Citrus Sinensis ID: 004486

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------75
MLSDADVDNKIPTQDASDSEYYILLTKDKKPICRTRCLNPPEHLPHHWNVNDIVPTSKIILDGMSHCFLSPAPECSRDHNEWRRFLIYLQGRDMVAIAKFKFWEFYILPPDQTSNFTNIRVAYKMEKTRNASNGRGHGESGRSCQVVRPTATKANINDSPTLPVNIVKETVSRGNACIQARVSDTSEDNFSPVLKFSPVVGDRLSSESTIETCSRPEPRAVKQAGPLEKNFVRADPSYLQTLGQAHSGWIFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIVSYYRKGQFMELDTVVQSEATAKYNLKSIKEFSPFNKYLIGEKAGLFQDKCTGTQIYIWNLDQWGSNYCLEWDNGLNGGSSFHQGDILIRSRRIRSRPGQISQKVPLDYSLRSYLEVIFLVPRMKIYVQGSLVRSRPLAKSLNKTCVETGIIMGKSAHLTLGRCQLEWEQMNCGIFLYWHGRLIEAYKRVGGMIHNGDTGRGVIGVIDVSDLMDEGNGLVWVHNNKQGFLDCEPYARLEEWLGKVADEYWDNKFDSLNVVKDGALYKPDQEWVQCNKCRKWRMLDPGFDTKSLPVEWFCYMKPFEGLCDLPEQKVDAGVVTVSAKRTGYDSRENSLPFEGIATIKVEDMSSDSIGLSRMAEDSSPLKRIRRGLPRACKKV
cccccccccccccccccccEEEEEEcccccccccccccccccccccccccccccccccEEEcccccEEEcccccccHHHHHHHHHHHHHHcccEEEEEEEccEEEEEcccccccccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccHHHHHHHHHHcccccccccEEEEEEEEEEccccccccEEEEEEccccccHHHHHHHHHccccccccccccccccccccccEEccccccEEEEEEEEccccEEEEEEEEcccccccEEEEEEEEEEccEEEEEEccccccHHHHcccccccccccccHHHHHHHHHHcccccccEEEEEEEcccccccccEEcccccccccccccccHHHcccccccccccccccccccccHHHHHHHHcccccEEEEEcccEEEEHHHHHHccccccccccccccEEEEEEEEEcccccccccEEEEEEEcccEEEEEEEccEEccccccccccEEEEEccccccccccEEccccccccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
ccccccccccccccccccccEEEEEEEccccEEEEEcccccccccccEEEEEEccccEEEEcccccEEcccccccccccHHHHHHHHHHHHccEEEEEEEccEEEEEcccccccccccEEEEEEEcccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccHccccccccEEEEcHHHHcccccccccHHHHHHHHHHHcccccccccEEEEEEEEEEcccccccEEEEEEEccccccHHHHHHHHHccccccccccccEEEEEccccccccccccccEEEEEcccccEEEEEEEHHHccccccEEEEEcccccccccEEEcEccccHHHHHHHHHHHHHcccccHHHHHHHHHHHccccccEEEEEEEcEEccccccEEEEcccccccccccHHHEccccccccccccHHccccccccHHHHHHHHHHccccEEEEEccEEEcHHHHHHHccccEccccccccEEEEEEEEEEccccccccEEEEEEcccEEEcEEEccccccccccccEEEEEEEEcEEEEccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccEEEHHHHccHccccccccHHHccccEEEccccccccccccccccccccEEEcccccccccccccccccccccEEEEEccccccccccccccccHHHHHHcccccccccc
mlsdadvdnkiptqdasdsEYYILLTkdkkpicrtrclnppehlphhwnvndivptskiildgmshcflspapecsrdhnEWRRFLIYLQGRDMVAIAKFKFwefyilppdqtsnfTNIRVAYKMEktrnasngrghgesgrscqvvrptatkanindsptlpvniVKETVSRGNACIQARvsdtsednfspvlkfspvvgdrlssestietcsrpepravkqagpleknfvradpsYLQTLGQAHSGWIFGAIAELvdnsrdakaTKLEISIESIYFkkagkdipmlsiiddghgmthqdVVRMtyfghkqpdaddpnrigrfgvgfktgamrLGKDALVLTQTADSRSIAFLSQSLnqgkdnleipivsyyrkgqfmeldTVVQSEATAKYNLksikefspfnkyligekaglfqdkctgtQIYIWNldqwgsnyclewdnglnggssfhqgdilirsrrirsrpgqisqkvpldyslrSYLEVIFLVPRMKIYVQGslvrsrplaksLNKTCVETGIIMGKSAHLTLGRCQLEWEQMNCGIFLYWHGRLIEAYKRVggmihngdtgrgvigvidvsdlmdegnGLVWVHnnkqgfldcepYARLEEWLGKVADeywdnkfdslnvvkdgalykpdqewvqcnkcrkwrmldpgfdtkslpvewfcymkpfeglcdlpeqkvdaGVVTVSakrtgydsrenslpfegiatikvedmssdsiglsrmaedssplkrirrglprackkv
mlsdadvdnkiptqdasdseyyILLTKDKKPICRTRCLNppehlphhwnVNDIVPTSKIILDGMSHCFLSpapecsrdHNEWRRFLIYLQGRDMVAIAKFKFWEFYILPPDQTSNFTNIRVAYKMEKtrnasngrghgesgrscQVVRPTatkanindsptlpvNIVKETVSRGNACIQArvsdtsednfspvlkfspvvgdrlssestietcsrpepravkqagplEKNFVRADPSYLQTLGQAHSGWIFGAIAELVDNSRDAKATKLEISiesiyfkkagkdIPMLSIIDDGHGMTHQDVVRMTYFGhkqpdaddpnriGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLsqslnqgkdnlEIPIVSYYRKGQFMELDTVVQSEATAKYnlksikefspFNKYLIGEKAGLFQDKCTGTQIYIWNLDQWGSNYCLEWDNGLNGGSSFHQGDILIRsrrirsrpgqisqkvpldyslRSYLEVIFLVPRMKIYVQGslvrsrplaksLNKTCVETGIIMGKSAHLTLGRCQLEWEQMNCGIFLYWHGRLIEAYKRVGGMIHNGDTGRGVIGVIDVSDLMDEGNGLVWVHNNKQGFLDCEPYARLEEWLGKVADEYWDNKFDSLNVVkdgalykpdqewvqCNKCRKWRMLDPGFDTKSLPVEWFCYMKPFEGLCDLPEQKVDAGVVTVsakrtgydsrenslpfegiatikvedmssdsiglsrmaedssplkrirrglprackkv
MLSDADVDNKIPTQDASDSEYYILLTKDKKPICRTRCLNPPEHLPHHWNVNDIVPTSKIILDGMSHCFLSPAPECSRDHNEWRRFLIYLQGRDMVAIAKFKFWEFYILPPDQTSNFTNIRVAYKMEKTRNASNGRGHGESGRSCQVVRPTATKANINDSPTLPVNIVKETVSRGNACIQARVSDTSEDNFSPVLKFSPVVGDRLSSESTIETCSRPEPRAVKQAGPLEKNFVRADPSYLQTLGQAHSGWIFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIVSYYRKGQFMELDTVVQSEATAKYNLKSIKEFSPFNKYLIGEKAGLFQDKCTGTQIYIWNLDQWGSNYCLEWDNGLNGGSSFHQGDILirsrrirsrPGQISQKVPLDYSLRSYLEVIFLVPRMKIYVQGSLVRSRPLAKSLNKTCVETGIIMGKSAHLTLGRCQLEWEQMNCGIFLYWHGRLIEAYKRVGGMIHNGDTGRGVIGVIDVSDLMDEGNGLVWVHNNKQGFLDCEPYARLEEWLGKVADEYWDNKFDSLNVVKDGALYKPDQEWVQCNKCRKWRMLDPGFDTKSLPVEWFCYMKPFEGLCDLPEQKVDAGVVTVSAKRTGYDSRENSLPFEGIATIKVEDMSSDSIGLSRMAEDSSPLKRIRRGLPRACKKV
*******************EYYILLTKDKKPICRTRCLNPPEHLPHHWNVNDIVPTSKIILDGMSHCFLSPAPECSRDHNEWRRFLIYLQGRDMVAIAKFKFWEFYILPPDQTSNFTNIRVAYK*************************************LPVNIVKETVSRGNACIQA**************************************************FVRADPSYLQTLGQAHSGWIFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHK*******NRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIVSYYRKGQFMELDTVVQSEATAKYNLKSIKEFSPFNKYLIGEKAGLFQDKCTGTQIYIWNLDQWGSNYCLEWDNGLNGGSSFHQGDILIRSRRIRS**GQISQKVPLDYSLRSYLEVIFLVPRMKIYVQGSLVRSRPLAKSLNKTCVETGIIMGKSAHLTLGRCQLEWEQMNCGIFLYWHGRLIEAYKRVGGMIHNGDTGRGVIGVIDVSDLMDEGNGLVWVHNNKQGFLDCEPYARLEEWLGKVADEYWDNKFDSLNVVKDGALYKPDQEWVQCNKCRKWRMLDPGFDTKSLPVEWFCYMKPFEGLCDLPEQKVDAGVVTVSAKR*************GIA**************************************
*****************DSEYYILLTKDKKPICRTRCLNPPEHLPHHWNVNDIVPTSKIILDGMSHCFL************WRRFLIYLQGRDMVAIAKFKFWEFYILPPDQTSNFTNIRVAYK***********************************************************************************************************VRADPSYLQTLGQAHSGWIFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYF*****************VGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIVSYYRKGQFMELDTVVQSEATAKYNLKSIKEFSPFNKYLIGEKAGLFQDKCTGTQIYIWNLDQWGSNYCLEWDNGLNGGSSFHQGDILIRSRRIRSRPGQISQKVPLDYSLRSYLEVIFLVPRMKIYVQGSLVRSRPLAKSLNKTCVETGIIMGKSAHLTLGRCQLEWEQMNCGIFLYWHGRLIEAYKRVGGMIHNGDTGRGVIGVIDVSDLMDEGNGLVWVHNNKQGFLDCEPYARLEEWLGKVADEYWDNKFDSLNVVKDGALYKPDQEWVQCNKCRKWRMLDPGFDTKSLPVEWFCYMKPFEGL*************************************************************************
********NKIPTQDASDSEYYILLTKDKKPICRTRCLNPPEHLPHHWNVNDIVPTSKIILDGMSHCFLSPAPECSRDHNEWRRFLIYLQGRDMVAIAKFKFWEFYILPPDQTSNFTNIRVAYKMEKTR***************QVVRPTATKANINDSPTLPVNIVKETVSRGNACIQARVSDTSEDNFSPVLKFSPVVG*************RPEPRAVKQAGPLEKNFVRADPSYLQTLGQAHSGWIFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIVSYYRKGQFMELDTVVQSEATAKYNLKSIKEFSPFNKYLIGEKAGLFQDKCTGTQIYIWNLDQWGSNYCLEWDNGLNGGSSFHQGDILIRSRRIRSRPGQISQKVPLDYSLRSYLEVIFLVPRMKIYVQGSLVRSRPLAKSLNKTCVETGIIMGKSAHLTLGRCQLEWEQMNCGIFLYWHGRLIEAYKRVGGMIHNGDTGRGVIGVIDVSDLMDEGNGLVWVHNNKQGFLDCEPYARLEEWLGKVADEYWDNKFDSLNVVKDGALYKPDQEWVQCNKCRKWRMLDPGFDTKSLPVEWFCYMKPFEGLCDLPEQKVDAGVVTVSAKRTGYDSRENSLPFEGIATIKVEDMSSDSIGLSRMAEDSSPLKRIRRG********
****************SDSEYYILLTKDKKPICRTRCLNPPEHLPHHWNVNDIVPTSKIILDGMSHCFLSPAPECSRDHNEWRRFLIYLQGRDMVAIAKFKFWEFYILPPDQTSNFTNIRVAYKMEKT*********************************LPVNIVKETVSRGNACI************************************RPEPRAVKQAGPLEKNFVRADPSYLQTLGQAHSGWIFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIVSYYRKGQFMELDTVVQSEATAKYNLKSIKEFSPFNKYLIGEKAGLFQDKCTGTQIYIWNLDQWGSNYCLEWDNGLNGGSSFHQGDILIRSRRIR*RPGQISQKVPLDYSLRSYLEVIFLVPRMKIYVQGSLVRSRPLAKSLNKTCVETGIIMGKSAHLTLGRCQLEWEQMNCGIFLYWHGRLIEAYKRVGGMIHNGDTGRGVIGVIDVSDLMDEGNGLVWVHNNKQGFLDCEPYARLEEWLGKVADEYWDNKFDSLNVVKDGALYKPDQEWVQCNKCRKWRMLDPGFDTKSLPVEWFCYMKPFEGLCDLPEQKVDAGVVTVSAK********NSLPFEGIATIKVEDMS******************************
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MLSDADVDNKIPTQDASDSEYYILLTKDKKPICRTRCLNPPEHLPHHWNVNDIVPTSKIILDGMSHCFLSPAPECSRDHNEWRRFLIYLQGRDMVAIAKFKFWEFYILPPDQTSNFTNIRVAYKMEKTRNASNGRGHGESGRSCQVVRPTATKANINDSPTLPVNIVKETVSRGNACIQARVSDTSEDNFSPVLKFSPVVGDRLSSESTIETCSRPEPRAVKQAGPLEKNFVRADPSYLQTLGQAHSGWIFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIVSYYRKGQFMELDTVVQSEATAKYNLKSIKEFSPFNKYLIGEKAGLFQDKCTGTQIYIWNLDQWGSNYCLEWDNGLNGGSSFHQGDILIRSRRIRSRPGQISQKVPLDYSLRSYLEVIFLVPRMKIYVQGSLVRSRPLAKSLNKTCVETGIIMGKSAHLTLGRCQLEWEQMNCGIFLYWHGRLIEAYKRVGGMIHNGDTGRGVIGVIDVSDLMDEGNGLVWVHNNKQGFLDCEPYARLEEWLGKVADEYWDNKFDSLNVVKDGALYKPDQEWVQCNKCRKWRMLDPGFDTKSLPVEWFCYMKPFEGLCDLPEQKVDAGVVTVSAKRTGYDSRENSLPFEGIATIKVEDMSSDSIGLSRMAEDSSPLKRIRRGLPRACKKV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query749 2.2.26 [Sep-21-2011]
Q14149 939 MORC family CW-type zinc yes no 0.535 0.427 0.317 5e-48
Q8BMD7 928 MORC family CW-type zinc no no 0.587 0.474 0.310 4e-45
Q8TE76 937 MORC family CW-type zinc no no 0.548 0.438 0.305 2e-41
Q8C5W4 1022 MORC family CW-type zinc no no 0.331 0.242 0.292 2e-23
Q9Y6X9 1032 MORC family CW-type zinc no no 0.333 0.242 0.297 3e-23
Q69ZX6 1030 MORC family CW-type zinc no no 0.333 0.242 0.294 7e-23
Q9WVL5 950 MORC family CW-type zinc no no 0.348 0.274 0.275 2e-22
Q86VD1 984 MORC family CW-type zinc no no 0.542 0.412 0.217 1e-20
>sp|Q14149|MORC3_HUMAN MORC family CW-type zinc finger protein 3 OS=Homo sapiens GN=MORC3 PE=1 SV=3 Back     alignment and function desciption
 Score =  193 bits (490), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 146/460 (31%), Positives = 232/460 (50%), Gaps = 59/460 (12%)

Query: 236 PSYLQTLGQAHSGWIFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGH 295
           P +L T   +H+ W F A+AEL+DN+ D      +I I+    K    D   L+  D+G+
Sbjct: 16  PKFLHTNSTSHT-WPFSAVAELIDNAYDPDVNAKQIWID----KTVINDHICLTFTDNGN 70

Query: 296 GMTHQDVVRMTYFGHKQPDADDPNR-IGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFL 354
           GMT   + +M  FG       + +  +G +G GFK+G+MRLGKDA+V T+  +S S+  L
Sbjct: 71  GMTSDKLHKMLSFGFSDKVTMNGHVPVGLYGNGFKSGSMRLGKDAIVFTKNGESMSVGLL 130

Query: 355 SQSLNQ--GKDNLEIPIVSYYRKGQFMELDTVVQSEATAKYNLKSIKEFSPFN--KYLIG 410
           SQ+  +    +++ +PIV++ +  Q + L       A +K +L +I E S F+  + L+ 
Sbjct: 131 SQTYLEVIKAEHVVVPIVAFNKHRQMINL-------AESKASLAAILEHSLFSTEQKLLA 183

Query: 411 EKAGLFQDKCTGTQIYIWNLDQWGSNYCLEWDNGLNGGSSFHQGDI-LIRSRRIRSRPGQ 469
           E   +   K  GT+I IWNL  + +    E+D   +        D+  I  ++   +  +
Sbjct: 184 ELDAIIGKK--GTRIIIWNLRSYKN--ATEFDFEKDKYDIRIPEDLDEITGKKGYKKQER 239

Query: 470 ISQKVP-LDYSLRSYLEVIFLVPRMKIYVQGSLVRSRPLAKSLNKTCVETGI----IMGK 524
           + Q  P  DYSLR+Y  +++L PRM+I ++G  V+++ ++KSL    +E  +     + K
Sbjct: 240 MDQIAPESDYSLRAYCSILYLKPRMQIILRGQKVKTQLVSKSL--AYIERDVYRPKFLSK 297

Query: 525 SAHLTLGRCQLEWEQMNC------GIFLYWHGRLIEAYKRVGGMIHNGDTGRGVIGVIDV 578
           +  +T G         NC      GI +Y   RLI+AY++VG  +   + G GV+G+I  
Sbjct: 298 TVRITFG--------FNCRNKDHYGIMMYHRNRLIKAYEKVGCQLRANNMGVGVVGII-- 347

Query: 579 SDLMDEGNGLVWVHNNKQGFLDCEPYARLEEWLGKVADEYWD------NKFDSLNVVKDG 632
                E N L   H NKQ F     Y      LG+  ++YW+      N    LN+  + 
Sbjct: 348 -----ECNFLKPTH-NKQDFDYTNEYRLTITALGEKLNDYWNEMKVKKNTEYPLNLPVED 401

Query: 633 ALYKPDQEWVQCNKCRKWRMLDPGFDTKSLPVEWFCYMKP 672
              +PDQ WVQC+ C KWR L  G D   LP +W+C   P
Sbjct: 402 IQKRPDQTWVQCDACLKWRKLPDGMD--QLPEKWYCSNNP 439

Homo sapiens (taxid: 9606)
>sp|Q8BMD7|MORC4_MOUSE MORC family CW-type zinc finger protein 4 OS=Mus musculus GN=Morc4 PE=2 SV=2 Back     alignment and function description
>sp|Q8TE76|MORC4_HUMAN MORC family CW-type zinc finger protein 4 OS=Homo sapiens GN=MORC4 PE=1 SV=2 Back     alignment and function description
>sp|Q8C5W4|MOR2B_MOUSE MORC family CW-type zinc finger protein 2B OS=Mus musculus GN=Morc2b PE=2 SV=2 Back     alignment and function description
>sp|Q9Y6X9|MORC2_HUMAN MORC family CW-type zinc finger protein 2 OS=Homo sapiens GN=MORC2 PE=1 SV=2 Back     alignment and function description
>sp|Q69ZX6|MOR2A_MOUSE MORC family CW-type zinc finger protein 2A OS=Mus musculus GN=Morc2a PE=1 SV=2 Back     alignment and function description
>sp|Q9WVL5|MORC1_MOUSE MORC family CW-type zinc finger protein 1 OS=Mus musculus GN=Morc1 PE=2 SV=1 Back     alignment and function description
>sp|Q86VD1|MORC1_HUMAN MORC family CW-type zinc finger protein 1 OS=Homo sapiens GN=MORC1 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query749
255583448754 zinc finger protein, putative [Ricinus c 0.959 0.953 0.666 0.0
359476999760 PREDICTED: MORC family CW-type zinc fing 0.965 0.951 0.626 0.0
296088514596 unnamed protein product [Vitis vinifera] 0.751 0.944 0.697 0.0
356495297692 PREDICTED: MORC family CW-type zinc fing 0.775 0.839 0.622 0.0
115468994792 Os06g0622000 [Oryza sativa Japonica Grou 0.955 0.904 0.5 0.0
222635901800 hypothetical protein OsJ_22008 [Oryza sa 0.955 0.895 0.5 0.0
357484261577 MORC family CW-type zinc finger protein 0.739 0.960 0.634 0.0
218198566766 hypothetical protein OsI_23737 [Oryza sa 0.910 0.890 0.464 0.0
242096394758 hypothetical protein SORBIDRAFT_10g02439 0.902 0.891 0.443 1e-178
413954785785 hypothetical protein ZEAMMB73_569962 [Ze 0.881 0.840 0.470 1e-176
>gi|255583448|ref|XP_002532483.1| zinc finger protein, putative [Ricinus communis] gi|223527808|gb|EEF29907.1| zinc finger protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  984 bits (2544), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 491/737 (66%), Positives = 573/737 (77%), Gaps = 18/737 (2%)

Query: 18  DSEYYILLTKDKKPICRTRCLNPPEHLPHHWNVNDIVPTSKI-ILDGMSHCFLSPAPECS 76
           D + Y+ L KD KPICRT+CLNPP  +P  WN++DI+P SK+ I DG+ HCFL PA E +
Sbjct: 31  DCKLYVFLMKDGKPICRTQCLNPPAEVPQSWNIHDIIPRSKMNIYDGLPHCFLRPAAENN 90

Query: 77  RDHNEWRRFLIYLQGRDMVAIAKFKFWEFYILPPDQTSNFTNIRVAYKMEKTRNASNGRG 136
           RD NEW+RFL YLQ R+ V IAKF+F  FYILPP +  NF++++VAY+ EKT N  + + 
Sbjct: 91  RDQNEWQRFLSYLQKRNSVGIAKFEFCNFYILPPAEAYNFSHVKVAYR-EKTSNKYSHQK 149

Query: 137 HGES----GRSCQVVRPTATKANINDSPTLPVNIVKETVSRGNACIQARVSDTSEDNFSP 192
           H ES      +CQ V        +    T+P    +   +R N  ++A      EDN + 
Sbjct: 150 HCESVVDTTEACQFV--GCNLDPVETCGTVPSQSAERFTARKNVHMKASDQGIIEDNETS 207

Query: 193 VLKFSPVVGDRLSSESTIETCSRPEPRAVKQAGPLEKNFVRADPSYLQTLGQAHSGWIFG 252
            +KFS  +GD L  E TI    R + RAVKQ GPL +N+VRADPSYLQTLGQAHSGWIFG
Sbjct: 208 YVKFSQSIGDPLGHEPTI----RHQRRAVKQDGPLMENYVRADPSYLQTLGQAHSGWIFG 263

Query: 253 AIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQ 312
           AIAELVDNSRDAKA++L+I IE+IY K+AGKDIPMLSIIDDGHGMTHQ+V+RMT FGHKQ
Sbjct: 264 AIAELVDNSRDAKASRLDILIETIYSKRAGKDIPMLSIIDDGHGMTHQEVMRMTCFGHKQ 323

Query: 313 PDADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPIVSY 372
           PD DD +RIGRFGVGFKTGAMRLG+DALVLTQT+ SRSIAFLSQSLN+G DNLEIPIVSY
Sbjct: 324 PDVDDLDRIGRFGVGFKTGAMRLGRDALVLTQTSCSRSIAFLSQSLNEGNDNLEIPIVSY 383

Query: 373 YRKGQFMELDTVVQSEATAKYNLKSIKEFSPFNKYLIGEKAGLFQDKCTGTQIYIWNLDQ 432
            RKGQFME+DT VQSEA AK NLK+IKE S F+KYLIGEKAGLF  K TGTQIYIWNLD+
Sbjct: 384 RRKGQFMEVDTNVQSEALAKNNLKAIKELSHFDKYLIGEKAGLFHGKHTGTQIYIWNLDE 443

Query: 433 WGSNYCLEWDNGLNGGSSFHQGDILIRSRRIRSRPGQISQKVPLDYSLRSYLEVIFLVPR 492
           WGS YCL+W  GLNG SSFHQGDILIRS+R+RSRPGQ++QKVPLDYSLRSYLEVIFLVPR
Sbjct: 444 WGSGYCLDWTTGLNGWSSFHQGDILIRSKRVRSRPGQMTQKVPLDYSLRSYLEVIFLVPR 503

Query: 493 MKIYVQGSLVRSRPLAKSLNKTCVETGIIMGKSAHLTLGRCQLEWEQMNCGIFLYWHGRL 552
           M+IYVQGSLV+SRPLAKSL+ TC  T  I+GK  HLTLGRCQLEWEQ N GIFLYWHGRL
Sbjct: 504 MRIYVQGSLVKSRPLAKSLSMTCEATDNILGKRVHLTLGRCQLEWEQGNSGIFLYWHGRL 563

Query: 553 IEAYKRVGGMIHNGDTGRGVIGVIDVSDLMDEGNGLVWVHNNKQGFLDCEPYARLEEWLG 612
           IEAYKRVGGM H G  G GVIGVIDV+DLMD GNG VWVH+NKQGF DCEPY RLE WLG
Sbjct: 564 IEAYKRVGGMAH-GKVGLGVIGVIDVTDLMDNGNGRVWVHSNKQGFQDCEPYVRLENWLG 622

Query: 613 KVADEYWDNKFDSLNVVKDGALYKPDQEWVQCNKCRKWRMLDPGFDTKSLPVEWFCYMKP 672
           K  DEYWDN FD++ + K G LYKPDQEWVQC++CRKWR+L  G+D K+L +EWFCYM+P
Sbjct: 623 KKVDEYWDNNFDTVPLKKGGVLYKPDQEWVQCDRCRKWRILCAGYDRKNLLLEWFCYMEP 682

Query: 673 FEGLCDLPEQKVDAGVVTVSAKRTGYDSRENSLPFEGIATIKVEDMSSDSIGLSRMAEDS 732
           F+G C+ PEQK   GV+TVS +R+GYD RE++   E  A I  E  S + +  ++     
Sbjct: 683 FQGSCETPEQKAKHGVITVSTRRSGYD-REDA---EDDAIITSEGNSDEDVDQTKKVGKQ 738

Query: 733 SPLKRIRRGLPRACKKV 749
              KRIR+GLPRACKKV
Sbjct: 739 G-FKRIRKGLPRACKKV 754

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359476999|ref|XP_002263942.2| PREDICTED: MORC family CW-type zinc finger protein 2B-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|296088514|emb|CBI37505.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356495297|ref|XP_003516515.1| PREDICTED: MORC family CW-type zinc finger protein 3-like [Glycine max] Back     alignment and taxonomy information
>gi|115468994|ref|NP_001058096.1| Os06g0622000 [Oryza sativa Japonica Group] gi|51090841|dbj|BAD35369.1| Zinc finger CW-type coiled-coil domain protein 3-like [Oryza sativa Japonica Group] gi|113596136|dbj|BAF20010.1| Os06g0622000 [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|222635901|gb|EEE66033.1| hypothetical protein OsJ_22008 [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|357484261|ref|XP_003612418.1| MORC family CW-type zinc finger protein [Medicago truncatula] gi|355513753|gb|AES95376.1| MORC family CW-type zinc finger protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|218198566|gb|EEC80993.1| hypothetical protein OsI_23737 [Oryza sativa Indica Group] Back     alignment and taxonomy information
>gi|242096394|ref|XP_002438687.1| hypothetical protein SORBIDRAFT_10g024390 [Sorghum bicolor] gi|241916910|gb|EER90054.1| hypothetical protein SORBIDRAFT_10g024390 [Sorghum bicolor] Back     alignment and taxonomy information
>gi|413954785|gb|AFW87434.1| hypothetical protein ZEAMMB73_569962 [Zea mays] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query749
UNIPROTKB|F1MFY1 960 MORC3 "Uncharacterized protein 0.584 0.456 0.326 1e-48
ZFIN|ZDB-GENE-030131-1502 1079 morc3a "MORC family CW-type zi 0.650 0.451 0.301 1.5e-48
UNIPROTKB|F1PFJ7 939 MORC3 "Uncharacterized protein 0.579 0.462 0.323 4.4e-47
UNIPROTKB|F1SGX2 940 MORC3 "Uncharacterized protein 0.582 0.463 0.315 5.5e-46
UNIPROTKB|Q14149 939 MORC3 "MORC family CW-type zin 0.574 0.457 0.313 4.8e-45
UNIPROTKB|F1P2D9 926 MORC3 "Uncharacterized protein 0.642 0.519 0.293 4.3e-43
ZFIN|ZDB-GENE-040801-98 763 morc3b "MORC family CW-type zi 0.564 0.554 0.323 1.7e-41
UNIPROTKB|Q8TE76 937 MORC4 "MORC family CW-type zin 0.584 0.467 0.301 9.1e-39
UNIPROTKB|F1P705 898 MORC4 "Uncharacterized protein 0.567 0.473 0.298 2.9e-38
MGI|MGI:1922996 928 Morc4 "microrchidia 4" [Mus mu 0.546 0.440 0.304 7e-35
UNIPROTKB|F1MFY1 MORC3 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
 Score = 529 (191.3 bits), Expect = 1.0e-48, P = 1.0e-48
 Identities = 159/487 (32%), Positives = 248/487 (50%)

Query:   236 PSYLQTLGQAHSGWIFGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGH 295
             P +L T   +H+ W F A+AEL+DN+ D      +I I+    K    D   L+  D+G+
Sbjct:    26 PKFLHTNSTSHT-WPFSAVAELIDNAYDPDVNAKQIWID----KTVINDCICLTFTDNGN 80

Query:   296 GMTHQDVVRMTYFGHKQP-DADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFL 354
             GMT   + +M  FG  +    +D   +G +G GFK+G+MRLGKDA+V T+  +S S+ FL
Sbjct:    81 GMTSDKLHKMLSFGFSEKVTMNDHVPVGLYGNGFKSGSMRLGKDAMVFTKNEESMSVGFL 140

Query:   355 SQS-LNQGK-DNLEIPIVSYYRKGQFMELDTVVQSEATAKYNLKSIKEFSPFNK--YLIG 410
             SQ+ L   K +++ +PIVS+ ++     LD+  +S+A+    L +I E S F+K   L+ 
Sbjct:   141 SQTYLEVIKAEHVVVPIVSFNKQDIRQVLDST-ESKAS----LAAILEHSLFSKEQQLLA 195

Query:   411 EKAGLFQDKCTGTQIYIWNLDQWGSNYCLEWDNGLNGGSSFHQGDILXXXXXXXXXPGQ- 469
             E   +   K  GT+I IWNL  + S    E+D   +        D+            + 
Sbjct:   196 ELDAIIGKK--GTRIIIWNLRSYKS--ATEFDFDKDKYDIRIPEDLDETAGKKGYKKQER 251

Query:   470 ISQKVP-LDYSLRSYLEVIFLVPRMKIYVQGSLVRSRPLAKSL---NKTCVETGIIMGKS 525
             + Q  P  DYSLR+Y  +++L PRM+I ++G  V+++ ++KSL    +       +  K+
Sbjct:   252 MDQIAPESDYSLRAYCSILYLKPRMQIILRGQKVKTQLVSKSLAYIERDIYRPKFLTNKT 311

Query:   526 AHLTLG-RCQLEWEQMNCGIFLYWHGRLIEAYKRVGGMIHNGDTGRGVIGVIDVSDLMDE 584
               +T G  C+    + + GI +Y   RLI+AY++VG  +   + G GV+G+ID   L   
Sbjct:   312 VRITFGFNCR---NKDHYGIMMYHRNRLIKAYEKVGCQLRANNMGVGVVGIIDCYFLKP- 367

Query:   585 GNGLVWVHNNKQGFLDCEPYARLEEWLGKVADEYWDN-KFDS-----LNVVKDGALYKPD 638
                    HN KQ F     Y      LG   ++YW+  K        LN+  +    +PD
Sbjct:   368 ------THN-KQDFDYTNEYRLTITALGDKLNDYWNEMKVKKHAEYPLNLPVEDIQKRPD 420

Query:   639 QEWVQCNKCRKWRMLDPGFDTKSLPVEWFCYMKP---FEGLCDLPEQKVDAGVVTVSAKR 695
             Q WVQC+ C KWR L  G D   LP +W+C   P   F   CD+PE+  D  VV  + ++
Sbjct:   421 QTWVQCDSCLKWRKLPDGID--QLPEKWYCSNNPDPQFRN-CDVPEEPEDEDVVHPTYEK 477

Query:   696 TGYDSRE 702
             T Y  ++
Sbjct:   478 T-YKKKD 483
GO:0051457 "maintenance of protein location in nucleus" evidence=IEA
GO:0050821 "protein stabilization" evidence=IEA
GO:0048147 "negative regulation of fibroblast proliferation" evidence=IEA
GO:0045111 "intermediate filament cytoskeleton" evidence=IEA
GO:0018105 "peptidyl-serine phosphorylation" evidence=IEA
GO:0016605 "PML body" evidence=IEA
GO:0016235 "aggresome" evidence=IEA
GO:0009791 "post-embryonic development" evidence=IEA
GO:0007569 "cell aging" evidence=IEA
GO:0008270 "zinc ion binding" evidence=IEA
GO:0005524 "ATP binding" evidence=IEA
ZFIN|ZDB-GENE-030131-1502 morc3a "MORC family CW-type zinc finger 3a" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1PFJ7 MORC3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1SGX2 MORC3 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q14149 MORC3 "MORC family CW-type zinc finger protein 3" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1P2D9 MORC3 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040801-98 morc3b "MORC family CW-type zinc finger 3b" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q8TE76 MORC4 "MORC family CW-type zinc finger protein 4" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1P705 MORC4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
MGI|MGI:1922996 Morc4 "microrchidia 4" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00006004001
SubName- Full=Chromosome chr4 scaffold_162, whole genome shotgun sequence; (596 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query749
pfam13589134 pfam13589, HATPase_c_3, Histidine kinase-, DNA gyr 5e-22
pfam0749650 pfam07496, zf-CW, CW-type Zinc Finger 3e-11
COG0323 638 COG0323, MutL, DNA mismatch repair enzyme (predict 8e-07
TIGR00585312 TIGR00585, mutl, DNA mismatch repair protein MutL 2e-06
PRK00095 617 PRK00095, mutL, DNA mismatch repair protein; Revie 3e-06
pfam02518111 pfam02518, HATPase_c, Histidine kinase-, DNA gyras 2e-04
cd00075103 cd00075, HATPase_c, Histidine kinase-like ATPases; 3e-04
PRK05218613 PRK05218, PRK05218, heat shock protein 90; Provisi 6e-04
COG0326623 COG0326, HtpG, Molecular chaperone, HSP90 family [ 0.002
>gnl|CDD|222246 pfam13589, HATPase_c_3, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Back     alignment and domain information 
 Score = 92.0 bits (229), Expect = 5e-22
 Identities = 33/121 (27%), Positives = 59/121 (48%), Gaps = 7/121 (5%)

Query: 251 FGAIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGH 310
             AIAEL+DNS DA AT ++ISI+        +    +SI D+G GM+++++      G 
Sbjct: 4   EDAIAELIDNSIDADATNVKISIDPD------RGEDGISIEDNGGGMSYEELRNALKLGR 57

Query: 311 KQPDADDPNR-IGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKDNLEIPI 369
              + +  +  +GR G+G K  ++ LG+   V ++     S   L       +   ++P 
Sbjct: 58  SSKEGERDSTTLGRKGIGMKLASLSLGRKLTVTSKKEGESSTLTLDLDDIDKEGEWDLPE 117

Query: 370 V 370
           +
Sbjct: 118 L 118

This family represents, additionally, the structurally related ATPase domains of histidine kinase, DNA gyrase B and HSP90. Length = 134
>gnl|CDD|219431 pfam07496, zf-CW, CW-type Zinc Finger Back     alignment and domain information
>gnl|CDD|223400 COG0323, MutL, DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|233035 TIGR00585, mutl, DNA mismatch repair protein MutL Back     alignment and domain information
>gnl|CDD|234630 PRK00095, mutL, DNA mismatch repair protein; Reviewed Back     alignment and domain information
>gnl|CDD|217081 pfam02518, HATPase_c, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Back     alignment and domain information
>gnl|CDD|238030 cd00075, HATPase_c, Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins Back     alignment and domain information
>gnl|CDD|235366 PRK05218, PRK05218, heat shock protein 90; Provisional Back     alignment and domain information
>gnl|CDD|223403 COG0326, HtpG, Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 749
KOG1845 775 consensus MORC family ATPases [Cell cycle control, 99.95
COG0326623 HtpG Molecular chaperone, HSP90 family [Posttransl 99.9
PTZ00130 814 heat shock protein 90; Provisional 99.9
PRK05218 613 heat shock protein 90; Provisional 99.88
PRK14083 601 HSP90 family protein; Provisional 99.87
PTZ00272 701 heat shock protein 83 kDa (Hsp83); Provisional 99.86
KOG1845 775 consensus MORC family ATPases [Cell cycle control, 99.83
KOG0019656 consensus Molecular chaperone (HSP90 family) [Post 99.76
KOG0020 785 consensus Endoplasmic reticulum glucose-regulated 99.76
PF13589137 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and 99.67
PF0749650 zf-CW: CW-type Zinc Finger; InterPro: IPR011124 Zi 99.59
PRK00095617 mutL DNA mismatch repair protein; Reviewed 99.44
TIGR00585312 mutl DNA mismatch repair protein MutL. All protein 99.31
COG0323 638 MutL DNA mismatch repair enzyme (predicted ATPase) 99.31
COG1389538 DNA topoisomerase VI, subunit B [DNA replication, 99.08
KOG1979 694 consensus DNA mismatch repair protein - MLH1 famil 98.91
KOG1978 672 consensus DNA mismatch repair protein - MLH2/PMS1/ 98.87
PRK04184535 DNA topoisomerase VI subunit B; Validated 98.7
PRK14868 795 DNA topoisomerase VI subunit B; Provisional 98.62
TIGR01052488 top6b DNA topoisomerase VI, B subunit. This model 98.6
PRK05559631 DNA topoisomerase IV subunit B; Reviewed 98.44
TIGR01055625 parE_Gneg DNA topoisomerase IV, B subunit, proteob 98.36
PRK05644638 gyrB DNA gyrase subunit B; Validated 98.23
PRK14939 756 gyrB DNA gyrase subunit B; Provisional 98.2
smart00433594 TOP2c TopoisomeraseII. Eukaryotic DNA topoisomeras 98.19
PRK14867 659 DNA topoisomerase VI subunit B; Provisional 98.17
TIGR01059 654 gyrB DNA gyrase, B subunit. This model describes t 98.17
PF02518111 HATPase_c: Histidine kinase-, DNA gyrase B-, and H 98.14
KOG1977 1142 consensus DNA mismatch repair protein - MLH3 famil 97.96
TIGR01058637 parE_Gpos DNA topoisomerase IV, B subunit, Gram-po 97.45
COG3290537 CitA Signal transduction histidine kinase regulati 97.26
PLN03237 1465 DNA topoisomerase 2; Provisional 97.23
COG0187635 GyrB Type IIA topoisomerase (DNA gyrase/topo II, t 97.23
smart00387111 HATPase_c Histidine kinase-like ATPases. Histidine 97.19
cd00075103 HATPase_c Histidine kinase-like ATPases; This fami 97.14
PRK10604433 sensor protein RstB; Provisional 97.02
PRK09470461 cpxA two-component sensor protein; Provisional 96.94
PRK10364457 sensor protein ZraS; Provisional 96.84
PHA02569602 39 DNA topoisomerase II large subunit; Provisional 96.79
PRK09467435 envZ osmolarity sensor protein; Provisional 96.79
COG0642336 BaeS Signal transduction histidine kinase [Signal 96.7
PRK10755356 sensor protein BasS/PmrB; Provisional 96.6
TIGR02938494 nifL_nitrog nitrogen fixation negative regulator N 96.59
TIGR01386457 cztS_silS_copS heavy metal sensor kinase. Members 96.55
PRK11086542 sensory histidine kinase DcuS; Provisional 96.52
TIGR02966333 phoR_proteo phosphate regulon sensor kinase PhoR. 96.5
PRK09303380 adaptive-response sensory kinase; Validated 96.47
PRK11006430 phoR phosphate regulon sensor protein; Provisional 96.41
PTZ00109 903 DNA gyrase subunit b; Provisional 96.41
PRK10549466 signal transduction histidine-protein kinase BaeS; 96.23
PRK15053545 dpiB sensor histidine kinase DpiB; Provisional 96.22
PLN03128 1135 DNA topoisomerase 2; Provisional 96.15
PRK11100475 sensory histidine kinase CreC; Provisional 96.12
PTZ00108 1388 DNA topoisomerase 2-like protein; Provisional 96.07
TIGR02916679 PEP_his_kin putative PEP-CTERM system histidine ki 96.03
PRK10815485 sensor protein PhoQ; Provisional 95.88
PRK11360607 sensory histidine kinase AtoS; Provisional 95.87
COG4191603 Signal transduction histidine kinase regulating C4 95.72
PRK10337449 sensor protein QseC; Provisional 95.51
PRK15347921 two component system sensor kinase SsrA; Provision 95.45
TIGR01925137 spIIAB anti-sigma F factor. This model describes t 95.23
PRK11091779 aerobic respiration control sensor protein ArcB; P 95.23
TIGR03785703 marine_sort_HK proteobacterial dedicated sortase s 95.21
PRK09835482 sensor kinase CusS; Provisional 95.07
PRK11073348 glnL nitrogen regulation protein NR(II); Provision 95.01
PRK13837828 two-component VirA-like sensor kinase; Provisional 94.97
PRK11466914 hybrid sensory histidine kinase TorS; Provisional 94.52
TIGR02956968 TMAO_torS TMAO reductase sytem sensor TorS. This p 94.4
PRK10490895 sensor protein KdpD; Provisional 94.22
PRK10841924 hybrid sensory kinase in two-component regulatory 93.85
PF13581125 HATPase_c_2: Histidine kinase-like ATPase domain 93.85
PRK10547670 chemotaxis protein CheA; Provisional 93.7
PRK11107919 hybrid sensory histidine kinase BarA; Provisional 93.57
KOG0787414 consensus Dehydrogenase kinase [Signal transductio 93.38
PRK04069161 serine-protein kinase RsbW; Provisional 93.38
COG3850574 NarQ Signal transduction histidine kinase, nitrate 93.34
PRK03660146 anti-sigma F factor; Provisional 93.28
TIGR01924159 rsbW_low_gc serine-protein kinase RsbW. This model 93.1
PRK13557540 histidine kinase; Provisional 92.7
PRK10618894 phosphotransfer intermediate protein in two-compon 92.46
PRK099591197 hybrid sensory histidine kinase in two-component r 91.78
COG4585365 Signal transduction histidine kinase [Signal trans 91.68
PRK11644495 sensory histidine kinase UhpB; Provisional 90.71
PRK10600569 nitrate/nitrite sensor protein NarX; Provisional 90.09
PF07744119 SPOC: SPOC domain; InterPro: IPR012921 Spen (split 89.55
COG2205890 KdpD Osmosensitive K+ channel histidine kinase [Si 89.46
COG3920221 Signal transduction histidine kinase [Signal trans 89.3
COG0643716 CheA Chemotaxis protein histidine kinase and relat 88.37
COG2172146 RsbW Anti-sigma regulatory factor (Ser/Thr protein 87.9
COG5002459 VicK Signal transduction histidine kinase [Signal 87.66
PRK13560807 hypothetical protein; Provisional 87.45
COG2972456 Predicted signal transduction protein with a C-ter 86.69
COG5000712 NtrY Signal transduction histidine kinase involved 86.12
COG4192673 Signal transduction histidine kinase regulating ph 85.97
smart0024947 PHD PHD zinc finger. The plant homeodomain (PHD) f 80.34
>KOG1845 consensus MORC family ATPases [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information 
Probab=99.95  E-value=8e-28  Score=278.32  Aligned_cols=422  Identities=21%  Similarity=0.232  Sum_probs=292.4

Q ss_pred             CCceeeecCCCCceeeecCHHHHHHhhccccCCHHHHHHHHHhccccc---CCCccEEEEEecccccCCCCccEEEEE--
Q 004486          217 EPRAVKQAGPLEKNFVRADPSYLQTLGQAHSGWIFGAIAELVDNSRDA---KATKLEISIESIYFKKAGKDIPMLSII--  291 (749)
Q Consensus       217 ~~~~~~~~~~~~~~~~~v~p~~L~slst~h~~~pf~AIaELIdNS~DA---~At~V~I~I~~~~~~~~~~~~~~L~I~--  291 (749)
                      .+.-+...+.++-.+++++|+|||+++|+| .|.++|++||+|||+|.   +|+.+.|.  .+ ++.-+.....++|.  
T Consensus       115 a~~~~~~~~~G~~~~iivhpkflhsnatsh-k~a~~a~aeLldnalDEi~~~~tf~~vd--~I-~p~~d~~i~a~~v~~~  190 (775)
T KOG1845|consen  115 AELDVIIGKSGGTLHIIVHPKFLHSNATSH-KWAKGAIAELLDNALDEITNGATFVRVD--YI-NPVMDIFIRALVVQLK  190 (775)
T ss_pred             ccccceeccCCceeEEEEehhhhcCCCccc-ccccChhhhhccccccccccccceEEee--ee-cccccccceeEEeecc
Confidence            344445666666799999999999999999 89999999999999997   46664443  21 11112223445555  


Q ss_pred             ---eCCCCCCHHhHHhhhhcccCCCCCCCCcccccccceeeeecccccCeEEEEEeeC------CCCceeEEEEEec--C
Q 004486          292 ---DDGHGMTHQDVVRMTYFGHKQPDADDPNRIGRFGVGFKTGAMRLGKDALVLTQTA------DSRSIAFLSQSLN--Q  360 (749)
Q Consensus       292 ---DNG~GMt~eeL~~~l~fG~S~k~~~d~~~IGqfGvGfKsAsmrlg~~v~V~Sk~~------g~~svg~ls~sf~--~  360 (749)
                         |||+||.++-+..+|.+|++.+. +-...+||||+||+++.|++|.+++|++|..      ..+++|+++++|.  +
T Consensus       191 ~~s~~gg~~~~~~i~~~m~l~~~~k~-e~~~tv~q~~~gfktst~rlGa~~i~~~R~~~~~~~kstqsiglls~tfL~~t  269 (775)
T KOG1845|consen  191 RISDDGGGMKPEVIRKCMSLGYSSKK-EANSTVGQYGNGFKTSTMRLGADAIVFSRCESRRGLKSTQSIGLLSYTFLRKT  269 (775)
T ss_pred             ceeccccccCHHHHHHHHHhhhhhhh-hhhhhhhhhccccccchhhhccceeEeehhhhhccCCcceeEEEEEEeeeccc
Confidence               78999999999999999998875 3468999999999999999999999999943      2568999999994  6


Q ss_pred             CCeeEEEec----cccCCCCc-EEEEEecccccchhhhhHH-----hHhhhCCCchh--hHHHh-hh------c----cc
Q 004486          361 GKDNLEIPI----VSYYRKGQ-FMELDTVVQSEATAKYNLK-----SIKEFSPFNKY--LIGEK-AG------L----FQ  417 (749)
Q Consensus       361 g~~~i~VPi----~~~~~~Gt-~I~l~l~~~~e~~~~~~L~-----~I~kySpF~s~--pI~e~-~~------~----~~  417 (749)
                      +.++++||+    ...+.... +..+..+..  ..|..++.     .+++|+||.+.  .+.+. ..      .    +.
T Consensus       270 ~~~d~iv~~~~i~~~~e~~~~~~~~i~~~s~--~~~~~n~~i~~~~~~L~w~p~~~~~~~l~q~~v~~~~~~~ef~~~~~  347 (775)
T KOG1845|consen  270 GKRDFIVPMRLIKMDYEKSDQLWQGILYKSG--VDWAVNLEIEVTERFLKWSPYSHLLDLLGQNSVQYSKDFPEFGHQFN  347 (775)
T ss_pred             cCCceeEecchhhhhhhcccccccceeeccc--cccceeeeeHHHHHHhhcCccccHHHHhhhhhhhhccccchhcchhh
Confidence            788999999    44443111 111112211  22333443     39999999984  22220 00      1    11


Q ss_pred             -cCCCCcEEEEEcccCCC---CceeeeccCCCCCCCCCCcCcceeecccccCCCCcccccCcchhhHHHHHhhhhcC--C
Q 004486          418 -DKCTGTQIYIWNLDQWG---SNYCLEWDNGLNGGSSFHQGDILIRSRRIRSRPGQISQKVPLDYSLRSYLEVIFLV--P  491 (749)
Q Consensus       418 -~~~~GT~IiI~NLrr~~---~~~eLdF~td~~~~~~~~~~DI~i~~~~~~~~~~q~~~~~~~~ySLRaYLSiLYL~--P  491 (749)
                       ...+||.+|+||+++|.   +-.++||+.+        +++|.                ....++++.|.++||+.  +
T Consensus       348 ~~~~~g~~~I~Y~~~~~~~~~g~~e~df~l~--------~~~i~----------------~~~~~~~~s~~sil~~~~~~  403 (775)
T KOG1845|consen  348 IMNKPGTDVIIYNLRRWKGDEGILELDFDLD--------PHVIP----------------WTYCHSHLSEASILLLTRRL  403 (775)
T ss_pred             hccCCCceeeeechhhhcccccceeeccccC--------ccccc----------------ccchhhhhhcccccchhccc
Confidence             25799999999997663   3478888765        34542                13456889999999974  8


Q ss_pred             CeEEEEcCeeecccccccccCceeee--cccccc-------eEEEEEEccccccc-ccccceEEEEEcCeeee----eee
Q 004486          492 RMKIYVQGSLVRSRPLAKSLNKTCVE--TGIIMG-------KSAHLTLGRCQLEW-EQMNCGIFLYWHGRLIE----AYK  557 (749)
Q Consensus       492 rm~I~LnGkkV~~~~i~~~L~~~~v~--~~~~~~-------~~V~It~Gf~k~e~-~~~~~Gi~VY~nnRLI~----~~~  557 (749)
                      +|.+.+.|+.+.++.+......+...  .+....       .......|+.+... ....+|+.|||.+|||.    ++|
T Consensus       404 ~~~~v~~~~~~~h~sv~~~q~~~~~~~~~p~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nV~~~~~lie~~~~~~~  483 (775)
T KOG1845|consen  404 RFKSVLRGKDVEHHSVINYQVQTEEILYQPQRAPADGKQRLIKLSPKPGFVKDAPRPIDVQQFNVSHGPRLIEHGCRPFV  483 (775)
T ss_pred             cchhccccccchhhhHHHHHHHHHHHhcccccccCCccchhhcccCCCCcccccCCCCCccCCccccCCcchhhccccee
Confidence            99999999999999988766554321  111100       11122445555432 23456999999999999    999


Q ss_pred             eccccccCCCCCceEEEEEecCcccccCCCccccccCccCccCchHHHHHHHHHHHHHHHHHhhcccccccccc---cCC
Q 004486          558 RVGGMIHNGDTGRGVIGVIDVSDLMDEGNGLVWVHNNKQGFLDCEPYARLEEWLGKVADEYWDNKFDSLNVVKD---GAL  634 (749)
Q Consensus       558 kVg~q~~~~~~GrGVIGVve~~~l~~p~~~~~~pthnKQdFe~t~~y~~L~~~L~e~l~eYW~~~~~~~~~~~~---~~~  634 (749)
                      |.++.  ..+.++++++++..++ .       +++|++|+|+++-.-.+++.+..++++.||...++.+.+...   ..+
T Consensus       484 k~~n~--~~s~~~~~~~il~~n~-~-------~~a~~~~~v~~~~v~a~~es~~~~~~~~~~~~~~~~i~~~~~q~~~~~  553 (775)
T KOG1845|consen  484 KIDNA--TGSLGQAVIPILVGNF-V-------ETAPDSQGVEKTIVLASSESRDKQSLNTYEEKKCLRIDEAGRQLQKER  553 (775)
T ss_pred             eecCC--Cccccccccceecccc-c-------ccCCCccccccccccccchhhhhhcccccccccccccCccchhhhhhh
Confidence            99985  5579999999999973 3       469999999999989999999999999999999998876521   111


Q ss_pred             CC-----CCCceeeCccchhhccCCCCCCCCCCCCCceecCCC---CCCCCCCCcccccCC
Q 004486          635 YK-----PDQEWVQCNKCRKWRMLDPGFDTKSLPVEWFCYMKP---FEGLCDLPEQKVDAG  687 (749)
Q Consensus       635 ~~-----~~~~WvQCd~C~KWR~Lp~~~~~~~lp~~W~C~~np---~~~sC~~pEe~~~~~  687 (749)
                      +.     ....=-||-   +=  ++.   ...--..|+|..++   .++.|+-+-...+.+
T Consensus       554 ~~~~~~~Ke~~~~~~~---~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  606 (775)
T KOG1845|consen  554 ESTTTVVKEEKPENNH---LS--SSK---RTQRRKSTGRAISVAVEKFNLRSGPNGRGQID  606 (775)
T ss_pred             cccceeecccccccch---hc--chh---ccccccccccccccchhhhccccccCCcCCcc
Confidence            11     011112221   11  111   12334689999998   357777665555444

>COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PTZ00130 heat shock protein 90; Provisional Back     alignment and domain information
>PRK05218 heat shock protein 90; Provisional Back     alignment and domain information
>PRK14083 HSP90 family protein; Provisional Back     alignment and domain information
>PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional Back     alignment and domain information
>KOG1845 consensus MORC family ATPases [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0019 consensus Molecular chaperone (HSP90 family) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0020 consensus Endoplasmic reticulum glucose-regulated protein (GRP94/endoplasmin), HSP90 family [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13589 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PDB: 3IED_A 2XCM_B 2JKI_B 3OPD_A 2O1V_B 2GQP_A 2O1W_C 1YT2_A 1TC6_A 2H8M_B Back     alignment and domain information
>PF07496 zf-CW: CW-type Zinc Finger; InterPro: IPR011124 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>PRK00095 mutL DNA mismatch repair protein; Reviewed Back     alignment and domain information
>TIGR00585 mutl DNA mismatch repair protein MutL Back     alignment and domain information
>COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair] Back     alignment and domain information
>COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG1979 consensus DNA mismatch repair protein - MLH1 family [Replication, recombination and repair] Back     alignment and domain information
>KOG1978 consensus DNA mismatch repair protein - MLH2/PMS1/Pms2 family [Replication, recombination and repair] Back     alignment and domain information
>PRK04184 DNA topoisomerase VI subunit B; Validated Back     alignment and domain information
>PRK14868 DNA topoisomerase VI subunit B; Provisional Back     alignment and domain information
>TIGR01052 top6b DNA topoisomerase VI, B subunit Back     alignment and domain information
>PRK05559 DNA topoisomerase IV subunit B; Reviewed Back     alignment and domain information
>TIGR01055 parE_Gneg DNA topoisomerase IV, B subunit, proteobacterial Back     alignment and domain information
>PRK05644 gyrB DNA gyrase subunit B; Validated Back     alignment and domain information
>PRK14939 gyrB DNA gyrase subunit B; Provisional Back     alignment and domain information
>smart00433 TOP2c TopoisomeraseII Back     alignment and domain information
>PRK14867 DNA topoisomerase VI subunit B; Provisional Back     alignment and domain information
>TIGR01059 gyrB DNA gyrase, B subunit Back     alignment and domain information
>PF02518 HATPase_c: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro: IPR003594 This domain is found in several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases [], heat shock protein HSP90 [, , ], phytochrome-like ATPases and DNA mismatch repair proteins Back     alignment and domain information
>KOG1977 consensus DNA mismatch repair protein - MLH3 family [Replication, recombination and repair] Back     alignment and domain information
>TIGR01058 parE_Gpos DNA topoisomerase IV, B subunit, Gram-positive Back     alignment and domain information
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms] Back     alignment and domain information
>PLN03237 DNA topoisomerase 2; Provisional Back     alignment and domain information
>COG0187 GyrB Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [DNA replication, recombination, and repair] Back     alignment and domain information
>smart00387 HATPase_c Histidine kinase-like ATPases Back     alignment and domain information
>cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins Back     alignment and domain information
>PRK10604 sensor protein RstB; Provisional Back     alignment and domain information
>PRK09470 cpxA two-component sensor protein; Provisional Back     alignment and domain information
>PRK10364 sensor protein ZraS; Provisional Back     alignment and domain information
>PHA02569 39 DNA topoisomerase II large subunit; Provisional Back     alignment and domain information
>PRK09467 envZ osmolarity sensor protein; Provisional Back     alignment and domain information
>COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>PRK10755 sensor protein BasS/PmrB; Provisional Back     alignment and domain information
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL Back     alignment and domain information
>TIGR01386 cztS_silS_copS heavy metal sensor kinase Back     alignment and domain information
>PRK11086 sensory histidine kinase DcuS; Provisional Back     alignment and domain information
>TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR Back     alignment and domain information
>PRK09303 adaptive-response sensory kinase; Validated Back     alignment and domain information
>PRK11006 phoR phosphate regulon sensor protein; Provisional Back     alignment and domain information
>PTZ00109 DNA gyrase subunit b; Provisional Back     alignment and domain information
>PRK10549 signal transduction histidine-protein kinase BaeS; Provisional Back     alignment and domain information
>PRK15053 dpiB sensor histidine kinase DpiB; Provisional Back     alignment and domain information
>PLN03128 DNA topoisomerase 2; Provisional Back     alignment and domain information
>PRK11100 sensory histidine kinase CreC; Provisional Back     alignment and domain information
>PTZ00108 DNA topoisomerase 2-like protein; Provisional Back     alignment and domain information
>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase Back     alignment and domain information
>PRK10815 sensor protein PhoQ; Provisional Back     alignment and domain information
>PRK11360 sensory histidine kinase AtoS; Provisional Back     alignment and domain information
>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms] Back     alignment and domain information
>PRK10337 sensor protein QseC; Provisional Back     alignment and domain information
>PRK15347 two component system sensor kinase SsrA; Provisional Back     alignment and domain information
>TIGR01925 spIIAB anti-sigma F factor Back     alignment and domain information
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional Back     alignment and domain information
>TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase Back     alignment and domain information
>PRK09835 sensor kinase CusS; Provisional Back     alignment and domain information
>PRK11073 glnL nitrogen regulation protein NR(II); Provisional Back     alignment and domain information
>PRK13837 two-component VirA-like sensor kinase; Provisional Back     alignment and domain information
>PRK11466 hybrid sensory histidine kinase TorS; Provisional Back     alignment and domain information
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS Back     alignment and domain information
>PRK10490 sensor protein KdpD; Provisional Back     alignment and domain information
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional Back     alignment and domain information
>PF13581 HATPase_c_2: Histidine kinase-like ATPase domain Back     alignment and domain information
>PRK10547 chemotaxis protein CheA; Provisional Back     alignment and domain information
>PRK11107 hybrid sensory histidine kinase BarA; Provisional Back     alignment and domain information
>KOG0787 consensus Dehydrogenase kinase [Signal transduction mechanisms] Back     alignment and domain information
>PRK04069 serine-protein kinase RsbW; Provisional Back     alignment and domain information
>COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms] Back     alignment and domain information
>PRK03660 anti-sigma F factor; Provisional Back     alignment and domain information
>TIGR01924 rsbW_low_gc serine-protein kinase RsbW Back     alignment and domain information
>PRK13557 histidine kinase; Provisional Back     alignment and domain information
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional Back     alignment and domain information
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional Back     alignment and domain information
>COG4585 Signal transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>PRK11644 sensory histidine kinase UhpB; Provisional Back     alignment and domain information
>PRK10600 nitrate/nitrite sensor protein NarX; Provisional Back     alignment and domain information
>PF07744 SPOC: SPOC domain; InterPro: IPR012921 Spen (split end) proteins regulate the expression of key transcriptional effectors in diverse signalling pathways Back     alignment and domain information
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>COG3920 Signal transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms] Back     alignment and domain information
>COG2172 RsbW Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms] Back     alignment and domain information
>COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>PRK13560 hypothetical protein; Provisional Back     alignment and domain information
>COG2972 Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms] Back     alignment and domain information
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms] Back     alignment and domain information
>COG4192 Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms] Back     alignment and domain information
>smart00249 PHD PHD zinc finger Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query749
2e61_A69 Zinc finger CW-type PWWP domain protein 1; ZF-CW d 5e-12
2l7p_A100 Histone-lysine N-methyltransferase ASHH2; CW-domai 1e-11
1b63_A333 MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A 8e-07
1h7s_A365 PMS1 protein homolog 2; DNA repair, GHL ATPase, mi 9e-07
3h4l_A367 DNA mismatch repair protein PMS1; ATP binding, DNA 1e-06
3na3_A348 DNA mismatch repair protein MLH1; MUTL protein hom 2e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-04
3ied_A272 Heat shock protein; HSP90, chaperone, structural g 1e-05
2gqp_A236 Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, 4e-05
3t0h_A228 Heat shock protein HSP 90-alpha; chaperone, ATPase 7e-05
1yc1_A264 HSP 86, heat shock protein HSP 90-alpha; cell-cycl 7e-05
1qy5_A269 Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: N 7e-05
3o0i_A256 HSP90AA1 protein; HSP90 heat-shock proteins, chape 8e-05
2wer_A220 ATP-dependent molecular chaperone HSP82; ATPase, A 1e-04
2o1u_A666 Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, 1e-04
3nmq_A239 Heat shock protein HSP 90-beta; ATPase, chaperone- 1e-04
2cg9_A 677 ATP-dependent molecular chaperone HSP82; chaperone 1e-04
2ior_A235 Chaperone protein HTPG; heat shock protein, HSP90; 1e-04
3peh_A281 Endoplasmin homolog; structural genomics, structur 2e-04
2ioq_A624 Chaperone protein HTPG; heat shock protein, HSP90; 5e-04
1y4s_A559 Chaperone protein HTPG; HSP90, molecular chaperone 7e-04
>2e61_A Zinc finger CW-type PWWP domain protein 1; ZF-CW domain, structural genomics, NPPSFA, national project protein structural and functional analyses; NMR {Homo sapiens} PDB: 2rr4_A* Length = 69 Back     alignment and structure
 Score = 60.7 bits (147), Expect = 5e-12
 Identities = 18/48 (37%), Positives = 20/48 (41%), Gaps = 4/48 (8%)

Query: 640 EWVQC--NKCRKWRMLDPGFDTKSLPVEWFCYMK--PFEGLCDLPEQK 683
            WVQC    C KWR L    D   LP  W C          CD+PE+ 
Sbjct: 17  VWVQCSFPNCGKWRRLCGNIDPSVLPDNWSCDQNTDVQYNRCDIPEET 64
>2l7p_A Histone-lysine N-methyltransferase ASHH2; CW-domain; NMR {Arabidopsis thaliana} Length = 100 Back     alignment and structure
>1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A* Length = 333 Back     alignment and structure
>1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A* Length = 365 Back     alignment and structure
>3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae} Length = 367 Back     alignment and structure
>3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens} Length = 348 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3ied_A Heat shock protein; HSP90, chaperone, structural genomics, structura genomics consortium, SGC, stress response; HET: AN2; 2.01A {Plasmodium falciparum} Length = 272 Back     alignment and structure
>2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA, NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1tc0_A* 1tbw_A* 1u0z_A* 1u2o_A* 1ysz_A* 1yt0_A* 1yt1_A* 2exl_A* 2fyp_A* 2gfd_A* 1tc6_A* 2h8m_A* 2hch_A* 2hg1_A* 3o2f_A* 2esa_A* Length = 236 Back     alignment and structure
>3t0h_A Heat shock protein HSP 90-alpha; chaperone, ATPase; 1.20A {Homo sapiens} PDB: 3r4m_A 3t0z_A* 3t10_A* 3t1k_A* 3t2s_A* 1uyl_A 1uy7_A* 1uy8_A* 1uy9_A* 1uyc_A* 1uyd_A* 1uye_A* 1uyf_A* 1uyg_A* 1uyh_A* 1uyk_A* 1uy6_A 2cdd_A* 2uwd_A* 2vci_A* ... Length = 228 Back     alignment and structure
>1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP: d.122.1.1 PDB: 1yc3_A* 1yc4_A* Length = 264 Back     alignment and structure
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A* 1u0y_A* 1yt2_A* Length = 269 Back     alignment and structure
>3o0i_A HSP90AA1 protein; HSP90 heat-shock proteins, chaperone-inhibitor complex; HET: P54; 1.47A {Homo sapiens} PDB: 2fwz_A* 2fwy_A* 2h55_A* Length = 256 Back     alignment and structure
>2wer_A ATP-dependent molecular chaperone HSP82; ATPase, ATP-binding, phosphoprotein, stress respo nucleotide-binding; HET: RDC; 1.60A {Saccharomyces cerevisiae} PDB: 2weq_A* 2wep_A* 1zwh_A* 1zw9_A* 2fxs_A* 3c11_A* 3c0e_A* 2yge_A* 2ygf_A* 2akp_A Length = 220 Back     alignment and structure
>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96; HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A* 2o1w_A 2o1t_A Length = 666 Back     alignment and structure
>3nmq_A Heat shock protein HSP 90-beta; ATPase, chaperone-chaperone inhibitor complex; HET: 7PP; 2.20A {Homo sapiens} Length = 239 Back     alignment and structure
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae} Length = 677 Back     alignment and structure
>2ior_A Chaperone protein HTPG; heat shock protein, HSP90; HET: ADP; 1.65A {Escherichia coli} Length = 235 Back     alignment and structure
>3peh_A Endoplasmin homolog; structural genomics, structural genomics consortium, SGC, HE protein, chaperone, ATP binding; HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A* Length = 281 Back     alignment and structure
>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A {Escherichia coli} PDB: 2iop_A Length = 624 Back     alignment and structure
>1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET: ADP; 2.90A {Escherichia coli} PDB: 1y4u_A Length = 559 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 749
d1h7sa2203 d.122.1.2 (A:29-231) DNA mismatch repair protein P 7e-07
d1b63a2218 d.122.1.2 (A:-2-216) DNA mismatch repair protein M 8e-05
>d1h7sa2 d.122.1.2 (A:29-231) DNA mismatch repair protein PMS2 {Human (Homo sapiens) [TaxId: 9606]} Length = 203 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
superfamily: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
family: DNA gyrase/MutL, N-terminal domain
domain: DNA mismatch repair protein PMS2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.3 bits (114), Expect = 7e-07
 Identities = 20/81 (24%), Positives = 39/81 (48%), Gaps = 7/81 (8%)

Query: 253 AIAELVDNSRDAKATKLEISIESIYFKKAGKDIPMLSIIDDGHGMTHQDVVRMTYFGHKQ 312
           A+ ELV+NS DA AT +++ ++       G D  ++ + D+G G+  ++   +T   H  
Sbjct: 10  AVKELVENSLDAGATNIDLKLK-----DYGVD--LIEVSDNGCGVEEENFEGLTLKHHTS 62

Query: 313 PDADDPNRIGRFGVGFKTGAM 333
              +  +       GF+  A+
Sbjct: 63  KIQEFADLTQVETFGFRGEAL 83
>d1b63a2 d.122.1.2 (A:-2-216) DNA mismatch repair protein MutL {Escherichia coli [TaxId: 562]} Length = 218 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query749
d2iwxa1213 HSP90 {Baker's yeast (Saccharomyces cerevisiae) [T 99.95
d1uyla_208 HSP90 {Human (Homo sapiens) [TaxId: 9606]} 99.95
d2gqpa1227 HSP90 {Dog (Canis familiaris) [TaxId: 9615]} 99.94
d1b63a2218 DNA mismatch repair protein MutL {Escherichia coli 99.66
d1h7sa2203 DNA mismatch repair protein PMS2 {Human (Homo sapi 99.65
d2hkja3219 Topoisomerase VI-B subunit {Archaeon Sulfolobus sh 99.4
d1ei1a2219 DNA gyrase B {Escherichia coli [TaxId: 562]} 98.5
d1pvga2239 DNA topoisomerase II {Baker's yeast (Saccharomyces 98.47
d1kija2212 DNA gyrase B {Thermus thermophilus [TaxId: 274]} 98.22
d1bxda_161 Histidine kinase domain of the osmosensor EnvZ {Es 98.04
d1gkza2193 Branched-chain alpha-ketoacid dehydrogenase kinase 97.83
d1id0a_146 Histidine kinase PhoQ domain {Escherichia coli [Ta 97.81
d1ysra1148 Sensor-type histidine kinase PrrB {Mycobacterium t 97.74
d1s14a_168 Topoisomerase IV subunit B {Escherichia coli [TaxI 97.73
d1jm6a2190 Pyruvate dehydrogenase kinase {Rat (Rattus norvegi 97.72
d2c2aa2161 Sensor histidine kinase TM0853 {Thermotoga maritim 97.66
d1y8oa2125 Pyruvate dehydrogenase kinase {Human (Homo sapiens 97.41
d1th8a_139 Anti-sigma factor spoIIab {Bacillus stearothermoph 97.01
d1ixma_179 Sporulation response regulatory protein Spo0B {Bac 96.88
d1r62a_156 Nitrogen regulation protein NtrB, C-terminal domai 96.2
d1weea_72 PHD finger protein At1g33420 {Thale cress (Arabido 84.74
d1we9a_64 PHD finger protein At5g26210 {Thale cress (Arabido 84.26
d1wepa_79 PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 84.14
>d2iwxa1 d.122.1.1 (A:2-214) HSP90 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
superfamily: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
family: Heat shock protein 90, HSP90, N-terminal domain
domain: HSP90
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=6.2e-28  Score=185.95  Aligned_cols=172  Identities=22%  Similarity=0.278  Sum_probs=128.7

Q ss_pred             EEEECCH-HHHHHHHCCCCCCHHHHHHHHHHCCCCCCC----------------CCCEEEEEECCCCCCCCCCCEEEEEE
Q ss_conf             1453698-899973001227999999999863602499----------------95199999600025899856899993
Q 004486          230 NFVRADP-SYLQTLGQAHSGWIFGAIAELVDNSRDAKA----------------TKLEISIESIYFKKAGKDIPMLSIID  292 (749)
Q Consensus       230 ~~~~v~~-~~L~slst~h~~~pf~AIaELIDNA~DA~A----------------t~I~I~i~~~~~~~~~~~~~~L~I~D  292 (749)
                      ..|++.. +.|..++.+.|+.+..+|+|||+||+||.+                ..+.|.+..      +.+...|.|.|
T Consensus         5 ~~Fqae~~~ll~ll~~~lYs~~~iflRELiqNa~DA~~~~~~~~~~~~~~~~~~~~~~I~i~~------d~~~~~l~i~D   78 (213)
T d2iwxa1           5 FEFQAEITQLMSLIINTVYSNKEIFLRELISNASDALDKIRYKSLSDPKQLETEPDLFIRITP------KPEQKVLEIRD   78 (213)
T ss_dssp             EECCHHHHHHHHHHHHCCCSCTTHHHHHHHHHHHHHHHHHHHHTTTCGGGGTTSCCCCEEEEE------EGGGTEEEEEE
T ss_pred             EEEHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC------CCCCCEEEEEC
T ss_conf             755663999999998851478407789998709999999887642593002577542212234------55665258842


Q ss_pred             CCCCCCHHHHHHHH-HCCCCCCC--------CCCCCCCCCCCCEEEEECCCCCCEEEEEEEECCCCCEEEEEEEECCCCE
Q ss_conf             99889977698652-20468999--------8999654433530110011126818999852799850599877049970
Q 004486          293 DGHGMTHQDVVRMT-YFGHKQPD--------ADDPNRIGRFGVGFKTGAMRLGKDALVLTQTADSRSIAFLSQSLNQGKD  363 (749)
Q Consensus       293 NG~GMs~eel~~~l-~fG~S~k~--------~~d~~~IG~FGiGfKsAsm~Lg~~v~V~Sk~~g~~s~~~ls~sf~~g~~  363 (749)
                      ||.||+.+++.+.+ .+|.|.++        ..+...|||||+||+||+| +++++.|.||+.+.....++|..  .+..
T Consensus        79 nGiGMt~~~~~~~l~~ia~S~~~~~~~~~~~~~~~~~IGqFGIGfyS~Fm-vad~v~V~trs~~~~~~~~~~~~--~~~~  155 (213)
T d2iwxa1          79 SGIGMTKAELINNLGTIAKSGTKAFMEALSAGADVSMIGQFGVGFYSLFL-VADRVQVISKSNDDEQYIWESNA--GGSF  155 (213)
T ss_dssp             CSSCCCHHHHHHHHTTCCCSTHHHHHHHHHHTCCGGGGGGGTCGGGGGGG-TEEEEEEEEECTTSCCEEEEECS--SSEE
T ss_pred             CCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHH-HCCCEEEEEECCCCCCCEEEEEC--CCCC
T ss_conf             78303588998887644000106777541000013341114601100102-23613698605886662456751--8994


Q ss_pred             EEEEE-CCCCCCCCCEEEEEECCCC-CCHHHHHHH-HHHHHCCCCHHHHH
Q ss_conf             18970-5224799938999725640-000255477-67430998502477
Q 004486          364 NLEIP-IVSYYRKGQFMELDTVVQS-EATAKYNLK-SIKEFSPFNKYLIG  410 (749)
Q Consensus       364 ~i~VP-i~~~~~~Gt~i~l~~~~~~-e~~~~~~L~-~I~kySPF~s~~I~  410 (749)
                      .+... .......||.|.++++++. ++..++.++ +|.+||.|..+||.
T Consensus       156 ~~~~~~~~~~~~~GT~I~L~lk~d~~efle~~rlk~iIkkYS~fI~~PI~  205 (213)
T d2iwxa1         156 TVTLDEVNERIGRGTILRLFLKDDQLEYLEEKRIKEVIKRHSEFVAYPIQ  205 (213)
T ss_dssp             EEEECSSSCCCSSEEEEEEEECTTCGGGGCHHHHHHHHHHHCCCCSSCEE
T ss_pred             EEEEEECCCCCCCCEEEEEEECCCHHHHCCHHHHHHHHHHHHCCCCCCEE
T ss_conf             79997125777886799998575488865999999999999607673759
>d1uyla_ d.122.1.1 (A:) HSP90 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2gqpa1 d.122.1.1 (A:74-337) HSP90 {Dog (Canis familiaris) [TaxId: 9615]} Back     information, alignment and structure
>d1h7sa2 d.122.1.2 (A:29-231) DNA mismatch repair protein PMS2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2hkja3 d.122.1.2 (A:10-228) Topoisomerase VI-B subunit {Archaeon Sulfolobus shibatae [TaxId: 2286]} Back     information, alignment and structure
>d1ei1a2 d.122.1.2 (A:2-220) DNA gyrase B {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1pvga2 d.122.1.2 (A:7-245) DNA topoisomerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1kija2 d.122.1.2 (A:9-220) DNA gyrase B {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1bxda_ d.122.1.3 (A:) Histidine kinase domain of the osmosensor EnvZ {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1gkza2 d.122.1.4 (A:186-378) Branched-chain alpha-ketoacid dehydrogenase kinase (BCK) {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1id0a_ d.122.1.3 (A:) Histidine kinase PhoQ domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ysra1 d.122.1.3 (A:299-446) Sensor-type histidine kinase PrrB {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1s14a_ d.122.1.2 (A:) Topoisomerase IV subunit B {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1jm6a2 d.122.1.4 (A:1177-1366) Pyruvate dehydrogenase kinase {Rat (Rattus norvegicus), isozyme 2 [TaxId: 10116]} Back     information, alignment and structure
>d2c2aa2 d.122.1.3 (A:321-481) Sensor histidine kinase TM0853 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1y8oa2 d.122.1.4 (A:177-301) Pyruvate dehydrogenase kinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1th8a_ d.122.1.3 (A:) Anti-sigma factor spoIIab {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1ixma_ d.123.1.1 (A:) Sporulation response regulatory protein Spo0B {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1r62a_ d.122.1.3 (A:) Nitrogen regulation protein NtrB, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure