Citrus Sinensis ID: 004471

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-

MANHDLILGQRHNLGMGQNQQLVLGHNHIMGLNQNHDLELGQTHEHHLDLGQQNHELGLGHPHDHDLDLGQNHDQEGGDGHGYGHANELAMERKPEHGDHEMPLPAQNHELALSENNELGVSENQELDENLDLAVDQHQELAIEPVQDMDVHHSQLVVSGSPVLQVRTITPNSAFELAVGQEFPDVKSCRRALRDTAIALHFEMQTIKSDKTRFTAKCAAEGCPWRIHAAKLPGVPTFTIRTIHESHTCGGISHLGHQQASVQWVANSVEQRLRENPNYKPKEILEEIHRVHGITLSYKQAWRGKERIMAAMRGSFEEGYRLLPQYCEQVKRTNPGSIASVYGNPADNCFQRLFISFQASIYGFLNACRPLLGLDRTFLKSKYLGTLLLATGFDGDGALFPLAFGVVDEENDDNWMWFLSELHNLLEINTENMPRLTILSDRQKGIVDGVEANFPTAFHGFCMRHLSESFRKEFNNTILVNLLWEAAHALTVIEFEAKILEIEEISQDAAYWIRRIPPRLWATAYFEGTRFGHLTANIVESLNSWILEASGLPIIQMMECIRRQLMTWFNERRETSMQWTSILVPSAERRVAEALERARTYQVLRANEAEFEVISHEGTNIVDIRNRCCLCRGWQLYGLPCAHAVAALLSCRQNVHRFTESCFTVATYRKTYSQTIHPIPDKSLWKELSEGDPNASKSADIVIHPPKSLRPPGRPRKKRVRAEDRGRVKRVVHCSRCNQTGHFRTTCAAPI

cccccccccccccccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccHHHHHHHHHHHHHHHcEEEEEEEEccEEEEEEEccccccEEEEEEEEcccccEEEEEEccccEEccccccccccccccHHHHHHHHHHccccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHccccEEEEEccccccccHHHHHHHHHHccccccccccccccccEEEcccccccEEEEEEEccccccEEEEEEEEcccccccHHHHHHHHHHHHccccccccccEEEccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEccccccccccccHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHccEEEEEEccccEEEEEEEccEEEEEEccEEEccccccccccccHHHHHHHHHccccccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccc

cccccEEEccccccccccccEEEcccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccEcEEccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcEEcccHHHHHHHHHHHHHHccccEEEEEccccEEEEEEccccccEEEEEEEcccccEEEEEEEccccccccccccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHcccEEcHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHccccEEEEEccccccHHHHEEEEHHHHHHHHHHccccEEEEEccEEccccccEEEEEEEEcccccEEEEEEEEEEccccHHHHHHHHHHHHHccccccccccEEEEEcccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHccHHHHHHHHHHHHHHcHHHHHHHHHccHHHHHHHHcccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccEEEEcccEEEEEEEcccEEEEEEEccEccccccccccccHHHHHHHHHHccccHHHHHHHHccHHHHHHHHccccccccccccccccccccccccccccEEcccccccccccccccEEccccccccccEEEEEccccccccccccccccc

manhdlilgqrhnlgmgqnqqlvlghnhimglnqnhdlelgqthehhldlgqqnhelglghphdhdldlgqnhdqeggdghgyghanelamerkpehgdhemplpaqnhelalsennelgvsenqeldeNLDLAVDQHQelaiepvqdmdvhhsqlvvsgspvlqvrtitpnsafelavgqefpdvksCRRALRDTAIALHFEMQtiksdktrftakcaaegcpwrihaaklpgvptftirtiheshtcggishlghqQASVQWVANSVEQRlrenpnykpkeILEEIHRVHGITLSYKQAWRGKERIMAAMRGSFEEGYRLLPQYCEqvkrtnpgsiasvygnpadncfQRLFISFQASIYGFLNAcrpllgldrtFLKSKYLGTLLLatgfdgdgalfplafgvvdeenddNWMWFLSELHNLLeintenmprltilsdrqkgivdgveanfptafhgfCMRHLSESFRKEFNNTILVNLLWEAAHALTVIEFEAKILEIEEISQDAAYWIrripprlwatayfegtrfghLTANIVESLNSWIleasglpiIQMMECIRRQLMTWFNERRETSMQWTSILVPSAERRVAEALERARTYQVLRANEAEFEVishegtnivDIRNRcclcrgwqlyglpCAHAVAALLSCRQNVHRFTESCFTVATYRKtysqtihpipdkslwkelsegdpnasksadivihppkslrppgrprkkrvraedrgrvkrvvhcsrcnqtghfrttcaapi

MANHDLILGQRHNLGMGQNQQLVLGHNHIMGLNQNHDLELGQTHEHHLDLGQQNHELGLGHPHDHDLDLGQNHDQEGGDGHGYGHANELAMERKPEHGDHEMPLPAQNHELALSENNELGVSENQELDENLDLAVDQHQELAIEPVQDMDVHHSQLVVSGSPVLQVRTITPNSAFElavgqefpdvksCRRALRDTAIALHfemqtiksdktrFTAKCAAEGCPWRIHAAKLPGVPTFTIRTIHESHTCGGISHLGHQQASVQWVANSVEQRlrenpnykpkeiLEEIHRVHGITLSYKQAWRGKERIMAAMRGSFEEGYRLLPQYCEQVKRTNPGSIASVYGNPADNCFQRLFISFQASIYGFLNACRPLLGLDRTFLKSKYLGTLLLATGFDGDGALFPLAFGVVDEENDDNWMWFLSELHNLLEINTENMPRLTILSDRQKGIVDGVEANFPTAFHGFCMRHLSESFRKEFNNTILVNLLWEAAHALTVIEFEAKILEIEEISQDAAYWIRRIPPRLWATAYFEGTRFGHLTANIVESLNSWILEASGLPIIQMMECIRRQLMTWFNERRetsmqwtsilvpsAERRVAEALERARTYQVLRANEaefevishegtnivDIRNRCCLCRGWQLYGLPCAHAVAALLSCRQNVHRFTESCFTVATYRKTYSQTIHPIPDKSLWKELSEGDPNAsksadivihppkslrppgrprkkrvraedrgrvkrvvhcsrcnqtghfrttcaapi

MANHDLILGQRHNLGMGQNQQLVLGHNHIMGLNQNHDLELGQTHEHHLDLGQQNHELGLGHPHDHDLDLGQNHDQEGGDGHGYGHANELAMERKPEHGDHEMPLPAQNHELALSENNELGVSENQELDENLDLAVDQHQELAIEPVQDMDVHHSQLVVSGSPVLQVRTITPNSAFELAVGQEFPDVKSCRRALRDTAIALHFEMQTIKSDKTRFTAKCAAEGCPWRIHAAKLPGVPTFTIRTIHESHTCGGISHLGHQQASVQWVANSVEQRLRENPNYKPKEILEEIHRVHGITLSYKQAWRGKERIMAAMRGSFEEGYRLLPQYCEQVKRTNPGSIASVYGNPADNCFQRLFISFQASIYGFLNACRPLLGLDRTFLKSKYLGTLLLATGFDGDGALFPLAFGVVDEENDDNWMWFLSELHNLLEINTENMPRLTILSDRQKGIVDGVEANFPTAFHGFCMRHLSESFRKEFNNTILVNLLWEAAHALTVIEFEAKILEIEEISQDAAYWIRRIPPRLWATAYFEGTRFGHLTANIVESLNSWILEASGLPIIQMMECIRRQLMTWFNERRETSMQWTSILVPSaerrvaealerarTYQVLRANEAEFEVISHEGTNIVDIRNRCCLCRGWQLYGLPCAHAVAALLSCRQNVHRFTESCFTVATYRKTYSQTIHPIPDKSLWKELSEGDPNASKSADIVIHppkslrppgrprkkrvrAEDRGRVKRVVHCSRCNQTGHFRTTCAAPI

*************LGMGQNQQLVLGHNHIMGLNQNHDL******************************************************************************************************LAIEPVQDMDVHHSQLVVSGSPVLQVRTITPNSAFELAVGQEFPDVKSCRRALRDTAIALHFEMQTIKSDKTRFTAKCAAEGCPWRIHAAKLPGVPTFTIRTIHESHTCGGISHLGHQQASVQWVANSVEQRL****NYKPKEILEEIHRVHGITLSYKQAWRGKERIMAAMRGSFEEGYRLLPQYCEQVKRTNPGSIASVYGNPADNCFQRLFISFQASIYGFLNACRPLLGLDRTFLKSKYLGTLLLATGFDGDGALFPLAFGVVDEENDDNWMWFLSELHNLLEINTENMPRLTILSDRQKGIVDGVEANFPTAFHGFCMRHLSESFRKEFNNTILVNLLWEAAHALTVIEFEAKILEIEEISQDAAYWIRRIPPRLWATAYFEGTRFGHLTANIVESLNSWILEASGLPIIQMMECIRRQLMTWFNERRETSMQWTSILVPSAERRVAEALERARTYQVLRANEAEFEVISHEGTNIVDIRNRCCLCRGWQLYGLPCAHAVAALLSCRQNVHRFTESCFTVATYRKTYSQTIHPIPDKSLW********************************************RVVHCSRCNQTGHFR*******

***HDLI*GQRHNLGMGQNQQLVLGHNHI*****************************************************************************QNHELALSENNELGVSENQE********************************SGSPVLQVRTITPNSAFELAVGQEFPDVKSCRRALRDTAIALHFEMQTIKSDKTRFTAKCAAEGCPWRIHAAKLPGVPTFTIRTIHESHTCGGISHLGHQQASVQWVANSVEQRLRENPNYKPKEILEEIHRVHGITLSYKQAWRGKERIMAAMRGSFEEGYRLLPQYCEQVKRTNPGSIASVYGNPADNCFQRLFISFQASIYGFLNACRPLLGLDRTFLKSKYLGTLLLATGFDGDGALFPLAFGVVDEENDDNWMWFLSELHNLLEINTENMPRLTILSDRQKGIVDGVEANFPTAFHGFCMRHLSESFRKEFNNTILVNLLWEAAHALTVIEFEAKILEIEEISQDAAYWIRRIPPRLWATAYFEGTRFGHLTANIVESLNSWILEASGLPIIQMMECIRRQLMTWFNERRETSMQWTSILVPSAERRVAEALERARTYQVLRANEAEFEVISHEGTNIVDIRNRCCLCRGWQLYGLPCAHAVAALLSCRQNVHRFTESCFTVATYRKTYSQTIHPIPDKSLWKELSEGDPNASKSADIV*********************************RCNQTGHFR*TCA***

MANHDLILGQRHNLGMGQNQQLVLGHNHIMGLNQNHDLELGQTHEHHLDLGQQNHELGLGHPHDHDLDLGQNHDQEGGDGHGYGHANELAMERKPEHGDHEMPLPAQNHELALSENNELGVSENQELDENLDLAVDQHQELAIEPVQDMDVHHSQLVVSGSPVLQVRTITPNSAFELAVGQEFPDVKSCRRALRDTAIALHFEMQTIKSDKTRFTAKCAAEGCPWRIHAAKLPGVPTFTIRTIHESHTCGGISHLGHQQASVQWVANSVEQRLRENPNYKPKEILEEIHRVHGITLSYKQAWRGKERIMAAMRGSFEEGYRLLPQYCEQVKRTNPGSIASVYGNPADNCFQRLFISFQASIYGFLNACRPLLGLDRTFLKSKYLGTLLLATGFDGDGALFPLAFGVVDEENDDNWMWFLSELHNLLEINTENMPRLTILSDRQKGIVDGVEANFPTAFHGFCMRHLSESFRKEFNNTILVNLLWEAAHALTVIEFEAKILEIEEISQDAAYWIRRIPPRLWATAYFEGTRFGHLTANIVESLNSWILEASGLPIIQMMECIRRQLMTWFNERRETSMQWTSILVPSAERRVAEALERARTYQVLRANEAEFEVISHEGTNIVDIRNRCCLCRGWQLYGLPCAHAVAALLSCRQNVHRFTESCFTVATYRKTYSQTIHPIPDKSLWKE*********KSADIVIHPPKSL******************VKRVVHCSRCNQTGHFRTTCAAPI

*ANHDLILGQRHNLGMGQNQQLVLGHNHIMGLNQNHDLELGQTHEHHLDLGQQNHELGLGHPHDHD**************************************************NELGVSEN****************************HSQLVVSGSPVLQVRTITPNSAFELAVGQEFPDVKSCRRALRDTAIALHFEMQTIKSDKTRFTAKCAAEGCPWRIHAAKLPGVPTFTIRTIHESHTCGGISHLGHQQASVQWVANSVEQRLRENPNYKPKEILEEIHRVHGITLSYKQAWRGKERIMAAMRGSFEEGYRLLPQYCEQVKRTNPGSIASVYGNPADNCFQRLFISFQASIYGFLNACRPLLGLDRTFLKSKYLGTLLLATGFDGDGALFPLAFGVVDEENDDNWMWFLSELHNLLEINTENMPRLTILSDRQKGIVDGVEANFPTAFHGFCMRHLSESFRKEFNNTILVNLLWEAAHALTVIEFEAKILEIEEISQDAAYWIRRIPPRLWATAYFEGTRFGHLTANIVESLNSWILEASGLPIIQMMECIRRQLMTWFNERRETSMQWTSILVPSAERRVAEALERARTYQVLRANEAEFEVISHEGTNIVDIRNRCCLCRGWQLYGLPCAHAVAALLSCRQNVHRFTESCFTVATYRKTYSQTIHPIPDKSLWKELSEGDPNASKSADIVIHPPKS*******RKKRVR**DRGRVKRVVHCSRCNQT**FRTTC****

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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MANHDLILGQRHNLGMGQNQQLVLGHNHIMGLNQNHDLELGQTHEHHLDLGQQNHELGLGHPHDHDLDLGQNHDQEGGDGHGYGHANELAMERKPEHGDHEMPLPAQNHELALSENNELGVSExxxxxxxxxxxxxxxxxxxxxPVQDMDVHHSQLVVSGSPVLQVRTITPNSAFELAVGQEFPDVKSCRRALRDTAIALHFEMQTIKSDKTRFTAKCAAEGCPWRIHAAKLPGVPTFTIRTIHESHTCGGISHLGHQQASVQWVANSVEQRLRENPNYKPKEILEEIHRVHGITLSYKQAWRGKERIMAAMRGSFEEGYRLLPQYCEQVKRTNPGSIASVYGNPADNCFQRLFISFQASIYGFLNACRPLLGLDRTFLKSKYLGTLLLATGFDGDGALFPLAFGVVDEENDDNWMWFLSELHNLLEINTENMPRLTILSDRQKGIVDGVEANFPTAFHGFCMRHLSESFRKEFNNTILVNLLWEAAHALTVIEFEAKILEIEEISQDAAYWIRRIPPRLWATAYFEGTRFGHLTANIVESLNSWILEASGLPIIQMMECIRRQLMTWFNERRETSMQWTSILVPSAERRVAEALERARTYQVLRANEAEFEVISHEGTNIVDIRNRCCLCRGWQLYGLPCAHAVAALLSCRQNVHRFTESCFTVATYRKTYSQTIHPIPDKSLWKELSEGDPNASKSADIVIHPPKSLRPPGRPRKKRVRAEDRGRVKRVVHCSRCNQTGHFRTTCAAPI

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		751
225452988		749	PREDICTED: uncharacterized protein LOC10	0.996	0.998	0.905	0.0
356576716		750	PREDICTED: uncharacterized protein LOC10	0.994	0.996	0.884	0.0
356535187		752	PREDICTED: uncharacterized protein LOC10	0.996	0.994	0.875	0.0
449449645		770	PREDICTED: uncharacterized protein LOC10	0.998	0.974	0.843	0.0
356505949		758	PREDICTED: uncharacterized protein LOC10	1.0	0.990	0.833	0.0
6175165		757	Mutator-like transposase [Arabidopsis th	0.989	0.981	0.819	0.0
359479587		752	PREDICTED: uncharacterized protein LOC10	0.984	0.982	0.778	0.0
224125676		581	predicted protein [Populus trichocarpa]	0.773	1.0	0.951	0.0
224115958		572	predicted protein [Populus trichocarpa]	0.761	1.0	0.961	0.0
125537276		747	hypothetical protein OsI_38982 [Oryza sa	0.981	0.986	0.739	0.0

>gi\|225452988\|ref\|XP_002262784.1\| PREDICTED: uncharacterized protein LOC100258751 [Vitis vinifera] gi\|147858253\|emb\|CAN83921.1\| hypothetical protein VITISV_011842 [Vitis vinifera]	Back alignment and taxonomy information

 Score = 1416 bits (3665), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 681/752 (90%), Positives = 706/752 (93%), Gaps = 4/752 (0%)

Query: 1   MANHDLILGQRHNLGMGQNQQLVLGHNHIMGLNQNHDLELGQTHEHHLDLGQQ-NHELGL 59
           MANHDLILG  HNLG+GQNQQLVLGHNH +GL QNH LELGQTHEH L LG   +HELGL
Sbjct: 1   MANHDLILGPNHNLGLGQNQQLVLGHNHNLGLGQNHTLELGQTHEHDLGLGHSHDHELGL 60

Query: 60  GHPHDHDLDLGQNHDQEGGDGHGYGHANELAMERKPEHGDHEMPLPAQNHELALSENNEL 119
            H HDHDL LGQ   Q G D HGY H NELAM+RKPEH DH + L  QNHELALSENNEL
Sbjct: 61  SHAHDHDLGLGQTVHQ-GADEHGYEHGNELAMDRKPEHDDHGLSLAEQNHELALSENNEL 119

Query: 120 GVSENQELDENLDLAVDQHQELAIEPVQDMDVHHSQLVVSGSPVLQVRTITPNSAFELAV 179
            VSENQELD+NLDLAVD HQE+ IE   DM V   QLVVS +PVLQ RT+  N ++EL V
Sbjct: 120 AVSENQELDDNLDLAVDDHQEMGIESTSDM-VQQHQLVVS-TPVLQARTVVANPSYELVV 177

Query: 180 GQEFPDVKSCRRALRDTAIALHFEMQTIKSDKTRFTAKCAAEGCPWRIHAAKLPGVPTFT 239
           GQEFPDVKSCRRALRDTAIALHFEMQTIKSDKTRFTAKCA++GCPWRIHAAKLPGVPTFT
Sbjct: 178 GQEFPDVKSCRRALRDTAIALHFEMQTIKSDKTRFTAKCASDGCPWRIHAAKLPGVPTFT 237

Query: 240 IRTIHESHTCGGISHLGHQQASVQWVANSVEQRLRENPNYKPKEILEEIHRVHGITLSYK 299
           IRTIHE+HTCGGI+HLGHQQASVQWVANSVEQRLRENPNYKPKEILEEIHRVHGITLSYK
Sbjct: 238 IRTIHEAHTCGGIAHLGHQQASVQWVANSVEQRLRENPNYKPKEILEEIHRVHGITLSYK 297

Query: 300 QAWRGKERIMAAMRGSFEEGYRLLPQYCEQVKRTNPGSIASVYGNPADNCFQRLFISFQA 359
           QAWRGKERIMAAMRGSFEEGYRLLPQYC+QVKRTNPGSIASVYGNP DNCFQRLFISFQA
Sbjct: 298 QAWRGKERIMAAMRGSFEEGYRLLPQYCDQVKRTNPGSIASVYGNPTDNCFQRLFISFQA 357

Query: 360 SIYGFLNACRPLLGLDRTFLKSKYLGTLLLATGFDGDGALFPLAFGVVDEENDDNWMWFL 419
           SIYGFLNACRPLLGLDRTFLKSKYLGTLL ATGFDGDGALFPLAFGVVDEEND+NWMWFL
Sbjct: 358 SIYGFLNACRPLLGLDRTFLKSKYLGTLLFATGFDGDGALFPLAFGVVDEENDENWMWFL 417

Query: 420 SELHNLLEINTENMPRLTILSDRQKGIVDGVEANFPTAFHGFCMRHLSESFRKEFNNTIL 479
           SELHNLLE+NTENMPRLTILSDRQKGIVDGVEANFPTAFHGFCMRHLS+SFRKEFNNT+L
Sbjct: 418 SELHNLLEVNTENMPRLTILSDRQKGIVDGVEANFPTAFHGFCMRHLSDSFRKEFNNTML 477

Query: 480 VNLLWEAAHALTVIEFEAKILEIEEISQDAAYWIRRIPPRLWATAYFEGTRFGHLTANIV 539
           VNLLWEAAHALTVIEFEAKILEIEEISQDAAYWIRRIPPRLWATAYFEGTRFGHLTANIV
Sbjct: 478 VNLLWEAAHALTVIEFEAKILEIEEISQDAAYWIRRIPPRLWATAYFEGTRFGHLTANIV 537

Query: 540 ESLNSWILEASGLPIIQMMECIRRQLMTWFNERRETSMQWTSILVPSAERRVAEALERAR 599
           ESLN+WILEASGLPIIQMMECIRRQLMTWFNERRETSMQWTSILVPSAERRVAEALERAR
Sbjct: 538 ESLNTWILEASGLPIIQMMECIRRQLMTWFNERRETSMQWTSILVPSAERRVAEALERAR 597

Query: 600 TYQVLRANEAEFEVISHEGTNIVDIRNRCCLCRGWQLYGLPCAHAVAALLSCRQNVHRFT 659
           TYQVLRANEAEFEVISHEGTNIVDIRNRCCLCRGWQLYGLPCAHAVAALLSCRQNVHRFT
Sbjct: 598 TYQVLRANEAEFEVISHEGTNIVDIRNRCCLCRGWQLYGLPCAHAVAALLSCRQNVHRFT 657

Query: 660 ESCFTVATYRKTYSQTIHPIPDKSLWKELSEGDPNASKSADIVIHPPKSLRPPGRPRKKR 719
           ESCFTVATYRKTYSQTIHPIPDK+LWKELSEGDPN SKS +I+I+PPKSLRPPGRPRKKR
Sbjct: 658 ESCFTVATYRKTYSQTIHPIPDKTLWKELSEGDPNGSKSVEIMINPPKSLRPPGRPRKKR 717

Query: 720 VRAEDRGRVKRVVHCSRCNQTGHFRTTCAAPI 751
           VRAEDRGRVKRVVHCSRCNQTGHFRTTCAAPI
Sbjct: 718 VRAEDRGRVKRVVHCSRCNQTGHFRTTCAAPI 749

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|356576716\|ref\|XP_003556476.1\| PREDICTED: uncharacterized protein LOC100811471 isoform 1 [Glycine max] gi\|356576718\|ref\|XP_003556477.1\| PREDICTED: uncharacterized protein LOC100811471 isoform 2 [Glycine max]	Back alignment and taxonomy information

>gi\|356535187\|ref\|XP_003536130.1\| PREDICTED: uncharacterized protein LOC100786116 [Glycine max]	Back alignment and taxonomy information

>gi\|449449645\|ref\|XP_004142575.1\| PREDICTED: uncharacterized protein LOC101203810 [Cucumis sativus] gi\|449532723\|ref\|XP_004173330.1\| PREDICTED: uncharacterized LOC101203810 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|356505949\|ref\|XP_003521751.1\| PREDICTED: uncharacterized protein LOC100795835 [Glycine max]	Back alignment and taxonomy information

>gi\|6175165\|gb\|AAF04891.1\|AC011437_6 Mutator-like transposase [Arabidopsis thaliana] gi\|18389286\|gb\|AAL67086.1\| putative Mutator transposase [Arabidopsis thaliana] gi\|20465953\|gb\|AAM20162.1\| putative mutator transposase [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|359479587\|ref\|XP_003632297.1\| PREDICTED: uncharacterized protein LOC100261309 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224125676\|ref\|XP_002319648.1\| predicted protein [Populus trichocarpa] gi\|222858024\|gb\|EEE95571.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|224115958\|ref\|XP_002332013.1\| predicted protein [Populus trichocarpa] gi\|222875238\|gb\|EEF12369.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|125537276\|gb\|EAY83764.1\| hypothetical protein OsI_38982 [Oryza sativa Indica Group]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		751
TAIR\|locus:2014230		719	AT1G64260 "AT1G64260" [Arabido	0.661	0.691	0.258	1.4e-38
TAIR\|locus:2197122		785	AT1G49920 "AT1G49920" [Arabido	0.458	0.438	0.267	4.8e-33
TAIR\|locus:1006230722		750	AT1G64255 [Arabidopsis thalian	0.673	0.674	0.230	9.6e-31
UNIPROTKB\|E2R886		416	KNG1 "Uncharacterized protein"	0.114	0.206	0.351	0.00013
MGI\|MGI:1097705		661	Kng1 "kininogen 1" [Mus muscul	0.098	0.111	0.382	0.00034
DICTYBASE\|DDB_G0278963		1334	DDB_G0278963 [Dictyostelium di	0.191	0.107	0.261	0.00081
TAIR\|locus:2121060		788	FRS5 "FAR1-related sequence 5"	0.294	0.280	0.236	0.00097

TAIR\|locus:2014230 AT1G64260 "AT1G64260" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 438 (159.2 bits), Expect = 1.4e-38, P = 1.4e-38
 Identities = 138/533 (25%), Positives = 233/533 (43%)

Query:   176 ELAVGQEFPDVKSCRRALRDTAIALHFEMQTIKSDKTRFTAKCAAEGCPWRIHAAKLPGV 235
             ++ +G  F D    ++A+    I         +++K  +T +C    C W + AA++   
Sbjct:   184 DMHLGLCFKDRDELKKAVDWWCIRRRRNCIVRETEKEMYTFECVRWKCKWSLRAARMEEH 243

Query:   236 PTFTIRTIHESHTCGGISHLGHQQASVQWVANSVEQRLRENPNYKPKEILEEIHRVHGIT 295
                 I      HTC   SH        ++ A+ +E+ +R  P     E+ +      G  
Sbjct:   244 GLVEITKYTGPHTC---SHEYPNDFESEFAADEIERVVRIQPTLSIAELKKWWKEKTGYE 300

Query:   296 LSYKQAWRGKERIMAAMRGSFEEGYRLLPQYCEQVKRTNPGSIAS----VYGNPADNCFQ 351
             L   +   GK  ++  + G  ++ +R++P+       +N G +      ++ NP    F+
Sbjct:   301 LQTSKMRDGKLEVIKRVFGDEDQSFRVMPKLISAFHSSN-GLLVDWQYDLFPNPDFASFR 359

Query:   352 RLFISFQASIYGFLNACRPLLGLDRTFLKSKYLGTLLLATGFDGDGALFPLAFGVVDEEN 411
              +F SF  SI GF + CRPL+ +D   L  KY   L++A+G D     FPLAF V  E +
Sbjct:   360 GVFWSFSQSIEGFQH-CRPLIVVDTKSLNGKYQLKLMIASGVDAANKFFPLAFAVTKEVS 418

Query:   412 DDNWMWFLSELHNLLEINTENMPRLTILSDRQKGIVDGVEA-----NFPTAFHGFCMRHL 466
              D+W WF +++   +   T+    L ++S   + IV  V         P A H FC+ HL
Sbjct:   419 TDSWRWFFTKIREKV---TQRKD-LCLISSPLRDIVAVVNEPGSLWQEPWAHHKFCLNHL 474

Query:   467 SESFRKEFNNTILVNLLWEAAHALTVIEFEAKILEIEEISQDAAYWIRRIPPRLWATAYF 526
                F   F +  L +L+ +A       EF++ + +I+E + +A  W+ +IP   WA A+ 
Sbjct:   475 RSQFLGVFRDYNLESLVEQAGSTNQKEEFDSYMNDIKEKNPEAWKWLDQIPRHKWALAHD 534

Query:   527 EGTRFGHLTANIVESLNSWILEASGLPIIQMMECIRRQLMTWFNERRET-----SMQWTS 581
              G R+G +  +  E+L        G P   +   +   +M  F+E R +     S  ++S
Sbjct:   535 SGLRYGIIEIDR-EAL---FAVCRGFPYCTV--AMTGGVMLMFDELRSSFDKSLSSIYSS 588

Query:   582 -----ILVPSXXXXXXXXXXXXXTYQVLRANEAEFEVI-SHEGTN-IVDIRNRCCLCRGW 634
                  +                  Y + +     F+V  S E    IV +    C CR +
Sbjct:   589 LNRGVVYTEPFMDKLEEFMTDSIPYVITQLERDSFKVSESSEKEEWIVQLNVSTCTCRKF 648

Query:   635 QLYGLPCAHAVAALLSCRQNVHRFTESCFTVATYRKTYSQTIHPIPDKSLWKE 687
             Q Y  PC HA+A     + N  ++ + C+TV  Y KTY+ T  P+PD + W E
Sbjct:   649 QSYKFPCLHALAVFEKLKINPLQYVDECYTVEQYCKTYAATFSPVPDVAAWPE 701

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

TAIR\|locus:2197122 AT1G49920 "AT1G49920" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:1006230722 AT1G64255 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|E2R886 KNG1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

MGI\|MGI:1097705 Kng1 "kininogen 1" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0278963 DDB_G0278963 [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

TAIR\|locus:2121060 FRS5 "FAR1-related sequence 5" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	gw1.XIII.1587.1	hypothetical protein (581 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		751
pfam03108		67	pfam03108, DBD_Tnp_Mut, MuDR family transposase	3e-24
pfam10551		88	pfam10551, MULE, MULE transposase domain	3e-21
smart00575		28	smart00575, ZnF_PMZ, plant mutator transposase zin	3e-07
pfam04434		38	pfam04434, SWIM, SWIM zinc finger	2e-05

>gnl\|CDD\|190526 pfam03108, DBD_Tnp_Mut, MuDR family transposase	Back alignment and domain information

 Score = 96.1 bits (240), Expect = 3e-24
 Identities = 33/65 (50%), Positives = 41/65 (63%)

Query: 176 ELAVGQEFPDVKSCRRALRDTAIALHFEMQTIKSDKTRFTAKCAAEGCPWRIHAAKLPGV 235
           EL VGQ F   +  ++A+R  AI   FE +  KSDKTR+ AKC  EGCPWR+ A+KL   
Sbjct: 3   ELEVGQVFKSKEEFKKAVRKYAIKNRFEFKVKKSDKTRYRAKCKDEGCPWRVRASKLKDS 62

Query: 236 PTFTI 240
            TF I
Sbjct: 63  DTFQI 67

This region is found in plant proteins that are presumed to be the transposases for Mutator transposable elements. These transposons contain two ORFs. The molecular function of this region is unknown. Length = 67

>gnl\|CDD\|220806 pfam10551, MULE, MULE transposase domain	Back alignment and domain information

>gnl\|CDD\|128845 smart00575, ZnF_PMZ, plant mutator transposase zinc finger	Back alignment and domain information

>gnl\|CDD\|218087 pfam04434, SWIM, SWIM zinc finger	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		751
PLN03097		846	FHY3 Protein FAR-RED ELONGATED HYPOCOTYL 3; Provis	100.0
PF10551		93	MULE: MULE transposase domain; InterPro: IPR018289	99.84
PF00872		381	Transposase_mut: Transposase, Mutator family; Inte	99.74
PF03108		67	DBD_Tnp_Mut: MuDR family transposase; InterPro: IP	99.64
COG3328		379	Transposase and inactivated derivatives [DNA repli	99.24
PF08731		111	AFT: Transcription factor AFT; InterPro: IPR014842	98.79
smart00575		28	ZnF_PMZ plant mutator transposase zinc finger.	98.78
PF03101		91	FAR1: FAR1 DNA-binding domain; InterPro: IPR004330	98.66
PF04434		40	SWIM: SWIM zinc finger; InterPro: IPR007527 Zinc f	97.98
PF00098		18	zf-CCHC: Zinc knuckle; InterPro: IPR001878 Zinc fi	96.01
PF15288		40	zf-CCHC_6: Zinc knuckle	95.3
PF01610		249	DDE_Tnp_ISL3: Transposase; InterPro: IPR002560 Aut	94.62
PF06782		470	UPF0236: Uncharacterised protein family (UPF0236);	93.86
PF13696		32	zf-CCHC_2: Zinc knuckle	93.15
PF03106		60	WRKY: WRKY DNA -binding domain; InterPro: IPR00365	92.74
PF13610		140	DDE_Tnp_IS240: DDE domain	92.53
PF04684		496	BAF1_ABF1: BAF1 / ABF1 chromatin reorganising fact	92.3
PRK14702		262	insertion element IS2 transposase InsD; Provisiona	90.41
smart00774		59	WRKY DNA binding domain. The WRKY domain is a DNA	87.04
PF00665		120	rve: Integrase core domain; InterPro: IPR001584 In	85.49
PF04500		62	FLYWCH: FLYWCH zinc finger domain; InterPro: IPR00	84.92
smart00343		26	ZnF_C2HC zinc finger.	83.96
PRK09409		301	IS2 transposase TnpB; Reviewed	82.45
PF03050		271	DDE_Tnp_IS66: Transposase IS66 family ; InterPro:	80.85
PHA02517		277	putative transposase OrfB; Reviewed	80.44

>PLN03097 FHY3 Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional	Back alignment and domain information

Probab=100.00  E-value=1e-75  Score=676.38  Aligned_cols=472  Identities=15%  Similarity=0.269  Sum_probs=381.7

Q ss_pred             CCCccccCCeeCCHHHHHHHHHHHHHhcCeeEEEEeecCcE-------EEEEec--------------------------
Q 004471          173 SAFELAVGQEFPDVKSCRRALRDTAIALHFEMQTIKSDKTR-------FTAKCA--------------------------  219 (751)
Q Consensus       173 ~~~~~~vG~~F~s~ee~~~a~~~yAi~~gf~i~~~ks~~~r-------~~~~C~--------------------------  219 (751)
                      ...+|.+||+|+|.++|+.||+.||...||++|+.++.+++       .+++|+                          
T Consensus        70 ~~~~P~vGMeF~S~eeA~~FYn~YA~~~GFsVRi~~srrsk~~~~ii~r~fvCsreG~~~~~~~~~~~~~~~~~k~~~~~  149 (846)
T PLN03097         70 TNLEPLSGMEFESHGEAYSFYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGTKREYDKSFNRPRARQTKQDPEN  149 (846)
T ss_pred             CCccCcCCCeECCHHHHHHHHHHHHhhcCceEEeeceeccCCCCcEEEEEEEEcCCCCCcccccccccccccccccCccc
Confidence            55689999999999999999999999999999986554322       345664                          


Q ss_pred             --------CCCCceEEEEEEcCCCCcEEEEeecCCccccCccccCcccchhhHHhhhhhhhhccCCCCChHHHHHHHHHH
Q 004471          220 --------AEGCPWRIHAAKLPGVPTFTIRTIHESHTCGGISHLGHQQASVQWVANSVEQRLRENPNYKPKEILEEIHRV  291 (751)
Q Consensus       220 --------~~gC~w~i~a~~~~~~~~w~I~~~~~~Hnc~~~~~~~~r~~ss~~ia~~~~~~i~~~~~~~~~~I~~~l~~~  291 (751)
                              ++||||+|++++. ..|.|+|+.+..+|||+..+......-+.+ +-..+...+....++..      ++..
T Consensus       150 ~~~rR~~tRtGC~A~m~Vk~~-~~gkW~V~~fv~eHNH~L~p~~~~~~~~r~-~~~~~~~~~~~~~~v~~------~~~d  221 (846)
T PLN03097        150 GTGRRSCAKTDCKASMHVKRR-PDGKWVIHSFVKEHNHELLPAQAVSEQTRK-MYAAMARQFAEYKNVVG------LKND  221 (846)
T ss_pred             ccccccccCCCCceEEEEEEc-CCCeEEEEEEecCCCCCCCCccccchhhhh-hHHHHHhhhhccccccc------cchh
Confidence                    3579999999884 458999999999999987643211000001 10000000000000000      0000


Q ss_pred             hCCccCHHHHHHHHHHHHHHHhcchHhhhccHHHHHHHHHhcCCCcEEEEEccCCcCceeEEEEEehhhHHHHHhhcCCc
Q 004471          292 HGITLSYKQAWRGKERIMAAMRGSFEEGYRLLPQYCEQVKRTNPGSIASVYGNPADNCFQRLFISFQASIYGFLNACRPL  371 (751)
Q Consensus       292 ~g~~~s~~~~~rak~~~~~~~~g~~~~~~~~L~~~~~~l~~~npg~~~~v~~~~~~~~f~~lf~~~~~~~~~~~~~~~~V  371 (751)
                           ........|.  ++...||    .+.|+.||.+++..||+|+|.|++| +++++++|||+++.|+.+| .+|+||
T Consensus       222 -----~~~~~~~~r~--~~~~~gD----~~~ll~yf~~~q~~nP~Ffy~~qlD-e~~~l~niFWaD~~sr~~Y-~~FGDv  288 (846)
T PLN03097        222 -----SKSSFDKGRN--LGLEAGD----TKILLDFFTQMQNMNSNFFYAVDLG-EDQRLKNLFWVDAKSRHDY-GNFSDV  288 (846)
T ss_pred             -----hcchhhHHHh--hhcccch----HHHHHHHHHHHHhhCCCceEEEEEc-cCCCeeeEEeccHHHHHHH-HhcCCE
Confidence                 0000111121  2222343    4789999999999999999999996 8999999999999999999 999999


Q ss_pred             eeeeeeeeccccCcceEEEEEecCCCCeEEEEEEEeecCchhhHHHHHHHHHHHhccccCCCCceEEeecCccccccccc
Q 004471          372 LGLDRTFLKSKYLGTLLLATGFDGDGALFPLAFGVVDEENDDNWMWFLSELHNLLEINTENMPRLTILSDRQKGIVDGVE  451 (751)
Q Consensus       372 v~iD~T~~~~~y~~~ll~~~g~d~~~~~~~la~alv~~E~~es~~w~l~~l~~~~~~~~~~~~p~~iitD~~~~l~~Ai~  451 (751)
                      |.||+||+||+|++||+.|+|+|+|+++++|||||+.+|+.++|.|+|++|+++|+    +.+|.+||||++.+|.+||+
T Consensus       289 V~fDTTY~tN~y~~Pfa~FvGvNhH~qtvlfGcaLl~dEt~eSf~WLf~tfl~aM~----gk~P~tIiTDqd~am~~AI~  364 (846)
T PLN03097        289 VSFDTTYVRNKYKMPLALFVGVNQHYQFMLLGCALISDESAATYSWLMQTWLRAMG----GQAPKVIITDQDKAMKSVIS  364 (846)
T ss_pred             EEEeceeeccccCcEEEEEEEecCCCCeEEEEEEEcccCchhhHHHHHHHHHHHhC----CCCCceEEecCCHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999    57899999999999999999


Q ss_pred             ccCCCCceecchhhHHHHHHHHcCc-----hhHHHHHHHHHH-hcCHHHHHHHHHHHHHh-cHHHHHHHhhc--CCCcee
Q 004471          452 ANFPTAFHGFCMRHLSESFRKEFNN-----TILVNLLWEAAH-ALTVIEFEAKILEIEEI-SQDAAYWIRRI--PPRLWA  522 (751)
Q Consensus       452 ~vfP~a~h~~C~~Hi~~n~~~~~~~-----~~~~~~~~~~~~-a~t~~eF~~~~~~l~~~-~~~~~~~L~~~--~~~~Wa  522 (751)
                      +|||+|.|++|+|||++|+.+++..     +.|...|+.|++ +.+++||+..|..|.+. +...++||..+  .|++||
T Consensus       365 ~VfP~t~Hr~C~wHI~~~~~e~L~~~~~~~~~f~~~f~~cv~~s~t~eEFE~~W~~mi~ky~L~~n~WL~~LY~~RekWa  444 (846)
T PLN03097        365 EVFPNAHHCFFLWHILGKVSENLGQVIKQHENFMAKFEKCIYRSWTEEEFGKRWWKILDRFELKEDEWMQSLYEDRKQWV  444 (846)
T ss_pred             HHCCCceehhhHHHHHHHHHHHhhHHhhhhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcccccHHHHHHHHhHhhhh
Confidence            9999999999999999999998863     589999999988 88999999999998865 77899999999  699999


Q ss_pred             ecccCCCccccc-ccchhhHHHHHHhhc--cCCcHHHHHHHHHHHHHHHHHHhhhh-----------------hcccccc
Q 004471          523 TAYFEGTRFGHL-TANIVESLNSWILEA--SGLPIIQMMECIRRQLMTWFNERRET-----------------SMQWTSI  582 (751)
Q Consensus       523 ~ay~~~~~~g~~-Ttn~~ES~n~~lk~~--r~~pi~~lle~i~~~l~~~~~~r~~~-----------------s~~~~~~  582 (751)
                      ++|+++.+|+.| ||+++||+|++|++.  +..+|..|++++.+.+..++.+..+.                 ..+.+.+
T Consensus       445 paY~k~~F~agm~sTqRSES~Ns~fk~yv~~~tsL~~Fv~qye~~l~~~~ekE~~aD~~s~~~~P~l~t~~piEkQAs~i  524 (846)
T PLN03097        445 PTYMRDAFLAGMSTVQRSESINAFFDKYVHKKTTVQEFVKQYETILQDRYEEEAKADSDTWNKQPALKSPSPLEKSVSGV  524 (846)
T ss_pred             HHHhcccccCCcccccccccHHHHHHHHhCcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCcccccccHHHHHHHHH
Confidence            999999998766 788999999999985  57899999999988877665544332                 1244679


Q ss_pred             cchHHHHHHHHHHHHhcccEEEecc----CceEEEEe--cCcceEEeee----CccccCCcccccCCccccHHHHHHhcC
Q 004471          583 LVPSAERRVAEALERARTYQVLRAN----EAEFEVIS--HEGTNIVDIR----NRCCLCRGWQLYGLPCAHAVAALLSCR  652 (751)
Q Consensus       583 ~tp~~~~~~~~~~~~a~~~~V~~~~----~~~f~V~~--~~~~~~V~l~----~~~CsC~~~~~~GiPC~H~lavl~~~~  652 (751)
                      |||.+|++|++++..+..|.+...+    ..+|.|..  ....|.|..+    ..+|+|++|+..||||+|||.||...+
T Consensus       525 YT~~iF~kFQ~El~~~~~~~~~~~~~dg~~~~y~V~~~~~~~~~~V~~d~~~~~v~CsC~kFE~~GILCrHaLkVL~~~~  604 (846)
T PLN03097        525 YTHAVFKKFQVEVLGAVACHPKMESQDETSITFRVQDFEKNQDFTVTWNQTKLEVSCICRLFEYKGYLCRHALVVLQMCQ  604 (846)
T ss_pred             hHHHHHHHHHHHHHHhhheEEeeeccCCceEEEEEEEecCCCcEEEEEecCCCeEEeeccCeecCccchhhHHHHHhhcC
Confidence            9999999999999999888876543    25788876  3456777543    579999999999999999999999999


Q ss_pred             C--Ccccccccccchhccc
Q 004471          653 Q--NVHRFTESCFTVATYR  669 (751)
Q Consensus       653 ~--~~~~yv~~~yt~~~~~  669 (751)
                      +  .|+.||.+|||+++-.
T Consensus       605 v~~IP~~YILkRWTKdAK~  623 (846)
T PLN03097        605 LSAIPSQYILKRWTKDAKS  623 (846)
T ss_pred             cccCchhhhhhhchhhhhh
Confidence            8  5999999999988753

>PF10551 MULE: MULE transposase domain; InterPro: IPR018289 This entry represents a domain found in Mutator-like elements (MULE)-encoded tranposases, some of which also contain a zinc-finger motif [, ]	Back alignment and domain information

>PF00872 Transposase_mut: Transposase, Mutator family; InterPro: IPR001207 Autonomous mobile genetic elements such as transposon or insertion sequences (IS) encode an enzyme, transposase, that is required for excising and inserting the mobile element	Back alignment and domain information

>PF03108 DBD_Tnp_Mut: MuDR family transposase; InterPro: IPR004332 The plant MuDR transposase domain is present in plant proteins that are presumed to be the transposases for Mutator transposable elements [, ]	Back alignment and domain information

>COG3328 Transposase and inactivated derivatives [DNA replication, recombination, and repair]	Back alignment and domain information

>PF08731 AFT: Transcription factor AFT; InterPro: IPR014842 AFT (activator of iron transcription) is an iron regulated transcriptional activator that regulates the expression of genes involved in iron homeostasis	Back alignment and domain information

>smart00575 ZnF_PMZ plant mutator transposase zinc finger	Back alignment and domain information

>PF03101 FAR1: FAR1 DNA-binding domain; InterPro: IPR004330 Phytochrome A is the primary photoreceptor for mediating various far-red light-induced responses in higher plants	Back alignment and domain information

>PF04434 SWIM: SWIM zinc finger; InterPro: IPR007527 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule	Back alignment and domain information

>PF00098 zf-CCHC: Zinc knuckle; InterPro: IPR001878 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule	Back alignment and domain information

>PF15288 zf-CCHC_6: Zinc knuckle	Back alignment and domain information

>PF01610 DDE_Tnp_ISL3: Transposase; InterPro: IPR002560 Autonomous mobile genetic elements such as transposon or insertion sequences (IS) encode an enzyme, transposase, that is required for excising and inserting the mobile element	Back alignment and domain information

>PF06782 UPF0236: Uncharacterised protein family (UPF0236); InterPro: IPR009620 This is a group of proteins of unknown function	Back alignment and domain information

>PF13696 zf-CCHC_2: Zinc knuckle	Back alignment and domain information

>PF03106 WRKY: WRKY DNA -binding domain; InterPro: IPR003657 The WRKY domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger- like motif	Back alignment and domain information

>PF13610 DDE_Tnp_IS240: DDE domain	Back alignment and domain information

>PF04684 BAF1_ABF1: BAF1 / ABF1 chromatin reorganising factor; InterPro: IPR006774 ABF1 is a sequence-specific DNA binding protein involved in transcription activation, gene silencing and initiation of DNA replication	Back alignment and domain information

>PRK14702 insertion element IS2 transposase InsD; Provisional	Back alignment and domain information

>smart00774 WRKY DNA binding domain	Back alignment and domain information

>PF00665 rve: Integrase core domain; InterPro: IPR001584 Integrase comprises three domains capable of folding independently and whose three-dimensional structures are known	Back alignment and domain information

>PF04500 FLYWCH: FLYWCH zinc finger domain; InterPro: IPR007588 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule	Back alignment and domain information

>smart00343 ZnF_C2HC zinc finger	Back alignment and domain information

>PRK09409 IS2 transposase TnpB; Reviewed	Back alignment and domain information

>PF03050 DDE_Tnp_IS66: Transposase IS66 family ; InterPro: IPR004291 Transposase proteins are necessary for efficient DNA transposition	Back alignment and domain information

>PHA02517 putative transposase OrfB; Reviewed	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		751
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 50.2 bits (119), Expect = 2e-06
 Identities = 90/693 (12%), Positives = 178/693 (25%), Gaps = 237/693 (34%)

Query: 44  HEHHLD--LGQQNHELG--LGHPHD---HDLDLGQNHDQEGGDGHGYGHANELAMER--- 93
           H HH+D   G+  ++    L    D    + D     D                M +   
Sbjct: 3   HHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQD----------------MPKSIL 46

Query: 94  KPEHGDHEMPLPAQNHEL-----ALSENNELGVSE--NQELDENLDLAVDQHQELAIEPV 146
             E  DH +               L    E  V +   + L  N    +   +    +P 
Sbjct: 47  SKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPS 106

Query: 147 QDMDVHHSQL--------------VVSGSPVLQVRTITPNSAFELAVGQEFPDV------ 186
               ++  Q               V    P L++R     +  EL   +   +V      
Sbjct: 107 MMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLR----QALLEL---RPAKNVLIDGVL 159

Query: 187 ---KSC--RRALRDTAIALHFEMQTIKSDKTRFTAKCAAEGCPWRIHAAKLPGVPTFTIR 241
              K+           +                          ++I    L    +    
Sbjct: 160 GSGKTWVALDVCLSYKVQCKM---------------------DFKIFWLNLKNCNSPETV 198

Query: 242 TIHESHTCGGISHLGHQQA----SVQWVANSVEQRLRE---NPNYKP----------KEI 284
                     I      ++    +++   +S++  LR    +  Y+            + 
Sbjct: 199 LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKA 258

Query: 285 LE--EIH-------RVHGITLSYKQAWRGKERIMAAMRGSFEEGYRL------------- 322
                +        R   +T  +  A       +     +                    
Sbjct: 259 WNAFNLSCKILLTTRFKQVT-DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD 317

Query: 323 LPQYCEQVKRTNPGSI----ASVYGNPA--DNCFQRLFIS-FQASIYGFLNACRPLLGLD 375
           LP    +V  TNP  +     S+    A  DN ++ +        I   LN       L+
Sbjct: 318 LP---REVLTTNPRRLSIIAESIRDGLATWDN-WKHVNCDKLTTIIESSLNV------LE 367

Query: 376 RTFLKSKYLGTLLLATGFDGDGALFP------------LAFGVVDEENDDNWMWFLSELH 423
               +  +              ++FP            + F V+  +        +++LH
Sbjct: 368 PAEYRKMFD-----------RLSVFPPSAHIPTILLSLIWFDVIKSDVMV----VVNKLH 412

Query: 424 N--LLEINTENMPRLTI--LSDRQKGIVDGVEANFPTAFHGFCMRHLSESF---RKEFNN 476
              L+E   +    ++I  +    K  ++        A H    R + + +   +   ++
Sbjct: 413 KYSLVEKQPKES-TISIPSIYLELKVKLENE-----YALH----RSIVDHYNIPKTFDSD 462

Query: 477 TILVNLL-----WEAAHALTVIEFEAKILEIEEISQDAAYWIRRIPPRLWATAYFEGTRF 531
            ++   L         H L  IE   ++     +  D                 F   RF
Sbjct: 463 DLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLD-----------------F---RF 502

Query: 532 GHLTANIVESLNSWILEASGLPIIQMMECIRRQLMTWFNERRETSMQWTSILVPSAERRV 591
             L   I     +W    S L  +Q ++  +  +    N+             P  ER V
Sbjct: 503 --LEQKIRHDSTAWNASGSILNTLQQLKFYKPYICD--ND-------------PKYERLV 545

Query: 592 AEALERARTYQVLRANEAEFEVISHEGTNIVDI 624
              L+             E  +I  + T+++ I
Sbjct: 546 NAILDFLPKI--------EENLICSKYTDLLRI 570

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		751
1nc8_A		29	Nucleocapsid protein; HIV-2, RNA recognition, zinc	95.86
1a6b_B		40	Momulv, zinc finger protein NCP10; nucleocapsid pr	95.34
1u6p_A		56	GAG polyprotein; MLV, A-minor K-turn, stem loop, b	95.05
1dsq_A		26	Nucleic acid binding protein P14; CCHC type zinc f	94.47
2ayd_A		76	WRKY transcription factor 1; beta strands, zinc fi	93.03
2ec7_A		49	GAG polyprotein (PR55GAG); nucleocapsid protein, H	92.63
1wj2_A		78	Probable WRKY transcription factor 4; DNA-binding	91.44
2a51_A		39	Nucleocapsid protein; sivlhoest, structure, NCP8,	89.38
2bl6_A		37	Nucleocapsid protein P11; lentivirus, polyprotein,	88.47
2a51_A		39	Nucleocapsid protein; sivlhoest, structure, NCP8,	88.27
1a1t_A		55	Nucleocapsid protein; stem-loop RNA, viral protein	86.79
2ysa_A		55	Retinoblastoma-binding protein 6; zinc finger, CCH	85.05
2bl6_A		37	Nucleocapsid protein P11; lentivirus, polyprotein,	82.31
2cqf_A		63	RNA-binding protein LIN-28; CCHC zinc-finger, stru	81.98
2ec7_A		49	GAG polyprotein (PR55GAG); nucleocapsid protein, H	80.89
1a1t_A		55	Nucleocapsid protein; stem-loop RNA, viral protein	80.62
2li8_A		74	Protein LIN-28 homolog A; zinc finger, micro RNA,	80.26
2ihx_A		61	Nucleocapsid (NC) protein; protein-RNA complex, vi	80.2

>1nc8_A Nucleocapsid protein; HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus 2} SCOP: g.40.1.1 PDB: 2di2_A	Back alignment and structure

Probab=95.86  E-value=0.0031  Score=40.88  Aligned_cols=23  Identities=35%  Similarity=0.908  Sum_probs=20.4

Q ss_pred             CcceeeCcccCcCCCCCCCCCCC
Q 004471          728 VKRVVHCSRCNQTGHFRTTCAAP  750 (751)
Q Consensus       728 ~k~~~~Cs~C~~~GHn~rtC~~~  750 (751)
                      +++..+|-+|++.||..+.|+.|
T Consensus         3 ~r~~~~C~nCgk~GH~ar~C~~p   25 (29)
T 1nc8_A            3 QRKVIRCWNCGKEGHSARQCRAP   25 (29)
T ss_dssp             CCCCCBCTTTSCBSSCGGGCCSS
T ss_pred             CCCCCEEEECCccccCHhHCccc
Confidence            45668899999999999999987

PyMOL of 1nc8

>1a6b_B Momulv, zinc finger protein NCP10; nucleocapsid protein, intercalation, nucleic acid, retrovirus, viral protein/DNA complex; HET: DNA; NMR {Synthetic} SCOP: g.40.1.1	Back alignment and structure

>1u6p_A GAG polyprotein; MLV, A-minor K-turn, stem loop, bulge, G-U mismatch, G-A MIS U mismatch, A-C mismatch, zinc finger, NC, viral protein-RN; HET: AP7; NMR {Moloney murine leukemia virus} SCOP: g.40.1.1 PDB: 1wwd_A 1wwe_A 1wwf_A 1wwg_A	Back alignment and structure

>1dsq_A Nucleic acid binding protein P14; CCHC type zinc finger, virus/viral protein; NMR {Mouse mammary tumor virus} SCOP: g.40.1.1	Back alignment and structure

>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}	Back alignment and structure

>2ec7_A GAG polyprotein (PR55GAG); nucleocapsid protein, HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus type 2} SCOP: g.40.1.1	Back alignment and structure

>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*	Back alignment and structure

>2a51_A Nucleocapsid protein; sivlhoest, structure, NCP8, viral protein, metal binding protein; NMR {Synthetic}	Back alignment and structure

>2bl6_A Nucleocapsid protein P11; lentivirus, polyprotein, core protein, retrovirus zinc finger-like domains; NMR {Equine infectious anemia virus}	Back alignment and structure

>2a51_A Nucleocapsid protein; sivlhoest, structure, NCP8, viral protein, metal binding protein; NMR {Synthetic}	Back alignment and structure

>1a1t_A Nucleocapsid protein; stem-loop RNA, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: g.40.1.1 PDB: 1mfs_A 1f6u_A* 1aaf_A 2l4l_A 2exf_A 2jzw_A* 1bj6_A* 1esk_A 1q3y_A 1q3z_A 2e1x_A 2iwj_A	Back alignment and structure

>2ysa_A Retinoblastoma-binding protein 6; zinc finger, CCHC, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}	Back alignment and structure

>2bl6_A Nucleocapsid protein P11; lentivirus, polyprotein, core protein, retrovirus zinc finger-like domains; NMR {Equine infectious anemia virus}	Back alignment and structure

>2cqf_A RNA-binding protein LIN-28; CCHC zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}	Back alignment and structure

>2ec7_A GAG polyprotein (PR55GAG); nucleocapsid protein, HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus type 2} SCOP: g.40.1.1	Back alignment and structure

>1a1t_A Nucleocapsid protein; stem-loop RNA, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: g.40.1.1 PDB: 1mfs_A 1f6u_A* 1aaf_A 2l4l_A 2exf_A 2jzw_A* 1bj6_A* 1esk_A 1q3y_A 1q3z_A 2e1x_A 2iwj_A	Back alignment and structure

>2li8_A Protein LIN-28 homolog A; zinc finger, micro RNA, transcription-RNA complex; NMR {Homo sapiens}	Back alignment and structure

>2ihx_A Nucleocapsid (NC) protein; protein-RNA complex, viral protein/RNA complex; NMR {Rous sarcoma virus}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		751
d1nc8a_		29	HIV nucleocapsid {Human immunodeficiency virus typ	96.71
d1wj2a_		71	WRKY DNA-binding protein 4 {Thale cress (Arabidops	93.74
d2exfa1		42	HIV nucleocapsid {Human immunodeficiency virus typ	93.24
d2exfa1		42	HIV nucleocapsid {Human immunodeficiency virus typ	88.83
d1dsqa_		26	Nucleic acid binding protein p14 {Mouse mammary tu	88.07
d1a6bb_		40	Zinc finger protein ncp10 {Moloney murine leukemia	82.91

>d1nc8a_ g.40.1.1 (A:) HIV nucleocapsid {Human immunodeficiency virus type 2 [TaxId: 11709]}	Back information, alignment and structure

class: Small proteins
fold: Retrovirus zinc finger-like domains
superfamily: Retrovirus zinc finger-like domains
family: Retrovirus zinc finger-like domains
domain: HIV nucleocapsid
species: Human immunodeficiency virus type 2 [TaxId: 11709]

Probab=96.71  E-value=0.00031  Score=42.03  Aligned_cols=24  Identities=33%  Similarity=0.891  Sum_probs=21.7

Q ss_pred             CCcceeeCcccCcCCCCCCCCCCC
Q 004471          727 RVKRVVHCSRCNQTGHFRTTCAAP  750 (751)
Q Consensus       727 ~~k~~~~Cs~C~~~GHn~rtC~~~  750 (751)
                      +.+++++|=+||+.||..|.|.+|
T Consensus         2 qqr~~ikCfNCGkeGH~ar~CrAP   25 (29)
T d1nc8a_           2 QQRKVIRCWNCGKEGHSARQCRAP   25 (29)
T ss_dssp             CCCCCCBCTTTSCBSSCGGGCCSS
T ss_pred             CCcceeEeecCCccchhhhhccCc
Confidence            456789999999999999999987

PyMOL of d1nc8a_

>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}	Back information, alignment and structure

>d2exfa1 g.40.1.1 (A:12-53) HIV nucleocapsid {Human immunodeficiency virus type 1, different isolates [TaxId: 11676]}	Back information, alignment and structure

>d2exfa1 g.40.1.1 (A:12-53) HIV nucleocapsid {Human immunodeficiency virus type 1, different isolates [TaxId: 11676]}	Back information, alignment and structure

>d1dsqa_ g.40.1.1 (A:) Nucleic acid binding protein p14 {Mouse mammary tumor virus [TaxId: 11757]}	Back information, alignment and structure

>d1a6bb_ g.40.1.1 (B:) Zinc finger protein ncp10 {Moloney murine leukemia virus, MoMLV [TaxId: 11801]}	Back information, alignment and structure