
T 2yhc_A           79 YVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYT  132 (225)
T ss_dssp             HHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTH
T ss_pred             HHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhH
Confidence             78889988876                  568999999999999999987643

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=87.56  E-value=2  Score=46.84  Aligned_cols=95  Identities=18%  Similarity=0.106  Sum_probs=75.9

Q ss_pred             CCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcc-----cccchhhhHHHhhHHHhcCCC---CCcchHHHHH
Q 004468          377 GKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKR-----KWKNDAQMAIRDCYNARRIDS---SSFRAHLYMS  448 (751)
Q Consensus       377 g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r-----~w~~d~y~al~d~~~a~~~~~---~~~~a~~~~~  448 (751)
                      |. +..|+..|.+++...+..      ...+.+.+.++...     .-.++.-.|+....+|+.++|   ....+++.++
T Consensus       193 g~-~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg  265 (474)
T 4abn_A          193 RH-VMDSVRQAKLAVQMDVLD------GRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRA  265 (474)
T ss_dssp             HH-HHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHH
T ss_pred             hh-HHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHH
Confidence            44 778899999999876554      34566666666543     112556678888999999999   9999999999


Q ss_pred             HHHHHhcchHHHHHHHHHhcccCCCChhhh
Q 004468          449 EALEQLCKYKEALDFAIAAQCLDPSNSVMA  478 (751)
Q Consensus       449 ~~l~~l~~~~~a~~~~~~~~~~~p~~~~~~  478 (751)
                      .++..+|++.+|..++.......|......
T Consensus       266 ~~~~~~g~~~~A~~~~~~al~l~p~~~~a~  295 (474)
T 4abn_A          266 TLHKYEESYGEALEGFSQAAALDPAWPEPQ  295 (474)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence            999999999999999999999999876443

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=87.50  E-value=7.5  Score=37.00  Aligned_cols=108  Identities=8%  Similarity=-0.012  Sum_probs=79.1

Q ss_pred             HHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhccc---------------ccchhhhHHHh
Q 004468          365 MLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRK---------------WKNDAQMAIRD  429 (751)
Q Consensus       365 ~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~---------------w~~d~y~al~d  429 (751)
                      .+...+......|. |..|+..|..++..++....-   ...+..++.++...+               -.++.-.|+..
T Consensus        43 a~~~lg~~~~~~~~-~~~A~~~~~~~l~~~P~~~~~---~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~  118 (225)
T 2yhc_A           43 VQLDLIYAYYKNAD-LPLAQAAIDRFIRLNPTHPNI---DYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSD  118 (225)
T ss_dssp             HHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCTTH---HHHHHHHHHHHHHHHC--------------CCHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCC-HHHHHHHHHHHHHHCcCCCcH---HHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHH
Confidence            34455566666677 999999999999988776221   123344444443211               13566778888


Q ss_pred             hHHHhcCCCCCcchH-----------------HHHHHHHHHhcchHHHHHHHHHhcccCCCChh
Q 004468          430 CYNARRIDSSSFRAH-----------------LYMSEALEQLCKYKEALDFAIAAQCLDPSNSV  476 (751)
Q Consensus       430 ~~~a~~~~~~~~~a~-----------------~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~~  476 (751)
                      ..+++...|.+..+.                 +.++..+...+++.+|+..++.+...+|....
T Consensus       119 ~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~  182 (225)
T 2yhc_A          119 FSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQA  182 (225)
T ss_dssp             HHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHH
T ss_pred             HHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCc
Confidence            999999999998765                 56788899999999999999999999997654

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=87.10  E-value=0.97  Score=40.81  Aligned_cols=68  Identities=10%  Similarity=-0.054  Sum_probs=56.8

Q ss_pred             hHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcchHHHHHHHHHHhcchHHHHHHHHHhcccCCCChh
Q 004468          406 CLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSV  476 (751)
Q Consensus       406 ~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~~  476 (751)
                      .+.+.+..+...+   +.-.|+....+++.++|.++.+++.++.++..++++.+|+.+........|....
T Consensus        38 ~~~~lg~~~~~~g---~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~  105 (151)
T 3gyz_A           38 DIYSYAYDFYNKG---RIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYT  105 (151)
T ss_dssp             HHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCH
T ss_pred             HHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcH
Confidence            3455566665443   3556888899999999999999999999999999999999999999999997654

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=87.10  E-value=1.9  Score=35.19  Aligned_cols=49  Identities=10%  Similarity=-0.042  Sum_probs=44.3

Q ss_pred             hHHHhhHHHhcCCCCCcchHHHHHHHHHHhcchHHHHHHHHHhcccCCC
Q 004468          425 MAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPS  473 (751)
Q Consensus       425 ~al~d~~~a~~~~~~~~~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~  473 (751)
                      .|..--.+|+.+||.++++.+.++...++.|++++|+.+.+.+....|.
T Consensus        27 ~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~   75 (93)
T 3bee_A           27 EVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP   75 (93)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred             HHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            4555567899999999999999999999999999999999999888887

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=86.91  E-value=3.3  Score=45.09  Aligned_cols=106  Identities=12%  Similarity=-0.077  Sum_probs=83.4

Q ss_pred             chhHHHHHHHHHhhhcCCCh-hHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCC
Q 004468          361 GKCRMLVEIARNSLEEGKHP-YYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSS  439 (751)
Q Consensus       361 ~~~~~l~~~~~~~~~~g~~~-~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~  439 (751)
                      .....+...+......+. | ..|+..|.+++...+..      ...+.+.+.++...   |+.-.|+....+++.++|.
T Consensus       100 ~~a~~~~~lg~~~~~~g~-~~~~A~~~~~~al~~~p~~------~~a~~~lg~~~~~~---g~~~~A~~~~~~al~~~p~  169 (474)
T 4abn_A          100 VEAQALMLKGKALNVTPD-YSPEAEVLLSKAVKLEPEL------VEAWNQLGEVYWKK---GDVTSAHTCFSGALTHCKN  169 (474)
T ss_dssp             CCHHHHHHHHHHHTSSSS-CCHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHH---TCHHHHHHHHHHHHTTCCC
T ss_pred             hhHHHHHHHHHHHHhccc-cHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHc---CCHHHHHHHHHHHHhhCCC
Confidence            344455556666666666 8 89999999999876554      34667777777765   4466788889999999999


Q ss_pred             CcchHHHHHHHHHHh---------cchHHHHHHHHHhcccCCCChhh
Q 004468          440 SFRAHLYMSEALEQL---------CKYKEALDFAIAAQCLDPSNSVM  477 (751)
Q Consensus       440 ~~~a~~~~~~~l~~l---------~~~~~a~~~~~~~~~~~p~~~~~  477 (751)
                       ..++..++.++..+         +++.+|..++.+.....|.....
T Consensus       170 -~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~  215 (474)
T 4abn_A          170 -KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRS  215 (474)
T ss_dssp             -HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred             -HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHH
Confidence             69999999999999         99999999999999888976543

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=86.72  E-value=1.3  Score=50.94  Aligned_cols=106  Identities=12%  Similarity=0.013  Sum_probs=84.1

Q ss_pred             cchhHHHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCC
Q 004468          360 LGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSS  439 (751)
Q Consensus       360 ~~~~~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~  439 (751)
                      ++....+...+...+..|+ |..|+..|.+++...+..      ...+.+++.++...+   +.-.|+....+|+.++|.
T Consensus       430 p~~~~~~~~~a~~~~~~g~-~~~A~~~~~~al~~~p~~------~~a~~~lg~~~~~~g---~~~~A~~~~~~al~l~P~  499 (681)
T 2pzi_A          430 SESVELPLMEVRALLDLGD-VAKATRKLDDLAERVGWR------WRLVWYRAVAELLTG---DYDSATKHFTEVLDTFPG  499 (681)
T ss_dssp             TTCSHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHCCC------HHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHSTT
T ss_pred             ccchhHHHHHHHHHHhcCC-HHHHHHHHHHHhccCcch------HHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCC
Confidence            3344445555566666666 888999999999877654      346778888877654   456789999999999999


Q ss_pred             CcchHHHHHHHHHHhcchHHHHHHHHHhcccCCCChh
Q 004468          440 SFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSV  476 (751)
Q Consensus       440 ~~~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~~  476 (751)
                      +..+++.++.++..+|++.+ ..++++.....|.+..
T Consensus       500 ~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~  535 (681)
T 2pzi_A          500 ELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVIS  535 (681)
T ss_dssp             CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHH
T ss_pred             ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHH
Confidence            99999999999999999999 9888888888887654

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=86.60  E-value=26  Score=36.24  Aligned_cols=180  Identities=12%  Similarity=0.193  Sum_probs=99.4

Q ss_pred             ccccEEeccCCCcEEEEEECCC----CCE--EEEE--eC--CCcEEEEeC--CCCeEEEEecc-----cCC-cceEEEEE
Q 004468           40 LSQERELEGHQGCVNAISWNSK----GSL--LISG--SD--DTHINVWSY--SSRKLLHSIET-----GHS-ANVFCTKF  101 (751)
Q Consensus        40 ~~~~~~L~gH~~~V~~l~~s~d----g~~--LaSg--s~--Dg~I~IWd~--~~~~~~~~l~~-----~h~-~~V~~v~f  101 (751)
                      .+.++.+..  +.+|.+..-|+    |+.  ||.+  -.  +.+|.||++  .++. +..+..     +.. ..+..+++
T Consensus        59 G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~~i~~~~~pv~t~~~~pyGlcl  135 (355)
T 3amr_A           59 GKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQSMTDPDHPIATAINEVYGFTL  135 (355)
T ss_dssp             SCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EEECSCTTSCEECCCSSCCCEEE
T ss_pred             CcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-eeeccccccCcCCCCCCeeEEEE
Confidence            344555543  67788777663    322  3333  33  578999966  4443 444411     011 45666777


Q ss_pred             --ecCCCCcEEEEEECCCcEEEEECCCC-CCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecC
Q 004468          102 --VPETSDELVVSGAGDAEVRLFNLSRF-SGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFR  178 (751)
Q Consensus       102 --sp~s~~~~l~sgs~Dg~V~vwd~~~~-~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr  178 (751)
                        +|.++..+++....+|.+..|++... .+.    ...+.++.+.- ...+-.|...+.. ..|..+-+|.-|..+|.+
T Consensus       136 y~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~----~~~~lVR~f~l-gsq~EgcvvDd~~-g~Lyv~eEd~GIw~~da~  209 (355)
T 3amr_A          136 YHSQKTGKYYAMVTGKEGEFEQYELKADKNGY----ISGKKVRAFKM-NSQTEGMAADDEY-GRLYIAEEDEAIWKFSAE  209 (355)
T ss_dssp             EECTTTCCEEEEEECSSSEEEEEEEEECTTSC----EEEEEEEEEEC-SSCEEEEEEETTT-TEEEEEETTTEEEEEECS
T ss_pred             EecCCCCcEEEEEECCCCeEEEEEEEeCCCCc----ccceEEEEecC-CCCcceEEEcCCC-CeEEEecccceEEEEeCC
Confidence              67642236778888999999999531 110    01244555553 3467788888744 566678888766666654


Q ss_pred             CCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEe--CCCCcEEEEEe-CCCeEEEEeCC
Q 004468          179 QGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDIS--STRPHLLLVGG-SDAFARLYDRR  246 (751)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~s--p~~~~~l~sgs-~D~~IriwD~~  246 (751)
                      .....         ....+...         ....-...+..|++-  +++..+|++++ .+....+||+.
T Consensus       210 p~~~~---------~~~~v~~~---------~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~  262 (355)
T 3amr_A          210 PDGGS---------NGTVIDRA---------DGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ  262 (355)
T ss_dssp             TTSCS---------CCEEEEEB---------SSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred             cCCCC---------CceEEEEe---------cCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence            32200         00111111         011122357777774  32223566655 67799999996

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=86.56  E-value=1.2  Score=38.49  Aligned_cols=68  Identities=19%  Similarity=0.105  Sum_probs=56.5

Q ss_pred             hHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcchHHHHHHHHHHhcchHHHHHHHHHhcccCCCChh
Q 004468          406 CLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSV  476 (751)
Q Consensus       406 ~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~~  476 (751)
                      .+.+++..+.+.+   +.-.|+....+++.++|.+..+++.++.|+..++++.+|+.++.......|....
T Consensus        15 ~~~~~G~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~   82 (126)
T 4gco_A           15 EEKNKGNEYFKKG---DYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIK   82 (126)
T ss_dssp             HHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhH
Confidence            3445666666543   3556888899999999999999999999999999999999999999888887653

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=86.39  E-value=5.2  Score=41.60  Aligned_cols=49  Identities=27%  Similarity=0.197  Sum_probs=24.2

Q ss_pred             hHHHhhHHHhcCCCCCcchHHHHHHHHHHhcchHHHHHHHHHhcccCCC
Q 004468          425 MAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPS  473 (751)
Q Consensus       425 ~al~d~~~a~~~~~~~~~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~  473 (751)
                      .|+....+++.++|....+++.++.++...|++.+|..++++.....|.
T Consensus       323 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~  371 (388)
T 1w3b_A          323 EAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT  371 (388)
T ss_dssp             HHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTT
T ss_pred             HHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            3444444445555555555555555555555555555554444444443

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=86.03  E-value=3.1  Score=37.94  Aligned_cols=50  Identities=10%  Similarity=0.121  Sum_probs=45.5

Q ss_pred             HHHhhHHHhcCCCCCcchHHHHHHHHHHhcchHHHHHHHHHhcccCCCCh
Q 004468          426 AIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNS  475 (751)
Q Consensus       426 al~d~~~a~~~~~~~~~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~  475 (751)
                      |+....+++.++|.++.+++.++.++...|++.+|..++.......|.+.
T Consensus        93 a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~  142 (176)
T 2r5s_A           93 ELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQ  142 (176)
T ss_dssp             HHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTT
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccC
Confidence            56667888999999999999999999999999999999999998888753

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=85.84  E-value=3.7  Score=42.08  Aligned_cols=100  Identities=10%  Similarity=0.052  Sum_probs=80.2

Q ss_pred             HHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcchHHH
Q 004468          367 VEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLY  446 (751)
Q Consensus       367 ~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~a~~~  446 (751)
                      ...+......|. +..|+..+..++...+..      ...+.+.+..+...+   +.-.|+....+++.++|....++..
T Consensus        68 ~~~~~~~~~~g~-~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~  137 (368)
T 1fch_A           68 FEEGLRRLQEGD-LPNAVLLFEAAVQQDPKH------MEAWQYLGTTQAENE---QELLAISALRRCLELKPDNQTALMA  137 (368)
T ss_dssp             HHHHHHHHHTTC-HHHHHHHHHHHHHSCTTC------HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHCCC-HHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHCc---CHHHHHHHHHHHHhcCCCCHHHHHH
Confidence            445666667777 889999999999866543      345566676666543   4567888899999999999999999


Q ss_pred             HHHHHHHhcchHHHHHHHHHhcccCCCChh
Q 004468          447 MSEALEQLCKYKEALDFAIAAQCLDPSNSV  476 (751)
Q Consensus       447 ~~~~l~~l~~~~~a~~~~~~~~~~~p~~~~  476 (751)
                      ++.++..+|++.+|..++.......|....
T Consensus       138 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  167 (368)
T 1fch_A          138 LAVSFTNESLQRQACEILRDWLRYTPAYAH  167 (368)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHTSTTTGG
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCcCcHH
Confidence            999999999999999999998888886543

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=85.67  E-value=0.56  Score=38.64  Aligned_cols=63  Identities=16%  Similarity=0.067  Sum_probs=50.6

Q ss_pred             HhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcchHHHHHHHHHHhcchHHHHHHHHHhcccCC
Q 004468          407 LCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDP  472 (751)
Q Consensus       407 ~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p  472 (751)
                      +.+.+.+++..   |+.-.|+....+++.++|....+++.++.++..++++.+|..+++......|
T Consensus        10 ~~~lg~~~~~~---g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~   72 (100)
T 3ma5_A           10 RYALAQEHLKH---DNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAR   72 (100)
T ss_dssp             HHHHHHHHHHT---TCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhh
Confidence            34455555543   3455688889999999999999999999999999999999999887765544

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=85.58  E-value=6.6  Score=39.25  Aligned_cols=109  Identities=12%  Similarity=-0.018  Sum_probs=81.0

Q ss_pred             HHHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCC---chhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCC
Q 004468          364 RMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGP---MLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSS  440 (751)
Q Consensus       364 ~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~---~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~  440 (751)
                      ..+...+.-....|+ +..|+..+.+++...+....+   ......+.+.+..+...+   +.-.|+....+++.++|.+
T Consensus       194 ~~~~~l~~~~~~~~~-~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~a~~~~~~~  269 (330)
T 3hym_B          194 FVMHEVGVVAFQNGE-WKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLK---KYAEALDYHRQALVLIPQN  269 (330)
T ss_dssp             HHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHSTTC
T ss_pred             HHHHHHHHHHHHccc-HHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHhhCccc
Confidence            344445555556666 788888888888765432221   112346667777776554   3556888888999999999


Q ss_pred             cchHHHHHHHHHHhcchHHHHHHHHHhcccCCCChh
Q 004468          441 FRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSV  476 (751)
Q Consensus       441 ~~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~~  476 (751)
                      ..++..++.++..+|++.+|..++.......|....
T Consensus       270 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  305 (330)
T 3hym_B          270 ASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTF  305 (330)
T ss_dssp             SHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHH
T ss_pred             hHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchH
Confidence            999999999999999999999999999998887654

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=85.45  E-value=18  Score=37.35  Aligned_cols=78  Identities=12%  Similarity=0.086  Sum_probs=48.5

Q ss_pred             CCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCce----eecccCCceeEEEEecC---CCCEEE
Q 004468           92 HSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSA----LYQCHTRRVKKLAVEVG---NPHVVW  164 (751)
Q Consensus        92 h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~----~~~~h~~~V~~l~~sp~---~~~~l~  164 (751)
                      .-.....++|.|+  |.++++--..|.|++++...+..        ..+.    .+.........|+++|+   ++.+++
T Consensus        30 gL~~P~~ia~~pd--G~llVter~~G~I~~v~~~~g~~--------~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv   99 (347)
T 3das_A           30 GLNSPWGLAPLPG--GDLLVSSRDEATITRVDAKTGRK--------TELGEVPGVSPSGEGGLLGIALSPDYASDHMVYA   99 (347)
T ss_dssp             CCSSEEEEEECTT--SCEEEEETTTCEEEEECTTTCCE--------EEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEE
T ss_pred             CCCCceEEEEcCC--CcEEEEEecCCEEEEEECCCCcE--------eeecccCceeecCCCCceeeEeccccccCCEEEE
Confidence            3456789999999  78877765589999887653211        1111    12223456789999984   455665


Q ss_pred             EEe--CCCcEEEEecCC
Q 004468          165 SAS--EDGTLRQHDFRQ  179 (751)
Q Consensus       165 s~s--~Dg~I~iwDlr~  179 (751)
                      +-+  .+..|.-|.+..
T Consensus       100 ~yt~~~~~~v~R~~~~~  116 (347)
T 3das_A          100 YFTSASDNRIVRMLYDE  116 (347)
T ss_dssp             EEECSSSEEEEEEEBCT
T ss_pred             EEecCCCCEEEEEEeCC
Confidence            433  445565566554

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=84.79  E-value=5  Score=41.12  Aligned_cols=98  Identities=12%  Similarity=0.063  Sum_probs=68.7

Q ss_pred             HHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcchHHH
Q 004468          367 VEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLY  446 (751)
Q Consensus       367 ~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~a~~~  446 (751)
                      ...+.-....|. +..|+..+..++...+..      ...+.+.+..+...   |+.-.|+....+++.++|....++..
T Consensus       221 ~~l~~~~~~~g~-~~~A~~~~~~al~~~~~~------~~~~~~l~~~~~~~---g~~~~A~~~~~~al~~~~~~~~~~~~  290 (368)
T 1fch_A          221 CGLGVLFNLSGE-YDKAVDCFTAALSVRPND------YLLWNKLGATLANG---NQSEEAVAAYRRALELQPGYIRSRYN  290 (368)
T ss_dssp             HHHHHHHHHTTC-HHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHcCC-HHHHHHHHHHHHHhCcCC------HHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCcHHHHHH
Confidence            334444455555 777888888887765443      23555666666553   34566777788888888888888888


Q ss_pred             HHHHHHHhcchHHHHHHHHHhcccCCCC
Q 004468          447 MSEALEQLCKYKEALDFAIAAQCLDPSN  474 (751)
Q Consensus       447 ~~~~l~~l~~~~~a~~~~~~~~~~~p~~  474 (751)
                      ++.++..+|++.+|..++.......|..
T Consensus       291 l~~~~~~~g~~~~A~~~~~~al~~~~~~  318 (368)
T 1fch_A          291 LGISCINLGAHREAVEHFLEALNMQRKS  318 (368)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            8888888888888888887776666654

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=84.75  E-value=2.5  Score=43.66  Aligned_cols=98  Identities=12%  Similarity=0.069  Sum_probs=78.8

Q ss_pred             HHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcchHH
Q 004468          366 LVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHL  445 (751)
Q Consensus       366 l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~a~~  445 (751)
                      +...+...+..|. +..|+..+..++...+..      ...+.+.+..+...   |+.-.|+....+++.++|....++.
T Consensus        68 ~~~~~~~~~~~g~-~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~  137 (365)
T 4eqf_A           68 AFEEGLKRLKEGD-LPVTILFMEAAILQDPGD------AEAWQFLGITQAEN---ENEQAAIVALQRCLELQPNNLKALM  137 (365)
T ss_dssp             HHHHHHHHHHHTC-HHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHCCC-HHHHHHHHHHHHHhCcCC------HHHHHHHHHHHHHC---CCHHHHHHHHHHHHhcCCCCHHHHH
Confidence            4456666777777 889999999999876554      34566667776654   3456788889999999999999999


Q ss_pred             HHHHHHHHhcchHHHHHHHHHhcccCCC
Q 004468          446 YMSEALEQLCKYKEALDFAIAAQCLDPS  473 (751)
Q Consensus       446 ~~~~~l~~l~~~~~a~~~~~~~~~~~p~  473 (751)
                      .++.++..+|++.+|..++.......|.
T Consensus       138 ~l~~~~~~~g~~~~A~~~~~~al~~~p~  165 (365)
T 4eqf_A          138 ALAVSYTNTSHQQDACEALKNWIKQNPK  165 (365)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCHH
T ss_pred             HHHHHHHccccHHHHHHHHHHHHHhCcc
Confidence            9999999999999999999888776664

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=84.66  E-value=10  Score=33.67  Aligned_cols=101  Identities=15%  Similarity=0.203  Sum_probs=73.7

Q ss_pred             HHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcchH
Q 004468          365 MLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAH  444 (751)
Q Consensus       365 ~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~a~  444 (751)
                      .+...+......|. +..++..+..++...+..      ...+.+.+..+...   ++.-.|+.-..+++.++|....++
T Consensus        44 ~~~~~~~~~~~~~~-~~~A~~~~~~~~~~~~~~------~~~~~~~a~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~  113 (186)
T 3as5_A           44 VALHLGIAYVKTGA-VDRGTELLERSLADAPDN------VKVATVLGLTYVQV---QKYDLAVPLLIKVAEANPINFNVR  113 (186)
T ss_dssp             HHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHH---TCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHh---cCHHHHHHHHHHHHhcCcHhHHHH
Confidence            34444555555666 888888888888765433      23455555555543   344567777788888999999999


Q ss_pred             HHHHHHHHHhcchHHHHHHHHHhcccCCCCh
Q 004468          445 LYMSEALEQLCKYKEALDFAIAAQCLDPSNS  475 (751)
Q Consensus       445 ~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~  475 (751)
                      +.++.++..++++.+|..++.......|...
T Consensus       114 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~  144 (186)
T 3as5_A          114 FRLGVALDNLGRFDEAIDSFKIALGLRPNEG  144 (186)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHcCcHHHHHHHHHHHHhcCccch
Confidence            9999999999999999999988887777654

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=84.65  E-value=6.3  Score=40.91  Aligned_cols=86  Identities=14%  Similarity=0.041  Sum_probs=45.4

Q ss_pred             hhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcchHHHHHHHHHHhcchHH
Q 004468          380 PYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKE  459 (751)
Q Consensus       380 ~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~a~~~~~~~l~~l~~~~~  459 (751)
                      +..|+..+..++...+..      ...+.+.+.++...+   +.-.|+....+++.++|.+..++..++.++...|++.+
T Consensus       253 ~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~  323 (388)
T 1w3b_A          253 IDLAIDTYRRAIELQPHF------PDAYCNLANALKEKG---SVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEE  323 (388)
T ss_dssp             HHHHHHHHHHHHHTCSSC------HHHHHHHHHHHHHHS---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHH
T ss_pred             HHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHH
Confidence            445555555555433222      123444444444332   23445555555666666666666666666666666666


Q ss_pred             HHHHHHHhcccCCCC
Q 004468          460 ALDFAIAAQCLDPSN  474 (751)
Q Consensus       460 a~~~~~~~~~~~p~~  474 (751)
                      |..++++.....|..
T Consensus       324 A~~~~~~al~~~p~~  338 (388)
T 1w3b_A          324 AVRLYRKALEVFPEF  338 (388)
T ss_dssp             HHHHHHHHTTSCTTC
T ss_pred             HHHHHHHHHhcCCCc
Confidence            666666665555543

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=84.58  E-value=6.1  Score=38.39  Aligned_cols=104  Identities=10%  Similarity=0.045  Sum_probs=77.0

Q ss_pred             HHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcchHH
Q 004468          366 LVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHL  445 (751)
Q Consensus       366 l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~a~~  445 (751)
                      +...+......|+ +..|+..+..++. .+.  .+......|.+.+..+...+   +.-.|+....+++.++|....++.
T Consensus        40 ~~~l~~~~~~~~~-~~~A~~~~~~a~~-~~~--~~~~~~~~~~~lg~~~~~~~---~~~~A~~~~~~a~~~~~~~~~~~~  112 (272)
T 3u4t_A           40 YNRRAVCYYELAK-YDLAQKDIETYFS-KVN--ATKAKSADFEYYGKILMKKG---QDSLAIQQYQAAVDRDTTRLDMYG  112 (272)
T ss_dssp             HHHHHHHHHHTTC-HHHHHHHHHHHHT-TSC--TTTCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHSTTCTHHHH
T ss_pred             HHHHHHHHHHHhh-HHHHHHHHHHHHh-ccC--chhHHHHHHHHHHHHHHHcc---cHHHHHHHHHHHHhcCcccHHHHH
Confidence            3344555555666 8888888888887 332  22222334667777776653   456788888899999999999999


Q ss_pred             HHHHHHHHhcchHHHHHHHHHhcccCCCChh
Q 004468          446 YMSEALEQLCKYKEALDFAIAAQCLDPSNSV  476 (751)
Q Consensus       446 ~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~~  476 (751)
                      .++.++..++++.+|..++.......|....
T Consensus       113 ~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~  143 (272)
T 3u4t_A          113 QIGSYFYNKGNFPLAIQYMEKQIRPTTTDPK  143 (272)
T ss_dssp             HHHHHHHHTTCHHHHHHHHGGGCCSSCCCHH
T ss_pred             HHHHHHHHccCHHHHHHHHHHHhhcCCCcHH
Confidence            9999999999999999999988888776653

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=84.29  E-value=2.4  Score=43.80  Aligned_cols=96  Identities=18%  Similarity=0.119  Sum_probs=65.9

Q ss_pred             HHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcchHHHH
Q 004468          368 EIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYM  447 (751)
Q Consensus       368 ~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~a~~~~  447 (751)
                      ..+......|. +..|+..+.+++...+..      ...+.+.+.++...   |+.-.|+....+++.++|.+..+++.+
T Consensus       218 ~l~~~~~~~g~-~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~l  287 (365)
T 4eqf_A          218 GLGVLFHLSGE-FNRAIDAFNAALTVRPED------YSLWNRLGATLANG---DRSEEAVEAYTRALEIQPGFIRSRYNL  287 (365)
T ss_dssp             HHHHHHHHHTC-HHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHCCC-HHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHc---CCHHHHHHHHHHHHhcCCCchHHHHHH
Confidence            33444444555 777788888877765543      33555666666553   345567777778888888888888888


Q ss_pred             HHHHHHhcchHHHHHHHHHhcccCCC
Q 004468          448 SEALEQLCKYKEALDFAIAAQCLDPS  473 (751)
Q Consensus       448 ~~~l~~l~~~~~a~~~~~~~~~~~p~  473 (751)
                      +.++..+|++.+|..++.......|.
T Consensus       288 ~~~~~~~g~~~~A~~~~~~al~~~~~  313 (365)
T 4eqf_A          288 GISCINLGAYREAVSNFLTALSLQRK  313 (365)
T ss_dssp             HHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence            88888888888888887776665554

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=83.88  E-value=50  Score=35.42  Aligned_cols=66  Identities=11%  Similarity=0.036  Sum_probs=40.2

Q ss_pred             CcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeec------ccCCceeEEEEecC---CCCEE
Q 004468           93 SANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQ------CHTRRVKKLAVEVG---NPHVV  163 (751)
Q Consensus        93 ~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~------~h~~~V~~l~~sp~---~~~~l  163 (751)
                      -.....++|.|+  |+++++-...+.|++++...+..        ..+..+.      ........|+|+|+   ++.++
T Consensus        26 l~~P~~~a~~pd--G~l~V~e~~gg~I~~~~~~~g~~--------~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lY   95 (454)
T 1cru_A           26 LNKPHALLWGPD--NQIWLTERATGKILRVNPESGSV--------KTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIY   95 (454)
T ss_dssp             CSSEEEEEECTT--SCEEEEETTTCEEEEECTTTCCE--------EEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEE
T ss_pred             CCCceEEEEcCC--CcEEEEEcCCCEEEEEECCCCcE--------eEEecCCccccccCCCCceeEEEECCCcCcCCEEE
Confidence            345779999999  78777754445688887543211        1111121      12455679999996   66666


Q ss_pred             EEEeC
Q 004468          164 WSASE  168 (751)
Q Consensus       164 ~s~s~  168 (751)
                      ++-+.
T Consensus        96 v~~s~  100 (454)
T 1cru_A           96 ISGTF  100 (454)
T ss_dssp             EEEEE
T ss_pred             EEEec
Confidence            66543

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=83.73  E-value=4.3  Score=38.57  Aligned_cols=100  Identities=13%  Similarity=0.123  Sum_probs=59.1

Q ss_pred             HHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcchHH
Q 004468          366 LVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHL  445 (751)
Q Consensus       366 l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~a~~  445 (751)
                      +...+.-....|. +..|+..+..++...+..      ...+...+..+...+   +.-.|+....+++.++|....+++
T Consensus        94 ~~~la~~~~~~~~-~~~A~~~~~~~~~~~~~~------~~~~~~~a~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~  163 (243)
T 2q7f_A           94 YYGAGNVYVVKEM-YKEAKDMFEKALRAGMEN------GDLFYMLGTVLVKLE---QPKLALPYLQRAVELNENDTEARF  163 (243)
T ss_dssp             HHHHHHHHHHTTC-HHHHHHHHHHHHHHTCCS------HHHHHHHHHHHHHTS---CHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHhcc-HHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhc---cHHHHHHHHHHHHHhCCccHHHHH
Confidence            3334444444555 666777777766654432      224445555555433   344556666666667777777777


Q ss_pred             HHHHHHHHhcchHHHHHHHHHhcccCCCCh
Q 004468          446 YMSEALEQLCKYKEALDFAIAAQCLDPSNS  475 (751)
Q Consensus       446 ~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~  475 (751)
                      .++.++...+++.+|..++.......|...
T Consensus       164 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~  193 (243)
T 2q7f_A          164 QFGMCLANEGMLDEALSQFAAVTEQDPGHA  193 (243)
T ss_dssp             HHHHHHHHHTCCHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Confidence            777777777777777766666666666543

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=83.28  E-value=45  Score=34.39  Aligned_cols=125  Identities=11%  Similarity=0.061  Sum_probs=69.9

Q ss_pred             cEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeE--EEEe---cccCCcceEEEEEecC--CCCcEEEEEE-
Q 004468           43 ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKL--LHSI---ETGHSANVFCTKFVPE--TSDELVVSGA-  114 (751)
Q Consensus        43 ~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~--~~~l---~~~h~~~V~~v~fsp~--s~~~~l~sgs-  114 (751)
                      +.++...-...+.|+|.|+|++|++--..|.|++++..+++.  +..+   .....+....|+|+|+  .++.+.++-+ 
T Consensus        24 ~~~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~  103 (347)
T 3das_A           24 LRTVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTS  103 (347)
T ss_dssp             EEEEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEEC
T ss_pred             eEEeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEec
Confidence            344444456778999999999888776689999998765543  2222   1233567899999995  2244444322 


Q ss_pred             -CCCcEEEEECCCCCCCCCCCCCCCCce-eec-ccCCceeEEEEecCCCCEEEEEeC
Q 004468          115 -GDAEVRLFNLSRFSGRGLDDNAITPSA-LYQ-CHTRRVKKLAVEVGNPHVVWSASE  168 (751)
Q Consensus       115 -~Dg~V~vwd~~~~~~~~~~~~~~~~~~-~~~-~h~~~V~~l~~sp~~~~~l~s~s~  168 (751)
                       .+..|.-|.+.............+.+. .+. .....-..|+|.| ++.++++.+.
T Consensus       104 ~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgp-DG~Lyvt~Gd  159 (347)
T 3das_A          104 ASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGP-DKMLYAGTGE  159 (347)
T ss_dssp             SSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECT-TSCEEEECBC
T ss_pred             CCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCC-CCCEEEEECC
Confidence             344555555543110000000011111 121 1122346799999 5688877654

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=82.94  E-value=32  Score=34.50  Aligned_cols=59  Identities=7%  Similarity=0.001  Sum_probs=30.0

Q ss_pred             EEEEEeCCCcEEEEeCCCCeEEEEeccc-CCcceEEEEEecCCCCcEEEEEEC----CC-------cEEEEECCCC
Q 004468           64 LLISGSDDTHINVWSYSSRKLLHSIETG-HSANVFCTKFVPETSDELVVSGAG----DA-------EVRLFNLSRF  127 (751)
Q Consensus        64 ~LaSgs~Dg~I~IWd~~~~~~~~~l~~~-h~~~V~~v~fsp~s~~~~l~sgs~----Dg-------~V~vwd~~~~  127 (751)
                      +++.|+.  .+.+||+.+.+....-... ....-.++. ..+  +.+++.|+.    ++       .+.+||+.+.
T Consensus        18 i~~~GG~--~~~~yd~~~~~W~~~~~~~~~~r~~~~~~-~~~--~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~   88 (318)
T 2woz_A           18 ILLVNDT--AAVAYDPMENECYLTALAEQIPRNHSSIV-TQQ--NQVYVVGGLYVDEENKDQPLQSYFFQLDNVSS   88 (318)
T ss_dssp             EEEECSS--EEEEEETTTTEEEEEEECTTSCSSEEEEE-CSS--SCEEEEESSCC-------CCCBEEEEEETTTT
T ss_pred             hhhcccc--ceEEECCCCCceecccCCccCCccceEEE-EEC--CEEEEECCcccCccccCCCccccEEEEeCCCC
Confidence            4444543  3788999877654321111 111222332 333  577777773    12       1677887753

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=82.80  E-value=13  Score=34.96  Aligned_cols=104  Identities=13%  Similarity=0.011  Sum_probs=79.0

Q ss_pred             hHHHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcc
Q 004468          363 CRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFR  442 (751)
Q Consensus       363 ~~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~  442 (751)
                      ...+...+......|. +..++..+..++...+..      ...+...+..+...   |+.-.|+.-..+++.++|....
T Consensus        57 ~~~~~~la~~~~~~~~-~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~---~~~~~A~~~~~~~~~~~~~~~~  126 (243)
T 2q7f_A           57 AIPYINFANLLSSVNE-LERALAFYDKALELDSSA------ATAYYGAGNVYVVK---EMYKEAKDMFEKALRAGMENGD  126 (243)
T ss_dssp             HHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHTCCSHH
T ss_pred             HHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCcc------hHHHHHHHHHHHHh---ccHHHHHHHHHHHHHhCCCCHH
Confidence            3444455566666666 888999999988865443      23455566666543   3456678888889999999999


Q ss_pred             hHHHHHHHHHHhcchHHHHHHHHHhcccCCCChh
Q 004468          443 AHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSV  476 (751)
Q Consensus       443 a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~~  476 (751)
                      ++..++.++..++++.+|..++.......|....
T Consensus       127 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~  160 (243)
T 2q7f_A          127 LFYMLGTVLVKLEQPKLALPYLQRAVELNENDTE  160 (243)
T ss_dssp             HHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHH
Confidence            9999999999999999999999998888886543

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=82.73  E-value=28  Score=39.78  Aligned_cols=158  Identities=10%  Similarity=0.078  Sum_probs=80.3

Q ss_pred             CCCCEEEEEeCC----CcEEEEeCCCCeEEEEe-c-----ccCCcceEEEEEec-CCCCcEEEEEECCC------cEEEE
Q 004468           60 SKGSLLISGSDD----THINVWSYSSRKLLHSI-E-----TGHSANVFCTKFVP-ETSDELVVSGAGDA------EVRLF  122 (751)
Q Consensus        60 ~dg~~LaSgs~D----g~I~IWd~~~~~~~~~l-~-----~~h~~~V~~v~fsp-~s~~~~l~sgs~Dg------~V~vw  122 (751)
                      .++.+++.||.+    ..+.+||+.+++....- .     ......-.++...+ +  +.+++.|+.++      .+.+|
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~--~~lyv~GG~~~~~~~~~dv~~y  473 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRN--NQLLLIGGRKAPHQGLSDNWIF  473 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTT--TEEEEECCBSSTTCBCCCCEEE
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccC--CEEEEEcCCCCCCCccccEEEE
Confidence            467788888753    35888888776533221 0     01111123334443 4  67888877543      47788


Q ss_pred             ECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCC--cEEEEecCCCCCCCCCCCCCCccceEEEec
Q 004468          123 NLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG--TLRQHDFRQGSSCPPAGSSHQECRNILLDL  200 (751)
Q Consensus       123 d~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg--~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~  200 (751)
                      |+.+..-..        +..+...... .+++... ++.+++.||.++  .+.+||+.+..                |..
T Consensus       474 d~~t~~W~~--------~~~~p~~R~~-h~~~~~~-~~~iyv~GG~~~~~~v~~yd~~t~~----------------W~~  527 (695)
T 2zwa_A          474 DMKTREWSM--------IKSLSHTRFR-HSACSLP-DGNVLILGGVTEGPAMLLYNVTEEI----------------FKD  527 (695)
T ss_dssp             ETTTTEEEE--------CCCCSBCCBS-CEEEECT-TSCEEEECCBCSSCSEEEEETTTTE----------------EEE
T ss_pred             eCCCCcEEE--------CCCCCCCccc-ceEEEEc-CCEEEEECCCCCCCCEEEEECCCCc----------------eEE
Confidence            887532111        1111111111 1222223 568888888765  68888887653                110


Q ss_pred             ccCceecccCCCCCccceEEEEEeCCCCcEEEEEeC--C-----CeEEEEeCCCCC
Q 004468          201 RCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGS--D-----AFARLYDRRMLP  249 (751)
Q Consensus       201 ~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~--D-----~~IriwD~~~~~  249 (751)
                      .....    ..+.......++.+....+.+++.|+.  +     ..+.+||+.+..
T Consensus       528 ~~~~g----~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~  579 (695)
T 2zwa_A          528 VTPKD----EFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAEN  579 (695)
T ss_dssp             CCCSS----GGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTC
T ss_pred             ccCCC----CCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCc
Confidence            00000    001111122335556543567777775  2     468899988754

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=82.66  E-value=23  Score=35.46  Aligned_cols=106  Identities=9%  Similarity=0.040  Sum_probs=54.0

Q ss_pred             CCCEEEEEeCC-----CcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECC-----CcEEEEECCCCCCC
Q 004468           61 KGSLLISGSDD-----THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD-----AEVRLFNLSRFSGR  130 (751)
Q Consensus        61 dg~~LaSgs~D-----g~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~D-----g~V~vwd~~~~~~~  130 (751)
                      ++++++.|+.+     ..+.+||+.+.+....-.......-.++... +  +.+++.|+.+     ..+.+||+.+..-.
T Consensus       121 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~--~~iyv~GG~~~~~~~~~~~~yd~~~~~W~  197 (308)
T 1zgk_A          121 DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL-N--RLLYAVGGFDGTNRLNSAECYYPERNEWR  197 (308)
T ss_dssp             TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-T--TEEEEECCBCSSCBCCCEEEEETTTTEEE
T ss_pred             CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE-C--CEEEEEeCCCCCCcCceEEEEeCCCCeEe
Confidence            56777777643     3588889877654322111111111122222 3  5777777765     45888888754221


Q ss_pred             CCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCC-----CcEEEEecCCC
Q 004468          131 GLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED-----GTLRQHDFRQG  180 (751)
Q Consensus       131 ~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~D-----g~I~iwDlr~~  180 (751)
                      .        +..+....... +++..  ++.+++.|+.+     ..+.+||+.+.
T Consensus       198 ~--------~~~~p~~r~~~-~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~  241 (308)
T 1zgk_A          198 M--------ITAMNTIRSGA-GVCVL--HNCIYAAGGYDGQDQLNSVERYDVETE  241 (308)
T ss_dssp             E--------CCCCSSCCBSC-EEEEE--TTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred             e--------CCCCCCccccc-eEEEE--CCEEEEEeCCCCCCccceEEEEeCCCC
Confidence            1        11111111111 22222  55788888765     45777777654

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=82.41  E-value=14  Score=38.09  Aligned_cols=111  Identities=14%  Similarity=0.150  Sum_probs=62.3

Q ss_pred             CEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecC-CCCcEEEEE-ECCCcEEEEECCCCCCCCCCCCCCCCc
Q 004468           63 SLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPE-TSDELVVSG-AGDAEVRLFNLSRFSGRGLDDNAITPS  140 (751)
Q Consensus        63 ~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~-s~~~~l~sg-s~Dg~V~vwd~~~~~~~~~~~~~~~~~  140 (751)
                      .+++.++.||.|.-.|..+|+.+.++......++..+.-... .++..++.. ..||.|..++...+..          .
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~----------~   80 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQ----------K   80 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEE----------E
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcE----------E
Confidence            478899999999999999999999985442223332211110 012333333 5789998888765311          1


Q ss_pred             eeecc----cCCceeE---EEE-ec---CCCCEEEEEeCCCcEEEEecCCCCCC
Q 004468          141 ALYQC----HTRRVKK---LAV-EV---GNPHVVWSASEDGTLRQHDFRQGSSC  183 (751)
Q Consensus       141 ~~~~~----h~~~V~~---l~~-sp---~~~~~l~s~s~Dg~I~iwDlr~~~~~  183 (751)
                      ..+.-    ...++..   ... .+   ..+..+.+|+.+|++...|+++++..
T Consensus        81 ~~~~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~  134 (339)
T 2be1_A           81 LPLSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEII  134 (339)
T ss_dssp             EEEEHHHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEE
T ss_pred             eeeccccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEE
Confidence            11100    1111111   000 00   02346678888999988888887654

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=82.16  E-value=2.5  Score=35.89  Aligned_cols=67  Identities=16%  Similarity=0.107  Sum_probs=54.2

Q ss_pred             HhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcchHHHHHHHHHHhcchHHHHHHHHHhcccCCCChh
Q 004468          407 LCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSV  476 (751)
Q Consensus       407 ~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~~  476 (751)
                      +..++..++..+   +.-.|+....+++.++|.+..+++.++.++..++++.+|+.++.......|....
T Consensus         7 ~~~~g~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~   73 (126)
T 3upv_A            7 ARLEGKEYFTKS---DWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVR   73 (126)
T ss_dssp             HHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHHHhc---CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHH
Confidence            334444444433   3456788888999999999999999999999999999999999999988887653

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=82.15  E-value=15  Score=37.73  Aligned_cols=53  Identities=11%  Similarity=0.188  Sum_probs=28.5

Q ss_pred             CCCEEEEEeC-C---------CcEEEEeCCCCeEEEEeccc-CCcceEEEEEecCCCCcEEEEEECC
Q 004468           61 KGSLLISGSD-D---------THINVWSYSSRKLLHSIETG-HSANVFCTKFVPETSDELVVSGAGD  116 (751)
Q Consensus        61 dg~~LaSgs~-D---------g~I~IWd~~~~~~~~~l~~~-h~~~V~~v~fsp~s~~~~l~sgs~D  116 (751)
                      ++++++.|+. +         ..+.+||+.+.+-...-... ....-.++.. .+  +.+++.|+.+
T Consensus        65 ~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~-~~--~~iyv~GG~~  128 (357)
T 2uvk_A           65 DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFV-HN--GKAYVTGGVN  128 (357)
T ss_dssp             TTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCCSSCCSSEEEEE-ET--TEEEEEECCC
T ss_pred             CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCCCcccccceEEE-EC--CEEEEEeCcC
Confidence            5777777775 2         46888998876543221111 1111112222 34  6788888765

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=82.06  E-value=72  Score=38.80  Aligned_cols=77  Identities=18%  Similarity=0.150  Sum_probs=53.5

Q ss_pred             CCcEEEEEECCC------CCEEEEEeC-CCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEE
Q 004468           50 QGCVNAISWNSK------GSLLISGSD-DTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLF  122 (751)
Q Consensus        50 ~~~V~~l~~s~d------g~~LaSgs~-Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vw  122 (751)
                      .+.|.|+++.|.      ++++|.|.. |++|+|+++.+.+.+.....+-.....++.+..-.+..+|..|-.||.+.-+
T Consensus       553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~  632 (1158)
T 3ei3_A          553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYF  632 (1158)
T ss_dssp             SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEE
T ss_pred             CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEE
Confidence            568999999863      469999997 9999999998766655432222234455544432214678889999998777


Q ss_pred             ECCC
Q 004468          123 NLSR  126 (751)
Q Consensus       123 d~~~  126 (751)
                      .+..
T Consensus       633 ~~d~  636 (1158)
T 3ei3_A          633 GLNI  636 (1158)
T ss_dssp             EECT
T ss_pred             EEcC
Confidence            7654

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=81.72  E-value=3.8  Score=39.25  Aligned_cols=101  Identities=15%  Similarity=0.083  Sum_probs=80.2

Q ss_pred             hhHHHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCC-
Q 004468          362 KCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSS-  440 (751)
Q Consensus       362 ~~~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~-  440 (751)
                      ....+...+...+..|+ |..|+..+..++... ..      ...+..++..+...+   +.-.|+....+++.++|.. 
T Consensus         4 ~a~~~~~~g~~~~~~~~-~~~A~~~~~~a~~~~-~~------~~~~~~~~~~~~~~~---~~~~A~~~~~~a~~~~~~~~   72 (258)
T 3uq3_A            4 MADKEKAEGNKFYKARQ-FDEAIEHYNKAWELH-KD------ITYLNNRAAAEYEKG---EYETAISTLNDAVEQGREMR   72 (258)
T ss_dssp             HHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHS-CC------THHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHhh-cc------HHHHHHHHHHHHHcc---cHHHHHHHHHHHHHhCcccc
Confidence            34556667777788888 999999999999876 32      245667777776654   4556888888899988877 


Q ss_pred             ------cchHHHHHHHHHHhcchHHHHHHHHHhcccCCC
Q 004468          441 ------FRAHLYMSEALEQLCKYKEALDFAIAAQCLDPS  473 (751)
Q Consensus       441 ------~~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~  473 (751)
                            ..+++.++.++..++++.+|..++.......|.
T Consensus        73 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~  111 (258)
T 3uq3_A           73 ADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT  111 (258)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred             cchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCch
Confidence                  689999999999999999999999988887665

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=81.52  E-value=7.4  Score=42.27  Aligned_cols=108  Identities=16%  Similarity=0.046  Sum_probs=72.7

Q ss_pred             HHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhccccc-------chhhhHHHhhHHHhcCCCCCcc
Q 004468          370 ARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWK-------NDAQMAIRDCYNARRIDSSSFR  442 (751)
Q Consensus       370 ~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~-------~d~y~al~d~~~a~~~~~~~~~  442 (751)
                      +.-....|. +..|+..+..++...+........-..+..++..+....-.       |+.-.|+....+++.++|.+..
T Consensus       385 ~~~~~~~g~-~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~  463 (537)
T 3fp2_A          385 AEILTDRGD-FDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQ  463 (537)
T ss_dssp             HHHHHHTTC-HHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHhCC-HHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHH
Confidence            344444455 66777777777665544322211111234444444433111       5566788888999999999999


Q ss_pred             hHHHHHHHHHHhcchHHHHHHHHHhcccCCCChhhh
Q 004468          443 AHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMA  478 (751)
Q Consensus       443 a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~~~~  478 (751)
                      +++.++.++..+|++.+|..+++......|......
T Consensus       464 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  499 (537)
T 3fp2_A          464 AKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKL  499 (537)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHH
Confidence            999999999999999999999999999989776543

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=81.26  E-value=7.1  Score=38.89  Aligned_cols=101  Identities=15%  Similarity=0.026  Sum_probs=78.5

Q ss_pred             HHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcchHH
Q 004468          366 LVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHL  445 (751)
Q Consensus       366 l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~a~~  445 (751)
                      +...+...+..|. +..|+..+..++...+..      ...+...+..+...+   +.-.|+....+++.++|.+..++.
T Consensus        24 ~~~~a~~~~~~~~-~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~---~~~~A~~~~~~a~~~~~~~~~~~~   93 (327)
T 3cv0_A           24 PMEEGLSMLKLAN-LAEAALAFEAVCQAAPER------EEAWRSLGLTQAENE---KDGLAIIALNHARMLDPKDIAVHA   93 (327)
T ss_dssp             HHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHhcc-HHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcCcCCHHHHH
Confidence            4456666677777 889999999999876543      234555666665543   345678888889999999999999


Q ss_pred             HHHHHHHHhcchHHHHHHHHHhcccCCCChh
Q 004468          446 YMSEALEQLCKYKEALDFAIAAQCLDPSNSV  476 (751)
Q Consensus       446 ~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~~  476 (751)
                      .++.++...+++.+|..++.......|....
T Consensus        94 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~  124 (327)
T 3cv0_A           94 ALAVSHTNEHNANAALASLRAWLLSQPQYEQ  124 (327)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTSTTTTT
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCccHH
Confidence            9999999999999999999888877776543

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=81.16  E-value=11  Score=37.57  Aligned_cols=101  Identities=14%  Similarity=0.066  Sum_probs=59.0

Q ss_pred             HHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcchH
Q 004468          365 MLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAH  444 (751)
Q Consensus       365 ~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~a~  444 (751)
                      .+...+...+..|. |..|+..+..++...+....      .+...+..+...   |+.-.|+....+++..+|.+..++
T Consensus        24 ~~~~~a~~~~~~g~-~~~A~~~~~~~l~~~p~~~~------~~~~~~~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~   93 (330)
T 3hym_B           24 VVVSLAERHYYNCD-FKMCYKLTSVVMEKDPFHAS------CLPVHIGTLVEL---NKANELFYLSHKLVDLYPSNPVSW   93 (330)
T ss_dssp             THHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCTT------THHHHHHHHHHH---TCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred             HHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCChh------hHHHHHHHHHHh---hhHHHHHHHHHHHHHhCcCCHHHH
Confidence            34455666666666 77888888887776655421      222223333222   233445555666666666666666


Q ss_pred             HHHHHHHHHhc-chHHHHHHHHHhcccCCCCh
Q 004468          445 LYMSEALEQLC-KYKEALDFAIAAQCLDPSNS  475 (751)
Q Consensus       445 ~~~~~~l~~l~-~~~~a~~~~~~~~~~~p~~~  475 (751)
                      +.++.++...+ ++.+|..++.......|...
T Consensus        94 ~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~  125 (330)
T 3hym_B           94 FAVGCYYLMVGHKNEHARRYLSKATTLEKTYG  125 (330)
T ss_dssp             HHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCT
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHhCCccH
Confidence            66666666666 66666666666666555543

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=81.06  E-value=15  Score=35.01  Aligned_cols=105  Identities=14%  Similarity=0.017  Sum_probs=72.6

Q ss_pred             HHHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcch
Q 004468          364 RMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRA  443 (751)
Q Consensus       364 ~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~a  443 (751)
                      ..+...+.-....|. +..++..+..++. .+.  .+ .....+.+.+..+...   |+.-.|+....+++.++|....+
T Consensus       106 ~~~~~la~~~~~~g~-~~~A~~~~~~~~~-~~~--~~-~~~~~~~~la~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~  177 (252)
T 2ho1_A          106 RVLNNYGGFLYEQKR-YEEAYQRLLEASQ-DTL--YP-ERSRVFENLGLVSLQM---KKPAQAKEYFEKSLRLNRNQPSV  177 (252)
T ss_dssp             HHHHHHHHHHHHTTC-HHHHHHHHHHHTT-CTT--CT-THHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCSCCHHH
T ss_pred             HHHHHHHHHHHHHhH-HHHHHHHHHHHHh-Ccc--Cc-ccHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhcCcccHHH
Confidence            334445555556666 7788888888887 111  11 1123555666666554   34556777778888888888888


Q ss_pred             HHHHHHHHHHhcchHHHHHHHHHhcccCCCChh
Q 004468          444 HLYMSEALEQLCKYKEALDFAIAAQCLDPSNSV  476 (751)
Q Consensus       444 ~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~~  476 (751)
                      ++.++.++..++++.+|..++.......|....
T Consensus       178 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~  210 (252)
T 2ho1_A          178 ALEMADLLYKEREYVPARQYYDLFAQGGGQNAR  210 (252)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHH
Confidence            888999999999999999888888877776543

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=80.91  E-value=34  Score=35.29  Aligned_cols=79  Identities=10%  Similarity=0.200  Sum_probs=44.7

Q ss_pred             cceEEEEEecCCCCc-EEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecC---CCCEEEEEeC-
Q 004468           94 ANVFCTKFVPETSDE-LVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVG---NPHVVWSASE-  168 (751)
Q Consensus        94 ~~V~~v~fsp~s~~~-~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~---~~~~l~s~s~-  168 (751)
                      .....++|.|+  |+ ++++ ...+.|++++........+.    .....+.........|+|+|+   ++.++++-+. 
T Consensus        18 ~~P~~i~~~pd--G~~l~V~-e~~G~i~~~~~~g~~~~~~~----~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~   90 (353)
T 2g8s_A           18 DHPWALAFLPD--NHGMLIT-LRGGELRHWQAGKGLSAPLS----GVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEV   90 (353)
T ss_dssp             SSEEEEEECST--TCCEEEE-ETTTEEEEEETTTEECCCCB----SCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEE
T ss_pred             CCcEEEEEcCC--CCEEEEE-eCCceEEEEeCCCceeeEec----CCcccccCCCCCceeEEECCCCCCCCEEEEEEeCC
Confidence            45689999999  77 5554 56799999985321000000    000111122345688999995   5666666443 


Q ss_pred             ------CCcEEEEecCC
Q 004468          169 ------DGTLRQHDFRQ  179 (751)
Q Consensus       169 ------Dg~I~iwDlr~  179 (751)
                            ...|..|++..
T Consensus        91 ~~~g~~~~~v~r~~~~~  107 (353)
T 2g8s_A           91 GDDGKAGTAVGYGRLSD  107 (353)
T ss_dssp             CSSSCEEEEEEEEEECT
T ss_pred             CCCCCceeEEEEEEECC
Confidence                  22455566543

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=80.89  E-value=14  Score=34.11  Aligned_cols=96  Identities=11%  Similarity=0.021  Sum_probs=59.1

Q ss_pred             HHHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcch
Q 004468          364 RMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRA  443 (751)
Q Consensus       364 ~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~a  443 (751)
                      ..+...+......|. +..++..+..++...+..      ...+...+..+...   |+.-.|+....+++.++|....+
T Consensus         9 ~~~~~~~~~~~~~~~-~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~---~~~~~A~~~~~~a~~~~~~~~~~   78 (225)
T 2vq2_A            9 NIKTQLAMEYMRGQD-YRQATASIEDALKSDPKN------ELAWLVRAEIYQYL---KVNDKAQESFRQALSIKPDSAEI   78 (225)
T ss_dssp             HHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHHHHHhh-HHHHHHHHHHHHHhCccc------hHHHHHHHHHHHHc---CChHHHHHHHHHHHHhCCCChHH
Confidence            334444555555565 667777777777655433      22444455554433   23445666666777777777777


Q ss_pred             HHHHHHHHHHh-cchHHHHHHHHHhcc
Q 004468          444 HLYMSEALEQL-CKYKEALDFAIAAQC  469 (751)
Q Consensus       444 ~~~~~~~l~~l-~~~~~a~~~~~~~~~  469 (751)
                      +..++.++... +++.+|..++.....
T Consensus        79 ~~~l~~~~~~~~~~~~~A~~~~~~~~~  105 (225)
T 2vq2_A           79 NNNYGWFLCGRLNRPAESMAYFDKALA  105 (225)
T ss_dssp             HHHHHHHHHTTTCCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHHc
Confidence            77777777777 777777777766655

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=80.51  E-value=1.9  Score=37.22  Aligned_cols=52  Identities=17%  Similarity=0.081  Sum_probs=45.2

Q ss_pred             hhhhHHHhhHHHhcCCCCCcchHHHHHHHHHHhcchHHHHHHHHHhcccCCC
Q 004468          422 DAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPS  473 (751)
Q Consensus       422 d~y~al~d~~~a~~~~~~~~~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~  473 (751)
                      +.-.|+....+|+.++|.+..++..++.++..++++.+|+.+........|.
T Consensus        23 ~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~   74 (127)
T 4gcn_A           23 DFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRE   74 (127)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcc
Confidence            3456788888999999999999999999999999999999988877665553

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=80.33  E-value=18  Score=34.86  Aligned_cols=101  Identities=15%  Similarity=0.020  Sum_probs=75.6

Q ss_pred             HHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcc---
Q 004468          366 LVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFR---  442 (751)
Q Consensus       366 l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~---  442 (751)
                      +...+...+..|+ +..|+..+.+++...+..      ...+..++..+...+   +.-.|+..+.+++. .+.+..   
T Consensus         6 ~~~~a~~~~~~~~-~~~A~~~~~~~l~~~p~~------~~~~~~l~~~~~~~~---~~~~A~~~~~~a~~-~~~~~~~~~   74 (272)
T 3u4t_A            6 EFRYADFLFKNNN-YAEAIEVFNKLEAKKYNS------PYIYNRRAVCYYELA---KYDLAQKDIETYFS-KVNATKAKS   74 (272)
T ss_dssp             HHHHHHHHHTTTC-HHHHHHHHHHHHHTTCCC------STTHHHHHHHHHHTT---CHHHHHHHHHHHHT-TSCTTTCCH
T ss_pred             HHHHHHHHHHhcC-HHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHHh---hHHHHHHHHHHHHh-ccCchhHHH
Confidence            3455666677777 889999999999877654      224566676666544   35567888888888 444443   


Q ss_pred             -hHHHHHHHHHHhcchHHHHHHHHHhcccCCCChhh
Q 004468          443 -AHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVM  477 (751)
Q Consensus       443 -a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~~~  477 (751)
                       +++.++.++..++++.+|+.++.......|.....
T Consensus        75 ~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~  110 (272)
T 3u4t_A           75 ADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDM  110 (272)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHH
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHH
Confidence             48899999999999999999999998888876543

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=80.33  E-value=11  Score=31.07  Aligned_cols=86  Identities=24%  Similarity=0.202  Sum_probs=45.6

Q ss_pred             hhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcchHHHHHHHHHHhcchHH
Q 004468          380 PYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKE  459 (751)
Q Consensus       380 ~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~a~~~~~~~l~~l~~~~~  459 (751)
                      +..++..+..++...+..      ...+...+..+...   ++.-.|+.-..+++.+.|....+++.++.++...+++.+
T Consensus        17 ~~~A~~~~~~~~~~~~~~------~~~~~~~a~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~   87 (136)
T 2fo7_A           17 YDEAIEYYQKALELDPRS------AEAWYNLGNAYYKQ---GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDE   87 (136)
T ss_dssp             HHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHH---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHH
T ss_pred             HHHHHHHHHHHHHcCCcc------hhHHHHHHHHHHHh---cCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHHH
Confidence            555556666555543221      12233333333322   233345555555666666666666666666666666666


Q ss_pred             HHHHHHHhcccCCCC
Q 004468          460 ALDFAIAAQCLDPSN  474 (751)
Q Consensus       460 a~~~~~~~~~~~p~~  474 (751)
                      |..++.......|..
T Consensus        88 A~~~~~~~~~~~~~~  102 (136)
T 2fo7_A           88 AIEYYQKALELDPRS  102 (136)
T ss_dssp             HHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHhCCCC
Confidence            666666655555543

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=80.23  E-value=56  Score=33.51  Aligned_cols=63  Identities=8%  Similarity=0.041  Sum_probs=37.5

Q ss_pred             CCcEEEEEECCC----CCEEEEEeCC-----CcEEEEeCCCCe-----EEE-Eec--ccCCcceEEEEEecCCCCcEEEE
Q 004468           50 QGCVNAISWNSK----GSLLISGSDD-----THINVWSYSSRK-----LLH-SIE--TGHSANVFCTKFVPETSDELVVS  112 (751)
Q Consensus        50 ~~~V~~l~~s~d----g~~LaSgs~D-----g~I~IWd~~~~~-----~~~-~l~--~~h~~~V~~v~fsp~s~~~~l~s  112 (751)
                      ....+.|+|+|+    +.+.++-...     ..|..|+...+.     .+. .+.  .+.......++|.|+  |.++++
T Consensus        74 ~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pd--G~Lyv~  151 (352)
T 2ism_A           74 ESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPD--GMLYVT  151 (352)
T ss_dssp             TCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTT--SCEEEE
T ss_pred             CCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCC--CCEEEE
Confidence            456889999998    4555544432     568888876431     222 232  111123468999998  776666


Q ss_pred             EE
Q 004468          113 GA  114 (751)
Q Consensus       113 gs  114 (751)
                      .+
T Consensus       152 ~G  153 (352)
T 2ism_A          152 TG  153 (352)
T ss_dssp             CC
T ss_pred             EC
Confidence            43

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=80.22  E-value=6.7  Score=39.12  Aligned_cols=99  Identities=13%  Similarity=0.048  Sum_probs=73.3

Q ss_pred             HHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcchH
Q 004468          365 MLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAH  444 (751)
Q Consensus       365 ~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~a~  444 (751)
                      .+...+......|. +..++..+..++...+..      ...+.+.+..+...   |+.-.|+....+++.++|....++
T Consensus       174 ~~~~la~~~~~~~~-~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~---~~~~~A~~~~~~a~~~~~~~~~~~  243 (327)
T 3cv0_A          174 LHASLGVLYNLSNN-YDSAAANLRRAVELRPDD------AQLWNKLGATLANG---NRPQEALDAYNRALDINPGYVRVM  243 (327)
T ss_dssp             HHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHHHHhcc-HHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHc---CCHHHHHHHHHHHHHcCCCCHHHH
Confidence            33444455555566 778888888888765443      23555666666653   345667888888899999999999


Q ss_pred             HHHHHHHHHhcchHHHHHHHHHhcccCCC
Q 004468          445 LYMSEALEQLCKYKEALDFAIAAQCLDPS  473 (751)
Q Consensus       445 ~~~~~~l~~l~~~~~a~~~~~~~~~~~p~  473 (751)
                      +.++.++..+|++.+|..+++......|.
T Consensus       244 ~~l~~~~~~~g~~~~A~~~~~~a~~~~~~  272 (327)
T 3cv0_A          244 YNMAVSYSNMSQYDLAAKQLVRAIYMQVG  272 (327)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHhCCc
Confidence            99999999999999999998888777776

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=80.14  E-value=57  Score=33.54  Aligned_cols=111  Identities=13%  Similarity=0.107  Sum_probs=57.3

Q ss_pred             CCcEEEEEECCC----CCEEEEEeC---C----CcEEEEeCCCC-------eEE-EEecccCCcceEEEEEecCCCCcEE
Q 004468           50 QGCVNAISWNSK----GSLLISGSD---D----THINVWSYSSR-------KLL-HSIETGHSANVFCTKFVPETSDELV  110 (751)
Q Consensus        50 ~~~V~~l~~s~d----g~~LaSgs~---D----g~I~IWd~~~~-------~~~-~~l~~~h~~~V~~v~fsp~s~~~~l  110 (751)
                      .+....|+|+|+    +.+.++-+.   +    ..|..|+....       +.+ ..+..+.......++|.|+  |.++
T Consensus        72 ~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pD--G~Ly  149 (354)
T 3a9g_A           72 EAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPD--GMLY  149 (354)
T ss_dssp             TCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTT--SCEE
T ss_pred             CCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCC--CcEE
Confidence            356889999997    555555442   3    56777776543       111 1121111123467999998  7777


Q ss_pred             EEEECC-------------CcEEEEECCCCCCCCCCCCCC-CCceeecccCCceeEEEEecCCCCEEEEE
Q 004468          111 VSGAGD-------------AEVRLFNLSRFSGRGLDDNAI-TPSALYQCHTRRVKKLAVEVGNPHVVWSA  166 (751)
Q Consensus       111 ~sgs~D-------------g~V~vwd~~~~~~~~~~~~~~-~~~~~~~~h~~~V~~l~~sp~~~~~l~s~  166 (751)
                      ++.+..             +.|.-.+..   +.....+.. .....-.+|.. ...++|+|+.+.++++-
T Consensus       150 vt~G~~~~~~~~~d~~~~~G~I~ri~~d---G~~p~~npf~~~~i~a~G~rn-p~Gla~d~~~g~l~v~d  215 (354)
T 3a9g_A          150 ITTGDAADPRLAQDLSSLAGKILRVDEE---GRPPADNPFPNSPIWSYGHRN-PQGIDWHRASGVMVATE  215 (354)
T ss_dssp             EECCCTTCGGGGTCTTCCSSEEEEECTT---SCCCTTSSSTTCCEEEECCSC-CCEEEECTTTCCEEEEE
T ss_pred             EEECCCCCCccccCCCCCCeEEEEEcCC---CCCCCCCCCCCCcEEEEccCC-cceEEEeCCCCCEEEEe
Confidence            764321             344444443   111101100 01111234433 46899999666666554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	751
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	3e-12
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	3e-04
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	7e-12
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	8e-10
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-09
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-06
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	7e-05
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	0.002
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	8e-11
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	0.002
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-10
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	4e-10
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-07
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-07
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	5e-06
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	6e-06
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	9e-10
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-09
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	5e-07
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	3e-05
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	0.002
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	1e-09
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	3e-08
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	3e-05
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-09
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	9e-06
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-05
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	0.004
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	4e-09
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	1e-06
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	0.003
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	5e-09
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	1e-06
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	4e-04
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-08
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	3e-06
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	2e-08
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	8e-04
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	3e-08
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	7e-06
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	1e-04
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	4e-04
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	2e-06
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	8e-05
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	4e-06
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	7e-06
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	1e-04
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	2e-04
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	0.002
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	2e-04
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	8e-04
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	0.002
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	0.004

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 66.8 bits (161), Expect = 3e-12
 Identities = 30/244 (12%), Positives = 71/244 (29%), Gaps = 25/244 (10%)

Query: 46  LEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIE-----TGHSANVFCTK 100
            + H   + ++S  +     +S S D ++ VW        +  +       H + +    
Sbjct: 10  GKAHDADIFSVSACNS--FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVD 67

Query: 101 FVPETS-----DELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAV 155
            +           LV + +   ++  + ++R                          L  
Sbjct: 68  VLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKW 127

Query: 156 EVGNPHVVW----SASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADP 211
              N  ++     +    GT     F   +    + + +      L       + ++  P
Sbjct: 128 GASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLEL-------QGTVESP 180

Query: 212 PKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMH 271
              +    S DIS     L+  G ++   ++ +   L PL + + + S     N    + 
Sbjct: 181 MTPSQFATSVDISER--GLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVK 238

Query: 272 LSEH 275
            S  
Sbjct: 239 FSPQ 242

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.8 bits (96), Expect = 3e-04
 Identities = 19/125 (15%), Positives = 39/125 (31%), Gaps = 2/125 (1%)

Query: 12  YDMLDTRHTDTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDD 71
                   T    +    +   S              H   V ++S+N  G  L S   D
Sbjct: 251 DSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWD 310

Query: 72  THINVWSYSSRKLLHSIETGHSANVFCTKF-VPETSDELVVSGAGDAEVRLFNLSRFSGR 130
             +  W   +++ + ++   H  ++   +  +        ++  G  +V+       SG 
Sbjct: 311 GKLRFWDVKTKERITTL-NMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGM 369

Query: 131 GLDDN 135
           G D N
Sbjct: 370 GADLN 374

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 64.8 bits (156), Expect = 7e-12
 Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 3/79 (3%)

Query: 44  RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP 103
             L GH   V  + ++S G  ++S +DD  + VW Y +++ + ++   H   V    F  
Sbjct: 241 MTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTL-NAHEHFVTSLDFHK 299

Query: 104 ETSDELVVSGAGDAEVRLF 122
             +   VV+G+ D  V+++
Sbjct: 300 --TAPYVVTGSVDQTVKVW 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 58.6 bits (140), Expect = 8e-10
 Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 1/65 (1%)

Query: 39  RLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFC 98
           R  ++  L GH+  V  + ++   S+++S S+D  I VW Y +     +++ GH+ +V  
Sbjct: 6   RPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLK-GHTDSVQD 64

Query: 99  TKFVP 103
             F  
Sbjct: 65  ISFDH 69

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 57.8 bits (138), Expect = 1e-09
 Identities = 35/191 (18%), Positives = 64/191 (33%), Gaps = 12/191 (6%)

Query: 1   MENFPFHDGSIYDMLDTRHTDTRPDVNHSLQMHSSL--VRRLSQERELEGHQGCVNAISW 58
                 H         +   +    V+ S      +  V+     +   GH+  V  +  
Sbjct: 92  ECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRP 151

Query: 59  NSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAE 118
           N  G+L+ S S+D  + VW  ++++    +   H   V C  + PE+S   +    G   
Sbjct: 152 NQDGTLIASCSNDQTVRVWVVATKECKAEL-REHRHVVECISWAPESSYSSISEATGSET 210

Query: 119 VRLFNLSRFSGRGLDDNAI--------TPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG 170
            +      F   G  D  I                H   V+ +    G   ++ S ++D 
Sbjct: 211 KKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFIL-SCADDK 269

Query: 171 TLRQHDFRQGS 181
           TLR  D++   
Sbjct: 270 TLRVWDYKNKR 280

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.0 bits (115), Expect = 1e-06
 Identities = 23/112 (20%), Positives = 37/112 (33%), Gaps = 16/112 (14%)

Query: 585 ETVDANGSSGSPSSSSQNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIAS 644
           ET  +        S S++  I     +        VGH N    +         G +I S
Sbjct: 209 ETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGV----LFHSGGKFILS 264

Query: 645 GSDDGRWFIWEKQT------------VVNCVQCHPFDCVVATSGIDNTIKIW 684
            +DD    +W+ +              V  +  H     V T  +D T+K+W
Sbjct: 265 CADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.2 bits (100), Expect = 7e-05
 Identities = 8/41 (19%), Positives = 19/41 (46%)

Query: 37  VRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVW 77
            +     + L  H+  V ++ ++     +++GS D  + VW
Sbjct: 276 YKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.6 bits (88), Expect = 0.002
 Identities = 15/88 (17%), Positives = 26/88 (29%), Gaps = 12/88 (13%)

Query: 609 PETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQT---------- 658
               I                 +    G+ G ++ SGS D    +W+  T          
Sbjct: 187 VVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGH 246

Query: 659 --VVNCVQCHPFDCVVATSGIDNTIKIW 684
              V  V  H     + +   D T+++W
Sbjct: 247 DNWVRGVLFHSGGKFILSCADDKTLRVW 274

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 61.5 bits (147), Expect = 8e-11
 Identities = 14/59 (23%), Positives = 24/59 (40%)

Query: 43  ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKF 101
           ++   GH   + A+S ++ G  L S   + HIN W  S+          H+  +   K 
Sbjct: 5   DQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKT 63

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 38.4 bits (87), Expect = 0.002
 Identities = 16/78 (20%), Positives = 34/78 (43%), Gaps = 3/78 (3%)

Query: 49  HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSI-ETGHSANVFCTKFVPETSD 107
           H   V  +SW+     L +GS D  + VW+ +       I +  H+ +   +      ++
Sbjct: 223 HTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWL--NE 280

Query: 108 ELVVSGAGDAEVRLFNLS 125
             +VS   D+ ++ +N+ 
Sbjct: 281 TTIVSAGQDSNIKFWNVP 298

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 61.3 bits (147), Expect = 1e-10
 Identities = 27/138 (19%), Positives = 50/138 (36%), Gaps = 14/138 (10%)

Query: 37  VRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINV-WSYSSRKLLHSIETGHSAN 95
           VR     +   GH+  +NAI +   G+   +GSDD    +    + ++L+          
Sbjct: 213 VREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICG 272

Query: 96  VFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAV 155
           +    F    S  L+++G  D    +++  +             + +   H  RV  L V
Sbjct: 273 ITSVSFSK--SGRLLLAGYDDFNCNVWDALKA----------DRAGVLAGHDNRVSCLGV 320

Query: 156 EVGNPHVVWSASEDGTLR 173
                 V  + S D  L+
Sbjct: 321 TDDGMAVA-TGSWDSFLK 337

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 59.7 bits (143), Expect = 4e-10
 Identities = 18/75 (24%), Positives = 35/75 (46%), Gaps = 3/75 (4%)

Query: 49  HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDE 108
               + ++S++  G LL++G DD + NVW          +  GH   V C     +    
Sbjct: 269 IICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLA-GHDNRVSCLGVTDD--GM 325

Query: 109 LVVSGAGDAEVRLFN 123
            V +G+ D+ ++++N
Sbjct: 326 AVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 52.4 bits (124), Expect = 1e-07
 Identities = 40/273 (14%), Positives = 76/273 (27%), Gaps = 20/273 (7%)

Query: 39  RLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFC 98
           ++   R L GH   + A+ W +   LL+S S D  + +W   +   +H+I    S+ V  
Sbjct: 44  QMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIP-LRSSWVMT 102

Query: 99  TKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVG 158
             +          + +G+        +  S   L           +              
Sbjct: 103 CAY----------APSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFL 152

Query: 159 NPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSL 218
           + + + ++S D T    D   G           +  ++           L        S 
Sbjct: 153 DDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSL----SLAPDTRLFVSGACDASA 208

Query: 219 KSCDISSTRPHLLLVGGSD---AFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEH 275
           K  D+          G      A     +       T           +     +    H
Sbjct: 209 KLWDVREGMCRQTFTGHESDINAICFFPNGNAF--ATGSDDATCRLFDLRADQELMTYSH 266

Query: 276 GRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDV 308
                 +T V+FS +G  +L  Y   +  + D 
Sbjct: 267 DNIICGITSVSFSKSGRLLLAGYDDFNCNVWDA 299

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 51.3 bits (121), Expect = 2e-07
 Identities = 21/98 (21%), Positives = 35/98 (35%), Gaps = 13/98 (13%)

Query: 599 SSQNDRIPYQPETVIDMKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQT 658
           +  +D      +   D +     H N+   I   SF  + G  + +G DD    +W+   
Sbjct: 243 TGSDDATCRLFDLRADQELMTYSHDNIICGITSVSF-SKSGRLLLAGYDDFNCNVWDALK 301

Query: 659 ------------VVNCVQCHPFDCVVATSGIDNTIKIW 684
                        V+C+        VAT   D+ +KIW
Sbjct: 302 ADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 47.0 bits (110), Expect = 5e-06
 Identities = 23/133 (17%), Positives = 46/133 (34%), Gaps = 12/133 (9%)

Query: 49  HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDE 108
           H G V ++S      L +SG+ D    +W         +  TGH +++    F P  +  
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTF-TGHESDINAICFFP--NGN 239

Query: 109 LVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASE 168
              +G+ DA  RLF+L               +  +      +  ++       ++ +  +
Sbjct: 240 AFATGSDDATCRLFDLRADQ--------ELMTYSHDNIICGITSVSFSKSGRLLL-AGYD 290

Query: 169 DGTLRQHDFRQGS 181
           D      D  +  
Sbjct: 291 DFNCNVWDALKAD 303

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 46.7 bits (109), Expect = 6e-06
 Identities = 9/42 (21%), Positives = 19/42 (45%)

Query: 37  VRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWS 78
             +  +   L GH   V+ +     G  + +GS D+ + +W+
Sbjct: 299 ALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.0 bits (141), Expect = 9e-10
 Identities = 17/82 (20%), Positives = 35/82 (42%), Gaps = 5/82 (6%)

Query: 49  HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETS-- 106
           H+  V +++       ++SGS D  +  W   S   L  ++ GH  +V        +S  
Sbjct: 307 HKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQ-GHRNSVISVAVANGSSLG 365

Query: 107 --DELVVSGAGDAEVRLFNLSR 126
               +  +G+GD + R++   +
Sbjct: 366 PEYNVFATGSGDCKARIWKYKK 387

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.3 bits (139), Expect = 1e-09
 Identities = 30/155 (19%), Positives = 56/155 (36%), Gaps = 28/155 (18%)

Query: 41  SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHS------- 93
           S+     GH+  V ++ +   G  ++SGS D  + +W+  +       +T +S       
Sbjct: 245 SENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTY 304

Query: 94  ----ANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRR 149
                 V         +DE ++SG+ D  V  ++               P  + Q H   
Sbjct: 305 IGHKDFVLSVATTQ--NDEYILSGSKDRGVLFWDKKSG----------NPLLMLQGHRNS 352

Query: 150 VKKLAVEVG-----NPHVVWSASEDGTLRQHDFRQ 179
           V  +AV  G       +V  + S D   R   +++
Sbjct: 353 VISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK 387

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.2 bits (118), Expect = 5e-07
 Identities = 37/291 (12%), Positives = 75/291 (25%), Gaps = 41/291 (14%)

Query: 48  GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIE-----------------T 90
            H   V  + +++ G  L +G + T   V+  S   L+  +                   
Sbjct: 60  DHTSVVCCVKFSNDGEYLATGCNKT-TQVYRVSDGSLVARLSDDSAANKDPENLNTSSSP 118

Query: 91  GHSANVFCTKFVPETSDELVVS--------GAGDAEVRLFNLSRFSGRGLDDNAITPSAL 142
                +    F P+       +           + ++ +            D   +   L
Sbjct: 119 SSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKL 178

Query: 143 YQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRC 202
                 R  ++         +  + EDG               AGS  +  R  + D   
Sbjct: 179 VSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVR--VWDSET 236

Query: 203 GAKRSLADPPKQTLSLKSCDISSTRPH----LLLVGGSDAFARLYDRRMLPPLTSCQKRM 258
           G      D   ++ +     + S         ++ G  D   +L++ +     +  +   
Sbjct: 237 GFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPN 296

Query: 259 SPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVN 309
           S    V Y               +  V  + N E +L       V   D  
Sbjct: 297 SGTCEVTYIGHKD---------FVLSVATTQNDEYILSGSKDRGVLFWDKK 338

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.4 bits (103), Expect = 3e-05
 Identities = 19/88 (21%), Positives = 25/88 (28%), Gaps = 18/88 (20%)

Query: 615 MKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQT---------------- 658
                        D   +    Q  +YI SGS D     W+K++                
Sbjct: 296 NSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVIS 355

Query: 659 --VVNCVQCHPFDCVVATSGIDNTIKIW 684
             V N     P   V AT   D   +IW
Sbjct: 356 VAVANGSSLGPEYNVFATGSGDCKARIW 383

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.6 bits (88), Expect = 0.002
 Identities = 11/54 (20%), Positives = 24/54 (44%), Gaps = 8/54 (14%)

Query: 37  VRRLSQERELEGHQGCVNAI------SWNSKGSLLISGSDDTHINVWSYSSRKL 84
            +  +    L+GH+  V ++      S   + ++  +GS D    +W Y  +K+
Sbjct: 337 KKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKY--KKI 388

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.8 bits (140), Expect = 1e-09
 Identities = 40/231 (17%), Positives = 75/231 (32%), Gaps = 21/231 (9%)

Query: 42  QERELEGHQGCV-NAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTK 100
           Q   L GH   V   + +    + +I+G+DD  I V+   ++K L  +  GH   V+  K
Sbjct: 4   QRTTLRGHMTSVITCLQFE--DNYVITGADDKMIRVYDSINKKFLLQLS-GHDGGVWALK 60

Query: 101 FVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNP 160
           +       ++VSG+ D  VR++++ +     + +   +          +         N 
Sbjct: 61  YAH---GGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYK---------NI 108

Query: 161 HVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKS 220
             + + S D TL      + SS P  G  H                 +           S
Sbjct: 109 KYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMA-----S 163

Query: 221 CDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMH 271
               S   ++++ G  D    ++D   +  L              Y     
Sbjct: 164 VRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERK 214

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.7 bits (127), Expect = 3e-08
 Identities = 16/80 (20%), Positives = 32/80 (40%), Gaps = 4/80 (5%)

Query: 49  HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDE 108
           H   ++AI+       ++    +   N+++  S KL+H+     +  ++   F       
Sbjct: 280 HHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKG---KT 336

Query: 109 LVVSGAGDAEVRLFNLSRFS 128
           LV +   D +  L  L  FS
Sbjct: 337 LVAAVEKDGQSFLEILD-FS 355

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.5 bits (103), Expect = 3e-05
 Identities = 45/302 (14%), Positives = 94/302 (31%), Gaps = 6/302 (1%)

Query: 37  VRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANV 96
                   +L GH G V A+ + + G +L+SGS D  + VW        H  E  +S   
Sbjct: 40  SINKKFLLQLSGHDGGVWALKY-AHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVR 98

Query: 97  FCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVE 156
                  +     +V+G+ D  + ++ L + S             ++         + V 
Sbjct: 99  CLDIVEYKNIK-YIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVL 157

Query: 157 VGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTL 216
            G+   V + S  G +        ++      +  +C  IL         ++ D  ++  
Sbjct: 158 RGHMASVRTVSGHGNIVVSGSYD-NTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRC 216

Query: 217 SLKSCD--ISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSE 274
              S D  I         +  +          +           +      +    +  +
Sbjct: 217 ISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRK 276

Query: 275 HGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLN 334
                 +L+ +T     + +L+S S     + ++  +G       + DA +I S      
Sbjct: 277 FSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLR-SGKLVHANILKDADQIWSVNFKGK 335

Query: 335 GL 336
            L
Sbjct: 336 TL 337

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.9 bits (138), Expect = 1e-09
 Identities = 15/76 (19%), Positives = 34/76 (44%), Gaps = 4/76 (5%)

Query: 49  HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDE 108
           H+ CV ++ +   G   +S   D  +N W       +   ++  S++V          D+
Sbjct: 264 HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIF--QSKESSSVLSCDISV--DDK 319

Query: 109 LVVSGAGDAEVRLFNL 124
            +V+G+GD +  ++ +
Sbjct: 320 YIVTGSGDKKATVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.0 bits (107), Expect = 9e-06
 Identities = 9/61 (14%), Positives = 20/61 (32%), Gaps = 5/61 (8%)

Query: 48  GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSS----RKLLHSIETGHSANVFCTKFVP 103
            H   V A++ ++    + +G     + VW  S       +           +   K +P
Sbjct: 49  NHGEVVCAVTISNPTRHVYTGGKGC-VKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLP 107

Query: 104 E 104
           +
Sbjct: 108 D 108

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.8 bits (104), Expect = 2e-05
 Identities = 8/57 (14%), Positives = 12/57 (21%), Gaps = 11/57 (19%)

Query: 639 GDYIASGSDDGRWFIWEKQT-----------VVNCVQCHPFDCVVATSGIDNTIKIW 684
           G +  S   D     W                V        D  + T   D    ++
Sbjct: 277 GKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVY 333

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (86), Expect = 0.004
 Identities = 5/31 (16%), Positives = 11/31 (35%)

Query: 48  GHQGCVNAISWNSKGSLLISGSDDTHINVWS 78
                V +   +     +++GS D    V+ 
Sbjct: 304 KESSSVLSCDISVDDKYIVTGSGDKKATVYE 334

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.4 bits (134), Expect = 4e-09
 Identities = 43/262 (16%), Positives = 79/262 (30%), Gaps = 33/262 (12%)

Query: 39  RLSQERELEGHQGCVN-AISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVF 97
            L   + L+GH   V   + +   G+ ++SGSDD  + VWS  + K L ++  GH+  V+
Sbjct: 5   ELKSPKVLKGHDDHVITCLQFC--GNRIVSGSDDNTLKVWSAVTGKCLRTLV-GHTGGVW 61

Query: 98  CTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEV 157
            ++                           + R L                    +    
Sbjct: 62  SSQMRDNIIIS-----------------GSTDRTLKVWNAETGECIHTLYGHTSTVRCMH 104

Query: 158 GNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRS------LADP 211
            +   V S S D TLR  D   G             R +  D R     +      + DP
Sbjct: 105 LHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDP 164

Query: 212 PKQTLSLK------SCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVN 265
             +T                     ++ G  D   R++D      + +     S    + 
Sbjct: 165 ETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGME 224

Query: 266 YFCPMHLSEHGRSSLHLTHVTF 287
               + +S +  S++ +  +  
Sbjct: 225 LKDNILVSGNADSTVKIWDIKT 246

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.0 bits (115), Expect = 1e-06
 Identities = 32/137 (23%), Positives = 62/137 (45%), Gaps = 17/137 (12%)

Query: 44  RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP 103
             L+GH   V ++ ++  G  ++SGS DT I VW   +   +H++ TGH +     +   
Sbjct: 171 HTLQGHTNRVYSLQFD--GIHVVSGSLDTSIRVWDVETGNCIHTL-TGHQSLTSGMEL-- 225

Query: 104 ETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVV 163
              D ++VSG  D+ V+++++                   Q   +    +     N + V
Sbjct: 226 --KDNILVSGNADSTVKIWDIKTG----------QCLQTLQGPNKHQSAVTCLQFNKNFV 273

Query: 164 WSASEDGTLRQHDFRQG 180
            ++S+DGT++  D + G
Sbjct: 274 ITSSDDGTVKLWDLKTG 290

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (87), Expect = 0.003
 Identities = 13/85 (15%), Positives = 35/85 (41%), Gaps = 12/85 (14%)

Query: 49  HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIET----GHSANVFCTKFVPE 104
           HQ  V  + +N   + +I+ SDD  + +W   + + + ++ T    G    V+  +    
Sbjct: 259 HQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASN- 315

Query: 105 TSDELVVSGAGD----AEVRLFNLS 125
            +  +   G+ +     ++ + +  
Sbjct: 316 -TKLVCAVGSRNGTEETKLLVLDFD 339

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.0 bits (133), Expect = 5e-09
 Identities = 27/247 (10%), Positives = 64/247 (25%), Gaps = 5/247 (2%)

Query: 40  LSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCT 99
           L +          V  + ++     ++SG  D  I +W  ++ +    + TGH+ +V C 
Sbjct: 5   LQRIHCRSETSKGVYCLQYD--DQKIVSGLRDNTIKIWDKNTLECKRIL-TGHTGSVLCL 61

Query: 100 KFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGN 159
           ++                          +     +  +             K  ++ V +
Sbjct: 62  QYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWD 121

Query: 160 PHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLK 219
                  +    L  H                   +  + +   +              +
Sbjct: 122 MASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGH--KR 179

Query: 220 SCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS 279
                  R  L++ G SD   RL+D      L   +       C+ +     +S      
Sbjct: 180 GIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGK 239

Query: 280 LHLTHVT 286
           + +  + 
Sbjct: 240 IKVWDLV 246

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.7 bits (114), Expect = 1e-06
 Identities = 29/173 (16%), Positives = 61/173 (35%), Gaps = 13/173 (7%)

Query: 1   MENFPFHDGSIYDMLDTRHTDTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNS 60
                 H  ++  +            + ++++ +         R L GH+  +  + +  
Sbjct: 131 RRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWN--TSTCEFVRTLNGHKRGIACLQYR- 187

Query: 61  KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR 120
              L++SGS D  I +W       L  +E                    +VSGA D +++
Sbjct: 188 -DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNK-----RIVSGAYDGKIK 241

Query: 121 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLR 173
           +++L            +    L + H+ RV +L     +   + S+S D T+ 
Sbjct: 242 VWDLVAALDPRAPAGTLCLRTLVE-HSGRVFRLQF---DEFQIVSSSHDDTIL 290

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (93), Expect = 4e-04
 Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 2/34 (5%)

Query: 44  RELEGHQGCVNAISWNSKGSLLISGSDDTHINVW 77
           R L  H G V  + ++     ++S S D  I +W
Sbjct: 261 RTLVEHSGRVFRLQFD--EFQIVSSSHDDTILIW 292

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.9 bits (130), Expect = 2e-08
 Identities = 31/308 (10%), Positives = 77/308 (25%), Gaps = 24/308 (7%)

Query: 46  LEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIET--GHSANVFCTKFVP 103
            +  +  ++ I      SLL+  S D  + V+ +  +     +     +   + C  F+ 
Sbjct: 7   EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFID 66

Query: 104 ETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVV 163
            T  ++ V       +++  +   S + L +N         C     K +A        V
Sbjct: 67  NTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEV 126

Query: 164 WSASEDGTLRQHDFRQGSSCPPAGSSHQECRNI--------------LLDLRCGAKRSLA 209
                 G          S+     +                         L      +  
Sbjct: 127 IDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGT 186

Query: 210 DPPKQTLSLKSCD-ISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFC 268
                         +             D    +          +  KR +      + C
Sbjct: 187 IEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFA------FRC 240

Query: 269 PMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMS 328
                +    +  +  + FSP  + +  + S   +   ++     +   +   +   ++ 
Sbjct: 241 HRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQ-TRKKIKNFAKFNEDSVVK 299

Query: 329 FTPTLNGL 336
              + N L
Sbjct: 300 IACSDNIL 307

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.5 bits (111), Expect = 3e-06
 Identities = 22/138 (15%), Positives = 49/138 (35%), Gaps = 12/138 (8%)

Query: 6   FHDGSIYDMLDTRHTDTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLL 65
           +   SI   +     D + D  +S +  +    R     +       VN+I ++ +   L
Sbjct: 209 YACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHR--LNLKDTNLAYPVNSIEFSPRHKFL 266

Query: 66  ISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLS 125
            +   D  I+ W+  +RK + +    +  +V   K     SD ++     D      +  
Sbjct: 267 YTAGSDGIISCWNLQTRKKIKNFAKFNEDSV--VKIAC--SDNILCLATSD------DTF 316

Query: 126 RFSGRGLDDNAITPSALY 143
           + +        +  S++Y
Sbjct: 317 KTNAAIDQTIELNASSIY 334

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 54.1 bits (128), Expect = 2e-08
 Identities = 16/76 (21%), Positives = 34/76 (44%), Gaps = 2/76 (2%)

Query: 49  HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDE 108
           H G V  ++W+  G+ + S S D  I +W+ ++ K+  +I  G          +   + +
Sbjct: 237 HSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW--TKQ 294

Query: 109 LVVSGAGDAEVRLFNL 124
            +VS + +  +   N 
Sbjct: 295 ALVSISANGFINFVNP 310

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 39.9 bits (91), Expect = 8e-04
 Identities = 11/61 (18%), Positives = 15/61 (24%), Gaps = 13/61 (21%)

Query: 639 GDYIASGSDDGRWFIWEKQT-------------VVNCVQCHPFDCVVATSGIDNTIKIWT 685
           G  IAS S D    IW   T                 +        + +   +  I    
Sbjct: 250 GTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVN 309

Query: 686 P 686
           P
Sbjct: 310 P 310

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 54.1 bits (128), Expect = 3e-08
 Identities = 10/72 (13%), Positives = 28/72 (38%), Gaps = 3/72 (4%)

Query: 53  VNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIE-TGHSANVFCTKFVPETSDELVV 111
           ++  +WN   + +    ++  ++++  S  K +   E   H+  V    + P      +V
Sbjct: 10  ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAP--DSNRIV 67

Query: 112 SGAGDAEVRLFN 123
           +   D    ++ 
Sbjct: 68  TCGTDRNAYVWT 79

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 46.8 bits (109), Expect = 7e-06
 Identities = 12/53 (22%), Positives = 24/53 (45%)

Query: 27 NHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSY 79
          NH + ++     +  Q  EL+ H G V  + W    + +++   D +  VW+ 
Sbjct: 28 NHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTL 80

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 42.5 bits (98), Expect = 1e-04
 Identities = 24/182 (13%), Positives = 57/182 (31%), Gaps = 12/182 (6%)

Query: 1   MENFPFHDGSIYDMLDTRHTDTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNS 60
           M       G ++ +  + +      V+H   +  +   +      L      + A+++ +
Sbjct: 194 MFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFIT 253

Query: 61  KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR 120
           + SL+ +G D     +++Y S     S   G       +     T+ E   +    A   
Sbjct: 254 ESSLVAAGHDC-FPVLFTYDSAAGKLSF-GGRLDVPKQSSQRGLTARERFQNLDKKASSE 311

Query: 121 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQG 180
               +      L  N+++  ++      +  +            +   DG +   D R  
Sbjct: 312 GSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFC----------TTGMDGGMSIWDVRSL 361

Query: 181 SS 182
            S
Sbjct: 362 ES 363

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 41.0 bits (94), Expect = 4e-04
 Identities = 12/60 (20%), Positives = 17/60 (28%), Gaps = 14/60 (23%)

Query: 639 GDYIASGSDDGRWFIWEKQT--------------VVNCVQCHPFDCVVATSGIDNTIKIW 684
              IA   ++    I+EK                 V  V   P    + T G D    +W
Sbjct: 19  RTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVW 78

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.0 bits (112), Expect = 2e-06
 Identities = 10/77 (12%), Positives = 20/77 (25%), Gaps = 2/77 (2%)

Query: 49  HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIET-GHSANVFCTKFVPETSD 107
                             +   D  I VW  ++ K +                 V  T +
Sbjct: 250 PVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVA-TGN 308

Query: 108 ELVVSGAGDAEVRLFNL 124
             ++S + D  +  + L
Sbjct: 309 GRIISLSLDGTLNFYEL 325

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.0 bits (99), Expect = 8e-05
 Identities = 11/119 (9%), Positives = 37/119 (31%), Gaps = 5/119 (4%)

Query: 49  HQGCVNAISWNSKGSLLISGS-DDTHINVWSYSSRKL--LHSIETGHSANVFCTKFVPET 105
            +     +S++   + +         +        K+  +       S+ V   KF P  
Sbjct: 16  QRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIK 75

Query: 106 SDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVW 164
             + + SG    +V ++  +    +  +   +   + +Q     +  ++ +     +  
Sbjct: 76  GSQYLCSGDESGKVIVWGWT--FDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCV 132

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.3 bits (110), Expect = 4e-06
 Identities = 16/62 (25%), Positives = 23/62 (37%), Gaps = 10/62 (16%)

Query: 44  RELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP 103
           + + GH   + A++ N     LISGS D  I  WS        S+   HS  +       
Sbjct: 7   KTISGHNKGITALTVNP----LISGSYDGRIMEWS------SSSMHQDHSNLIVSLDNSK 56

Query: 104 ET 105
             
Sbjct: 57  AQ 58

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.1 bits (107), Expect = 7e-06
 Identities = 20/117 (17%), Positives = 36/117 (30%), Gaps = 3/117 (2%)

Query: 7   HDGSIYDMLDTRHTDTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLI 66
              +     D        D+       S    R S+   +        A     +  L+ 
Sbjct: 172 PSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVA 231

Query: 67  SGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFN 123
           +GS DT+I ++S      +      H   V    +        +VS   DA ++ +N
Sbjct: 232 TGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWET---PSTLVSSGADACIKRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.6 bits (98), Expect = 1e-04
 Identities = 17/84 (20%), Positives = 28/84 (33%), Gaps = 14/84 (16%)

Query: 615 MKQRYVGHCNVGTDIKQASFLGQRGDYIASGSDDGRWFIWEKQT-------------VVN 661
            +   +   +     K A+      D +A+GS D   FI+  +               VN
Sbjct: 203 FRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVN 262

Query: 662 CVQCHPFDCVVATSGIDNTIKIWT 685
            +        + +SG D  IK W 
Sbjct: 263 NLLWET-PSTLVSSGADACIKRWN 285

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 42.2 bits (97), Expect = 2e-04
 Identities = 10/89 (11%), Positives = 25/89 (28%), Gaps = 7/89 (7%)

Query: 38  RRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVF 97
                   LE      +        +      +   +  +   +RK+     T    N+ 
Sbjct: 264 GDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKV-----TEVKNNLT 318

Query: 98  CTKFVPETSDELVVSGAGDAEVRLFNLSR 126
             +   +   + V+    D ++  F L +
Sbjct: 319 DLRLSAD--RKTVMVRKDDGKIYTFPLEK 345

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 38.7 bits (88), Expect = 0.002
 Identities = 6/49 (12%), Positives = 20/49 (40%)

Query: 42  QERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIET 90
           + R++   +  +  +  ++    ++   DD  I  +     +   ++ET
Sbjct: 306 KTRKVTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERTVET 354

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 41.7 bits (96), Expect = 2e-04
 Identities = 13/120 (10%), Positives = 32/120 (26%), Gaps = 3/120 (2%)

Query: 7   HDGSIYDMLDTRHTDTRPDVNHSLQMHSSLV-RRLSQERELEGHQGCVNAISWNSKGSLL 65
           + G I+ +  +           +L         R    +++  H+          +    
Sbjct: 214 YTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEW 273

Query: 66  ISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLS 125
              +    + V    + + L   E GH   +       +    L     GD  + + +  
Sbjct: 274 RHKTASRFVVVLDAKTGERLAKFEMGHE--IDSINVSQDEKPLLYALSTGDKTLYIHDAE 331

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (92), Expect = 8e-04
 Identities = 16/95 (16%), Positives = 35/95 (36%), Gaps = 2/95 (2%)

Query: 381 YYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSS 440
                +  E  + + + +     H       A + + +   + + A+R    A  +    
Sbjct: 281 LKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQ--GNIEEAVRLYRKALEVFPEF 338

Query: 441 FRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNS 475
             AH  ++  L+Q  K +EAL     A  + P+ +
Sbjct: 339 AAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFA 373

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.0 bits (87), Expect = 0.002
 Identities = 20/131 (15%), Positives = 46/131 (35%), Gaps = 2/131 (1%)

Query: 419 WKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMA 478
                + A+ DC  A  +D  S +AH ++ +   ++  Y EA+     A  L     +  
Sbjct: 50  KMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRL-- 107

Query: 479 EKVENIKKHIAAAETEKNNKANDGGARSEPRTGRVLSLSDIIYRSEANSDASQDGPRSER 538
              ++I   +  A+ ++ N   +     E      L+      R     +  ++    E 
Sbjct: 108 NFGDDIPSALRIAKKKRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHED 167

Query: 539 EDSDYDEEVEV 549
           +     ++  +
Sbjct: 168 DGHIRAQQACI 178

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 37.9 bits (86), Expect = 0.004
 Identities = 5/83 (6%), Positives = 21/83 (25%), Gaps = 2/83 (2%)

Query: 12  YDMLDTRHTDTRPDVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGS-LLISGSD 70
               +           +   +             +         I+    G  + ++ S 
Sbjct: 206 AVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPD-PAGIAVTPDGKKVYVALSF 264

Query: 71  DTHINVWSYSSRKLLHSIETGHS 93
              ++V   ++  +  ++  G +
Sbjct: 265 CNTVSVIDTATNTITATMAVGKN 287

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	751
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.97
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.97
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.97
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.97
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.97
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.97
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.97
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.96
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.96
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.96
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.95
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.94
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.94
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.94
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.94
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.93
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.9
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.89
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.88
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.87
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.83
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.83
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.82
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.82
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.78
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.77
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.73
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.71
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.7
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.67
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.64
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.55
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.55
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.5
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.46
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.45
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.44
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.23
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.03
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	98.99
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	98.98
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	98.92
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.77
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.7
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	98.48
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.42
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.35
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.31
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.29
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.23
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.19
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.18
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.17
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.14
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.11
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.1
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	98.07
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	97.96
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	97.94
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	97.93
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	97.86
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	97.75
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	97.61
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	97.61
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	97.6
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	97.43
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	97.16
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.11
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	97.02
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	96.98
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	96.93
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	96.58
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	96.15
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	95.68
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	95.47
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	95.22
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	95.18
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	94.99
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	94.8
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	94.28
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	94.23
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	94.17
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	93.86
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	93.37
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	93.27
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	92.98
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	92.75
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	91.31
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	91.13
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	91.08
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	90.88
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	90.85
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	90.43
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	90.09
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	89.68
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	89.67
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	89.45
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	88.75
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	84.82
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	84.23
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	83.34
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	82.61
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	80.78

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=5.9e-36  Score=310.38  Aligned_cols=173  Identities=20%  Similarity=0.305  Sum_probs=151.0

Q ss_pred             cccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCc
Q 004468           39 RLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAE  118 (751)
Q Consensus        39 ~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~  118 (751)
                      +....++|+||++.|++|+|+|++++||||+.||+|+|||+.+++.+.++ .+|...|.+++|+|+  +.++++++.++.
T Consensus         6 ~~~~~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~-~~h~~~V~~~~~~~~--~~~~~~~~~~~~   82 (317)
T d1vyhc1           6 RPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTL-KGHTDSVQDISFDHS--GKLLASCSADMT   82 (317)
T ss_dssp             CSSCSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEE-CCCSSCEEEEEECTT--SSEEEEEETTSC
T ss_pred             CCCccEEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEE-eCCCCcEEEEeeecc--cccccccccccc
Confidence            44456789999999999999999999999999999999999999999999 899999999999999  899999999999


Q ss_pred             EEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEE
Q 004468          119 VRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILL  198 (751)
Q Consensus       119 V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~  198 (751)
                      +.+|+....          .....+.+|...+.++.|+| ++..+++++.|+.+++||+++++..           .   
T Consensus        83 ~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~-----------~---  137 (317)
T d1vyhc1          83 IKLWDFQGF----------ECIRTMHGHDHNVSSVSIMP-NGDHIVSASRDKTIKMWEVQTGYCV-----------K---  137 (317)
T ss_dssp             CCEEETTSS----------CEEECCCCCSSCEEEEEECS-SSSEEEEEETTSEEEEEETTTCCEE-----------E---
T ss_pred             ccccccccc----------ccccccccccccceeeeccC-CCceEEeeccCcceeEeecccceee-----------e---
Confidence            999998864          44667788999999999999 6688999999999999999887521           1   


Q ss_pred             ecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCc
Q 004468          199 DLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPL  251 (751)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~  251 (751)
                                 ....+...+.+++|+| ++.+|++++.|+.|++|+.++.+..
T Consensus       138 -----------~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~v~~~~~~~~~~~  178 (317)
T d1vyhc1         138 -----------TFTGHREWVRMVRPNQ-DGTLIASCSNDQTVRVWVVATKECK  178 (317)
T ss_dssp             -----------EEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEE
T ss_pred             -----------EEccCCCcceeeeccc-CCCEEEEEeCCCeEEEEeeccceee
Confidence                       1112556789999999 4789999999999999999887644

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-35  Score=315.17  Aligned_cols=214  Identities=19%  Similarity=0.264  Sum_probs=174.6

Q ss_pred             hhccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEE---EE-ecccCCcceEEEEEecCCCCcEEE
Q 004468           36 LVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLL---HS-IETGHSANVFCTKFVPETSDELVV  111 (751)
Q Consensus        36 ~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~---~~-l~~~h~~~V~~v~fsp~s~~~~l~  111 (751)
                      ..++.+.+++| +|...|+||+|+|+|++||||+ ||.|+|||+.++...   .. ...+|.+.|.+++|+|+  +++|+
T Consensus        38 ~p~~~~~~~~~-~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~d--g~~l~  113 (337)
T d1gxra_          38 IPRHARQINTL-NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPD--GCTLI  113 (337)
T ss_dssp             CCSEEEEEEEE-CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTT--SSEEE
T ss_pred             CCCCceEEEEC-CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCC--CCEEE
Confidence            34566777888 7999999999999999999997 899999998754321   11 22589999999999999  89999


Q ss_pred             EEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCC
Q 004468          112 SGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQ  191 (751)
Q Consensus       112 sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~  191 (751)
                      +|+.|++|++||+.....        +....+..|...|..++|+| ++.++++++.|+.|++||+++++..        
T Consensus       114 s~~~dg~i~iwd~~~~~~--------~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~i~~~~~~~~~~~--------  176 (337)
T d1gxra_         114 VGGEASTLSIWDLAAPTP--------RIKAELTSSAPACYALAISP-DSKVCFSCCSDGNIAVWDLHNQTLV--------  176 (337)
T ss_dssp             EEESSSEEEEEECCCC----------EEEEEEECSSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEE--------
T ss_pred             Eeeccccccccccccccc--------cccccccccccccccccccc-ccccccccccccccccccccccccc--------
Confidence            999999999999985432        33567788999999999999 6789999999999999999876421        


Q ss_pred             ccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccc
Q 004468          192 ECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMH  271 (751)
Q Consensus       192 ~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (751)
                                       .....+...|++++|+++ +..+++|+.|+.|++||+++.+.+..+                 
T Consensus       177 -----------------~~~~~~~~~v~~l~~s~~-~~~~~~~~~d~~v~i~d~~~~~~~~~~-----------------  221 (337)
T d1gxra_         177 -----------------RQFQGHTDGASCIDISND-GTKLWTGGLDNTVRSWDLREGRQLQQH-----------------  221 (337)
T ss_dssp             -----------------EEECCCSSCEEEEEECTT-SSEEEEEETTSEEEEEETTTTEEEEEE-----------------
T ss_pred             -----------------cccccccccccccccccc-ccccccccccccccccccccceeeccc-----------------
Confidence                             111235678999999994 789999999999999999876543221                 


Q ss_pred             cccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004468          272 LSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (751)
Q Consensus       272 ~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~  310 (751)
                          .+.. .|++++|+|++++|++++.|+.|++||+.+
T Consensus       222 ----~~~~-~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~  255 (337)
T d1gxra_         222 ----DFTS-QIFSLGYCPTGEWLAVGMESSNVEVLHVNK  255 (337)
T ss_dssp             ----ECSS-CEEEEEECTTSSEEEEEETTSCEEEEETTS
T ss_pred             ----cccc-ceEEEEEcccccccceeccccccccccccc
Confidence                1222 599999999999999999999999999876

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2e-35  Score=318.57  Aligned_cols=211  Identities=19%  Similarity=0.300  Sum_probs=168.6

Q ss_pred             ccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEec-----------------ccCCcceEEEEEecCCCCcE
Q 004468           47 EGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIE-----------------TGHSANVFCTKFVPETSDEL  109 (751)
Q Consensus        47 ~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~-----------------~~h~~~V~~v~fsp~s~~~~  109 (751)
                      .+|++.|+||+|+|+|++||+|+ |++|+|||+.+++.+..+.                 .+|...|.+++|+|+  +++
T Consensus        59 ~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~--~~~  135 (388)
T d1erja_          59 LDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPD--GKF  135 (388)
T ss_dssp             EECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTT--SSE
T ss_pred             CCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCC--CCc
Confidence            36999999999999999999997 8999999999988776652                 256778999999999  899


Q ss_pred             EEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCC
Q 004468          110 VVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSS  189 (751)
Q Consensus       110 l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~  189 (751)
                      |++|+.|++|++||....          +.+..+.+|...|.+++|++ ++..+++++.++.|++||+++....      
T Consensus       136 l~s~~~dg~v~i~~~~~~----------~~~~~~~~h~~~v~~~~~~~-~~~~~~~~~~~~~i~~~d~~~~~~~------  198 (388)
T d1erja_         136 LATGAEDRLIRIWDIENR----------KIVMILQGHEQDIYSLDYFP-SGDKLVSGSGDRTVRIWDLRTGQCS------  198 (388)
T ss_dssp             EEEEETTSCEEEEETTTT----------EEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEE------
T ss_pred             ceeccccccccccccccc----------cccccccccccccccccccc-ccccccccccceeeeeeeccccccc------
Confidence            999999999999999864          55778889999999999999 6688899999999999999875421      


Q ss_pred             CCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccc
Q 004468          190 HQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCP  269 (751)
Q Consensus       190 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~  269 (751)
                            ...              .+.....++.+++.++.+|++|+.|+.|++||.++......+..             
T Consensus       199 ------~~~--------------~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~-------------  245 (388)
T d1erja_         199 ------LTL--------------SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDS-------------  245 (388)
T ss_dssp             ------EEE--------------ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC--------------
T ss_pred             ------ccc--------------ccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeecc-------------
Confidence                  000              02234566778877789999999999999999998764433211             


Q ss_pred             cccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 004468          270 MHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (751)
Q Consensus       270 ~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~  311 (751)
                      ......+|.. .|++++|+|++++|++++.|+.|++||+.+.
T Consensus       246 ~~~~~~~h~~-~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~  286 (388)
T d1erja_         246 ENESGTGHKD-SVYSVVFTRDGQSVVSGSLDRSVKLWNLQNA  286 (388)
T ss_dssp             -----CCCSS-CEEEEEECTTSSEEEEEETTSEEEEEEC---
T ss_pred             ccccccCCCC-CEEEEEECCCCCEEEEEECCCcEEEEeccCC
Confidence            1111123444 6999999999999999999999999998873

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=6.5e-34  Score=299.34  Aligned_cols=213  Identities=23%  Similarity=0.338  Sum_probs=174.6

Q ss_pred             ccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcE
Q 004468           40 LSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEV  119 (751)
Q Consensus        40 ~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V  119 (751)
                      ++..++|+||++.|++|+|+|++++||||+.||+|+|||+.+++.+..+ .+|...|.+++|+|+  +.+|++|+.|+.|
T Consensus        45 ~~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~-~~~~~~v~~v~~~~~--~~~l~~~~~d~~i  121 (340)
T d1tbga_          45 MRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAI-PLRSSWVMTCAYAPS--GNYVACGGLDNIC  121 (340)
T ss_dssp             CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEE-ECSCSCEEEEEECTT--SSEEEEEETTCCE
T ss_pred             eeeeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEE-ecccccEEeeEeecc--ceeeeeeccccee
Confidence            4677899999999999999999999999999999999999999999998 789999999999999  8999999999999


Q ss_pred             EEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEe
Q 004468          120 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD  199 (751)
Q Consensus       120 ~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~  199 (751)
                      ++|+.......      ......+.+|...+.......  ...+.....|.....++.......              . 
T Consensus       122 ~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~--------------~-  178 (340)
T d1tbga_         122 SIYNLKTREGN------VRVSRELAGHTGYLSCCRFLD--DNQIVTSSGDTTCALWDIETGQQT--------------T-  178 (340)
T ss_dssp             EEEESSSSCSC------CCEEEEECCCSSCEEEEEEEE--TTEEEEEETTTEEEEEETTTTEEE--------------E-
T ss_pred             ecccccccccc------cccceeccccccccccccccc--cccccccccccccccccccccccc--------------c-
Confidence            99998764322      144566778888877776665  357778899999999987764311              0 


Q ss_pred             cccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccc
Q 004468          200 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS  279 (751)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  279 (751)
                                ........+....+.+ ...++++|+.|+.|++||+++.+.+..+                    .+|..
T Consensus       179 ----------~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~v~i~d~~~~~~~~~~--------------------~~h~~  227 (340)
T d1tbga_         179 ----------TFTGHTGDVMSLSLAP-DTRLFVSGACDASAKLWDVREGMCRQTF--------------------TGHES  227 (340)
T ss_dssp             ----------EEECCSSCEEEEEECT-TSSEEEEEETTTEEEEEETTTTEEEEEE--------------------CCCSS
T ss_pred             ----------cccccceeEeeecccc-ccceeEEeecCceEEEEECCCCcEEEEE--------------------eCCCC
Confidence                      0011345677888888 4789999999999999999876543322                    23433


Q ss_pred             cceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004468          280 LHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (751)
Q Consensus       280 ~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~  310 (751)
                       .|++++|+|++++|++++.|+.|++||+..
T Consensus       228 -~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~  257 (340)
T d1tbga_         228 -DINAICFFPNGNAFATGSDDATCRLFDLRA  257 (340)
T ss_dssp             -CEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred             -CeEEEEECCCCCEEEEEeCCCeEEEEeecc
Confidence             599999999999999999999999999877

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=2e-33  Score=295.51  Aligned_cols=205  Identities=15%  Similarity=0.192  Sum_probs=168.4

Q ss_pred             cCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCC
Q 004468           48 GHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRF  127 (751)
Q Consensus        48 gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~  127 (751)
                      .+.+.+.+++++|+|+.||.++ ++.|.+||+.++.....+ .+|...|++++|+|+  |++|++|+.|++|+|||+...
T Consensus        15 ~~r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~~~~-~~H~~~v~~~~~sp~--g~~latg~~dg~i~iwd~~~~   90 (311)
T d1nr0a1          15 TARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIY-TEHSHQTTVAKTSPS--GYYCASGDVHGNVRIWDTTQT   90 (311)
T ss_dssp             CCTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEE-CCCSSCEEEEEECTT--SSEEEEEETTSEEEEEESSST
T ss_pred             CCCCCeEEEEEcCCCCEEEEEe-CCEEEEEECCCCceeEEE-cCCCCCEEEEEEeCC--CCeEeccccCceEeeeeeecc
Confidence            3556777899999999999986 557999999998888888 899999999999999  899999999999999999864


Q ss_pred             CCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeC--CCcEEEEecCCCCCCCCCCCCCCccceEEEecccCce
Q 004468          128 SGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASE--DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAK  205 (751)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~--Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~  205 (751)
                      ..        .....+.+|...|.+++|+| ++.+|++++.  ++.+++|++.+++..                      
T Consensus        91 ~~--------~~~~~~~~~~~~v~~v~~s~-d~~~l~~~~~~~~~~~~v~~~~~~~~~----------------------  139 (311)
T d1nr0a1          91 TH--------ILKTTIPVFSGPVKDISWDS-ESKRIAAVGEGRERFGHVFLFDTGTSN----------------------  139 (311)
T ss_dssp             TC--------CEEEEEECSSSCEEEEEECT-TSCEEEEEECCSSCSEEEEETTTCCBC----------------------
T ss_pred             cc--------ccccccccccCccccccccc-ccccccccccccccccccccccccccc----------------------
Confidence            32        22456788999999999999 5678888875  466999999877532                      


Q ss_pred             ecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEE
Q 004468          206 RSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHV  285 (751)
Q Consensus       206 ~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v  285 (751)
                         .....|...|++++|+|++...|++|+.|+.|++||+++.+....+                    .+|.. .|+++
T Consensus       140 ---~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~--------------------~~~~~-~i~~v  195 (311)
T d1nr0a1         140 ---GNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTF--------------------GEHTK-FVHSV  195 (311)
T ss_dssp             ---BCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEE--------------------CCCSS-CEEEE
T ss_pred             ---ccccccccccccccccccceeeeccccccccccccccccccccccc--------------------ccccc-ccccc
Confidence               1223467789999999976667999999999999999875432211                    22333 59999


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEECCCC
Q 004468          286 TFSPNGEEVLLSYSGEHVYLMDVNHA  311 (751)
Q Consensus       286 ~fspdg~~Ll~~s~d~~I~lwdl~~~  311 (751)
                      .|+|++++|++++.|+.|++||+.++
T Consensus       196 ~~~p~~~~l~~~~~d~~v~~~d~~~~  221 (311)
T d1nr0a1         196 RYNPDGSLFASTGGDGTIVLYNGVDG  221 (311)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETTTC
T ss_pred             ccCccccccccccccccccccccccc
Confidence            99999999999999999999998873

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1e-33  Score=294.31  Aligned_cols=208  Identities=16%  Similarity=0.187  Sum_probs=164.0

Q ss_pred             cccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEE
Q 004468           41 SQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR  120 (751)
Q Consensus        41 ~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~  120 (751)
                      ++.++|.||++.|++|+|+|+|++||||+.||+|+|||+.+++.+..+..+|...|.+++|+|+  +. +++++.|+.|+
T Consensus         3 ~~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~--g~-~~~~~~d~~v~   79 (299)
T d1nr0a2           3 SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSK--GD-LFTVSWDDHLK   79 (299)
T ss_dssp             EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTT--SC-EEEEETTTEEE
T ss_pred             ccceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeecc--ce-eecccceeeEE
Confidence            4678999999999999999999999999999999999999999998886789999999999998  55 56677899999


Q ss_pred             EEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEec
Q 004468          121 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDL  200 (751)
Q Consensus       121 vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~  200 (751)
                      +|++......       ........|...+.+++|+| ++.++++ +.++.+++|+......             ..   
T Consensus        80 ~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~s~-~g~~~~~-~~~~~i~~~~~~~~~~-------------~~---  134 (299)
T d1nr0a2          80 VVPAGGSGVD-------SSKAVANKLSSQPLGLAVSA-DGDIAVA-ACYKHIAIYSHGKLTE-------------VP---  134 (299)
T ss_dssp             EECSSSSSSC-------TTSCCEEECSSCEEEEEECT-TSSCEEE-EESSEEEEEETTEEEE-------------EE---
T ss_pred             EeccCCcccc-------cccccccccccccccccccc-ccccccc-cccccccccccccccc-------------cc---
Confidence            9998753211       12334456788899999999 5566644 4557899998543210             00   


Q ss_pred             ccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCcccc
Q 004468          201 RCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSL  280 (751)
Q Consensus       201 ~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  280 (751)
                                   ....+.+++|+| ++.+|++|+.|+.|++||+++.+...             ...      ..|.. 
T Consensus       135 -------------~~~~~~~~~~s~-~~~~l~~g~~dg~i~~~d~~~~~~~~-------------~~~------~~~~~-  180 (299)
T d1nr0a2         135 -------------ISYNSSCVALSN-DKQFVAVGGQDSKVHVYKLSGASVSE-------------VKT------IVHPA-  180 (299)
T ss_dssp             -------------CSSCEEEEEECT-TSCEEEEEETTSEEEEEEEETTEEEE-------------EEE------EECSS-
T ss_pred             -------------cccccccccccc-cccccccccccccccccccccccccc-------------ccc------ccccc-
Confidence                         123577899999 47999999999999999987643211             000      12333 


Q ss_pred             ceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004468          281 HLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (751)
Q Consensus       281 ~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~  310 (751)
                      .|++++|+|++++|++++.|+.|++||+.+
T Consensus       181 ~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~  210 (299)
T d1nr0a2         181 EITSVAFSNNGAFLVATDQSRKVIPYSVAN  210 (299)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEEGGG
T ss_pred             cccccccccccccccccccccccccccccc
Confidence            599999999999999999999999999876

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.8e-33  Score=301.61  Aligned_cols=226  Identities=15%  Similarity=0.175  Sum_probs=172.4

Q ss_pred             CCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCe--EEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCC
Q 004468           49 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK--LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSR  126 (751)
Q Consensus        49 H~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~--~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~  126 (751)
                      +.++|+|++|+|+|++||+|+.|+.|+|||..+++  .+..+ .+|.+.|.+++|+|+  +++|+||+.|++|+|||+..
T Consensus         6 ~~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l-~gH~~~V~~l~fsp~--~~~l~s~s~D~~i~vWd~~~   82 (371)
T d1k8kc_           6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHEL-KEHNGQVTGVDWAPD--SNRIVTCGTDRNAYVWTLKG   82 (371)
T ss_dssp             CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEE-ECCSSCEEEEEEETT--TTEEEEEETTSCEEEEEEET
T ss_pred             CCCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEe-cCCCCCEEEEEECCC--CCEEEEEECCCeEEEEeecc
Confidence            35789999999999999999999999999998765  45566 799999999999999  79999999999999999985


Q ss_pred             CCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCcee
Q 004468          127 FSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKR  206 (751)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~  206 (751)
                      ...        .+...+.+|...|++++|+| +++.|++++.|++|++|++......           ...         
T Consensus        83 ~~~--------~~~~~~~~~~~~v~~i~~~p-~~~~l~~~s~d~~i~i~~~~~~~~~-----------~~~---------  133 (371)
T d1k8kc_          83 RTW--------KPTLVILRINRAARCVRWAP-NEKKFAVGSGSRVISICYFEQENDW-----------WVC---------  133 (371)
T ss_dssp             TEE--------EEEEECCCCSSCEEEEEECT-TSSEEEEEETTSSEEEEEEETTTTE-----------EEE---------
T ss_pred             ccc--------cccccccccccccccccccc-ccccceeecccCcceeeeeeccccc-----------ccc---------
Confidence            432        33556778999999999999 6789999999999999998875421           011         


Q ss_pred             cccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEE
Q 004468          207 SLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVT  286 (751)
Q Consensus       207 ~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~  286 (751)
                       ......+...|.+++|+| ++.+|++|+.|+.|++||...............  .....+........+|.. .|++++
T Consensus       134 -~~~~~~~~~~v~~v~~~p-~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~v~~~~  208 (371)
T d1k8kc_         134 -KHIKKPIRSTVLSLDWHP-NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPW--GSKMPFGELMFESSSSCG-WVHGVC  208 (371)
T ss_dssp             -EEECTTCCSCEEEEEECT-TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTT--BSCCCTTCEEEECCCCSS-CEEEEE
T ss_pred             -cccccccccccccccccc-cccceeccccCcEEEEEeeccCccccccccccc--cccccceeeeeeccCccC-cEEEEE
Confidence             111233567899999999 478999999999999999876542221110000  000000000111123443 699999


Q ss_pred             EcCCCCEEEEEeCCCcEEEEECCCC
Q 004468          287 FSPNGEEVLLSYSGEHVYLMDVNHA  311 (751)
Q Consensus       287 fspdg~~Ll~~s~d~~I~lwdl~~~  311 (751)
                      |+|+|++|++++.|+.|++||+.++
T Consensus       209 ~s~~g~~l~s~~~d~~i~iwd~~~~  233 (371)
T d1k8kc_         209 FSANGSRVAWVSHDSTVCLADADKK  233 (371)
T ss_dssp             ECSSSSEEEEEETTTEEEEEEGGGT
T ss_pred             eecccccccccccCCcceEEeeecc
Confidence            9999999999999999999998774

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.3e-31  Score=281.49  Aligned_cols=222  Identities=15%  Similarity=0.154  Sum_probs=184.1

Q ss_pred             hccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEE--EEecccCCcceEEEEEecCCCCcEEEEEE
Q 004468           37 VRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLL--HSIETGHSANVFCTKFVPETSDELVVSGA  114 (751)
Q Consensus        37 i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~--~~l~~~h~~~V~~v~fsp~s~~~~l~sgs  114 (751)
                      +......+.+.+|.+.|++++|+|+|++||+|+.||+|+|||+.++...  ..+ .+|.+.|.+++|+|+  +++|++++
T Consensus        45 ~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~-~~~~~~v~~v~~s~d--~~~l~~~~  121 (311)
T d1nr0a1          45 VGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTI-PVFSGPVKDISWDSE--SKRIAAVG  121 (311)
T ss_dssp             TTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEE-ECSSSCEEEEEECTT--SCEEEEEE
T ss_pred             CCCCceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeecccccccccc-ccccCcccccccccc--cccccccc
Confidence            4567788899999999999999999999999999999999999877543  345 789999999999999  78999887


Q ss_pred             C--CCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCc
Q 004468          115 G--DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQE  192 (751)
Q Consensus       115 ~--Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~  192 (751)
                      .  +..++||++...          ++...+.+|...|++++|+|++..+|++|+.||+|++||+++.+..         
T Consensus       122 ~~~~~~~~v~~~~~~----------~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~---------  182 (311)
T d1nr0a1         122 EGRERFGHVFLFDTG----------TSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFK---------  182 (311)
T ss_dssp             CCSSCSEEEEETTTC----------CBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEE---------
T ss_pred             ccccccccccccccc----------cccccccccccccccccccccceeeecccccccccccccccccccc---------
Confidence            5  466999999864          4567788999999999999977667999999999999999876421         


Q ss_pred             cceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCcccccccccc
Q 004468          193 CRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHL  272 (751)
Q Consensus       193 ~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (751)
                                      .....|...|+++.|+| ++++|++++.|+.|++||.++...+..++             ....
T Consensus       183 ----------------~~~~~~~~~i~~v~~~p-~~~~l~~~~~d~~v~~~d~~~~~~~~~~~-------------~~~~  232 (311)
T d1nr0a1         183 ----------------STFGEHTKFVHSVRYNP-DGSLFASTGGDGTIVLYNGVDGTKTGVFE-------------DDSL  232 (311)
T ss_dssp             ----------------EEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEEECB-------------CTTS
T ss_pred             ----------------cccccccccccccccCc-ccccccccccccccccccccccccccccc-------------cccc
Confidence                            11123567899999999 57999999999999999999876544332             1122


Q ss_pred             ccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 004468          273 SEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (751)
Q Consensus       273 ~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~  311 (751)
                      ...+|.. .|++++|+|+|++|++|+.|+.|+|||++++
T Consensus       233 ~~~~h~~-~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~  270 (311)
T d1nr0a1         233 KNVAHSG-SVFGLTWSPDGTKIASASADKTIKIWNVATL  270 (311)
T ss_dssp             SSCSSSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTT
T ss_pred             ccccccc-cccccccCCCCCEEEEEeCCCeEEEEECCCC
Confidence            2234555 6999999999999999999999999998874

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.1e-31  Score=280.78  Aligned_cols=244  Identities=17%  Similarity=0.292  Sum_probs=163.9

Q ss_pred             cEEeccCCCcE-EEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEE
Q 004468           43 ERELEGHQGCV-NAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRL  121 (751)
Q Consensus        43 ~~~L~gH~~~V-~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~v  121 (751)
                      ..+|+||.+.| +|++|  +|++||||+.||+|+|||+.+++++.++ .+|.+.|.+++|+|+   .+|++|+.|++|++
T Consensus         5 ~~tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~~l-~~H~~~V~~l~~s~~---~~l~s~s~D~~i~i   78 (355)
T d1nexb2           5 RTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQL-SGHDGGVWALKYAHG---GILVSGSTDRTVRV   78 (355)
T ss_dssp             EEEEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEEEE-ECCSSCEEEEEEETT---TEEEEEETTCCEEE
T ss_pred             cEEECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCCcEEEEE-ECCCCCEEEEEEcCC---CEEEEEeccccccc
Confidence            45799999886 66665  5889999999999999999999999999 899999999999986   58999999999999


Q ss_pred             EECCCCCCCCCCCCCCCCceeec--ccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEe
Q 004468          122 FNLSRFSGRGLDDNAITPSALYQ--CHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD  199 (751)
Q Consensus       122 wd~~~~~~~~~~~~~~~~~~~~~--~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~  199 (751)
                      |++....          ......  .+...+..+.+.+ ++..+++++.|++|++||+++............  ......
T Consensus        79 w~~~~~~----------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~--~~~~~~  145 (355)
T d1nexb2          79 WDIKKGC----------CTHVFEGHNSTVRCLDIVEYK-NIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHD--YPLVFH  145 (355)
T ss_dssp             EETTTTE----------EEEEECCCSSCEEEEEEEEET-TEEEEEEEETTSEEEEEECCC-----------C--CCEEES
T ss_pred             ccccccc----------ccccccccccccccccccccc-ccceeeeecCCCcEEEEEccCCceeccccccce--ecccee
Confidence            9998642          222222  2333445556666 668899999999999999988764322111110  001110


Q ss_pred             cccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccc
Q 004468          200 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS  279 (751)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  279 (751)
                      ........+.....+...+..  +.+ ++.+++++..|+.|++||+++.+.+...                    .++..
T Consensus       146 ~~~~~~~~~~~~~~~~~~v~~--~~~-~~~~~~~~~~d~~i~~~d~~~~~~~~~~--------------------~~~~~  202 (355)
T d1nexb2         146 TPEENPYFVGVLRGHMASVRT--VSG-HGNIVVSGSYDNTLIVWDVAQMKCLYIL--------------------SGHTD  202 (355)
T ss_dssp             CTTTCTTEEEEEECCSSCEEE--EEE-ETTEEEEEETTSCEEEEETTTTEEEEEE--------------------CCCSS
T ss_pred             ccccccceeeeeeeccccccc--ccc-ccceeeeecccceeeeeecccccceeee--------------------ecccc
Confidence            000000001111112333333  333 3679999999999999999876533221                    11222


Q ss_pred             cceEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcceeeeecCCCceeEEe
Q 004468          280 LHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSF  329 (751)
Q Consensus       280 ~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~~~~~~~~~~~~~~  329 (751)
                       .+.++.|+|++.++++++.|+.|++||+.++........+...+..+++
T Consensus       203 -~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~  251 (355)
T d1nexb2         203 -RIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRL  251 (355)
T ss_dssp             -CEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEEE
T ss_pred             -ccccccccccceeeecccccceEEeeecccccccccccccccccccccc
Confidence             4889999999999999999999999999986544433333333333333

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.1e-29  Score=265.90  Aligned_cols=207  Identities=22%  Similarity=0.338  Sum_probs=154.3

Q ss_pred             ccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCC
Q 004468           38 RRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA  117 (751)
Q Consensus        38 ~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg  117 (751)
                      ..+++.++|+||++.|.+ +++++|++|||||.||+|+|||+.+++++.++ .+|.+.|.+++|+|+    +|++|+.|+
T Consensus         4 ~~~~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~-~~h~~~V~~v~~~~~----~l~s~s~D~   77 (342)
T d2ovrb2           4 GELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTL-VGHTGGVWSSQMRDN----IIISGSTDR   77 (342)
T ss_dssp             SCCCCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEEC-CCCSSCEEEEEEETT----EEEEEETTS
T ss_pred             CCCCcCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEEE-eCCCCCEEEEEeCCC----ccccceecc
Confidence            456788999999999865 36667999999999999999999999999998 899999999999864    899999999


Q ss_pred             cEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEE
Q 004468          118 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNIL  197 (751)
Q Consensus       118 ~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l  197 (751)
                      ++++|+....          ........+...+......   +..+..+..|+++.+|+.++++..           ..+
T Consensus        78 ~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~---~~~~~~~~~d~~i~~~~~~~~~~~-----------~~~  133 (342)
T d2ovrb2          78 TLKVWNAETG----------ECIHTLYGHTSTVRCMHLH---EKRVVSGSRDATLRVWDIETGQCL-----------HVL  133 (342)
T ss_dssp             CEEEEETTTT----------EEEEEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEESSSCCEE-----------EEE
T ss_pred             cccccccccc----------cceecccccceeEeeeecc---cccccccccceeEEEeecccccce-----------eee
Confidence            9999999853          2234444455556555543   367789999999999999887521           011


Q ss_pred             EecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCc
Q 004468          198 LDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGR  277 (751)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  277 (751)
                      ..              ... . ...+.+ ....+++++.|+.|++||.+..+.+..+                    .+|
T Consensus       134 ~~--------------~~~-~-~~~~~~-~~~~~~~~~~d~~i~~~d~~~~~~~~~~--------------------~~~  176 (342)
T d2ovrb2         134 MG--------------HVA-A-VRCVQY-DGRRVVSGAYDFMVKVWDPETETCLHTL--------------------QGH  176 (342)
T ss_dssp             EC--------------CSS-C-EEEEEE-CSSCEEEEETTSCEEEEEGGGTEEEEEE--------------------CCC
T ss_pred             ec--------------ccc-c-ceeecc-ccceeeeecCCCeEEEeecccceeeEEE--------------------cCc
Confidence            00              011 1 112233 3568999999999999999865432221                    223


Q ss_pred             cccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcc
Q 004468          278 SSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGR  314 (751)
Q Consensus       278 ~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~  314 (751)
                      .   .....+++++.+|++++.|+.|++||+..+...
T Consensus       177 ~---~~~~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~  210 (342)
T d2ovrb2         177 T---NRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCI  210 (342)
T ss_dssp             S---SCEEEEEECSSEEEEEETTSCEEEEETTTCCEE
T ss_pred             c---cccccccCCCCEEEEEeCCCeEEEeecccceee
Confidence            2   234456668999999999999999999986533

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.97  E-value=1e-29  Score=273.39  Aligned_cols=246  Identities=13%  Similarity=0.128  Sum_probs=186.8

Q ss_pred             cccccccchhhhccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEe-cccCCcceEEEEEecC
Q 004468           26 VNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSI-ETGHSANVFCTKFVPE  104 (751)
Q Consensus        26 ~~~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l-~~~h~~~V~~v~fsp~  104 (751)
                      .+..+++|+....++.++++|++|.+.|++|+|+|++++||||+.|++|+|||+.++.....+ ..+|...|.+++|+|+
T Consensus        27 ~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~  106 (371)
T d1k8kc_          27 NNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPN  106 (371)
T ss_dssp             SSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTT
T ss_pred             CCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecccccccccccccccccccccccccc
Confidence            356788998777788889999999999999999999999999999999999999876544332 2689999999999999


Q ss_pred             CCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCC
Q 004468          105 TSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCP  184 (751)
Q Consensus       105 s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~  184 (751)
                        ++.|++|+.|++|++|++.......      ........|...|.+++|+| ++.+|++|+.||+|++||+.......
T Consensus       107 --~~~l~~~s~d~~i~i~~~~~~~~~~------~~~~~~~~~~~~v~~v~~~p-~~~~l~s~s~D~~v~v~~~~~~~~~~  177 (371)
T d1k8kc_         107 --EKKFAVGSGSRVISICYFEQENDWW------VCKHIKKPIRSTVLSLDWHP-NSVLLAAGSCDFKCRIFSAYIKEVEE  177 (371)
T ss_dssp             --SSEEEEEETTSSEEEEEEETTTTEE------EEEEECTTCCSCEEEEEECT-TSSEEEEEETTSCEEEEECCCTTTSC
T ss_pred             --cccceeecccCcceeeeeecccccc------cccccccccccccccccccc-cccceeccccCcEEEEEeeccCcccc
Confidence              8999999999999999988542211      12344567999999999999 67899999999999999998765321


Q ss_pred             CCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCcc
Q 004468          185 PAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCV  264 (751)
Q Consensus       185 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~  264 (751)
                      .....       .+.........+.....+...|.+++|+|+ +.+|++++.|+.|++||+.....+..+          
T Consensus       178 ~~~~~-------~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-g~~l~s~~~d~~i~iwd~~~~~~~~~~----------  239 (371)
T d1k8kc_         178 RPAPT-------PWGSKMPFGELMFESSSSCGWVHGVCFSAN-GSRVAWVSHDSTVCLADADKKMAVATL----------  239 (371)
T ss_dssp             CCCCB-------TTBSCCCTTCEEEECCCCSSCEEEEEECSS-SSEEEEEETTTEEEEEEGGGTTEEEEE----------
T ss_pred             ccccc-------cccccccceeeeeeccCccCcEEEEEeecc-cccccccccCCcceEEeeecccceeee----------
Confidence            11110       000011111112233457788999999995 789999999999999999876533222          


Q ss_pred             ccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004468          265 NYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (751)
Q Consensus       265 ~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~  310 (751)
                                .+|.. +|++++|+|++++|++ +.|+.+++|....
T Consensus       240 ----------~~~~~-~v~s~~fs~d~~~la~-g~d~~~~~~~~~~  273 (371)
T d1k8kc_         240 ----------ASETL-PLLAVTFITESSLVAA-GHDCFPVLFTYDS  273 (371)
T ss_dssp             ----------ECSSC-CEEEEEEEETTEEEEE-ETTSSCEEEEEET
T ss_pred             ----------ecccc-cceeeeecCCCCEEEE-EcCCceEEEEeeC
Confidence                      12322 6999999999977665 5578877777665

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.2e-28  Score=261.11  Aligned_cols=221  Identities=14%  Similarity=0.220  Sum_probs=180.6

Q ss_pred             ccccccchhhhcc-cc--ccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCC--eEEEEecccCCcceEEEEE
Q 004468           27 NHSLQMHSSLVRR-LS--QERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSR--KLLHSIETGHSANVFCTKF  101 (751)
Q Consensus        27 ~~~l~~~~~~i~~-~~--~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~--~~~~~l~~~h~~~V~~v~f  101 (751)
                      +..+++|+..-.. ..  ......+|.+.|++|+|+|+|++||+|+.|++|+|||+...  +....+ .+|...|.+++|
T Consensus        71 dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~v~~~~~  149 (337)
T d1gxra_          71 KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAEL-TSSAPACYALAI  149 (337)
T ss_dssp             BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEE-ECSSSCEEEEEE
T ss_pred             CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeeccccccccccccccccccccc-cccccccccccc
Confidence            5668888643221 12  23345689999999999999999999999999999998743  455566 789999999999


Q ss_pred             ecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCC
Q 004468          102 VPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGS  181 (751)
Q Consensus       102 sp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~  181 (751)
                      +|+  +.++++++.|+.|++|++...          ++......|...|++++|++ ++..+++++.||.|++||+++++
T Consensus       150 ~~~--~~~l~s~~~d~~i~~~~~~~~----------~~~~~~~~~~~~v~~l~~s~-~~~~~~~~~~d~~v~i~d~~~~~  216 (337)
T d1gxra_         150 SPD--SKVCFSCCSDGNIAVWDLHNQ----------TLVRQFQGHTDGASCIDISN-DGTKLWTGGLDNTVRSWDLREGR  216 (337)
T ss_dssp             CTT--SSEEEEEETTSCEEEEETTTT----------EEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTE
T ss_pred             ccc--ccccccccccccccccccccc----------cccccccccccccccccccc-cccccccccccccccccccccce
Confidence            999  799999999999999999864          45677888999999999999 66899999999999999998865


Q ss_pred             CCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCC
Q 004468          182 SCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPP  261 (751)
Q Consensus       182 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~  261 (751)
                      ..            ..+              .+...|.+++|+|+ +.+|++|+.|+.|++||++.......        
T Consensus       217 ~~------------~~~--------------~~~~~i~~l~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~--------  261 (337)
T d1gxra_         217 QL------------QQH--------------DFTSQIFSLGYCPT-GEWLAVGMESSNVEVLHVNKPDKYQL--------  261 (337)
T ss_dssp             EE------------EEE--------------ECSSCEEEEEECTT-SSEEEEEETTSCEEEEETTSSCEEEE--------
T ss_pred             ee------------ccc--------------ccccceEEEEEccc-ccccceeccccccccccccccccccc--------
Confidence            21            001              14567999999995 78999999999999999987542211        


Q ss_pred             CccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004468          262 PCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (751)
Q Consensus       262 ~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~  310 (751)
                                   ..|.. .|++++|+|+|++|++++.|+.|++||+.+
T Consensus       262 -------------~~~~~-~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~  296 (337)
T d1gxra_         262 -------------HLHES-CVLSLKFAYCGKWFVSTGKDNLLNAWRTPY  296 (337)
T ss_dssp             -------------CCCSS-CEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred             -------------ccccc-ccceEEECCCCCEEEEEeCCCeEEEEECCC
Confidence                         22333 599999999999999999999999999877

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=5.5e-29  Score=259.94  Aligned_cols=221  Identities=14%  Similarity=0.118  Sum_probs=155.7

Q ss_pred             ccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEe--cccCCcceEEEEEecCCCCcEEEEEECCC
Q 004468           40 LSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSI--ETGHSANVFCTKFVPETSDELVVSGAGDA  117 (751)
Q Consensus        40 ~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l--~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg  117 (751)
                      +++++.+++|++.|++|+|+|+|++|||||.||+|+|||+.++.....+  ..+|.+.|.+++|+|+. +.+|++|+.|+
T Consensus         1 ~~~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~-~~~l~sg~~d~   79 (342)
T d1yfqa_           1 MQIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNT-DLQIYVGTVQG   79 (342)
T ss_dssp             CEEEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESS-SEEEEEEETTS
T ss_pred             CCeEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCC-CCEEEEccccc
Confidence            4677889999999999999999999999999999999998654332221  14799999999999985 67899999999


Q ss_pred             cEEEEECCCCCCCCCCCCCCCCceeecccCCcee-EEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceE
Q 004468          118 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVK-KLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNI  196 (751)
Q Consensus       118 ~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~-~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~  196 (751)
                      .|++|++...          ........+...+. ...+.+ +...+++++.|+++++||++......          ..
T Consensus        80 ~v~~w~~~~~----------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~wd~~~~~~~~----------~~  138 (342)
T d1yfqa_          80 EILKVDLIGS----------PSFQALTNNEANLGICRICKY-GDDKLIAASWDGLIEVIDPRNYGDGV----------IA  138 (342)
T ss_dssp             CEEEECSSSS----------SSEEECBSCCCCSCEEEEEEE-TTTEEEEEETTSEEEEECHHHHTTBC----------EE
T ss_pred             ceeeeecccc----------ccccccccccccccccccccc-ccccccccccccccceeeccccccce----------ee
Confidence            9999999864          22334444444443 344444 67899999999999999998754220          11


Q ss_pred             EEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCC
Q 004468          197 LLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHG  276 (751)
Q Consensus       197 l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  276 (751)
                      ......         .........+.+.+ .+..+++++.|+.|++||++..........          .       ..
T Consensus       139 ~~~~~~---------~~~~~~~~~~~~~~-~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~----------~-------~~  191 (342)
T d1yfqa_         139 VKNLNS---------NNTKVKNKIFTMDT-NSSRLIVGMNNSQVQWFRLPLCEDDNGTIE----------E-------SG  191 (342)
T ss_dssp             EEESCS---------SSSSSCCCEEEEEE-CSSEEEEEESTTEEEEEESSCCTTCCCEEE----------E-------CS
T ss_pred             eccccc---------ccccceeeeeeeec-cCCceeeecCCCcEEEEecccCcccceeee----------e-------cc
Confidence            111000         00122334455666 467999999999999999987653322100          0       01


Q ss_pred             ccccceEEEEE-cCCCCEEEEEeCCCcEEEEECCC
Q 004468          277 RSSLHLTHVTF-SPNGEEVLLSYSGEHVYLMDVNH  310 (751)
Q Consensus       277 ~~~~~vt~v~f-spdg~~Ll~~s~d~~I~lwdl~~  310 (751)
                      ... .+.++.+ ..++..+++++.|+.+.+|++..
T Consensus       192 ~~~-~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~  225 (342)
T d1yfqa_         192 LKY-QIRDVALLPKEQEGYACSSIDGRVAVEFFDD  225 (342)
T ss_dssp             CSS-CEEEEEECSGGGCEEEEEETTSEEEEEECCT
T ss_pred             ccc-ceeeeEeecCCCCEEEeecCCCeEEEEEecC
Confidence            111 2445544 45778899999999999999877

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3.5e-28  Score=248.42  Aligned_cols=203  Identities=14%  Similarity=0.294  Sum_probs=152.8

Q ss_pred             ccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcE
Q 004468           40 LSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEV  119 (751)
Q Consensus        40 ~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V  119 (751)
                      ++.++.+.+|...|+|++|  +|++||||+.||+|+|||+.+++++.++ .+|.+.|.+++|.    +++|+||+.|+.|
T Consensus         5 ~~~i~~~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~~l-~~H~~~V~~v~~~----~~~l~s~s~D~~i   77 (293)
T d1p22a2           5 LQRIHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRIL-TGHTGSVLCLQYD----ERVIITGSSDSTV   77 (293)
T ss_dssp             CCCEECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEE-CCCSSCEEEEECC----SSEEEEEETTSCE
T ss_pred             EEEEeccCCCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCCcEEEEE-ecCCCCEeeeecc----cceeecccccccc
Confidence            4566777899999999876  7999999999999999999999999999 8999999999873    5799999999999


Q ss_pred             EEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEe
Q 004468          120 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD  199 (751)
Q Consensus       120 ~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~  199 (751)
                      ++|++....          .......+...  ...+.+ ....++++..++.+++||+......           ..   
T Consensus        78 ~~~~~~~~~----------~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~---  130 (293)
T d1p22a2          78 RVWDVNTGE----------MLNTLIHHCEA--VLHLRF-NNGMMVTCSKDRSIAVWDMASPTDI-----------TL---  130 (293)
T ss_dssp             EEEESSSCC----------EEEEECCCCSC--EEEEEC-CTTEEEEEETTSCEEEEECSSSSCC-----------EE---
T ss_pred             ccccccccc----------ccccccccccc--cccccc-cccceeecccccceeEeeccccccc-----------cc---
Confidence            999998642          23333333332  233444 4467889999999999999876522           01   


Q ss_pred             cccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccc
Q 004468          200 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS  279 (751)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  279 (751)
                              ......+...+..+.+.+   ..+++++.|+.|++||.++.+.+..+                    .++..
T Consensus       131 --------~~~~~~~~~~v~~~~~~~---~~~~~~s~d~~i~~~d~~~~~~~~~~--------------------~~~~~  179 (293)
T d1p22a2         131 --------RRVLVGHRAAVNVVDFDD---KYIVSASGDRTIKVWNTSTCEFVRTL--------------------NGHKR  179 (293)
T ss_dssp             --------EEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEETTTCCEEEEE--------------------ECCSS
T ss_pred             --------cccccccccccccceecc---cccccccCCCceeeecCCCCcEEEEE--------------------ccccc
Confidence                    111122556677777765   47889999999999999987644322                    12222


Q ss_pred             cceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004468          280 LHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (751)
Q Consensus       280 ~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~  310 (751)
                       .+..+.++  +.+|++++.|+.|++||+.+
T Consensus       180 -~v~~~~~~--~~~l~~~~~dg~i~i~d~~~  207 (293)
T d1p22a2         180 -GIACLQYR--DRLVVSGSSDNTIRLWDIEC  207 (293)
T ss_dssp             -CEEEEEEE--TTEEEEEETTSCEEEEETTT
T ss_pred             -ccccccCC--CCeEEEecCCCEEEEEeccc
Confidence             36666654  67899999999999999877

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1e-28  Score=260.61  Aligned_cols=213  Identities=16%  Similarity=0.244  Sum_probs=154.9

Q ss_pred             cEEEEEECCCCCEEEEEeCCCc-EEEEeCCCC--eEEEEecccC-CcceEEEEEecCCCCcEEEEEECCCcEEEEECCCC
Q 004468           52 CVNAISWNSKGSLLISGSDDTH-INVWSYSSR--KLLHSIETGH-SANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRF  127 (751)
Q Consensus        52 ~V~~l~~s~dg~~LaSgs~Dg~-I~IWd~~~~--~~~~~l~~~h-~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~  127 (751)
                      .+++|+|+|+|+.||.++.+.. |+.|+....  ..+..+ .+| ...|++++|+|..++.+|+||+.||+|+|||+...
T Consensus        19 ~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~-~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~   97 (325)
T d1pgua1          19 FTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQF-TGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFD   97 (325)
T ss_dssp             CCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEE-CTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEE
T ss_pred             CeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEE-eCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCC
Confidence            4678999999999999876643 566765433  345566 676 56899999999765889999999999999999753


Q ss_pred             CCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEe--CCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCce
Q 004468          128 SGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSAS--EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAK  205 (751)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s--~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~  205 (751)
                      ....  .........+..|.++|.+++|++ ++..+++++  .++.+++|+..+++..                      
T Consensus        98 ~~~~--~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~~~~~~~~~~~~~~~~~~----------------------  152 (325)
T d1pgua1          98 KESN--SVEVNVKSEFQVLAGPISDISWDF-EGRRLCVVGEGRDNFGVFISWDSGNSL----------------------  152 (325)
T ss_dssp             GGGT--EEEEEEEEEEECCSSCEEEEEECT-TSSEEEEEECCSSCSEEEEETTTCCEE----------------------
T ss_pred             ccee--eeecccccccccccCcEEEEEECC-CCCccceeeccccceEEEEeecccccc----------------------
Confidence            2110  000011234567899999999999 556666655  4778999998876521                      


Q ss_pred             ecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEE
Q 004468          206 RSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHV  285 (751)
Q Consensus       206 ~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v  285 (751)
                         .....|...|++++|+|+++.++++++.|+.|++||....+......                 ...+|.. .|+++
T Consensus       153 ---~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~-----------------~~~~~~~-~v~~v  211 (325)
T d1pgua1         153 ---GEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDR-----------------THHKQGS-FVRDV  211 (325)
T ss_dssp             ---EECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEEC-----------------SSSCTTC-CEEEE
T ss_pred             ---eeeeecccccccccccccccceEEEeecccccccccccccccceecc-----------------cccCCCC-ccEEe
Confidence               12234678899999999877788999999999999987644221110                 0122333 59999


Q ss_pred             EEcCC-CCEEEEEeCCCcEEEEECCCC
Q 004468          286 TFSPN-GEEVLLSYSGEHVYLMDVNHA  311 (751)
Q Consensus       286 ~fspd-g~~Ll~~s~d~~I~lwdl~~~  311 (751)
                      +|+|+ +.+|++++.|+.|++||+.++
T Consensus       212 ~~~pd~~~~l~s~~~d~~i~iwd~~~~  238 (325)
T d1pgua1         212 EFSPDSGEFVITVGSDRKISCFDGKSG  238 (325)
T ss_dssp             EECSTTCCEEEEEETTCCEEEEETTTC
T ss_pred             eeccccceeccccccccceeeeeeccc
Confidence            99997 678899999999999998773

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.7e-28  Score=263.77  Aligned_cols=222  Identities=20%  Similarity=0.322  Sum_probs=166.5

Q ss_pred             ccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCC
Q 004468           47 EGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSR  126 (751)
Q Consensus        47 ~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~  126 (751)
                      .+|...|++|+|+|+|++|++|+.||+|++||...++.+..+ .+|...|.++.|+++  +..+++|+.++.|++||+..
T Consensus       118 ~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~-~~h~~~v~~~~~~~~--~~~~~~~~~~~~i~~~d~~~  194 (388)
T d1erja_         118 PSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMIL-QGHEQDIYSLDYFPS--GDKLVSGSGDRTVRIWDLRT  194 (388)
T ss_dssp             -CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEECTT--SSEEEEEETTSEEEEEETTT
T ss_pred             cCCCCCEEEEEECCCCCcceeccccccccccccccccccccc-ccccccccccccccc--cccccccccceeeeeeeccc
Confidence            467788999999999999999999999999999999999888 899999999999998  78999999999999999986


Q ss_pred             CCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCcee
Q 004468          127 FSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKR  206 (751)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~  206 (751)
                      .          ....... +.....++.+.+.++.+|++++.||.|++||++++....           .+   ..    
T Consensus       195 ~----------~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~-----------~~---~~----  245 (388)
T d1erja_         195 G----------QCSLTLS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVE-----------RL---DS----  245 (388)
T ss_dssp             T----------EEEEEEE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEE-----------EE---C-----
T ss_pred             c----------ccccccc-cccccccccccCCCCCeEEEEcCCCeEEEeecccCccce-----------ee---cc----
Confidence            3          2233333 455566777877788999999999999999998875320           00   00    


Q ss_pred             cccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEE
Q 004468          207 SLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVT  286 (751)
Q Consensus       207 ~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~  286 (751)
                      .......|...|++++|+| ++.+|++|+.|+.|++||++............. ..+....       ..|.. .|++++
T Consensus       246 ~~~~~~~h~~~v~~l~~s~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-~~~~~~~-------~~~~~-~v~~~~  315 (388)
T d1erja_         246 ENESGTGHKDSVYSVVFTR-DGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNS-GTCEVTY-------IGHKD-FVLSVA  315 (388)
T ss_dssp             -----CCCSSCEEEEEECT-TSSEEEEEETTSEEEEEEC----------------CEEEEE-------ECCSS-CEEEEE
T ss_pred             ccccccCCCCCEEEEEECC-CCCEEEEEECCCcEEEEeccCCccccccccccc-cceeeec-------ccccc-eEEEEE
Confidence            0112234677899999999 478999999999999999987654332211100 0111111       22333 599999


Q ss_pred             EcCCCCEEEEEeCCCcEEEEECCC
Q 004468          287 FSPNGEEVLLSYSGEHVYLMDVNH  310 (751)
Q Consensus       287 fspdg~~Ll~~s~d~~I~lwdl~~  310 (751)
                      |+|+|++|++|+.||.|++||+.+
T Consensus       316 ~s~~~~~l~sg~~dg~i~vwd~~~  339 (388)
T d1erja_         316 TTQNDEYILSGSKDRGVLFWDKKS  339 (388)
T ss_dssp             ECGGGCEEEEEETTSEEEEEETTT
T ss_pred             ECCCCCEEEEEeCCCEEEEEECCC
Confidence            999999999999999999999877

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=1.5e-28  Score=259.40  Aligned_cols=226  Identities=12%  Similarity=0.120  Sum_probs=174.6

Q ss_pred             cccchhhhccccccEEeccCC-CcEEEEEECC--CCCEEEEEeCCCcEEEEeCCCCeEE--------EEecccCCcceEE
Q 004468           30 LQMHSSLVRRLSQERELEGHQ-GCVNAISWNS--KGSLLISGSDDTHINVWSYSSRKLL--------HSIETGHSANVFC   98 (751)
Q Consensus        30 l~~~~~~i~~~~~~~~L~gH~-~~V~~l~~s~--dg~~LaSgs~Dg~I~IWd~~~~~~~--------~~l~~~h~~~V~~   98 (751)
                      ++.++....+......+.+|. ..|++++|+|  +|.+||||+.||+|+|||+..++..        ..+ ..|.+.|.+
T Consensus        42 i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~-~~~~~~v~~  120 (325)
T d1pgua1          42 VRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEF-QVLAGPISD  120 (325)
T ss_dssp             EEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEE-ECCSSCEEE
T ss_pred             EEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeeccccccc-ccccCcEEE
Confidence            344444455556677888985 6799999998  6789999999999999998654321        122 568899999


Q ss_pred             EEEecCCCCcEEEEEEC--CCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEe
Q 004468           99 TKFVPETSDELVVSGAG--DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHD  176 (751)
Q Consensus        99 v~fsp~s~~~~l~sgs~--Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwD  176 (751)
                      ++|+|+  +.+|++++.  ++.+++|+..++          +++..+.+|...|++++|+|+++.++++++.||.|++||
T Consensus       121 v~~s~~--~~~l~~~~~~~~~~~~~~~~~~~----------~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d  188 (325)
T d1pgua1         121 ISWDFE--GRRLCVVGEGRDNFGVFISWDSG----------NSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQ  188 (325)
T ss_dssp             EEECTT--SSEEEEEECCSSCSEEEEETTTC----------CEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEE
T ss_pred             EEECCC--CCccceeeccccceEEEEeeccc----------ccceeeeecccccccccccccccceEEEeeccccccccc
Confidence            999999  788887654  778999999864          557888999999999999997777888999999999999


Q ss_pred             cCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCC
Q 004468          177 FRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQK  256 (751)
Q Consensus       177 lr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~  256 (751)
                      +...+..                      ..+.....+...|++++|+|+.+.+|++++.|+.|++||+++.+.+..+. 
T Consensus       189 ~~~~~~~----------------------~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~-  245 (325)
T d1pgua1         189 GPPFKFS----------------------ASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIE-  245 (325)
T ss_dssp             TTTBEEE----------------------EEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECC-
T ss_pred             ccccccc----------------------eecccccCCCCccEEeeeccccceeccccccccceeeeeecccccccccc-
Confidence            8765411                      11222344677899999999778999999999999999998876544331 


Q ss_pred             CCCCCCccccccccccccCCccc---cceEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 004468          257 RMSPPPCVNYFCPMHLSEHGRSS---LHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (751)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~g~~~---~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~  311 (751)
                                         +|..   ..+.++.| |+|++|++++.|+.|+|||+.++
T Consensus       246 -------------------~~~~~v~~~~~s~~~-~dg~~l~s~s~D~~i~iwd~~~~  283 (325)
T d1pgua1         246 -------------------DDQEPVQGGIFALSW-LDSQKFATVGADATIRVWDVTTS  283 (325)
T ss_dssp             -------------------BTTBCCCSCEEEEEE-SSSSEEEEEETTSEEEEEETTTT
T ss_pred             -------------------ccccccccceeeeec-cCCCEEEEEeCCCeEEEEECCCC
Confidence                               1111   12344444 68999999999999999998873

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=1.1e-27  Score=247.39  Aligned_cols=224  Identities=19%  Similarity=0.307  Sum_probs=184.8

Q ss_pred             ccccccccchhhhccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecC
Q 004468           25 DVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPE  104 (751)
Q Consensus        25 ~~~~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~  104 (751)
                      ..+..+++|+.  .+.+++++|++|.+.|++++|+|++.++++++.++.+.+|+.........+ .+|...+.++.|+|+
T Consensus        36 s~Dg~i~iWd~--~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  112 (317)
T d1vyhc1          36 SEDATIKVWDY--ETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTM-HGHDHNVSSVSIMPN  112 (317)
T ss_dssp             ESSSCEEEEET--TTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECC-CCCSSCEEEEEECSS
T ss_pred             eCCCeEEEEEC--CCCCEEEEEeCCCCcEEEEeeeccccccccccccccccccccccccccccc-ccccccceeeeccCC
Confidence            45788999874  567789999999999999999999999999999999999999888887777 799999999999999


Q ss_pred             CCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCC
Q 004468          105 TSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCP  184 (751)
Q Consensus       105 s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~  184 (751)
                        +..+++++.|+.+++||+..+          ..+..+.+|...+.+++|+| ++.+|++++.||.|++|++++.....
T Consensus       113 --~~~~~~~~~d~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~v~~~~~~~~~~~~  179 (317)
T d1vyhc1         113 --GDHIVSASRDKTIKMWEVQTG----------YCVKTFTGHREWVRMVRPNQ-DGTLIASCSNDQTVRVWVVATKECKA  179 (317)
T ss_dssp             --SSEEEEEETTSEEEEEETTTC----------CEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEE
T ss_pred             --CceEEeeccCcceeEeecccc----------eeeeEEccCCCcceeeeccc-CCCEEEEEeCCCeEEEEeeccceeeE
Confidence              799999999999999999864          45788899999999999999 67899999999999999998875321


Q ss_pred             CCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCC-------------------CCcEEEEEeCCCeEEEEeC
Q 004468          185 PAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISST-------------------RPHLLLVGGSDAFARLYDR  245 (751)
Q Consensus       185 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~-------------------~~~~l~sgs~D~~IriwD~  245 (751)
                      ...                         .+...+.+++|+|.                   .+.++++|+.|+.|++||+
T Consensus       180 ~~~-------------------------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~  234 (317)
T d1vyhc1         180 ELR-------------------------EHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDV  234 (317)
T ss_dssp             EEC-------------------------CCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEET
T ss_pred             EEe-------------------------cCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEEC
Confidence            110                         12223333333332                   2568999999999999999


Q ss_pred             CCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004468          246 RMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (751)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~  310 (751)
                      ++.+++..+                    .+|.. .|++++|+|++++|++++.|+.|+|||+.+
T Consensus       235 ~~~~~~~~~--------------------~~~~~-~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~  278 (317)
T d1vyhc1         235 STGMCLMTL--------------------VGHDN-WVRGVLFHSGGKFILSCADDKTLRVWDYKN  278 (317)
T ss_dssp             TTTEEEEEE--------------------ECCSS-CEEEEEECSSSSCEEEEETTTEEEEECCTT
T ss_pred             CCCcEEEEE--------------------eCCCC-CEEEEEECCCCCEEEEEECCCeEEEEECCC
Confidence            876543322                    23433 599999999999999999999999999766

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=3.7e-28  Score=250.43  Aligned_cols=191  Identities=16%  Similarity=0.146  Sum_probs=140.5

Q ss_pred             ccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcE
Q 004468           40 LSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEV  119 (751)
Q Consensus        40 ~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V  119 (751)
                      -+++++|+||.+.|++|+|+|    |+||+.||+|++||+.++     . .+|...|.+++|+++   ..+++++.|++|
T Consensus         3 ~~~i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~-----~-~~h~~~V~~~~~~~~---~~~~s~s~D~~v   69 (287)
T d1pgua2           3 DEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSM-----H-QDHSNLIVSLDNSKA---QEYSSISWDDTL   69 (287)
T ss_dssp             EEEEEEECCCSSCEEEEETTT----TEEEETTSCEEETTTTEE-----E-CCCCSCEEEEECCST---TCCEEEETTTEE
T ss_pred             cceeEEECCCCCceEEEEECc----EEEEeCCCeEEEEECCCC-----C-CCCCCCEEEEEecCC---CeEEEEeecccc
Confidence            468899999999999999997    999999999999998753     2 589999999999876   568999999999


Q ss_pred             EEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEe
Q 004468          120 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD  199 (751)
Q Consensus       120 ~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~  199 (751)
                      ++|++...              .   ....+..+++++ ++.+++ .+.++.+.+|+..++...           .. ..
T Consensus        70 ~~w~~~~~--------------~---~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~-----------~~-~~  118 (287)
T d1pgua2          70 KVNGITKH--------------E---FGSQPKVASANN-DGFTAV-LTNDDDLLILQSFTGDII-----------KS-VR  118 (287)
T ss_dssp             EETTEEEE--------------E---CSSCEEEEEECS-SSEEEE-EETTSEEEEEETTTCCEE-----------EE-EE
T ss_pred             cccccccc--------------c---cccceeeeeecc-CCceEE-Eeecccceeeeccceeee-----------ee-cc
Confidence            99998731              1   234567788887 545554 456677889988776521           00 00


Q ss_pred             cccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCC-CeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCcc
Q 004468          200 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD-AFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRS  278 (751)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D-~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  278 (751)
                                    ....  ..+++|. +..+++++.| +.|++|++.........                    ....
T Consensus       119 --------------~~~~--~~~~~~~-~~~~~v~~~~~~~v~~~~~~~~~~~~~~--------------------~~~~  161 (287)
T d1pgua2         119 --------------LNSP--GSAVSLS-QNYVAVGLEEGNTIQVFKLSDLEVSFDL--------------------KTPL  161 (287)
T ss_dssp             --------------CSSC--EEEEEEC-SSEEEEEETTTSCEEEEETTEEEEEEEC--------------------SSCC
T ss_pred             --------------ccce--eeeeecc-Ccceeeeccccceeeeeeccccceeeee--------------------eecc
Confidence                          1112  3455664 4567776666 57999998754321111                    0111


Q ss_pred             ccceEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 004468          279 SLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (751)
Q Consensus       279 ~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~  311 (751)
                      ...+++++|+|+|.+|++++.|+.|++||+.++
T Consensus       162 ~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~  194 (287)
T d1pgua2         162 RAKPSYISISPSETYIAAGDVMGKILLYDLQSR  194 (287)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred             CCceeEEEeccCccccccccccccccceeeccc
Confidence            225999999999999999999999999999874

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=1.3e-26  Score=250.98  Aligned_cols=242  Identities=16%  Similarity=0.144  Sum_probs=153.8

Q ss_pred             cEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeE------EEEecccCCcceEEEEE---ecCC--CCcEEE
Q 004468           43 ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKL------LHSIETGHSANVFCTKF---VPET--SDELVV  111 (751)
Q Consensus        43 ~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~------~~~l~~~h~~~V~~v~f---sp~s--~~~~l~  111 (751)
                      ....++|.+.|++|++++  ++|+|||.|++|+|||..+...      .... ..|...+..+..   .+..  ...+++
T Consensus         7 ~~~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (393)
T d1sq9a_           7 ANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSH-FVHKSGLHHVDVLQAIERDAFELCLVA   83 (393)
T ss_dssp             EEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEE-ECCTTCEEEEEEEEEEETTTEEEEEEE
T ss_pred             eecCCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEee-eeccCCceEeeeEeeeccCCCCCcEEE
Confidence            456789999999999874  6999999999999999764421      1112 245544433322   2211  135788


Q ss_pred             EEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCC----CCEEEEEeCCCcEEEEecCCCCCCCCCC
Q 004468          112 SGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGN----PHVVWSASEDGTLRQHDFRQGSSCPPAG  187 (751)
Q Consensus       112 sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~----~~~l~s~s~Dg~I~iwDlr~~~~~~~~~  187 (751)
                      +++.|+.|++|++.....................+...+..++|.++.    +.++++++.||+|++||+..........
T Consensus        84 s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~  163 (393)
T d1sq9a_          84 TTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSL  163 (393)
T ss_dssp             EEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHT
T ss_pred             EEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCccccee
Confidence            999999999999875422110000000011123356677888887743    3678999999999999987543211000


Q ss_pred             CCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccc
Q 004468          188 SSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYF  267 (751)
Q Consensus       188 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~  267 (751)
                      .........+       .........+...+.+++|+|+ + +|++|+.|++|+|||+.+.+++..+.            
T Consensus       164 ~~~~~~~~~~-------~~~~~~~~~~~~~~~~v~~s~d-g-~lasgs~Dg~i~iwd~~~~~~~~~~~------------  222 (393)
T d1sq9a_         164 TLNWSPTLEL-------QGTVESPMTPSQFATSVDISER-G-LIATGFNNGTVQISELSTLRPLYNFE------------  222 (393)
T ss_dssp             TTCCCCEEEE-------EEEECCSSSSCCCCCEEEECTT-S-EEEEECTTSEEEEEETTTTEEEEEEE------------
T ss_pred             eeeeccceec-------ccceecccCCCCcEEEEEECCC-C-EEEEEeCCCcEEEEeecccccccccc------------
Confidence            0000000001       0112222334566889999995 3 89999999999999998876543321            


Q ss_pred             cccccccCCccccceEEEEEcCCCCEEEEEeCCC---cEEEEECCCC
Q 004468          268 CPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGE---HVYLMDVNHA  311 (751)
Q Consensus       268 ~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~---~I~lwdl~~~  311 (751)
                       +.+ ...+|.. +|++++|+|||++|++++.|+   .|+|||+.++
T Consensus       223 -~~~-~l~~h~~-~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g  266 (393)
T d1sq9a_         223 -SQH-SMINNSN-SIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFG  266 (393)
T ss_dssp             -CCC----CCCC-CEEEEEECSSTTEEEEEEEETTEEEEEEEETTTC
T ss_pred             -ccc-ccccccc-eEEEcccccccceeeeecCCCCcceeeecccccc
Confidence             111 1134544 699999999999999999987   4999999885

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.94  E-value=6.7e-26  Score=234.61  Aligned_cols=165  Identities=10%  Similarity=0.130  Sum_probs=123.5

Q ss_pred             CeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceee-cccCCceeEEEEecCCC
Q 004468           82 RKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALY-QCHTRRVKKLAVEVGNP  160 (751)
Q Consensus        82 ~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~-~~h~~~V~~l~~sp~~~  160 (751)
                      |+..+.+ .||.+.|++|+|+|+  +++|+||+.|++|++||+.++          +++..+ .+|...|++++|+| ++
T Consensus         2 g~~~~~~-~GH~~~V~~l~~s~d--g~~l~s~s~Dg~v~vWd~~~~----------~~~~~~~~~h~~~v~~v~~~~-~g   67 (299)
T d1nr0a2           2 GSIDQVR-YGHNKAITALSSSAD--GKTLFSADAEGHINSWDISTG----------ISNRVFPDVHATMITGIKTTS-KG   67 (299)
T ss_dssp             TEEEEEE-CCCSSCEEEEEECTT--SSEEEEEETTSCEEEEETTTC----------CEEECSSCSCSSCEEEEEECT-TS
T ss_pred             CccceEc-CCCCCCcEEEEECCC--CCEEEEEcCCCeEEEEECCCC----------cEEEEEcCCCCCcEEEEEeec-cc
Confidence            4455666 899999999999999  899999999999999999864          334555 47999999999999 55


Q ss_pred             CEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeE
Q 004468          161 HVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFA  240 (751)
Q Consensus       161 ~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~I  240 (751)
                      .+ ++++.|+++++|++.........        .              ....+...+.+++|+|+ +.+++++ .++.+
T Consensus        68 ~~-~~~~~d~~v~~~~~~~~~~~~~~--------~--------------~~~~~~~~~~~~~~s~~-g~~~~~~-~~~~i  122 (299)
T d1nr0a2          68 DL-FTVSWDDHLKVVPAGGSGVDSSK--------A--------------VANKLSSQPLGLAVSAD-GDIAVAA-CYKHI  122 (299)
T ss_dssp             CE-EEEETTTEEEEECSSSSSSCTTS--------C--------------CEEECSSCEEEEEECTT-SSCEEEE-ESSEE
T ss_pred             ee-ecccceeeEEEeccCCccccccc--------c--------------ccccccccccccccccc-ccccccc-ccccc
Confidence            54 57788999999998764321000        0              00113456789999995 5655554 56789


Q ss_pred             EEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004468          241 RLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (751)
Q Consensus       241 riwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~  310 (751)
                      ++|+.......                         .....+++++|+|++++|++++.|+.|++||+.+
T Consensus       123 ~~~~~~~~~~~-------------------------~~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~  167 (299)
T d1nr0a2         123 AIYSHGKLTEV-------------------------PISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSG  167 (299)
T ss_dssp             EEEETTEEEEE-------------------------ECSSCEEEEEECTTSCEEEEEETTSEEEEEEEET
T ss_pred             ccccccccccc-------------------------cccccccccccccccccccccccccccccccccc
Confidence            99996532110                         0011478999999999999999999999999876

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.94  E-value=2.1e-25  Score=233.58  Aligned_cols=222  Identities=18%  Similarity=0.255  Sum_probs=179.8

Q ss_pred             cccccccchhhhccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCe----EEEEe-------------
Q 004468           26 VNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK----LLHSI-------------   88 (751)
Q Consensus        26 ~~~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~----~~~~l-------------   88 (751)
                      .+..+++|+.  .+.+.++++.+|.+.|++++|+|++++|++|+.|+.+++|+.....    ....+             
T Consensus        75 ~Dg~v~iWd~--~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (340)
T d1tbga_          75 QDGKLIIWDS--YTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFL  152 (340)
T ss_dssp             TTTEEEEEET--TTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEE
T ss_pred             CCCceeeeec--ccceeEEEEecccccEEeeEeeccceeeeeecccceeecccccccccccccceecccccccccccccc
Confidence            4678888864  4667788999999999999999999999999999999999965321    11111             


Q ss_pred             ---------------------------cccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCce
Q 004468           89 ---------------------------ETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSA  141 (751)
Q Consensus        89 ---------------------------~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~  141 (751)
                                                 ...+...+....+.+.  +.++++|+.|+.|++||+..+          +++.
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~v~i~d~~~~----------~~~~  220 (340)
T d1tbga_         153 DDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPD--TRLFVSGACDASAKLWDVREG----------MCRQ  220 (340)
T ss_dssp             ETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTT--SSEEEEEETTTEEEEEETTTT----------EEEE
T ss_pred             cccccccccccccccccccccccccccccccceeEeeeccccc--cceeEEeecCceEEEEECCCC----------cEEE
Confidence                                       0234455677777777  789999999999999999864          5678


Q ss_pred             eecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEE
Q 004468          142 LYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSC  221 (751)
Q Consensus       142 ~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i  221 (751)
                      .+.+|...|++++|+| ++.+|++|+.||+|++||++.....                       .......+...|.++
T Consensus       221 ~~~~h~~~i~~v~~~p-~~~~l~s~s~d~~i~~~~~~~~~~~-----------------------~~~~~~~~~~~i~~~  276 (340)
T d1tbga_         221 TFTGHESDINAICFFP-NGNAFATGSDDATCRLFDLRADQEL-----------------------MTYSHDNIICGITSV  276 (340)
T ss_dssp             EECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEE-----------------------EEECCTTCCSCEEEE
T ss_pred             EEeCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeecccccc-----------------------cccccccccCceEEE
Confidence            8999999999999999 6789999999999999999876421                       011122355679999


Q ss_pred             EEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCC
Q 004468          222 DISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGE  301 (751)
Q Consensus       222 ~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~  301 (751)
                      +|+| ++.+|++|+.|+.|++||+.+.+.+..+                    .+|.. +|++++|+|++++|++++.||
T Consensus       277 ~~s~-~~~~l~~g~~dg~i~iwd~~~~~~~~~~--------------------~~H~~-~V~~l~~s~d~~~l~s~s~Dg  334 (340)
T d1tbga_         277 SFSK-SGRLLLAGYDDFNCNVWDALKADRAGVL--------------------AGHDN-RVSCLGVTDDGMAVATGSWDS  334 (340)
T ss_dssp             EECS-SSCEEEEEETTSCEEEEETTTCCEEEEE--------------------CCCSS-CEEEEEECTTSSCEEEEETTS
T ss_pred             EECC-CCCEEEEEECCCEEEEEECCCCcEEEEE--------------------cCCCC-CEEEEEEeCCCCEEEEEccCC
Confidence            9999 4799999999999999999887644332                    34544 699999999999999999999


Q ss_pred             cEEEEE
Q 004468          302 HVYLMD  307 (751)
Q Consensus       302 ~I~lwd  307 (751)
                      .|+|||
T Consensus       335 ~v~iWd  340 (340)
T d1tbga_         335 FLKIWN  340 (340)
T ss_dssp             CEEEEC
T ss_pred             EEEEeC
Confidence            999997

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=2.5e-25  Score=233.78  Aligned_cols=181  Identities=19%  Similarity=0.245  Sum_probs=121.8

Q ss_pred             EEecccCCcce-EEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEE
Q 004468           86 HSIETGHSANV-FCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVW  164 (751)
Q Consensus        86 ~~l~~~h~~~V-~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~  164 (751)
                      .++ .||...| +|++|  +  +++|+||+.|++|+|||+.++          +++..+.+|.+.|++++|+| + .+|+
T Consensus         6 ~tL-~GH~~~vitc~~~--~--~~~l~tgs~Dg~i~vWd~~~~----------~~~~~l~~H~~~V~~l~~s~-~-~~l~   68 (355)
T d1nexb2           6 TTL-RGHMTSVITCLQF--E--DNYVITGADDKMIRVYDSINK----------KFLLQLSGHDGGVWALKYAH-G-GILV   68 (355)
T ss_dssp             EEE-ECCSSSCEEEEEE--E--TTEEEEEETTTEEEEEETTTT----------EEEEEEECCSSCEEEEEEET-T-TEEE
T ss_pred             EEE-CCcCCCcEEEEEE--C--CCEEEEEeCCCeEEEEECCCC----------cEEEEEECCCCCEEEEEEcC-C-CEEE
Confidence            345 8998886 56655  4  679999999999999999864          66889999999999999998 4 5889


Q ss_pred             EEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEe
Q 004468          165 SASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYD  244 (751)
Q Consensus       165 s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD  244 (751)
                      +|+.||+|++|++......              .         .............+.+.+ ++.++++++.|+.|++||
T Consensus        69 s~s~D~~i~iw~~~~~~~~--------------~---------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~i~iw~  124 (355)
T d1nexb2          69 SGSTDRTVRVWDIKKGCCT--------------H---------VFEGHNSTVRCLDIVEYK-NIKYIVTGSRDNTLHVWK  124 (355)
T ss_dssp             EEETTCCEEEEETTTTEEE--------------E---------EECCCSSCEEEEEEEEET-TEEEEEEEETTSEEEEEE
T ss_pred             EEecccccccccccccccc--------------c---------cccccccccccccccccc-ccceeeeecCCCcEEEEE
Confidence            9999999999999876421              0         011112334455667777 478999999999999999


Q ss_pred             CCCCCCccccCCCCCCCCccccccccc-----cccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCC
Q 004468          245 RRMLPPLTSCQKRMSPPPCVNYFCPMH-----LSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAG  312 (751)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~  312 (751)
                      ++...............  .....+..     .....|.   .....+.+++++++++..|+.|++||+.++.
T Consensus       125 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~  192 (355)
T d1nexb2         125 LPKESSVPDHGEEHDYP--LVFHTPEENPYFVGVLRGHM---ASVRTVSGHGNIVVSGSYDNTLIVWDVAQMK  192 (355)
T ss_dssp             CCC-----------CCC--EEESCTTTCTTEEEEEECCS---SCEEEEEEETTEEEEEETTSCEEEEETTTTE
T ss_pred             ccCCceeccccccceec--cceeccccccceeeeeeecc---ccccccccccceeeeecccceeeeeeccccc
Confidence            98765443221111000  00000000     0001111   1234567789999999999999999998853

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.94  E-value=1.6e-25  Score=236.93  Aligned_cols=190  Identities=11%  Similarity=0.069  Sum_probs=148.7

Q ss_pred             EEEECC-CCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCC--cEEEEECCCCCCCC
Q 004468           55 AISWNS-KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA--EVRLFNLSRFSGRG  131 (751)
Q Consensus        55 ~l~~s~-dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg--~V~vwd~~~~~~~~  131 (751)
                      .-.||| ||+++|+++. |.|+|||+..+..++ +  +|...|.+++|+|+  |++|++++.+.  .|++||+..+    
T Consensus         7 ~~~fSP~dG~~~a~~~~-g~v~v~d~~~~~~~~-~--~~~~~v~~~~~spD--g~~l~~~~~~~g~~v~v~d~~~~----   76 (360)
T d1k32a3           7 AEDFSPLDGDLIAFVSR-GQAFIQDVSGTYVLK-V--PEPLRIRYVRRGGD--TKVAFIHGTREGDFLGIYDYRTG----   76 (360)
T ss_dssp             EEEEEECGGGCEEEEET-TEEEEECTTSSBEEE-C--SCCSCEEEEEECSS--SEEEEEEEETTEEEEEEEETTTC----
T ss_pred             cccccCCCCCEEEEEEC-CeEEEEECCCCcEEE-c--cCCCCEEEEEECCC--CCEEEEEEcCCCCEEEEEECCCC----
Confidence            357999 9999999875 699999998877654 3  69999999999999  78888766553  7999999863    


Q ss_pred             CCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCC
Q 004468          132 LDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADP  211 (751)
Q Consensus       132 ~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  211 (751)
                             ....+..|...|.+++|+| ++++|++++.++.+++|++.+++..           . +.             
T Consensus        77 -------~~~~~~~~~~~v~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~-----------~-~~-------------  123 (360)
T d1k32a3          77 -------KAEKFEENLGNVFAMGVDR-NGKFAVVANDRFEIMTVDLETGKPT-----------V-IE-------------  123 (360)
T ss_dssp             -------CEEECCCCCCSEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEE-----------E-EE-------------
T ss_pred             -------cEEEeeCCCceEEeeeecc-cccccceecccccccccccccccee-----------e-ee-------------
Confidence                   3567788999999999999 6789999999999999999876521           1 11             


Q ss_pred             CCCccceEEEEEeCCCCcEEEEEe----------CCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccc
Q 004468          212 PKQTLSLKSCDISSTRPHLLLVGG----------SDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLH  281 (751)
Q Consensus       212 ~~~~~~v~~i~~sp~~~~~l~sgs----------~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  281 (751)
                      ..+...+.+++|+|+ +++|+.+.          .++.+++||+...+....                     ..+ ...
T Consensus       124 ~~~~~~~~~~~~spd-g~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~---------------------~~~-~~~  180 (360)
T d1k32a3         124 RSREAMITDFTISDN-SRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAA---------------------TTE-NSH  180 (360)
T ss_dssp             ECSSSCCCCEEECTT-SCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEEC---------------------SCS-SSB
T ss_pred             ecccccccchhhccc-eeeeeeeccccccceeeccccceeeeccccCceeee---------------------ccc-ccc
Confidence            114456788999995 77887543          455799999986532111                     011 124


Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004468          282 LTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (751)
Q Consensus       282 vt~v~fspdg~~Ll~~s~d~~I~lwdl~~  310 (751)
                      +..++|+|||++|++++.++.+.+||...
T Consensus       181 ~~~~~~spdg~~l~~~s~~~~~~~~d~~~  209 (360)
T d1k32a3         181 DYAPAFDADSKNLYYLSYRSLDPSPDRVV  209 (360)
T ss_dssp             EEEEEECTTSCEEEEEESCCCCCEECSSS
T ss_pred             cccccccCCCCEEEEEeCCCceEcccccc
Confidence            78899999999999999999999999766

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=2.1e-24  Score=224.70  Aligned_cols=176  Identities=10%  Similarity=0.075  Sum_probs=126.1

Q ss_pred             EecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEE
Q 004468           87 SIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSA  166 (751)
Q Consensus        87 ~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~  166 (751)
                      .+.++|...|++|+|+|+  +++||+|+.|++|+|||+......       ..+....+|...|.+++|+|+++.+|++|
T Consensus         5 ~~~~~h~d~I~~l~fsp~--~~~L~s~s~Dg~v~iwd~~~~~~~-------~~~~~~~~h~~~V~~v~f~~~~~~~l~sg   75 (342)
T d1yfqa_           5 QIEQAPKDYISDIKIIPS--KSLLLITSWDGSLTVYKFDIQAKN-------VDLLQSLRYKHPLLCCNFIDNTDLQIYVG   75 (342)
T ss_dssp             ECSSCCSSCEEEEEEEGG--GTEEEEEETTSEEEEEEEETTTTE-------EEEEEEEECSSCEEEEEEEESSSEEEEEE
T ss_pred             EcCCCCCCCEEEEEEeCC--CCEEEEEECCCeEEEEEccCCCcc-------eEEEEecCCCCCEEEEEEeCCCCCEEEEc
Confidence            345899999999999999  899999999999999999754221       11333447999999999999777899999


Q ss_pred             eCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCC
Q 004468          167 SEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRR  246 (751)
Q Consensus       167 s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~  246 (751)
                      +.||+|++|++.........                        ...+........+.+ +...+++++.|+.+++||++
T Consensus        76 ~~d~~v~~w~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~wd~~  130 (342)
T d1yfqa_          76 TVQGEILKVDLIGSPSFQAL------------------------TNNEANLGICRICKY-GDDKLIAASWDGLIEVIDPR  130 (342)
T ss_dssp             ETTSCEEEECSSSSSSEEEC------------------------BSCCCCSCEEEEEEE-TTTEEEEEETTSEEEEECHH
T ss_pred             ccccceeeeecccccccccc------------------------ccccccccccccccc-ccccccccccccccceeecc
Confidence            99999999999876532100                        001122223334444 46899999999999999987


Q ss_pred             CCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 004468          247 MLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (751)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~  311 (751)
                      .........         .     .... .........+.+.+++..+++++.|+.|++||+...
T Consensus       131 ~~~~~~~~~---------~-----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~  180 (342)
T d1yfqa_         131 NYGDGVIAV---------K-----NLNS-NNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLC  180 (342)
T ss_dssp             HHTTBCEEE---------E-----ESCS-SSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCC
T ss_pred             ccccceeee---------c-----cccc-ccccceeeeeeeeccCCceeeecCCCcEEEEecccC
Confidence            654322110         0     0000 011112456778889999999999999999998873

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=8.8e-23  Score=212.80  Aligned_cols=167  Identities=18%  Similarity=0.175  Sum_probs=122.9

Q ss_pred             EeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEe
Q 004468           77 WSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVE  156 (751)
Q Consensus        77 Wd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s  156 (751)
                      |+..+.++...+ +||.+.|.+ +++++  |++|+||+.|++|+|||+.++          +++.++.+|...|.+++|+
T Consensus         1 W~~~~~~~~~~l-~GH~~~V~s-~~~~~--g~~l~sgs~Dg~i~vWd~~~~----------~~~~~~~~h~~~V~~v~~~   66 (342)
T d2ovrb2           1 WRRGELKSPKVL-KGHDDHVIT-CLQFC--GNRIVSGSDDNTLKVWSAVTG----------KCLRTLVGHTGGVWSSQMR   66 (342)
T ss_dssp             HHHSCCCCCEEE-ECSTTSCEE-EEEEE--TTEEEEEETTSCEEEEETTTC----------CEEEECCCCSSCEEEEEEE
T ss_pred             CCCCCCCcCEEE-CCcCCceEE-EEEEC--CCEEEEEeCCCeEEEEECCCC----------CEEEEEeCCCCCEEEEEeC
Confidence            555566667777 899999865 36666  789999999999999999864          5688999999999999998


Q ss_pred             cCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeC
Q 004468          157 VGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGS  236 (751)
Q Consensus       157 p~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~  236 (751)
                      |   .+|++|+.|+++++|+.......             ..            .......+......   ...++.+..
T Consensus        67 ~---~~l~s~s~D~~~~~~~~~~~~~~-------------~~------------~~~~~~~~~~~~~~---~~~~~~~~~  115 (342)
T d2ovrb2          67 D---NIIISGSTDRTLKVWNAETGECI-------------HT------------LYGHTSTVRCMHLH---EKRVVSGSR  115 (342)
T ss_dssp             T---TEEEEEETTSCEEEEETTTTEEE-------------EE------------ECCCSSCEEEEEEE---TTEEEEEET
T ss_pred             C---Cccccceecccccccccccccce-------------ec------------ccccceeEeeeecc---ccccccccc
Confidence            6   48999999999999998765411             00            00122334444443   358889999


Q ss_pred             CCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 004468          237 DAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (751)
Q Consensus       237 D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~  311 (751)
                      |+.|.+|+..+.+....+.                    ..   ......+.+....+++++.|+.|++||+...
T Consensus       116 d~~i~~~~~~~~~~~~~~~--------------------~~---~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~  167 (342)
T d2ovrb2         116 DATLRVWDIETGQCLHVLM--------------------GH---VAAVRCVQYDGRRVVSGAYDFMVKVWDPETE  167 (342)
T ss_dssp             TSEEEEEESSSCCEEEEEE--------------------CC---SSCEEEEEECSSCEEEEETTSCEEEEEGGGT
T ss_pred             ceeEEEeecccccceeeee--------------------cc---cccceeeccccceeeeecCCCeEEEeecccc
Confidence            9999999998765322110                    00   1123345567788999999999999998874

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.2e-21  Score=199.17  Aligned_cols=216  Identities=17%  Similarity=0.277  Sum_probs=163.5

Q ss_pred             ccccccccchhhhccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecC
Q 004468           25 DVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPE  104 (751)
Q Consensus        25 ~~~~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~  104 (751)
                      ..+..+++|+  +.+.+++++|++|++.|++|+|  ++++|+||+.|+.|++|++..+...... ..+....  ..+.+.
T Consensus        32 s~Dg~i~vWd--~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~~~~~~-~~~~~~~--~~~~~~  104 (293)
T d1p22a2          32 LRDNTIKIWD--KNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTL-IHHCEAV--LHLRFN  104 (293)
T ss_dssp             ESSSCEEEEE--SSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEE-CCCCSCE--EEEECC
T ss_pred             eCCCeEEEEE--CCCCcEEEEEecCCCCEeeeec--ccceeecccccccccccccccccccccc-ccccccc--cccccc
Confidence            4578899997  4677899999999999999988  5789999999999999999988877766 3333333  334444


Q ss_pred             CCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCC
Q 004468          105 TSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCP  184 (751)
Q Consensus       105 s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~  184 (751)
                        ...++++..++.+++|++......       .....+..|...|..+.+.+   ..+++++.|++|++||+++++.. 
T Consensus       105 --~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~v~~~~~~~---~~~~~~s~d~~i~~~d~~~~~~~-  171 (293)
T d1p22a2         105 --NGMMVTCSKDRSIAVWDMASPTDI-------TLRRVLVGHRAAVNVVDFDD---KYIVSASGDRTIKVWNTSTCEFV-  171 (293)
T ss_dssp             --TTEEEEEETTSCEEEEECSSSSCC-------EEEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEETTTCCEE-
T ss_pred             --ccceeecccccceeEeeccccccc-------cccccccccccccccceecc---cccccccCCCceeeecCCCCcEE-
Confidence              468999999999999999864321       23556678899998888764   57889999999999999887521 


Q ss_pred             CCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCcc
Q 004468          185 PAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCV  264 (751)
Q Consensus       185 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~  264 (751)
                                ..              ...+...+..+.+++   .++++++.|+.|++||+++...+...          
T Consensus       172 ----------~~--------------~~~~~~~v~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~----------  214 (293)
T d1p22a2         172 ----------RT--------------LNGHKRGIACLQYRD---RLVVSGSSDNTIRLWDIECGACLRVL----------  214 (293)
T ss_dssp             ----------EE--------------EECCSSCEEEEEEET---TEEEEEETTSCEEEEETTTCCEEEEE----------
T ss_pred             ----------EE--------------EcccccccccccCCC---CeEEEecCCCEEEEEecccceeeeee----------
Confidence                      01              112345567777764   58999999999999999876543221          


Q ss_pred             ccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004468          265 NYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (751)
Q Consensus       265 ~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~  310 (751)
                                .++.. .+.  .+++++.+|++++.|+.|++||+..
T Consensus       215 ----------~~~~~-~v~--~~~~~~~~l~sg~~dg~i~iwd~~~  247 (293)
T d1p22a2         215 ----------EGHEE-LVR--CIRFDNKRIVSGAYDGKIKVWDLVA  247 (293)
T ss_dssp             ----------CCCSS-CEE--EEECCSSEEEEEETTSCEEEEEHHH
T ss_pred             ----------cccce-eee--eccccceEEEEEcCCCEEEEEECCC
Confidence                      12222 244  4677889999999999999999765

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.88  E-value=5.2e-22  Score=214.40  Aligned_cols=282  Identities=11%  Similarity=0.115  Sum_probs=181.7

Q ss_pred             ccccccccchhhhcc----ccccEEeccCCCcEEEEEE------CC-CCCEEEEEeCCCcEEEEeCCCCeEE-----EEe
Q 004468           25 DVNHSLQMHSSLVRR----LSQERELEGHQGCVNAISW------NS-KGSLLISGSDDTHINVWSYSSRKLL-----HSI   88 (751)
Q Consensus        25 ~~~~~l~~~~~~i~~----~~~~~~L~gH~~~V~~l~~------s~-dg~~LaSgs~Dg~I~IWd~~~~~~~-----~~l   88 (751)
                      ..+..+++|+.....    .........|...+..+..      +. ++.++++++.||.|++|++......     ...
T Consensus        31 S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~  110 (393)
T d1sq9a_          31 SGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKL  110 (393)
T ss_dssp             ETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEE
T ss_pred             ECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEEeCCCcEEEEEccCCCceeeeecccc
Confidence            457788888743222    2233334456655444332      22 3458889999999999986532211     111


Q ss_pred             ----cccCCcceEEEEEecCCC---CcEEEEEECCCcEEEEECCCCCCCCC----CCCC----CCCceeecccCCceeEE
Q 004468           89 ----ETGHSANVFCTKFVPETS---DELVVSGAGDAEVRLFNLSRFSGRGL----DDNA----ITPSALYQCHTRRVKKL  153 (751)
Q Consensus        89 ----~~~h~~~V~~v~fsp~s~---~~~l~sgs~Dg~V~vwd~~~~~~~~~----~~~~----~~~~~~~~~h~~~V~~l  153 (751)
                          ...+...++.++|.++..   +.++++++.|++|++|++........    ....    .........+...+.++
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  190 (393)
T d1sq9a_         111 DLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSV  190 (393)
T ss_dssp             CCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEE
T ss_pred             ceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeeeccceecccceecccCCCCcEEEE
Confidence                123566788999987631   36899999999999999864211000    0000    00112223456678999


Q ss_pred             EEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEE
Q 004468          154 AVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLV  233 (751)
Q Consensus       154 ~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~s  233 (751)
                      +|+| ++ +|++|+.||+|++||+++++..              ...     .......+|...|++++|+| ++++|++
T Consensus       191 ~~s~-dg-~lasgs~Dg~i~iwd~~~~~~~--------------~~~-----~~~~~l~~h~~~V~~l~~sp-dg~~l~s  248 (393)
T d1sq9a_         191 DISE-RG-LIATGFNNGTVQISELSTLRPL--------------YNF-----ESQHSMINNSNSIRSVKFSP-QGSLLAI  248 (393)
T ss_dssp             EECT-TS-EEEEECTTSEEEEEETTTTEEE--------------EEE-----ECCC---CCCCCEEEEEECS-STTEEEE
T ss_pred             EECC-CC-EEEEEeCCCcEEEEeecccccc--------------ccc-----ccccccccccceEEEccccc-ccceeee
Confidence            9999 43 8899999999999999886522              100     01122345788999999999 5899999


Q ss_pred             EeCCC---eEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004468          234 GGSDA---FARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (751)
Q Consensus       234 gs~D~---~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~  310 (751)
                      |+.|+   .|++||+.+++.+..+..........       ....||.. .|++|+|+|||++|++++.|++|+|||+.+
T Consensus       249 gs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~-------~~~~gH~~-~V~~l~fspd~~~l~S~s~D~~v~vWd~~~  320 (393)
T d1sq9a_         249 AHDSNSFGCITLYETEFGERIGSLSVPTHSSQAS-------LGEFAHSS-WVMSLSFNDSGETLCSAGWDGKLRFWDVKT  320 (393)
T ss_dssp             EEEETTEEEEEEEETTTCCEEEEECBC---------------CCBSBSS-CEEEEEECSSSSEEEEEETTSEEEEEETTT
T ss_pred             ecCCCCcceeeecccccceeeeeeccccccccce-------eeeecccC-ceeeeccCCCCCeeEEECCCCEEEEEECCC
Confidence            99987   59999999887665543222111111       11246766 699999999999999999999999999999


Q ss_pred             CCcceeeeecCCCce----eEEeCCCCCCc
Q 004468          311 AGGRAMRYTVGDASK----IMSFTPTLNGL  336 (751)
Q Consensus       311 ~~~~~~~~~~~~~~~----~~~~sp~~~~~  336 (751)
                      +.....+..|...+.    .++|+|....+
T Consensus       321 g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~  350 (393)
T d1sq9a_         321 KERITTLNMHCDDIEIEEDILAVDEHGDSL  350 (393)
T ss_dssp             TEEEEEEECCGGGCSSGGGCCCBCTTSCBC
T ss_pred             CCEEEEECCcCCcccCCccEEEECCCCCEE
Confidence            866666555544443    35666665543

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.87  E-value=4.4e-21  Score=209.54  Aligned_cols=206  Identities=11%  Similarity=0.044  Sum_probs=135.9

Q ss_pred             EEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceee
Q 004468           64 LLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALY  143 (751)
Q Consensus        64 ~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~  143 (751)
                      ++++++.||+|+|||+.+++.+.++ ..| ..+..++|+|+  |++|++++.|++|++||+.+.+....     ..+...
T Consensus        34 ~~V~~~~dg~v~vwD~~t~~~~~~l-~~g-~~~~~vafSPD--Gk~l~~~~~d~~v~vwd~~t~~~~~~-----~~i~~~  104 (426)
T d1hzua2          34 FSVTLRDAGQIALVDGDSKKIVKVI-DTG-YAVHISRMSAS--GRYLLVIGRDARIDMIDLWAKEPTKV-----AEIKIG  104 (426)
T ss_dssp             EEEEETTTTEEEEEETTTCSEEEEE-ECC-SSEEEEEECTT--SCEEEEEETTSEEEEEETTSSSCEEE-----EEEECC
T ss_pred             EEEEEcCCCEEEEEECCCCcEEEEE-eCC-CCeeEEEECCC--CCEEEEEeCCCCEEEEEccCCceeEE-----EEEeCC
Confidence            6688999999999999999999999 455 45999999999  89999999999999999987532110     112334


Q ss_pred             cccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEE
Q 004468          144 QCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDI  223 (751)
Q Consensus       144 ~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~  223 (751)
                      .+|.+.+.+++|+|++..+++++..++++++||..++...           . ..........  ............+.+
T Consensus       105 ~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~-----------~-~~~~~~~~~~--~~~~~~~~~~~~i~~  170 (426)
T d1hzua2         105 IEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPK-----------Q-IVSTRGMTVD--TQTYHPEPRVAAIIA  170 (426)
T ss_dssp             SEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEE-----------E-EEECCEECSS--SCCEESCCCEEEEEE
T ss_pred             CCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCcccee-----------E-EeeccCCCcc--ceeecCCCceeEEEE
Confidence            4677778888889955445677779999999999887532           1 1110000000  000012233455666


Q ss_pred             eCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeC-CCc
Q 004468          224 SSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GEH  302 (751)
Q Consensus       224 sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~-d~~  302 (751)
                      ++++..++++....+.+.+++........           +. .       .++ ...+..+.|+|+|++++++.. +..
T Consensus       171 s~d~~~~~~~~~~~~~i~~~~~~~~~~~~-----------~~-~-------~~~-~~~~~~~~~~~~g~~~~~a~~~~~~  230 (426)
T d1hzua2         171 SHEHPEFIVNVKETGKVLLVNYKDIDNLT-----------VT-S-------IGA-APFLADGGWDSSHRYFMTAANNSNK  230 (426)
T ss_dssp             CSSSSEEEEEETTTTEEEEEECSSSSSCE-----------EE-E-------EEC-CSSEEEEEECTTSCEEEEEETTCSE
T ss_pred             CCCCCEEEEecCCCCeEEEEEecccccee-----------eE-E-------ecc-CCccEeeeECCCCcEEEeeeecccc
Confidence            77543334444445666666655432111           00 0       011 124889999999999888775 678


Q ss_pred             EEEEECCCCC
Q 004468          303 VYLMDVNHAG  312 (751)
Q Consensus       303 I~lwdl~~~~  312 (751)
                      +.+|+..++.
T Consensus       231 ~~~~~~~~~~  240 (426)
T d1hzua2         231 VAVIDSKDRR  240 (426)
T ss_dssp             EEEEETTTTE
T ss_pred             eeeeeccccc
Confidence            9999999854

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.83  E-value=5e-20  Score=188.73  Aligned_cols=218  Identities=11%  Similarity=0.100  Sum_probs=153.5

Q ss_pred             ccccccccchhhhccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeE---------------E----
Q 004468           25 DVNHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKL---------------L----   85 (751)
Q Consensus        25 ~~~~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~---------------~----   85 (751)
                      ..+..+++|+..       ...++|+..|.++.|++++ .+++++.|++|++|++...+.               +    
T Consensus        28 s~Dg~v~~Wd~~-------~~~~~h~~~V~~~~~~~~~-~~~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (287)
T d1pgua2          28 SYDGRIMEWSSS-------SMHQDHSNLIVSLDNSKAQ-EYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTN   99 (287)
T ss_dssp             ETTSCEEETTTT-------EEECCCCSCEEEEECCSTT-CCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEET
T ss_pred             eCCCeEEEEECC-------CCCCCCCCCEEEEEecCCC-eEEEEeeccccccccccccccccceeeeeeccCCceEEEee
Confidence            456777787632       3457899999999998764 579999999999998643210               0    


Q ss_pred             ----EEecccCC--------cceEEEEEecCCCCcEEEEEECC-CcEEEEECCCCCCCCCCCCCCCCceeecccCCceeE
Q 004468           86 ----HSIETGHS--------ANVFCTKFVPETSDELVVSGAGD-AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKK  152 (751)
Q Consensus        86 ----~~l~~~h~--------~~V~~v~fsp~s~~~~l~sgs~D-g~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  152 (751)
                          ..+ ....        ......+++|+  +..+++++.| +.|++|++....         ........|...|++
T Consensus       100 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~v~~~~~~~~~---------~~~~~~~~~~~~v~~  167 (287)
T d1pgua2         100 DDDLLIL-QSFTGDIIKSVRLNSPGSAVSLS--QNYVAVGLEEGNTIQVFKLSDLE---------VSFDLKTPLRAKPSY  167 (287)
T ss_dssp             TSEEEEE-ETTTCCEEEEEECSSCEEEEEEC--SSEEEEEETTTSCEEEEETTEEE---------EEEECSSCCSSCEEE
T ss_pred             cccceee-eccceeeeeeccccceeeeeecc--Ccceeeeccccceeeeeeccccc---------eeeeeeeccCCceeE
Confidence                000 0000        01123456666  5677777666 479999987431         112223457889999


Q ss_pred             EEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCC------
Q 004468          153 LAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISST------  226 (751)
Q Consensus       153 l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~------  226 (751)
                      ++|+| ++.+|++|+.||.|++||+.++...                        ......|...|.+++|+|.      
T Consensus       168 ~~~s~-~~~~l~~g~~dg~i~i~d~~~~~~~------------------------~~~~~~h~~~v~~~~~~p~~~~~~~  222 (287)
T d1pgua2         168 ISISP-SETYIAAGDVMGKILLYDLQSREVK------------------------TSRWAFRTSKINAISWKPAEKGANE  222 (287)
T ss_dssp             EEECT-TSSEEEEEETTSCEEEEETTTTEEE------------------------ECCSCCCSSCEEEEEECCCC-----
T ss_pred             EEecc-Cccccccccccccccceeecccccc------------------------cccccccccccceeeeccccccccc
Confidence            99999 6789999999999999999876521                        1122346778999999874      


Q ss_pred             ---CCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcE
Q 004468          227 ---RPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHV  303 (751)
Q Consensus       227 ---~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I  303 (751)
                         ++.+|++|+.|+.|+|||+++....            +..+       .+|.. .|++++|+|++ .|++++.|+.|
T Consensus       223 ~~~~~~~l~sgs~D~~i~iw~~~~~~~~------------~~~~-------~~h~~-~V~~v~~~~~~-~l~s~g~D~~v  281 (287)
T d1pgua2         223 EEIEEDLVATGSLDTNIFIYSVKRPMKI------------IKAL-------NAHKD-GVNNLLWETPS-TLVSSGADACI  281 (287)
T ss_dssp             -CCSCCEEEEEETTSCEEEEESSCTTCC------------EEET-------TSSTT-CEEEEEEEETT-EEEEEETTSCE
T ss_pred             ccCCCCeeEeecCCCeEEEEECCCCCeE------------EEEe-------CCCCC-CeEEEEECCCC-EEEEEECCCeE
Confidence               3568999999999999998753311            1111       34554 59999999987 58999999999


Q ss_pred             EEEEC
Q 004468          304 YLMDV  308 (751)
Q Consensus       304 ~lwdl  308 (751)
                      ++||+
T Consensus       282 ~iW~i  286 (287)
T d1pgua2         282 KRWNV  286 (287)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            99996

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.83  E-value=5.7e-20  Score=200.96  Aligned_cols=206  Identities=10%  Similarity=-0.002  Sum_probs=145.4

Q ss_pred             EEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceee
Q 004468           64 LLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALY  143 (751)
Q Consensus        64 ~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~  143 (751)
                      ++++.+.||+|.|||..+++++..+. .| ..+..++|+|+  |++|++++.|++|++||+.+......     ..+...
T Consensus        34 ~~v~~~d~g~v~v~D~~t~~v~~~~~-~g-~~~~~v~fSpD--G~~l~~~s~dg~v~~~d~~t~~~~~~-----~~i~~~  104 (432)
T d1qksa2          34 FSVTLRDAGQIALIDGSTYEIKTVLD-TG-YAVHISRLSAS--GRYLFVIGRDGKVNMIDLWMKEPTTV-----AEIKIG  104 (432)
T ss_dssp             EEEEETTTTEEEEEETTTCCEEEEEE-CS-SCEEEEEECTT--SCEEEEEETTSEEEEEETTSSSCCEE-----EEEECC
T ss_pred             EEEEEcCCCEEEEEECCCCcEEEEEe-CC-CCeeEEEECCC--CCEEEEEcCCCCEEEEEeeCCCceEE-----EEEecC
Confidence            46899999999999999999999994 44 35999999999  89999999999999999986532110     123334


Q ss_pred             cccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEE
Q 004468          144 QCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDI  223 (751)
Q Consensus       144 ~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~  223 (751)
                      ..|.+.+.+.+|+|++..++++++.+++|++||..+++...           .+ ....  ................+.+
T Consensus       105 ~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~-----------~~-~~~~--~~~~~~~~~~~~~~~~v~~  170 (432)
T d1qksa2         105 SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKK-----------IQ-STRG--MTYDEQEYHPEPRVAAILA  170 (432)
T ss_dssp             SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEE-----------EE-ECCE--ECTTTCCEESCCCEEEEEE
T ss_pred             CCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCcccccee-----------ee-ccCC--ccccceeccCCCceeEEEE
Confidence            56777777778888554466889999999999999876321           11 0000  0000001113345677889


Q ss_pred             eCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeC-CCc
Q 004468          224 SSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS-GEH  302 (751)
Q Consensus       224 sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~-d~~  302 (751)
                      +|++..++++...++.|.+||....+....           ..+         +....+..++|+|||+++++++. ++.
T Consensus       171 s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~-----------~~i---------~~g~~~~~~~~spdg~~~~va~~~~~~  230 (432)
T d1qksa2         171 SHYRPEFIVNVKETGKILLVDYTDLNNLKT-----------TEI---------SAERFLHDGGLDGSHRYFITAANARNK  230 (432)
T ss_dssp             CSSSSEEEEEETTTTEEEEEETTCSSEEEE-----------EEE---------ECCSSEEEEEECTTSCEEEEEEGGGTE
T ss_pred             CCCCCEEEEEEccCCeEEEEEccCCCcceE-----------EEE---------cccCccccceECCCCCEEEEeccccce
Confidence            997666677778889999999876542211           000         11124788999999998887776 678


Q ss_pred             EEEEECCCCC
Q 004468          303 VYLMDVNHAG  312 (751)
Q Consensus       303 I~lwdl~~~~  312 (751)
                      |.++|..+..
T Consensus       231 v~v~d~~~~~  240 (432)
T d1qksa2         231 LVVIDTKEGK  240 (432)
T ss_dssp             EEEEETTTTE
T ss_pred             EEEeecccce
Confidence            9999998843

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.82  E-value=1.6e-19  Score=190.23  Aligned_cols=159  Identities=9%  Similarity=0.091  Sum_probs=128.7

Q ss_pred             cCCCcEEEEEECCCCCEEEEEeCCC--cEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECC
Q 004468           48 GHQGCVNAISWNSKGSLLISGSDDT--HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLS  125 (751)
Q Consensus        48 gH~~~V~~l~~s~dg~~LaSgs~Dg--~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~  125 (751)
                      +|.+.|.+++|+|||++|++++.|.  .|+|||..+++.. .+ ..|...|.+++|+|+  +++|++++.++.+++|++.
T Consensus        40 ~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~-~~-~~~~~~v~~~~~spd--g~~l~~~~~~~~~~~~~~~  115 (360)
T d1k32a3          40 PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE-KF-EENLGNVFAMGVDRN--GKFAVVANDRFEIMTVDLE  115 (360)
T ss_dssp             SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEE-EC-CCCCCSEEEEEECTT--SSEEEEEETTSEEEEEETT
T ss_pred             cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEE-Ee-eCCCceEEeeeeccc--ccccceecccccccccccc
Confidence            7999999999999999999877553  7999999887655 44 689999999999999  8999999999999999998


Q ss_pred             CCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEe----------CCCcEEEEecCCCCCCCCCCCCCCccce
Q 004468          126 RFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSAS----------EDGTLRQHDFRQGSSCPPAGSSHQECRN  195 (751)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s----------~Dg~I~iwDlr~~~~~~~~~~~~~~~~~  195 (751)
                      ..          +....+..|...+.+++|+| ++.+|+.++          .++.+++||+.+++..            
T Consensus       116 ~~----------~~~~~~~~~~~~~~~~~~sp-dg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~------------  172 (360)
T d1k32a3         116 TG----------KPTVIERSREAMITDFTISD-NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIF------------  172 (360)
T ss_dssp             TC----------CEEEEEECSSSCCCCEEECT-TSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEE------------
T ss_pred             cc----------ceeeeeecccccccchhhcc-ceeeeeeeccccccceeeccccceeeeccccCcee------------
Confidence            64          44677888999999999999 567776543          3456888888765421            


Q ss_pred             EEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCC
Q 004468          196 ILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRML  248 (751)
Q Consensus       196 ~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~  248 (751)
                                 .   ...+...+..+.|+| ++++|++++.|+.+++||....
T Consensus       173 -----------~---~~~~~~~~~~~~~sp-dg~~l~~~s~~~~~~~~d~~~~  210 (360)
T d1k32a3         173 -----------A---ATTENSHDYAPAFDA-DSKNLYYLSYRSLDPSPDRVVL  210 (360)
T ss_dssp             -----------E---CSCSSSBEEEEEECT-TSCEEEEEESCCCCCEECSSSS
T ss_pred             -----------e---ecccccccccccccC-CCCEEEEEeCCCceEccccccc
Confidence                       0   111345678899999 5899999999999999997553

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.82  E-value=1.5e-19  Score=197.51  Aligned_cols=229  Identities=10%  Similarity=0.069  Sum_probs=157.5

Q ss_pred             ccccccchhhhccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCe--EEEEec--ccCCcceEEEEEe
Q 004468           27 NHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRK--LLHSIE--TGHSANVFCTKFV  102 (751)
Q Consensus        27 ~~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~--~~~~l~--~~h~~~V~~v~fs  102 (751)
                      +.++.+++  ..+.+++++|..|. .|..++|||||++|++++.|++|.+||+.+++  .+..+.  .+|.+.+++..|+
T Consensus        41 ~g~v~v~D--~~t~~v~~~~~~g~-~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~S  117 (432)
T d1qksa2          41 AGQIALID--GSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEG  117 (432)
T ss_dssp             TTEEEEEE--TTTCCEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTT
T ss_pred             CCEEEEEE--CCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccC
Confidence            34556665  56778899998874 69999999999999999999999999998765  333332  3567778888899


Q ss_pred             cCCCCcEE-EEEECCCcEEEEECCCCCCCCCCCCCCCCceeecc-----------cCCceeEEEEecCCCCEEEEEeCCC
Q 004468          103 PETSDELV-VSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQC-----------HTRRVKKLAVEVGNPHVVWSASEDG  170 (751)
Q Consensus       103 p~s~~~~l-~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~-----------h~~~V~~l~~sp~~~~~l~s~s~Dg  170 (751)
                      |+  |++| ++++.+++|+|||..++          +++..+..           +...+..+.++|++..++++...++
T Consensus       118 pD--G~~l~vs~~~~~~v~i~d~~t~----------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~  185 (432)
T d1qksa2         118 WE--DKYAIAGAYWPPQYVIMDGETL----------EPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETG  185 (432)
T ss_dssp             CT--TTEEEEEEEETTEEEEEETTTC----------CEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTT
T ss_pred             CC--CCEEEEEcCCCCeEEEEeCccc----------cceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCC
Confidence            99  7765 78899999999999875          23333332           4556677889997666778888899


Q ss_pred             cEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEE-eCCCeEEEEeCCCCC
Q 004468          171 TLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVG-GSDAFARLYDRRMLP  249 (751)
Q Consensus       171 ~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sg-s~D~~IriwD~~~~~  249 (751)
                      .|.+||..+.+..            .+....            ....+..++|+|+ +++++++ ..+..|.++|..+.+
T Consensus       186 ~i~~~d~~~~~~~------------~~~~i~------------~g~~~~~~~~spd-g~~~~va~~~~~~v~v~d~~~~~  240 (432)
T d1qksa2         186 KILLVDYTDLNNL------------KTTEIS------------AERFLHDGGLDGS-HRYFITAANARNKLVVIDTKEGK  240 (432)
T ss_dssp             EEEEEETTCSSEE------------EEEEEE------------CCSSEEEEEECTT-SCEEEEEEGGGTEEEEEETTTTE
T ss_pred             eEEEEEccCCCcc------------eEEEEc------------ccCccccceECCC-CCEEEEeccccceEEEeecccce
Confidence            9999998775421            112111            1235778999996 5655555 456789999998765


Q ss_pred             CccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEe-CCCcEEEEECCCC
Q 004468          250 PLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSY-SGEHVYLMDVNHA  311 (751)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s-~d~~I~lwdl~~~  311 (751)
                      .+........               ..+.. ......+...+....+.. .++.|.+|+....
T Consensus       241 ~~~~~~~g~~---------------~~~~~-~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~  287 (432)
T d1qksa2         241 LVAIEDTGGQ---------------TPHPG-RGANFVHPTFGPVWATSHMGDDSVALIGTDPE  287 (432)
T ss_dssp             EEEEEECSSS---------------SBCCT-TCEEEEETTTEEEEEEEBSSSSEEEEEECCTT
T ss_pred             EEEEeccCcc---------------ccccC-cccceecCCCCceecccccCCceEEecccccc
Confidence            4433211100               00111 234455555565555544 3889999998773

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.78  E-value=3.5e-17  Score=167.50  Aligned_cols=183  Identities=15%  Similarity=0.176  Sum_probs=134.7

Q ss_pred             EEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEE-EEEECCCcEEEEECCCCCCCCCCCCCCCCceee
Q 004468           65 LISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELV-VSGAGDAEVRLFNLSRFSGRGLDDNAITPSALY  143 (751)
Q Consensus        65 LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l-~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~  143 (751)
                      .++++.|++|.|||+.+++.+.++.  ....+..++|+|+  |++| ++++.++.|++||+.+.          +.+..+
T Consensus         5 yV~~~~~~~v~v~D~~t~~~~~~i~--~g~~p~~va~spd--G~~l~v~~~~~~~i~v~d~~t~----------~~~~~~   70 (301)
T d1l0qa2           5 YIANSESDNISVIDVTSNKVTATIP--VGSNPMGAVISPD--GTKVYVANAHSNDVSIIDTATN----------NVIATV   70 (301)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEEE--CSSSEEEEEECTT--SSEEEEEEGGGTEEEEEETTTT----------EEEEEE
T ss_pred             EEEECCCCEEEEEECCCCeEEEEEE--CCCCceEEEEeCC--CCEEEEEECCCCEEEEEECCCC----------ceeeee
Confidence            4577899999999999999999884  3356889999999  7766 57778999999999864          446667


Q ss_pred             cccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEE
Q 004468          144 QCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDI  223 (751)
Q Consensus       144 ~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~  223 (751)
                      ..|. .+..++|++++..+++++..++.+.+||..+++..           . .+.              ......++.|
T Consensus        71 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~-~~~--------------~~~~~~~~~~  123 (301)
T d1l0qa2          71 PAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVA-----------G-TVK--------------TGKSPLGLAL  123 (301)
T ss_dssp             ECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE-----------E-EEE--------------CSSSEEEEEE
T ss_pred             eccc-cccccccccccccccccccccceeeecccccceee-----------e-ecc--------------ccccceEEEe
Confidence            6665 46889999966667777888899999999876521           0 000              2345678999


Q ss_pred             eCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCC-Cc
Q 004468          224 SSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG-EH  302 (751)
Q Consensus       224 sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d-~~  302 (751)
                      +|++..+++++..+..+.+|+..+......+.                    .+  ..+..++++|++++++++..+ +.
T Consensus       124 ~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~--~~~~~~~~~~~~~~~~~~~~~~~~  181 (301)
T d1l0qa2         124 SPDGKKLYVTNNGDKTVSVINTVTKAVINTVS--------------------VG--RSPKGIAVTPDGTKVYVANFDSMS  181 (301)
T ss_dssp             CTTSSEEEEEETTTTEEEEEETTTTEEEEEEE--------------------CC--SSEEEEEECTTSSEEEEEETTTTE
T ss_pred             ecCCCeeeeeeccccceeeeeccccceeeecc--------------------cC--CCceEEEeeccccceeeecccccc
Confidence            99755566777788999999998765332210                    01  137889999999998888765 45


Q ss_pred             EEEEECCC
Q 004468          303 VYLMDVNH  310 (751)
Q Consensus       303 I~lwdl~~  310 (751)
                      +.+|+...
T Consensus       182 ~~~~~~~~  189 (301)
T d1l0qa2         182 ISVIDTVT  189 (301)
T ss_dssp             EEEEETTT
T ss_pred             cccccccc
Confidence            55565444

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.77  E-value=3e-18  Score=186.70  Aligned_cols=199  Identities=8%  Similarity=0.015  Sum_probs=135.6

Q ss_pred             ccccccchhhhccccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEE--Ee--cccCCcceEEEEEe
Q 004468           27 NHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLH--SI--ETGHSANVFCTKFV  102 (751)
Q Consensus        27 ~~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~--~l--~~~h~~~V~~v~fs  102 (751)
                      +.++++|+  ..+.+++++|..|. .|..++|||||++|++++.|++|++||+.+++...  .+  ..+|.+.+++++|+
T Consensus        41 dg~v~vwD--~~t~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~s  117 (426)
T d1hzua2          41 AGQIALVD--GDSKKIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKG  117 (426)
T ss_dssp             TTEEEEEE--TTTCSEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTT
T ss_pred             CCEEEEEE--CCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeec
Confidence            56778876  45678889999885 59999999999999999999999999999886433  22  13677788899999


Q ss_pred             cCCCCcEE-EEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCC
Q 004468          103 PETSDELV-VSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGS  181 (751)
Q Consensus       103 p~s~~~~l-~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~  181 (751)
                      |+  |++| +++..++.+++||....          .++..+..|...+..+++.+.+....+..+.|+...++......
T Consensus       118 pD--G~~l~v~~~~~~~v~i~d~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~  185 (426)
T d1hzua2         118 YE--DRYTIAGAYWPPQFAIMDGETL----------EPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETG  185 (426)
T ss_dssp             CT--TTEEEEEEEESSEEEEEETTTC----------CEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTT
T ss_pred             CC--CCEEEEeecCCCeEEEEcCCcc----------ceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCC
Confidence            99  7765 56668999999999875          44666777776666666666443455566666666665544322


Q ss_pred             CCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccc
Q 004468          182 SCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTS  253 (751)
Q Consensus       182 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~  253 (751)
                      .            ..++.........+. ...+...+..+.|+|++..++++...+..+.+|+....+.+..
T Consensus       186 ~------------i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~  244 (426)
T d1hzua2         186 K------------VLLVNYKDIDNLTVT-SIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSAL  244 (426)
T ss_dssp             E------------EEEEECSSSSSCEEE-EEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEE
T ss_pred             e------------EEEEEeccccceeeE-EeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEE
Confidence            1            111111111100000 0113456788999997555555556778899999988765443

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.73  E-value=1.2e-15  Score=155.75  Aligned_cols=218  Identities=9%  Similarity=0.127  Sum_probs=154.6

Q ss_pred             ccccccchhhhccccccEEeccCCCcEEEEEECCCCCEE-EEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCC
Q 004468           27 NHSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLL-ISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPET  105 (751)
Q Consensus        27 ~~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~~L-aSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s  105 (751)
                      +..+.+++  ..+.+.++++... +.+..++|+|||++| ++++.++.|.+||+.+++.+..+ ..|. .+..+.|+++.
T Consensus        11 ~~~v~v~D--~~t~~~~~~i~~g-~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~-~~~~-~~~~~~~~~~~   85 (301)
T d1l0qa2          11 SDNISVID--VTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATV-PAGS-SPQGVAVSPDG   85 (301)
T ss_dssp             TTEEEEEE--TTTTEEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEE-ECSS-SEEEEEECTTS
T ss_pred             CCEEEEEE--CCCCeEEEEEECC-CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeee-eccc-ccccccccccc
Confidence            44566665  3556677777654 557899999999977 57778999999999999999888 4554 47899999993


Q ss_pred             CCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCC
Q 004468          106 SDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPP  185 (751)
Q Consensus       106 ~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~  185 (751)
                       ..+++++..++.+.+|+....          +....+. +...+..++|+|++..+++++..++.+.+|+..+....  
T Consensus        86 -~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~-~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~--  151 (301)
T d1l0qa2          86 -KQVYVTNMASSTLSVIDTTSN----------TVAGTVK-TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVI--  151 (301)
T ss_dssp             -SEEEEEETTTTEEEEEETTTT----------EEEEEEE-CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE--
T ss_pred             -ccccccccccceeeecccccc----------eeeeecc-ccccceEEEeecCCCeeeeeeccccceeeeecccccee--
Confidence             345567778889999999864          3344454 44567889999966666777888999999999876521  


Q ss_pred             CCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEe-CCCeEEEEeCCCCCCccccCCCCCCCCcc
Q 004468          186 AGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGG-SDAFARLYDRRMLPPLTSCQKRMSPPPCV  264 (751)
Q Consensus       186 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs-~D~~IriwD~~~~~~~~~~~~~~~~~~~~  264 (751)
                               ..+ .              ....+..+.++|+ +..+++++ .++.+.+|+..........          
T Consensus       152 ---------~~~-~--------------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------  196 (301)
T d1l0qa2         152 ---------NTV-S--------------VGRSPKGIAVTPD-GTKVYVANFDSMSISVIDTVTNSVIDTV----------  196 (301)
T ss_dssp             ---------EEE-E--------------CCSSEEEEEECTT-SSEEEEEETTTTEEEEEETTTTEEEEEE----------
T ss_pred             ---------eec-c--------------cCCCceEEEeecc-ccceeeecccccccccccccceeeeecc----------
Confidence                     000 0              2234678899996 45555555 4567778877654322111          


Q ss_pred             ccccccccccCCccccceEEEEEcCCCCEEEEEeC---CCcEEEEECCC
Q 004468          265 NYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYS---GEHVYLMDVNH  310 (751)
Q Consensus       265 ~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~---d~~I~lwdl~~  310 (751)
                                  .....+..++|+++|+.++++..   ++.|++||+.+
T Consensus       197 ------------~~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t  233 (301)
T d1l0qa2         197 ------------KVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGT  233 (301)
T ss_dssp             ------------ECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTT
T ss_pred             ------------cccCCcceeeccccccccccccccceeeeeeeeecCC
Confidence                        00113788999999999877654   46899999877

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.71  E-value=1.3e-16  Score=166.23  Aligned_cols=190  Identities=9%  Similarity=0.021  Sum_probs=123.9

Q ss_pred             EEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEE-EEEECCCcEEEEECCCCCCCCCCC
Q 004468           56 ISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELV-VSGAGDAEVRLFNLSRFSGRGLDD  134 (751)
Q Consensus        56 l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l-~sgs~Dg~V~vwd~~~~~~~~~~~  134 (751)
                      ++|++++++|++++.|++|.|||+.+++.+.++...|...+.+++|+|+  |+++ ++++.++.|++||+.++       
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spD--G~~l~v~~~~~~~v~~~d~~t~-------   72 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPD--NRTAYVLNNHYGDIYGIDLDTC-------   72 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTT--SSEEEEEETTTTEEEEEETTTT-------
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCC--CCEEEEEECCCCcEEEEeCccC-------
Confidence            4789999999999999999999999999999885567788999999999  7766 56678999999999864       


Q ss_pred             CCCCCceeecc------cCCceeEEEEecCCCCEEEEEe------------CCCcEEEEecCCCCCCCCCCCCCCccceE
Q 004468          135 NAITPSALYQC------HTRRVKKLAVEVGNPHVVWSAS------------EDGTLRQHDFRQGSSCPPAGSSHQECRNI  196 (751)
Q Consensus       135 ~~~~~~~~~~~------h~~~V~~l~~sp~~~~~l~s~s------------~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~  196 (751)
                         +.+..+..      +...+..++|+| +++.++.++            .++.+.+||..+++......        .
T Consensus        73 ---~~~~~~~~~~~~~~~~~~~~~v~~s~-DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~--------~  140 (346)
T d1jmxb_          73 ---KNTFHANLSSVPGEVGRSMYSFAISP-DGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVR--------T  140 (346)
T ss_dssp             ---EEEEEEESCCSTTEEEECSSCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSE--------E
T ss_pred             ---eeeeeecccccccccCCceEEEEEec-CCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEE--------e
Confidence               22332221      223467899999 556665554            46677788777654221100        0


Q ss_pred             EEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCC
Q 004468          197 LLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHG  276 (751)
Q Consensus       197 l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  276 (751)
                      ..               ....+..+.+++ ++.+++.   +..+.+||..+.+.+..+..                    
T Consensus       141 ~~---------------~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~--------------------  181 (346)
T d1jmxb_         141 FP---------------MPRQVYLMRAAD-DGSLYVA---GPDIYKMDVKTGKYTVALPL--------------------  181 (346)
T ss_dssp             EE---------------CCSSCCCEEECT-TSCEEEE---SSSEEEECTTTCCEEEEECS--------------------
T ss_pred             ee---------------ccCceEEEEecC-CCEEEEe---CCcceEEEccCCCEEEEEec--------------------
Confidence            00               112234455555 4555543   24588999887654332211                    


Q ss_pred             ccccceEEEEEcCCCCEEEEEeC-CCcEEEEE
Q 004468          277 RSSLHLTHVTFSPNGEEVLLSYS-GEHVYLMD  307 (751)
Q Consensus       277 ~~~~~vt~v~fspdg~~Ll~~s~-d~~I~lwd  307 (751)
                      +.  ....+.++|++..++.... ++.+.+++
T Consensus       182 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (346)
T d1jmxb_         182 RN--WNRKGYSAPDVLYFWPHQSPRHEFSMLY  211 (346)
T ss_dssp             TT--CCCTTBCCCBCCCCCCCCCTTCEEEEEE
T ss_pred             CC--CccceEEeccccEEEEEecCCCceEeee
Confidence            00  2344667888887655443 45555554

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.70  E-value=2.8e-16  Score=163.10  Aligned_cols=147  Identities=8%  Similarity=0.010  Sum_probs=103.9

Q ss_pred             CEEEEEeCCCcEEEEeCCCCeEEEEeccc-CCcceEEEEEecCCCCcEE-EEEECCCcEEEEECCCCCCCCCCCCCCCCc
Q 004468           63 SLLISGSDDTHINVWSYSSRKLLHSIETG-HSANVFCTKFVPETSDELV-VSGAGDAEVRLFNLSRFSGRGLDDNAITPS  140 (751)
Q Consensus        63 ~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~-h~~~V~~v~fsp~s~~~~l-~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~  140 (751)
                      ++|++++.|++|.|||+.+++.+..+... +...+.+++|+|+  |+++ ++++.++.|.+||+.++          +.+
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spD--g~~l~v~~~~~~~v~v~D~~t~----------~~~   69 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPG--GRIAYATVNKSESLVKIDLVTG----------ETL   69 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTT--SSEEEEEETTTTEEEEEETTTC----------CEE
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCC--CCEEEEEECCCCeEEEEECCCC----------cEE
Confidence            48999999999999999999999888433 3466889999999  7776 57778999999999875          334


Q ss_pred             eeeccc-----CCceeEEEEecCCCCEEEEEeC------------CCcEEEEecCCCCCCCCCCCCCCccceEEEecccC
Q 004468          141 ALYQCH-----TRRVKKLAVEVGNPHVVWSASE------------DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCG  203 (751)
Q Consensus       141 ~~~~~h-----~~~V~~l~~sp~~~~~l~s~s~------------Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~  203 (751)
                      ..+..+     ...+..++|+| ++..++++..            +..+.+||..++..                     
T Consensus        70 ~~~~~~~~~~~~~~~~~v~~s~-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~---------------------  127 (337)
T d1pbyb_          70 GRIDLSTPEERVKSLFGAALSP-DGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSR---------------------  127 (337)
T ss_dssp             EEEECCBTTEEEECTTCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEE---------------------
T ss_pred             EEEecCCCcccccceeeEEEcC-CCcEEEEeecCCcceeeeccccccceeeccccCCeE---------------------
Confidence            444433     33456799999 5566666654            44556666555431                     


Q ss_pred             ceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCc
Q 004468          204 AKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPL  251 (751)
Q Consensus       204 ~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~  251 (751)
                        .....   ....+..++|+|+ +.++++++.+  +.+||..+.+..
T Consensus       128 --~~~~~---~~~~~~~~~~s~d-g~~l~~~~~~--~~~~d~~~~~~~  167 (337)
T d1pbyb_         128 --RKAFE---APRQITMLAWARD-GSKLYGLGRD--LHVMDPEAGTLV  167 (337)
T ss_dssp             --EEEEE---CCSSCCCEEECTT-SSCEEEESSS--EEEEETTTTEEE
T ss_pred             --EEecc---ccCCceEEEEcCC-CCEEEEEcCC--cceeeeecCcEE
Confidence              11100   1234677899995 7788887654  678998876543

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.67  E-value=1.3e-15  Score=157.84  Aligned_cols=245  Identities=10%  Similarity=0.091  Sum_probs=163.0

Q ss_pred             cccccccchhhhccccccEEecc--CCCcEEEEEECCCCCEE-EEEeCCCcEEEEeCCCCeEEEEecccC-----CcceE
Q 004468           26 VNHSLQMHSSLVRRLSQERELEG--HQGCVNAISWNSKGSLL-ISGSDDTHINVWSYSSRKLLHSIETGH-----SANVF   97 (751)
Q Consensus        26 ~~~~l~~~~~~i~~~~~~~~L~g--H~~~V~~l~~s~dg~~L-aSgs~Dg~I~IWd~~~~~~~~~l~~~h-----~~~V~   97 (751)
                      .+++|++|+.  ++.++++++..  +...+..++|+|||++| ++++.++.|.+||+.+++.+..+ ..+     ...+.
T Consensus         9 ~d~~v~v~D~--~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~-~~~~~~~~~~~~~   85 (337)
T d1pbyb_           9 RPDKLVVIDT--EKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRI-DLSTPEERVKSLF   85 (337)
T ss_dssp             TTTEEEEEET--TTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEE-ECCBTTEEEECTT
T ss_pred             CCCEEEEEEC--CCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEE-ecCCCccccccee
Confidence            3567788764  55667777764  44668899999999987 57778999999999999988877 333     34466


Q ss_pred             EEEEecCCCCcEEEEEE------------CCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEE
Q 004468           98 CTKFVPETSDELVVSGA------------GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWS  165 (751)
Q Consensus        98 ~v~fsp~s~~~~l~sgs------------~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s  165 (751)
                      .++|+|+  +++++++.            .+..+.+||....          +....+. +...+..++|+| ++.++++
T Consensus        86 ~v~~s~d--g~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~----------~~~~~~~-~~~~~~~~~~s~-dg~~l~~  151 (337)
T d1pbyb_          86 GAALSPD--GKTLAIYESPVRLELTHFEVQPTRVALYDAETL----------SRRKAFE-APRQITMLAWAR-DGSKLYG  151 (337)
T ss_dssp             CEEECTT--SSEEEEEEEEEEECSSCEEECCCEEEEEETTTT----------EEEEEEE-CCSSCCCEEECT-TSSCEEE
T ss_pred             eEEEcCC--CcEEEEeecCCcceeeeccccccceeeccccCC----------eEEEecc-ccCCceEEEEcC-CCCEEEE
Confidence            8999999  78887775            4677888998864          3344444 456688999999 5566667


Q ss_pred             EeCCCcEEEEecCCCCCCCCCC-------------------CCCCcc-----------------------ceEEEecccC
Q 004468          166 ASEDGTLRQHDFRQGSSCPPAG-------------------SSHQEC-----------------------RNILLDLRCG  203 (751)
Q Consensus       166 ~s~Dg~I~iwDlr~~~~~~~~~-------------------~~~~~~-----------------------~~~l~~~~~~  203 (751)
                      ++.  .+.+||..+++......                   ......                       ...+++...+
T Consensus       152 ~~~--~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (337)
T d1pbyb_         152 LGR--DLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETG  229 (337)
T ss_dssp             ESS--SEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTC
T ss_pred             EcC--CcceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCC
Confidence            764  46789987754221000                   000000                       0111222222


Q ss_pred             ceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceE
Q 004468          204 AKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLT  283 (751)
Q Consensus       204 ~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt  283 (751)
                      ...... ...+...+..+.++|+ ..+++++  ++.|++||+.+.+.+..+.                     + ...+.
T Consensus       230 ~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~--~~~i~v~d~~~~~~~~~~~---------------------~-~~~~~  283 (337)
T d1pbyb_         230 EMAMRE-VRIMDVFYFSTAVNPA-KTRAFGA--YNVLESFDLEKNASIKRVP---------------------L-PHSYY  283 (337)
T ss_dssp             CEEEEE-EEECSSCEEEEEECTT-SSEEEEE--ESEEEEEETTTTEEEEEEE---------------------C-SSCCC
T ss_pred             cEEEEE-ecCCCcceEEEEeccc-ceEEEEc--cccEEEEECCCCcEEEEEc---------------------C-CCCEE
Confidence            211111 1123345667788884 5666554  5899999999876443221                     0 11478


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECCCCCcce
Q 004468          284 HVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRA  315 (751)
Q Consensus       284 ~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~  315 (751)
                      +++|+|||++|++++.++.|+|||+.+.+...
T Consensus       284 ~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~v~  315 (337)
T d1pbyb_         284 SVNVSTDGSTVWLGGALGDLAAYDAETLEKKG  315 (337)
T ss_dssp             EEEECTTSCEEEEESBSSEEEEEETTTCCEEE
T ss_pred             EEEECCCCCEEEEEeCCCcEEEEECCCCcEEE
Confidence            89999999999999999999999999965443

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.64  E-value=9.6e-14  Score=146.70  Aligned_cols=205  Identities=11%  Similarity=-0.014  Sum_probs=136.9

Q ss_pred             ccCCCcEEEEEECCCCCEEEEE-----eCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEE-------
Q 004468           47 EGHQGCVNAISWNSKGSLLISG-----SDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGA-------  114 (751)
Q Consensus        47 ~gH~~~V~~l~~s~dg~~LaSg-----s~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs-------  114 (751)
                      .+|.+++..++++|||+.++..     +.++.|.|||..+++.+..+ ..+..  ..++|+|+  |++|++++       
T Consensus        17 ~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~-~~~~~--~~~a~SpD--G~~l~va~~~~~~~~   91 (373)
T d2madh_          17 GAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHV-NGGFL--PNPVAAHS--GSEFALASTSFSRIA   91 (373)
T ss_pred             ccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEE-eCCCC--ccEEEcCC--CCEEEEEeecCCccc
Confidence            4688999999999999988764     34567999999999999988 44443  37999999  88888764       


Q ss_pred             ---CCCcEEEEECCCCCCCCCCCCCCCCceeecccCCce-------eEEEEecCCCCEEE-EEeCCCcEEEEecCCCCCC
Q 004468          115 ---GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRV-------KKLAVEVGNPHVVW-SASEDGTLRQHDFRQGSSC  183 (751)
Q Consensus       115 ---~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V-------~~l~~sp~~~~~l~-s~s~Dg~I~iwDlr~~~~~  183 (751)
                         .++.|.|||..++          +++..+..+....       ..+.|++++..+++ ....++.+.+|+....+..
T Consensus        92 ~~~~~~~v~v~D~~t~----------~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~  161 (373)
T d2madh_          92 KGKRTDYVEVFDPVTF----------LPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDD  161 (373)
T ss_pred             ccccceEEEEEECCCC----------cEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEE
Confidence               4678999999975          3344444444332       45677774433332 2234567777776654311


Q ss_pred             CCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCc
Q 004468          184 PPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPC  263 (751)
Q Consensus       184 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~  263 (751)
                                                   .+.....++.++|++...+++.+.|+.+.+||.............      
T Consensus       162 -----------------------------~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~------  206 (373)
T d2madh_         162 -----------------------------QLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGA------  206 (373)
T ss_pred             -----------------------------EEeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeee------
Confidence                                         012335678899976677889999999999999876543221100      


Q ss_pred             cccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 004468          264 VNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (751)
Q Consensus       264 ~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~  311 (751)
                              ....+... ....+.+++++.+ +..+.++.+++|+..+.
T Consensus       207 --------~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~  244 (373)
T d2madh_         207 --------MLTAAQNL-LTQPAQANKSGRI-VWPVYSGKILQADISAA  244 (373)
T ss_pred             --------ccccCccc-eeeeEEECCCceE-EEecCCceEEEEEcCCC
Confidence                    00011111 2455667777654 55667889999998874

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.55  E-value=3e-13  Score=139.87  Aligned_cols=197  Identities=14%  Similarity=0.151  Sum_probs=124.9

Q ss_pred             EEEEEeCCCcEEEEeCCCCeEE--EEecccCCcceEEEEEecCCCCcEEEE-EECCCcEEEEECCCCCCCCCCCCCCCCc
Q 004468           64 LLISGSDDTHINVWSYSSRKLL--HSIETGHSANVFCTKFVPETSDELVVS-GAGDAEVRLFNLSRFSGRGLDDNAITPS  140 (751)
Q Consensus        64 ~LaSgs~Dg~I~IWd~~~~~~~--~~l~~~h~~~V~~v~fsp~s~~~~l~s-gs~Dg~V~vwd~~~~~~~~~~~~~~~~~  140 (751)
                      .+++++.|++|+||++.....+  ... ..|.+.|.+++|+|+  |++|++ +..|+.|++|++.......       ..
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~l~~~~~-~~~~~~v~~la~spD--G~~L~v~~~~d~~i~~~~i~~~~~~~-------~~   75 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGALTLTQV-VDVPGQVQPMVVSPD--KRYLYVGVRPEFRVLAYRIAPDDGAL-------TF   75 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEE-EECSSCCCCEEECTT--SSEEEEEETTTTEEEEEEECTTTCCE-------EE
T ss_pred             EEEECCCCCcEEEEEEcCCCCeEEEEE-EcCCCCEeEEEEeCC--CCEEEEEECCCCeEEEEEEeCCCCcE-------EE
Confidence            4678889999999998654322  222 368899999999999  788754 5558999999998542211       11


Q ss_pred             eeecccCCceeEEEEecCCCCEEEEEe-CCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceE
Q 004468          141 ALYQCHTRRVKKLAVEVGNPHVVWSAS-EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLK  219 (751)
Q Consensus       141 ~~~~~h~~~V~~l~~sp~~~~~l~s~s-~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~  219 (751)
                      .....+...+..++|+| ++++|++++ .+++|.+|+.......            ....           ...+...+.
T Consensus        76 ~~~~~~~~~p~~l~~sp-Dg~~l~v~~~~~~~v~~~~~~~~~~~------------~~~~-----------~~~~~~~~~  131 (333)
T d1ri6a_          76 AAESALPGSLTHISTDH-QGQFVFVGSYNAGNVSVTRLEDGLPV------------GVVD-----------VVEGLDGCH  131 (333)
T ss_dssp             EEEEECSSCCSEEEECT-TSSEEEEEETTTTEEEEEEEETTEEE------------EEEE-----------EECCCTTBC
T ss_pred             eeecccCCCceEEEEcC-CCCEEeecccCCCceeeeccccccce------------eccc-----------ccCCCccce
Confidence            12223456678899999 556666665 5778999987765311            1111           011334567


Q ss_pred             EEEEeCCCCcEEEEEe-CCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEe
Q 004468          220 SCDISSTRPHLLLVGG-SDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSY  298 (751)
Q Consensus       220 ~i~~sp~~~~~l~sgs-~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s  298 (751)
                      ++.++|+ ++++++++ .+..|.+|+..........            .......   ........++|++++.+++...
T Consensus       132 ~v~~s~d-~~~~~~~~~~~~~i~~~~~~~~~~~~~~------------~~~~~~~---~~g~~p~~i~~~~~~~~~~~~~  195 (333)
T d1ri6a_         132 SANISPD-NRTLWVPALKQDRICLFTVSDDGHLVAQ------------DPAEVTT---VEGAGPRHMVFHPNEQYAYCVN  195 (333)
T ss_dssp             CCEECTT-SSEEEEEEGGGTEEEEEEECTTSCEEEE------------EEEEEEC---STTCCEEEEEECTTSSEEEEEE
T ss_pred             EEEeeec-ceeeeccccccceeeEEEeccCCcceee------------eceeeee---ecCCCccEEEEeccceeEEeec
Confidence            8899996 55555554 5678999998764322110            0000000   0112367899999999887665


Q ss_pred             C-CCcEEEEECCC
Q 004468          299 S-GEHVYLMDVNH  310 (751)
Q Consensus       299 ~-d~~I~lwdl~~  310 (751)
                      . .+...+|++..
T Consensus       196 ~~~~~~~v~~~~~  208 (333)
T d1ri6a_         196 ELNSSVDVWELKD  208 (333)
T ss_dssp             TTTTEEEEEESSC
T ss_pred             cccCceEEEeecc
Confidence            4 56777777655

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.55  E-value=6.1e-13  Score=140.39  Aligned_cols=254  Identities=11%  Similarity=0.029  Sum_probs=160.4

Q ss_pred             hhccccccEEeccCCCcEEEEEECCCCCEEEEEe----------CCCcEEEEeCCCCeEEEEecccCCcce-------EE
Q 004468           36 LVRRLSQERELEGHQGCVNAISWNSKGSLLISGS----------DDTHINVWSYSSRKLLHSIETGHSANV-------FC   98 (751)
Q Consensus        36 ~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs----------~Dg~I~IWd~~~~~~~~~l~~~h~~~V-------~~   98 (751)
                      ...+.+.+.++.++...  .++|+|||++|++++          .++.|.|||..+++.+..+ ..+....       ..
T Consensus        53 D~~tg~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~-~~~~~~~~~~~~~~~~  129 (373)
T d2madh_          53 DAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADI-ELPDAPRFDVGPYSWM  129 (373)
T ss_pred             ECCCCCEEEEEeCCCCc--cEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEE-ecCCcceeEeccCCCc
Confidence            35677888888877655  799999999999875          4678999999999988877 4444433       45


Q ss_pred             EEEecCCCCcEEEE--EECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEe
Q 004468           99 TKFVPETSDELVVS--GAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHD  176 (751)
Q Consensus        99 v~fsp~s~~~~l~s--gs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwD  176 (751)
                      +.|+|+  ++.++.  ...++.+.+|+....              ....+...+.++.++|++...+++.+.||++.+||
T Consensus       130 ~~~s~d--g~~~~v~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~  193 (373)
T d2madh_         130 NANTPN--NADLLFFQFAAGPAVGLVVQGGS--------------SDDQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTD  193 (373)
T ss_pred             EEEEeC--CCcEEEEEEcCCCceEEeeccCC--------------eEEEEeccceeEEEecCCCcEEEEEcCCCeEEEEE
Confidence            678888  454443  345677888888742              12234455678899997777888999999999999


Q ss_pred             cCCCCCCCCCCCC---------------C---------CccceEEEecccCceecccCCCCCc----------cceEEEE
Q 004468          177 FRQGSSCPPAGSS---------------H---------QECRNILLDLRCGAKRSLADPPKQT----------LSLKSCD  222 (751)
Q Consensus       177 lr~~~~~~~~~~~---------------~---------~~~~~~l~~~~~~~~~~~~~~~~~~----------~~v~~i~  222 (751)
                      .............               .         ......+++...+....+.......          .....++
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (373)
T d2madh_         194 HAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVA  273 (373)
T ss_pred             cCCceeeEEEeeeccccCccceeeeEEECCCceEEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeE
Confidence            8876543211000               0         0000111222211111111111011          1122344


Q ss_pred             EeCCC---------CcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCE
Q 004468          223 ISSTR---------PHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEE  293 (751)
Q Consensus       223 ~sp~~---------~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~  293 (751)
                      ++|+.         +..+++...++.|.+||..+.+.+..+.                     + ...+..++|+|||+.
T Consensus       274 ~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~---------------------~-~~~~~~~a~spDG~~  331 (373)
T d2madh_         274 YLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS---------------------L-GHDVDAISVAQDGGP  331 (373)
T ss_pred             EecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEec---------------------C-CCCeeEEEECCCCCE
Confidence            44432         2344566677889999998876543321                     1 114789999999995


Q ss_pred             E--EEEeCCCcEEEEECCCCCcceeeeecCCCceeEEeC
Q 004468          294 V--LLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFT  330 (751)
Q Consensus       294 L--l~~s~d~~I~lwdl~~~~~~~~~~~~~~~~~~~~~s  330 (751)
                      +  ++++.|+.|+|||+.+++........+..+..+++.
T Consensus       332 ~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~P~~l~~~  370 (373)
T d2madh_         332 DLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQVLSVM  370 (373)
T ss_pred             EEEEEeCCCCeEEEEECCCCCEEEEECCCCCCCcEEEEe
Confidence            3  567789999999999987655555566666666554

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.50  E-value=8.7e-13  Score=136.65  Aligned_cols=247  Identities=10%  Similarity=0.055  Sum_probs=155.9

Q ss_pred             ccccccchhhhccccccEEec-cCCCcEEEEEECCCCCEE-EEEeCCCcEEEEeCCCCeEEEEeccc-----CCcceEEE
Q 004468           27 NHSLQMHSSLVRRLSQERELE-GHQGCVNAISWNSKGSLL-ISGSDDTHINVWSYSSRKLLHSIETG-----HSANVFCT   99 (751)
Q Consensus        27 ~~~l~~~~~~i~~~~~~~~L~-gH~~~V~~l~~s~dg~~L-aSgs~Dg~I~IWd~~~~~~~~~l~~~-----h~~~V~~v   99 (751)
                      +.++++++.  .+.+++++++ .|...+.+|+|+|||++| ++++.++.|.+||+.+++.+..+...     +...+..+
T Consensus        17 ~~~v~v~D~--~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v   94 (346)
T d1jmxb_          17 PNNLHVVDV--ASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSF   94 (346)
T ss_dssp             TTEEEEEET--TTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCE
T ss_pred             CCEEEEEEC--CCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecccccccccCCceEEE
Confidence            457778765  4667788887 456678999999999976 56678999999999999988776322     22356789


Q ss_pred             EEecCCCCcEEEEEE------------CCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEe
Q 004468          100 KFVPETSDELVVSGA------------GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSAS  167 (751)
Q Consensus       100 ~fsp~s~~~~l~sgs------------~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s  167 (751)
                      +|+|+  |+++++++            .+..+.+|+...+...       ..+... .....+..+.+++ ++.+++++ 
T Consensus        95 ~~s~D--G~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-------~~~~~~-~~~~~~~~~~~~~-~~~~~~~~-  162 (346)
T d1jmxb_          95 AISPD--GKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEA-------KPVRTF-PMPRQVYLMRAAD-DGSLYVAG-  162 (346)
T ss_dssp             EECTT--SSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGB-------CCSEEE-ECCSSCCCEEECT-TSCEEEES-
T ss_pred             EEecC--CCEEEEEecCCcceeeeeccCcceEEEEecccceee-------eEEEee-eccCceEEEEecC-CCEEEEeC-
Confidence            99999  78777664            4778899998764221       111111 1233455566665 55666442 


Q ss_pred             CCCcEEEEecCCCCCCCCCCC-------------------CCCcc-------------------------ceEEEecccC
Q 004468          168 EDGTLRQHDFRQGSSCPPAGS-------------------SHQEC-------------------------RNILLDLRCG  203 (751)
Q Consensus       168 ~Dg~I~iwDlr~~~~~~~~~~-------------------~~~~~-------------------------~~~l~~~~~~  203 (751)
                        +.+.+||+.+++.......                   .....                         ...+++...+
T Consensus       163 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (346)
T d1jmxb_         163 --PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTG  240 (346)
T ss_dssp             --SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTC
T ss_pred             --CcceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCC
Confidence              4578888876543210000                   00000                         0111222222


Q ss_pred             ceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceE
Q 004468          204 AKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLT  283 (751)
Q Consensus       204 ~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt  283 (751)
                      ...... ...+...+..+.+++++. +++.+. ++.|++||..+.+.+..+.                   .++   .+.
T Consensus       241 ~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~-~~~v~v~d~~~~~~~~~~~-------------------~~~---~~~  295 (346)
T d1jmxb_         241 KTHTQE-FADLTELYFTGLRSPKDP-NQIYGV-LNRLAKYDLKQRKLIKAAN-------------------LDH---TYY  295 (346)
T ss_dssp             CEEEEE-EEECSSCEEEEEECSSCT-TEEEEE-ESEEEEEETTTTEEEEEEE-------------------CSS---CCC
T ss_pred             ceEEEE-eecccceeEEEEEeCCCC-EEEEec-CCeEEEEECCCCcEEEEEc-------------------CCC---CEE
Confidence            211111 112344567788888654 444444 4579999998765432211                   111   478


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECCCCCcc
Q 004468          284 HVTFSPNGEEVLLSYSGEHVYLMDVNHAGGR  314 (751)
Q Consensus       284 ~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~  314 (751)
                      +++|+|||++|++++.|+.|++||+.+.+..
T Consensus       296 ~va~s~DG~~l~v~~~d~~v~v~D~~t~~~i  326 (346)
T d1jmxb_         296 CVAFDKKGDKLYLGGTFNDLAVFNPDTLEKV  326 (346)
T ss_dssp             EEEECSSSSCEEEESBSSEEEEEETTTTEEE
T ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECccCCEE
Confidence            9999999999999999999999999986533

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.46  E-value=1.5e-12  Score=135.99  Aligned_cols=196  Identities=9%  Similarity=0.018  Sum_probs=119.7

Q ss_pred             EEECCCCCEEEEEe-----CCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEE----------ECCCcEE
Q 004468           56 ISWNSKGSLLISGS-----DDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSG----------AGDAEVR  120 (751)
Q Consensus        56 l~~s~dg~~LaSgs-----~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sg----------s~Dg~V~  120 (751)
                      .+.+|||+.++...     .+..|.|||..+++.+.++ ..+.  +..++|+|+  |++|+.+          +.|+.|+
T Consensus         7 ~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~-~~g~--~~~~a~SpD--g~~l~v~~~~~~~~~~g~~d~~v~   81 (355)
T d2bbkh_           7 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMI-DGGF--LPNPVVADD--GSFIAHASTVFSRIARGERTDYVE   81 (355)
T ss_dssp             CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEE-EECS--SCEEEECTT--SSCEEEEEEEEEETTEEEEEEEEE
T ss_pred             EeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEE-ECCC--CCceEEcCC--CCEEEEEeCCCccccccCCCCEEE
Confidence            35689999887653     4667999999999999888 4443  347999999  7777653          4578999


Q ss_pred             EEECCCCCCCCCCCCCCCCceeeccc-------CCceeEEEEecCCCCEEEEE--eCCCcEEEEecCCCCCCCCCCCCCC
Q 004468          121 LFNLSRFSGRGLDDNAITPSALYQCH-------TRRVKKLAVEVGNPHVVWSA--SEDGTLRQHDFRQGSSCPPAGSSHQ  191 (751)
Q Consensus       121 vwd~~~~~~~~~~~~~~~~~~~~~~h-------~~~V~~l~~sp~~~~~l~s~--s~Dg~I~iwDlr~~~~~~~~~~~~~  191 (751)
                      +||+.+.          +++..+..+       ......++|+|++ ..++.+  +.+..+.+||..+++..        
T Consensus        82 v~D~~t~----------~~~~~~~~~~~~~~~~~~~~~~~~~s~dg-~~~~v~~~~~~~~~~~~~~~~~~~~--------  142 (355)
T d2bbkh_          82 VFDPVTL----------LPTADIELPDAPRFLVGTYPWMTSLTPDG-KTLLFYQFSPAPAVGVVDLEGKAFK--------  142 (355)
T ss_dssp             EECTTTC----------CEEEEEEETTCCCCCBSCCGGGEEECTTS-SEEEEEECSSSCEEEEEETTTTEEE--------
T ss_pred             EEECCCC----------CEEEEEecCCcceeecCCCCceEEEecCC-CeeEEecCCCCceeeeeecCCCcEe--------
Confidence            9999865          223333222       2334668999954 544444  45678999999876522        


Q ss_pred             ccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccc
Q 004468          192 ECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMH  271 (751)
Q Consensus       192 ~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (751)
                            ............    .......+.+++++..+++....++.+.+++.......                    
T Consensus       143 ------~~~~~~~~~~~~----~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~--------------------  192 (355)
T d2bbkh_         143 ------RMLDVPDCYHIF----PTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPE--------------------  192 (355)
T ss_dssp             ------EEEECCSEEEEE----EEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCT--------------------
T ss_pred             ------eEEecCCcceEe----ecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccce--------------------
Confidence                  000000000000    01123345556643333333344444555554432210                    


Q ss_pred             cccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 004468          272 LSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (751)
Q Consensus       272 ~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~  311 (751)
                           +.. .+....+++++..++.++.++.+++|++..+
T Consensus       193 -----~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  226 (355)
T d2bbkh_         193 -----DEF-LINHPAYSQKAGRLVWPTYTGKIHQIDLSSG  226 (355)
T ss_dssp             -----TSC-BCSCCEEETTTTEEEEEBTTSEEEEEECTTS
T ss_pred             -----ecc-eeeeccccCCCCeEEEecCCCeEEEEecCCC
Confidence                 111 2445678888899999999999999999884

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.45  E-value=1.1e-12  Score=137.09  Aligned_cols=251  Identities=10%  Similarity=0.070  Sum_probs=144.1

Q ss_pred             cccccchhhhccccccEEeccCCCcEEEEEECCCCCEEEEE----------eCCCcEEEEeCCCCeEEEEecc--c----
Q 004468           28 HSLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISG----------SDDTHINVWSYSSRKLLHSIET--G----   91 (751)
Q Consensus        28 ~~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSg----------s~Dg~I~IWd~~~~~~~~~l~~--~----   91 (751)
                      ..+.+++  ..+.+++.++..+...  .++|||||++|+++          +.|+.|.|||..+++.+..+..  .    
T Consensus        28 ~~v~v~D--~~tg~~~~~~~~g~~~--~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~  103 (355)
T d2bbkh_          28 TQQFVID--GEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFL  103 (355)
T ss_dssp             EEEEEEE--TTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCC
T ss_pred             CeEEEEE--CCCCcEEEEEECCCCC--ceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceee
Confidence            3455544  4566777888776554  79999999988764          3588999999999988877621  1    


Q ss_pred             CCcceEEEEEecCCCCcEEEEEE--CCCcEEEEECCCCCCCCCCCCCCCCceeecc------------------------
Q 004468           92 HSANVFCTKFVPETSDELVVSGA--GDAEVRLFNLSRFSGRGLDDNAITPSALYQC------------------------  145 (751)
Q Consensus        92 h~~~V~~v~fsp~s~~~~l~sgs--~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~------------------------  145 (751)
                      .......++|+|+  +++++.++  .+..+.+|+.....          .+..+..                        
T Consensus       104 ~~~~~~~~~~s~d--g~~~~v~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~  171 (355)
T d2bbkh_         104 VGTYPWMTSLTPD--GKTLLFYQFSPAPAVGVVDLEGKA----------FKRMLDVPDCYHIFPTAPDTFFMHCRDGSLA  171 (355)
T ss_dssp             BSCCGGGEEECTT--SSEEEEEECSSSCEEEEEETTTTE----------EEEEEECCSEEEEEEEETTEEEEEETTSCEE
T ss_pred             cCCCCceEEEecC--CCeeEEecCCCCceeeeeecCCCc----------EeeEEecCCcceEeecCCcceEEEcCCCCEE
Confidence            1233456899999  67766654  56789999998642          1221111                        


Q ss_pred             ---------------------cCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCc
Q 004468          146 ---------------------HTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGA  204 (751)
Q Consensus       146 ---------------------h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~  204 (751)
                                           +...+....+.+ ++..++.++.++.+++|++..+...             +++...+.
T Consensus       172 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~-------------~~~~~~~~  237 (355)
T d2bbkh_         172 KVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQ-KAGRLVWPTYTGKIHQIDLSSGDAK-------------FLPAVEAL  237 (355)
T ss_dssp             EEECCSSSCCEEEECCCCSCTTSCBCSCCEEET-TTTEEEEEBTTSEEEEEECTTSSCE-------------ECCCEESS
T ss_pred             EEEecCCCeEEEEecccccceecceeeeccccC-CCCeEEEecCCCeEEEEecCCCcEE-------------EEeccCCc
Confidence                                 111222233333 2233444445555555554443210             00000000


Q ss_pred             eecccCCCCCccceEEEEEeCCCCcEEEEEeCC----------CeEEEEeCCCCCCccccCCCCCCCCcccccccccccc
Q 004468          205 KRSLADPPKQTLSLKSCDISSTRPHLLLVGGSD----------AFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSE  274 (751)
Q Consensus       205 ~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D----------~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (751)
                      ................++++|+ +..+++...+          ..|.+||..+.+.+..+.                   
T Consensus       238 ~~~~~~~~~~p~~~~~~~~~~d-~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~-------------------  297 (355)
T d2bbkh_         238 TEAERADGWRPGGWQQVAYHRA-LDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFE-------------------  297 (355)
T ss_dssp             CHHHHHTTEEECSSSCEEEETT-TTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEE-------------------
T ss_pred             ccceEeeeeeccceEEEEEeCC-CCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEec-------------------
Confidence            0000000001112345788885 5555554433          479999998876443221                   


Q ss_pred             CCccccceEEEEEcCCCCE--EEEEeCCCcEEEEECCCCCcceeeeecCCCceeEEeCC
Q 004468          275 HGRSSLHLTHVTFSPNGEE--VLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTP  331 (751)
Q Consensus       275 ~g~~~~~vt~v~fspdg~~--Ll~~s~d~~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp  331 (751)
                        + ...+.+++|+|||+.  +++++.|+.|++||+.+++........+..+..+.+.+
T Consensus       298 --~-~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~~G~~p~~i~~~d  353 (355)
T d2bbkh_         298 --M-GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTAD  353 (355)
T ss_dssp             --E-EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCSSCCEEECCC
T ss_pred             --C-CCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEEeCcCCCccEEEeCC
Confidence              0 114789999999984  34556699999999999765554444555555555443

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.44  E-value=5.8e-12  Score=129.93  Aligned_cols=273  Identities=8%  Similarity=0.027  Sum_probs=168.1

Q ss_pred             ccccccchhhh-ccccccEEeccCCCcEEEEEECCCCCEEE-EEeCCCcEEEEeCCCCeEEEEe--cccCCcceEEEEEe
Q 004468           27 NHSLQMHSSLV-RRLSQERELEGHQGCVNAISWNSKGSLLI-SGSDDTHINVWSYSSRKLLHSI--ETGHSANVFCTKFV  102 (751)
Q Consensus        27 ~~~l~~~~~~i-~~~~~~~~L~gH~~~V~~l~~s~dg~~La-Sgs~Dg~I~IWd~~~~~~~~~l--~~~h~~~V~~v~fs  102 (751)
                      ++++++|+-.- ..+++++++ .|.+.|..|+|+|||++|+ ++..|+.|.+|++........+  ...+...+..++|+
T Consensus        13 ~~~I~v~~~~~~~~l~~~~~~-~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~s   91 (333)
T d1ri6a_          13 SQQIHVWNLNHEGALTLTQVV-DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTD   91 (333)
T ss_dssp             GTEEEEEEECTTSCEEEEEEE-ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEEC
T ss_pred             CCcEEEEEEcCCCCeEEEEEE-cCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEc
Confidence            45667775322 223444444 4889999999999999885 4556899999998755322222  12355667889999


Q ss_pred             cCCCCcEEEEEEC-CCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCC
Q 004468          103 PETSDELVVSGAG-DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGS  181 (751)
Q Consensus       103 p~s~~~~l~sgs~-Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~  181 (751)
                      |+  |++|++++. ++.|.+|+......        ........+...+.++.++|++..+++....+..|.+|+.....
T Consensus        92 pD--g~~l~v~~~~~~~v~~~~~~~~~~--------~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~  161 (333)
T d1ri6a_          92 HQ--GQFVFVGSYNAGNVSVTRLEDGLP--------VGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDG  161 (333)
T ss_dssp             TT--SSEEEEEETTTTEEEEEEEETTEE--------EEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTS
T ss_pred             CC--CCEEeecccCCCceeeeccccccc--------eecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCC
Confidence            99  788888774 77899998875321        11333445677788999999554344444466789999987654


Q ss_pred             CCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCC
Q 004468          182 SCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPP  261 (751)
Q Consensus       182 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~  261 (751)
                      ..          .......       .  ..........++|++++...+.+....+...+|+..........       
T Consensus       162 ~~----------~~~~~~~-------~--~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-------  215 (333)
T d1ri6a_         162 HL----------VAQDPAE-------V--TTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIEC-------  215 (333)
T ss_dssp             CE----------EEEEEEE-------E--ECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEE-------
T ss_pred             cc----------eeeecee-------e--eeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceee-------
Confidence            21          0000000       0  00122345789999965445555667778888887543311100       


Q ss_pred             CccccccccccccCCccccceEEEEEcCCCCEEEEEe-CCCcEEEEECCCCCcceeee---ecCCCceeEEeCCCCCCcc
Q 004468          262 PCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSY-SGEHVYLMDVNHAGGRAMRY---TVGDASKIMSFTPTLNGLE  337 (751)
Q Consensus       262 ~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s-~d~~I~lwdl~~~~~~~~~~---~~~~~~~~~~~sp~~~~~~  337 (751)
                        .......  ............++++++++++++.. .++.+.+|++..........   ..+..+..++|+|+.+.+.
T Consensus       216 --~~~~~~~--~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~  291 (333)
T d1ri6a_         216 --VQTLDMM--PENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLI  291 (333)
T ss_dssp             --EEEEECS--CTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEE
T ss_pred             --eeeeeee--ecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEE
Confidence              0000000  00001112467889999999877665 47899999988755333322   2345677899999988765


Q ss_pred             cCC
Q 004468          338 LQP  340 (751)
Q Consensus       338 ~~~  340 (751)
                      ...
T Consensus       292 va~  294 (333)
T d1ri6a_         292 AAG  294 (333)
T ss_dssp             EEC
T ss_pred             EEE
Confidence            543

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.23  E-value=1.9e-10  Score=121.13  Aligned_cols=244  Identities=9%  Similarity=-0.005  Sum_probs=146.9

Q ss_pred             ccccchhhhccccccEEeccCCCcEEEEEECCCCCEEEEEe----------CCCcEEEEeCCCCeEEEEecccCC-----
Q 004468           29 SLQMHSSLVRRLSQERELEGHQGCVNAISWNSKGSLLISGS----------DDTHINVWSYSSRKLLHSIETGHS-----   93 (751)
Q Consensus        29 ~l~~~~~~i~~~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs----------~Dg~I~IWd~~~~~~~~~l~~~h~-----   93 (751)
                      ..++|.......+++.++.++...  .++|+|||+.|+.++          .|++|.+||..+++.+..+ ..+.     
T Consensus        45 ~~~~~~~d~~~~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i-~~p~~~~~~  121 (368)
T d1mdah_          45 TTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADI-ELPDAPRFS  121 (368)
T ss_dssp             SEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEE-EETTSCSCC
T ss_pred             cceEEEEeCCCCcEEEEEeCCCCC--cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeee-cCCccceec
Confidence            334444445666777777777655  589999999888764          4778999999999988877 2222     


Q ss_pred             --cceEEEEEecCCCCcEEEEEE-CCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCC
Q 004468           94 --ANVFCTKFVPETSDELVVSGA-GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG  170 (751)
Q Consensus        94 --~~V~~v~fsp~s~~~~l~sgs-~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg  170 (751)
                        .....++|+|+  |++|+.+. .++.|.+||+.+.          +.+..+..+....    +.|.+...++..+.||
T Consensus       122 ~g~~p~~~a~SpD--Gk~l~va~~~~~~v~~~d~~~~----------~~~~~~~~~~~~~----~~~~~~~~~v~~~~Dg  185 (368)
T d1mdah_         122 VGPRVHIIGNCAS--SACLLFFLFGSSAAAGLSVPGA----------SDDQLTKSASCFH----IHPGAAATHYLGSCPA  185 (368)
T ss_dssp             BSCCTTSEEECTT--SSCEEEEECSSSCEEEEEETTT----------EEEEEEECSSCCC----CEEEETTEEECCCCTT
T ss_pred             ccCCccceEECCC--CCEEEEEeCCCCeEEEEECCCC----------cEeEEeeccCcce----EccCCCceEEEEcCCC
Confidence              23456899999  78777665 5799999999864          3344444443322    2233456777788888


Q ss_pred             cEEEEecCCCCCCCCC------CCC---------C--------CccceEEEecccCceecccCCCC----------Cccc
Q 004468          171 TLRQHDFRQGSSCPPA------GSS---------H--------QECRNILLDLRCGAKRSLADPPK----------QTLS  217 (751)
Q Consensus       171 ~I~iwDlr~~~~~~~~------~~~---------~--------~~~~~~l~~~~~~~~~~~~~~~~----------~~~~  217 (751)
                      ++..+++.........      ...         .        ......+++...+....+.....          ....
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  265 (368)
T d1mdah_         186 SLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAG  265 (368)
T ss_dssp             SCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECS
T ss_pred             CEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEecCCCEEEEeecCCceEEEeecccccceeeeeeecCCC
Confidence            8888887654432100      000         0        00011122222222111111111          0111


Q ss_pred             eEEEEEeCCCCcEEEEEeCC--------CeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcC
Q 004468          218 LKSCDISSTRPHLLLVGGSD--------AFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP  289 (751)
Q Consensus       218 v~~i~~sp~~~~~l~sgs~D--------~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fsp  289 (751)
                      ...++++|+...++++...+        ..|.+||..+++.+..+.                     . ...+.+++|+|
T Consensus       266 ~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~---------------------~-~~~~~~~a~sp  323 (368)
T d1mdah_         266 FQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPIS---------------------N-GHDSDAIIAAQ  323 (368)
T ss_dssp             SSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCE---------------------E-EEEECEEEECC
T ss_pred             ceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEec---------------------C-CCceeEEEECC
Confidence            23578888644444433222        358899998876543321                     0 11478899999


Q ss_pred             CCCE-E-EEEeCCCcEEEEECCCCCc
Q 004468          290 NGEE-V-LLSYSGEHVYLMDVNHAGG  313 (751)
Q Consensus       290 dg~~-L-l~~s~d~~I~lwdl~~~~~  313 (751)
                      ||+. | +++..++.|++||..+++.
T Consensus       324 DG~~~ly~s~~~~~~v~v~D~~tgk~  349 (368)
T d1mdah_         324 DGASDNYANSAGTEVLDIYDAASDQD  349 (368)
T ss_dssp             SSSCEEEEEETTTTEEEEEESSSCEE
T ss_pred             CCCEEEEEEeCCCCeEEEEECCCCCE
Confidence            9974 4 4556689999999999653

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.03  E-value=1e-08  Score=111.36  Aligned_cols=126  Identities=10%  Similarity=0.104  Sum_probs=88.1

Q ss_pred             EeccCCCcEEEEEECCCCCEEEEEeC---------CCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEEC
Q 004468           45 ELEGHQGCVNAISWNSKGSLLISGSD---------DTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAG  115 (751)
Q Consensus        45 ~L~gH~~~V~~l~~s~dg~~LaSgs~---------Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~  115 (751)
                      +|..|...|.++.|||||++||.++.         ++.+.|||+.+++. ..+ ..|...+..+.|+|+  |+.||.. .
T Consensus        56 ~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~-~~l-~~~~~~~~~~~~SPD--G~~ia~~-~  130 (470)
T d2bgra1          56 TFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQL-ITE-ERIPNNTQWVTWSPV--GHKLAYV-W  130 (470)
T ss_dssp             TTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEE-CCS-SCCCTTEEEEEECSS--TTCEEEE-E
T ss_pred             hhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCcc-ccc-ccCCccccccccccC--cceeeEe-e
Confidence            45667788999999999999998854         56788999998764 445 788999999999999  8888885 5


Q ss_pred             CCcEEEEECCCCCCCCCCCCCCCCceeecc---------cCCceeEEEEecCCCCEEEEEeCCCc-EEEEec
Q 004468          116 DAEVRLFNLSRFSGRGLDDNAITPSALYQC---------HTRRVKKLAVEVGNPHVVWSASEDGT-LRQHDF  177 (751)
Q Consensus       116 Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~---------h~~~V~~l~~sp~~~~~l~s~s~Dg~-I~iwDl  177 (751)
                      ++.+.+|+...+......... ..-..+.+         ..+....+.|+| +++.|+....|.+ +..|.+
T Consensus       131 ~~~l~~~~~~~g~~~~~t~~~-~~~~~~~g~~d~~~~~~~~~~~~~~~wSP-DGk~ia~~~~d~~~v~~~~~  200 (470)
T d2bgra1         131 NNDIYVKIEPNLPSYRITWTG-KEDIIYNGITDWVYEEEVFSAYSALWWSP-NGTFLAYAQFNDTEVPLIEY  200 (470)
T ss_dssp             TTEEEEESSTTSCCEECCSCC-BTTTEEESBCCHHHHHHTSSSSBCEEECT-TSSEEEEEEEECTTCCEEEE
T ss_pred             cccceEEECCCCceeeeeecc-CCCcccccccceeeeeeecCCccccEECC-CCCccceeEecCCcCceEEE
Confidence            688999998865322110000 00011111         234456788999 6677777776544 655554

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.99  E-value=1.5e-09  Score=113.99  Aligned_cols=202  Identities=10%  Similarity=-0.029  Sum_probs=120.8

Q ss_pred             cCCCcEEEEEECCCCCEE--E-EEeCCCc--EEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEE--------
Q 004468           48 GHQGCVNAISWNSKGSLL--I-SGSDDTH--INVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGA--------  114 (751)
Q Consensus        48 gH~~~V~~l~~s~dg~~L--a-Sgs~Dg~--I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs--------  114 (751)
                      .+.+....++..++++..  + ++..++.  |.+||..+++.+..+ .++..+  .++|+|+  |+.|+..+        
T Consensus        17 ~~~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~-~~~~~~--~~a~spD--g~~i~~~~~~~~~~~~   91 (368)
T d1mdah_          17 ASDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHS-LGAFLS--LAVAGHS--GSDFALASTSFARSAK   91 (368)
T ss_dssp             CCCCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEE-EECTTC--EEEECTT--SSCEEEEEEEETTTTS
T ss_pred             ccCCCccccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEE-eCCCCC--cceECCC--CCEEEEEcccCccccc
Confidence            355666667778888853  2 2344454  666799999998888 455443  5899999  78777654        


Q ss_pred             --CCCcEEEEECCCCCCCCCCCCCCCCceeecccC-------CceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCC
Q 004468          115 --GDAEVRLFNLSRFSGRGLDDNAITPSALYQCHT-------RRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPP  185 (751)
Q Consensus       115 --~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~-------~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~  185 (751)
                        .|++|.+||..+.          +++..+..+.       .....++|+|++..++++...++.+.+||+.+++... 
T Consensus        92 g~~d~~v~v~D~~t~----------~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~-  160 (368)
T d1mdah_          92 GKRTDYVEVFDPVTF----------LPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQ-  160 (368)
T ss_dssp             SSEEEEEEEECTTTC----------CEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEE-
T ss_pred             cccCCeEEEEECCCC----------cEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeE-
Confidence              4788999999864          3344433222       2234689999665555555578999999998875220 


Q ss_pred             CCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccc
Q 004468          186 AGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVN  265 (751)
Q Consensus       186 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~  265 (751)
                                 ....             ..    +..+.|.+...++..+.|+.+.+|+.............       .
T Consensus       161 -----------~~~~-------------~~----~~~~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~-------~  205 (368)
T d1mdah_         161 -----------LTKS-------------AS----CFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGA-------Q  205 (368)
T ss_dssp             -----------EEEC-------------SS----CCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCC-------C
T ss_pred             -----------Eeec-------------cC----cceEccCCCceEEEEcCCCCEEEEEecCCceeeeeeec-------c
Confidence                       0000             00    00122223456777778888888887654322111000       0


Q ss_pred             cccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004468          266 YFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (751)
Q Consensus       266 ~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~  310 (751)
                      .+       ..+ ...+..+.+.+++..+.+  .++.++++++..
T Consensus       206 ~~-------~~~-~~~~~~~~~~~~g~~~~~--~~~~v~~~~~~~  240 (368)
T d1mdah_         206 CT-------GAQ-NCSSQAAQANYPGMLVWA--VASSILQGDIPA  240 (368)
T ss_dssp             SC-------TTS-CBCSCCEEETTTTEEEEC--BSSCCEEEECCS
T ss_pred             cc-------ccc-ccceeecccccCcEEEEe--cCCCEEEEeecC
Confidence            00       011 113456788888865554  356677777766

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.98  E-value=3.2e-08  Score=107.38  Aligned_cols=166  Identities=9%  Similarity=0.027  Sum_probs=109.9

Q ss_pred             EEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEec----ccCCcceEEEEEecCCCCcEEEEEEC---------CCcEEE
Q 004468           55 AISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIE----TGHSANVFCTKFVPETSDELVVSGAG---------DAEVRL  121 (751)
Q Consensus        55 ~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~----~~h~~~V~~v~fsp~s~~~~l~sgs~---------Dg~V~v  121 (751)
                      .+.|.++++++..  .|+.|.+||+.+++....+.    ..|...|.++.|+|+  +++|+.++.         ++.+.|
T Consensus        21 ~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpD--g~~i~~~~~~~~~~r~s~~~~~~l   96 (470)
T d2bgra1          21 SLRWISDHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPD--GQFILLEYNYVKQWRHSYTASYDI   96 (470)
T ss_dssp             CCEECSSSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTT--SSEEEEEEEEEECSSSCEEEEEEE
T ss_pred             CCEeCCCCEEEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCC--CCEEEEEECCcceeeeccCceEEE
Confidence            4789999987764  57889999999998765441    345678999999999  899888753         567899


Q ss_pred             EECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecc
Q 004468          122 FNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLR  201 (751)
Q Consensus       122 wd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~  201 (751)
                      ||+.++           .+..+..|...+..+.|+| +++.++.. .++.+.+|++.++...........   ...++..
T Consensus        97 ~d~~~~-----------~~~~l~~~~~~~~~~~~SP-DG~~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~---~~~~~g~  160 (470)
T d2bgra1          97 YDLNKR-----------QLITEERIPNNTQWVTWSP-VGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKE---DIIYNGI  160 (470)
T ss_dssp             EETTTT-----------EECCSSCCCTTEEEEEECS-STTCEEEE-ETTEEEEESSTTSCCEECCSCCBT---TTEEESB
T ss_pred             EECCCC-----------cccccccCCcccccccccc-CcceeeEe-ecccceEEECCCCceeeeeeccCC---Ccccccc
Confidence            999964           2556777889999999999 56777664 567899999988764322211110   1111111


Q ss_pred             cCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCe-EEEEeC
Q 004468          202 CGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAF-ARLYDR  245 (751)
Q Consensus       202 ~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~-IriwD~  245 (751)
                      ......    .........+.|+|+ +++|+....|.. |+.|.+
T Consensus       161 ~d~~~~----~~~~~~~~~~~wSPD-Gk~ia~~~~d~~~v~~~~~  200 (470)
T d2bgra1         161 TDWVYE----EEVFSAYSALWWSPN-GTFLAYAQFNDTEVPLIEY  200 (470)
T ss_dssp             CCHHHH----HHTSSSSBCEEECTT-SSEEEEEEEECTTCCEEEE
T ss_pred             cceeee----eeecCCccccEECCC-CCccceeEecCCcCceEEE
Confidence            000000    001123456789995 788888765533 555544

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=98.92  E-value=2.8e-08  Score=105.20  Aligned_cols=97  Identities=11%  Similarity=0.099  Sum_probs=67.5

Q ss_pred             EEEEEeCCCcEEEEeCCCCeEEEEecc-----------------------------cCCcceEEEEEecCCCCcEEE-EE
Q 004468           64 LLISGSDDTHINVWSYSSRKLLHSIET-----------------------------GHSANVFCTKFVPETSDELVV-SG  113 (751)
Q Consensus        64 ~LaSgs~Dg~I~IWd~~~~~~~~~l~~-----------------------------~h~~~V~~v~fsp~s~~~~l~-sg  113 (751)
                      .++||+.+|.|+||++.+++.+..+..                             .|.-.+....+.|+  |++|+ +.
T Consensus        13 ~f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpD--Gr~lfV~d   90 (441)
T d1qnia2          13 GFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYD--GKYLFIND   90 (441)
T ss_dssp             EEEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEE--EEEEEEEE
T ss_pred             EEEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCC--CCEEEEEc
Confidence            367889999999999999988887621                             13345666777898  78775 45


Q ss_pred             ECCCcEEEEECCCCCCCCCCCCCCCCceeec-ccCCceeEEEEecCCCCEEEEEeCCCcE
Q 004468          114 AGDAEVRLFNLSRFSGRGLDDNAITPSALYQ-CHTRRVKKLAVEVGNPHVVWSASEDGTL  172 (751)
Q Consensus       114 s~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~l~~sp~~~~~l~s~s~Dg~I  172 (751)
                      ..+..|.++|+.+.          ++...+. .+...+..++|+|++...++.+..+..+
T Consensus        91 ~~~~rVavIDl~t~----------k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v  140 (441)
T d1qnia2          91 KANTRVARIRLDIM----------KTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVI  140 (441)
T ss_dssp             TTTTEEEEEETTTT----------EEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCE
T ss_pred             CCCCEEEEEECCCC----------cEeeEEecCCCCCccceEEeccCCEEEEEeccCCcc
Confidence            57889999999975          3344333 3567789999999554434444433333

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.77  E-value=7.9e-07  Score=90.13  Aligned_cols=249  Identities=9%  Similarity=0.025  Sum_probs=156.5

Q ss_pred             ccccEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcE
Q 004468           40 LSQERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEV  119 (751)
Q Consensus        40 ~~~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V  119 (751)
                      .+.++.+...+ .+..++++|||+++++...+++|..|+......  .+ ......+.+++|.|+  |+++++...++.+
T Consensus        18 ~~v~~~~p~~~-~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~~~--~~-~~~~~~~~gla~~~d--G~l~v~~~~~~~~   91 (302)
T d2p4oa1          18 AKIITSFPVNT-FLENLASAPDGTIFVTNHEVGEIVSITPDGNQQ--IH-ATVEGKVSGLAFTSN--GDLVATGWNADSI   91 (302)
T ss_dssp             EEEEEEECTTC-CEEEEEECTTSCEEEEETTTTEEEEECTTCCEE--EE-EECSSEEEEEEECTT--SCEEEEEECTTSC
T ss_pred             ccEEEECCCCC-CcCCEEECCCCCEEEEeCCCCEEEEEeCCCCEE--EE-EcCCCCcceEEEcCC--CCeEEEecCCceE
Confidence            34555554322 578999999999999999999999999764322  23 345678999999999  8899999889999


Q ss_pred             EEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEe
Q 004468          120 RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLD  199 (751)
Q Consensus       120 ~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~  199 (751)
                      .+|+.....+..      ..+. ..........+++.+ +++++++.+.++.+..+|...+...           ..+.+
T Consensus        92 ~~~~~~~~~~~~------~~~~-~~~~~~~~n~i~~~~-~g~~~v~~~~~~~i~~~~~~~~~~~-----------~~~~~  152 (302)
T d2p4oa1          92 PVVSLVKSDGTV------ETLL-TLPDAIFLNGITPLS-DTQYLTADSYRGAIWLIDVVQPSGS-----------IWLEH  152 (302)
T ss_dssp             EEEEEECTTSCE------EEEE-ECTTCSCEEEEEESS-SSEEEEEETTTTEEEEEETTTTEEE-----------EEEEC
T ss_pred             EEEEecccccce------eecc-ccCCccccceeEEcc-CCCEEeeccccccceeeeccCCcce-----------eEecC
Confidence            888876533211      1111 122445678999998 6788888888899988888765311           11111


Q ss_pred             cccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccc
Q 004468          200 LRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSS  279 (751)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  279 (751)
                      .. .   ..............+.+..  ..++++....+.|..++..........          ..+.     .    .
T Consensus       153 ~~-~---~~~~~~~~~~~~ngi~~~~--~~l~~~~~~~~~i~~~~~~~~~~~~~~----------~~~~-----~----~  207 (302)
T d2p4oa1         153 PM-L---ARSNSESVFPAANGLKRFG--NFLYVSNTEKMLLLRIPVDSTDKPGEP----------EIFV-----E----Q  207 (302)
T ss_dssp             GG-G---SCSSTTCCSCSEEEEEEET--TEEEEEETTTTEEEEEEBCTTSCBCCC----------EEEE-----E----S
T ss_pred             Cc-c---ceeeccCcccccccccccC--CceeeecCCCCeEEecccccccccccc----------cccc-----C----C
Confidence            00 0   0111112223455666664  467778888899998887654321110          0000     0    0


Q ss_pred             cceEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcceeeee--cCCCceeEEe---CCCCCCcccC
Q 004468          280 LHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYT--VGDASKIMSF---TPTLNGLELQ  339 (751)
Q Consensus       280 ~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~~~~--~~~~~~~~~~---sp~~~~~~~~  339 (751)
                      .....++|+++|+.+++...++.|..|+.... .......  ....+..++|   +|+.+.+.+.
T Consensus       208 ~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~-~~~~~~~~~~~~~pt~vafg~~~~D~~~Lyvt  271 (302)
T d2p4oa1         208 TNIDDFAFDVEGNLYGATHIYNSVVRIAPDRS-TTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVV  271 (302)
T ss_dssp             CCCSSEEEBTTCCEEEECBTTCCEEEECTTCC-EEEEECGGGTCTTEEEEEECCSTTTTTEEEEE
T ss_pred             CCCcceEECCCCCEEEEEcCCCcEEEECCCCC-EEEEEecCCCCCCceEEEEcCCCCCCCEEEEE
Confidence            12456999999998888888999999987652 1112111  1223567788   4555555443

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.70  E-value=3e-06  Score=83.49  Aligned_cols=229  Identities=11%  Similarity=0.142  Sum_probs=129.7

Q ss_pred             ccEEeccCCCcEEEEEECCCCCEEEEEeCCC---cEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEE-CCC
Q 004468           42 QERELEGHQGCVNAISWNSKGSLLISGSDDT---HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGA-GDA  117 (751)
Q Consensus        42 ~~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg---~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs-~Dg  117 (751)
                      -.+.|..+...+..-+|||||+.||-.....   .+.+.+...+... .+ ..+.+.+....|+|+  |..++..+ .++
T Consensus        30 ~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~spd--g~~i~~~~~~~~  105 (269)
T d2hqsa1          30 NQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QV-ASFPRHNGAPAFSPD--GSKLAFALSKTG  105 (269)
T ss_dssp             SCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EE-ECCSSCEEEEEECTT--SSEEEEEECTTS
T ss_pred             CcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCcee-EE-eeeecccccceecCC--CCeeeEeeecCC
Confidence            4445555677888999999999999665433   3666666655443 33 467888999999999  67666544 344


Q ss_pred             cEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEe--cCCCCCCCCCCCCCCccce
Q 004468          118 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHD--FRQGSSCPPAGSSHQECRN  195 (751)
Q Consensus       118 ~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwD--lr~~~~~~~~~~~~~~~~~  195 (751)
                      ...++......         .................++++....+++...+|...+|.  +......            
T Consensus       106 ~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~------------  164 (269)
T d2hqsa1         106 SLNLYVMDLAS---------GQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ------------  164 (269)
T ss_dssp             SCEEEEEETTT---------CCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCE------------
T ss_pred             ccceeeccccc---------ccceeeeeccccccccccccccccceecccccCCceEeeeecccccce------------
Confidence            43333333211         112222234444455567775555666666676555544  3333210            


Q ss_pred             EEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEE-eCCCeEEEEeCCCCCCccccCCCCCCCCcccccccccccc
Q 004468          196 ILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVG-GSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSE  274 (751)
Q Consensus       196 ~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sg-s~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (751)
                                 .+   ...........|+|+ +..++.. ...+...+|........            .+..       
T Consensus       165 -----------~~---~~~~~~~~~~~~spd-g~~~~~~~~~~~~~~i~~~~~~~~~------------~~~~-------  210 (269)
T d2hqsa1         165 -----------RI---TWEGSQNQDADVSSD-GKFMVMVSSNGGQQHIAKQDLATGG------------VQVL-------  210 (269)
T ss_dssp             -----------EC---CCSSSEEEEEEECTT-SSEEEEEEECSSCEEEEEEETTTCC------------EEEC-------
T ss_pred             -----------ee---ecccccccccccccc-cceeEEEeecCCceeeeEeeccccc------------ceEe-------
Confidence                       00   012345566789996 4555544 44444444443322110            0000       


Q ss_pred             CCccccceEEEEEcCCCCEEEEEeC---CCcEEEEECCCCCcceeeeecCCCceeEEeCCC
Q 004468          275 HGRSSLHLTHVTFSPNGEEVLLSYS---GEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPT  332 (751)
Q Consensus       275 ~g~~~~~vt~v~fspdg~~Ll~~s~---d~~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp~  332 (751)
                        ..........|||||++|+-.+.   ...|++++++.+. ..............+|+|-
T Consensus       211 --~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~-~~~lt~~~g~~~~p~WSP~  268 (269)
T d2hqsa1         211 --SSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRF-KARLPATDGQVKFPAWSPY  268 (269)
T ss_dssp             --CCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCC-EEECCCSSSEEEEEEECCC
T ss_pred             --ecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCC-EEEEeCCCCcEEeEEeCCC
Confidence              00113567889999999875554   4579999998854 3333333444556778873

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=98.48  E-value=5.4e-07  Score=95.19  Aligned_cols=236  Identities=8%  Similarity=-0.005  Sum_probs=136.0

Q ss_pred             ccCCCcEEEEEECCCCCEEEEE-eCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCc--EEEEEECCCcE----
Q 004468           47 EGHQGCVNAISWNSKGSLLISG-SDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDE--LVVSGAGDAEV----  119 (751)
Q Consensus        47 ~gH~~~V~~l~~s~dg~~LaSg-s~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~--~l~sgs~Dg~V----  119 (751)
                      ..|...+....++|||++|... ..+.+|.+||+.+++....+...+...+..++|+|+  ++  +++..+. ..+    
T Consensus        68 d~hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spd--g~t~YV~~~~~-~~v~~~~  144 (441)
T d1qnia2          68 DCHHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKV--PKTNYVFCNAE-FVIPQPN  144 (441)
T ss_dssp             CBCCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCS--SBCCEEEEEEC-SCEESSC
T ss_pred             cccCCCcceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEecc--CCEEEEEeccC-CcccccC
Confidence            4466677777788999988554 578899999999999887775567888999999999  55  4444443 333    


Q ss_pred             --------------EEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCC-CcEEEEecCCCCCCC
Q 004468          120 --------------RLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED-GTLRQHDFRQGSSCP  184 (751)
Q Consensus       120 --------------~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~D-g~I~iwDlr~~~~~~  184 (751)
                                    ..+|..+.          +....+.. ...+..++|+|++ .++++++.+ ..+..++..+.....
T Consensus       145 dg~~~~~~~~~~~~~~iD~~t~----------~v~~qI~v-~~~p~~v~~spdG-k~a~vt~~nse~~~~id~~t~~~~d  212 (441)
T d1qnia2         145 DGTDFSLDNSYTMFTAIDAETM----------DVAWQVIV-DGNLDNTDADYTG-KYATSTCYNSERAVDLAGTMRNDRD  212 (441)
T ss_dssp             SSSCCCGGGEEEEEEEEETTTC----------SEEEEEEE-SSCCCCEEECSSS-SEEEEEESCTTCCSSHHHHTCSSBC
T ss_pred             cccccccccccceEEeecCccc----------eeeEEEec-CCCccceEECCCC-CEEEEEecCCCceEEEeccCcceEE
Confidence                          33555542          22233322 3457789999955 554444433 344344443332110


Q ss_pred             -----------------CCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCC
Q 004468          185 -----------------PAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRM  247 (751)
Q Consensus       185 -----------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~  247 (751)
                                       ...........++.........  ...+.. .....+.++|++..+++++..+++|.+||+.+
T Consensus       213 ~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~--~~IPvg-ksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k  289 (441)
T d1qnia2         213 WVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESEFT--RYIPVP-KNPHGLNTSPDGKYFIANGKLSPTVSVIAIDK  289 (441)
T ss_dssp             EEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCSSE--EEECCB-SSCCCEEECTTSCEEEEECTTSSBEEEEEGGG
T ss_pred             EEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCCceE--EEEeCC-CCccCceECCCCCEEEEeCCcCCcEEEEEeeh
Confidence                             0000001112223322221111  111111 23467899996544566778899999999976


Q ss_pred             CCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004468          248 LPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (751)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~  310 (751)
                      ....  +.....+..++....        .........+|+++|..+.+...|.+|..|++..
T Consensus       290 ~~~~--~~~~~~~~~~~~~~~--------~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~~  342 (441)
T d1qnia2         290 LDDL--FEDKIELRDTIVAEP--------ELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIAD  342 (441)
T ss_dssp             HHHH--TTTSSCGGGGEEECC--------BCCSCEEEEEECSSSEEEEEETTTTEEEEEEHHH
T ss_pred             hhhH--hhccCCcceEEEeec--------ccccCcccceecCCceEEEcccccceEEEeccch
Confidence            4321  111111111111110        1112356678999998888888899999999865

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.42  E-value=1.8e-05  Score=77.80  Aligned_cols=220  Identities=7%  Similarity=-0.015  Sum_probs=131.7

Q ss_pred             cEEEEEECCCCCEEEEE-eCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCC
Q 004468           52 CVNAISWNSKGSLLISG-SDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGR  130 (751)
Q Consensus        52 ~V~~l~~s~dg~~LaSg-s~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~  130 (751)
                      .-..|+++++|++.++. +..+.|..++.......... .+-......+++.++  +.++++....+.|++++-...   
T Consensus        15 ~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~p~gvav~~~--g~i~v~d~~~~~i~~~~~~~~---   88 (260)
T d1rwia_          15 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLP-FNGLYQPQGLAVDGA--GTVYVTDFNNRVVTLAAGSNN---   88 (260)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECC-CCSCCSCCCEEECTT--CCEEEEETTTEEEEECTTCSC---
T ss_pred             CCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEec-cCCccCceEEEEcCC--CCEEEeeeeeceeeeeeeccc---
Confidence            35799999999976655 45577777776543332222 222234678899988  788887777666766554422   


Q ss_pred             CCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccC
Q 004468          131 GLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLAD  210 (751)
Q Consensus       131 ~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  210 (751)
                             ..+... ........|++.+ +++++++-.....+..++.......             ..            
T Consensus        89 -------~~~~~~-~~~~~p~~iavd~-~g~i~v~d~~~~~~~~~~~~~~~~~-------------~~------------  134 (260)
T d1rwia_          89 -------QTVLPF-DGLNYPEGLAVDT-QGAVYVADRGNNRVVKLAAGSKTQT-------------VL------------  134 (260)
T ss_dssp             -------CEECCC-CSCCSEEEEEECT-TCCEEEEEGGGTEEEEECTTCSSCE-------------EC------------
T ss_pred             -------eeeeee-eeeeecccccccc-cceeEeeccccccccccccccceee-------------ee------------
Confidence                   111111 1234568899988 5677777666666777765543211             00            


Q ss_pred             CCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCC
Q 004468          211 PPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPN  290 (751)
Q Consensus       211 ~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspd  290 (751)
                      ..........++++|+ ++++++...++.|..+|........              +...      ... ....|+++++
T Consensus       135 ~~~~~~~p~~i~~~~~-g~~~v~~~~~~~i~~~d~~~~~~~~--------------~~~~------~~~-~p~gi~~d~~  192 (260)
T d1rwia_         135 PFTGLNDPDGVAVDNS-GNVYVTDTDNNRVVKLEAESNNQVV--------------LPFT------DIT-APWGIAVDEA  192 (260)
T ss_dssp             CCCSCCSCCEEEECTT-CCEEEEEGGGTEEEEECTTTCCEEE--------------CCCS------SCC-SEEEEEECTT
T ss_pred             eecccCCcceeeecCC-CCEeeeccccccccccccccceeee--------------eecc------ccC-CCccceeeee
Confidence            0011224467899994 6788888888999999876432110              0000      111 3688999999


Q ss_pred             CCEEEEEeCCCcEEEEECCCCCcceeeeecCCCceeEEeCCCC
Q 004468          291 GEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTL  333 (751)
Q Consensus       291 g~~Ll~~s~d~~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp~~  333 (751)
                      |+.+++....+.|+.++.............-..+..+++.++.
T Consensus       193 g~l~vsd~~~~~i~~~~~~~~~~~~~~~~~~~~P~~i~~d~~g  235 (260)
T d1rwia_         193 GTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDR  235 (260)
T ss_dssp             CCEEEEETTTTEEEEECTTCSCCEECCCCSCCCEEEEEECTTC
T ss_pred             eeeeeeecCCCEEEEEeCCCCeEEEEccCCCCCeEEEEEeCCC
Confidence            9988888888999999876643222111112345567777654

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.35  E-value=1.7e-06  Score=74.07  Aligned_cols=114  Identities=19%  Similarity=0.168  Sum_probs=98.9

Q ss_pred             chhHHHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCC
Q 004468          361 GKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSS  440 (751)
Q Consensus       361 ~~~~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~  440 (751)
                      +++..|...|+..+..|. |..|+..|..+|...+..      ..+|.++|.++.+.   ++.-.|+.++..++.++|.+
T Consensus         1 ~~~~~l~~~g~~~~~~g~-~~eAi~~~~~al~~~p~~------~~~~~~~a~~~~~~---~~~~~A~~~~~~al~~~p~~   70 (117)
T d1elwa_           1 EQVNELKEKGNKALSVGN-IDDALQCYSEAIKLDPHN------HVLYSNRSAAYAKK---GDYQKAYEDGCKTVDLKPDW   70 (117)
T ss_dssp             CHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHH---TCHHHHHHHHHHHHHHCTTC
T ss_pred             CHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCcc------hhhhhccccccccc---ccccccchhhhhHHHhccch
Confidence            356788899999999999 999999999999877665      45889999999875   44667999999999999999


Q ss_pred             cchHHHHHHHHHHhcchHHHHHHHHHhcccCCCChhhhHHHHHH
Q 004468          441 FRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENI  484 (751)
Q Consensus       441 ~~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~~~~~~~~~~  484 (751)
                      +.++++++.++..++++.+|+.+++......|........+..+
T Consensus        71 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~l  114 (117)
T d1elwa_          71 GKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM  114 (117)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            99999999999999999999999999999999877655444433

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.31  E-value=4e-05  Score=79.46  Aligned_cols=187  Identities=9%  Similarity=0.038  Sum_probs=104.7

Q ss_pred             CcceEEEEEecCCCCcEEEEEEC-CCcEEEEECCCCCCCCCCCCCCCCceee--cccCCceeEEEEecCCCCEEEEEeCC
Q 004468           93 SANVFCTKFVPETSDELVVSGAG-DAEVRLFNLSRFSGRGLDDNAITPSALY--QCHTRRVKKLAVEVGNPHVVWSASED  169 (751)
Q Consensus        93 ~~~V~~v~fsp~s~~~~l~sgs~-Dg~V~vwd~~~~~~~~~~~~~~~~~~~~--~~h~~~V~~l~~sp~~~~~l~s~s~D  169 (751)
                      ...+.++.|+|+  |+++++++. ...|.+|++... +..      ......  .........++|+|++..++++.-.+
T Consensus       144 ~~h~h~v~~sPd--G~~l~v~d~g~d~v~~~~~~~~-g~~------~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~  214 (365)
T d1jofa_         144 NTGIHGMVFDPT--ETYLYSADLTANKLWTHRKLAS-GEV------ELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAG  214 (365)
T ss_dssp             TCCEEEEEECTT--SSEEEEEETTTTEEEEEEECTT-SCE------EEEEEEECSSTTCCEEEEEECTTSSEEEEEETTT
T ss_pred             CCcceEEEECCC--CCEEEEeeCCCCEEEEEEccCC-Cce------eeccceeecCCCCceEEEEECCCCceEEEeccCC
Confidence            345789999999  787776653 557888887642 111      111111  12345688999999665566677778


Q ss_pred             CcEEEEecCCCCCCCCCCCCCCccceEEEecc-cCceecccCCCCCccceEEEEEeCCCCcEEEEEeC-C-----CeEEE
Q 004468          170 GTLRQHDFRQGSSCPPAGSSHQECRNILLDLR-CGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGS-D-----AFARL  242 (751)
Q Consensus       170 g~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~-D-----~~Iri  242 (751)
                      ++|.+|++.........      . ..-..+. .+.................+.++|+ +++|+++.. +     ..|..
T Consensus       215 ~~V~v~~~~~~~~~~~~------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spd-G~~lyvsnr~~~~~~~~~i~~  286 (365)
T d1jofa_         215 NRICEYVIDPATHMPVY------T-HHSFPLIPPGIPDRDPETGKGLYRADVCALTFS-GKYMFASSRANKFELQGYIAG  286 (365)
T ss_dssp             TEEEEEEECTTTCCEEE------E-EEEEESSCTTCCCBCTTTSSBSEEEEEEEECTT-SSEEEEEEEESSTTSCCEEEE
T ss_pred             CEEEEEEecCCCceEEE------E-eeeeccccccccccccccccccCCccceEECCC-CCEEEEEcccCCCccceEEEE
Confidence            99999999766422000      0 0000000 0000001111123345678899995 677666532 2     23777


Q ss_pred             EeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcC-CCCEEEEEe-CCCcEEEEECCCC
Q 004468          243 YDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSP-NGEEVLLSY-SGEHVYLMDVNHA  311 (751)
Q Consensus       243 wD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fsp-dg~~Ll~~s-~d~~I~lwdl~~~  311 (751)
                      |++.....+...            ........   .+.....++|+| +|++|+++. .++.|.+|+++..
T Consensus       287 ~~~~~~g~~~~~------------~~~~~~~~---~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~  342 (365)
T d1jofa_         287 FKLRDCGSIEKQ------------LFLSPTPT---SGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             EEECTTSCEEEE------------EEEEECSS---CCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             EEecCCCceeeE------------eEeeEEEc---CCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCC
Confidence            776643222110            00000000   111356789998 899888775 5799999998764

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.29  E-value=4.2e-06  Score=75.33  Aligned_cols=126  Identities=17%  Similarity=0.088  Sum_probs=102.1

Q ss_pred             cchhHHHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCC--Cc--------hhhhhHhHHHHHhhcccccchhhhHHHh
Q 004468          360 LGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIG--PM--------LRHECLCIRAALLLKRKWKNDAQMAIRD  429 (751)
Q Consensus       360 ~~~~~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~--~~--------~~~~~~~~ra~~~~~r~w~~d~y~al~d  429 (751)
                      ......+.+.|+..+..|. |..|+..|.++|........  +.        +...+|.|+|..+++.+.   ...|+.+
T Consensus        14 ~~~a~~~~~~G~~~f~~~~-y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~---~~~Al~~   89 (153)
T d2fbna1          14 VQSAFDIKEEGNEFFKKNE-INEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKD---YPKAIDH   89 (153)
T ss_dssp             HHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTC---HHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcc---cchhhhh
Confidence            3455667788889998888 99999999999976654321  11        112378899999998875   5569999


Q ss_pred             hHHHhcCCCCCcchHHHHHHHHHHhcchHHHHHHHHHhcccCCCChhhhHHHHHHHHHHH
Q 004468          430 CYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHIA  489 (751)
Q Consensus       430 ~~~a~~~~~~~~~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~  489 (751)
                      |..++.++|.+++++++++.|+..+|++.+|+.++.......|........+..+...+.
T Consensus        90 ~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~kl~  149 (153)
T d2fbna1          90 ASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLK  149 (153)
T ss_dssp             HHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred             hhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999988876666666555553

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.23  E-value=9.8e-05  Score=74.64  Aligned_cols=206  Identities=10%  Similarity=0.071  Sum_probs=126.4

Q ss_pred             cEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCC----cceEEEEEecCCCCcEEEEEEC------------
Q 004468           52 CVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHS----ANVFCTKFVPETSDELVVSGAG------------  115 (751)
Q Consensus        52 ~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~----~~V~~v~fsp~s~~~~l~sgs~------------  115 (751)
                      .-+.|.|.++|++|+++.....|...+...+.... +.....    ...+.+++.|+  |.+.+|-..            
T Consensus        72 ~P~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~~~~-~~~~~~g~~~~~pndl~~d~~--G~lyvtd~~~~~~~~~~~~~~  148 (314)
T d1pjxa_          72 IPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEI-AKKDSEGRRMQGCNDCAFDYE--GNLWITAPAGEVAPADYTRSM  148 (314)
T ss_dssp             CEEEEEECSSSSEEEEEETTTEEEEEETTSCEEEC-CSBCTTSCBCBCCCEEEECTT--SCEEEEECBCBCTTSCCCBTT
T ss_pred             cceeEEEeCCCCEEEEEECCCeEEEEeCCCcEEEE-EeccccccccCCCcEEEECCC--CCEEEecCccCccccccccee
Confidence            46789999999988888877788888987554322 211111    13678999998  788777432            


Q ss_pred             ---CCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCC----CEEEEEeCCCcEEEEecCCCCCCCCCCC
Q 004468          116 ---DAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNP----HVVWSASEDGTLRQHDFRQGSSCPPAGS  188 (751)
Q Consensus       116 ---Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~----~~l~s~s~Dg~I~iwDlr~~~~~~~~~~  188 (751)
                         ++.|..++...           + ...+...-...+.++|+|++.    .++++-+..+.|..||+......     
T Consensus       149 ~~~~G~v~~~~~dg-----------~-~~~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~-----  211 (314)
T d1pjxa_         149 QEKFGSIYCFTTDG-----------Q-MIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKI-----  211 (314)
T ss_dssp             SSSCEEEEEECTTS-----------C-EEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEE-----
T ss_pred             ccCCceEEEEeecC-----------c-eeEeeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCcccc-----
Confidence               12233333221           1 222222334457899998542    36667778889999987643211     


Q ss_pred             CCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCcccccc
Q 004468          189 SHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFC  268 (751)
Q Consensus       189 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~  268 (751)
                         ....++..+..          ........+++.++ ++++++....+.|.+||.........+..            
T Consensus       212 ---~~~~~~~~~~~----------~~~~~pdGiavD~~-GnlyVa~~~~g~I~~~dp~~g~~~~~i~~------------  265 (314)
T d1pjxa_         212 ---ENKKVWGHIPG----------THEGGADGMDFDED-NNLLVANWGSSHIEVFGPDGGQPKMRIRC------------  265 (314)
T ss_dssp             ---EEEEEEEECCC----------CSSCEEEEEEEBTT-CCEEEEEETTTEEEEECTTCBSCSEEEEC------------
T ss_pred             ---ceeeEEEEccc----------cccccceeeEEecC-CcEEEEEcCCCEEEEEeCCCCEEEEEEEC------------
Confidence               00111211111          11223567899984 78888888889999999876543222110            


Q ss_pred             ccccccCCccccceEEEEEcCCCCEEE-EEeCCCcEEEEECCCCC
Q 004468          269 PMHLSEHGRSSLHLTHVTFSPNGEEVL-LSYSGEHVYLMDVNHAG  312 (751)
Q Consensus       269 ~~~~~~~g~~~~~vt~v~fspdg~~Ll-~~s~d~~I~lwdl~~~~  312 (751)
                              . ...+++++|.||++.|+ +.+.++.|+.+++...+
T Consensus       266 --------p-~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~~G  301 (314)
T d1pjxa_         266 --------P-FEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRNG  301 (314)
T ss_dssp             --------S-SSCEEEEEECTTSSEEEEEETTTTEEEEEECSSCB
T ss_pred             --------C-CCCEEEEEEeCCCCEEEEEECCCCcEEEEECCCCC
Confidence                    0 11488999999998665 45567899999987744

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.19  E-value=0.00025  Score=71.69  Aligned_cols=214  Identities=9%  Similarity=0.071  Sum_probs=125.4

Q ss_pred             EeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECC--CcEEEE
Q 004468           45 ELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD--AEVRLF  122 (751)
Q Consensus        45 ~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~D--g~V~vw  122 (751)
                      .+....-.+..++|.++|++.++-...+.|..|+...+.....+ .........++|.|+  |+++++...+  ....++
T Consensus        34 ~~~~~~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~-~~~~~~p~gla~~~d--G~l~va~~~~~~~~~~i~  110 (319)
T d2dg1a1          34 EISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPF-VSHKANPAAIKIHKD--GRLFVCYLGDFKSTGGIF  110 (319)
T ss_dssp             EEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEE-ECSSSSEEEEEECTT--SCEEEEECTTSSSCCEEE
T ss_pred             EeccCCcCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEE-eCCCCCeeEEEECCC--CCEEEEecCCCccceeEE
Confidence            33333445578999999998888888999999998877655555 455667899999998  7877765443  334444


Q ss_pred             ECCCCCCCCCCCCCCCCceeeccc---CCceeEEEEecCCCCEEEEEeCC------CcEEEEecCCCCCCCCCCCCCCcc
Q 004468          123 NLSRFSGRGLDDNAITPSALYQCH---TRRVKKLAVEVGNPHVVWSASED------GTLRQHDFRQGSSCPPAGSSHQEC  193 (751)
Q Consensus       123 d~~~~~~~~~~~~~~~~~~~~~~h---~~~V~~l~~sp~~~~~l~s~s~D------g~I~iwDlr~~~~~~~~~~~~~~~  193 (751)
                      .+.....         .+..+..+   ...+..+++.+ +++++++....      +.+..++.....            
T Consensus       111 ~~~~~~~---------~~~~~~~~~~~~~~~nd~~~d~-~G~l~vtd~~~~~~~~~g~v~~~~~dg~~------------  168 (319)
T d2dg1a1         111 AATENGD---------NLQDIIEDLSTAYCIDDMVFDS-KGGFYFTDFRGYSTNPLGGVYYVSPDFRT------------  168 (319)
T ss_dssp             EECTTSC---------SCEEEECSSSSCCCEEEEEECT-TSCEEEEECCCBTTBCCEEEEEECTTSCC------------
T ss_pred             EEcCCCc---------eeeeeccCCCcccCCcceeEEe-ccceeecccccccccCcceeEEEecccce------------
Confidence            4443211         11221111   23467788888 55666553221      122222222111            


Q ss_pred             ceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccc
Q 004468          194 RNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLS  273 (751)
Q Consensus       194 ~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (751)
                      ...+..              .....+.++|+|++..++++-+..+.|+.||+.........         .....+... 
T Consensus       169 ~~~~~~--------------~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~---------~~~~~~~~~-  224 (319)
T d2dg1a1         169 VTPIIQ--------------NISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQP---------FGATIPYYF-  224 (319)
T ss_dssp             EEEEEE--------------EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEE---------EEEEEEEEC-
T ss_pred             eEEEee--------------ccceeeeeeeccccceEEEecccCCceEEEEEcCCCceecc---------ccceeeecc-
Confidence            001110              11235679999964445566677899999997643211100         000000000 


Q ss_pred             cCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004468          274 EHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (751)
Q Consensus       274 ~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~  310 (751)
                       .+.  .....++++++|+..++....+.|.+||-..
T Consensus       225 -~~~--~~PdGl~vD~~G~l~Va~~~~g~V~~~~p~G  258 (319)
T d2dg1a1         225 -TGH--EGPDSCCIDSDDNLYVAMYGQGRVLVFNKRG  258 (319)
T ss_dssp             -CSS--SEEEEEEEBTTCCEEEEEETTTEEEEECTTS
T ss_pred             -CCc--cceeeeeEcCCCCEEEEEcCCCEEEEECCCC
Confidence             011  1256799999999888888899999999643

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.18  E-value=8.8e-05  Score=72.67  Aligned_cols=197  Identities=6%  Similarity=0.015  Sum_probs=128.4

Q ss_pred             cEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCC
Q 004468           52 CVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRG  131 (751)
Q Consensus        52 ~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~  131 (751)
                      ....|+++++|+++++....+.|++++-.+...+...  .......++++.++  ++++++-.....+.+++......  
T Consensus        58 ~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~~--~~~~~p~~iavd~~--g~i~v~d~~~~~~~~~~~~~~~~--  131 (260)
T d1rwia_          58 QPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPF--DGLNYPEGLAVDTQ--GAVYVADRGNNRVVKLAAGSKTQ--  131 (260)
T ss_dssp             SCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECCC--CSCCSEEEEEECTT--CCEEEEEGGGTEEEEECTTCSSC--
T ss_pred             CceEEEEcCCCCEEEeeeeeceeeeeeeccceeeeee--eeeeeccccccccc--ceeEeecccccccccccccccee--
Confidence            3568899999998888877777777765555544333  33456789999998  78887766677777777654211  


Q ss_pred             CCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCC
Q 004468          132 LDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADP  211 (751)
Q Consensus       132 ~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  211 (751)
                             ..... .-......+++.+ +++++++...++.|..+|.......             .+            .
T Consensus       132 -------~~~~~-~~~~~p~~i~~~~-~g~~~v~~~~~~~i~~~d~~~~~~~-------------~~------------~  177 (260)
T d1rwia_         132 -------TVLPF-TGLNDPDGVAVDN-SGNVYVTDTDNNRVVKLEAESNNQV-------------VL------------P  177 (260)
T ss_dssp             -------EECCC-CSCCSCCEEEECT-TCCEEEEEGGGTEEEEECTTTCCEE-------------EC------------C
T ss_pred             -------eeeee-cccCCcceeeecC-CCCEeeeccccccccccccccceee-------------ee------------e
Confidence                   01111 1234457899998 6688888888899999987754311             00            0


Q ss_pred             CCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCC
Q 004468          212 PKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNG  291 (751)
Q Consensus       212 ~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg  291 (751)
                      .........+++.++ ++++++....+.|..++....... .             +..     . . -...+.|+++++|
T Consensus       178 ~~~~~~p~gi~~d~~-g~l~vsd~~~~~i~~~~~~~~~~~-~-------------~~~-----~-~-~~~P~~i~~d~~g  235 (260)
T d1rwia_         178 FTDITAPWGIAVDEA-GTVYVTEHNTNQVVKLLAGSTTST-V-------------LPF-----T-G-LNTPLAVAVDSDR  235 (260)
T ss_dssp             CSSCCSEEEEEECTT-CCEEEEETTTTEEEEECTTCSCCE-E-------------CCC-----C-S-CCCEEEEEECTTC
T ss_pred             ccccCCCccceeeee-eeeeeeecCCCEEEEEeCCCCeEE-E-------------Ecc-----C-C-CCCeEEEEEeCCC
Confidence            012234578899985 688888777888888876532210 0             000     0 0 0136899999999


Q ss_pred             CEEEEEeCCCcEEEEECCC
Q 004468          292 EEVLLSYSGEHVYLMDVNH  310 (751)
Q Consensus       292 ~~Ll~~s~d~~I~lwdl~~  310 (751)
                      +.+++...++.|+.++...
T Consensus       236 ~l~vad~~~~rI~~i~~~~  254 (260)
T d1rwia_         236 TVYVADRGNDRVVKLTSLE  254 (260)
T ss_dssp             CEEEEEGGGTEEEEECCCG
T ss_pred             CEEEEECCCCEEEEEeCCC
Confidence            9888877788777665443

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.17  E-value=0.00014  Score=75.21  Aligned_cols=266  Identities=9%  Similarity=0.073  Sum_probs=133.7

Q ss_pred             CCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCC-CeEEEEecccCCcceEEEEEecCCCCcE--EEEEE-CCCcEEEEEC
Q 004468           49 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSS-RKLLHSIETGHSANVFCTKFVPETSDEL--VVSGA-GDAEVRLFNL  124 (751)
Q Consensus        49 H~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~-~~~~~~l~~~h~~~V~~v~fsp~s~~~~--l~sgs-~Dg~V~vwd~  124 (751)
                      ....+.-|+|++++++|.+++. +.+..|.+.. +................+.++|+  ++.  ++++. ..++|..+.+
T Consensus        38 ~~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~~--~~~~~v~~a~~~~~~v~~~~~  114 (365)
T d1jofa_          38 QDEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIGGHPRANDADTN--TRAIFLLAAKQPPYAVYANPF  114 (365)
T ss_dssp             TTCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSC--CEEEEEEECSSTTCCEEEEEE
T ss_pred             CCCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCCCCcEEEEECCC--CCEEEEEEecCCCCEEEEeEc
Confidence            4455667999999999988765 4677776653 33322221122344566778888  453  33322 2455655554


Q ss_pred             CCCCCCCC-----CCCCC-CCcee-ecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEE
Q 004468          125 SRFSGRGL-----DDNAI-TPSAL-YQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNIL  197 (751)
Q Consensus       125 ~~~~~~~~-----~~~~~-~~~~~-~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l  197 (751)
                      ....+...     ..... .+... -......+.++.|+|++..++++......|.+|++......           ...
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~-----------~~~  183 (365)
T d1jofa_         115 YKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEV-----------ELV  183 (365)
T ss_dssp             SSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCE-----------EEE
T ss_pred             cCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCce-----------eec
Confidence            32111000     00000 00000 11123347899999955445544444567888876543211           000


Q ss_pred             EecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCc
Q 004468          198 LDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGR  277 (751)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  277 (751)
                      -        .+.. .........++|+|++..+.++.-.++.|.+|++...+..........+  ......+........
T Consensus       184 ~--------~~~~-~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~  252 (365)
T d1jofa_         184 G--------SVDA-PDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFP--LIPPGIPDRDPETGK  252 (365)
T ss_dssp             E--------EEEC-SSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEE--SSCTTCCCBCTTTSS
T ss_pred             c--------ceee-cCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeec--ccccccccccccccc
Confidence            0        0000 1122457889999975445566678899999998765422110000000  000000000000011


Q ss_pred             cccceEEEEEcCCCCEEEEEeC-C-----CcEEEEECCCCCcceeee------ecCCCceeEEeCC-CCCCcccC
Q 004468          278 SSLHLTHVTFSPNGEEVLLSYS-G-----EHVYLMDVNHAGGRAMRY------TVGDASKIMSFTP-TLNGLELQ  339 (751)
Q Consensus       278 ~~~~vt~v~fspdg~~Ll~~s~-d-----~~I~lwdl~~~~~~~~~~------~~~~~~~~~~~sp-~~~~~~~~  339 (751)
                      .......+.++|||++|+++.. +     ..|..|++..........      ..+..++.++++| +.+-+...
T Consensus       253 ~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va  327 (365)
T d1jofa_         253 GLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAIT  327 (365)
T ss_dssp             BSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEE
T ss_pred             ccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEE
Confidence            1123678999999999988753 2     238888887644322111      1244566788887 44434333

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.14  E-value=0.00032  Score=70.72  Aligned_cols=250  Identities=8%  Similarity=0.067  Sum_probs=135.5

Q ss_pred             cEEEEEECCCCCEEEEEeC-------CCcEEEEeCCCCeEEEEecc---cCCcceEEEEEecCCCCcEEEEEECCCcEEE
Q 004468           52 CVNAISWNSKGSLLISGSD-------DTHINVWSYSSRKLLHSIET---GHSANVFCTKFVPETSDELVVSGAGDAEVRL  121 (751)
Q Consensus        52 ~V~~l~~s~dg~~LaSgs~-------Dg~I~IWd~~~~~~~~~l~~---~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~v  121 (751)
                      ....++|.++|+++++...       +++|..||..++........   .-.+.-..++|.++  +..|+.+...+.|..
T Consensus        19 g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~d--g~~l~vad~~~~i~~   96 (314)
T d1pjxa_          19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRD--ANQLFVADMRLGLLV   96 (314)
T ss_dssp             TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSS--SSEEEEEETTTEEEE
T ss_pred             CCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCC--CCEEEEEECCCeEEE
Confidence            3557899999998876533       46789999887765443311   11233568999999  777777777777888


Q ss_pred             EECCCCCCCCCCCCCCCCceeecccC-CceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEec
Q 004468          122 FNLSRFSGRGLDDNAITPSALYQCHT-RRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDL  200 (751)
Q Consensus       122 wd~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~  200 (751)
                      .+.........       .....+.. ...+.+++.+ ++.+.++-.. +.+..|+.....         ......++.+
T Consensus        97 ~~~~g~~~~~~-------~~~~~g~~~~~pndl~~d~-~G~lyvtd~~-~~~~~~~~~~~~---------~~~~G~v~~~  158 (314)
T d1pjxa_          97 VQTDGTFEEIA-------KKDSEGRRMQGCNDCAFDY-EGNLWITAPA-GEVAPADYTRSM---------QEKFGSIYCF  158 (314)
T ss_dssp             EETTSCEEECC-------SBCTTSCBCBCCCEEEECT-TSCEEEEECB-CBCTTSCCCBTT---------SSSCEEEEEE
T ss_pred             EeCCCcEEEEE-------eccccccccCCCcEEEECC-CCCEEEecCc-cCccccccccee---------ccCCceEEEE
Confidence            88764311000       00011111 1356788888 5566655322 111111111000         0000111111


Q ss_pred             c-cCceecccCCCCCccceEEEEEeCCCC----cEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccC
Q 004468          201 R-CGAKRSLADPPKQTLSLKSCDISSTRP----HLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEH  275 (751)
Q Consensus       201 ~-~~~~~~~~~~~~~~~~v~~i~~sp~~~----~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (751)
                      . .+....+.   ......+.++|+|++.    .++++-+..+.|..||+.....+..          .+.+.  .+.  
T Consensus       159 ~~dg~~~~~~---~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~----------~~~~~--~~~--  221 (314)
T d1pjxa_         159 TTDGQMIQVD---TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIEN----------KKVWG--HIP--  221 (314)
T ss_dssp             CTTSCEEEEE---EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEE----------EEEEE--ECC--
T ss_pred             eecCceeEee---CCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccce----------eeEEE--Ecc--
Confidence            1 11111110   0112346788988532    2555567788999998753321110          00010  000  


Q ss_pred             CccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcceeeeecCCCceeEEeCCCCCCccc
Q 004468          276 GRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLEL  338 (751)
Q Consensus       276 g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~  338 (751)
                      +......-.+++.++|+..++....+.|++||...+............+..++|.|+.+.+..
T Consensus       222 ~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyV  284 (314)
T d1pjxa_         222 GTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFV  284 (314)
T ss_dssp             CCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEE
T ss_pred             ccccccceeeEEecCCcEEEEEcCCCEEEEEeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEE
Confidence            001112568999999998888888999999998875533333334456778999887765533

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.11  E-value=6e-05  Score=75.74  Aligned_cols=210  Identities=11%  Similarity=0.078  Sum_probs=128.9

Q ss_pred             cEEeccCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCC--CeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEE
Q 004468           43 ERELEGHQGCVNAISWNSKGSLLISGSDDTHINVWSYSS--RKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVR  120 (751)
Q Consensus        43 ~~~L~gH~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~--~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~  120 (751)
                      ...+....+.+++++|+++|+++++...++.+.+|+...  +..............+.+.+.++  +.++++-+.++.+.
T Consensus        60 ~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~--g~~~v~~~~~~~i~  137 (302)
T d2p4oa1          60 QQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSD--TQYLTADSYRGAIW  137 (302)
T ss_dssp             EEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSS--SEEEEEETTTTEEE
T ss_pred             EEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeeccccCCccccceeEEccC--CCEEeeccccccce
Confidence            344556678899999999999999998888888887643  22222221244566889999998  78888888888888


Q ss_pred             EEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEec
Q 004468          121 LFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDL  200 (751)
Q Consensus       121 vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~  200 (751)
                      .++..........................+..+.+.  +..++++.+..+.|..+++........        ...+.  
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~--~~~l~~~~~~~~~i~~~~~~~~~~~~~--------~~~~~--  205 (302)
T d2p4oa1         138 LIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRF--GNFLYVSNTEKMLLLRIPVDSTDKPGE--------PEIFV--  205 (302)
T ss_dssp             EEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEE--TTEEEEEETTTTEEEEEEBCTTSCBCC--------CEEEE--
T ss_pred             eeeccCCcceeEecCCccceeeccCccccccccccc--CCceeeecCCCCeEEeccccccccccc--------ccccc--
Confidence            888775421110000000000111122334566665  456788888899999998876532100        01111  


Q ss_pred             ccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCcccc
Q 004468          201 RCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSL  280 (751)
Q Consensus       201 ~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  280 (751)
                                   .......+++.++ ++++++...++.|..|+......               .+....   .+.  .
T Consensus       206 -------------~~~~pdgia~d~d-G~l~va~~~~~~V~~i~p~G~~~---------------~~~~~~---~~~--~  251 (302)
T d2p4oa1         206 -------------EQTNIDDFAFDVE-GNLYGATHIYNSVVRIAPDRSTT---------------IIAQAE---QGV--I  251 (302)
T ss_dssp             -------------ESCCCSSEEEBTT-CCEEEECBTTCCEEEECTTCCEE---------------EEECGG---GTC--T
T ss_pred             -------------CCCCCcceEECCC-CCEEEEEcCCCcEEEECCCCCEE---------------EEEecC---CCC--C
Confidence                         1123456899995 68888888889999987653210               000000   011  1


Q ss_pred             ceEEEEE---cCCCCEEEEEeCC
Q 004468          281 HLTHVTF---SPNGEEVLLSYSG  300 (751)
Q Consensus       281 ~vt~v~f---spdg~~Ll~~s~d  300 (751)
                      ..++++|   ++|++.|++++..
T Consensus       252 ~pt~vafg~~~~D~~~Lyvtt~~  274 (302)
T d2p4oa1         252 GSTAVAFGQTEGDCTAIYVVTNG  274 (302)
T ss_dssp             TEEEEEECCSTTTTTEEEEEECT
T ss_pred             CceEEEEcCCCCCCCEEEEECCC
Confidence            3799999   7788988877654

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.10  E-value=0.00024  Score=70.28  Aligned_cols=158  Identities=9%  Similarity=0.101  Sum_probs=94.0

Q ss_pred             cceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceee--cccCCceeEEEEecCCCCEEEEEeCCCc
Q 004468           94 ANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALY--QCHTRRVKKLAVEVGNPHVVWSASEDGT  171 (751)
Q Consensus        94 ~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~--~~h~~~V~~l~~sp~~~~~l~s~s~Dg~  171 (751)
                      .....+++.++  +.++++....+.+.+++...           +.+..+  ..+......+++.+ ++.++++....+.
T Consensus       114 ~~p~~~avd~~--G~i~v~~~~~~~~~~~~~~g-----------~~~~~~g~~~~~~~~~~i~~d~-~g~i~v~d~~~~~  179 (279)
T d1q7fa_         114 QHPRGVTVDNK--GRIIVVECKVMRVIIFDQNG-----------NVLHKFGCSKHLEFPNGVVVND-KQEIFISDNRAHC  179 (279)
T ss_dssp             SCEEEEEECTT--SCEEEEETTTTEEEEECTTS-----------CEEEEEECTTTCSSEEEEEECS-SSEEEEEEGGGTE
T ss_pred             cccceeccccC--CcEEEEeeccceeeEeccCC-----------ceeecccccccccccceeeecc-ceeEEeeeccccc
Confidence            34445555554  45555544445555555432           223332  34556677888887 5678888888899


Q ss_pred             EEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEe-CCCeEEEEeCCCCCC
Q 004468          172 LRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGG-SDAFARLYDRRMLPP  250 (751)
Q Consensus       172 I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs-~D~~IriwD~~~~~~  250 (751)
                      |++||.....               +....         .++.......|++.|+ ++++++-. .+..|.+|+.. ++.
T Consensus       180 V~~~d~~G~~---------------~~~~g---------~~g~~~~P~giavD~~-G~i~Vad~~~~~~v~~f~~~-G~~  233 (279)
T d1q7fa_         180 VKVFNYEGQY---------------LRQIG---------GEGITNYPIGVGINSN-GEILIADNHNNFNLTIFTQD-GQL  233 (279)
T ss_dssp             EEEEETTCCE---------------EEEES---------CTTTSCSEEEEEECTT-CCEEEEECSSSCEEEEECTT-SCE
T ss_pred             eeeeecCCce---------------eeeec---------ccccccCCcccccccC-CeEEEEECCCCcEEEEECCC-CCE
Confidence            9999865321               11110         1123345678999995 57666644 45579999853 332


Q ss_pred             ccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 004468          251 LTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHA  311 (751)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~  311 (751)
                      +..+..                  .. .....+.|++.|||.. +++..++.|++|.....
T Consensus       234 ~~~~~~------------------~~-~~~~p~~vav~~dG~l-~V~~~n~~v~~fr~~~~  274 (279)
T d1q7fa_         234 ISALES------------------KV-KHAQCFDVALMDDGSV-VLASKDYRLYIYRYVQL  274 (279)
T ss_dssp             EEEEEE------------------SS-CCSCEEEEEEETTTEE-EEEETTTEEEEEECSCC
T ss_pred             EEEEeC------------------CC-CCCCEeEEEEeCCCcE-EEEeCCCeEEEEEeeee
Confidence            222110                  00 0113688999999975 45567899999998873

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=98.07  E-value=1.9e-05  Score=72.09  Aligned_cols=125  Identities=15%  Similarity=0.092  Sum_probs=101.3

Q ss_pred             cchhHHHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCc---------hhhhhHhHHHHHhhcccccchhhhHHHhh
Q 004468          360 LGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPM---------LRHECLCIRAALLLKRKWKNDAQMAIRDC  430 (751)
Q Consensus       360 ~~~~~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~---------~~~~~~~~ra~~~~~r~w~~d~y~al~d~  430 (751)
                      ...+..+.+.|+..+..|. |..|+..|..+|...+......         +...+|.|+|..+.+.   ++...|+.+|
T Consensus        12 ~~~a~~~~e~G~~~~~~~~-~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l---~~~~~Ai~~~   87 (168)
T d1kt1a1          12 LEQAAIVKEKGTVYFKGGK-YVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKL---REYTKAVECC   87 (168)
T ss_dssp             HHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHT---TCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHh---hhcccchhhh
Confidence            3456778888999999999 9999999999987655433211         1234788999999884   4567899999


Q ss_pred             HHHhcCCCCCcchHHHHHHHHHHhcchHHHHHHHHHhcccCCCChhhhHHHHHHHHHH
Q 004468          431 YNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHI  488 (751)
Q Consensus       431 ~~a~~~~~~~~~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~  488 (751)
                      ..++.++|.+.+++++++.|+..++++.+|..++..+....|........+..+...+
T Consensus        88 ~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~  145 (168)
T d1kt1a1          88 DKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKA  145 (168)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred             hhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999998876655555554444

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.96  E-value=3.4e-05  Score=69.52  Aligned_cols=112  Identities=16%  Similarity=0.103  Sum_probs=97.7

Q ss_pred             cchhHHHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCC
Q 004468          360 LGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSS  439 (751)
Q Consensus       360 ~~~~~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~  439 (751)
                      .++...|.+.|+..+..|+ |..|+..|+++|...+..      ...|.+++..++..+.   .-.|+.++.++++++|.
T Consensus         7 l~~a~~l~~~gn~~~~~~~-y~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~~~---~~~A~~~~~kal~~~p~   76 (159)
T d1a17a_           7 LKRAEELKTQANDYFKAKD-YENAIKFYSQAIELNPSN------AIYYGNRSLAYLRTEC---YGYALGDATRAIELDKK   76 (159)
T ss_dssp             HHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHHHHcCC-HHHHHHHhhhccccchhh------hhhhhhhHHHHHhccc---cchHHHHHHHHHHHccc
Confidence            3667888999999999999 999999999999987654      5578899999998764   55699999999999999


Q ss_pred             CcchHHHHHHHHHHhcchHHHHHHHHHhcccCCCChhhhHHH
Q 004468          440 SFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKV  481 (751)
Q Consensus       440 ~~~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~~~~~~~  481 (751)
                      +.+++++++.++..+|++.+|..++.......|........+
T Consensus        77 ~~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~p~~~~~~~~l  118 (159)
T d1a17a_          77 YIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKY  118 (159)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             chHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence            999999999999999999999999999999999876654333

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.94  E-value=0.00063  Score=66.02  Aligned_cols=205  Identities=10%  Similarity=0.050  Sum_probs=114.7

Q ss_pred             cEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECC-C--cEEEEECCCCCCCCCCCCCCCCceeecccCCc
Q 004468           73 HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD-A--EVRLFNLSRFSGRGLDDNAITPSALYQCHTRR  149 (751)
Q Consensus        73 ~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~D-g--~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~  149 (751)
                      .|.|-|.. |.....+ ..+...+.+-+|||+  |+.||-.... +  .+.+.+....           ....+..+...
T Consensus        20 ~l~i~d~d-G~~~~~l-~~~~~~~~sP~wSPD--Gk~IAf~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~   84 (269)
T d2hqsa1          20 ELRVSDYD-GYNQFVV-HRSPQPLMSPAWSPD--GSKLAYVTFESGRSALVIQTLANG-----------AVRQVASFPRH   84 (269)
T ss_dssp             EEEEEETT-SCSCEEE-EEESSCEEEEEECTT--SSEEEEEECTTSSCEEEEEETTTC-----------CEEEEECCSSC
T ss_pred             EEEEEcCC-CCCcEEE-ecCCCceeeeEECCC--CCEEEEEEeeccCcceeeeecccC-----------ceeEEeeeecc
Confidence            46676765 4444444 456777899999999  8888855443 3  3555555532           24455667888


Q ss_pred             eeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCc
Q 004468          150 VKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPH  229 (751)
Q Consensus       150 V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~  229 (751)
                      +....|+|++..++.....++...++........                     ....   ...........+++....
T Consensus        85 ~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~---------------------~~~~---~~~~~~~~~~~~~~~~~~  140 (269)
T d2hqsa1          85 NGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ---------------------IRQV---TDGRSNNTEPTWFPDSQN  140 (269)
T ss_dssp             EEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC---------------------EEEC---CCCSSCEEEEEECTTSSE
T ss_pred             cccceecCCCCeeeEeeecCCccceeeccccccc---------------------ceee---eecccccccccccccccc
Confidence            8999999955444444444444444333222110                     0000   011222334456665455


Q ss_pred             EEEEEeCCCeEE--EEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCC-C--cEE
Q 004468          230 LLLVGGSDAFAR--LYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSG-E--HVY  304 (751)
Q Consensus       230 ~l~sgs~D~~Ir--iwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d-~--~I~  304 (751)
                      .+++...++...  ++++........                     ... ........|+|+|+.++..+.+ +  .|.
T Consensus       141 ~~~~~~~~g~~~i~~~~~~~~~~~~~---------------------~~~-~~~~~~~~~spdg~~~~~~~~~~~~~~i~  198 (269)
T d2hqsa1         141 LAFTSDQAGRPQVYKVNINGGAPQRI---------------------TWE-GSQNQDADVSSDGKFMVMVSSNGGQQHIA  198 (269)
T ss_dssp             EEEEECTTSSCEEEEEETTSSCCEEC---------------------CCS-SSEEEEEEECTTSSEEEEEEECSSCEEEE
T ss_pred             ceecccccCCceEeeeecccccceee---------------------ecc-cccccccccccccceeEEEeecCCceeee
Confidence            666666666544  444443221000                     001 1136778999999998877664 4  444


Q ss_pred             EEECCCCCcceeeeecCCCceeEEeCCCCCCcccCC
Q 004468          305 LMDVNHAGGRAMRYTVGDASKIMSFTPTLNGLELQP  340 (751)
Q Consensus       305 lwdl~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~  340 (751)
                      +.+...+  ...............|+|+.+.+.+..
T Consensus       199 ~~~~~~~--~~~~~~~~~~~~~p~~SPDG~~i~f~s  232 (269)
T d2hqsa1         199 KQDLATG--GVQVLSSTFLDETPSLAPNGTMVIYSS  232 (269)
T ss_dssp             EEETTTC--CEEECCCSSSCEEEEECTTSSEEEEEE
T ss_pred             Eeecccc--cceEeecCccccceEECCCCCEEEEEE
Confidence            4455443  334444455666788999999887753

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.93  E-value=3.6e-05  Score=70.33  Aligned_cols=123  Identities=18%  Similarity=0.106  Sum_probs=99.1

Q ss_pred             hhHHHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCC--C-------chhhhhHhHHHHHhhcccccchhhhHHHhhHH
Q 004468          362 KCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIG--P-------MLRHECLCIRAALLLKRKWKNDAQMAIRDCYN  432 (751)
Q Consensus       362 ~~~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~--~-------~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~  432 (751)
                      ....+...|+..+..+. |..|+..|.++|...+....  .       .+...+|.|+|..+++.+   +...|+.++..
T Consensus        12 ~a~~l~~~G~~~~~~~~-~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~---~~~~A~~~~~~   87 (170)
T d1p5qa1          12 QSTIVKERGTVYFKEGK-YKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQ---AFSAAIESCNK   87 (170)
T ss_dssp             HHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhh---hcccccchhhh
Confidence            35566778888888888 99999999999986554322  1       112346789999999864   46779999999


Q ss_pred             HhcCCCCCcchHHHHHHHHHHhcchHHHHHHHHHhcccCCCChhhhHHHHHHHHHH
Q 004468          433 ARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHI  488 (751)
Q Consensus       433 a~~~~~~~~~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~  488 (751)
                      ++.++|.+++++++++.|+..+|++.+|+.+++.+....|.+......+..+...+
T Consensus        88 al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~  143 (170)
T d1p5qa1          88 ALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRI  143 (170)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHH
T ss_pred             hhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999998877665555554444

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.86  E-value=0.0011  Score=66.75  Aligned_cols=217  Identities=13%  Similarity=0.104  Sum_probs=124.6

Q ss_pred             eccCCCcEEEEEECCCCCEEEEEeCC----CcEEEEeCCCCeEEEEecc-cCCcceEEEEEecCCCCcEEEEEECC----
Q 004468           46 LEGHQGCVNAISWNSKGSLLISGSDD----THINVWSYSSRKLLHSIET-GHSANVFCTKFVPETSDELVVSGAGD----  116 (751)
Q Consensus        46 L~gH~~~V~~l~~s~dg~~LaSgs~D----g~I~IWd~~~~~~~~~l~~-~h~~~V~~v~fsp~s~~~~l~sgs~D----  116 (751)
                      +....+..+.|+|+++|+++++...+    +.|...+............ .-....+.+++.|+  |.+.++....    
T Consensus        77 ~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~~--G~l~vtd~~~~~~~  154 (319)
T d2dg1a1          77 FVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSK--GGFYFTDFRGYSTN  154 (319)
T ss_dssp             EECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTT--SCEEEEECCCBTTB
T ss_pred             EeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCceeeeeccCCCcccCCcceeEEec--cceeeccccccccc
Confidence            33455678899999999988876543    2344555554443333311 11345788999998  7877764321    


Q ss_pred             --CcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccc
Q 004468          117 --AEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECR  194 (751)
Q Consensus       117 --g~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~  194 (751)
                        +.+..++...           ..+..+...-...+.|+|+|++..++++-+..+.|..||+.......     .....
T Consensus       155 ~~g~v~~~~~dg-----------~~~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~-----~~~~~  218 (319)
T d2dg1a1         155 PLGGVYYVSPDF-----------RTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTI-----QPFGA  218 (319)
T ss_dssp             CCEEEEEECTTS-----------CCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSE-----EEEEE
T ss_pred             CcceeEEEeccc-----------ceeEEEeeccceeeeeeeccccceEEEecccCCceEEEEEcCCCcee-----ccccc
Confidence              2244444332           12333333334567899999655567777888999999987542110     00000


Q ss_pred             eEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCcccccccccccc
Q 004468          195 NILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSE  274 (751)
Q Consensus       195 ~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (751)
                      ......            ........+++.+ ++++.++....+.|.+||. .++.+..+..            |...  
T Consensus       219 ~~~~~~------------~~~~~PdGl~vD~-~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~------------P~~~--  270 (319)
T d2dg1a1         219 TIPYYF------------TGHEGPDSCCIDS-DDNLYVAMYGQGRVLVFNK-RGYPIGQILI------------PGRD--  270 (319)
T ss_dssp             EEEEEC------------CSSSEEEEEEEBT-TCCEEEEEETTTEEEEECT-TSCEEEEEEC------------TTGG--
T ss_pred             eeeecc------------CCccceeeeeEcC-CCCEEEEEcCCCEEEEECC-CCcEEEEEeC------------CCcC--
Confidence            000000            0112345789998 4788888888999999996 4554433321            1110  


Q ss_pred             CCccccceEEEEEcCCCCEEEEEeCC------CcEEEEECC
Q 004468          275 HGRSSLHLTHVTFSPNGEEVLLSYSG------EHVYLMDVN  309 (751)
Q Consensus       275 ~g~~~~~vt~v~fspdg~~Ll~~s~d------~~I~lwdl~  309 (751)
                      .++.. .+++++|.+++..+++...+      +.|+..+..
T Consensus       271 ~~~~~-~~~~~~~~~~~~~~~~t~~~~~~~~~g~l~~~~~~  310 (319)
T d2dg1a1         271 EGHML-RSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNGF  310 (319)
T ss_dssp             GTCSC-BCCEEEECTTSCEEEEEEECGGGTCCEEEEEEECS
T ss_pred             CCcCc-eeeeEEEeCCCCEEEEEcCCCCcCCceeEEEEeCC
Confidence            11111 37899999988877776542      345555543

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.75  E-value=4.2e-05  Score=71.31  Aligned_cols=101  Identities=20%  Similarity=0.199  Sum_probs=88.8

Q ss_pred             hhHHHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCc
Q 004468          362 KCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSF  441 (751)
Q Consensus       362 ~~~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~  441 (751)
                      ....|.+.|+..+..|. |..|+..|..+|...+..      ..+|.++|.++++.+-   .-.|+.++.+|+.++|...
T Consensus         3 ~a~~l~~~Gn~~~~~g~-~~~Ai~~~~kal~~~p~~------~~~~~~lg~~y~~~~~---~~~Ai~~~~~al~l~p~~~   72 (201)
T d2c2la1           3 SAQELKEQGNRLFVGRK-YPEAAACYGRAITRNPLV------AVYYTNRALCYLKMQQ---PEQALADCRRALELDGQSV   72 (201)
T ss_dssp             CHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCSCC------HHHHHHHHHHHHHTTC---HHHHHHHHHHHTTSCTTCH
T ss_pred             hHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCC------HHHHHhHHHHHhhhhh---hhhhhHHHHHHHHhCCCcH
Confidence            45678899999999998 999999999999977654      5689999999988775   5579999999999999999


Q ss_pred             chHHHHHHHHHHhcchHHHHHHHHHhcccCC
Q 004468          442 RAHLYMSEALEQLCKYKEALDFAIAAQCLDP  472 (751)
Q Consensus       442 ~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p  472 (751)
                      +++++++.++..++++.+|+.++.......|
T Consensus        73 ~a~~~lg~~~~~l~~~~~A~~~~~~al~l~p  103 (201)
T d2c2la1          73 KAHFFLGQCQLEMESYDEAIANLQRAYSLAK  103 (201)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence            9999999999999999999999887765544

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.61  E-value=0.0065  Score=60.02  Aligned_cols=195  Identities=11%  Similarity=0.120  Sum_probs=120.1

Q ss_pred             CCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccc---CCcceEEEEEecCCCCcEEEEEECC----CcEEEE
Q 004468           50 QGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETG---HSANVFCTKFVPETSDELVVSGAGD----AEVRLF  122 (751)
Q Consensus        50 ~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~---h~~~V~~v~fsp~s~~~~l~sgs~D----g~V~vw  122 (751)
                      ...+.++++.++|.+++++ .+ -|.++|..+++........   ....++.+.+.|+  |.+.++....    +.-.+|
T Consensus        58 ~~~~~~i~~~~dg~l~va~-~~-gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~--G~iw~~~~~~~~~~~~g~l~  133 (295)
T d2ghsa1          58 PFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPS--GALWIGTMGRKAETGAGSIY  133 (295)
T ss_dssp             SSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTT--SCEEEEEEETTCCTTCEEEE
T ss_pred             CCCcEEEEEecCCCEEEEE-eC-ccEEeecccceeeEEeeeecCCCcccceeeEECCC--CCEEEEeccccccccceeEe
Confidence            4578899999999877754 44 5889999988754433111   1235788999998  7877765432    234556


Q ss_pred             ECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEeccc
Q 004468          123 NLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRC  202 (751)
Q Consensus       123 d~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~  202 (751)
                      .+..+          + +..+...-...+.++|++++..++++-+..+.|..|++.......      ......+.+   
T Consensus       134 ~~~~g----------~-~~~~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~------~~~~~~~~~---  193 (295)
T d2ghsa1         134 HVAKG----------K-VTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLP------TGKAEVFID---  193 (295)
T ss_dssp             EEETT----------E-EEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCB------SSCCEEEEE---
T ss_pred             eecCC----------c-EEEEeeccCCcceeeecCCCceEEEeecccceeeEeeeccccccc------ccceEEEec---
Confidence            55432          1 222222233457899999766677888888999999875432110      001112221   


Q ss_pred             CceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccce
Q 004468          203 GAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHL  282 (751)
Q Consensus       203 ~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v  282 (751)
                              ..........+++..+ +++.++.-..+.|..||.. ++.+..+..            |         ...+
T Consensus       194 --------~~~~~g~pdG~~vD~~-GnlWva~~~~g~V~~~dp~-G~~~~~i~l------------P---------~~~~  242 (295)
T d2ghsa1         194 --------STGIKGGMDGSVCDAE-GHIWNARWGEGAVDRYDTD-GNHIARYEV------------P---------GKQT  242 (295)
T ss_dssp             --------CTTSSSEEEEEEECTT-SCEEEEEETTTEEEEECTT-CCEEEEEEC------------S---------CSBE
T ss_pred             --------cCcccccccceEEcCC-CCEEeeeeCCCceEEecCC-CcEeeEecC------------C---------CCce
Confidence                    1122345677888884 6777777778899999964 443332211            0         1138


Q ss_pred             EEEEEc-CCCCEEEEEeC
Q 004468          283 THVTFS-PNGEEVLLSYS  299 (751)
Q Consensus       283 t~v~fs-pdg~~Ll~~s~  299 (751)
                      |+++|- ||.+.|++.+.
T Consensus       243 T~~~FGG~d~~~LyvTta  260 (295)
T d2ghsa1         243 TCPAFIGPDASRLLVTSA  260 (295)
T ss_dssp             EEEEEESTTSCEEEEEEB
T ss_pred             EEEEEeCCCCCEEEEEEC
Confidence            999996 78887776543

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.61  E-value=0.0032  Score=61.69  Aligned_cols=161  Identities=12%  Similarity=0.132  Sum_probs=110.4

Q ss_pred             CCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEe-cccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCC
Q 004468           49 HQGCVNAISWNSKGSLLISGSDDTHINVWSYSSRKLLHSI-ETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRF  127 (751)
Q Consensus        49 H~~~V~~l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l-~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~  127 (751)
                      +......+++.++|.++++....+.+.+++.. ++.+..+ ...+......+++.++  +.++++....+.|++||... 
T Consensus       112 ~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~i~~d~~--g~i~v~d~~~~~V~~~d~~G-  187 (279)
T d1q7fa_         112 ILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDK--QEIFISDNRAHCVKVFNYEG-  187 (279)
T ss_dssp             TCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSS--SEEEEEEGGGTEEEEEETTC-
T ss_pred             cccccceeccccCCcEEEEeeccceeeEeccC-Cceeecccccccccccceeeeccc--eeEEeeeccccceeeeecCC-
Confidence            34556788899999988888777888888864 5555554 2346677888999888  78888888899999999763 


Q ss_pred             CCCCCCCCCCCCceee--cccCCceeEEEEecCCCCEEEEEeC-CCcEEEEecCCCCCCCCCCCCCCccceEEEecccCc
Q 004468          128 SGRGLDDNAITPSALY--QCHTRRVKKLAVEVGNPHVVWSASE-DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGA  204 (751)
Q Consensus       128 ~~~~~~~~~~~~~~~~--~~h~~~V~~l~~sp~~~~~l~s~s~-Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~  204 (751)
                                +.+..+  .++......|++.+ +++++++-.. ++.|.+|+.. ++.              +..+..  
T Consensus       188 ----------~~~~~~g~~g~~~~P~giavD~-~G~i~Vad~~~~~~v~~f~~~-G~~--------------~~~~~~--  239 (279)
T d1q7fa_         188 ----------QYLRQIGGEGITNYPIGVGINS-NGEILIADNHNNFNLTIFTQD-GQL--------------ISALES--  239 (279)
T ss_dssp             ----------CEEEEESCTTTSCSEEEEEECT-TCCEEEEECSSSCEEEEECTT-SCE--------------EEEEEE--
T ss_pred             ----------ceeeeecccccccCCccccccc-CCeEEEEECCCCcEEEEECCC-CCE--------------EEEEeC--
Confidence                      223343  23455678999999 5577776543 4578898843 321              111000  


Q ss_pred             eecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCC
Q 004468          205 KRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPP  250 (751)
Q Consensus       205 ~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~  250 (751)
                             .........+++.|+ +. |+++..+..|++|......+
T Consensus       240 -------~~~~~~p~~vav~~d-G~-l~V~~~n~~v~~fr~~~~~~  276 (279)
T d1q7fa_         240 -------KVKHAQCFDVALMDD-GS-VVLASKDYRLYIYRYVQLAP  276 (279)
T ss_dssp             -------SSCCSCEEEEEEETT-TE-EEEEETTTEEEEEECSCCCC
T ss_pred             -------CCCCCCEeEEEEeCC-Cc-EEEEeCCCeEEEEEeeeecC
Confidence                   011234678899995 55 55566889999999886654

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.60  E-value=0.00012  Score=66.51  Aligned_cols=121  Identities=21%  Similarity=0.193  Sum_probs=92.7

Q ss_pred             HHHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCC----------CCchhhhhHhHHHHHhhcccccchhhhHHHhhHHH
Q 004468          364 RMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGI----------GPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNA  433 (751)
Q Consensus       364 ~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~----------~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a  433 (751)
                      ..+...++..+..+. |..|++.|+++|.......          ..+....++.|||.++++.+-   -..|+.+|.++
T Consensus        28 ~~~~~~~~~~~~~~~-y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~---~~~Ai~~~~~a  103 (169)
T d1ihga1          28 EDLKNIGNTFFKSQN-WEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSD---WQGAVDSCLEA  103 (169)
T ss_dssp             HHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCC-HHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcc---cchhhhhhhhh
Confidence            445566777777777 8899999998875322110          011123367889999888764   56799999999


Q ss_pred             hcCCCCCcchHHHHHHHHHHhcchHHHHHHHHHhcccCCCChhhhHHHHHHHHHH
Q 004468          434 RRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKKHI  488 (751)
Q Consensus       434 ~~~~~~~~~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~  488 (751)
                      +.++|.+++++++++.++..++++.+|+.++.......|........+..+...+
T Consensus       104 l~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l  158 (169)
T d1ihga1         104 LEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKI  158 (169)
T ss_dssp             HTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999998776555555554444

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.43  E-value=0.0021  Score=68.23  Aligned_cols=113  Identities=8%  Similarity=0.051  Sum_probs=73.3

Q ss_pred             EEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEec--ccCCcceEEEEEecCCCCcEEEEEE---------CCCcEEEEEC
Q 004468           56 ISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIE--TGHSANVFCTKFVPETSDELVVSGA---------GDAEVRLFNL  124 (751)
Q Consensus        56 l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~--~~h~~~V~~v~fsp~s~~~~l~sgs---------~Dg~V~vwd~  124 (751)
                      ..|.+++.++.. ..||.|.+||+.+++....+.  .-..-.+....|+|+  +++|+...         ..+.+.++|+
T Consensus        22 ~~W~~~~~~~~~-~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD--~~~vl~~~~~~~~~r~s~~~~~~i~d~   98 (465)
T d1xfda1          22 AKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPD--REYALFSYNVEPIYQHSYTGYYVLSKI   98 (465)
T ss_dssp             CCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTT--SSEEEEEESCCCCSSSCCCSEEEEEES
T ss_pred             CEEeCCCcEEEE-eCCCcEEEEECCCCCEEEEEcCccccccccceeEECCC--CCeEEEEEcccceeEeeccccEEEEEc
Confidence            368888876654 467899999998776533331  123346788899999  78777653         3567889999


Q ss_pred             CCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEEecCCCC
Q 004468          125 SRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQHDFRQGS  181 (751)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~  181 (751)
                      .++..        .++.........+....|||++ +.||-.. ++.|.+.+..++.
T Consensus        99 ~~~~~--------~~l~~~~~~~~~l~~~~wSPDG-~~iafv~-~~nl~~~~~~~~~  145 (465)
T d1xfda1          99 PHGDP--------QSLDPPEVSNAKLQYAGWGPKG-QQLIFIF-ENNIYYCAHVGKQ  145 (465)
T ss_dssp             SSCCC--------EECCCTTCCSCCCSBCCBCSST-TCEEEEE-TTEEEEESSSSSC
T ss_pred             cCCce--------eeccCccCCccccceeeeccCC-ceEEEEe-cceEEEEecCCCc
Confidence            86532        1222223334456678899954 5554443 5678888876654

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.16  E-value=0.053  Score=53.10  Aligned_cols=226  Identities=11%  Similarity=-0.011  Sum_probs=128.9

Q ss_pred             EEEECC-CCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCC
Q 004468           55 AISWNS-KGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLD  133 (751)
Q Consensus        55 ~l~~s~-dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~  133 (751)
                      ...|.+ ++.++.+=-..+.|.-||..+++... +  .....+.++++.++  |.++++ +.+ -|.++|..++.-    
T Consensus        22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~-~--~~~~~~~~i~~~~d--g~l~va-~~~-gl~~~d~~tg~~----   90 (295)
T d2ghsa1          22 GPTFDPASGTAWWFNILERELHELHLASGRKTV-H--ALPFMGSALAKISD--SKQLIA-SDD-GLFLRDTATGVL----   90 (295)
T ss_dssp             EEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE-E--ECSSCEEEEEEEET--TEEEEE-ETT-EEEEEETTTCCE----
T ss_pred             CCeEECCCCEEEEEECCCCEEEEEECCCCeEEE-E--ECCCCcEEEEEecC--CCEEEE-EeC-ccEEeeccccee----
Confidence            556886 45555555567889999998876542 2  12456889999888  666665 444 588899886421    


Q ss_pred             CCCCCCceeecc--cCCceeEEEEecCCCCEEEEEeCC----CcEEEEecCCCCCCCCCCCCCCccceEEEecccCceec
Q 004468          134 DNAITPSALYQC--HTRRVKKLAVEVGNPHVVWSASED----GTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRS  207 (751)
Q Consensus       134 ~~~~~~~~~~~~--h~~~V~~l~~sp~~~~~l~s~s~D----g~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  207 (751)
                          +.+.....  ....++.+.+.| ++.+.++...+    +.-.+|.+..++                       ...
T Consensus        91 ----~~l~~~~~~~~~~~~nd~~vd~-~G~iw~~~~~~~~~~~~g~l~~~~~g~-----------------------~~~  142 (295)
T d2ghsa1          91 ----TLHAELESDLPGNRSNDGRMHP-SGALWIGTMGRKAETGAGSIYHVAKGK-----------------------VTK  142 (295)
T ss_dssp             ----EEEECSSTTCTTEEEEEEEECT-TSCEEEEEEETTCCTTCEEEEEEETTE-----------------------EEE
T ss_pred             ----eEEeeeecCCCcccceeeEECC-CCCEEEEeccccccccceeEeeecCCc-----------------------EEE
Confidence                11111111  123578888888 55655443221    122333333221                       111


Q ss_pred             ccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEE
Q 004468          208 LADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTF  287 (751)
Q Consensus       208 ~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~f  287 (751)
                      +.   ......+.++|++++..++++-+..+.|..|++........-        ....+..  .  .+. ......+++
T Consensus       143 ~~---~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~--------~~~~~~~--~--~~~-~g~pdG~~v  206 (295)
T d2ghsa1         143 LF---ADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTG--------KAEVFID--S--TGI-KGGMDGSVC  206 (295)
T ss_dssp             EE---EEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSS--------CCEEEEE--C--TTS-SSEEEEEEE
T ss_pred             Ee---eccCCcceeeecCCCceEEEeecccceeeEeeeccccccccc--------ceEEEec--c--Ccc-cccccceEE
Confidence            11   012245678999975556677777889999987532111000        0001100  0  011 113678999


Q ss_pred             cCCCCEEEEEeCCCcEEEEECCCCCcceeeeecCCCceeEEeC-CCCCCc
Q 004468          288 SPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFT-PTLNGL  336 (751)
Q Consensus       288 spdg~~Ll~~s~d~~I~lwdl~~~~~~~~~~~~~~~~~~~~~s-p~~~~~  336 (751)
                      ..+|+..++....+.|..||... +...........+..++|- |+.+.+
T Consensus       207 D~~GnlWva~~~~g~V~~~dp~G-~~~~~i~lP~~~~T~~~FGG~d~~~L  255 (295)
T d2ghsa1         207 DAEGHIWNARWGEGAVDRYDTDG-NHIARYEVPGKQTTCPAFIGPDASRL  255 (295)
T ss_dssp             CTTSCEEEEEETTTEEEEECTTC-CEEEEEECSCSBEEEEEEESTTSCEE
T ss_pred             cCCCCEEeeeeCCCceEEecCCC-cEeeEecCCCCceEEEEEeCCCCCEE
Confidence            99999888888889999999654 4333333334456677775 454444

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.11  E-value=0.01  Score=57.02  Aligned_cols=100  Identities=10%  Similarity=0.058  Sum_probs=60.0

Q ss_pred             EECCC--CCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEE-CCC-----cEEEEECCCCC
Q 004468           57 SWNSK--GSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGA-GDA-----EVRLFNLSRFS  128 (751)
Q Consensus        57 ~~s~d--g~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs-~Dg-----~V~vwd~~~~~  128 (751)
                      ..+||  |+.+|-.+. +.|.+.|+.+++.. .+ +.+.+.+...+|||+  |+.||-.. .++     .|.+++...+.
T Consensus         5 ~~sPdi~G~~v~f~~~-~dl~~~d~~~g~~~-~L-t~~~~~~~~p~~SPD--G~~iaf~~~~~~~~~~~~i~~~~~~~g~   79 (281)
T d1k32a2           5 LLNPDIHGDRIIFVCC-DDLWEHDLKSGSTR-KI-VSNLGVINNARFFPD--GRKIAIRVMRGSSLNTADLYFYNGENGE   79 (281)
T ss_dssp             CEEEEEETTEEEEEET-TEEEEEETTTCCEE-EE-ECSSSEEEEEEECTT--SSEEEEEEEESTTCCEEEEEEEETTTTE
T ss_pred             ccCCCCCCCEEEEEeC-CcEEEEECCCCCEE-EE-ecCCCcccCEEECCC--CCEEEEEEeeCCCCCceEEEEEEecCCc
Confidence            45788  998886654 56888899877654 45 567788999999999  78877443 222     35666665432


Q ss_pred             CCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEE
Q 004468          129 GRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSA  166 (751)
Q Consensus       129 ~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~  166 (751)
                      ...+..    ...........+....|+| +++.|+..
T Consensus        80 ~~~lt~----~~~~~~~~~~~~~~~~~sp-dg~~l~~~  112 (281)
T d1k32a2          80 IKRITY----FSGKSTGRRMFTDVAGFDP-DGNLIIST  112 (281)
T ss_dssp             EEECCC----CCEEEETTEECSEEEEECT-TCCEEEEE
T ss_pred             eEEeee----cCCCccCccccccccccCC-CCCEEEEE
Confidence            111000    0000112233456788999 55655543

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.02  E-value=0.012  Score=62.07  Aligned_cols=192  Identities=7%  Similarity=-0.019  Sum_probs=104.4

Q ss_pred             cEEEEEECCCCCEEEEEe---------CCCcEEEEeCCCCeEEEEe-cccCCcceEEEEEecCCCCcEEEEEECCCcEEE
Q 004468           52 CVNAISWNSKGSLLISGS---------DDTHINVWSYSSRKLLHSI-ETGHSANVFCTKFVPETSDELVVSGAGDAEVRL  121 (751)
Q Consensus        52 ~V~~l~~s~dg~~LaSgs---------~Dg~I~IWd~~~~~~~~~l-~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~v  121 (751)
                      .+....|||||++|+.+.         ..+.+.|+|+.++...... .......+...+|+|+  |+.||-.. ++.|.+
T Consensus        62 ~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPD--G~~iafv~-~~nl~~  138 (465)
T d1xfda1          62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPK--GQQLIFIF-ENNIYY  138 (465)
T ss_dssp             TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSS--TTCEEEEE-TTEEEE
T ss_pred             ccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCccccceeeeccC--CceEEEEe-cceEEE
Confidence            566788999999888764         3567889999877643321 1233455677899999  77777654 577888


Q ss_pred             EECCCCCCCCCCCCCCCCceeecccCC---------ceeEEEEecCCCCEEEEEe-CCCcEEEEecCCCC--CC------
Q 004468          122 FNLSRFSGRGLDDNAITPSALYQCHTR---------RVKKLAVEVGNPHVVWSAS-EDGTLRQHDFRQGS--SC------  183 (751)
Q Consensus       122 wd~~~~~~~~~~~~~~~~~~~~~~h~~---------~V~~l~~sp~~~~~l~s~s-~Dg~I~iwDlr~~~--~~------  183 (751)
                      .+...+....+.... ..-..+.+..+         .-..+-||| +++.|+... .+..|..+.+....  ..      
T Consensus       139 ~~~~~~~~~~lt~~g-~~~~i~nG~~d~vyeee~~~~~~a~~WSP-Dgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~  216 (465)
T d1xfda1         139 CAHVGKQAIRVVSTG-KEGVIYNGLSDWLYEEEILKTHIAHWWSP-DGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPY  216 (465)
T ss_dssp             ESSSSSCCEEEECCC-BTTTEEEEECCHHHHHTTSSSSEEEEECT-TSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEE
T ss_pred             EecCCCceEEEeccc-CcceeeccccchhhhhhhccccceEEECC-CCCeEEEEEecccccceeecccccccccceeeee
Confidence            877643221110000 00011222211         124678999 556666554 45556666543211  10      


Q ss_pred             --CCCCCCCCccceEEEecccCceecccCCCC----CccceEEEEEeCCCCcEEEEEeC-C---CeEEEEeCCCCC
Q 004468          184 --PPAGSSHQECRNILLDLRCGAKRSLADPPK----QTLSLKSCDISSTRPHLLLVGGS-D---AFARLYDRRMLP  249 (751)
Q Consensus       184 --~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~----~~~~v~~i~~sp~~~~~l~sgs~-D---~~IriwD~~~~~  249 (751)
                        +..+.........++++..+........+.    ....+..+.|+|+ +++++.... +   ..|.++|..+++
T Consensus       217 ~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d-~~~~~~~~nR~q~~~~i~~~d~~tg~  291 (465)
T d1xfda1         217 HYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATS-TKVAVTWLNRAQNVSILTLCDATTGV  291 (465)
T ss_dssp             ECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSS-SEEEEEEEETTSCEEEEEEEETTTCC
T ss_pred             eccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCC-CeEEEEEEccccccceEEEEcCCCCc
Confidence              111111122234456665544332222221    2234778899985 565554332 2   357788888765

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.98  E-value=0.0026  Score=54.31  Aligned_cols=101  Identities=12%  Similarity=0.103  Sum_probs=80.3

Q ss_pred             hHHHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcc
Q 004468          363 CRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFR  442 (751)
Q Consensus       363 ~~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~  442 (751)
                      .......++..+..++ |..|+..|+.+|...+..      ..++.+++.++...+   +...|+.+|..|+.++|.+..
T Consensus         4 a~~~k~~G~~~~~~~~-y~~Ai~~y~~al~~~p~~------~~~~~~~a~~~~~~~---~~~~A~~~~~~al~l~~~~~~   73 (128)
T d1elra_           4 ALKEKELGNDAYKKKD-FDTALKHYDKAKELDPTN------MTYITNQAAVYFEKG---DYNKCRELCEKAIEVGRENRE   73 (128)
T ss_dssp             HHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCccc------HHHHHhHHHHHHHcC---chHHHHHHHHHHHHhCcccHH
Confidence            4566778888888888 999999999999977654      458899999999875   567899999999999999887


Q ss_pred             hHHH-------HHHHHHHhcchHHHHHHHHHhcccCCC
Q 004468          443 AHLY-------MSEALEQLCKYKEALDFAIAAQCLDPS  473 (751)
Q Consensus       443 a~~~-------~~~~l~~l~~~~~a~~~~~~~~~~~p~  473 (751)
                      ++..       +..++..++.+.+|+.+........+.
T Consensus        74 ~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~  111 (128)
T d1elra_          74 DYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT  111 (128)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Confidence            5554       555666777888898888776655553

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.93  E-value=0.085  Score=50.60  Aligned_cols=216  Identities=8%  Similarity=0.012  Sum_probs=128.9

Q ss_pred             cccccEEeccCCCcEEEEEECCCCCEEEEE-eCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCC
Q 004468           39 RLSQERELEGHQGCVNAISWNSKGSLLISG-SDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA  117 (751)
Q Consensus        39 ~~~~~~~L~gH~~~V~~l~~s~dg~~LaSg-s~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg  117 (751)
                      .......+..+...|.+|+|.+..+.|.-. ..++.|...++........+ ..-...+.++++..-+ +.+.++-...+
T Consensus        24 ~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~-~~~~~~p~~iAvD~~~-~~lY~~d~~~~  101 (263)
T d1npea_          24 KTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTII-RQDLGSPEGIALDHLG-RTIFWTDSQLD  101 (263)
T ss_dssp             GGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEE-CTTCCCEEEEEEETTT-TEEEEEETTTT
T ss_pred             ccccccccccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEE-EeccccccEEEEeccC-CeEEEeccCCC
Confidence            333444555666678899999877766554 45677888887654443333 3334568899998763 45555666778


Q ss_pred             cEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCCcEEEE--ecCCCCCCCCCCCCCCccce
Q 004468          118 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDGTLRQH--DFRQGSSCPPAGSSHQECRN  195 (751)
Q Consensus       118 ~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg~I~iw--Dlr~~~~~~~~~~~~~~~~~  195 (751)
                      .|.+.++....          ....+...-..+..+++.|..+.++++-...+..+|+  ++.....            .
T Consensus       102 ~I~~~~~dg~~----------~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~------------~  159 (263)
T d1npea_         102 RIEVAKMDGTQ----------RRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR------------R  159 (263)
T ss_dssp             EEEEEETTSCS----------CEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC------------E
T ss_pred             EEEEEecCCce----------EEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCc------------e
Confidence            99999987431          1122233345688999999888888876543443344  4433221            1


Q ss_pred             EEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccC
Q 004468          196 ILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEH  275 (751)
Q Consensus       196 ~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (751)
                      .+..             ........+++.+.+.+++.+-...+.|...|+......              ...      .
T Consensus       160 ~i~~-------------~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~--------------~v~------~  206 (263)
T d1npea_         160 ILAQ-------------DNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRR--------------KVL------E  206 (263)
T ss_dssp             EEEC-------------TTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEE--------------EEE------E
T ss_pred             eeee-------------ecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeE--------------EEE------C
Confidence            1110             012345789999865555566567788888888643210              000      0


Q ss_pred             CccccceEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcc
Q 004468          276 GRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNHAGGR  314 (751)
Q Consensus       276 g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~  314 (751)
                      +..  ...+|++. ++....+-...+.|...|..+++..
T Consensus       207 ~~~--~P~~lav~-~~~lYwtd~~~~~I~~~~~~~g~~~  242 (263)
T d1npea_         207 GLQ--YPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEM  242 (263)
T ss_dssp             CCC--SEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEE
T ss_pred             CCC--CcEEEEEE-CCEEEEEECCCCEEEEEECCCCccc
Confidence            111  24567775 3444445556789999999886433

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.58  E-value=0.0059  Score=51.54  Aligned_cols=100  Identities=12%  Similarity=0.046  Sum_probs=81.1

Q ss_pred             HHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCc--chHHHHH
Q 004468          371 RNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSF--RAHLYMS  448 (751)
Q Consensus       371 ~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~--~a~~~~~  448 (751)
                      +..+..+. +..|.+.|..++...+..      ..++.|.|.++++..-.+|.-.|+.-..+++.++|...  .+++.++
T Consensus         7 n~~~~~~~-l~~Ae~~Y~~aL~~~p~~------~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg   79 (122)
T d1nzna_           7 NELVSVED-LLKFEKKFQSEKAAGSVS------KSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLA   79 (122)
T ss_dssp             HHHHHHHH-HHHHHHHHHHHHHHSCCC------HHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHH
T ss_pred             HHhcCHHH-HHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHH
Confidence            33333343 778999999999977665      45677888888877666777889999999999987654  4889999


Q ss_pred             HHHHHhcchHHHHHHHHHhcccCCCChhh
Q 004468          449 EALEQLCKYKEALDFAIAAQCLDPSNSVM  477 (751)
Q Consensus       449 ~~l~~l~~~~~a~~~~~~~~~~~p~~~~~  477 (751)
                      .|+..+|++.+|..++..+...-|.+...
T Consensus        80 ~~y~~~g~~~~A~~~~~~aL~~~P~~~~A  108 (122)
T d1nzna_          80 VGNYRLKEYEKALKYVRGLLQTEPQNNQA  108 (122)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHhhhHHHHHHHHHHHHhCcCCHHH
Confidence            99999999999999999999999987643

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=96.15  E-value=0.0035  Score=55.42  Aligned_cols=105  Identities=15%  Similarity=0.011  Sum_probs=79.3

Q ss_pred             HHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCc------hhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCC
Q 004468          365 MLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPM------LRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDS  438 (751)
Q Consensus       365 ~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~------~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~  438 (751)
                      .+...++..+..|. |..||..|.++|...+......      ....+|.|++.++.+.   |+...|+.++..++.+.+
T Consensus        11 ~~l~~g~~~~~~g~-y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~l---g~~~~A~~~~~~al~~~~   86 (156)
T d2hr2a1          11 LALSDAQRQLVAGE-YDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGL---RSFDEALHSADKALHYFN   86 (156)
T ss_dssp             HHHHHHHHHHHHTC-HHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCC-HHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHc---CccchhhHhhhhhhhccc
Confidence            34455777778888 9999999999998776643311      1234788999998775   446778999999887644


Q ss_pred             C-----------CcchHHHHHHHHHHhcchHHHHHHHHHhcccCCC
Q 004468          439 S-----------SFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPS  473 (751)
Q Consensus       439 ~-----------~~~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~  473 (751)
                      .           ..+++++++.++..+|++.+|+.++.+....+|.
T Consensus        87 ~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~  132 (156)
T d2hr2a1          87 RRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE  132 (156)
T ss_dssp             HHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            2           3457899999999999999999998887666553

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=95.68  E-value=0.047  Score=51.61  Aligned_cols=105  Identities=18%  Similarity=0.019  Sum_probs=87.4

Q ss_pred             hhHHHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCc
Q 004468          362 KCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSF  441 (751)
Q Consensus       362 ~~~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~  441 (751)
                      ....+...+.-....|. +..|+..|..+|...++.      ...|.++|.++...+-   .-.|+....+++.++|.+.
T Consensus        36 ~a~~~~~~G~~y~~~g~-~~~A~~~~~~al~l~p~~------~~a~~~lg~~~~~~g~---~~~A~~~~~~al~~~p~~~  105 (259)
T d1xnfa_          36 RAQLLYERGVLYDSLGL-RALARNDFSQALAIRPDM------PEVFNYLGIYLTQAGN---FDAAYEAFDSVLELDPTYN  105 (259)
T ss_dssp             HHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTTCT
T ss_pred             HHHHHHHHHHHHHHCCC-HHHHHHHHHHhhccCCCC------HHHHhhhchHHHHHHH---HHHhhhhhhHHHHHHhhhh
Confidence            34455566666677777 999999999999977665      4567788888887664   4568999999999999999


Q ss_pred             chHHHHHHHHHHhcchHHHHHHHHHhcccCCCChh
Q 004468          442 RAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSV  476 (751)
Q Consensus       442 ~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~~  476 (751)
                      .+++.++.++..+|++.+|...+..+....|....
T Consensus       106 ~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~  140 (259)
T d1xnfa_         106 YAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPF  140 (259)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             hhHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHH
Confidence            99999999999999999999999999888887553

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=95.47  E-value=0.033  Score=45.72  Aligned_cols=90  Identities=16%  Similarity=0.027  Sum_probs=72.4

Q ss_pred             HHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcchHHHH
Q 004468          368 EIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYM  447 (751)
Q Consensus       368 ~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~a~~~~  447 (751)
                      ..+......|. +..|+..+.++|...+..      ...|..++.++...+   +...|+..-.++++++|.+..+++.+
T Consensus        21 ~~g~~~~~~g~-~~~A~~~~~~al~~~p~~------~~a~~~lg~~~~~~~---~~~~A~~~~~~al~~~p~~~~a~~~l   90 (112)
T d1hxia_          21 EEGLSMLKLAN-LAEAALAFEAVCQKEPER------EEAWRSLGLTQAENE---KDGLAIIALNHARMLDPKDIAVHAAL   90 (112)
T ss_dssp             HHHHHHHHTTC-HHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHhh-hHHHHHHHhhhccccccc------chhhhhhhhhhhhhh---hHHHhhcccccccccccccccchHHH
Confidence            45566667777 889999999999877654      456777888776555   35567888888999999999999999


Q ss_pred             HHHHHHhcchHHHHHHHHHh
Q 004468          448 SEALEQLCKYKEALDFAIAA  467 (751)
Q Consensus       448 ~~~l~~l~~~~~a~~~~~~~  467 (751)
                      +.++...|.+.+|+.+++++
T Consensus        91 a~~y~~~g~~~~A~~~l~~~  110 (112)
T d1hxia_          91 AVSHTNEHNANAALASLRAW  110 (112)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHH
Confidence            99999999999999888654

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.22  E-value=1.3  Score=41.79  Aligned_cols=228  Identities=7%  Similarity=-0.019  Sum_probs=130.0

Q ss_pred             CCCcEEEEEECCCCCEEEEEe-CCCcEEEEeCCCCe---EEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEEC
Q 004468           49 HQGCVNAISWNSKGSLLISGS-DDTHINVWSYSSRK---LLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNL  124 (751)
Q Consensus        49 H~~~V~~l~~s~dg~~LaSgs-~Dg~I~IWd~~~~~---~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~  124 (751)
                      ....+.+|+|++..+.|.-.. ..+.|.--++....   ....+.......+..+++-+.+ +.+.++-...+.|.+.++
T Consensus        28 ~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~-~~lY~~d~~~~~I~v~~~  106 (266)
T d1ijqa1          28 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH-SNIYWTDSVLGTVSVADT  106 (266)
T ss_dssp             SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTT-TEEEEEETTTTEEEEEET
T ss_pred             CCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeecc-ceEEEEecCCCEEEeEec
Confidence            445677999998777665443 55666666654211   1222213334557788887764 566666677789999998


Q ss_pred             CCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEe-CCCcEEEEecCCCCCCCCCCCCCCccceEEEecccC
Q 004468          125 SRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSAS-EDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCG  203 (751)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s-~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~  203 (751)
                      ...          .....+.........+++.|..+.++++.. ..+.|...++....            ...+..    
T Consensus       107 ~g~----------~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~------------~~~l~~----  160 (266)
T d1ijqa1         107 KGV----------KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD------------IYSLVT----  160 (266)
T ss_dssp             TSS----------SEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC------------EEEEEC----
T ss_pred             CCc----------eEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCc------------eecccc----
Confidence            743          112334444567889999997778888753 34456666654432            111111    


Q ss_pred             ceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceE
Q 004468          204 AKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLT  283 (751)
Q Consensus       204 ~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt  283 (751)
                               ........+++.+.+.++..+-...+.|...|+.........             .     .... .....
T Consensus       161 ---------~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~-------------~-----~~~~-~~~p~  212 (266)
T d1ijqa1         161 ---------ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTIL-------------E-----DEKR-LAHPF  212 (266)
T ss_dssp             ---------SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE-------------E-----CTTT-TSSEE
T ss_pred             ---------cccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEE-------------e-----CCCc-ccccE
Confidence                     012346789999865556666677789998888643211000             0     0000 11255


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECCCCCcceeeeec-CCCceeEEeCCC
Q 004468          284 HVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTV-GDASKIMSFTPT  332 (751)
Q Consensus       284 ~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~~~~~-~~~~~~~~~sp~  332 (751)
                      ++++. ++....+-..++.|+..+..++......... ..+.....++|.
T Consensus       213 ~lav~-~~~ly~td~~~~~I~~~~~~~g~~~~~~~~~~~~p~~i~v~~~~  261 (266)
T d1ijqa1         213 SLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLFHNL  261 (266)
T ss_dssp             EEEEE-TTEEEEEETTTTEEEEEETTTCCCCEEEECSCSCCCCEEEESGG
T ss_pred             EEEEE-CCEEEEEECCCCeEEEEECCCCcceEEEEcCCCCceEEEEECCc
Confidence            67776 3344444456889999998886544443322 333344445553

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.18  E-value=0.027  Score=51.34  Aligned_cols=97  Identities=13%  Similarity=-0.054  Sum_probs=75.4

Q ss_pred             hHHHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcc
Q 004468          363 CRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFR  442 (751)
Q Consensus       363 ~~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~  442 (751)
                      ...|...+...+..++ |..|+..|.++..       +  ....+.|++..+...+   +.-.|+.++.+|++++|+++.
T Consensus         5 ~~~l~~~g~~~~~~~d-~~~Al~~~~~i~~-------~--~~~~~~nlG~~~~~~g---~~~~A~~~~~kAl~ldp~~~~   71 (192)
T d1hh8a_           5 AISLWNEGVLAADKKD-WKGALDAFSAVQD-------P--HSRICFNIGCMYTILK---NMTEAEKAFTRSINRDKHLAV   71 (192)
T ss_dssp             HHHHHHHHHHHHHTTC-HHHHHHHHHTSSS-------C--CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHHHHHHCCC-HHHHHHHHHhcCC-------C--CHHHHHHHHHHHHHcC---CchhHHHHHHHHHHHhhhhhh
Confidence            4456667777777888 8888888875321       1  1245678888888665   466789999999999999999


Q ss_pred             hHHHHHHHHHHhcchHHHHHHHHHhcccCC
Q 004468          443 AHLYMSEALEQLCKYKEALDFAIAAQCLDP  472 (751)
Q Consensus       443 a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p  472 (751)
                      +++.++.++..+|++.+|+...++.....+
T Consensus        72 a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~  101 (192)
T d1hh8a_          72 AYFQRGMLYYQTEKYDLAIKDLKEALIQLR  101 (192)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTTT
T ss_pred             hHHHHHHHHHhhccHHHHHHHHHHHHHhCc
Confidence            999999999999999999977766654444

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.99  E-value=0.041  Score=49.56  Aligned_cols=107  Identities=11%  Similarity=-0.048  Sum_probs=83.0

Q ss_pred             cCcchhHHHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhh----------------hhHhHHHHHhhcccccc
Q 004468          358 TGLGKCRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRH----------------ECLCIRAALLLKRKWKN  421 (751)
Q Consensus       358 ~~~~~~~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~----------------~~~~~ra~~~~~r~w~~  421 (751)
                      ...+..+.+...+......|. +..++..|.+++..+.......+..                ..+.+++.++...+   
T Consensus         6 ~D~~~f~~~~~~g~~~~~~g~-~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g---   81 (179)
T d2ff4a2           6 CDLGRFVAEKTAGVHAAAAGR-FEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACG---   81 (179)
T ss_dssp             BHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT---
T ss_pred             ccHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---
Confidence            345667778888888888888 8899999999999876543322211                13445666666554   


Q ss_pred             hhhhHHHhhHHHhcCCCCCcchHHHHHHHHHHhcchHHHHHHHHHhc
Q 004468          422 DAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQ  468 (751)
Q Consensus       422 d~y~al~d~~~a~~~~~~~~~a~~~~~~~l~~l~~~~~a~~~~~~~~  468 (751)
                      +.-.|+.++..++.++|.+..+|..++++|..+|++.+|+.......
T Consensus        82 ~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~  128 (179)
T d2ff4a2          82 RASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVK  128 (179)
T ss_dssp             CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            45678999999999999999999999999999999999998877653

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.80  E-value=1.2  Score=42.08  Aligned_cols=167  Identities=8%  Similarity=0.069  Sum_probs=101.0

Q ss_pred             cCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCCC
Q 004468           91 GHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASEDG  170 (751)
Q Consensus        91 ~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~Dg  170 (751)
                      .+...+..++|.+.. +.++.+-..++.|+..++....          ....+..-...+..|++..-+++++++-...+
T Consensus        33 ~~~~~~~~ld~D~~~-~~iywsd~~~~~I~~~~l~g~~----------~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~  101 (263)
T d1npea_          33 IPAKVIIGLAFDCVD-KVVYWTDISEPSIGRASLHGGE----------PTTIIRQDLGSPEGIALDHLGRTIFWTDSQLD  101 (263)
T ss_dssp             EEEEEEEEEEEETTT-TEEEEEETTTTEEEEEESSSCC----------CEEEECTTCCCEEEEEEETTTTEEEEEETTTT
T ss_pred             cCCCcEEEEEEEeCC-CEEEEEECCCCeEEEEEcccCC----------cEEEEEeccccccEEEEeccCCeEEEeccCCC
Confidence            345568889999874 3444555567888888887431          12223333356889999876777888888888


Q ss_pred             cEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCC
Q 004468          171 TLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPP  250 (751)
Q Consensus       171 ~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~  250 (751)
                      .|.+.++.....            .++...             .......+++.|..+.++.+-...+..+||-..+...
T Consensus       102 ~I~~~~~dg~~~------------~~l~~~-------------~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~  156 (263)
T d1npea_         102 RIEVAKMDGTQR------------RVLFDT-------------GLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGT  156 (263)
T ss_dssp             EEEEEETTSCSC------------EEEECS-------------SCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSC
T ss_pred             EEEEEecCCceE------------EEEecc-------------cccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCC
Confidence            999999875431            112110             1234678999997665555543333434553332110


Q ss_pred             ccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEE-eCCCcEEEEECCCCC
Q 004468          251 LTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLS-YSGEHVYLMDVNHAG  312 (751)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~-s~d~~I~lwdl~~~~  312 (751)
                      .            ...+..     .  .-...+.+++++.++.|... ...+.|...|++...
T Consensus       157 ~------------~~~i~~-----~--~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~  200 (263)
T d1npea_         157 N------------RRILAQ-----D--NLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPG  200 (263)
T ss_dssp             C------------CEEEEC-----T--TCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEE
T ss_pred             C------------ceeeee-----e--cccccceEEEeecCcEEEEEeCCCCEEEEEECCCCC
Confidence            0            000000     0  01136889999988877655 567899999998743

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=94.28  E-value=0.12  Score=52.31  Aligned_cols=233  Identities=12%  Similarity=0.122  Sum_probs=118.0

Q ss_pred             EEEECC---CCCEEEEEe-CCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCC-------------
Q 004468           55 AISWNS---KGSLLISGS-DDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDA-------------  117 (751)
Q Consensus        55 ~l~~s~---dg~~LaSgs-~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg-------------  117 (751)
                      .+.+..   ||++|.... .+.+|-+-|+.+.++...+.......+..++..++.+-.+++.++.+.             
T Consensus        89 ~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~  168 (459)
T d1fwxa2          89 HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDV  168 (459)
T ss_dssp             EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCG
T ss_pred             cccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccch
Confidence            566654   888877665 688899999999988665533455667777766543245777666532             


Q ss_pred             -----cEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCC--Cc-------------EEEEec
Q 004468          118 -----EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED--GT-------------LRQHDF  177 (751)
Q Consensus       118 -----~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~D--g~-------------I~iwDl  177 (751)
                           .+.++|..+..          ...... -.+....+++++++ +++++.+.+  ..             +.+++.
T Consensus       169 ~~y~~~~t~ID~~tm~----------V~~QV~-V~g~ld~~~~s~dG-K~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~  236 (459)
T d1fwxa2         169 ANYVNVFTAVDADKWE----------VAWQVL-VSGNLDNCDADYEG-KWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNI  236 (459)
T ss_dssp             G-EEEEEEEEETTTTE----------EEEEEE-ESSCCCCEEECSSS-SEEEEEESCTTCCSSHHHHTCCSEEEEEEEEH
T ss_pred             hhcceEEEEEecCCce----------EEEEee-eCCChhccccCCCC-CEEEEEeccccCCcchhhcccccceEEEEech
Confidence                 24556666421          111111 12345578889954 555554432  11             222322


Q ss_pred             CCCCCCCCCCCCCCccceEEEecccCcee-cccCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCC
Q 004468          178 RQGSSCPPAGSSHQECRNILLDLRCGAKR-SLADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQK  256 (751)
Q Consensus       178 r~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~  256 (751)
                      .........+....-....+.+....... .+...+ -......+.++|++...+++|..+.+|-|+|+++.....  ..
T Consensus       237 ~rie~av~~Gk~~eingV~VVD~~~~~~~~v~~yIP-VpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~--~~  313 (459)
T d1fwxa2         237 AEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIP-IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVF--YE  313 (459)
T ss_dssp             HHHHHHHHHTCSEEETTEEEEECSGG--CSSEEEEE-EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHH--HS
T ss_pred             HHhHHhhhcCCcEEeCCceeecccccCCcceeEEEe-cCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhh--cc
Confidence            11100000000000000112222211000 000000 012245689999755555566679999999998653221  00


Q ss_pred             CCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 004468          257 RMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLSYSGEHVYLMDVNH  310 (751)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~s~d~~I~lwdl~~  310 (751)
                      ...+..++...        ...+.....-+|+..|.-..+-.-|.+|--|++..
T Consensus       314 ~~~~~~~~~~e--------~elglgPLht~fd~~g~aytslfids~v~kw~~~~  359 (459)
T d1fwxa2         314 NADPRSAVVAE--------PELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIED  359 (459)
T ss_dssp             CC-GGGGEEEC--------CBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred             cCCccccEEee--------cccCcCccccccCCCceEEEEeeccceEEEEecch
Confidence            01111111111        01122356778999986555556799999999865

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.23  E-value=2.4  Score=40.28  Aligned_cols=229  Identities=11%  Similarity=0.149  Sum_probs=126.8

Q ss_pred             EEECCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCC
Q 004468           56 ISWNSKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDN  135 (751)
Q Consensus        56 l~~s~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~  135 (751)
                      .-.+|..+.||-=+ -.++.|+|+++...++.+ . ....|.--+|..+   +.|+-.. +..|+-|+++..+       
T Consensus        68 AIMhP~~~IiALra-g~~LQiFnletK~klks~-~-~~e~VvfWkWis~---~~L~lVT-~taVYHW~~~g~s-------  133 (327)
T d1utca2          68 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAH-T-MTDDVTFWKWISL---NTVALVT-DNAVYHWSMEGES-------  133 (327)
T ss_dssp             EEECSSSSEEEEEE-TTEEEEEETTTTEEEEEE-E-CSSCCCEEEESSS---SEEEEEC-SSEEEEEESSSSC-------
T ss_pred             hhcCCCCcEEEEec-CCeEEEEehhHhhhhceE-E-cCCCcEEEEecCC---CEEEEEc-CCceEEEcccCCC-------
Confidence            34577888888776 458999999999988877 2 4456777888866   4554433 5789999996421       


Q ss_pred             CCCCceeecccCC----ceeEEEEecCCCCEEEEE--eC----CCcEEEEecCCCCCCCCCCCCCCccceEEEecccCce
Q 004468          136 AITPSALYQCHTR----RVKKLAVEVGNPHVVWSA--SE----DGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAK  205 (751)
Q Consensus       136 ~~~~~~~~~~h~~----~V~~l~~sp~~~~~l~s~--s~----Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~  205 (751)
                        .|.+.+..|..    .|-.-..+++...++++|  ..    .|.+.+|..+....             ..++-..+..
T Consensus       134 --~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~s-------------Q~ieGhaa~F  198 (327)
T d1utca2         134 --QPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS-------------QPIEGHAASF  198 (327)
T ss_dssp             --CCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEE-------------EEECCSEEEE
T ss_pred             --CchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCcC-------------ccccceeeee
Confidence              56777776643    354555566443334333  22    25667777665431             1111111111


Q ss_pred             ecccCC-CCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCC-ccccCCCCCCCCccccccccccccCCccccceE
Q 004468          206 RSLADP-PKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPP-LTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLT  283 (751)
Q Consensus       206 ~~~~~~-~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt  283 (751)
                      ..+... ..+...+.|.+.-         +...+.++|.++..... ...++     .+.+..+.|...    ..+. .-
T Consensus       199 ~~~~~~g~~~~~~lf~fa~r---------~~~~~kLhIiEig~~~~g~~~f~-----kk~vdi~fppea----~~DF-Pv  259 (327)
T d1utca2         199 AQFKMEGNAEESTLFCFAVR---------GQAGGKLHIIEVGTPPTGNQPFP-----KKAVDVFFPPEA----QNDF-PV  259 (327)
T ss_dssp             EEECCTTCSSCEEEEEEEEE---------ETTEEEEEEEECSCCCTTCCCCC-----CEEEECCCCTTC----TTCC-EE
T ss_pred             EEEEcCCCCCCceEEEEEEC---------CCCCcEEEEEEcCCCccCCCCCc-----ceeEEEECCccc----cCCc-EE
Confidence            111000 1122223333321         12336888888865321 11111     111222222211    1233 45


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECCCCCcceeeeecCCCceeEEeCCC
Q 004468          284 HVTFSPNGEEVLLSYSGEHVYLMDVNHAGGRAMRYTVGDASKIMSFTPT  332 (751)
Q Consensus       284 ~v~fspdg~~Ll~~s~d~~I~lwdl~~~~~~~~~~~~~~~~~~~~~sp~  332 (751)
                      ++..|+.-..+..-+.-|.|++||+.++.......-..+.+-..+....
T Consensus       260 amqvs~kygiiyviTK~G~i~lyDleTgt~i~~nRIs~~~iF~~a~~~~  308 (327)
T d1utca2         260 AMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEA  308 (327)
T ss_dssp             EEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETT
T ss_pred             EEEeeccCCEEEEEecCcEEEEEEcccccEEEEeecCCCceEEeccCCC
Confidence            7889998889999999999999999997644443333444444443333

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.17  E-value=2.3  Score=39.89  Aligned_cols=187  Identities=11%  Similarity=0.061  Sum_probs=108.5

Q ss_pred             cEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECCCcEEEEECCCCCCCCCCCCCCCCceeecccCCceeE
Q 004468           73 HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGDAEVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKK  152 (751)
Q Consensus        73 ~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~Dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  152 (751)
                      .|+-.++.+......+  .....+..++|.+.. +.++.+=..++.|+--++.......      .....+......+..
T Consensus        11 ~I~~~~l~~~~~~~~~--~~~~~~~~id~d~~~-~~lYw~D~~~~~I~~~~l~~~~~~~------~~~~~~~~~~~~p~g   81 (266)
T d1ijqa1          11 EVRKMTLDRSEYTSLI--PNLRNVVALDTEVAS-NRIYWSDLSQRMICSTQLDRAHGVS------SYDTVISRDIQAPDG   81 (266)
T ss_dssp             SEEEEETTSCCCEEEE--CSCSSEEEEEEETTT-TEEEEEETTTTEEEEEEC--------------CEEEECSSCSCCCE
T ss_pred             eEEEEECCCCcceeee--CCCCceEEEEEEeCC-CEEEEEECCCCEEEEEEecCCCCCc------ceEEEEeCCCCCcce
Confidence            5887888765433333  345678899999883 3444444456777777765321110      112223333456778


Q ss_pred             EEEecCCCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEE
Q 004468          153 LAVEVGNPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLL  232 (751)
Q Consensus       153 l~~sp~~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~  232 (751)
                      |++.+.++++.++-...++|.+.++.....            ..+...             .......+++.|..+.++.
T Consensus        82 lAvD~~~~~lY~~d~~~~~I~v~~~~g~~~------------~~~~~~-------------~~~~P~~l~vd~~~g~ly~  136 (266)
T d1ijqa1          82 LAVDWIHSNIYWTDSVLGTVSVADTKGVKR------------KTLFRE-------------NGSKPRAIVVDPVHGFMYW  136 (266)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTSSSE------------EEEEEC-------------TTCCEEEEEEETTTTEEEE
T ss_pred             EEEeeccceEEEEecCCCEEEeEecCCceE------------EEEEcC-------------CCCCcceEEEEcccCeEEE
Confidence            999877788898888889999999876431            111110             1234678899986555555


Q ss_pred             EEe-CCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEcCCCCEEEEE-eCCCcEEEEECCC
Q 004468          233 VGG-SDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFSPNGEEVLLS-YSGEHVYLMDVNH  310 (751)
Q Consensus       233 sgs-~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fspdg~~Ll~~-s~d~~I~lwdl~~  310 (751)
                      +.. ..+.|.-.++.....              ..+....       -...+.+++++.++.|..+ ...+.|...++..
T Consensus       137 ~~~~~~~~I~r~~~dGs~~--------------~~l~~~~-------~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG  195 (266)
T d1ijqa1         137 TDWGTPAKIKKGGLNGVDI--------------YSLVTEN-------IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG  195 (266)
T ss_dssp             EECSSSCEEEEEETTSCCE--------------EEEECSS-------CSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             eccCCCcceeEeccCCCce--------------ecccccc-------cceeeEEEeeccccEEEEecCCcCEEEEEECCC
Confidence            542 234555555432211              1111100       1136889999988877766 5578999999977


Q ss_pred             CCcc
Q 004468          311 AGGR  314 (751)
Q Consensus       311 ~~~~  314 (751)
                      ....
T Consensus       196 ~~~~  199 (266)
T d1ijqa1         196 GNRK  199 (266)
T ss_dssp             CSCE
T ss_pred             CCEE
Confidence            5433

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=93.86  E-value=3.8  Score=41.28  Aligned_cols=119  Identities=13%  Similarity=0.102  Sum_probs=67.0

Q ss_pred             CCCcEEEEEECCCCCEEEEE-e----CCCcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcEEEEEECC-------
Q 004468           49 HQGCVNAISWNSKGSLLISG-S----DDTHINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDELVVSGAGD-------  116 (751)
Q Consensus        49 H~~~V~~l~~s~dg~~LaSg-s----~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~D-------  116 (751)
                      +.-.+-.+++||+|++||-+ +    +-..|++.|+.+++.+......  .....+.|.++  ++.|+-...|       
T Consensus       123 ~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~--~~~~~~~W~~D--~~~~~Y~~~~~~~~~~~  198 (430)
T d1qfma1         123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER--VKFSCMAWTHD--GKGMFYNAYPQQDGKSD  198 (430)
T ss_dssp             SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE--ECSCCEEECTT--SSEEEEEECCCCSSCCS
T ss_pred             ccceecceEecCCCCEEEEEeccccCchheeEEeccCcceeccccccc--ccccceEEcCC--CCEEEEEEeccccCccc
Confidence            33344567889999988843 2    3345999999999876533111  12256889999  5655543322       


Q ss_pred             ---------CcEEEEECCCCCCCCCCCCCCCCceeecccC--CceeEEEEecCCCCEEEEEe--CCCcEEE--EecCC
Q 004468          117 ---------AEVRLFNLSRFSGRGLDDNAITPSALYQCHT--RRVKKLAVEVGNPHVVWSAS--EDGTLRQ--HDFRQ  179 (751)
Q Consensus       117 ---------g~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~--~~V~~l~~sp~~~~~l~s~s--~Dg~I~i--wDlr~  179 (751)
                               ..|..|.+.+...        .....+....  ..+..+..+.++..++++.+  .+....+  .|+..
T Consensus       199 ~~~~~~~~~~~v~~h~lgt~~~--------~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~  268 (430)
T d1qfma1         199 GTETSTNLHQKLYYHVLGTDQS--------EDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQ  268 (430)
T ss_dssp             SSCCCCCCCCEEEEEETTSCGG--------GCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGG
T ss_pred             ccccccCCcceEEEEECCCCcc--------ccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCC
Confidence                     2577888876432        2233343333  34556677774434444333  2334344  45444

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.37  E-value=0.2  Score=49.16  Aligned_cols=96  Identities=13%  Similarity=0.075  Sum_probs=77.8

Q ss_pred             hhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcchHHHHHHHHH
Q 004468          373 SLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALE  452 (751)
Q Consensus       373 ~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~a~~~~~~~l~  452 (751)
                      .+.++..+..|+..+..+|...|..      ...|.+|+.++...+-  +.-.|+..+.+++.++|.+..++..++.++.
T Consensus        52 ~~~~~e~~~~Al~~~~~ai~lnP~~------~~a~~~r~~~l~~l~~--~~~eal~~~~~al~~~p~~~~a~~~~~~~~~  123 (315)
T d2h6fa1          52 VLQRDERSERAFKLTRDAIELNAAN------YTVWHFRRVLLKSLQK--DLHEEMNYITAIIEEQPKNYQVWHHRRVLVE  123 (315)
T ss_dssp             HHHHTCCCHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHhCCchHHHHHHHHHHHHHCCCC------hHHHHHHHHHHHHhCc--CHHHHHHHHHHHHHHHHhhhhHHHHHhHHHH
Confidence            3344444789999999999977655      4577888887765432  2457899999999999999999999999999


Q ss_pred             HhcchHHHHHHHHHhcccCCCChh
Q 004468          453 QLCKYKEALDFAIAAQCLDPSNSV  476 (751)
Q Consensus       453 ~l~~~~~a~~~~~~~~~~~p~~~~  476 (751)
                      .++++.+|+.+...+....|....
T Consensus       124 ~l~~~~eAl~~~~kal~~dp~n~~  147 (315)
T d2h6fa1         124 WLRDPSQELEFIADILNQDAKNYH  147 (315)
T ss_dssp             HHTCCTTHHHHHHHHHHHCTTCHH
T ss_pred             hhccHHHHHHHHhhhhhhhhcchH
Confidence            999999999999999998887653

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=93.27  E-value=1  Score=44.54  Aligned_cols=94  Identities=12%  Similarity=0.165  Sum_probs=58.4

Q ss_pred             cchhhhccccccEEec-cCCCcEEEEEECCCCCEEEEEeCC-CcEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcE
Q 004468           32 MHSSLVRRLSQERELE-GHQGCVNAISWNSKGSLLISGSDD-THINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDEL  109 (751)
Q Consensus        32 ~~~~~i~~~~~~~~L~-gH~~~V~~l~~s~dg~~LaSgs~D-g~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~  109 (751)
                      +++....+......+. .|........+.++|++++.|+.+ ..+.+||..+......-.......-.+++..++  +++
T Consensus        56 ~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~d--G~v  133 (387)
T d1k3ia3          56 SWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSD--GRV  133 (387)
T ss_dssp             EECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTT--SCE
T ss_pred             EEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEecCccCcccccccccccccccceeeecC--Cce
Confidence            4444444444443332 233333456788999999998765 589999998765543221112222345667777  788


Q ss_pred             EEEEECC------CcEEEEECCCC
Q 004468          110 VVSGAGD------AEVRLFNLSRF  127 (751)
Q Consensus       110 l~sgs~D------g~V~vwd~~~~  127 (751)
                      ++.|+.+      ..+.+||+.+.
T Consensus       134 ~v~GG~~~~~~~~~~v~~yd~~~~  157 (387)
T d1k3ia3         134 FTIGGSWSGGVFEKNGEVYSPSSK  157 (387)
T ss_dssp             EEECCCCCSSSCCCCEEEEETTTT
T ss_pred             eeeccccccccccceeeeecCCCC
Confidence            8888753      36899998864

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.98  E-value=0.22  Score=48.33  Aligned_cols=100  Identities=10%  Similarity=0.052  Sum_probs=82.7

Q ss_pred             HHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcchHHH
Q 004468          367 VEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLY  446 (751)
Q Consensus       367 ~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~a~~~  446 (751)
                      .+.|...+..|+ +..|+..|..+|...+..      ...+.+.+..+...+   +.-.|+....+++.++|.+..++..
T Consensus        23 ~~~g~~~~~~g~-~~~A~~~~~~al~~~P~~------~~a~~~lg~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~   92 (323)
T d1fcha_          23 FEEGLRRLQEGD-LPNAVLLFEAAVQQDPKH------MEAWQYLGTTQAENE---QELLAISALRRCLELKPDNQTALMA   92 (323)
T ss_dssp             HHHHHHHHHTTC-HHHHHHHHHHHHHSCTTC------HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHcCC-HHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcC---ChHHHHHHHHhhhcccccccccccc
Confidence            456778888888 999999999999877654      345666777776653   4567888899999999999999999


Q ss_pred             HHHHHHHhcchHHHHHHHHHhcccCCCChh
Q 004468          447 MSEALEQLCKYKEALDFAIAAQCLDPSNSV  476 (751)
Q Consensus       447 ~~~~l~~l~~~~~a~~~~~~~~~~~p~~~~  476 (751)
                      ++.++..++++.+|..++.......|....
T Consensus        93 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~  122 (323)
T d1fcha_          93 LAVSFTNESLQRQACEILRDWLRYTPAYAH  122 (323)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHTSTTTGG
T ss_pred             ccccccccccccccccchhhHHHhccchHH
Confidence            999999999999999999988887776543

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.75  E-value=0.16  Score=50.05  Aligned_cols=99  Identities=12%  Similarity=0.080  Sum_probs=80.4

Q ss_pred             HHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcchHHHH
Q 004468          368 EIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYM  447 (751)
Q Consensus       368 ~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~a~~~~  447 (751)
                      +.|+..+..|+ |..|+..|.+++...+..      ...+...+..+...   |+.-.|+....+++.++|.+..+++.+
T Consensus         4 ~la~~~~~~G~-~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~---~~~~~A~~~~~~al~~~p~~~~a~~~l   73 (388)
T d1w3ba_           4 ELAHREYQAGD-FEAAERHCMQLWRQEPDN------TGVLLLLSSIHFQC---RRLDRSAHFSTLAIKQNPLLAEAYSNL   73 (388)
T ss_dssp             THHHHHHHHTC-HHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHcCC-HHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            35666777788 999999999999877654      34556667666654   345578888999999999999999999


Q ss_pred             HHHHHHhcchHHHHHHHHHhcccCCCChh
Q 004468          448 SEALEQLCKYKEALDFAIAAQCLDPSNSV  476 (751)
Q Consensus       448 ~~~l~~l~~~~~a~~~~~~~~~~~p~~~~  476 (751)
                      +.++..+|++.+|+..........|....
T Consensus        74 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  102 (388)
T d1w3ba_          74 GNVYKERGQLQEAIEHYRHALRLKPDFID  102 (388)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHhhhhcccccccccccccccccccccc
Confidence            99999999999999999888877776543

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.31  E-value=0.28  Score=48.06  Aligned_cols=92  Identities=10%  Similarity=0.024  Sum_probs=76.7

Q ss_pred             hcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcchHHHHHHHHHHh
Q 004468          375 EEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQL  454 (751)
Q Consensus       375 ~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~a~~~~~~~l~~l  454 (751)
                      .-+..+..++..+..+|...+..      ...|.+|+..+...+-   .-.|+....+++.++|.+..++..++.++..+
T Consensus        89 ~l~~~~~eal~~~~~al~~~p~~------~~a~~~~~~~~~~l~~---~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~  159 (315)
T d2h6fa1          89 SLQKDLHEEMNYITAIIEEQPKN------YQVWHHRRVLVEWLRD---PSQELEFIADILNQDAKNYHAWQHRQWVIQEF  159 (315)
T ss_dssp             HTTCCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHTC---CTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HhCcCHHHHHHHHHHHHHHHHhh------hhHHHHHhHHHHhhcc---HHHHHHHHhhhhhhhhcchHHHHHHHHHHHHH
Confidence            33445778888999999887765      4577888888876543   45689999999999999999999999999999


Q ss_pred             cchHHHHHHHHHhcccCCCCh
Q 004468          455 CKYKEALDFAIAAQCLDPSNS  475 (751)
Q Consensus       455 ~~~~~a~~~~~~~~~~~p~~~  475 (751)
                      +++.+|+.+........|...
T Consensus       160 ~~~~~Al~~~~~al~~~p~n~  180 (315)
T d2h6fa1         160 KLWDNELQYVDQLLKEDVRNN  180 (315)
T ss_dssp             TCCTTHHHHHHHHHHHCTTCH
T ss_pred             HhhHHHHHHHHHHHHHCCccH
Confidence            999999999999998888764

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.13  E-value=0.27  Score=47.76  Aligned_cols=94  Identities=12%  Similarity=0.045  Sum_probs=72.6

Q ss_pred             HHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcchHHHHHH
Q 004468          370 ARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSE  449 (751)
Q Consensus       370 ~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~a~~~~~~  449 (751)
                      +......|+ +..|+..+..++...+..      ...+.+.+..+...+   +.-.|+..+.++++++|.+..+++.++.
T Consensus       179 ~~~~~~~~~-~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~p~~~~a~~~lg~  248 (323)
T d1fcha_         179 GVLFNLSGE-YDKAVDCFTAALSVRPND------YLLWNKLGATLANGN---QSEEAVAAYRRALELQPGYIRSRYNLGI  248 (323)
T ss_dssp             HHHHHHTTC-HHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHH-Hhhhhccccccccccccc------ccchhhhhhcccccc---cchhHHHHHHHHHHHhhccHHHHHHHHH
Confidence            344445555 888888999888866554      346667777776643   3557888899999999999999999999


Q ss_pred             HHHHhcchHHHHHHHHHhcccCCC
Q 004468          450 ALEQLCKYKEALDFAIAAQCLDPS  473 (751)
Q Consensus       450 ~l~~l~~~~~a~~~~~~~~~~~p~  473 (751)
                      ++..+|++.+|+.+..+.....|.
T Consensus       249 ~~~~~g~~~~A~~~~~~al~l~p~  272 (323)
T d1fcha_         249 SCINLGAHREAVEHFLEALNMQRK  272 (323)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCCc
Confidence            999999999999888877665554

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.08  E-value=0.77  Score=44.79  Aligned_cols=55  Identities=24%  Similarity=0.165  Sum_probs=45.1

Q ss_pred             hhhhHHHhhHHHhcCCCCCcchHHHHHHHHHHhcchHHHHHHHHHhcccCCCChh
Q 004468          422 DAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSV  476 (751)
Q Consensus       422 d~y~al~d~~~a~~~~~~~~~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~~  476 (751)
                      +.-.|+....+++.++|....+++.++.++..+|++.+|..++++.....|.+..
T Consensus       320 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~  374 (388)
T d1w3ba_         320 NIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFAD  374 (388)
T ss_dssp             CHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHH
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence            4456777778888888988888888999999999999999888888888887654

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=90.88  E-value=5.8  Score=36.26  Aligned_cols=69  Identities=14%  Similarity=0.235  Sum_probs=46.4

Q ss_pred             cEEeccCCCcEEEEEECCCCCEEEEEeC-C-----CcEEEEeCCCCeEEEEec-----ccCCcceEEEEEecCCCCcEEE
Q 004468           43 ERELEGHQGCVNAISWNSKGSLLISGSD-D-----THINVWSYSSRKLLHSIE-----TGHSANVFCTKFVPETSDELVV  111 (751)
Q Consensus        43 ~~~L~gH~~~V~~l~~s~dg~~LaSgs~-D-----g~I~IWd~~~~~~~~~l~-----~~h~~~V~~v~fsp~s~~~~l~  111 (751)
                      .+.|..+.+.+...+|||||+.||-.+. +     ..|.+++..++.......     ...........|+|+  ++.|+
T Consensus        33 ~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spd--g~~l~  110 (281)
T d1k32a2          33 TRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPD--GNLII  110 (281)
T ss_dssp             EEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTT--CCEEE
T ss_pred             EEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEeeecCCCccCccccccccccCCC--CCEEE
Confidence            4567778888999999999999985532 2     237777777776543221     112234678889999  67776


Q ss_pred             EE
Q 004468          112 SG  113 (751)
Q Consensus       112 sg  113 (751)
                      ..
T Consensus       111 ~~  112 (281)
T d1k32a2         111 ST  112 (281)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=90.85  E-value=7.9  Score=37.71  Aligned_cols=212  Identities=11%  Similarity=0.125  Sum_probs=109.4

Q ss_pred             CCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCcceEEEEEec----CCCCcEEEEEE-C-C--CcEEEEECCCCCCCC
Q 004468           60 SKGSLLISGSDDTHINVWSYSSRKLLHSIETGHSANVFCTKFVP----ETSDELVVSGA-G-D--AEVRLFNLSRFSGRG  131 (751)
Q Consensus        60 ~dg~~LaSgs~Dg~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp----~s~~~~l~sgs-~-D--g~V~vwd~~~~~~~~  131 (751)
                      |+..+++...+.+-|.+||+. |+.+..+..   +.++.|..-.    .....-|+.++ . +  .+|.+|.+.......
T Consensus        38 p~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~~---Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l  113 (353)
T d1h6la_          38 PQNSKLITTNKKSGLAVYSLE-GKMLHSYHT---GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTL  113 (353)
T ss_dssp             GGGCEEEEEETTSCCEEEETT-CCEEEECCS---SCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEE
T ss_pred             cCccEEEEEcCcCCEEEEcCC-CcEEEeccc---CCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCccccc
Confidence            456788877888789999985 888877733   3444444321    21012244444 2 2  358888886322110


Q ss_pred             CCCCCCCCceeecccCCceeEEEE--ecCCCC-EEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecc
Q 004468          132 LDDNAITPSALYQCHTRRVKKLAV--EVGNPH-VVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSL  208 (751)
Q Consensus       132 ~~~~~~~~~~~~~~h~~~V~~l~~--sp~~~~-~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  208 (751)
                      .. .. .+......-...|+.+|+  ++.++. +++....+|.+.+|.+......      .. ....+..+.       
T Consensus       114 ~~-~~-~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g------~v-~~~lvr~f~-------  177 (353)
T d1h6la_         114 QS-IT-DPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNG------YI-SGKKVRAFK-------  177 (353)
T ss_dssp             EE-CS-CSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTS------SE-EEEEEEEEE-------
T ss_pred             cc-cc-ccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCC------ce-eeEeeeccC-------
Confidence            00 00 000001111234778887  565554 4566778899999987543210      00 001111111       


Q ss_pred             cCCCCCccceEEEEEeCCCCcEEEEEeCCCeEEEEeCCCCCCccccCCCCCCCCccccccccccccCCccccceEEEEEc
Q 004468          209 ADPPKQTLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCQKRMSPPPCVNYFCPMHLSEHGRSSLHLTHVTFS  288 (751)
Q Consensus       209 ~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~~IriwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vt~v~fs  288 (751)
                           ....+-.|.+.+. ...|.++-.+.-|+.|+........        ...+......++      ..-+-.|+.-
T Consensus       178 -----~~~q~EGCVvDde-~~~LyisEE~~Giw~~~a~~~~~~~--------~~~i~~~~g~~l------~~D~EGlaiy  237 (353)
T d1h6la_         178 -----MNSQTEGMAADDE-YGSLYIAEEDEAIWKFSAEPDGGSN--------GTVIDRADGRHL------TPDIEGLTIY  237 (353)
T ss_dssp             -----CSSCEEEEEEETT-TTEEEEEETTTEEEEEESSTTSCSC--------CEEEEECSSSSC------CSCEEEEEEE
T ss_pred             -----CCCccceEEEeCC-CCcEEEecCccceEEEEeccCCCcc--------ceeeecccCccc------cCCccccEEE
Confidence                 1235778999985 5778888888777666654221100        000000000111      1135556543


Q ss_pred             --CCCC-EEEEEeC-CCcEEEEECCCC
Q 004468          289 --PNGE-EVLLSYS-GEHVYLMDVNHA  311 (751)
Q Consensus       289 --pdg~-~Ll~~s~-d~~I~lwdl~~~  311 (751)
                        +++. ||++++. +++..|||....
T Consensus       238 ~~~~~~GylivSsQG~n~f~vydr~~~  264 (353)
T d1h6la_         238 YAADGKGYLLASSQGNSSYAIYERQGQ  264 (353)
T ss_dssp             ECGGGCEEEEEEEGGGTEEEEEESSTT
T ss_pred             EcCCCCeEEEEEcCCCCeEEEEecCCC
Confidence              3444 6666664 789999999874

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=90.43  E-value=0.37  Score=41.08  Aligned_cols=94  Identities=17%  Similarity=0.095  Sum_probs=70.8

Q ss_pred             hhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcc-ccc------chhhhHHHhhHHHhcCCCCCcchHHHHHHHHH
Q 004468          380 PYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKR-KWK------NDAQMAIRDCYNARRIDSSSFRAHLYMSEALE  452 (751)
Q Consensus       380 ~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r-~w~------~d~y~al~d~~~a~~~~~~~~~a~~~~~~~l~  452 (751)
                      |..|+..|..++...|..      ...+.+.+.++... .+.      ...-.|+....+|++++|.+..+++.+..++.
T Consensus        13 fe~A~~~~e~al~~~P~~------~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~   86 (145)
T d1zu2a1          13 FEQIRQDAENTYKSNPLD------ADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYT   86 (145)
T ss_dssp             HHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhCCcc------hHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHH
Confidence            567888899999887766      34566666665532 221      22345888899999999999999999999998


Q ss_pred             Hhcc-----------hHHHHHHHHHhcccCCCChhhhH
Q 004468          453 QLCK-----------YKEALDFAIAAQCLDPSNSVMAE  479 (751)
Q Consensus       453 ~l~~-----------~~~a~~~~~~~~~~~p~~~~~~~  479 (751)
                      .+++           +.+|..+.+.....-|.......
T Consensus        87 ~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~  124 (145)
T d1zu2a1          87 SFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLK  124 (145)
T ss_dssp             HHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHH
Confidence            8764           58888888888888887665433

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=90.09  E-value=0.48  Score=44.07  Aligned_cols=90  Identities=18%  Similarity=0.096  Sum_probs=70.6

Q ss_pred             HHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcchHHHHHHHHHHhcchHHHH
Q 004468          382 YGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEAL  461 (751)
Q Consensus       382 ~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~a~~~~~~~l~~l~~~~~a~  461 (751)
                      .++..+++.+.....  .+......|.+++..+...+   +.-.|+....+++.++|+++.+++.++.++..+|++.+|+
T Consensus        17 ~al~~~~e~l~~~~~--~~~~~a~~~~~~G~~y~~~g---~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~   91 (259)
T d1xnfa_          17 VILARMEQILASRAL--TDDERAQLLYERGVLYDSLG---LRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAY   91 (259)
T ss_dssp             HHHHHHHHHHTSSCC--CHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHhhhc--CCHHHHHHHHHHHHHHHHCC---CHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhh
Confidence            344455666654332  23334557778888888764   3557899999999999999999999999999999999999


Q ss_pred             HHHHHhcccCCCChh
Q 004468          462 DFAIAAQCLDPSNSV  476 (751)
Q Consensus       462 ~~~~~~~~~~p~~~~  476 (751)
                      .+...+....|.+..
T Consensus        92 ~~~~~al~~~p~~~~  106 (259)
T d1xnfa_          92 EAFDSVLELDPTYNY  106 (259)
T ss_dssp             HHHHHHHHHCTTCTH
T ss_pred             hhhhHHHHHHhhhhh
Confidence            999999999897664

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.68  E-value=0.92  Score=35.15  Aligned_cols=83  Identities=17%  Similarity=0.098  Sum_probs=59.0

Q ss_pred             HHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcchHHH
Q 004468          367 VEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLY  446 (751)
Q Consensus       367 ~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~a~~~  446 (751)
                      .+.+......|. |..|+.-+.+++...+.....                                    .+....++..
T Consensus         9 ~~lG~~~~~~g~-y~~A~~~~~~Al~~~~~~~~~------------------------------------~~~~~~~l~~   51 (95)
T d1tjca_           9 FELGKVAYTEAD-YYHTELWMEQALRQLDEGEIS------------------------------------TIDKVSVLDY   51 (95)
T ss_dssp             HHHHHHHHHTTC-HHHHHHHHHHHHHHHHTTCCC------------------------------------SSCHHHHHHH
T ss_pred             HHHHHHHHHCCC-HHHHHHHHHHHHHHHhhhhcc------------------------------------CccHHHHHHH
Confidence            456677777787 889999999888755443111                                    1223456778


Q ss_pred             HHHHHHHhcchHHHHHHHHHhcccCCCChhhhHHHHHHHH
Q 004468          447 MSEALEQLCKYKEALDFAIAAQCLDPSNSVMAEKVENIKK  486 (751)
Q Consensus       447 ~~~~l~~l~~~~~a~~~~~~~~~~~p~~~~~~~~~~~~~~  486 (751)
                      ++.|+..+|++.+|+.+.+++....|.+......+..+.+
T Consensus        52 Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl~~~~~   91 (95)
T d1tjca_          52 LSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLKYFEY   91 (95)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Confidence            8899999999999999999988888987765544444443

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=89.67  E-value=1.8  Score=42.69  Aligned_cols=118  Identities=15%  Similarity=0.034  Sum_probs=72.0

Q ss_pred             cEEEEEECCCCCEEEEEeCCC-----------cEEEEeCCCCeEE--EEecccCCcceEEEEEecCCCCcEEEEEECC-C
Q 004468           52 CVNAISWNSKGSLLISGSDDT-----------HINVWSYSSRKLL--HSIETGHSANVFCTKFVPETSDELVVSGAGD-A  117 (751)
Q Consensus        52 ~V~~l~~s~dg~~LaSgs~Dg-----------~I~IWd~~~~~~~--~~l~~~h~~~V~~v~fsp~s~~~~l~sgs~D-g  117 (751)
                      .+.......+|++++-|+.+.           .+.+||+.+++..  ......|........+.++  +.+++.|+.+ .
T Consensus        21 ~~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~--g~i~v~Gg~~~~   98 (387)
T d1k3ia3          21 PAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGN--GQIVVTGGNDAK   98 (387)
T ss_dssp             CSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTT--SCEEEECSSSTT
T ss_pred             ccEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecC--CcEEEeecCCCc
Confidence            334445566899888888531           2679999877532  2232344444456678888  7888888665 5


Q ss_pred             cEEEEECCCCCCCCCCCCCCCCceeecccCCceeEEEEecCCCCEEEEEeCC------CcEEEEecCCCC
Q 004468          118 EVRLFNLSRFSGRGLDDNAITPSALYQCHTRRVKKLAVEVGNPHVVWSASED------GTLRQHDFRQGS  181 (751)
Q Consensus       118 ~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~D------g~I~iwDlr~~~  181 (751)
                      .+.+||..+..-..        ...+.... .-..++..+ ++++++.|+.+      ..+.+||..+.+
T Consensus        99 ~~~~yd~~~~~w~~--------~~~~~~~r-~~~~~~~~~-dG~v~v~GG~~~~~~~~~~v~~yd~~~~~  158 (387)
T d1k3ia3          99 KTSLYDSSSDSWIP--------GPDMQVAR-GYQSSATMS-DGRVFTIGGSWSGGVFEKNGEVYSPSSKT  158 (387)
T ss_dssp             CEEEEEGGGTEEEE--------CCCCSSCC-SSCEEEECT-TSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred             ceeEecCccCcccc--------cccccccc-cccceeeec-CCceeeeccccccccccceeeeecCCCCc
Confidence            89999998643211        11111111 122455556 66888887753      358889887753

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=89.45  E-value=0.41  Score=38.60  Aligned_cols=65  Identities=15%  Similarity=0.008  Sum_probs=55.3

Q ss_pred             HHHHhhcccccchhhhHHHhhHHHhcCCCCCcchHHHHHHHHHHhcchHHHHHHHHHhcccCCCChhh
Q 004468          410 RAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSVM  477 (751)
Q Consensus       410 ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~~~  477 (751)
                      .+..+++.   |+...|+....+++.++|.++.++..++.++..++++.+|..++.......|.....
T Consensus        22 ~g~~~~~~---g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a   86 (112)
T d1hxia_          22 EGLSMLKL---ANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAV   86 (112)
T ss_dssp             HHHHHHHT---TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHH---hhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccc
Confidence            34444443   557778999999999999999999999999999999999999999999999987643

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.75  E-value=2  Score=38.11  Aligned_cols=104  Identities=12%  Similarity=0.001  Sum_probs=80.6

Q ss_pred             hHHHHHHHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCc-
Q 004468          363 CRMLVEIARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSF-  441 (751)
Q Consensus       363 ~~~l~~~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~-  441 (751)
                      ...+...+.-.+..|+ +..|+..|+.+|..-+..      ...|.+|+.++...+   +--.|+.++.+|+...+.+. 
T Consensus        36 ~~~~~nlG~~~~~~g~-~~~A~~~~~kAl~ldp~~------~~a~~~~g~~~~~~g---~~~~A~~~~~kAl~~~~~n~~  105 (192)
T d1hh8a_          36 SRICFNIGCMYTILKN-MTEAEKAFTRSINRDKHL------AVAYFQRGMLYYQTE---KYDLAIKDLKEALIQLRGNQL  105 (192)
T ss_dssp             HHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTTTTCSE
T ss_pred             HHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhh------hhhHHHHHHHHHhhc---cHHHHHHHHHHHHHhCccCch
Confidence            3445566777777787 999999999999866544      457889999987654   45678999999987655432 


Q ss_pred             ---------------chHHHHHHHHHHhcchHHHHHHHHHhcccCCCChh
Q 004468          442 ---------------RAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSV  476 (751)
Q Consensus       442 ---------------~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~~  476 (751)
                                     .+++.++.++..++++.+|...+.......|....
T Consensus       106 ~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~~~  155 (192)
T d1hh8a_         106 IDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRH  155 (192)
T ss_dssp             EECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGG
T ss_pred             HHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcch
Confidence                           45778999999999999999999888888786543

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.82  E-value=0.79  Score=37.08  Aligned_cols=55  Identities=16%  Similarity=0.112  Sum_probs=49.7

Q ss_pred             hhhhHHHhhHHHhcCCCCCcchHHHHHHHHHHhcchHHHHHHHHHhcccCCCChh
Q 004468          422 DAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSV  476 (751)
Q Consensus       422 d~y~al~d~~~a~~~~~~~~~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~~  476 (751)
                      +.-.|+....+++.++|..+.++..++.|+..++++.+|+.....+....|....
T Consensus        18 ~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~   72 (117)
T d1elwa_          18 NIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGK   72 (117)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             CHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhh
Confidence            3556888899999999999999999999999999999999999999999997654

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.23  E-value=0.88  Score=40.25  Aligned_cols=56  Identities=13%  Similarity=-0.143  Sum_probs=50.2

Q ss_pred             chhhhHHHhhHHHhcCCCCCcchHHHHHHHHHHhcchHHHHHHHHHhcccCCCChh
Q 004468          421 NDAQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSV  476 (751)
Q Consensus       421 ~d~y~al~d~~~a~~~~~~~~~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~~  476 (751)
                      |+--.|+....+|+.++|.++.++..++.|+..++++.+|+.++..+....|.+..
T Consensus        18 g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~   73 (201)
T d2c2la1          18 RKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVK   73 (201)
T ss_dssp             TCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHH
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHH
Confidence            34556888889999999999999999999999999999999999999999997653

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=83.34  E-value=9.8  Score=37.90  Aligned_cols=177  Identities=10%  Similarity=0.076  Sum_probs=98.4

Q ss_pred             CCcEEEEEECC--CCCEEEEEeCCC------------------cEEEEeCCCCeEEEEecccCCcceEEEEEecCCCCcE
Q 004468           50 QGCVNAISWNS--KGSLLISGSDDT------------------HINVWSYSSRKLLHSIETGHSANVFCTKFVPETSDEL  109 (751)
Q Consensus        50 ~~~V~~l~~s~--dg~~LaSgs~Dg------------------~I~IWd~~~~~~~~~l~~~h~~~V~~v~fsp~s~~~~  109 (751)
                      ...+..+...+  .-.|++.++.+.                  .+.+.|..+.+...++..  .++...+.++|+  |++
T Consensus       131 ~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t~ID~~tm~V~~QV~V--~g~ld~~~~s~d--GK~  206 (459)
T d1fwxa2         131 AKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLV--SGNLDNCDADYE--GKW  206 (459)
T ss_dssp             CCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEEEEETTTTEEEEEEEE--SSCCCCEEECSS--SSE
T ss_pred             CCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEEEEecCCceEEEEeee--CCChhccccCCC--CCE
Confidence            34566666654  445777776633                  266789998888777632  346778999999  788


Q ss_pred             EEEEECCC---------------cEEEEECCCC------------CCCC-CC---CCCCCCceeecccCCceeEEEEecC
Q 004468          110 VVSGAGDA---------------EVRLFNLSRF------------SGRG-LD---DNAITPSALYQCHTRRVKKLAVEVG  158 (751)
Q Consensus       110 l~sgs~Dg---------------~V~vwd~~~~------------~~~~-~~---~~~~~~~~~~~~h~~~V~~l~~sp~  158 (751)
                      +++.+.+.               .+.++++...            .+.. ++   ......+..+.. ......+.++|+
T Consensus       207 af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV~VVD~~~~~~~~v~~yIPV-pKsPHGV~vSPD  285 (459)
T d1fwxa2         207 AFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPD  285 (459)
T ss_dssp             EEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGG--CSSEEEEEE-ESSCCCEEECTT
T ss_pred             EEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCCceeecccccCCcceeEEEec-CCCCCceEECCC
Confidence            88776432               1333333210            0000 00   000011222222 233567899997


Q ss_pred             CCCEEEEEeCCCcEEEEecCCCCCCCCCCCCCCccceEEEecccCceecccCCCCCccceEEEEEeCCCCcEEEEEeCCC
Q 004468          159 NPHVVWSASEDGTLRQHDFRQGSSCPPAGSSHQECRNILLDLRCGAKRSLADPPKQTLSLKSCDISSTRPHLLLVGGSDA  238 (751)
Q Consensus       159 ~~~~l~s~s~Dg~I~iwDlr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~i~~sp~~~~~l~sgs~D~  238 (751)
                      +..+++++..+.++.++|++.-.....   ...+...++           ...+.....-...+|.. +++...+---|.
T Consensus       286 GKyi~VaGKLs~tVSViD~~Ki~~~~~---~~~~~~~~~-----------~~e~elglgPLht~fd~-~g~aytslfids  350 (459)
T d1fwxa2         286 KKHLCVAGKLSPTVTVLDVTRFDAVFY---ENADPRSAV-----------VAEPELGLGPLHTAFDG-RGNAYTSLFLDS  350 (459)
T ss_dssp             SSEEEEECTTSSBEEEEEGGGHHHHHH---SCC-GGGGE-----------EECCBCCSCEEEEEECT-TSEEEEEETTTT
T ss_pred             CCEEEEeCCcCCcEEEEEehhhhhhhc---ccCCccccE-----------EeecccCcCccccccCC-CceEEEEeeccc
Confidence            766777777899999999975321100   000000000           00111122334557877 467777777899


Q ss_pred             eEEEEeCC
Q 004468          239 FARLYDRR  246 (751)
Q Consensus       239 ~IriwD~~  246 (751)
                      .|.-|++.
T Consensus       351 ~v~kw~~~  358 (459)
T d1fwxa2         351 QVVKWNIE  358 (459)
T ss_dssp             EEEEEEHH
T ss_pred             eEEEEecc
Confidence            99999985

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=82.61  E-value=1.9  Score=37.16  Aligned_cols=82  Identities=20%  Similarity=0.151  Sum_probs=63.4

Q ss_pred             HHHHhhhcCCChhHHHHHhHHHHhcccCCCCCchhhhhHhHHHHHhhcccccchhhhHHHhhHHHhcCCCCCcchHHHHH
Q 004468          369 IARNSLEEGKHPYYGIEACNEVLEGHLSGIGPMLRHECLCIRAALLLKRKWKNDAQMAIRDCYNARRIDSSSFRAHLYMS  448 (751)
Q Consensus       369 ~~~~~~~~g~~~~~ai~~~~~~i~~~~~~~~~~~~~~~~~~ra~~~~~r~w~~d~y~al~d~~~a~~~~~~~~~a~~~~~  448 (751)
                      .+.-....+. |..||..|+.+|...+..      ...|.+++.+++..+   +.-.|+.+..+++.++|.+..++..+.
T Consensus        83 la~~~~~~~~-~~~Ai~~~~~al~~~p~~------~~a~~~~g~~~~~l~---~~~~A~~~~~~al~l~p~n~~~~~~l~  152 (169)
T d1ihga1          83 IGACKLKMSD-WQGAVDSCLEALEIDPSN------TKALYRRAQGWQGLK---EYDQALADLKKAQEIAPEDKAIQAELL  152 (169)
T ss_dssp             HHHHHHHTTC-HHHHHHHHHHHHTTCTTC------HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHhhcc-cchhhhhhhhhhhhhhhh------hhHHHhHHHHHHHcc---CHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            3444444566 889999999999866544      457788888888764   456789999999999999999999888


Q ss_pred             HHHHHhcchHHH
Q 004468          449 EALEQLCKYKEA  460 (751)
Q Consensus       449 ~~l~~l~~~~~a  460 (751)
                      .+...+....++
T Consensus       153 ~~~~~l~~~~~~  164 (169)
T d1ihga1         153 KVKQKIKAQKDK  164 (169)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            888777655544

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.78  E-value=1.2  Score=37.92  Aligned_cols=54  Identities=24%  Similarity=-0.035  Sum_probs=48.4

Q ss_pred             hhhHHHhhHHHhcCCCCCcchHHHHHHHHHHhcchHHHHHHHHHhcccCCCChh
Q 004468          423 AQMAIRDCYNARRIDSSSFRAHLYMSEALEQLCKYKEALDFAIAAQCLDPSNSV  476 (751)
Q Consensus       423 ~y~al~d~~~a~~~~~~~~~a~~~~~~~l~~l~~~~~a~~~~~~~~~~~p~~~~  476 (751)
                      --.|+....+++.++|.+..+++.++.|+..+|++.+|+.+...+....|....
T Consensus        26 y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~   79 (159)
T d1a17a_          26 YENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIK   79 (159)
T ss_dssp             HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchH
Confidence            345777788999999999999999999999999999999999999988897753