Citrus Sinensis ID: 004489

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------75
Protein Sequence
MVGLIDLNTTEDDENPSSGSLSPSSSSASALSASGFALAPAPASASASASGVSLELWHACAGPLISLPKRGSVVVYFPQGHLEHVSDFSAAASAAYDLPPHPFCRVADVKLHAEAASDEVYAQVSLVPDELIEQKVREGKIEDGDEDSVEVVAKSSTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGLEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLRGEDGELRLGIRRAPHVKSGATFPSFCSQQSSPNSVTEVVDAIARKRAFSISYNPRASASEFIIPVNKFLKSLDHSFAVGMRFKMRFETDDAAERRYTGVIMGVGDVDPVRWPGSKWRCLLVRWDDVESNRHTRVSPWEIEPSGSVCGSNNLITSGLKRTRIGLPSGKPEFPVPDGIGVTDFGESLRFQKVLQGQEILGFNTLYDGGDCQNLHPSEVRRGILGSNGSGIAAIGDGSRNLQVKSDISYKGIGIGFGESFRFHKVLQGQEIFPKSPYGRAPTNNEARGIGSLGISDGVLVSGSRNRWSAVVPGYNTHTSPSAPPVQVSSPSSVLMFQLASNPISNYNPPYSLNDQEKEQRVNCQSFFHNSEIYGGKHASSSFLDHSFRGGDQEVMDSIGQSNEHISPPLVGQPTVRGSQDLVSSCKGSCRLFGFSLTEERHVANIEDNAAPVASPLNPRSSFLSHVGQQFHPKPPVMSKATGSNCTNVSNHCAVRDMLFDIAL
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccEEEEEccccccccccccHHHccccccccccccEEEEcccHHHcccHHHHccccccccHHHHHHHHccccccccccHHHHHHcccccEEEEEEEEccccccccccEEccccHHHccccccccccccccEEEEEcccccEEEEEEEEEccccEEEEccccHHHHHccccccccEEEEEEcccccEEEEEEEccccccccccccccccccccccHHHHHHHHHHccccccccccccccccEEEHHHHHHHHHccccccccEEEEEEEccccccEEEEEEEEEEEccccccccccccEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccc
Secondary Structure Prediction (SSPRO)
cEEEEEccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccEccccccEEEEcccccHHHHHcccccccccccccccEEEEEEEEEEEccccccEEEEEEEEcccccHHHcccccccccccccccccccccccccccEEEEccccccccccccHHHHHHHHHcccccccccccHHHHHHHHHccccEEEEEEEccccccEEEccccEEEEcccEEEcccEEEEEEcccccEEEEEEEccccccccccccEcccccHHHHHHHHHHHHHcccEEEEEEccccccccEEEEHHHHHHHHccccEEEEEEEEEEcccccccEcccEEEEEccccccccccccccEEEEEEcccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccEEEEEEEEcc
Coil and Loop (DISEMBL)
mvglidlntteddenpssgslspssssasalsasgfalapapasasasasGVSLELWHACagplislpkrgsvvvyfpqghlehvsdfsaaasaaydlpphpfcrvadvklhaeaasDEVYAQVSLVPDELIEQKVRegkiedgdedsVEVVAksstphmfcktltasdtsthggfsvprraaedcfppldysqqrpsqeLVAKDLHGLEWRfrhiyrgqprrhlltTGWSAFvnkkklvsgdavlflrgedgelrlgirraphvksgatfpsfcsqqsspnsvTEVVDAIARKRAFSisynprasasefiipVNKFLKSLDHSFAVGMRFKMRFETDDAAERRYTGVimgvgdvdpvrwpgskwrcllvrwddvesnrhtrvspweiepsgsvcgsnnlitsglkrtriglpsgkpefpvpdgigvtdfgesLRFQKVLQGqeilgfntlydggdcqnlhpsevrrgilgsngsgiaaigdgsrnlqvksdisykgigigfgeSFRFHkvlqgqeifpkspygraptnneargigslgisdgvlvsgsrnrwsavvpgynthtspsappvqvsspssVLMFQLasnpisnynppyslndqekeqrvncqsffhnseiyggkhasssfldhsfrggdqEVMDSigqsnehispplvgqptvrgsqdlvssckgscrlfgfslteerhvaniednaapvasplnprssflshvgqqfhpkppvmskatgsnctnvsnhcavRDMLFDIAL
Flexible Loop (DISEMBL)
mvglidlntteddenpssgslspSSSSASALSASGFALAPAPASASASASGVSLELWHACAGPLISLPKRGSVVVYFPQGHLEHVSDFSAAASAAYDLPPHPFCRVADVKLHAEAASDEVYAQVSLVPDELIEQKVregkiedgdedsVEVVAKSSTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGLEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLRGEDGELRLGIRRAPHVKSGATfpsfcsqqsspnSVTEVVDAIARKRAFSisynprasaseFIIPVNKFLKSLDHSFAVGMRFKMRFETDDAAERRYTGvimgvgdvdpvrwpgsKWRCLLVRWDDVESNRHtrvspweiepsgsvcgsnnLITSGLKRTRIGLPSGKPEFPVPDGIGVTDFGESLRFQKVLQGQEILGFNTLYDGGDCQNLHPSEVRRGILGSNGSGIAAIGDGSRNLQVKSDISYKGIGIGFGESFRFHKVLQGQEIFPKSPYGRAPTNNEARGIGSLGISDGVLVSGSRNRWSAVVPGYNTHTSPSAPPVQVSSPSSVLMFQLASNPISNYNPPYSLNDQEKEQRVNCQSFFHNSEIYGGKHASSSFLDHSFRGGDQEVMDSIGQSNEHISPPLVGQPTVRGSQDLVSSCKGSCRLFGFSLTEERHVANIEDNAAPVASPLNPRSSFLSHVGQQFHPKPPVMSKATGSNCTNVSNHCAVRDMLFDIAL
Low Complexity Region (SEG)
MVGLIDLNTTEDDENPssgslspssssasalsasgfalapapasasasasgVSLELWHACAGPLISLPKRGSVVVYFPQGHLEHVSDFsaaasaaYDLPPHPFCRVADVKLHAEAASDEVYAQVSLVPDELIEQKVREGKIEDGDEDSVEVVAKSSTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGLEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLRGEDGELRLGIRRAPHVKSGATFPSFCSQQSSPNSVTEVVDAIARKRAFSISYNPRASASEFIIPVNKFLKSLDHSFAVGMRFKMRFETDDAAERRYTGVIMGVGDVDPVRWPGSKWRCLLVRWDDVESNRHTRVSPWEIEPSGSVCGSNNLITSGLKRTRIGLPSGKPEFPVPDGIGVTDFGESLRFQKVLQGQEILGFNTLYDGGDCQNLHPSEVRRGILGSNGSGIAAIGDGSRNLQVKSDISYKGIGIGFGESFRFHKVLQGQEIFPKSPYGRAPTNNEARGIGSLGISDGVLVSGSRNRWSAVVPGYNTHTspsappvqvsspssvLMFQLASNPISNYNPPYSLNDQEKEQRVNCQSFFHNSEIYGGKHASSSFLDHSFRGGDQEVMDSIGQSNEHISPPLVGQPTVRGSQDLVSSCKGSCRLFGFSLTEERHVANIEDNAAPVASPLNPRSSFLSHVGQQFHPKPPVMSKATGSNCTNVSNHCAVRDMLFDIAL
Disordered region (IsUnstruct)
***************************************************VSLELWHACAGPLISLPKRGSVVVYFPQGHLEHVSDFSAAASAAYDLPPHPFCRVADVKLHAEAASDEVYAQVSLVPDELI****************************FCK*************************************LVAKDLHGLEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLRGEDGELRLGIRRAPHVK******************TEVVDAIARKRAFSISYNPRASASEFIIPVNKFLKSLDHSFAVGMRFKMRFETDDAAERRYTGVIMGVGDVDPVRWPGSKWRCLLVRWDDVESNRHTRVSPWEIEPSGSVCGSNNLITSGLKRTRIGL*****EFPVPDGIGVTDFGESLRFQKVLQGQEILGFNTLYDGGDCQNLHPSEVRRGILGSNGSGIAAIGDGSRNLQVKSDISYKGIGIGFGESFRFHKVLQGQEIFP**************GIGSLGISDGVLVSGSRNRWSAVVPGY************************************************CQSFFHNSEIYG**********************************************LVSSCKGSCRLFGFSLTEERHVA******************************************TNVSNHCAVRDMLFD***
Disordered Region (DISOPRED)
**GL**************************************************ELWHACAGPLISLPKRGSVVVYFPQGHLEH**********AYDLPPHPFCRVADVKLHAEAASDEVYAQVSLVPD*****************************HMFCKTLTASDTSTHGGFSVPRRAAEDCF************ELVAKDLHGLEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLRGEDGELRLGIRRAPHVKSGATFPSFCSQQSSPNSVTEVVDAIARKRAFSISYNPRASASEFIIPVNKFLKSLDHSFAVGMRFKMRFETDDAAERRYTGVIMGVGDVDPVRWPGSKWRCLLVRWDDVESNRHTRVSPWEIEPSG********************************************************************************************************************************************************************************************************************************************************************************************LFGFSL***************************************************VSNHCAVRDMLFDIAL
Disordered Region (DISEMBL)
MVGLIDLNTT******************************************SLELWHACAGPLISLPKRGSVVVYFPQGHLEHVSDFSAAASAAYDLPPHPFCRVADVKLHAEAASDEVYAQVSLVPDELIEQKVREGKIEDGDEDSVEVVAKSSTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGLEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLRGEDGELRLGIRRAPHVKSGATFPS************EVVDAIARKRAFSISYNPRASASEFIIPVNKFLKSLDHSFAVGMRFKMRFETDDAAERRYTGVIMGVGDVDPVRWPGSKWRCLLVRWDDVESNRHTRVSPWEIEPSGSVCGSNNLITSGLKRTRIGLPSGKPEFPVPDGIGVTDFGESLRFQKVLQGQEILGFNTLYDGGDCQNLHPSEVRRGILGSNGSGIAAIGDGSRNLQVKSDISYKGIGIGFGESFRFHKVLQGQEIFPKSPYGRAPTNNEARGIGSLGISDGVLVSGSRNRWSAVVPGYNTH*************SSVLMFQLASNPISNYNPPYSLNDQEKEQRVNCQSFFHNSEIYGGKHASSSFLDHSFRGGDQEVMDSIGQSNEHISPPLVGQPTVRGSQDLVSSCKGSCRLFGFSLTEERHVANIEDNAAPVASPLNPRSSFLSHVGQQFHPKPPVMSKATGSNCTNVSNHCAVRDMLFDIAL
Disordered Region (DISPRO)
MVG*I***T***************************************ASGVSLELWHACAGPLISLPKRGSVVVYFPQGHLEHVSDFSAAASAAYDLPPHPFCRVADVKLHAEAASDEVYAQVSLVPDEL*************************TPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGLEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLRGEDGELRLGIRRAPHVKSGATFPS*CSQQSSPNSVTEVVDAIARKRAFSISYNPRASASEFIIPVNKFLKSLDHSFAVGMRFKMRFETDDAAERRYTGVIMGVGDVDPVRWPGSKWRCLLVRWDDVESNRHTRVSPWEIEPSGSVCGSNNLITSGLK***********************************************************************************************************************************************************************************************************************************************************************************L**********************************************SNCTNVSNHCAVRDMLFDIAL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVGLIDLNTTEDDENPSSGSLSPSSSSASALSASGFALAPAPASASASASGVSLELWHACAGPLISLPKRGSVVVYFPQGHLEHVSDFSAAASAAYDLPPHPFCRVADVKLHAEAASDEVYAQVSLVPDELIEQKVREGKIEDGDEDSVEVVAKSSTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGLEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLRGEDGELRLGIRRAPHVKSGATFPSFCSQQSSPNSVTEVVDAIARKRAFSISYNPRASASEFIIPVNKFLKSLDHSFAVGMRFKMRFETDDAAERRYTGVIMGVGDVDPVRWPGSKWRCLLVRWDDVESNRHTRVSPWEIEPSGSVCGSNNLITSGLKRTRIGLPSGKPEFPVPDGIGVTDFGESLRFQKVLQGQEILGFNTLYDGGDCQNLHPSEVRRGILGSNGSGIAAIGDGSRNLQVKSDISYKGIGIGFGESFRFHKVLQGQEIFPKSPYGRAPTNNEARGIGSLGISDGVLVSGSRNRWSAVVPGYNTHTSPSAPPVQVSSPSSVLMFQLASNPISNYNPPYSLNDQEKEQRVNCQSFFHNSEIYGGKHASSSFLDHSFRGGDQEVMDSIGQSNEHISPPLVGQPTVRGSQDLVSSCKGSCRLFGFSLTEERHVANIEDNAAPVASPLNPRSSFLSHVGQQFHPKPPVMSKATGSNCTNVSNHCAVRDMLFDIAL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	749	2.2.26 [Sep-21-2011]
O23661	608	Auxin response factor 3 O	yes	no	0.642	0.791	0.614	1e-175
Q0JKI9	718	Auxin response factor 2 O	yes	no	0.922	0.962	0.465	1e-158
Q8S985	712	Auxin response factor 15	no	no	0.826	0.869	0.512	1e-154
Q5JMM1	731	Auxin response factor 3 O	no	no	0.794	0.813	0.439	1e-132
Q0DGS1	687	Auxin response factor 14	no	no	0.787	0.858	0.437	1e-123
Q9ZTX9	788	Auxin response factor 4 O	no	no	0.607	0.577	0.514	1e-122
Q5JK20	808	Auxin response factor 4 O	no	no	0.519	0.481	0.491	1e-103
Q94JM3	859	Auxin response factor 2 O	no	no	0.515	0.449	0.466	1e-102
A2ZET6	853	Auxin response factor 23	N/A	no	0.518	0.454	0.469	3e-99
Q2R3F5	853	Auxin response factor 23	no	no	0.518	0.454	0.469	6e-99

>sp|O23661|ARFC_ARATH Auxin response factor 3 OS=Arabidopsis thaliana GN=ARF3 PE=1 SV=2

 Score =  617 bits (1591), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 322/524 (61%), Positives = 385/524 (73%), Gaps = 43/524 (8%)

Query: 1   MVGLIDLNTTEDDENPSSGSLSPSSSSASALSASGFALAPAPASASASASGVSLELWHAC 60
           M GLIDLN  E +E+ +  + +PSS+S S    S  + + +  S++++  GV LELWHAC
Sbjct: 1   MGGLIDLNVMETEEDETQ-TQTPSSASGSVSPTSSSSASVSVVSSNSAGGGVCLELWHAC 59

Query: 61  AGPLISLPKRGSVVVYFPQGHLEHVSDFSAAASAAYDLPPHPFCRVADVKLHAEAASDEV 120
           AGPLISLPKRGS+V+YFPQGHLE   DFSAA    Y LPPH FCR+ DVKLHAE  +DEV
Sbjct: 60  AGPLISLPKRGSLVLYFPQGHLEQAPDFSAAI---YGLPPHVFCRILDVKLHAETTTDEV 116

Query: 121 YAQVSLVPD-ELIEQKVREGKIE-DGDEDSVEVVAKSSTPHMFCKTLTASDTSTHGGFSV 178
           YAQVSL+P+ E IE+KVREG I+ DG E+  EV+ +S+TPHMFCKTLTASDTSTHGGFSV
Sbjct: 117 YAQVSLLPESEDIERKVREGIIDVDGGEEDYEVLKRSNTPHMFCKTLTASDTSTHGGFSV 176

Query: 179 PRRAAEDCFPPLDYSQQRPSQELVAKDLHGLEWRFRHIYRGQPRRHLLTTGWSAFVNKKK 238
           PRRAAEDCFPPLDYSQ RPSQEL+A+DLHGLEWRFRHIYRGQPRRHLLTTGWSAFVNKKK
Sbjct: 177 PRRAAEDCFPPLDYSQPRPSQELLARDLHGLEWRFRHIYRGQPRRHLLTTGWSAFVNKKK 236

Query: 239 LVSGDAVLFLRGEDGELRLGIRRAPHVKSGATFPSFCSQQSSPNSVTEVVDAIARKRAFS 298
           LVSGDAVLFLRG+DG+LRLG+RRA  ++  A   +  +Q  + N+ +EV  AI+    FS
Sbjct: 237 LVSGDAVLFLRGDDGKLRLGVRRASQIEGTAALSAQYNQNMNHNNFSEVAHAISTHSVFS 296

Query: 299 ISYNPRASASEFIIPVNKFLKSLDHSFAVGMRFKMRFETDDAAERRYTGVIMGVGDVDPV 358
           ISYNP+AS S FIIP  KFLK +D+ F +GMRFK R E++DA+ERR  G+I G+ D+DP+
Sbjct: 297 ISYNPKASWSNFIIPAPKFLKVVDYPFCIGMRFKARVESEDASERRSPGIISGISDLDPI 356

Query: 359 RWPGSKWRCLLVRWDDVESNRHT-RVSPWEIEPSGSVCGSNNLITSGLKRTRIGLPSGKP 417
           RWPGSKWRCLLVRWDD+ +N H  RVSPWEIEPSGS+  S + +T+G KR+RIG  SGKP
Sbjct: 357 RWPGSKWRCLLVRWDDIVANGHQQRVSPWEIEPSGSISNSGSFVTTGPKRSRIGFSSGKP 416

Query: 418 EFPVPDGIGVTDFGESLRFQKVLQGQEIL-GF-NTLYDGGDCQNLHPSEVRRGILGSNGS 475
           + PV +GI  TDF ESLRFQ+VLQGQEI  GF NT  DGG       +  RRG       
Sbjct: 417 DIPVSEGIRATDFEESLRFQRVLQGQEIFPGFINTCSDGG-------AGARRG------- 462

Query: 476 GIAAIGDGSRNLQVKSDISYKGIGIGFGESFRFHKVLQGQEIFP 519
                               +  G  FG+S+ FHKVLQGQE  P
Sbjct: 463 --------------------RFKGTEFGDSYGFHKVLQGQETVP 486

Auxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Involved in the establishment or elaboration of tissue patterning during gynoecial development.
Arabidopsis thaliana (taxid: 3702)

>sp|Q0JKI9|ARFB_ORYSJ Auxin response factor 2 OS=Oryza sativa subsp. japonica GN=ARF2 PE=2 SV=1

 Score =  559 bits (1441), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 358/769 (46%), Positives = 457/769 (59%), Gaps = 78/769 (10%)

Query: 1   MVGLIDLNTTEDDENPSSGSLSPSSSSASALSASGFALAPAPASASASASGVSLELWHAC 60
           MVG IDLNT E++E+   G             A+G   APA A A  +   V LELWHAC
Sbjct: 1   MVG-IDLNTVEEEEDEEEGG------------ATGTVTAPAEARAGGA---VCLELWHAC 44

Query: 61  AGPLISLPKRGSVVVYFPQGHLEHVSDFSAAASAAYDLPPHPFCRVADVKLHAEAASDEV 120
           AGP+  LP++GS VVY PQGHLEH+     +   A  +PPH FCRV DV LHA+AA+DEV
Sbjct: 45  AGPVAPLPRKGSAVVYLPQGHLEHLGAAPGSGPGAA-VPPHVFCRVVDVSLHADAATDEV 103

Query: 121 YAQVSLVPD-ELIEQKVREGKIEDG------DEDSVEVVAKSSTPHMFCKTLTASDTSTH 173
           YAQVSLV D E +E+++REG  EDG       ED+V+  A+   PHMFCKTLTASDTSTH
Sbjct: 104 YAQVSLVADNEEVERRMREG--EDGAACDGEGEDAVKRPAR--IPHMFCKTLTASDTSTH 159

Query: 174 GGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGLEWRFRHIYRGQPRRHLLTTGWSAF 233
           GGFSVPRRAAEDCFPPLDYS QRP QELVAKDLHG EWRFRHIYRGQPRRHLLTTGWS F
Sbjct: 160 GGFSVPRRAAEDCFPPLDYSLQRPFQELVAKDLHGTEWRFRHIYRGQPRRHLLTTGWSGF 219

Query: 234 VNKKKLVSGDAVLFLRGEDGELRLGIRRAPHVKSGATFPSFCSQQSSPNSVTEVVDAIAR 293
           +NKKKLVSGDAVLFLRGEDGELRLG+RRA  +K+ + FP+  +Q S+ +S++EV  A+A 
Sbjct: 220 INKKKLVSGDAVLFLRGEDGELRLGVRRAAQLKNASPFPALHNQISNTSSLSEVAHAVAV 279

Query: 294 KRAFSISYNPRASASEFIIPVNKFLKSLDHSFAVGMRFKMRFETDDAAERRYTGVIMGVG 353
           K  F I YNPR S SEFIIP  KF++S    F+VGMRFK+R+E++DA+ERR TG+I+G  
Sbjct: 280 KSIFHIYYNPRLSQSEFIIPYWKFMRSFSQPFSVGMRFKLRYESEDASERRRTGIIIGSR 339

Query: 354 DVDPVRWPGSKWRCLLVRWDD-VESNRHTRVSPWEIEPSGSVCGSNNLITSGLKRTRIGL 412
           + DP+ W GSKW+CL+V+WDD VE  R   VSPWEIE SGSV GS+ L T   KR +   
Sbjct: 340 EADPM-WHGSKWKCLVVKWDDDVECRRPNGVSPWEIELSGSVSGSH-LSTPHSKRLKSCF 397

Query: 413 PSGKPEFPVPDGIGVTDFGESLRFQKVLQGQEILGF-------NTLYDGGDCQNLHPSEV 465
           P   P+  +P+G   +DF ES RF KVLQGQE+LG        NT     + +N   ++ 
Sbjct: 398 PQVNPDIVLPNGSVSSDFAESARFHKVLQGQELLGLKTRDGTVNTASQATEARNFQYTDE 457

Query: 466 RRGILGSNGSGIAAIGDGSRNLQVKSDISYKGIGIGFGESFRFHKVLQGQEIFPKSPYGR 525
           R   +  + + +     G +        SY   G  FGES RF +VLQGQE+F   PY R
Sbjct: 458 RSCSINMSNNILGVPRLGVKTPSGNPGFSYHCSG--FGESQRFQEVLQGQEVF--RPY-R 512

Query: 526 APTNNEA--RGIGSLGISDGVLVSGSRNRWSAVVPGYNTHTSPSAPPVQVSSPSSVLMFQ 583
             T ++A  RG G     DG    G+  +W A   G + H   ++   Q SSPSSVLMF 
Sbjct: 513 GGTLSDACIRGSG-FRQPDGNHAPGAAFKWLAP-QGCDHHGITTSVLPQASSPSSVLMFP 570

Query: 584 LASNPISNYNPPYSLNDQEKEQRVNCQSFFHNSEIYGGKHASSSFLDHSFRGGDQ----E 639
             S+ +      Y   D+ +  R              G     +  D + R        +
Sbjct: 571 QTSSKMPGLEYIYGCLDRNENSR----------HFKIGPTQDMTRTDQTLRLWPHLISGK 620

Query: 640 VMDSIGQSNEHISPPLVGQPTVRGSQDLVSSCKGSCRLFGFSLTEERHVANIEDNAAPVA 699
           V+D   + NE +  P+ G      ++ L ++    C++FG SLTE+    +  D      
Sbjct: 621 VLDECTR-NEKLHSPVSGAEHESNNKCLNTN---GCKIFGISLTEKAQAGDEVDCG---- 672

Query: 700 SPLNPRSSFLSHVGQQFHPKPPVMSKATGSNCTNVSNHCAVRDMLFDIA 748
                 +S+ S + Q   P+   M K+ GS+C  V     V   + DI+
Sbjct: 673 -----NASYHSRL-QSLKPQ---MPKSLGSSCATVHEQRPVVGRVVDIS 712

Auxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8S985|ARFO_ORYSJ Auxin response factor 15 OS=Oryza sativa subsp. japonica GN=ARF15 PE=2 SV=1

 Score =  545 bits (1404), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 339/662 (51%), Positives = 413/662 (62%), Gaps = 43/662 (6%)

Query: 39  APAPASASASASGVSLELWHACAGPLISLPKRGSVVVYFPQGHLEHVSDFSAAASAAYDL 98
           +PAPA A A    V LELWHACAGP+  LP++G VVVY PQGHLEH+ D  AAA+AA  +
Sbjct: 26  SPAPARAGA----VCLELWHACAGPVAPLPRKGGVVVYLPQGHLEHLGDAPAAAAAAAAV 81

Query: 99  PPHPFCRVADVKLHAEAASDEVYAQVSLVPDELIEQKVREGKIEDGDEDSVEVVAKSSTP 158
           PPH FCRV DV L A+AA+DEVYAQ+SLVP++  E+  R     +G++        +  P
Sbjct: 82  PPHVFCRVVDVTLLADAATDEVYAQLSLVPEK--EEVARRADDGEGEDGDGMKQRFARMP 139

Query: 159 HMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGLEWRFRHIYR 218
           HMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLH  EWRFRHIYR
Sbjct: 140 HMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHSTEWRFRHIYR 199

Query: 219 GQPRRHLLTTGWSAFVNKKKLVSGDAVLFLRGEDGELRLGIRRAPHVKSGATFPSFCSQQ 278
           GQPRRHLLTTGWSAFVNKKKLVSGDAVLFLRG+DGELRLG+RRA  +K+G+ FP+  +Q 
Sbjct: 200 GQPRRHLLTTGWSAFVNKKKLVSGDAVLFLRGDDGELRLGVRRAAQLKNGSAFPALYNQC 259

Query: 279 SSPNSVTEVVDAIARKRAFSISYNPRASASEFIIPVNKFLKSLDHSFAVGMRFKMRFETD 338
           S+  ++  V  A+A +  F+I YNPR S SEFI+P  KF+KSL   F+VG+RFKMR+E++
Sbjct: 260 SNLGTLANVAHAVATESVFNIYYNPRLSQSEFIVPYWKFMKSLSQPFSVGLRFKMRYESE 319

Query: 339 DAAERRYTGVIMGVGDVDPVRWPGSKWRCLLVRW-DDVESNRHTRVSPWEIEPSGSVCGS 397
           DA ERRYTG+I G GD DP+ W GSKW+CLLVRW DD E  R  RVSPWEIE + SV GS
Sbjct: 320 DATERRYTGIITGSGDTDPM-WHGSKWKCLLVRWDDDAEFRRPNRVSPWEIELTSSVSGS 378

Query: 398 NNLITSGLKRTRIGLPSGKPEFPVPDGIGVTDFGESLRFQKVLQGQEILGFNTLYDGGD- 456
            +L T   KR +  LP   PE+ VP G G  DF ES +F KVLQGQE+LGF +   GG  
Sbjct: 379 -HLSTPHSKRLKPCLPHVNPEYMVPRGGGCPDFAESAQFHKVLQGQELLGFKS--HGGTA 435

Query: 457 ------CQNLHPSEVRRGILGSNGS----GIAAIGDGSRNLQVKSDISYKGIGIGFGESF 506
                 C+  H   +      S+ S    G+  +GD  R        SY     GFGES 
Sbjct: 436 AATSQPCEARHLQYIDERSCSSDASNSILGVPRLGD--RAPLGNPGFSYH--CSGFGESH 491

Query: 507 RFHKVLQGQEIFPKSPYGRAPTNNEARGIGSLGISDGVLVSGSRNRWSAVVPGYNTHTSP 566
           R  KVLQGQE+F   PY R    + + G       D     G  N+W A + G      P
Sbjct: 492 RLQKVLQGQELF--RPY-RGTLVDASMGSNGFHQQDSPRAPGVVNKWQAQLHGRAAFHGP 548

Query: 567 SAPPV--QVSSPSSVLMFQLASNPISNYNPPY-SLNDQEKEQRVNCQSFFHNSEIYGGKH 623
            A  +  Q SSP SVLMFQ A++ +      +  L+  E ++RV     F  SE    + 
Sbjct: 549 PALALPSQSSSPPSVLMFQQANSKMPRLEFGHGQLDKHENDRRVR----FGPSEGIERRE 604

Query: 624 ASSSFLDHSFRGGDQEVMDSIGQSNEHISPPLVGQPTVRGSQDLVSSCKGSCRLFGFSLT 683
                  +   G   EV+D      +  SP   G    +   D  +    SC++FG SLT
Sbjct: 605 QRIPLQPYPTSG---EVIDGQVTVEKSHSPGRHG----KDGPDNKAVGTNSCKIFGISLT 657

Query: 684 EE 685
           E+
Sbjct: 658 EK 659

Auxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q5JMM1|ARFC_ORYSJ Auxin response factor 3 OS=Oryza sativa subsp. japonica GN=ARF3 PE=2 SV=1

 Score =  472 bits (1214), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 292/664 (43%), Positives = 380/664 (57%), Gaps = 69/664 (10%)

Query: 39  APAPASASASASGVSLELWHACAGPLISLPKRGSVVVYFPQGHLEHVSDFSAA-ASAAYD 97
           APAP         V  +LWHACAGP++SLP+RGS VVY PQGHL             A  
Sbjct: 73  APAPGP-------VCRDLWHACAGPVVSLPRRGSAVVYLPQGHLSAAGAGGGIRGEVAVA 125

Query: 98  LPPHPFCRVADVKLHAEAASDEVYAQVSLVPD-ELIEQKVREGKIEDGDEDSVEVVA-KS 155
           LPPH  CRV DV+L A+AA+DEVYA+++L  + E+ E+ +  G IE  D+        KS
Sbjct: 126 LPPHVACRVVDVELCADAATDEVYARLALRAEGEVFERNLHGGGIEREDDMEDGDEERKS 185

Query: 156 STPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGLEWRFRH 215
              HMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLD+ Q RPSQELVAKDLHG +WRFRH
Sbjct: 186 RMLHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDHKQLRPSQELVAKDLHGAKWRFRH 245

Query: 216 IYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLRGEDGELRLGIRRAPHVKSGATFPSFC 275
           IYRGQPRRHLLTTGWS+FVNKKKLVSGDAVLFLRG+DGELRLG+RRA  +K+ A F +F 
Sbjct: 246 IYRGQPRRHLLTTGWSSFVNKKKLVSGDAVLFLRGDDGELRLGVRRATQLKNEAIFKAFS 305

Query: 276 SQQSSPNSVTEVVDAIARKRAFSISYNPRASASEFIIPVNKFLKSLDHSFAVGMRFKMRF 335
           S+ S   +++ V D++     F I YNPRA+ASE+++P  KF+KS +H   +GMRFK  F
Sbjct: 306 SESSKMRTLSAVADSLKHGSVFHICYNPRATASEYVVPYWKFVKSFNHPVCIGMRFKFHF 365

Query: 336 ETDDAAERRYTGVIMGVGDVDPVRWPGSKWRCLLVRWDD-VESNRHTRVSPWEIE-PSGS 393
           E++D  ERR +G+I GV +VDP+RWPGSKWR LLVRW+D  + N   RVSPWEIE   GS
Sbjct: 366 ESEDVNERR-SGMIAGVSEVDPIRWPGSKWRSLLVRWEDATDCNSQNRVSPWEIEIVGGS 424

Query: 394 VCGSNNLITSGLKRTRIGLPSGKPEFPVPDGIGVTDFGESLRFQKVLQGQEILGFNTLYD 453
           +  +++L  S  KRT++  P G  + P   G G  D  E+ +F +VLQGQE++G  T   
Sbjct: 425 ISVAHSLSASSSKRTKL-CPQGNLDVPALYGNGRPDSVETEKFPRVLQGQELMGSRTHRA 483

Query: 454 GGDCQNL------------HPSEVRRGILGSNGSGIAAIGDGSRNLQVKSDISYKGIGIG 501
               Q++              ++ R  +LGS+ S +     G           Y    + 
Sbjct: 484 TCSPQSIDITKSKSFDAWRFLTDTRSCMLGSSTSRLPVQYSG-----------YTHQSVS 532

Query: 502 FGESFRFHKVLQGQEIFPKSPYGRAPTNNEARGIGSLGISDGVLVSGSRNRWSAVVPGYN 561
           FGES  F +VLQGQEI    P  +    +         + + V    + N  S+   GY 
Sbjct: 533 FGESIGFPEVLQGQEISQTVPPFQGMLPDACSAKSRYELKNYVCTPATMNGLSSANEGYC 592

Query: 562 THTSPSAPPVQVSSPSSVLMFQLASNPISNYNPPYSLNDQEKEQRVNCQSFFHNSEIYGG 621
              S     V  S PSS++++Q          P   L  +  ++               G
Sbjct: 593 LSLS----TVPPSPPSSLMLYQTGV-------PQLELASKNNDK--------------SG 627

Query: 622 KHASSSFLDHSFRGGDQEVMDSIGQSNEHISPPLVGQPTVRGSQDLVSSCKGSCRLFGFS 681
             +  +   H            IG+++   +P    +P   G +      + SCRLFGFS
Sbjct: 628 NDSQPALRQHKLLSETSWDQFKIGKAS---TPGNATKPGNGGRE----VDRTSCRLFGFS 680

Query: 682 LTEE 685
           LTE+
Sbjct: 681 LTEK 684

Auxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q0DGS1|ARFN_ORYSJ Auxin response factor 14 OS=Oryza sativa subsp. japonica GN=ARF14 PE=2 SV=2

 Score =  444 bits (1142), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 286/654 (43%), Positives = 372/654 (56%), Gaps = 64/654 (9%)

Query: 55  ELWHACAGPLISLPKRGSVVVYFPQGHLE-HVSDFSAAASAAYDLPPHPFCRVADVKLHA 113
           ELWHACAGP ++LP+RGS +VY PQ HL           + A  +PPH  CRV  V+L A
Sbjct: 23  ELWHACAGPGVALPRRGSALVYLPQAHLAADGGGGEVPPAGAAAVPPHVACRVVGVELRA 82

Query: 114 EAASDEVYAQVSLVPD-ELIEQKVREGKIEDGDEDSVEVVA--KSSTPHMFCKTLTASDT 170
           +AA+DEVYA+++LV + E++++  REG  EDG  +     A  K   PHMFCKTLTASDT
Sbjct: 83  DAATDEVYARLALVAEGEMLQRNFREGGGEDGAGEMEGCDAEKKPRMPHMFCKTLTASDT 142

Query: 171 STHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGLEWRFRHIYRGQPRRHLLTTGW 230
           STHGGFSVPRRAAEDCFPPLDY   RPSQEL+A DLHG +W+FRHIYRGQPRRHLLT GW
Sbjct: 143 STHGGFSVPRRAAEDCFPPLDYKTVRPSQELIAVDLHGTQWKFRHIYRGQPRRHLLTIGW 202

Query: 231 SAFVNKKKLVSGDAVLFLRGEDGELRLGIRRAPHVKSGATFPSFCSQQSSPNSVTEVVDA 290
           S+FVN+KKLVSGDAVLFLRG+DG+LRLG+RRA  +++ A F    S  S    ++ V  +
Sbjct: 203 SSFVNRKKLVSGDAVLFLRGDDGQLRLGVRRAVQLRNEALFEPVNSSDSKLRILSSVASS 262

Query: 291 IARKRAFSISYNPRASASEFIIPVNKFLKSLDHSFAVGMRFKMRFETDDAAERRYTGVIM 350
           +  K  F I +NPR+ ASEFI+P  + LKSL+H F++GMRF++ +E++DA ER   G+I 
Sbjct: 263 LENKSVFHICFNPRSGASEFIVPYWRLLKSLNHPFSIGMRFRVCYESEDANERS-AGLIS 321

Query: 351 GVGDVDPVRWPGSKWRCLLVRWDD-VESNRHTRVSPWEIEPSGSVCGSNNLITSGLKRTR 409
           G+ +VDP+RWPGS+W+CLLVRWDD  +S+   RVSPWEIE  G      + ++SG KRT+
Sbjct: 322 GISEVDPIRWPGSRWKCLLVRWDDSTDSSHQNRVSPWEIERVGGSVSVTHSLSSGSKRTK 381

Query: 410 IGLPSGKPEFPVPDGIGVTDFGESLRFQKVLQGQEILGFNTLYDGGDCQ------NLHPS 463
           +  P G  + P  +G G  D   +  F +VLQGQE  G  +   G  C       N    
Sbjct: 382 LHFPQGSLDTPFLNGNGHPDSMGTENFHRVLQGQEFRGSRS--HGVVCSESPGVPNFQSP 439

Query: 464 EVRRGILGSNGSGIAAIGDGSRNLQVKSDISYKGIGIGFGESFRFHKVLQGQEIFPKSPY 523
           + RR      G  + A G   RN    ++ +Y+   IGF ES  F +VLQGQE+    P 
Sbjct: 440 DNRRFSADMRGYMMPASGPPQRN----TEFTYQ--PIGFSESLGFPEVLQGQEMSQVVPL 493

Query: 524 GRAPTNNEARGIGSLGISDGVLVSGSRNRWSAVVPGYNTHTSPSAPPVQVSSPSSVLMFQ 583
            R  T                   G+R +   VV         SA  V  S+  S L+  
Sbjct: 494 FRGAT------------------FGARTQNDRVV---------SANSVHRSAAQSGLLAS 526

Query: 584 LASNPISNYNPPYSLNDQEKEQRVNCQSFFHNSEIYGG---------KHASSSFLDHSFR 634
              +PIS +    S         +  Q+   N E   G         + AS   L  +  
Sbjct: 527 TLGHPISQFTLSSSKVSSPSSVLMFNQATAPNHETVSGTNNKGMHVSQFASQEMLSETVT 586

Query: 635 G-GDQEVMDSIGQSNE----HISPPLVGQPTVRGSQDLVSSCKGSCRLFGFSLT 683
             G Q    S   SN+     I  P  G  +    +D   + + SCRLFGFSLT
Sbjct: 587 WPGTQRQTPSEITSNQFALARIPAPPSGAESGLPKRD---AGRSSCRLFGFSLT 637

Auxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9ZTX9|ARFD_ARATH Auxin response factor 4 OS=Arabidopsis thaliana GN=ARF4 PE=1 SV=1

 Score =  440 bits (1131), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 245/476 (51%), Positives = 304/476 (63%), Gaps = 21/476 (4%)

Query: 55  ELWHACAGPLISLPKRGSVVVYFPQGHLEH---VSDFSAAASAAYDLPPHPFCRVADVKL 111
           ELWHACAGPL  LPK+G+VVVYFPQGHLE    VS  S      +DL P   CRV +V+L
Sbjct: 65  ELWHACAGPLTCLPKKGNVVVYFPQGHLEQDAMVSYSSPLEIPKFDLNPQIVCRVVNVQL 124

Query: 112 HAEAASDEVYAQVSLVPDE---LIEQKVREGKIEDGDEDSVEVVAKSSTPHMFCKTLTAS 168
            A   +DEVY QV+L+P +   ++  + +E K   G+E+     +   TPHMFCKTLTAS
Sbjct: 125 LANKDTDEVYTQVTLLPLQEFSMLNGEGKEVKELGGEEERNGSSSVKRTPHMFCKTLTAS 184

Query: 169 DTSTHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGLEWRFRHIYRGQPRRHLLTT 228
           DTSTHGGFSVPRRAAEDCF PLDY QQRPSQEL+AKDLHG+EW+FRHIYRGQPRRHLLTT
Sbjct: 185 DTSTHGGFSVPRRAAEDCFAPLDYKQQRPSQELIAKDLHGVEWKFRHIYRGQPRRHLLTT 244

Query: 229 GWSAFVNKKKLVSGDAVLFLRGEDGELRLGIRRAPHVKSGATFPSFCSQQSSPNSVTEVV 288
           GWS FV++K LVSGDAVLFLR E GELRLGIRRA   ++G    S   + S  N ++ V 
Sbjct: 245 GWSIFVSQKNLVSGDAVLFLRDEGGELRLGIRRAARPRNGLP-DSIIEKNSCSNILSLVA 303

Query: 289 DAIARKRAFSISYNPRASASEFIIPVNKFLKSLDHSFAVGMRFKMRFETDDAAERRYTGV 348
           +A++ K  F + Y+PRA+ +EF+IP  K++ S+     +G RF+MRFE DD+ ERR  GV
Sbjct: 304 NAVSTKSMFHVFYSPRATHAEFVIPYEKYITSIRSPVCIGTRFRMRFEMDDSPERRCAGV 363

Query: 349 IMGVGDVDPVRWPGSKWRCLLVRWDD-VESNRHTRVSPWEIEPSGSVCGSNNLITSGLKR 407
           + GV D+DP RWP SKWRCLLVRWD+   S+   RVSPWEI+PS S+   +   +   KR
Sbjct: 364 VTGVCDLDPYRWPNSKWRCLLVRWDESFVSDHQERVSPWEIDPSVSLPHLSIQSSPRPKR 423

Query: 408 TRIG-LPSGKPEFPVPDGIGVTDFGESLRFQKVLQGQEILGFNTLYDGGDCQNLHPSEVR 466
              G L +  P  P+    G  DF ES+R  KVLQGQE +G  +   G D  N       
Sbjct: 424 PWAGLLDTTPPGNPITKRGGFLDFEESVRPSKVLQGQENIGSASPSQGFDVMN------- 476

Query: 467 RGILGSNGSGIAAIGDGSRNLQVKSDISYKGIGI-----GFGESFRFHKVLQGQEI 517
           R IL       A     S  ++ +        G+     G  +  RF +VLQGQEI
Sbjct: 477 RRILDFAMQSHANPVLVSSRVKDRFGEFVDATGVNPACSGVMDLDRFPRVLQGQEI 532

Auxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression.

Arabidopsis thaliana (taxid: 3702)

>sp|Q5JK20|ARFD_ORYSJ Auxin response factor 4 OS=Oryza sativa subsp. japonica GN=ARF4 PE=2 SV=1

 Score =  377 bits (968), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 200/407 (49%), Positives = 262/407 (64%), Gaps = 18/407 (4%)

Query: 55  ELWHACAGPLISLPKRGSVVVYFPQGHLEHV----SDFSAAASAAYDLPPHPFCRVADVK 110
           ELWHACAGPL+++P+ G +V YFPQGH+E V    +  + +    YDLP    CRV +V+
Sbjct: 24  ELWHACAGPLVTVPRVGDLVFYFPQGHIEQVEASMNQVADSQMRLYDLPSKLLCRVLNVE 83

Query: 111 LHAEAASDEVYAQVSLVPDELIEQKVREGKIEDGDEDSVEVVAKSSTPHMFCKTLTASDT 170
           L AE  +DEVYAQV L+P    E +  E  +E     S  V A+      FCKTLTASDT
Sbjct: 84  LKAEQDTDEVYAQVMLMP----EPEQNEMAVEKTTPTSGPVQARPPV-RSFCKTLTASDT 138

Query: 171 STHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGLEWRFRHIYRGQPRRHLLTTGW 230
           STHGGFSV RR A++C PPLD +Q  P+QELVAKDLH ++WRFRHI+RGQPRRHLL +GW
Sbjct: 139 STHGGFSVLRRHADECLPPLDMTQSPPTQELVAKDLHSMDWRFRHIFRGQPRRHLLQSGW 198

Query: 231 SAFVNKKKLVSGDAVLFLRGEDGELRLGIRRAPHVKSGATFPSFCSQQSSPNSVTEVVDA 290
           S FV+ K+LV+GDA +FLRGE+GELR+G+RRA    S        SQ      +     A
Sbjct: 199 SVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQLSNVPSSVISSQSMHLGVLATAWHA 258

Query: 291 IARKRAFSISYNPRASASEFIIPVNKFLKSLDHSFAVGMRFKMRFETDDAAERRYTGVIM 350
           I  K  F++ Y PR S SEFIIP +++++S+ ++++VGMRF+MRFE ++A E+R+TG I+
Sbjct: 259 INTKSMFTVYYKPRTSPSEFIIPYDQYMESVKNNYSVGMRFRMRFEGEEAPEQRFTGTII 318

Query: 351 GVGDVDPVRWPGSKWRCLLVRWDDVES-NRHTRVSPWEIEPSGSVCGSNNLITSGLKRTR 409
           G  ++DPV WP S WR L VRWD+  +  R  RVSPW+IEP+ S    N L  S +KR R
Sbjct: 319 GSENLDPV-WPESSWRSLKVRWDEPSTIPRPDRVSPWKIEPASS-PPVNPLPLSRVKRPR 376

Query: 410 IGLPSGKPEFPVPDGIGV----TDFGESLRFQK--VLQGQEILGFNT 450
              P   PE P+          TD  ++ R Q   VLQGQE +   +
Sbjct: 377 PNAPPASPESPILTKEAATKVDTDPAQAQRSQNSTVLQGQEQMTLRS 423

Auxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q94JM3|ARFB_ARATH Auxin response factor 2 OS=Arabidopsis thaliana GN=ARF2 PE=1 SV=2

 Score =  373 bits (958), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 192/412 (46%), Positives = 260/412 (63%), Gaps = 26/412 (6%)

Query: 55  ELWHACAGPLISLPKRGSVVVYFPQGHLEHVSDFSAAASAA----YDLPPHPFCRVADVK 110
           ELWHACAGPL+++P++   V YFPQGH+E V   +  A+      YDLP    CRV +V 
Sbjct: 61  ELWHACAGPLVTVPRQDDRVFYFPQGHIEQVEASTNQAAEQQMPLYDLPSKLLCRVINVD 120

Query: 111 LHAEAASDEVYAQVSLVPDELIEQKVREGKIEDGDEDSVEVVAKSSTP-----HMFCKTL 165
           L AEA +DEVYAQ++L+P+             + DE+++E  A    P     H FCKTL
Sbjct: 121 LKAEADTDEVYAQITLLPEA------------NQDENAIEKEAPLPPPPRFQVHSFCKTL 168

Query: 166 TASDTSTHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGLEWRFRHIYRGQPRRHL 225
           TASDTSTHGGFSV RR A++C PPLD S+Q P+QELVAKDLH  EWRFRHI+RGQPRRHL
Sbjct: 169 TASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELVAKDLHANEWRFRHIFRGQPRRHL 228

Query: 226 LTTGWSAFVNKKKLVSGDAVLFLRGEDGELRLGIRRAPHVKSGATFPSFCSQQSSPNSVT 285
           L +GWS FV+ K+LV+GDA +FLRGE+GELR+G+RRA   +         S       + 
Sbjct: 229 LQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLA 288

Query: 286 EVVDAIARKRAFSISYNPRASASEFIIPVNKFLKSLDHSFAVGMRFKMRFETDDAAERRY 345
               AI+    F++ Y PR S SEFI+P +++++S+ +++++GMRFKMRFE ++A E+R+
Sbjct: 289 TAWHAISTGTMFTVYYKPRTSPSEFIVPFDQYMESVKNNYSIGMRFKMRFEGEEAPEQRF 348

Query: 346 TGVIMGVGDVDPVRWPGSKWRCLLVRWDDVES-NRHTRVSPWEIEPSGSVCGSNNLITSG 404
           TG I+G+ + DP RWP SKWR L VRWD+  S  R  RVSPW++EP+ +    + +    
Sbjct: 349 TGTIVGIEESDPTRWPKSKWRSLKVRWDETSSIPRPDRVSPWKVEPALAPPALSPVPMPR 408

Query: 405 LKRTRIGLPSGKPEFPVPDGIGVT----DFGESLRFQKVLQGQEILGFNTLY 452
            KR R  +    P+  +    G T    D   +    +VLQGQE     T +
Sbjct: 409 PKRPRSNIAPSSPDSSMLTREGTTKANMDPLPASGLSRVLQGQEYSTLRTKH 460

Auxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Promotes flowering, stamen development, floral organ abscission and fruit dehiscence. Functions independently of ethylene and cytokinin response pathways. May act as a repressor of cell division and organ growth.

Arabidopsis thaliana (taxid: 3702)

>sp|A2ZET6|ARFW_ORYSI Auxin response factor 23 OS=Oryza sativa subsp. indica GN=ARF23 PE=2 SV=1

 Score =  363 bits (931), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 187/398 (46%), Positives = 249/398 (62%), Gaps = 10/398 (2%)

Query: 55  ELWHACAGPLISLPKRGSVVVYFPQGHLEHV----SDFSAAASAAYDLPPHPFCRVADVK 110
           ELW ACAGPL+++P+ G  V YFPQGH+E V    +         Y+LP    C V +V+
Sbjct: 41  ELWSACAGPLVTVPRVGEKVFYFPQGHIEQVEASTNQVGEQRMQLYNLPWKILCEVMNVE 100

Query: 111 LHAEAASDEVYAQVSLVPDELIEQKVREGKIEDGDEDSVEVVAKSSTPHMFCKTLTASDT 170
           L AE  +DEVYAQ++L+P+  ++Q+   G  E+    +          H FCKTLTASDT
Sbjct: 101 LKAEPDTDEVYAQLTLLPE--LKQQEDNGSTEEEVPSAPAAGHVRPRVHSFCKTLTASDT 158

Query: 171 STHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGLEWRFRHIYRGQPRRHLLTTGW 230
           STHGGFSV RR A++C PPLD S+Q P+QELVAKDLHG+EWRFRHI+RGQPRRHLL +GW
Sbjct: 159 STHGGFSVLRRHADECLPPLDMSRQPPTQELVAKDLHGVEWRFRHIFRGQPRRHLLQSGW 218

Query: 231 SAFVNKKKLVSGDAVLFLRGEDGELRLGIRRAPHVKSGATFPSFCSQQSSPNSVTEVVDA 290
           S FV+ K+LV+GDA +FLRGE+GELR+G+RRA   ++        S       +     A
Sbjct: 219 SVFVSAKRLVAGDAFIFLRGENGELRVGVRRAMRQQTNVPSSVISSHSMHLGVLATAWHA 278

Query: 291 IARKRAFSISYNPRASASEFIIPVNKFLKSLDHSFAVGMRFKMRFETDDAAERRYTGVIM 350
           +     F++ Y PR S +EF++P +++++SL  ++++GMRFKMRFE ++A E+R+TG I+
Sbjct: 279 VNTGTMFTVYYKPRTSPAEFVVPYDRYMESLKRNYSIGMRFKMRFEGEEAPEQRFTGTIV 338

Query: 351 GVGDVDPVRWPGSKWRCLLVRWDDVES-NRHTRVSPWEIEPSGSVCGSNNLITSGLKRTR 409
           G+GD DP  WP SKWR L VRWD+  S  R  RVSPW+IEP+ S    N L     KR R
Sbjct: 339 GMGDSDPAGWPESKWRSLKVRWDEASSIPRPERVSPWQIEPAVSPPPVNPLPVPRTKRLR 398

Query: 410 ---IGLPSGKPEFPVPDGIGVTDFGESLRFQKVLQGQE 444
                LP+            V    E    Q+  Q QE
Sbjct: 399 PNATALPADSSAIAKEAATKVVVESEPNGTQRTFQTQE 436

Auxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q2R3F5|ARFW_ORYSJ Auxin response factor 23 OS=Oryza sativa subsp. japonica GN=ARF23 PE=1 SV=2

 Score =  362 bits (929), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 187/398 (46%), Positives = 248/398 (62%), Gaps = 10/398 (2%)

Query: 55  ELWHACAGPLISLPKRGSVVVYFPQGHLEHV----SDFSAAASAAYDLPPHPFCRVADVK 110
           ELW ACAGPL+++P+ G  V YFPQGH+E V    +         Y+LP    C V +V+
Sbjct: 41  ELWSACAGPLVTVPRVGEKVFYFPQGHIEQVEASTNQVGEQRMQLYNLPWKILCEVMNVE 100

Query: 111 LHAEAASDEVYAQVSLVPDELIEQKVREGKIEDGDEDSVEVVAKSSTPHMFCKTLTASDT 170
           L AE  +DEVYAQ++L+P+   +Q+   G  E+    +          H FCKTLTASDT
Sbjct: 101 LKAEPDTDEVYAQLTLLPES--KQQEDNGSTEEEVPSAPAAGHVRPRVHSFCKTLTASDT 158

Query: 171 STHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGLEWRFRHIYRGQPRRHLLTTGW 230
           STHGGFSV RR A++C PPLD S+Q P+QELVAKDLHG+EWRFRHI+RGQPRRHLL +GW
Sbjct: 159 STHGGFSVLRRHADECLPPLDMSRQPPTQELVAKDLHGVEWRFRHIFRGQPRRHLLQSGW 218

Query: 231 SAFVNKKKLVSGDAVLFLRGEDGELRLGIRRAPHVKSGATFPSFCSQQSSPNSVTEVVDA 290
           S FV+ K+LV+GDA +FLRGE+GELR+G+RRA   ++        S       +     A
Sbjct: 219 SVFVSAKRLVAGDAFIFLRGENGELRVGVRRAMRQQTNVPSSVISSHSMHLGVLATAWHA 278

Query: 291 IARKRAFSISYNPRASASEFIIPVNKFLKSLDHSFAVGMRFKMRFETDDAAERRYTGVIM 350
           +     F++ Y PR S +EF++P +++++SL  ++++GMRFKMRFE ++A E+R+TG I+
Sbjct: 279 VNTGTMFTVYYKPRTSPAEFVVPYDRYMESLKQNYSIGMRFKMRFEGEEAPEQRFTGTIV 338

Query: 351 GVGDVDPVRWPGSKWRCLLVRWDDVES-NRHTRVSPWEIEPSGSVCGSNNLITSGLKRTR 409
           G+GD DP  WP SKWR L VRWD+  S  R  RVSPW+IEP+ S    N L     KR R
Sbjct: 339 GMGDSDPAGWPESKWRSLKVRWDEASSIPRPERVSPWQIEPAVSPPPVNPLPVPRTKRLR 398

Query: 410 ---IGLPSGKPEFPVPDGIGVTDFGESLRFQKVLQGQE 444
                LP+            V    E    Q+  Q QE
Sbjct: 399 PNATALPADSSAIAKEAATKVVVESEPNGTQRTFQTQE 436

Auxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	749
255562988	730	Auxin response factor, putative [Ricinus	0.958	0.983	0.669	0.0
359483904	740	PREDICTED: auxin response factor 3-like	0.978	0.990	0.674	0.0
297740441	701	unnamed protein product [Vitis vinifera]	0.933	0.997	0.657	0.0
147770011	831	hypothetical protein VITISV_009739 [Viti	0.930	0.838	0.629	0.0
224116336	714	predicted protein [Populus trichocarpa]	0.935	0.981	0.64	0.0
356549269	736	PREDICTED: auxin response factor 3-like	0.959	0.976	0.610	0.0
224077042	709	predicted protein [Populus trichocarpa]	0.910	0.961	0.618	0.0
302398565	712	ARF domain class transcription factor [M	0.921	0.969	0.620	0.0
356521420	709	PREDICTED: auxin response factor 3-like	0.923	0.976	0.600	0.0
356548656	714	PREDICTED: auxin response factor 3-like	0.931	0.977	0.603	0.0

>gi|255562988|ref|XP_002522498.1| Auxin response factor, putative [Ricinus communis] gi|223538189|gb|EEF39798.1| Auxin response factor, putative [Ricinus communis]

 Score =  961 bits (2483), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 499/745 (66%), Positives = 581/745 (77%), Gaps = 27/745 (3%)

Query: 1   MVGLIDLNTTEDDENPSSGSLSPSSSSASALSASGFA---LAPAPASASASASGVSLELW 57
           MVG+IDLNTTE+DE  +  S S SS S+S+ +++  +   L+ AP S S     V LELW
Sbjct: 1   MVGIIDLNTTEEDEKTTPSSGSFSSPSSSSSTSAALSATNLSSAPVSGS-----VCLELW 55

Query: 58  HACAGPLISLPKRGSVVVYFPQGHLEHVSDFSAAASAAYDLPPHPFCRVADVKLHAEAAS 117
           HACAGPLISLPK+GSVVVYFPQGHLE + D   A    YDLP + FCRV DVKLHAE A+
Sbjct: 56  HACAGPLISLPKKGSVVVYFPQGHLEQLPDLPLAV---YDLPSYIFCRVVDVKLHAETAN 112

Query: 118 DEVYAQVSLVPD-ELIEQKVREGKIE-DGDEDSVEVVAKSSTPHMFCKTLTASDTSTHGG 175
           DEVYAQVSLVPD E IEQK+++GK+E   +E+ VE V KS+T HMFCKTLTASDTSTHGG
Sbjct: 113 DEVYAQVSLVPDSEQIEQKLKQGKLEGHCEEEDVEAVVKSTTTHMFCKTLTASDTSTHGG 172

Query: 176 FSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGLEWRFRHIYRGQPRRHLLTTGWSAFVN 235
           FSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHG EW+FRHIYRGQPRRHLLTTGWSAFVN
Sbjct: 173 FSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGFEWKFRHIYRGQPRRHLLTTGWSAFVN 232

Query: 236 KKKLVSGDAVLFLRGEDGELRLGIRRAPHVKSGATFPSFCSQQSSPNSVTEVVDAIARKR 295
           KKKLVSGDAVLFLRG+DGELRLGIRRA  VK GA+FP+ CSQQ + +++T+VV A++ + 
Sbjct: 233 KKKLVSGDAVLFLRGDDGELRLGIRRAAQVKCGASFPALCSQQLNQSTLTDVVHAMSMRS 292

Query: 296 AFSISYNPRASASEFIIPVNKFLKSLDHSFAVGMRFKMRFETDDAAERRYTGVIMGVGDV 355
            F+I YNPRAS+SEFIIP++KFLKSLD+SF+VGMRFKMRFET+DAAERRY G+I G+ D+
Sbjct: 293 LFNICYNPRASSSEFIIPLHKFLKSLDYSFSVGMRFKMRFETEDAAERRYMGLITGISDL 352

Query: 356 DPVRWPGSKWRCLLVRWDDVESNRHTRVSPWEIEPSGSVCGSNNLITSGLKRTRIGLPSG 415
           DP RWPGSKWRCL+VRWDD+E+NRH+RVSPWEIEPSGSV   N+ +T GLKR+R G PS 
Sbjct: 353 DPARWPGSKWRCLVVRWDDMETNRHSRVSPWEIEPSGSVSSCNSFMTPGLKRSRSGFPSS 412

Query: 416 KPEFPVPDGIGVTDFGESLRFQKVLQGQEILGFNTLYDGGDCQNLHPSEVRRGILGSNGS 475
           KPEFPVPDGIG +DFGE  RFQKVLQGQEIL FNTLYDG D QN HPS++RR   GS  S
Sbjct: 413 KPEFPVPDGIGASDFGEPSRFQKVLQGQEILNFNTLYDGVD-QNRHPSDIRRCFPGSRSS 471

Query: 476 GIAAIGDGSRNLQVKSDISYKGIGIGFGESFRFHKVLQGQEIFPKSPYGRAP-TNNEARG 534
            IA   +G+R+  V SD+SYK   IGF ES RFHKVLQGQEI P SP+GRAP + NEA  
Sbjct: 472 MIATTRNGARDPVVNSDVSYK--SIGFSESLRFHKVLQGQEIIPSSPFGRAPASTNEACE 529

Query: 535 IGSLGISDGVLVSGSRNRWSAVVPGYNTHTSPSAPPVQVSSPSSVLMFQLASNPISNYNP 594
            G  GISDGV ++ SRN WS+++ GYNT      PP QVSSP SVLMFQ ASN +SN +P
Sbjct: 530 NGCFGISDGVQMTSSRNGWSSMMQGYNTRIR---PPAQVSSPCSVLMFQQASNQVSNPSP 586

Query: 595 PYSLNDQEKEQRVNCQSFFHNSEIYGGKHASSSFLDHSFRGGDQEVMDSIGQSNEH---- 650
            Y  ND E EQ VN QS+FHN E  G K  SSS  +H FR  +Q  MDS   S+EH    
Sbjct: 587 RYGFNDLE-EQGVNTQSWFHNPETCGEKRMSSSRSEHIFRRNNQWGMDSFSLSHEHSQHG 645

Query: 651 ISPPLVGQPTVRGSQDLVSSCKGSCRLFGFSLTEERHVANIEDNAAPVASPLNPRSSFLS 710
           +  PLV QP  +G QDLVSSCK SCRLFGF LTE+RHVAN +D++ P+AS LN   SF+ 
Sbjct: 646 LLQPLVAQPPCKGGQDLVSSCKSSCRLFGFQLTEDRHVANKDDSSIPMAS-LNA-GSFMP 703

Query: 711 HVGQQFHPKPPVMSKATGSNCTNVS 735
           H G+QFH KPP ++ A GS+CT VS
Sbjct: 704 HAGEQFHLKPPAITNAVGSSCTKVS 728

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359483904|ref|XP_002273401.2| PREDICTED: auxin response factor 3-like [Vitis vinifera]

 Score =  929 bits (2401), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 510/756 (67%), Positives = 581/756 (76%), Gaps = 23/756 (3%)

Query: 1   MVGLIDLNTTEDDENPSSGSLSPSSSSASALSASGFALAPAPASASASASGVSLELWHAC 60
           MV +IDLNT +DDE PSSGS S SSSSASA +++         S  ++AS V LELWHAC
Sbjct: 1   MVAMIDLNTVDDDETPSSGSSSSSSSSASASAST------VCGSLLSAASSVCLELWHAC 54

Query: 61  AGPLISLPKRGSVVVYFPQGHLEHVSDFSAAASAAYDLPPHPFCRVADVKLHAEAASDEV 120
           AGPLISLPK+GS+VVYFPQGHLE +SD+ A A   YDLPPH FCRV DVKLHAE  +DEV
Sbjct: 55  AGPLISLPKKGSLVVYFPQGHLEQLSDYPAVA---YDLPPHVFCRVVDVKLHAEVVTDEV 111

Query: 121 YAQVSLVPD-ELIEQKVREGKIE--DGDEDSVEVVAKSSTPHMFCKTLTASDTSTHGGFS 177
           YAQVSLVP+ + I+QK++EG+IE   G+E+ +E   KS TPHMFCKTLTASDTSTHGGFS
Sbjct: 112 YAQVSLVPETKQIKQKLQEGEIEADGGEEEDIEGSIKSMTPHMFCKTLTASDTSTHGGFS 171

Query: 178 VPRRAAEDCFPPLDYSQQRPSQELVAKDLHGLEWRFRHIYRGQPRRHLLTTGWSAFVNKK 237
           VPRRAAEDCFPPLDY QQRPSQELVAKDLHG EWRFRHIYRGQPRRHLLTTGWSAFVNKK
Sbjct: 172 VPRRAAEDCFPPLDYKQQRPSQELVAKDLHGFEWRFRHIYRGQPRRHLLTTGWSAFVNKK 231

Query: 238 KLVSGDAVLFLRGEDGELRLGIRRAPHVKSGATFPSFCSQQSSPNSVTEVVDAIARKRAF 297
           KLVSGDAVLFLRG DGELRLGIRRA  +K  + FP+ CSQQ + N++T VV+AI+ +  F
Sbjct: 232 KLVSGDAVLFLRGGDGELRLGIRRAAQIKGSSPFPALCSQQLNLNTLTAVVNAISTRSVF 291

Query: 298 SISYNPRASASEFIIPVNKFLKSLDHSFAVGMRFKMRFETDDAAERRYTGVIMGVGDVDP 357
           +I YNPRAS+SEFIIP+ KF KS+DHSF+ GMRFKMR ET+DAAERRYTG+I G+ D+DP
Sbjct: 292 NICYNPRASSSEFIIPLRKFSKSIDHSFSAGMRFKMRVETEDAAERRYTGLITGISDMDP 351

Query: 358 VRWPGSKWRCLLVRWDDVESNRHTRVSPWEIEPSGSVCGSNNLITSGLKRTRIGLPSGKP 417
           VRWPGSKWRCLLVRWDD+E+NRH RVSPWEIE SGS+ GS +L   G KRTRIGLP  +P
Sbjct: 352 VRWPGSKWRCLLVRWDDIEANRHNRVSPWEIELSGSLSGSGSLTVPGSKRTRIGLPGTRP 411

Query: 418 EFPVPDGIGVTDFGESLRFQKVLQGQEILGFNTLYDGGDCQNLHPSEVRRGILGSNGSGI 477
           +F VP+G+GV+DFGES RFQKVLQGQEI GFNT YDG D Q+ HPSE+ R   GS+ SGI
Sbjct: 412 DFSVPNGMGVSDFGESSRFQKVLQGQEIFGFNTPYDGVDTQDHHPSEI-RCFPGSSCSGI 470

Query: 478 AAIGDGSRNLQVKSDISYKGIGIGFGESFRFHKVLQGQEIFPKSPYGRAPTNNEARGIGS 537
           AAIG+G RN    SDISYK  GIGFGESFRFHKVLQGQE FP  P GRA + N+A   GS
Sbjct: 471 AAIGNGVRNPLGNSDISYK--GIGFGESFRFHKVLQGQETFPSPPCGRALSANQAHENGS 528

Query: 538 LGISDGVLVSGSRNRWSAVVPGYNTHTSPSAPPVQVSSPSSVLMFQLASNPISNYNPPYS 597
            GI DGV V  SRN W A+V GYN HT  S P VQVSSPSSVLMFQ AS    N    +S
Sbjct: 529 FGIFDGVQVPTSRNGWPALVQGYNAHTHLSTPSVQVSSPSSVLMFQQASTAAPNIYSMHS 588

Query: 598 LNDQEKEQRVNCQSFFHNSEIYGGKHASSSFLDHSFRGGDQEVMDSIGQSNEH----ISP 653
            N+QEKEQ ++ +S F   E+YG K  + S  + S RGG Q  M+  G  NEH    +  
Sbjct: 589 ANNQEKEQEISNRSSFDIPEVYGEK-LTPSRCELSVRGGGQGGMNFFGLLNEHNQLAVPH 647

Query: 654 PLVGQPTVRGSQDLVSSCKGSCRLFGFSLTEERHVANIEDNAAPVASPLNPRSSFLSHVG 713
           PLV Q   RGSQDLV +CK SCRLFGFSLTEER + N  DN  PV S L P +SFL    
Sbjct: 648 PLVTQSAFRGSQDLVPTCKSSCRLFGFSLTEERSIGNKVDNPTPVTSSLIPGTSFLP--- 704

Query: 714 QQFHPKPPVMSKATGSNCTNVSNHCAVRDMLFDIAL 749
           QQ H +PPVM+KA GSNCT VS+  AVRDMLFDIAL
Sbjct: 705 QQLHSEPPVMTKAIGSNCTKVSDFYAVRDMLFDIAL 740

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297740441|emb|CBI30623.3| unnamed protein product [Vitis vinifera]

 Score =  892 bits (2304), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 492/748 (65%), Positives = 560/748 (74%), Gaps = 49/748 (6%)

Query: 4   LIDLNTTEDDENPSSGSLSPSSSSASALSASGFALAPAPASASASASGVSLELWHACAGP 63
           +IDLNT +DDE PSSGS S SSSSASA +++         S  ++AS V LELWHACAGP
Sbjct: 1   MIDLNTVDDDETPSSGSSSSSSSSASASAST------VCGSLLSAASSVCLELWHACAGP 54

Query: 64  LISLPKRGSVVVYFPQGHLEHVSDFSAAASAAYDLPPHPFCRVADVKLHAEAASDEVYAQ 123
           LISLPK+GS+VVYFPQGHLE +SD+ A A   YDLPPH FCRV DVKLHAE  +DEVYAQ
Sbjct: 55  LISLPKKGSLVVYFPQGHLEQLSDYPAVA---YDLPPHVFCRVVDVKLHAEVVTDEVYAQ 111

Query: 124 VSLVPDELIEQKVREGKIE--DGDEDSVEVVAKSSTPHMFCKTLTASDTSTHGGFSVPRR 181
           VSLVP+  I+QK++EG+IE   G+E+ +E   KS TPHMFCKTLTASDTSTHGGFSVPRR
Sbjct: 112 VSLVPETKIKQKLQEGEIEADGGEEEDIEGSIKSMTPHMFCKTLTASDTSTHGGFSVPRR 171

Query: 182 AAEDCFPPLDYSQQRPSQELVAKDLHGLEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVS 241
           AAEDCFPPLDY QQRPSQELVAKDLHG EWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVS
Sbjct: 172 AAEDCFPPLDYKQQRPSQELVAKDLHGFEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVS 231

Query: 242 GDAVLFLRGEDGELRLGIRRAPHVKSGATFPSFCSQQSSPNSVTEVVDAIARKRAFSISY 301
           GDAVLFLRG DGELRLGIRRA  +K  + FP+ CSQQ + N++T VV+AI+ +  F+I Y
Sbjct: 232 GDAVLFLRGGDGELRLGIRRAAQIKGSSPFPALCSQQLNLNTLTAVVNAISTRSVFNICY 291

Query: 302 NPRASASEFIIPVNKFLKSLDHSFAVGMRFKMRFETDDAAERRYTGVIMGVGDVDPVRWP 361
           NPRAS+SEFIIP+ KF KS+DHSF+ GMRFKMR ET+DAAERRYTG+I G+ D+DPVRWP
Sbjct: 292 NPRASSSEFIIPLRKFSKSIDHSFSAGMRFKMRVETEDAAERRYTGLITGISDMDPVRWP 351

Query: 362 GSKWRCLLVRWDDVESNRHTRVSPWEIEPSGSVCGSNNLITSGLKRTRIGLPSGKPEFPV 421
           GSKWRCLLVRWDD+E+NRH RVSPWEIE SGS+ GS +L   G KRTRIGLP  +P+F V
Sbjct: 352 GSKWRCLLVRWDDIEANRHNRVSPWEIELSGSLSGSGSLTVPGSKRTRIGLPGTRPDFSV 411

Query: 422 PDGIGVTDFGESLRFQKVLQGQEILGFNTLYDGGDCQNLHPSEVRRGILGSNGSGIAAIG 481
           P+G+GV+DFGES RFQKVLQGQEI GFNT YDG D Q+ HPSE+ R   GS+ SGIAAIG
Sbjct: 412 PNGMGVSDFGESSRFQKVLQGQEIFGFNTPYDGVDTQDHHPSEI-RCFPGSSCSGIAAIG 470

Query: 482 DGSRNLQVKSDISYKGIGIGFGESFRFHKVLQGQEIFPKSPYGRAPTNNEARGIGSLGIS 541
           +G RN    SDISYK  GIGFGESFRFHKVLQGQE FP  P GRA + N+A   GS GI 
Sbjct: 471 NGVRNPLGNSDISYK--GIGFGESFRFHKVLQGQETFPSPPCGRALSANQAHENGSFGIF 528

Query: 542 DGVLVSGSRNRWSAVVPGYNTHTSPSAPPVQVSSPSSVLMFQLASNPISNYNPPYSLNDQ 601
           DGV V  SRN W A+V GYN HT  S P VQVSSPSSVLMFQ AS    N    +S N+Q
Sbjct: 529 DGVQVPTSRNGWPALVQGYNAHTHLSTPSVQVSSPSSVLMFQQASTAAPNIYSMHSANNQ 588

Query: 602 EKEQRVNCQSFFHNSEIYGGKHASSSFLDHSFRGGDQEVMDSIGQSNEHISPPLVGQPTV 661
           EKEQ ++ +S F   E+YG K  + S  + S RGG                         
Sbjct: 589 EKEQEISNRSSFDIPEVYGEK-LTPSRCELSVRGG------------------------- 622

Query: 662 RGSQDLVSSCKGSCRLFGFSLTEERHVANIEDNAAPVASPLNPRSSFLSHVGQQFHPKPP 721
                 V +CK SCRLFGFSLTEER + N  DN  PV S L P +SFL    QQ H +PP
Sbjct: 623 ------VPTCKSSCRLFGFSLTEERSIGNKVDNPTPVTSSLIPGTSFLP---QQLHSEPP 673

Query: 722 VMSKATGSNCTNVSNHCAVRDMLFDIAL 749
           VM+KA GSNCT VS+  AVRDMLFDIAL
Sbjct: 674 VMTKAIGSNCTKVSDFYAVRDMLFDIAL 701

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147770011|emb|CAN65414.1| hypothetical protein VITISV_009739 [Vitis vinifera]

 Score =  858 bits (2216), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 484/769 (62%), Positives = 553/769 (71%), Gaps = 72/769 (9%)

Query: 1   MVGLIDLNTTEDDENPSSGSLSPSSSSASALSASGFALAPAPASASASASGVSLELWHAC 60
           MV +IDLNT +DDE PSSGS S SSSSASA +++         S  ++AS V LELWHAC
Sbjct: 1   MVAMIDLNTVDDDETPSSGSSSSSSSSASASAST------VCGSLLSAASSVCLELWHAC 54

Query: 61  AGPLISLPKRGSVVVYFPQGHLEHVSDFSAAASAAYDLPPHPFCRVADVKLHAEAASDEV 120
           AGPLISLPK+GS+VVYFPQGHLE +SD+ A A   YDLPPH FCRV DVKLHAE  +DEV
Sbjct: 55  AGPLISLPKKGSLVVYFPQGHLEQLSDYPAVA---YDLPPHVFCRVVDVKLHAEVVTDEV 111

Query: 121 YAQVSLVPDELIEQKVREGKIE--DGDEDSVEVVAKSSTPHMFCKTLTASDTSTHGGFSV 178
           YAQVSLVP+  I+QK++EG+IE   G+E+ +E   KS TPHMFCKTLTASDTSTHGGFSV
Sbjct: 112 YAQVSLVPETKIKQKLQEGEIEADGGEEEDIEGSIKSMTPHMFCKTLTASDTSTHGGFSV 171

Query: 179 PRRAAEDCFPPLDYSQQRPSQELVAKDLHGLEWRFRHIYRGQPRRHLLTTGWSAFVNKKK 238
           PRRAAEDCFPPLDY QQRPSQELVAKDLHG EWRFRHIYRGQPRRHLLTTGWSAFVNKKK
Sbjct: 172 PRRAAEDCFPPLDYKQQRPSQELVAKDLHGFEWRFRHIYRGQPRRHLLTTGWSAFVNKKK 231

Query: 239 LVSGDAVLFLRGEDGELRLGIRRAPHVKSGATFPSFCSQQSSPNSVTEVVDAIARKRAFS 298
           LVSGDAVLFLRG DGELRLGIRRA  +K  + FP+ CSQQ + N++T VV+AI+ +  F+
Sbjct: 232 LVSGDAVLFLRGGDGELRLGIRRAAQIKGSSPFPALCSQQLNLNTLTAVVNAISTRSVFN 291

Query: 299 ISYNPRASASEFIIPVNKFLKSLDHSFAVGMRFKMRFETDDAAERRYTGVIMGVGDVDPV 358
           I YNPRAS+SEFIIP+ KF KS+DHSF+ GMRFKMR ET+DAAERRYTG+I G+ D+DPV
Sbjct: 292 ICYNPRASSSEFIIPLRKFSKSIDHSFSAGMRFKMRVETEDAAERRYTGLITGISDMDPV 351

Query: 359 RWPGSKWRCLL------------------------------VRWDDVESNRHTRVSPWEI 388
           RWPGSKWRCLL                              VRWDD+E+NRH RVSPWEI
Sbjct: 352 RWPGSKWRCLLLHHSHGSECVLLPCLPYYSDSATFFDLSLQVRWDDIEANRHNRVSPWEI 411

Query: 389 EPSGSVCGSNNLITSGLKRTRIGLPSGKPEFPVPDGIGVTDFGESLRFQKVLQGQEILGF 448
           E SGS+ GS +L   G KRTRIGLP  +P+F VP+G+GV+DFGES RFQKVLQGQEI GF
Sbjct: 412 ELSGSLSGSGSLTVPGSKRTRIGLPGTRPDFSVPNGMGVSDFGESSRFQKVLQGQEIFGF 471

Query: 449 NTLYDGGDCQNLHPSEVRRGILGSNGSGIAAIGDGSRNLQVKSDISYKGIGIGFGESFRF 508
           NT YDG D Q+ HPSE+ R   GS+ S IAAIG+G RN    SDISYK  GIGFGESFRF
Sbjct: 472 NTPYDGVDTQDHHPSEI-RCFPGSSCSRIAAIGNGVRNPLGNSDISYK--GIGFGESFRF 528

Query: 509 HKVLQGQEIFPKSPYGRAPTNNEARGIGSLGISDGVLVSGSRNRWSAVVPGYNTHTSPSA 568
           HKVLQGQE FP  P GRA + N+A   GS GI DGV V  SRN W A+V GYN HT  S 
Sbjct: 529 HKVLQGQETFPSPPCGRALSANQAHENGSFGIFDGVQVPTSRNGWPALVQGYNAHTHLST 588

Query: 569 PPVQVSSPSSVLMFQLASNPISNYNPPYSLNDQEKEQRVNCQSFFHNSEIYGGKHASSSF 628
           P VQVSSPSSVLM                     + + ++ +S F   E+YG K  + S 
Sbjct: 589 PSVQVSSPSSVLM--------------------RRSKXLSNRSSFDIPEVYGEK-LTPSR 627

Query: 629 LDHSFRGGDQEVMDSIGQSNEH----ISPPLVGQPTVRGSQDLVSSCKGSCRLFGFSLTE 684
            + S RGG Q  M+  G  NEH    +  PLV Q   RGSQDLV +CK SCRLFGFSLTE
Sbjct: 628 CELSVRGGGQGGMNFFGLLNEHNQLAVPHPLVTQSAFRGSQDLVPTCKSSCRLFGFSLTE 687

Query: 685 ERHVANIEDNAAPVASPLNPRSSFLSHVGQQFHPKPPVMSKATGSNCTN 733
           ER + N  DN  PV S L P +SFL    QQ H +PPVM+KA GSNCT 
Sbjct: 688 ERSIGNKVDNPTPVTSSLIPGTSFLP---QQLHSEPPVMTKAIGSNCTK 733

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224116336|ref|XP_002331957.1| predicted protein [Populus trichocarpa] gi|222874734|gb|EEF11865.1| predicted protein [Populus trichocarpa]

 Score =  855 bits (2208), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 464/725 (64%), Positives = 531/725 (73%), Gaps = 24/725 (3%)

Query: 1   MVGLIDLNTTEDDENPSSGSLSPSSSSASALSASGFALAPAPASASASASGVSLELWHAC 60
           MVG+IDLNT E+DE       +PS  S S+ S+S  A A + + + +S S V LELWHAC
Sbjct: 1   MVGMIDLNTIEEDET------TPSCGSLSSPSSSSAASALSASGSGSSTSSVCLELWHAC 54

Query: 61  AGPLISLPKRGSVVVYFPQGHLEHVSDFSAAASAAYDLPPHPFCRVADVKLHAEAASDEV 120
           AGPLISLPKRGSVVVYFPQGHLE + D   A    YDLP H FCRV DVKLHAEAASDEV
Sbjct: 55  AGPLISLPKRGSVVVYFPQGHLEQLPDLPLAV---YDLPSHVFCRVVDVKLHAEAASDEV 111

Query: 121 YAQVSLVPD-ELIEQKVREGKIEDGDEDSVE-VVAKSSTPHMFCKTLTASDTSTHGGFSV 178
           YAQVSLVP+ E IEQK+REG  E   E+       K +TPHMFCKTLTASDTSTHGGFSV
Sbjct: 112 YAQVSLVPESEEIEQKLREGIFEGDGEEEDGEATVKMTTPHMFCKTLTASDTSTHGGFSV 171

Query: 179 PRRAAEDCFPPLDYSQQRPSQELVAKDLHGLEWRFRHIYRGQPRRHLLTTGWSAFVNKKK 238
           PRRAAEDCFPPLDY+QQRPSQELVAKDLHG EW+FRHIYRGQPRRHLLTTGWSAFVNKKK
Sbjct: 172 PRRAAEDCFPPLDYTQQRPSQELVAKDLHGSEWKFRHIYRGQPRRHLLTTGWSAFVNKKK 231

Query: 239 LVSGDAVLFLRGEDGELRLGIRRAPHVKSGATFPSFCSQQSSPNSVTEVVDAIARKRAFS 298
           LVSGDAVLFLRGEDGELRLG+RRA  VK G TFP+  + Q +  S  +V +AI+ +  F 
Sbjct: 232 LVSGDAVLFLRGEDGELRLGVRRAAQVKCGPTFPAQWNHQLNQISPGDVANAISTRSFFH 291

Query: 299 ISYNPRASASEFIIPVNKFLKSLDHSFAVGMRFKMRFETDDAAERRYTGVIMGVGDVDPV 358
           I YNPRAS+SEFIIP NKFLKSLD SF+ GMRFKMRFET+DAAERRYTG+I GV ++DP 
Sbjct: 292 IYYNPRASSSEFIIPFNKFLKSLDQSFSSGMRFKMRFETEDAAERRYTGIITGVSELDPA 351

Query: 359 RWPGSKWRCLLVRWDDVESNRHTRVSPWEIEP--SGSVCGSNNLITSGLKRTRIGLPSGK 416
           RWPGSKW+CLLVRWDD E+NR +RVSPWE+EP  SGS+  SNN +  GLKR+R GLPS K
Sbjct: 352 RWPGSKWKCLLVRWDDREANRLSRVSPWEVEPSGSGSISSSNNFMAPGLKRSRSGLPSSK 411

Query: 417 PEFPVPDGIGVTDFGESLRFQKVLQGQEILGFNTLYDGGDCQNLHPSEVRRGILGSNGSG 476
            EFP+PDGIG   F ES R Q+VLQGQEI+ FN LYDG D QN HPSE+R    G + SG
Sbjct: 412 AEFPIPDGIGAPGFRESSRSQEVLQGQEIMSFNALYDGVDGQNQHPSEIRSCFPGYHSSG 471

Query: 477 IAAIGDGSRNLQVKSDISYKGIGIGFGESFRFHKVLQGQEIFPKSPYGRAPTNNEARGIG 536
           IAA+G G R+    S+ SYK  GIGF ES+RFHKV QGQEIFP SPYGR P  NEAR   
Sbjct: 472 IAALGSGIRDSIATSNNSYK--GIGFNESYRFHKVFQGQEIFPSSPYGRIPNANEARENC 529

Query: 537 SLGISDGVLVSGSRNRWSAVVPGYNTHTSPSAPPVQVSSPSSVLMFQLASNPISNYNPPY 596
           SLG SDGV  S SRN WS ++ GYNT      PP QVSSPSSVLMFQ ASNP+   +  +
Sbjct: 530 SLGFSDGVQRSSSRNGWSTLMQGYNTQIR---PPAQVSSPSSVLMFQHASNPVPKRSSNF 586

Query: 597 SLNDQEKEQRVNCQSFFHNSEIYGGKHASSSFLDHSFRGGDQEVMDSIGQSNEH----IS 652
           + ND   +Q    +S+F   E+ GG    S+  + S +   Q      G S+EH    +S
Sbjct: 587 NFNDH-VQQTATTRSWFCGPEMQGGNFKLSAHSEPSVKRDGQWSNSPFGLSHEHLQHGVS 645

Query: 653 PPLVGQPTVRGSQDLVSSCKGSCRLFGFSLTEERHVANIEDNAAPVASPLNPRSSFLSHV 712
            P+V Q   RGSQDLV SCK SCRLFGFSLTE++ + N EDN   + SPLNP SSFL   
Sbjct: 646 QPIVAQSAFRGSQDLV-SCKSSCRLFGFSLTEDKCLVNKEDNMTLITSPLNPGSSFLPRA 704

Query: 713 GQQFH 717
           G+ FH
Sbjct: 705 GEHFH 709

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356549269|ref|XP_003543018.1| PREDICTED: auxin response factor 3-like [Glycine max]

 Score =  845 bits (2183), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 454/744 (61%), Positives = 527/744 (70%), Gaps = 25/744 (3%)

Query: 2   VGLIDLNTTEDDE------NPSSGSLSPSSSSASALSASGFALAPAPASASASASGVSLE 55
           +GLIDLNTTEDDE      +  +   S SS S  + SAS   + P P S       V LE
Sbjct: 1   MGLIDLNTTEDDEAAPLSASSPASYSSSSSHSGISTSASTLVVPPTPPS-------VCLE 53

Query: 56  LWHACAGPLISLPKRGSVVVYFPQGHLEHVSDFSAAASAAYDLPPHPFCRVADVKLHAEA 115
           LWHACAGPLISLPK+GSVVVY PQGH EHV DF   A   YD+PPH FCRV DVKLHAE 
Sbjct: 54  LWHACAGPLISLPKKGSVVVYLPQGHFEHVQDFPVTA---YDIPPHVFCRVLDVKLHAEE 110

Query: 116 ASDEVYAQVSLVPD-ELIEQKVREGKI-EDGDEDSVEVVAKSSTPHMFCKTLTASDTSTH 173
            SDEVY QV LVP+ E +EQ +REG+I  DG+E+  E + KS+TPHMFCKTLTASDTSTH
Sbjct: 111 GSDEVYCQVLLVPESEQVEQSLREGEIVADGEEEDTEAIVKSTTPHMFCKTLTASDTSTH 170

Query: 174 GGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGLEWRFRHIYRGQPRRHLLTTGWSAF 233
           GGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGLEWRFRHIYRGQPRRHLLTTGWSAF
Sbjct: 171 GGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGLEWRFRHIYRGQPRRHLLTTGWSAF 230

Query: 234 VNKKKLVSGDAVLFLRGEDGELRLGIRRAPHVKSGATFPSFCSQQSSPNSVTEVVDAIAR 293
           VNKKKLVSGDAVLFLRG+DGELRLGIRRA  +KS  +F     QQ +P ++  VV+A++ 
Sbjct: 231 VNKKKLVSGDAVLFLRGDDGELRLGIRRAAQLKSAGSFAVPSGQQLNPATLKGVVNALST 290

Query: 294 KRAFSISYNPRASASEFIIPVNKFLKSLDHSFAVGMRFKMRFETDDAAERRYTGVIMGVG 353
           + AFS+ YNPR S+SEFIIPV+KFLKSLD S++VGMRF+MRFET+DAAERR TG+I G+ 
Sbjct: 291 RCAFSVCYNPRFSSSEFIIPVHKFLKSLDCSYSVGMRFRMRFETEDAAERRCTGLIAGIS 350

Query: 354 DVDPVRWPGSKWRCLLVRWDDVESNRHTRVSPWEIEPSGSVCGSNNLITSGLKRTRIGLP 413
           DVDPVRW GSKWRCLLVRWDD+E+ R  RVSPWEIEPSGS   S+NL+++GLKRTRIG+ 
Sbjct: 351 DVDPVRWLGSKWRCLLVRWDDIEAARRNRVSPWEIEPSGSASNSSNLMSAGLKRTRIGMT 410

Query: 414 SGKPEFPVPDGIGVTDFGESLRFQKVLQGQEILGFNTLYDGGDCQNLHPSEVRRGILGSN 473
           S K EFP PDGIG +DFGESLRF+KVLQGQEILG NT +DG + Q+    E+ R   GSN
Sbjct: 411 SVKLEFPTPDGIGASDFGESLRFRKVLQGQEILGVNTPFDGINAQSPRLYELGRCYPGSN 470

Query: 474 GSGIAAIGDGSRNLQVKSDISYKGIGIGFGESFRFHKVLQGQEIFPKSPYGRAPTNNEAR 533
            SGI   G+  R     SD S    GIGF ESFRF KVLQGQEI P  PYGR  +  EAR
Sbjct: 471 CSGIPPTGNNIRMPHPASDFSCN--GIGFSESFRFQKVLQGQEILPSQPYGRVLSIEEAR 528

Query: 534 GIGSLGISDGVLVSGSRNRWSAVVPGYNTHTSPSAPPVQVSSPSSVLMFQLASNPISNYN 593
             G  G+ DG  +  +RN WSA +     +   S  P QVSSPSSVLMFQ A NP+SN +
Sbjct: 529 ANGCYGLYDGCQLLNTRNGWSAQMHDNAPYLHASVTPAQVSSPSSVLMFQQAVNPVSNCD 588

Query: 594 PPYSLNDQEKEQRVNCQSFFHNSEIYGGKHASSSFLDHSFRGGDQEVMDSIGQSNEH--- 650
              +  D+E E RV+ Q  +  SE+ G   ASS F D        E   S+G  + H   
Sbjct: 589 YNKNKRDKEMEGRVHYQGLY-TSEVKGRTFASSPFDDPILSTLAPEGASSLGMFDVHNQL 647

Query: 651 -ISPPLVGQPTVRGSQDLVSSCKGSCRLFGFSLTEERHVANIEDNAAPVASPLNPRSSFL 709
             S P      +R SQ+LVSSCK SCRLFGFSLTE+ H+A  E +A+ +  PL+   SF 
Sbjct: 648 GSSRPHESVSALRSSQELVSSCKSSCRLFGFSLTEDTHLAKKEASASTITLPLSSGPSFT 707

Query: 710 SHVGQQFHPKPPVMSKATGSNCTN 733
             V  +FHP   + SK  GSNCT 
Sbjct: 708 RLVEDEFHPGHSLPSKGVGSNCTK 731

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224077042|ref|XP_002305105.1| predicted protein [Populus trichocarpa] gi|222848069|gb|EEE85616.1| predicted protein [Populus trichocarpa]

 Score =  835 bits (2158), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 462/747 (61%), Positives = 532/747 (71%), Gaps = 65/747 (8%)

Query: 1   MVGLIDLNTTEDDENPSSGSLSPSSSSASALSASGFALAPAPASASASASGVSLELWHAC 60
           MVG+IDLNTTE+DE   S     S SS+SA SA       + + + +  S V LELWHAC
Sbjct: 1   MVGMIDLNTTEEDETTPSSGSLSSPSSSSAASAL------SASGSGSGTSPVCLELWHAC 54

Query: 61  AGPLISLPKRGSVVVYFPQGHLEHVSDFSAAASAAYDLPPHPFCRVADVKLHAEAASDEV 120
           AGPLISLPKRGS+VVY PQGHLE + D        YDLPPH FCRV DVKLHAEAASD+V
Sbjct: 55  AGPLISLPKRGSIVVYVPQGHLEQLPDLPLGI---YDLPPHVFCRVVDVKLHAEAASDDV 111

Query: 121 YAQVSLVPD-ELIEQKVREGKIEDGDEDSVE-VVAKSSTPHMFCKTLTASDTSTHGGFSV 178
           YAQVSLVP+ E IEQK+REG  E   E+       K++TPHMFCKTLTASDTSTHGGFSV
Sbjct: 112 YAQVSLVPESEEIEQKLREGVFEGDGEEEDVEATVKTTTPHMFCKTLTASDTSTHGGFSV 171

Query: 179 PRRAAEDCFPPLDYSQQRPSQELVAKDLHGLEWRFRHIYRGQPRRHLLTTGWSAFVNKKK 238
           PRRAAEDCFPPLDY+QQRPSQELVAKDLHG EW+FRHIYRGQPRRHLLTTGWSAFVNKKK
Sbjct: 172 PRRAAEDCFPPLDYTQQRPSQELVAKDLHGSEWKFRHIYRGQPRRHLLTTGWSAFVNKKK 231

Query: 239 LVSGDAVLFLRGEDGELRLGIRRAPHVKSGATFPSFCSQQSSPNSVTEVVDAIARKRAFS 298
           LVSGDAVLFLRGEDGELRLG+RRA  VK G TFP+  +QQ + +S+ +V +AI+ + AF 
Sbjct: 232 LVSGDAVLFLRGEDGELRLGVRRAAQVKCGPTFPALWNQQLNQSSLADVANAISMRSAFR 291

Query: 299 ISYNPRASASEFIIPVNKFLKSLDHSFAVGMRFKMRFETDDAAERRYTGVIMGVGDVDPV 358
           I YNPRAS+SEFIIP NKFLKSLD SF+ GMR KMRFET+DAAERRYTG+I G+ ++DP 
Sbjct: 292 IYYNPRASSSEFIIPFNKFLKSLDQSFSAGMRVKMRFETEDAAERRYTGLITGISELDPT 351

Query: 359 RWPGSKWRCLLVRWDDVESNRHTRVSPWEIEP--------SGSVCGSNNLITSGLKRTRI 410
           RWPGSKW+CLLVRWDD E+NRH+RVSPWE+EP        SGS+  SNN +  GLKR+R 
Sbjct: 352 RWPGSKWKCLLVRWDDTEANRHSRVSPWEVEPSGSVSGSGSGSISSSNNSMAPGLKRSRS 411

Query: 411 GLPSGKPEFPVPDGIGVTDFGESLRFQKVLQGQEILGFNTLYDGGDCQNLHPSEVRRGIL 470
           GLPS K EFP+PDGIG +DF  S RFQ+VLQGQEI+                   R GI 
Sbjct: 412 GLPSLKAEFPIPDGIGASDFRVSSRFQEVLQGQEIM-------------------RSGIR 452

Query: 471 GSNGSGIAAIGDGSRNLQVKSDISYKGIGIGFGESFRFHKVLQGQEIFPKSPYGRAPTNN 530
           GS  +               S+ S+K  GIGF ES+RFHKVLQGQEIFP+SPY R P  N
Sbjct: 453 GSIPT---------------SENSFK--GIGFNESYRFHKVLQGQEIFPRSPYRRIPNAN 495

Query: 531 EARGIGSLGISDGVLVSGSRNRWSAVVPGYNTHTSPSAPPVQVSSPSSVLMFQLASNPIS 590
           +AR    LG+SDGV  S SRN WS ++ GYNT      PP QVSSPSSVLMFQ ASN +S
Sbjct: 496 KARENCGLGLSDGVQRSSSRNGWSTMMQGYNTQMR---PPTQVSSPSSVLMFQHASNQVS 552

Query: 591 NYNPPYSLNDQEKEQRVNCQSFFHNSEIYGGKHASSSFLDHSFRGGDQEVMDSIGQSNEH 650
           N    ++ ND E EQ  N QS+F+  E +GGK   SS  D   RG  Q   +    S+EH
Sbjct: 553 NPTSIFNSNDHE-EQTTNTQSWFY-PETHGGKFKLSSHSDPGLRGDSQCSTNPYVLSHEH 610

Query: 651 ----ISPPLVGQPTVRGSQDLVSSCKGSCRLFGFSLTEERHVANIEDNAAPVASPLNPRS 706
               IS P+V Q   R SQD+V  CK SCRLFGFSLTE+RHV N EDN A + SPLNP S
Sbjct: 611 LQHGISQPVVAQSAFRSSQDMV-LCKSSCRLFGFSLTEDRHVVNKEDNIASITSPLNPES 669

Query: 707 SFLSHVGQQFHPKPPVMSKATGSNCTN 733
           SFL  VG+Q HPKPP ++ A GS+CT 
Sbjct: 670 SFLPRVGEQLHPKPPAINNAVGSSCTK 696

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302398565|gb|ADL36577.1| ARF domain class transcription factor [Malus x domestica]

 Score =  830 bits (2145), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 458/738 (62%), Positives = 551/738 (74%), Gaps = 48/738 (6%)

Query: 1   MVGLIDLNT-TEDDENPSSGSLSPSSSSASALSASGFALAPAPASASASASGVSLELWHA 59
           M GLIDLN+ TED+E PSS S S +SS + AL                S++ V LELWHA
Sbjct: 1   MAGLIDLNSATEDEETPSSVSSSSASSVSDAL---------------GSSASVCLELWHA 45

Query: 60  CAGPLISLPKRGSVVVYFPQGHLEHVSDFSAAASAAYDLPPHPFCRVADVKLHAEAASDE 119
           CAGPLISLPK+G+VVVY PQGHLE VSDF    ++AYDLPPH FCRV DVKLHAE+ +D+
Sbjct: 46  CAGPLISLPKKGTVVVYLPQGHLEQVSDF---PTSAYDLPPHLFCRVVDVKLHAESGTDD 102

Query: 120 VYAQVSLVPD-ELIEQKVREGKIEDGDEDSVEVVAKSSTPHMFCKTLTASDTSTHGGFSV 178
           V+AQVSLVP+ E IE ++ EG+ +   E+ VE + KS+TPHMFCKTLTASDTSTHGGFSV
Sbjct: 103 VFAQVSLVPESEEIEHRLLEGETDADGEEDVEAMGKSTTPHMFCKTLTASDTSTHGGFSV 162

Query: 179 PRRAAEDCFPPLDYSQQRPSQELVAKDLHGLEWRFRHIYRGQPRRHLLTTGWSAFVNKKK 238
           PRRAAEDCFPPLDY+QQRPSQELVAKDLHGLEWRFRHIYRGQPRRHLLTTGWSAFVNKKK
Sbjct: 163 PRRAAEDCFPPLDYTQQRPSQELVAKDLHGLEWRFRHIYRGQPRRHLLTTGWSAFVNKKK 222

Query: 239 LVSGDAVLFLRGEDGELRLGIRRAPHVKSGATFPSFCSQQSSPNSVTEVVDAIARKRAFS 298
           LVSGDAVLFLRG+DGELRLGIRRA  VKS AT P+ CSQQ + ++VT+VV+A++ K AF+
Sbjct: 223 LVSGDAVLFLRGDDGELRLGIRRAAQVKSSATCPTLCSQQLNYSTVTDVVNAVSTKNAFN 282

Query: 299 ISYNPRASASEFIIPVNKFLKSLDHSFAVGMRFKMRFETDDAAERRYTGVIMGVGDVDPV 358
           + YNPRAS+SEFIIP  KFL+SLDH F+ GMRFKMRFET+DAAERRYTG+I G+G +DP+
Sbjct: 283 VYYNPRASSSEFIIPSRKFLRSLDHCFSAGMRFKMRFETEDAAERRYTGLITGIGALDPI 342

Query: 359 RWPGSKWRCLLVRWDDVESNRHTRVSPWEIEPSGSVCGSNNLITSGLKRTRIGLPSGKPE 418
           RWPGSKW+CL+VRWDD+++++H RVSPWEIEPSGSV  S++L+ +GLKR+RIGL + KPE
Sbjct: 343 RWPGSKWKCLVVRWDDIDTSKHGRVSPWEIEPSGSVSSSHSLMGTGLKRSRIGLSATKPE 402

Query: 419 FPVPDGIGVTDFGESLRFQKVLQGQEILGFNTLYDGGDCQNLHPSEVRRGILGSNGSGIA 478
           FPVP+G G +DFGESLRFQKVLQGQEI GF+T + G   QN HPSE RR   GS GSGIA
Sbjct: 403 FPVPNGNGASDFGESLRFQKVLQGQEISGFDTPFSGLGVQNPHPSEARRVFQGSGGSGIA 462

Query: 479 AIGDGSRNLQVKSDISYKGIGIGFGESFRFHKVLQGQEIFPKSPYGRAPTNNEARGIGSL 538
           A  +G R   V S+I+ K  GIGFGES RFHKVLQGQEIFP SPYGRAP +N+A   G  
Sbjct: 463 AGSNGLRQSLVDSEIASK--GIGFGESLRFHKVLQGQEIFPSSPYGRAPASNKAHEYGGP 520

Query: 539 GISDGVLVSGSRNRWSAVVPGYNTHTSPSAPPVQVSSPSSVLMFQLASNPISNYNPPYSL 598
           G+ DG  V G RN WS ++   NT   PSA  VQVSSPSSVLMFQ A NP++ +N  Y+ 
Sbjct: 521 GVYDGFQVPGFRNGWSTMMQSNNTQVHPSATSVQVSSPSSVLMFQQAINPVTEFNSVYNG 580

Query: 599 NDQEKEQRVNCQSFFHNSEIYGGKHASSSFLDHSFRGGDQEVMDSIGQ---SNEHISPPL 655
           ++QE+ + ++   +   SE  GG+  SSSF + +F   D     S  Q   SN+    P+
Sbjct: 581 HNQEEHRVIHPTPYV--SEYDGGRKTSSSFGERNFSREDHGGTHSYNQHGISND----PV 634

Query: 656 VGQPTVRGSQDLVSSCKGSCRLFGFSLTEERHVANIEDNAAPVASPLNPRSSFLSHVGQQ 715
           + + T  GSQD +S  KGSCRLFGFSL+E++ V     + AP A             G +
Sbjct: 635 ISRSTFSGSQDSISPTKGSCRLFGFSLSEDKCVP----DQAPTA-------------GVR 677

Query: 716 FHPKPPVMSKATGSNCTN 733
           FH KPP+M+ A G  CT 
Sbjct: 678 FHSKPPLMTSAVGITCTK 695

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356521420|ref|XP_003529354.1| PREDICTED: auxin response factor 3-like [Glycine max]

 Score =  820 bits (2117), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 446/743 (60%), Positives = 525/743 (70%), Gaps = 51/743 (6%)

Query: 1   MVGLIDLNT-TEDDENPSSGSLSPSSSSASALSASGFALAPAPASASASASGVSLELWHA 59
           M GLIDLN  TEDDE PSSGS                            +S V LELWHA
Sbjct: 1   MAGLIDLNNATEDDEMPSSGS----------------------------SSTVCLELWHA 32

Query: 60  CAGPLISLPKRGSVVVYFPQGHLE-HVSDFSAAASAAYDLPPHPFCRVADVKLHAEAASD 118
           CAGPLISLPK+GSVVVYFPQGHLE H+ DF   ASA  ++P H FCRV DVKLHAE  SD
Sbjct: 33  CAGPLISLPKKGSVVVYFPQGHLEQHLHDFPLPASA--NIPSHVFCRVLDVKLHAEEGSD 90

Query: 119 EVYAQVSLVPD-ELIEQKVREGKIE-DGDEDSVEVVAKSSTPHMFCKTLTASDTSTHGGF 176
           EV+ QV LVP+ E + QK+REG+ + DG+E+  E V KS+TPHMFCKTLTASDTSTHGGF
Sbjct: 91  EVHCQVVLVPETEQVHQKLREGEFDADGEEEDAEAVMKSTTPHMFCKTLTASDTSTHGGF 150

Query: 177 SVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGLEWRFRHIYRGQPRRHLLTTGWSAFVNK 236
           SVPRRAAEDCFPPLDYSQQRPSQELVAKDLHG EWRFRHIYRGQPRRHLLTTGWSAFVNK
Sbjct: 151 SVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGQEWRFRHIYRGQPRRHLLTTGWSAFVNK 210

Query: 237 KKLVSGDAVLFLRGEDGELRLGIRRAPHVKSGATFPSFCSQQSSPNSVTEVVDAIARKRA 296
           KKLVSGDAVLFLRGEDGELRLGIRRA  +KSG+TF +   QQ SP S+ +VV+A++ + A
Sbjct: 211 KKLVSGDAVLFLRGEDGELRLGIRRAAQLKSGSTFSALSGQQLSPTSLMDVVNALSARCA 270

Query: 297 FSISYNPRASASEFIIPVNKFLKSLDHSFAVGMRFKMRFETDDAAERRYTGVIMGVGDVD 356
           FSI YNPR S SEFIIP+++FLKSLD+S++ GMRF+MRFET+DAAERR+TG+I+G+ DVD
Sbjct: 271 FSIHYNPRVSTSEFIIPIHRFLKSLDYSYSAGMRFRMRFETEDAAERRFTGLIVGIADVD 330

Query: 357 PVRWPGSKWRCLLVRWDDVESNRHTRVSPWEIEPSGSVCGSNNLITSGLKRTRIGLPSGK 416
           PVRWPGSKWRCL+VRWDD+E  RH RVSPWEIEPSGS   +NNL+++GLKRT+IGLPS K
Sbjct: 331 PVRWPGSKWRCLMVRWDDLEVTRHNRVSPWEIEPSGSASTANNLMSAGLKRTKIGLPSAK 390

Query: 417 PEFPVPDGIGVTDFGESLRFQKVLQGQEILGFNTLYDGGDCQNLHPSEVRRGILGSNGSG 476
            EFPV + IG +DFGESLRFQKVLQGQE+LG N  YD  + Q+   S++RR    SN   
Sbjct: 391 LEFPVSNAIGTSDFGESLRFQKVLQGQEMLGVNPTYDSINAQSHQVSDLRRCYPVSNYPR 450

Query: 477 IAAIGDGSRNLQVKSDISYKGIGIGFGESFRFHKVLQGQEIFPKSPYGRAPTNNEARGIG 536
           IAA G+     QV S++S    GIGF ESFRF KVLQGQEIFP  PYGRA + +EA G  
Sbjct: 451 IAATGNSIGIPQVSSNVSSN--GIGFSESFRFQKVLQGQEIFPSQPYGRALSVDEACGNS 508

Query: 537 SLGISDGVLVSGSRNRWSAVVPGYNTHTSPSAPPVQVSSPSSVLMFQLASNPISN--YNP 594
             G+ DG  V  SRN W + +   +++  P  P  QVSSPSSVLMFQ A N +SN  YN 
Sbjct: 509 RCGLFDGYQVMRSRNGWCSDMSNNSSNLHPPVPSGQVSSPSSVLMFQQAVNLVSNSDYNN 568

Query: 595 PYS-LNDQEKEQRVNCQSFFHNSEIYGGKHASSSFLDHSFRGGDQEVMDSIGQSNEH--- 650
             S +   +  QRV+     + S++ GGK  S+ + +    G  +E  +S G SN H   
Sbjct: 569 KISQVMGGKFHQRVS-----YASDVKGGKFVSTPY-EPLLCGLAKEGTNSFGLSNFHNQL 622

Query: 651 -ISPPLVGQPTVRGSQDLVSSCKGSCRLFGFSLTEERHVANIEDNAAPVASPLNPRSSFL 709
             S        +R +Q+LV SCK SCR+FGFSLTE   +AN E  AA  +S      SF 
Sbjct: 623 DSSRSHDSISVLRANQELVPSCKSSCRVFGFSLTEVAPIANKE--AADSSSVACSGPSFT 680

Query: 710 SHVGQQFHPKPPVMSKATGSNCT 732
            HV   FHP   + SKA  S CT
Sbjct: 681 RHVDDDFHPGHSLRSKAVASYCT 703

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356548656|ref|XP_003542716.1| PREDICTED: auxin response factor 3-like [Glycine max]

 Score =  819 bits (2116), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 449/744 (60%), Positives = 533/744 (71%), Gaps = 46/744 (6%)

Query: 1   MVGLIDLNT-TEDDENPSSGSLSPSSSSASALSASGFALAPAPASASASASGVSLELWHA 59
           M GLIDLN  TEDDE PSSG                       +S+S+S+S V LELWHA
Sbjct: 1   MAGLIDLNNATEDDETPSSG-----------------------SSSSSSSSTVCLELWHA 37

Query: 60  CAGPLISLPKRGSVVVYFPQGHLE-HVSDFSAAASAAYDLPPHPFCRVADVKLHAEAASD 118
           CAGP+ISLPK+GSVVVYFPQGHLE H+ DF   ASA  ++P H FCRV DVKLHAE  SD
Sbjct: 38  CAGPMISLPKKGSVVVYFPQGHLEQHLHDFPLPASA--NIPSHVFCRVLDVKLHAEEGSD 95

Query: 119 EVYAQVSLVPD-ELIEQKVREGKIE-DGDEDSVEVVAKSSTPHMFCKTLTASDTSTHGGF 176
           EVY QV LVP+ E ++QK+REG+ + DG+E+  E V KS+TPHMFCKTLTASDTSTHGGF
Sbjct: 96  EVYCQVVLVPESEQVQQKLREGEFDADGEEEDAEAVMKSTTPHMFCKTLTASDTSTHGGF 155

Query: 177 SVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGLEWRFRHIYRGQPRRHLLTTGWSAFVNK 236
           SVPRRAAEDCFPPLDYSQQRPSQELVAKDLHG EWRFRHIYRGQPRRHLLTTGWSAFVNK
Sbjct: 156 SVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGQEWRFRHIYRGQPRRHLLTTGWSAFVNK 215

Query: 237 KKLVSGDAVLFLRGEDGELRLGIRRAPHVKSGATFPSFCSQQSSPNSVTEVVDAIARKRA 296
           KKLVSGDAVLFLRGEDGELRLGIRRA  +KSG+TF +   QQ SP S+ +VV+A++ + A
Sbjct: 216 KKLVSGDAVLFLRGEDGELRLGIRRAAQLKSGSTFSALSGQQGSPTSLMDVVNALSARCA 275

Query: 297 FSISYNPRASASEFIIPVNKFLKSLDHSFAVGMRFKMRFETDDAAERRYTGVIMGVGDVD 356
           FSI YNPR S+SEFIIP+++F+KSLD+S++ GMRF+MRFET+DAAERR+TG+I+G+ DVD
Sbjct: 276 FSIHYNPRVSSSEFIIPIHRFVKSLDYSYSAGMRFRMRFETEDAAERRFTGLIVGIADVD 335

Query: 357 PVRWPGSKWRCLLVRWDDVESNRHTRVSPWEIEPSGSVCGSNNLITSGLKRTRIGLPSGK 416
           PVRWPGS+WRCL+VRWDD+E+ RH RVSPWEIEPSGS   +NNL+++GLKRT+IGLPS K
Sbjct: 336 PVRWPGSRWRCLMVRWDDLEATRHNRVSPWEIEPSGSASTANNLMSAGLKRTKIGLPSAK 395

Query: 417 PEFPVPDGIGVTDFGESLRFQKVLQGQEILGFNTLYDGGDCQNLHPSEVRRGILGSNGSG 476
            +FPV + IG +DFGESLRFQKVLQGQE+LG NT YD  + Q+   S++RR   GSN   
Sbjct: 396 LDFPVSNAIGTSDFGESLRFQKVLQGQEMLGVNTTYDSFNAQSHQLSDLRRCYPGSNYPR 455

Query: 477 IAAIGDGSRNLQVKSDISYKGIGIGFGESFRFHKVLQGQEIFPKSPYGRAPTNNEARGIG 536
           IAA G+     QV S++S    GIGF ESFRF KVLQGQEI P  PYGRA + +EA G G
Sbjct: 456 IAATGNSIGISQVSSNVSNN--GIGFSESFRFQKVLQGQEILPSQPYGRALSVDEACGNG 513

Query: 537 SLGISDGVLVSGSRNRWSAVVPGYNTHTSPSAPPVQVSSPSSVLMFQLASNPI--SNYNP 594
             G+ DG     SRN WS+ V   ++H  P  P  QVSSPSSV MFQ A NP+  S+YN 
Sbjct: 514 RFGLFDGFQAMRSRNGWSSHVSNNSSHLHPPVPSGQVSSPSSVFMFQQAVNPVLNSDYNN 573

Query: 595 PYSLNDQEK-EQRVNCQSFFHNSEIYGGKHASSSFLDHSFRGGDQEVMDSIGQSNEH--- 650
                  +K  QRV+     + SE+ GGK  S+ + +   RG  QE  +S G SN H   
Sbjct: 574 QIGQVMGDKVHQRVS-----YASEVKGGKFVSTPY-EPLLRGLSQEGTNSFGLSNFHNQL 627

Query: 651 -ISPPLVGQPTVRGSQDLVSSCKGSCRLFGFSLTEERHVANIEDNAAPVASPLNPRSSFL 709
             S        +R SQ+LV SCK  CR+FGFSLTE   VA+ E   +   +   P  SF 
Sbjct: 628 DSSRSHDSVSVLRASQELVPSCKSRCRVFGFSLTEGAPVASKEATDSSAVACAGP--SFT 685

Query: 710 SHVGQQFHPKPPVMSKATGSNCTN 733
            HV   FHP   + SKA  S CT 
Sbjct: 686 RHVEDDFHPGHSLRSKAVASYCTK 709

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	749
TAIR|locus:2057609	608	ETT "ETTIN" [Arabidopsis thali	0.602	0.741	0.639	1.5e-165
TAIR|locus:2175098	788	ARF4 "auxin response factor 4"	0.610	0.579	0.508	3.7e-116
TAIR|locus:2174013	859	ARF2 "auxin response factor 2"	0.644	0.562	0.416	7.7e-97
TAIR|locus:2025991	665	ARF1 "auxin response factor 1"	0.481	0.542	0.492	8e-91
TAIR|locus:2204237	935	ARF6 "auxin response factor 6"	0.489	0.392	0.488	5.6e-90
TAIR|locus:2152642	811	ARF8 "auxin response factor 8"	0.500	0.462	0.467	3.9e-89
TAIR|locus:2202205	1086	ARF19 "auxin response factor 1	0.443	0.305	0.508	1.5e-87
TAIR|locus:2035454	902	MP "MONOPTEROS" [Arabidopsis t	0.463	0.384	0.505	4.3e-86
TAIR|locus:2039124	622	ARF11 "auxin response factor 1	0.431	0.519	0.494	1.3e-84
TAIR|locus:2076765	602	ARF18 "auxin response factor 1	0.471	0.586	0.469	3.1e-83

TAIR|locus:2057609 ETT "ETTIN" [Arabidopsis thaliana (taxid:3702)]

 Score = 1516 (538.7 bits), Expect = 1.5e-165, Sum P(3) = 1.5e-165
 Identities = 294/460 (63%), Positives = 342/460 (74%)

Query:     1 MVGLIDLNTTEDDENPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSLELWHAC 60
             M GLIDLN  E +E+                                    V LELWHAC
Sbjct:     1 MGGLIDLNVMETEEDETQTQTPSSASGSVSPTSSSSASVSVVSSNSAGGG-VCLELWHAC 59

Query:    61 AGPLISLPKRGSVVVYFPQGHLEHVSDFXXXXXXXYDLPPHPFCRVADVKLHAEAASDEV 120
             AGPLISLPKRGS+V+YFPQGHLE   DF       Y LPPH FCR+ DVKLHAE  +DEV
Sbjct:    60 AGPLISLPKRGSLVLYFPQGHLEQAPDFSAAI---YGLPPHVFCRILDVKLHAETTTDEV 116

Query:   121 YAQVSLVPD-ELIEQKVREGKIE-DGDEDSVEVVAKSSTPHMFCKTLTASDTSTHGGFSV 178
             YAQVSL+P+ E IE+KVREG I+ DG E+  EV+ +S+TPHMFCKTLTASDTSTHGGFSV
Sbjct:   117 YAQVSLLPESEDIERKVREGIIDVDGGEEDYEVLKRSNTPHMFCKTLTASDTSTHGGFSV 176

Query:   179 PRRAAEDCFPPLDYSQQRPSQELVAKDLHGLEWRFRHIYRGQPRRHLLTTGWSAFVNKKK 238
             PRRAAEDCFPPLDYSQ RPSQEL+A+DLHGLEWRFRHIYRGQPRRHLLTTGWSAFVNKKK
Sbjct:   177 PRRAAEDCFPPLDYSQPRPSQELLARDLHGLEWRFRHIYRGQPRRHLLTTGWSAFVNKKK 236

Query:   239 LVSGDAVLFLRGEDGELRLGIRRAPHVKSGATFPSFCSQQSSPNSVTEVVDAIARKRAFS 298
             LVSGDAVLFLRG+DG+LRLG+RRA  ++  A   +  +Q  + N+ +EV  AI+    FS
Sbjct:   237 LVSGDAVLFLRGDDGKLRLGVRRASQIEGTAALSAQYNQNMNHNNFSEVAHAISTHSVFS 296

Query:   299 ISYNPRASASEFIIPVNKFLKSLDHSFAVGMRFKMRFETDDAAERRYTGVIMGVGDVDPV 358
             ISYNP+AS S FIIP  KFLK +D+ F +GMRFK R E++DA+ERR  G+I G+ D+DP+
Sbjct:   297 ISYNPKASWSNFIIPAPKFLKVVDYPFCIGMRFKARVESEDASERRSPGIISGISDLDPI 356

Query:   359 RWPGSKWRCLLVRWDDVESNRHT-RVSPWEIEPSGSVCGSNNLITSGLKRTRIGLPSGKP 417
             RWPGSKWRCLLVRWDD+ +N H  RVSPWEIEPSGS+  S + +T+G KR+RIG  SGKP
Sbjct:   357 RWPGSKWRCLLVRWDDIVANGHQQRVSPWEIEPSGSISNSGSFVTTGPKRSRIGFSSGKP 416

Query:   418 EFPVPDGIGVTDFGESLRFQKVLQGQEIL-GF-NTLYDGG 455
             + PV +GI  TDF ESLRFQ+VLQGQEI  GF NT  DGG
Sbjct:   417 DIPVSEGIRATDFEESLRFQRVLQGQEIFPGFINTCSDGG 456

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0009725 "response to hormone stimulus" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;TAS

GO:0009850 "auxin metabolic process" evidence=TAS

GO:0010158 "abaxial cell fate specification" evidence=IGI

GO:0010050 "vegetative phase change" evidence=IGI;RCA;IMP

GO:0007389 "pattern specification process" evidence=RCA

GO:0009616 "virus induced gene silencing" evidence=RCA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009887 "organ morphogenesis" evidence=RCA

GO:0010051 "xylem and phloem pattern formation" evidence=RCA

GO:0048438 "floral whorl development" evidence=RCA

GO:0048439 "flower morphogenesis" evidence=RCA

GO:0048519 "negative regulation of biological process" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2175098 ARF4 "auxin response factor 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 1111 (396.2 bits), Expect = 3.7e-116, Sum P(2) = 3.7e-116
 Identities = 241/474 (50%), Positives = 306/474 (64%)

Query:    55 ELWHACAGPLISLPKRGSVVVYFPQGHLEH---VSDFXXXXXXXYDLPPHPFCRVADVKL 111
             ELWHACAGPL  LPK+G+VVVYFPQGHLE    VS         +DL P   CRV +V+L
Sbjct:    65 ELWHACAGPLTCLPKKGNVVVYFPQGHLEQDAMVSYSSPLEIPKFDLNPQIVCRVVNVQL 124

Query:   112 HAEAASDEVYAQVSLVPDELIEQKVREGK-IED--GDEDSVEVVAKSSTPHMFCKTLTAS 168
              A   +DEVY QV+L+P +       EGK +++  G+E+     +   TPHMFCKTLTAS
Sbjct:   125 LANKDTDEVYTQVTLLPLQEFSMLNGEGKEVKELGGEEERNGSSSVKRTPHMFCKTLTAS 184

Query:   169 DTSTHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGLEWRFRHIYRGQPRRHLLTT 228
             DTSTHGGFSVPRRAAEDCF PLDY QQRPSQEL+AKDLHG+EW+FRHIYRGQPRRHLLTT
Sbjct:   185 DTSTHGGFSVPRRAAEDCFAPLDYKQQRPSQELIAKDLHGVEWKFRHIYRGQPRRHLLTT 244

Query:   229 GWSAFVNKKKLVSGDAVLFLRGEDGELRLGIRRAPHVKSGATFPSFCSQQSSPNSVTEVV 288
             GWS FV++K LVSGDAVLFLR E GELRLGIRRA   ++G    S   + S  N ++ V 
Sbjct:   245 GWSIFVSQKNLVSGDAVLFLRDEGGELRLGIRRAARPRNGLP-DSIIEKNSCSNILSLVA 303

Query:   289 DAIARKRAFSISYNPRASASEFIIPVNKFLKSLDHSFAVGMRFKMRFETDDAAERRYTGV 348
             +A++ K  F + Y+PRA+ +EF+IP  K++ S+     +G RF+MRFE DD+ ERR  GV
Sbjct:   304 NAVSTKSMFHVFYSPRATHAEFVIPYEKYITSIRSPVCIGTRFRMRFEMDDSPERRCAGV 363

Query:   349 IMGVGDVDPVRWPGSKWRCLLVRWDD-VESNRHTRVSPWEIEPSGSVCGSNNLITSGLKR 407
             + GV D+DP RWP SKWRCLLVRWD+   S+   RVSPWEI+PS S+   +   +   KR
Sbjct:   364 VTGVCDLDPYRWPNSKWRCLLVRWDESFVSDHQERVSPWEIDPSVSLPHLSIQSSPRPKR 423

Query:   408 TRIGL-PSGKPEFPVPDGIGVTDFGESLRFQKVLQGQEILGFNTLYDGGDCQNLHPSEVR 466
                GL  +  P  P+    G  DF ES+R  KVLQGQE +G  +   G D  N     + 
Sbjct:   424 PWAGLLDTTPPGNPITKRGGFLDFEESVRPSKVLQGQENIGSASPSQGFDVMN---RRIL 480

Query:   467 RGILGSNGSGIAAIGDGSRNLQVKSDISYKGIG---IGFGESFRFHKVLQGQEI 517
                + S+ + +  +    ++ +    +   G+     G  +  RF +VLQGQEI
Sbjct:   481 DFAMQSHANPVL-VSSRVKD-RFGEFVDATGVNPACSGVMDLDRFPRVLQGQEI 532

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0009725 "response to hormone stimulus" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0010158 "abaxial cell fate specification" evidence=IGI

GO:0010050 "vegetative phase change" evidence=IGI

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2174013 ARF2 "auxin response factor 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 921 (329.3 bits), Expect = 7.7e-97, Sum P(2) = 7.7e-97
 Identities = 219/526 (41%), Positives = 302/526 (57%)

Query:    55 ELWHACAGPLISLPKRGSVVVYFPQGHLEHVSDFXXXXXXX----YDLPPHPFCRVADVK 110
             ELWHACAGPL+++P++   V YFPQGH+E V              YDLP    CRV +V 
Sbjct:    61 ELWHACAGPLVTVPRQDDRVFYFPQGHIEQVEASTNQAAEQQMPLYDLPSKLLCRVINVD 120

Query:   111 LHAEAASDEVYAQVSLVPDELIEQKVREGKIEDGDEDSVEVVAKSSTP-----HMFCKTL 165
             L AEA +DEVYAQ++L+P+             + DE+++E  A    P     H FCKTL
Sbjct:   121 LKAEADTDEVYAQITLLPEA------------NQDENAIEKEAPLPPPPRFQVHSFCKTL 168

Query:   166 TASDTSTHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGLEWRFRHIYRGQPRRHL 225
             TASDTSTHGGFSV RR A++C PPLD S+Q P+QELVAKDLH  EWRFRHI+RGQPRRHL
Sbjct:   169 TASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELVAKDLHANEWRFRHIFRGQPRRHL 228

Query:   226 LTTGWSAFVNKKKLVSGDAVLFLRGEDGELRLGIRRAPHVKSGATFPSFCSQQSSPNSVT 285
             L +GWS FV+ K+LV+GDA +FLRGE+GELR+G+RRA   + G    S  S  S    V 
Sbjct:   229 LQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMR-QQGNVPSSVISSHSMHLGVL 287

Query:   286 EVV-DAIARKRAFSISYNPRASASEFIIPVNKFLKSLDHSFAVGMRFKMRFETDDAAERR 344
                  AI+    F++ Y PR S SEFI+P +++++S+ +++++GMRFKMRFE ++A E+R
Sbjct:   288 ATAWHAISTGTMFTVYYKPRTSPSEFIVPFDQYMESVKNNYSIGMRFKMRFEGEEAPEQR 347

Query:   345 YTGVIMGVGDVDPVRWPGSKWRCLLVRWDDVES-NRHTRVSPWEIEPSGSVCGSNNLITS 403
             +TG I+G+ + DP RWP SKWR L VRWD+  S  R  RVSPW++EP+ +    + +   
Sbjct:   348 FTGTIVGIEESDPTRWPKSKWRSLKVRWDETSSIPRPDRVSPWKVEPALAPPALSPVPMP 407

Query:   404 GLKRTRIGLPSGKPEFPVPDGIGVT----DFGESLRFQKVLQGQEILGFNTLY-DGGDCQ 458
               KR R  +    P+  +    G T    D   +    +VLQGQE     T + +  +C 
Sbjct:   408 RPKRPRSNIAPSSPDSSMLTREGTTKANMDPLPASGLSRVLQGQEYSTLRTKHTESVECD 467

Query:   459 NLHPSEVRRGILGSNGSGIAAIGD---GSRNLQ--VKSDISYKGIGIGFGESFRFHKVLQ 513
                 S V +     +   + + G    GS N     + + +Y  +  GFG +        
Sbjct:   468 APENSVVWQSSADDDKVDVVS-GSRRYGSENWMSSARHEPTYTDLLSGFGTNI---DPSH 523

Query:   514 GQEIFPKSPYGRAPTNNEARGIGSLGISDGVLVSGSRNRWSAVVPG 559
             GQ I P   +  +P+   A+ I  L  S+G       N+W  +  G
Sbjct:   524 GQRI-PFYDHSSSPSM-PAKRI--LSDSEGKF-DYLANQWQMIHSG 564

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0009725 "response to hormone stimulus" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IMP;TAS

GO:0009911 "positive regulation of flower development" evidence=IMP

GO:0010047 "fruit dehiscence" evidence=IMP

GO:0010150 "leaf senescence" evidence=IMP

GO:0010227 "floral organ abscission" evidence=IMP

GO:0008285 "negative regulation of cell proliferation" evidence=IMP

GO:0048481 "ovule development" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0009737 "response to abscisic acid stimulus" evidence=IMP

GO:0043565 "sequence-specific DNA binding" evidence=IDA

GO:0042744 "hydrogen peroxide catabolic process" evidence=RCA

TAIR|locus:2025991 ARF1 "auxin response factor 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 870 (311.3 bits), Expect = 8.0e-91, Sum P(2) = 8.0e-91
 Identities = 189/384 (49%), Positives = 240/384 (62%)

Query:    55 ELWHACAGPLISLPKRGSVVVYFPQGHLEHVSDFXXXXXX----XYDLPPHPFCRVADVK 110
             ELWHACAGPL++LP+ G  V YFP+GH+E +              ++LP    C+V +++
Sbjct:    22 ELWHACAGPLVTLPREGERVYYFPEGHMEQLEASMHQGLEQQMPSFNLPSKILCKVINIQ 81

Query:   111 LHAEAASDEVYAQVSLVPDELIEQKVREGKIEDGDEDSVEVVAKSSTPHMFCKTLTASDT 170
               AE  +DEVYAQ++L+P+  ++Q       E    D+     +  T H FCKTLTASDT
Sbjct:    82 RRAEPETDEVYAQITLLPE--LDQS------EPTSPDAPVQEPEKCTVHSFCKTLTASDT 133

Query:   171 STHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGLEWRFRHIYRGQPRRHLLTTGW 230
             STHGGFSV RR A+DC PPLD SQQ P QELVA DLH  EW FRHI+RGQPRRHLLTTGW
Sbjct:   134 STHGGFSVLRRHADDCLPPLDMSQQPPWQELVATDLHNSEWHFRHIFRGQPRRHLLTTGW 193

Query:   231 SAFVNKKKLVSGDAVLFLRGEDGELRLGIRRAPHVKSGATFPS-FCSQQSSPNSV-TEVV 288
             S FV+ KKLV+GDA +FLRGE+ ELR+G+RR  H++     PS   S  S    V     
Sbjct:   194 SVFVSSKKLVAGDAFIFLRGENEELRVGVRR--HMRQQTNIPSSVISSHSMHIGVLATAA 251

Query:   289 DAIARKRAFSISYNPRASASEFIIPVNKFLKSLDHSFAVGMRFKMRFETDDAAERRYTGV 348
              AI     FS+ Y PR S SEFI+ VN++L++     +VGMRFKMRFE ++A E+R++G 
Sbjct:   252 HAITTGTIFSVFYKPRTSRSEFIVSVNRYLEAKTQKLSVGMRFKMRFEGEEAPEKRFSGT 311

Query:   349 IMGVGDVDPVRWPGSKWRCLLVRWDDVESN-RHTRVSPWEIEP--SGSVCGSNNLITSGL 405
             I+GV +     W  S+WR L V+WD+  S  R  RVSPWE+EP  + S   S        
Sbjct:   312 IVGVQENKSSVWHDSEWRSLKVQWDEPSSVFRPERVSPWELEPLVANSTPSSQPQPPQRN 371

Query:   406 KRTRI-GLPSGK--PEFPV-PDGI 425
             KR R  GLPS    P  PV PDG+
Sbjct:   372 KRPRPPGLPSPATGPSGPVTPDGV 395

GO:0003677 "DNA binding" evidence=IEA;IDA;IPI

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0009725 "response to hormone stimulus" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;TAS

GO:0010150 "leaf senescence" evidence=IGI

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEP

GO:0005515 "protein binding" evidence=IPI

GO:0006306 "DNA methylation" evidence=RCA

GO:0006342 "chromatin silencing" evidence=RCA

GO:0006346 "methylation-dependent chromatin silencing" evidence=RCA

GO:0007267 "cell-cell signaling" evidence=RCA

GO:0009616 "virus induced gene silencing" evidence=RCA

GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA

GO:0016246 "RNA interference" evidence=RCA

GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=IEP

TAIR|locus:2204237 ARF6 "auxin response factor 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 861 (308.1 bits), Expect = 5.6e-90, Sum P(2) = 5.6e-90
 Identities = 189/387 (48%), Positives = 242/387 (62%)

Query:    55 ELWHACAGPLISLPKRGSVVVYFPQGHLEHVSDFXXXXXXXY--DLPP-HP--FCRVADV 109
             ELWHACAGPL+SLP  GS VVYFPQGH E V+         +  + P  HP   C++ +V
Sbjct:    25 ELWHACAGPLVSLPPVGSRVVYFPQGHSEQVAASTNKEVDAHIPNYPSLHPQLICQLHNV 84

Query:   110 KLHAEAASDEVYAQVSLVPDELIEQKVREGKIEDGDEDSVEVVAKSSTPHMFCKTLTASD 169
              +HA+  +DEVYAQ++L P    EQK      E G      V ++  T + FCKTLTASD
Sbjct:    85 TMHADVETDEVYAQMTLQPLNAQEQKDPYLPAELG------VPSRQPTNY-FCKTLTASD 137

Query:   170 TSTHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGLEWRFRHIYRGQPRRHLLTTG 229
             TSTHGGFSVPRRAAE  FPPLDYSQQ P+QEL+A+DLH  EW+FRHI+RGQP+RHLLTTG
Sbjct:   138 TSTHGGFSVPRRAAEKVFPPLDYSQQPPAQELMARDLHDNEWKFRHIFRGQPKRHLLTTG 197

Query:   230 WSAFVNKKKLVSGDAVLFLRGEDGELRLGIRRAPHVKSGATFPSFCSQQSSPNSVTEVVD 289
             WS FV+ K+LV+GD+VLF+  +  +L LGIRRA   ++        S       +     
Sbjct:   198 WSVFVSAKRLVAGDSVLFIWNDKNQLLLGIRRANRPQTVMPSSVLSSDSMHLGLLAAAAH 257

Query:   290 AIARKRAFSISYNPRASASEFIIPVNKFLKSLDHS-FAVGMRFKMRFETDDAAERRYTGV 348
             A A    F+I YNPRAS SEF+IP+ K++K++ H+  +VGMRF+M FET++++ RRY G 
Sbjct:   258 AAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGT 317

Query:   349 IMGVGDVDPVRWPGSKWRCLLVRWDD-VESNRHTRVSPWEIEPSGSVCGSNNLITSGLKR 407
             I G+ D+DP RW  S WR + V WD+     R  RVS WEIEP  +     +     LKR
Sbjct:   318 ITGICDLDPTRWANSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKR 377

Query:   408 TRIGLPSGKPEFPVPDGIGVTDFGESL 434
                  P G P F    G+   D G S+
Sbjct:   378 P---WPPGLPSF---HGLKEDDMGMSM 398

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0009725 "response to hormone stimulus" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009733 "response to auxin stimulus" evidence=IMP

GO:0009908 "flower development" evidence=IGI

GO:0005515 "protein binding" evidence=IPI

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009886 "post-embryonic morphogenesis" evidence=RCA

GO:0009887 "organ morphogenesis" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010051 "xylem and phloem pattern formation" evidence=RCA

GO:0010073 "meristem maintenance" evidence=RCA

GO:0048439 "flower morphogenesis" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

GO:0048507 "meristem development" evidence=RCA

GO:0048519 "negative regulation of biological process" evidence=RCA

TAIR|locus:2152642 ARF8 "auxin response factor 8" [Arabidopsis thaliana (taxid:3702)]

 Score = 869 (311.0 bits), Expect = 3.9e-89, Sum P(2) = 3.9e-89
 Identities = 186/398 (46%), Positives = 246/398 (61%)

Query:    55 ELWHACAGPLISLPKRGSVVVYFPQGHLEHVSDFXXXXXXXY-----DLPPHPFCRVADV 109
             ELWHACAGPL+SLP  GS VVYFPQGH E V+         +      LPP   C++ +V
Sbjct:    22 ELWHACAGPLVSLPSSGSRVVYFPQGHSEQVAATTNKEVDGHIPNYPSLPPQLICQLHNV 81

Query:   110 KLHAEAASDEVYAQVSLVPDELIEQKVREGKIEDGDEDSVEVVAKSSTPHMFCKTLTASD 169
              +HA+  +DEVYAQ++L P    EQK     IE G       +      + FCKTLTASD
Sbjct:    82 TMHADVETDEVYAQMTLQPLTPEEQKETFVPIELG-------IPSKQPSNYFCKTLTASD 134

Query:   170 TSTHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGLEWRFRHIYRGQPRRHLLTTG 229
             TSTHGGFSVPRRAAE  FPPLDY+ Q P+QEL+A+DLH +EW+FRHI+RGQP+RHLLTTG
Sbjct:   135 TSTHGGFSVPRRAAEKVFPPLDYTLQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTG 194

Query:   230 WSAFVNKKKLVSGDAVLFLRGEDGELRLGIRRAPHVKSGATFPSFCSQQSSPNSVTEVVD 289
             WS FV+ K+LV+GD+V+F+R E  +L LGIR A   ++        S       +     
Sbjct:   195 WSVFVSAKRLVAGDSVIFIRNEKNQLFLGIRHATRPQTIVPSSVLSSDSMHIGLLAAAAH 254

Query:   290 AIARKRAFSISYNPRASASEFIIPVNKFLKSLDHS-FAVGMRFKMRFETDDAAERRYTGV 348
             A A    F++ ++PRAS SEF+I ++K++K++ H+  +VGMRF+M FET++++ RRY G 
Sbjct:   255 ASATNSCFTVFFHPRASQSEFVIQLSKYIKAVFHTRISVGMRFRMLFETEESSVRRYMGT 314

Query:   349 IMGVGDVDPVRWPGSKWRCLLVRWDD-VESNRHTRVSPWEIEPSGSVCGSNNLITSGLKR 407
             I G+ D+D VRWP S WR + V WD+     R  RVS WEIEP  +     +L    LKR
Sbjct:   315 ITGISDLDSVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSLFPLRLKR 374

Query:   408 T-RIGLPSGKPEFPVPDGIGVTDFGESLRFQKVLQGQE 444
                 G  S      +PDG G  D G  L + +   G++
Sbjct:   375 PWHAGTSS------LPDGRG--DLGSGLTWLRGGGGEQ 404

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0009725 "response to hormone stimulus" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;TAS

GO:0009733 "response to auxin stimulus" evidence=IMP

GO:0009908 "flower development" evidence=IGI

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009886 "post-embryonic morphogenesis" evidence=RCA

GO:0009887 "organ morphogenesis" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0010051 "xylem and phloem pattern formation" evidence=RCA

GO:0048439 "flower morphogenesis" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

GO:0048507 "meristem development" evidence=RCA

GO:0048519 "negative regulation of biological process" evidence=RCA

TAIR|locus:2202205 ARF19 "auxin response factor 19" [Arabidopsis thaliana (taxid:3702)]

 Score = 852 (305.0 bits), Expect = 1.5e-87, Sum P(2) = 1.5e-87
 Identities = 175/344 (50%), Positives = 222/344 (64%)

Query:    52 VSLELWHACAGPLISLPKRGSVVVYFPQGHLEHVSDFXXXXXXX---Y-DLPPHPFCRVA 107
             ++ +LWHACAGPL+SLP  GS+VVYFPQGH E V+            Y +LP    C + 
Sbjct:    20 INSQLWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMQKQTDFIPNYPNLPSKLICLLH 79

Query:   108 DVKLHAEAASDEVYAQVSLVPDELIEQKVREGKIEDGDEDSVEVVAKSSTPHMFCKTLTA 167
              V LHA+  +DEVYAQ++L P   + +  RE  +     D    + +  T   FCKTLTA
Sbjct:    80 SVTLHADTETDEVYAQMTLQP---VNKYDREALLAS---DMGLKLNRQPT-EFFCKTLTA 132

Query:   168 SDTSTHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGLEWRFRHIYRGQPRRHLLT 227
             SDTSTHGGFSVPRRAAE  FPPLD+S Q P+QE+VAKDLH   W FRHIYRGQP+RHLLT
Sbjct:   133 SDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQEIVAKDLHDTTWTFRHIYRGQPKRHLLT 192

Query:   228 TGWSAFVNKKKLVSGDAVLFLRGEDGELRLGIRRAPHVKSGATFPSFCSQQSSPNSVTEV 287
             TGWS FV+ K+L +GD+VLF+R E  +L LGIRRA       +     S       +   
Sbjct:   193 TGWSVFVSTKRLFAGDSVLFVRDEKSQLMLGIRRANRQTPTLSSSVISSDSMHIGILAAA 252

Query:   288 VDAIARKRAFSISYNPRASASEFIIPVNKFLKSLDHSFAVGMRFKMRFETDDAAERRYTG 347
               A A    F+I +NPRAS SEF++P+ K+ K+L    ++GMRF+M FET+D   RRY G
Sbjct:   253 AHANANSSPFTIFFNPRASPSEFVVPLAKYNKALYAQVSLGMRFRMMFETEDCGVRRYMG 312

Query:   348 VIMGVGDVDPVRWPGSKWRCLLVRWDD-VESNRHTRVSPWEIEP 390
              + G+ D+DPVRW GS+WR L V WD+    +R +RVS WEIEP
Sbjct:   313 TVTGISDLDPVRWKGSQWRNLQVGWDESTAGDRPSRVSIWEIEP 356

GO:0005634 "nucleus" evidence=ISM;IEA;IDA;TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0009725 "response to hormone stimulus" evidence=IEA

GO:0009733 "response to auxin stimulus" evidence=RCA;IMP;NAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0048366 "leaf development" evidence=IGI

GO:0048527 "lateral root development" evidence=IGI;RCA

GO:0009723 "response to ethylene stimulus" evidence=IMP

GO:0003677 "DNA binding" evidence=IDA

GO:0010311 "lateral root formation" evidence=IGI

GO:0007155 "cell adhesion" evidence=RCA

GO:0009741 "response to brassinosteroid stimulus" evidence=RCA

GO:0010090 "trichome morphogenesis" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

GO:0045010 "actin nucleation" evidence=RCA

GO:0048765 "root hair cell differentiation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

GO:0043565 "sequence-specific DNA binding" evidence=IDA

GO:0046983 "protein dimerization activity" evidence=IDA

TAIR|locus:2035454 MP "MONOPTEROS" [Arabidopsis thaliana (taxid:3702)]

 Score = 861 (308.1 bits), Expect = 4.3e-86, P = 4.3e-86
 Identities = 184/364 (50%), Positives = 234/364 (64%)

Query:    52 VSLELWHACAGPLISLPKRGSVVVYFPQGHLEHVSDFXXXXXXX----Y-DLPPHPFCRV 106
             ++ ELWHACAGPL+ LP+ GS+V YF QGH E V+             Y +LP    C+V
Sbjct:    51 INSELWHACAGPLVCLPQVGSLVYYFSQGHSEQVAVSTRRSATTQVPNYPNLPSQLMCQV 110

Query:   107 ADVKLHAEAASDEVYAQVSLVPDELIEQKVREGKIEDGDEDSVEVVAKSSTP-HMFCKTL 165
              +V LHA+  SDE+YAQ+SL P    E+ V    + D       ++  S  P   FCKTL
Sbjct:   111 HNVTLHADKDSDEIYAQMSLQPVHS-ERDVFP--VPD-----FGMLRGSKHPTEFFCKTL 162

Query:   166 TASDTSTHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGLEWRFRHIYRGQPRRHL 225
             TASDTSTHGGFSVPRRAAE  FPPLDYS Q P+QELV +DLH   W FRHIYRGQP+RHL
Sbjct:   163 TASDTSTHGGFSVPRRAAEKLFPPLDYSAQPPTQELVVRDLHENTWTFRHIYRGQPKRHL 222

Query:   226 LTTGWSAFVNKKKLVSGDAVLFLRGEDGELRLGIRRAPHVKSGATFPSFCSQQSSPNSVT 285
             LTTGWS FV  K+L +GD+VLF+R E  +L +G+RRA   ++        +       + 
Sbjct:   223 LTTGWSLFVGSKRLRAGDSVLFIRDEKSQLMVGVRRANRQQTALPSSVLSADSMHIGVLA 282

Query:   286 EVVDAIARKRAFSISYNPRASASEFIIPVNKFLKSLDHS-FAVGMRFKMRFETDDAAERR 344
                 A A +  F I YNPRA  +EF+IP+ K+ K++  S  +VGMRF M FET+D+ +RR
Sbjct:   283 AAAHATANRTPFLIFYNPRACPAEFVIPLAKYRKAICGSQLSVGMRFGMMFETEDSGKRR 342

Query:   345 YTGVIMGVGDVDPVRWPGSKWRCLLVRWDDVESN-RHTRVSPWEIEPSGSVCGSNNLITS 403
             Y G I+G+ D+DP+RWPGSKWR L V WD+   N + TRVSPW+IE   S+    +L TS
Sbjct:   343 YMGTIVGISDLDPLRWPGSKWRNLQVEWDEPGCNDKPTRVSPWDIETPESLFIFPSL-TS 401

Query:   404 GLKR 407
             GLKR
Sbjct:   402 GLKR 405

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;IEP

GO:0009725 "response to hormone stimulus" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;TAS

GO:0009733 "response to auxin stimulus" evidence=IEP;RCA

GO:0005515 "protein binding" evidence=IPI

GO:0042802 "identical protein binding" evidence=IPI

GO:0016020 "membrane" evidence=IDA

GO:0009790 "embryo development" evidence=IGI

GO:0009908 "flower development" evidence=IGI

GO:0010305 "leaf vascular tissue pattern formation" evidence=IGI

GO:0048364 "root development" evidence=IGI

GO:0048507 "meristem development" evidence=IGI;RCA

GO:0044212 "transcription regulatory region DNA binding" evidence=IDA

GO:0006346 "methylation-dependent chromatin silencing" evidence=RCA

GO:0007155 "cell adhesion" evidence=RCA

GO:0009741 "response to brassinosteroid stimulus" evidence=RCA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009886 "post-embryonic morphogenesis" evidence=RCA

GO:0009887 "organ morphogenesis" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010051 "xylem and phloem pattern formation" evidence=IMP;RCA

GO:0010073 "meristem maintenance" evidence=RCA

GO:0010090 "trichome morphogenesis" evidence=RCA

GO:0016246 "RNA interference" evidence=RCA

GO:0031048 "chromatin silencing by small RNA" evidence=RCA

GO:0045010 "actin nucleation" evidence=RCA

GO:0048439 "flower morphogenesis" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

GO:0048519 "negative regulation of biological process" evidence=RCA

GO:0048527 "lateral root development" evidence=RCA

GO:0048765 "root hair cell differentiation" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

GO:0009942 "longitudinal axis specification" evidence=IMP

TAIR|locus:2039124 ARF11 "auxin response factor 11" [Arabidopsis thaliana (taxid:3702)]

 Score = 814 (291.6 bits), Expect = 1.3e-84, Sum P(2) = 1.3e-84
 Identities = 170/344 (49%), Positives = 219/344 (63%)

Query:    55 ELWHACAGPLISLPKRGSVVVYFPQGHLEHV-----SDFXXXXXXXYDLPPHPFCRVADV 109
             ELW ACAGPL+ +P+ G  V YFPQGH+E +               ++LPP   CRV  V
Sbjct:    42 ELWKACAGPLVEVPRYGERVFYFPQGHMEQLVASTNQGVVDQEIPVFNLPPKILCRVLSV 101

Query:   110 KLHAEAASDEVYAQVSLVPDELIEQKVREGKIEDGDEDSVEVVAKSSTPHMFCKTLTASD 169
              L AE  +DEVYAQ++L P+E  +Q       E    D   V     T   F K LTASD
Sbjct:   102 TLKAEHETDEVYAQITLQPEE--DQS------EPTSLDPPLVEPAKPTVDSFVKILTASD 153

Query:   170 TSTHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGLEWRFRHIYRGQPRRHLLTTG 229
             TSTHGGFSV R+ A +C P LD +Q  P+QELVA+DLHG EWRF+HI+RGQPRRHLLTTG
Sbjct:   154 TSTHGGFSVLRKHATECLPSLDMTQPTPTQELVARDLHGYEWRFKHIFRGQPRRHLLTTG 213

Query:   230 WSAFVNKKKLVSGDAVLFLRGEDGELRLGIRRAPHVKSGATFP-SFCSQQSSPNSVTEVV 288
             WS FV  K+LV+GDA +FLRGE G+LR+G+RR    K  +T P S  S QS    V    
Sbjct:   214 WSTFVTSKRLVAGDAFVFLRGETGDLRVGVRRL--AKQQSTMPASVISSQSMRLGVLATA 271

Query:   289 D-AIARKRAFSISYNPRASASEFIIPVNKFLKSLDHSFAVGMRFKMRFETDDAAERRYTG 347
               A+     F + Y PR S  +FII VNK++ ++ + F++GMR++MRFE +++ ER +TG
Sbjct:   272 SHAVTTTTIFVVFYKPRIS--QFIISVNKYMMAMKNGFSLGMRYRMRFEGEESPERIFTG 329

Query:   348 VIMGVGDVDPVRWPGSKWRCLLVRWDDVES-NRHTRVSPWEIEP 390
              I+G GD+   +WP SKWR L ++WD+  S  R  +VSPWEIEP
Sbjct:   330 TIIGSGDLSS-QWPASKWRSLQIQWDEPSSIQRPNKVSPWEIEP 372

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0009725 "response to hormone stimulus" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2076765 ARF18 "auxin response factor 18" [Arabidopsis thaliana (taxid:3702)]

 Score = 814 (291.6 bits), Expect = 3.1e-83, Sum P(2) = 3.1e-83
 Identities = 177/377 (46%), Positives = 230/377 (61%)

Query:    55 ELWHACAGPLISLPKRGSVVVYFPQGHLEHV-----SDFXXXXXXXYDLPPHPFCRVADV 109
             ELW  CAGPL+ +P+    V YFPQGH+E +               +DLPP   CRV DV
Sbjct:    25 ELWKVCAGPLVEVPRAQERVFYFPQGHMEQLVASTNQGINSEEIPVFDLPPKILCRVLDV 84

Query:   110 KLHAEAASDEVYAQVSLVPDELIEQKVREGKIEDGDEDSVEVVAKSSTPHMFCKTLTASD 169
              L AE  +DEVYAQ++L P+E  +Q       E    D   V       H F K LTASD
Sbjct:    85 TLKAEHETDEVYAQITLQPEE--DQS------EPTSLDPPIVGPTKQEFHSFVKILTASD 136

Query:   170 TSTHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGLEWRFRHIYRGQPRRHLLTTG 229
             TSTHGGFSV R+ A +C P LD +Q  P+QELV +DLHG EWRF+HI+RGQPRRHLLTTG
Sbjct:   137 TSTHGGFSVLRKHATECLPSLDMTQATPTQELVTRDLHGFEWRFKHIFRGQPRRHLLTTG 196

Query:   230 WSAFVNKKKLVSGDAVLFLRGEDGELRLGIRRAPHVKSGATFP-SFCSQQSSPNSVTEVV 288
             WS FV+ K+LV+GDA +FLRGE+G+LR+G+RR    +S  T P S  S QS    V    
Sbjct:   197 WSTFVSSKRLVAGDAFVFLRGENGDLRVGVRRLARHQS--TMPTSVISSQSMHLGVLATA 254

Query:   289 D-AIARKRAFSISYNPRASASEFIIPVNKFLKSLDHSFAVGMRFKMRFETDDAAERRYTG 347
               A+     F + Y PR S  +FI+ VNK+++++ H F++G RF+MRFE +++ ER +TG
Sbjct:   255 SHAVRTTTIFVVFYKPRIS--QFIVGVNKYMEAIKHGFSLGTRFRMRFEGEESPERIFTG 312

Query:   348 VIMGVGDVDPVRWPGSKWRCLLVRWDDVES-NRHTRVSPWEIEP---SGSVCGSNNLITS 403
              I+G GD+   +WP SKWR L V+WD+  +  R  +VSPWEIEP   +  +        S
Sbjct:   313 TIVGSGDLSS-QWPASKWRSLQVQWDEPTTVQRPDKVSPWEIEPFLATSPISTPAQQPQS 371

Query:   404 GLKRTRIGLPSGKPEFP 420
               KR+R   PS K   P
Sbjct:   372 KCKRSRPIEPSVKTPAP 388

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0009725 "response to hormone stimulus" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q0JKI9	ARFB_ORYSJ	No assigned EC number	0.4655	0.9225	0.9623	yes	no
O23661	ARFC_ARATH	No assigned EC number	0.6145	0.6421	0.7911	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00003037001 SubName- Full=Chromosome chr10 scaffold_138, whole genome shotgun sequence; (737 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	749
pfam06507	83	pfam06507, Auxin_resp, Auxin response factor	1e-41
pfam02362	97	pfam02362, B3, B3 DNA binding domain	6e-29
smart01019	96	smart01019, B3, B3 DNA binding domain	2e-25
cd10017	98	cd10017, B3_DNA, Plant-specific B3-DNA binding dom	1e-21
cd10016	142	cd10016, EcoRII_N, N-terminal domain of type IIE r	2e-04
cd10015	109	cd10015, BfiI_C_EcoRII_N_B3, DNA binding domains o	2e-04

>gnl|CDD|191545 pfam06507, Auxin_resp, Auxin response factor

 Score =  145 bits (369), Expect = 1e-41
 Identities = 46/83 (55%), Positives = 63/83 (75%)

Query: 287 VVDAIARKRAFSISYNPRASASEFIIPVNKFLKSLDHSFAVGMRFKMRFETDDAAERRYT 346
              A +    F + YNPRAS SEF++P  K+LK++++ F+VGMRFKMRFET+D++ERR++
Sbjct: 1   AAHAASTGSPFHVFYNPRASTSEFVVPYAKYLKAMNNPFSVGMRFKMRFETEDSSERRFS 60

Query: 347 GVIMGVGDVDPVRWPGSKWRCLL 369
           G I GV D+DP+RWP SKWR L 
Sbjct: 61  GTISGVSDLDPIRWPNSKWRSLQ 83

A conserved region of auxin-responsive transcription factors. Length = 83

>gnl|CDD|216995 pfam02362, B3, B3 DNA binding domain

 Score =  110 bits (277), Expect = 6e-29
 Identities = 35/102 (34%), Positives = 50/102 (49%), Gaps = 6/102 (5%)

Query: 161 FCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGLEWRFRHIYRGQ 220
           F K LT SD S  G   +P++ AE+          +  QE+   D  G  W  +  YR  
Sbjct: 1   FVKVLTPSDVSKDGRLVLPKKFAEENGLN------KKGQEITLLDPDGKSWTVKLRYRKS 54

Query: 221 PRRHLLTTGWSAFVNKKKLVSGDAVLFLRGEDGELRLGIRRA 262
            RR+LLT+GW  FV    L +GD+++F     G+  +GI R 
Sbjct: 55  GRRYLLTSGWKEFVKANGLKAGDSLVFKLDGGGKFVVGIFRK 96

This is a family of plant transcription factors with various roles in development, the aligned region corresponds the B3 DNA binding domain as described in this domain is found in VP1/AB13 transcription factors. Some proteins also have a second AP2 DNA binding domain pfam00847 such as RAV1. DNA binding activity was demonstrated by. Length = 97

>gnl|CDD|214977 smart01019, B3, B3 DNA binding domain

 Score =  100 bits (251), Expect = 2e-25
 Identities = 38/102 (37%), Positives = 50/102 (49%), Gaps = 6/102 (5%)

Query: 161 FCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGLEWRFRHIYRGQ 220
           F KTLT SD S HG   +P++ AE   PPL        +E+   D  G  W+ +  YRG 
Sbjct: 1   FFKTLTTSDVSKHGRLVLPKQFAESNGPPLK------PKEITLLDPDGKSWKVKLKYRGS 54

Query: 221 PRRHLLTTGWSAFVNKKKLVSGDAVLFLRGEDGELRLGIRRA 262
               LLT GW  FV    L +GD++ F    +GE  + I R 
Sbjct: 55  SGMFLLTGGWKEFVKANGLKAGDSLTFELDGNGEFVVSIFRK 96

Two DNA binding proteins, RAV1 and RAV2 from Arabidopsis thaliana contain two distinct amino acid sequence domains found only in higher plant species. The N-terminal regions of RAV1 and RAV2 are homologous to the AP2 DNA-binding domain (see ) present in a family of transcription factors, while the C-terminal region exhibits homology to the highly conserved C-terminal domain, designated B3, of VP1/ABI3 transcription factors. The AP2 and B3-like domains of RAV1 bind autonomously to the CAACA and CACCTG motifs, respectively, and together achieve a high affinity and specificity of binding. It has been suggested that the AP2 and B3-like domains of RAV1 are connected by a highly flexible structure enabling the two domains to bind to the CAACA and CACCTG motifs in various spacings and orientations. Length = 96

>gnl|CDD|197383 cd10017, B3_DNA, Plant-specific B3-DNA binding domain

 Score = 89.7 bits (223), Expect = 1e-21
 Identities = 31/104 (29%), Positives = 50/104 (48%), Gaps = 7/104 (6%)

Query: 159 HMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGLEWRFRHIYR 218
            +F K LT SD S+ G   +P++ A+   PP      +   E+  +D  G +W  +   R
Sbjct: 1   PLFFKVLTPSDVSSLGRLVLPKKFAKAHLPP------KEGVEVTLEDPDGKKWTVKLKKR 54

Query: 219 GQPRRHLLTTGWSAFVNKKKLVSGDAVLF-LRGEDGELRLGIRR 261
               R +L+ GW  FV    L  GD ++F L G + + ++ I R
Sbjct: 55  KNSGRMVLSGGWKEFVRANGLKEGDFLVFELDGRNSKFKVRIFR 98

The plant-specific B3 DNA binding domain superfamily includes the well-characterized auxin response factor (ARF) and the LAV (Leafy cotyledon2 [LEC2]-Abscisic acid insensitive3 [ABI3]-VAL) families, as well as the RAV (Related to ABI3 and VP1) and REM (REproductive Meristem) families. LEC2 and ABI3 have been shown to be involved in seed development, while other members of the LAV family seem to have a more general role, being expressed in many organs during plant development. Members of the ARF family bind to the auxin response element and depending on presence of an activation or repression domain, they activate or repress transcription. RAV and REM families are less studied B3 protein famillies. Length = 98

>gnl|CDD|197382 cd10016, EcoRII_N, N-terminal domain of type IIE restriction endonuclease EcoRII and similar proteins

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 18/69 (26%), Positives = 24/69 (34%), Gaps = 12/69 (17%)

Query: 161 FCKTLTASDTSTHG----GFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLH-----GLEW 211
           +CK L+A+DT   G    G  +P+ AAE  FP    +                   G   
Sbjct: 6   YCKRLSANDTGATGGHQAGIYIPKSAAELLFPS---NHPDEKNPNPDLTAKISSHDGPTT 62

Query: 212 RFRHIYRGQ 220
             R IY   
Sbjct: 63  ESRFIYYNN 71

N-terminal domain of type IIE restriction endonuclease EcoRII and similar proteins. Type II restriction endonucleases are components of restriction modification (RM) systems that protect bacteria and archaea against invading foreign DNA. They usually function as homodimers or homotetramers that cleave DNA at defined sites of 4 to 8 bp in length, and they require Mg2+, not ATP or GTP, for catalysis. EcoRII is specific for the 5'-CCWGG sequence (W stands for A or T). EcoRII consists of 2 domains, the C-terminal catalytic/dimerization domain (EcoRII-C), and the N-terminal effector DNA binding domain (EcoRII-N). To be catalytically active, EcoRII has to form a dimer. Length = 142

>gnl|CDD|197381 cd10015, BfiI_C_EcoRII_N_B3, DNA binding domains of BfiI, EcoRII and plant B3 proteins

 Score = 41.5 bits (97), Expect = 2e-04
 Identities = 30/106 (28%), Positives = 46/106 (43%), Gaps = 7/106 (6%)

Query: 161 FCKTLTASDTSTHGG----FSVPRRAAEDCFPPLDYSQQ-RPSQELVAKDL-HGLEWRFR 214
             K L+A+DT   GG      +P+   E   P ++++++  PS  L   D+    +W  R
Sbjct: 3   LIKRLSANDTGATGGHQVGLYIPKGIVEKFPPSINHTREANPSIFLTMHDISDCRDWEAR 62

Query: 215 HIYRGQPR-RHLLTTGWSAFVNKKKLVSGDAVLFLRGEDGELRLGI 259
            I+    R    LT G   FV +  L +GD  L     D E  + I
Sbjct: 63  AIFYNSNRNEKRLTRGGRGFVKQNPLNTGDLTLIAFDLDKEYNIRI 108

This family contains the N-terminal DNA binding domain of type IIE restriction endonuclease EcoRII-like proteins, the C-terminal DNA binding domain of type IIS restriction endonuclease BfiI-like proteins and plant-specific B3 proteins. Type II restriction endonucleases are components of restriction modification (RM) systems that protect bacteria and archaea against invading foreign DNA. They usually function as homodimers or homotetramers that cleave DNA at defined sites of 4 to 8 bp in length, and they require Mg2+, not ATP or GTP, for catalysis. EcoRII is specific for the 5'-CCWGG sequence (W stands for A or T). EcoRII consists of 2 domains, the C-terminal catalytic/dimerization domain (EcoRII-C), and the N-terminal effector DNA binding domain (EcoRII-N). BfiI is unique in cleaving DNA at fixed positions downstream of an asymmetric sequence in the absence of Mg2+. BfiI consists of two discrete domains with distinct functions: an N-terminal catalytic domain with non-specific nuclease activity and dimerization function that is more closely related to Nuc, an EDTA-resistant nuclease from the phospholipase D (PLD) superfamily; and a C-terminal domain that specifically recognizes its target sequences, 5'-ACTGGG-3'. B3 proteins are a family of plant-specific transcription factors, involved in a great variety of processes, including seed development and auxin response. Length = 109

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	749
PF06507	83	Auxin_resp: Auxin response factor; InterPro: IPR01	100.0
PF02362	100	B3: B3 DNA binding domain; InterPro: IPR003340 Two	99.7
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.43
PF09217	156	EcoRII-N: Restriction endonuclease EcoRII, N-termi	97.97
PF03754	114	DUF313: Domain of unknown function (DUF313) ; Inte	97.61
PF02309	215	AUX_IAA: AUX/IAA family; InterPro: IPR003311 The A	94.77

>PF06507 Auxin_resp: Auxin response factor; InterPro: IPR010525 This pattern represents a conserved region of auxin-responsive transcription factors

Probab=100.00  E-value=4.6e-35  Score=257.40  Aligned_cols=83  Identities=57%  Similarity=1.081  Sum_probs=81.8

Q ss_pred             HHHHHhcCCeEEEEEecCCCCCceeeehhhHhhhccCCCccCCeEEEeeecCccccceeeeEEEeeccCCCCCCCCCCce
Q 004489          287 VVDAIARKRAFSISYNPRASASEFIIPVNKFLKSLDHSFAVGMRFKMRFETDDAAERRYTGVIMGVGDVDPVRWPGSKWR  366 (749)
Q Consensus       287 a~~a~~~~~~F~V~Y~Pr~~~~EFvVp~~ky~~a~~~~w~~GmRFkM~fe~eDs~e~r~~GtI~gv~~~dp~~wp~S~WR  366 (749)
                      |+|||+++++|+|+||||++++|||||++||++||+++|++||||||+||+||+++++|+|||+||++.||++||+|+||
T Consensus         1 A~~aa~~~~~F~V~Y~PRa~~sEFVV~~~k~~~al~~~~~~GmRfkM~fE~eds~~~~~~GtI~~v~~~dp~~w~~S~WR   80 (83)
T PF06507_consen    1 AAHAAATGSPFEVFYYPRASPSEFVVPASKYDKALNHPWSVGMRFKMRFETEDSSERRWQGTIVGVSDLDPIRWPGSKWR   80 (83)
T ss_pred             ChhHhhcCCeEEEEECCCCCCcceEEEHHHHHHHhcCCCCCCcEEEEEeccCCCccceeeeEEeEeeccCCCCCCCCCcc
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEE
Q 004489          367 CLL  369 (749)
Q Consensus       367 ~L~  369 (749)
                      |||
T Consensus        81 ~Lq   83 (83)
T PF06507_consen   81 MLQ   83 (83)
T ss_pred             cCc
Confidence            996

The plant hormone auxin (indole-3-acetic acid) can regulate the gene expression of several families, including Aux/IAA, GH3 and SAUR families. Two related families of proteins, Aux/IAA proteins (IPR003311 from INTERPRO) and the auxin response factors (ARF), are key regulators of auxin-modulated gene expression []. There are multiple ARF proteins, some of which activate, while others repress transcription. ARF proteins bind to auxin-responsive cis-acting promoter elements (AuxREs) using an N-terminal DNA-binding domain. It is thought that Aux/IAA proteins activate transcription by modifying ARF activity through the C-terminal protein-protein interaction domains (IPR011525 from INTERPRO) found in both Aux/IAA and ARF proteins. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0009725 response to hormone stimulus, 0005634 nucleus

>PF02362 B3: B3 DNA binding domain; InterPro: IPR003340 Two DNA binding proteins, RAV1 and RAV2 from Arabidopsis thaliana contain two distinct amino acid sequence domains found only in higher plant species

Probab=99.70  E-value=7.5e-17  Score=143.30  Aligned_cols=97  Identities=32%  Similarity=0.471  Sum_probs=74.8

Q ss_pred             EEEecccccCCCCCceeeeccchhhcCCCCCCCCCCCceEEEEEeCCCCeEEEEEEEeCCCCceeeccchhhhhhccCCC
Q 004489          161 FCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGLEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLV  240 (749)
Q Consensus       161 F~K~LT~SDv~~~grfsVPk~~Ae~~FPpLd~~~~~p~q~L~~~D~~G~~W~Fr~~yrg~prrhlLTtGWs~FV~~K~L~  240 (749)
                      |.|+|+++|+...++|.||+++++.+.  ++   ....+++.++|..|+.|.+++.|++.+++++|++||..||++++|+
T Consensus         1 F~K~l~~s~~~~~~~l~iP~~f~~~~~--~~---~~~~~~v~l~~~~g~~W~v~~~~~~~~~~~~l~~GW~~Fv~~n~L~   75 (100)
T PF02362_consen    1 FFKVLKPSDVSSSCRLIIPKEFAKKHG--GN---KRKSREVTLKDPDGRSWPVKLKYRKNSGRYYLTGGWKKFVRDNGLK   75 (100)
T ss_dssp             EEEE--TTCCCCTT-EEE-HHHHTTTS-------SS--CEEEEEETTTEEEEEEEEEECCTTEEEEETTHHHHHHHCT--
T ss_pred             CEEEEEccCcCCCCEEEeCHHHHHHhC--CC---cCCCeEEEEEeCCCCEEEEEEEEEccCCeEEECCCHHHHHHHcCCC
Confidence            899999999999999999999999972  11   1245789999999999999999998888899999999999999999


Q ss_pred             CCCEEEEEecC--CCcEEEEEEEc
Q 004489          241 SGDAVLFLRGE--DGELRLGIRRA  262 (749)
Q Consensus       241 aGD~VvF~R~~--~G~l~vGIRRa  262 (749)
                      +||.|+|+...  ..++.|.|.|+
T Consensus        76 ~GD~~~F~~~~~~~~~~~v~i~~~   99 (100)
T PF02362_consen   76 EGDVCVFELIGNSNFTLKVHIFRK   99 (100)
T ss_dssp             TT-EEEEEE-SSSCE-EEEEEE--
T ss_pred             CCCEEEEEEecCCCceEEEEEEEC
Confidence            99999999865  45569999986

The N-terminal regions of RAV1 and RAV2 are homologous to the AP2 DNA-binding domain (see IPR001471 from INTERPRO) present in a family of transcription factors, while the C-terminal region exhibits homology to the highly conserved C-terminal domain, designated B3, of VP1/ABI3 transcription factors []. The AP2 and B3-like domains of RAV1 bind autonomously to the CAACA and CACCTG motifs, respectively, and together achieve a high affinity and specificity of binding. It has been suggested that the AP2 and B3-like domains of RAV1 are connected by a highly flexible structure enabling the two domains to bind to the CAACA and CACCTG motifs in various spacings and orientations [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1WID_A 1YEL_A.

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.43  E-value=7.2e-14  Score=160.66  Aligned_cols=149  Identities=17%  Similarity=0.358  Sum_probs=118.4

Q ss_pred             CCCCCEEEEEecCCCcEEEEEEEcCCCCCC-------------------C--CCCccccCCCCCchHHHHHHHHhcCCeE
Q 004489          239 LVSGDAVLFLRGEDGELRLGIRRAPHVKSG-------------------A--TFPSFCSQQSSPNSVTEVVDAIARKRAF  297 (749)
Q Consensus       239 L~aGD~VvF~R~~~G~l~vGIRRa~~~~~~-------------------~--~~~~~~~~~~~~~~l~~a~~a~~~~~~F  297 (749)
                      ...||.|+.+|.+..++.-.+|+...-.++                   .  +-+..+.-+|.+.++.-|.++.  ...|
T Consensus       874 pQmgDEViyfrQghqeyl~~~~~n~~~~~~~~p~~~~~v~~~kv~kl~~~~y~~~~~s~c~m~l~~idp~s~~~--~k~F  951 (1113)
T KOG0644|consen  874 PQMGDEVIYFRQGHQEYLEAVRLNNIELNNKEPWNKMAVEICKVEKLVYITYPGSGDSCCKMKLAVIDPASKLM--DKSF  951 (1113)
T ss_pred             ccccceeehhhhhhHHHHhhhhhccccccccCcccccchhhheeeeeeeeeccCCCcchheeeeeeecchhhhh--hccc
Confidence            468999999998777766555554331111                   0  1122222368888888888554  5679


Q ss_pred             EEEEecCCCCCceeeehhhHhhhccCCCccCCeEEEeeecCccc-cceeeeEEEeeccCCCCCCCCCCceeEEEEecCCC
Q 004489          298 SISYNPRASASEFIIPVNKFLKSLDHSFAVGMRFKMRFETDDAA-ERRYTGVIMGVGDVDPVRWPGSKWRCLLVRWDDVE  376 (749)
Q Consensus       298 ~V~Y~Pr~~~~EFvVp~~ky~~a~~~~w~~GmRFkM~fe~eDs~-e~r~~GtI~gv~~~dp~~wp~S~WR~L~V~WDe~~  376 (749)
                      .+.|......+||+|.+..|++|+.++|..+++||.-+..+-.. -.||.|+|.++.+..| .+|+|+|+|+.|+||..|
T Consensus       952 ~ltlpdlv~fpDFlV~rsrYd~AiQrnW~~~d~crvwwrda~~e~g~WWeG~ils~~pksp-~fpdSpwery~v~~~~~e 1030 (1113)
T KOG0644|consen  952 KLTLPDLVTFPDFLVERSRYDAAIQRNWTCRDKCRVWWRDAGEEDGAWWEGRILSVKPKSP-DFPDSPWERYIVRYDNTE 1030 (1113)
T ss_pred             eeecccccCcchhhhhhhhHHHHHhhccccccceeEEEccCCCcCCceeeeeeeeccCCCC-CCCCCcceeEEEEecCCc
Confidence            99999999999999999999999999999999999999522111 2399999999999999 999999999999999988


Q ss_pred             CCCCCCccccccccCCC
Q 004489          377 SNRHTRVSPWEIEPSGS  393 (749)
Q Consensus       377 ~~~~~RVSPWeIEpv~~  393 (749)
                      .   +.-||||.|++..
T Consensus      1031 ~---~~~spwe~~~i~d 1044 (1113)
T KOG0644|consen 1031 T---ELHSPWEMEPIPD 1044 (1113)
T ss_pred             c---cccCccccCCCcc
Confidence            8   6789999999985

>PF09217 EcoRII-N: Restriction endonuclease EcoRII, N-terminal; InterPro: IPR023372 There are four classes of restriction endonucleases: types I, II,III and IV

Probab=97.97  E-value=3.7e-05  Score=75.28  Aligned_cols=89  Identities=26%  Similarity=0.395  Sum_probs=60.0

Q ss_pred             CeeEEEecccccCCCCC----ceeeeccchhhcCCCCCC-CCCCCceEEEEEeCCC--CeEEEEEEEeCC------CCce
Q 004489          158 PHMFCKTLTASDTSTHG----GFSVPRRAAEDCFPPLDY-SQQRPSQELVAKDLHG--LEWRFRHIYRGQ------PRRH  224 (749)
Q Consensus       158 ~~~F~K~LT~SDv~~~g----rfsVPk~~Ae~~FPpLd~-~~~~p~q~L~~~D~~G--~~W~Fr~~yrg~------prrh  224 (749)
                      -..|+|.|++.|++..|    |+.|||..++..||.+.. ....|...|.+++..+  ..|+||+||.++      ...+
T Consensus         7 ~~~~~K~LSaNDtGaTGgHQaGiyIpk~~~~~lFp~~~~~~~~Np~~~~~~~~~s~~~~~~~~r~iYYnn~~~~gTRNE~   86 (156)
T PF09217_consen    7 WAIYCKRLSANDTGATGGHQAGIYIPKSAAELLFPSINHTKEENPDIWLKARWQSHFVTDSQVRFIYYNNRLFGGTRNEY   86 (156)
T ss_dssp             EEEEEEE--CCCCTTTSSS--EEEE-HHHHHHH-GGG-SSSSSS-EEEEEEEETTTT---EEEEEEEE-CCCTTSS--EE
T ss_pred             eEEEEEEccCCCCCCcCcccceeEecccHHHHhCCCCCcccccCCceeEEEEECCCCccceeEEEEEEcccccCCCcCce
Confidence            35899999999999764    799999999999998766 5567889999999877  568899999976      5667


Q ss_pred             eec--cchhhhhhccCCCCCCEEEEE
Q 004489          225 LLT--TGWSAFVNKKKLVSGDAVLFL  248 (749)
Q Consensus       225 lLT--tGWs~FV~~K~L~aGD~VvF~  248 (749)
                      .||  ++-..|.+..  ..||-+||.
T Consensus        87 RIT~~G~~~~~~~~~--~tGaL~vla  110 (156)
T PF09217_consen   87 RITRFGRGFPLQNPE--NTGALLVLA  110 (156)
T ss_dssp             EEE---TTSGGG-GG--GTT-EEEEE
T ss_pred             EEeeecCCCccCCcc--ccccEEEEE
Confidence            786  3433444432  478988887

All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry represents the N-terminal effector-binding domain of the type II restriction endonuclease EcoRII, which has a DNA recognition fold, allowing for binding to 5'-CCWGG sequences. It assumes a structure composed of an eight-stranded beta-sheet with the strands in the order of b2, b5, b4, b3, b7, b6, b1 and b8. They are mostly antiparallel to each other except that b3 is parallel to b7. Alternatively, it may also be viewed as consisting of two mini beta-sheets of four antiparallel beta-strands, sheet I from beta-strands b2, b5, b4, b3 and sheet II from strands b7, b6, b1, b8, folded into an open mixed beta-barrel with a novel topology. Sheet I has a simple Greek key motif while sheet II does not []. The domain represented by this entry is only found in bacterial proteins.; PDB: 3HQF_A 1NA6_A.

>PF03754 DUF313: Domain of unknown function (DUF313) ; InterPro: IPR005508 This is a family of proteins from Arabidopsis thaliana (Mouse-ear cress) with uncharacterised function

Probab=97.61  E-value=8.8e-05  Score=69.86  Aligned_cols=77  Identities=22%  Similarity=0.321  Sum_probs=60.9

Q ss_pred             eeEEEecccccCCCC-CceeeeccchhhcCCCCCC------------CCCCCceEEEEEeCCCCeEEEEEEEeCC---CC
Q 004489          159 HMFCKTLTASDTSTH-GGFSVPRRAAEDCFPPLDY------------SQQRPSQELVAKDLHGLEWRFRHIYRGQ---PR  222 (749)
Q Consensus       159 ~~F~K~LT~SDv~~~-grfsVPk~~Ae~~FPpLd~------------~~~~p~q~L~~~D~~G~~W~Fr~~yrg~---pr  222 (749)
                      .+|+|+|++||+..+ .||+||-..... ...|..            .....++.+.+.|..++.|..++..|..   .-
T Consensus        22 li~~K~L~~tDv~~~qsRLsmP~~qi~~-~dFLt~eE~~~i~~~~~~~~~~~Gv~V~lvdp~~~~~~m~lkkW~mg~~~~  100 (114)
T PF03754_consen   22 LIIEKTLFKTDVDPHQSRLSMPFNQIID-NDFLTEEEKRIIKEEKKNNDKKKGVEVILVDPSLRKWTMRLKKWNMGNGTS  100 (114)
T ss_pred             EEEeeeecccCCCCCCceeeccHHHhcc-cccCCHHHHHHHHHhhccCcccCCceEEEECCcCcEEEEEEEEecccCCce
Confidence            589999999999965 899999876533 222321            1234578899999999999999999965   56


Q ss_pred             ceeeccchhhhhhc
Q 004489          223 RHLLTTGWSAFVNK  236 (749)
Q Consensus       223 rhlLTtGWs~FV~~  236 (749)
                      .|+|++||..+|++
T Consensus       101 ~YvL~~gWn~VV~~  114 (114)
T PF03754_consen  101 NYVLNSGWNKVVED  114 (114)
T ss_pred             EEEEEcChHhhccC
Confidence            79999999999864

>PF02309 AUX_IAA: AUX/IAA family; InterPro: IPR003311 The Aux/IAA family of genes are key regulators of auxin-modified gene expression []

Probab=94.77  E-value=0.0081  Score=61.97  Aligned_cols=22  Identities=9%  Similarity=0.027  Sum_probs=0.0

Q ss_pred             CCceeEEeecccceeeeeeccC
Q 004489          728 GSNCTNVSNHCAVRDMLFDIAL  749 (749)
Q Consensus       728 ~rsctKV~~qg~~vgRavDlt~  749 (749)
                      ++.|+||+|||.+|||.|||+.
T Consensus       108 ~~~~vKV~mdG~~igRkVDL~~  129 (215)
T PF02309_consen  108 SRSYVKVNMDGVPIGRKVDLSA  129 (215)
T ss_dssp             ----------------------
T ss_pred             CCceeEEEecCcccceecCHHH
Confidence            4899999999999999999974

The plant hormone auxin (indole-3-acetic acid, IAA) regulates diverse cellular and developmental responses in plants, including cell division, expansion, differentiation and patterning of embryo responses []. Auxin can regulate the gene expression of several families, including GH3 and SAUR, as well as Aux/IAA itself. The Aux/IAA proteins act as repressors of auxin-induced gene expression, possibly through modulating the activity of DNA-binding auxin response factors (ARFs) (IPR010525 from INTERPRO). Aux/IAA and ARF are thought to interact through C-terminal protein-protein interaction domains found in both Aux/IAA and ARF. Recent evidence suggests that Aux/IAA proteins can also mediate light responses []. Some members of the AUX/IAA family are longer and contain an N-terminal DNA binding domain [] and may have an early function in the establishment of vascular and body patterns in embryonic and post-embryonic development in some plants.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2P1N_F 2P1Q_C 2P1O_C.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	749
1wid_A	130	Solution Structure Of The B3 Dna-Binding Domain Of		5e-10

>pdb|1WID|A Chain A, Solution Structure Of The B3 Dna-Binding Domain Of Rav1 Length = 130

Iteration: 1
 Score = 63.5 bits (153), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 36/103 (34%), Positives = 54/103 (52%), Gaps = 2/103 (1%)
Query: 160 MFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGLEWRFRHIYRG 219
           +F K +T SD        +P+  AE  FP    +       L  +D++G  WRFR+ Y  
Sbjct: 13  LFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYWN 72
Query: 220 QPRRHLLTTGWSAFVNKKKLVSGDAVLFLR--GEDGELRLGIR 260
             + ++LT GWS FV +K L +GD V F R  G+D +L +G +
Sbjct: 73  SSQSYVLTKGWSRFVKEKNLRAGDVVSFSRSNGQDQQLYIGWK 115

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	749
1wid_A	130	DNA-binding protein RAV1; DNA-binding domain, stru	3e-38

>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2 Length = 130

 Score =  137 bits (346), Expect = 3e-38
 Identities = 37/118 (31%), Positives = 55/118 (46%), Gaps = 2/118 (1%)

Query: 158 PHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGLEWRFRHIY 217
             +F K +T SD        +P+  AE  FP    +       L  +D++G  WRFR+ Y
Sbjct: 11  EALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSY 70

Query: 218 RGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLRGEDGELRLGI--RRAPHVKSGATFPS 273
               + ++LT GWS FV +K L +GD V F R    + +L I  +        A+ PS
Sbjct: 71  WNSSQSYVLTKGWSRFVKEKNLRAGDVVSFSRSNGQDQQLYIGWKSRSGSDLDASGPS 128

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	749
d1wida_	117	b.142.1.2 (A:) DNA-binding protein RAV1 {Thale cre	5e-37
d1na6a1	175	b.142.1.1 (A:4-178) Restriction endonuclease EcoRI	1e-27
d1yela1	102	b.142.1.2 (A:1-102) At1g16640 {Thale cress (Arabid	9e-13

>d1wida_ b.142.1.2 (A:) DNA-binding protein RAV1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 117

class: All beta proteins
fold: DNA-binding pseudobarrel domain
superfamily: DNA-binding pseudobarrel domain
family: B3 DNA binding domain
domain: DNA-binding protein RAV1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  132 bits (333), Expect = 5e-37
 Identities = 37/110 (33%), Positives = 55/110 (50%), Gaps = 2/110 (1%)

Query: 156 STPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGLEWRFRH 215
           S   +F K +T SD        +P+  AE  FP    +       L  +D++G  WRFR+
Sbjct: 2   SAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRY 61

Query: 216 IYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLR--GEDGELRLGIRRAP 263
            Y    + ++LT GWS FV +K L +GD V F R  G+D +L +G +   
Sbjct: 62  SYWNSSQSYVLTKGWSRFVKEKNLRAGDVVSFSRSNGQDQQLYIGWKSRS 111

>d1na6a1 b.142.1.1 (A:4-178) Restriction endonuclease EcoRII, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 175

class: All beta proteins
fold: DNA-binding pseudobarrel domain
superfamily: DNA-binding pseudobarrel domain
family: Type II restriction endonuclease effector domain
domain: Restriction endonuclease EcoRII, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score =  108 bits (270), Expect = 1e-27
 Identities = 22/113 (19%), Positives = 38/113 (33%), Gaps = 13/113 (11%)

Query: 155 SSTPHMFCKTLTASDTSTHG----GFSVPRRAAEDCFPPLDYSQQR-PSQELVAK--DLH 207
                ++ K L+A+DT   G    G  +P    E  FP ++++++  PS  L A      
Sbjct: 12  CENYFVYIKRLSANDTGATGGHQVGLYIPSGIVEKLFPSINHTRELNPSVFLTAHVSSHD 71

Query: 208 GLEWRFRHIYRGQPRR------HLLTTGWSAFVNKKKLVSGDAVLFLRGEDGE 254
             +   R IY              +T        +    +G   L     D +
Sbjct: 72  CPDSEARAIYYNSAHFGKTRNEKRITRWGRGSPLQDPENTGALTLLAFKLDEQ 124

>d1yela1 b.142.1.2 (A:1-102) At1g16640 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 102

class: All beta proteins
fold: DNA-binding pseudobarrel domain
superfamily: DNA-binding pseudobarrel domain
family: B3 DNA binding domain
domain: At1g16640
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 63.0 bits (153), Expect = 9e-13
 Identities = 21/107 (19%), Positives = 32/107 (29%), Gaps = 12/107 (11%)

Query: 153 AKSSTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGLEWR 212
           A +       K   +  +S      +P    E    P           +   D  G  W 
Sbjct: 2   ADTGEVQFM-KPFISEKSSKS--LEIPLGFNEYFPAPF-------PITVDLLDYSGRSWT 51

Query: 213 FRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLRGEDGELRLGI 259
            R   + +  +  LT GW  FV    L  G  + F+   D    + I
Sbjct: 52  VR--MKKRGEKVFLTVGWENFVKDNNLEDGKYLQFIYDRDRTFYVII 96

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	749
d1wida_	117	DNA-binding protein RAV1 {Thale cress (Arabidopsis	99.94
d1na6a1	175	Restriction endonuclease EcoRII, N-terminal domain	99.84
d1yela1	102	At1g16640 {Thale cress (Arabidopsis thaliana) [Tax	99.44

>d1wida_ b.142.1.2 (A:) DNA-binding protein RAV1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: DNA-binding pseudobarrel domain
superfamily: DNA-binding pseudobarrel domain
family: B3 DNA binding domain
domain: DNA-binding protein RAV1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.94  E-value=2.1e-26  Score=184.34  Aligned_cols=109  Identities=32%  Similarity=0.533  Sum_probs=101.8

Q ss_pred             CCEEEEEECCCCCCCCCCCEEEECCCHHHCCCCCCCCCCCCCEEEEEEECCCCEEEEEEEEECCCCCEEECCCHHHHHHC
Q ss_conf             77049996463559998932460121301199999889999519999968998499999991999721223321325301
Q 004489          157 TPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGLEWRFRHIYRGQPRRHLLTTGWSAFVNK  236 (749)
Q Consensus       157 ~~~~F~K~LT~SDv~~~grlsVPk~~Ae~~FPpLd~~~~~p~q~L~~~D~~G~~W~Fr~~yrg~prr~lLTtGWs~FV~~  236 (749)
                      ..++|.|+||+|||++++||+||+.++++|||+++...+.++++|.+.|.+|++|.|+|+||++.++|+|++||..||++
T Consensus         3 ~~~iF~K~Lt~sDv~~~~rL~iP~~~~~~~lp~~~~~~~~~~~~~~~~d~~g~~W~~~~~~~~~~~~~~l~~GW~~Fv~~   82 (117)
T d1wida_           3 AEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYWNSSQSYVLTKGWSRFVKE   82 (117)
T ss_dssp             CEEEEEEECCTTTTSSSCCEEECHHHHTTTSCCCSSCCSSCCEEEEEEETTTEEEEEEEEEETTTTEEEEESSHHHHHHH
T ss_pred             CCEEEEEEECCHHCCCCCEEEECHHHHHHHCCCCCCCCCCCCEEEEEEECCCCEEEEEEEEECCCCCEEEECCHHHHHHH
T ss_conf             76479999111200898889977899997389543456777079999959999999999998899834774577998887


Q ss_pred             CCCCCCCEEEEEEC--CCCCEEEEEEECCCC
Q ss_conf             69988989999866--898489999976787
Q 004489          237 KKLVSGDAVLFLRG--EDGELRLGIRRAPHV  265 (749)
Q Consensus       237 K~L~aGD~VvF~R~--~~G~l~vgIRRa~~~  265 (749)
                      |+|++||.|+|++.  ++++++|++||+...
T Consensus        83 ~~Lk~GD~~~F~~~~~~~~~~~i~~r~~~~~  113 (117)
T d1wida_          83 KNLRAGDVVSFSRSNGQDQQLYIGWKSRSGS  113 (117)
T ss_dssp             TTCCTTCEEEEEECCSSSCCEEEEEECCCSC
T ss_pred             CCCCCCCEEEEEEEECCCCEEEEEEEECCCC
T ss_conf             4999799999999818998899999999999

>d1na6a1 b.142.1.1 (A:4-178) Restriction endonuclease EcoRII, N-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: DNA-binding pseudobarrel domain
superfamily: DNA-binding pseudobarrel domain
family: Type II restriction endonuclease effector domain
domain: Restriction endonuclease EcoRII, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.84  E-value=1.2e-21  Score=154.02  Aligned_cols=108  Identities=21%  Similarity=0.258  Sum_probs=92.4

Q ss_pred             CCCCEEEEEECCCCCCCCCCC----EEEECCCHHHCCCCCCCCCC-CCCEEEEEE--ECCCCEEEEEEEEECC------C
Q ss_conf             897704999646355999893----24601213011999998899-995199999--6899849999999199------9
Q 004489          155 SSTPHMFCKTLTASDTSTHGG----FSVPRRAAEDCFPPLDYSQQ-RPSQELVAK--DLHGLEWRFRHIYRGQ------P  221 (749)
Q Consensus       155 ~~~~~~F~K~LT~SDv~~~gr----lsVPk~~Ae~~FPpLd~~~~-~p~q~L~~~--D~~G~~W~Fr~~yrg~------p  221 (749)
                      +++.++|+|+||+|||+++|+    |+|||++||.+||+|++.+. .|.|.|.++  |.+|++|+|||||||+      .
T Consensus        12 ~~~~~~F~K~LtasD~g~tg~HQaG~~IPK~~ae~~FP~l~~~~e~nP~~~l~~~i~d~~g~~w~fR~iYyn~~~~ggTR   91 (175)
T d1na6a1          12 CENYFVYIKRLSANDTGATGGHQVGLYIPSGIVEKLFPSINHTRELNPSVFLTAHVSSHDCPDSEARAIYYNSAHFGKTR   91 (175)
T ss_dssp             HSSEEEEEEECCHHHHTCC---CCCCCCCHHHHHHHCGGGCCCSSSSCEEEEEEEESSSCCCCEEEEEEEECGGGTTSCC
T ss_pred             CCCEEEEEEECCCCCCCCCCCCCCEEEECHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEEEECCCCCCCCC
T ss_conf             88628999871502134458765215602788987399977445568872588887528998568999997885678853


Q ss_pred             CCEEECCCHHHHHHCCCCCCCCEEEEEEC--CC--CCEEEEEEEC
Q ss_conf             72122332132530169988989999866--89--8489999976
Q 004489          222 RRHLLTTGWSAFVNKKKLVSGDAVLFLRG--ED--GELRLGIRRA  262 (749)
Q Consensus       222 rr~lLTtGWs~FV~~K~L~aGD~VvF~R~--~~--G~l~vgIRRa  262 (749)
                      ..|.||.+|..|+..+.+.+||.++|.+.  ++  ...++.|-.-
T Consensus        92 neyRiT~~g~~~~~~~~~n~G~l~i~af~~~~~~~~~~~~~vwvc  136 (175)
T d1na6a1          92 NEKRITRWGRGSPLQDPENTGALTLLAFKLDEQGGDCKEVNIWVC  136 (175)
T ss_dssp             CEEEEECCCTTSGGGCGGGTTCEEEEEEECCTTSCCCCEEEEEEC
T ss_pred             CCEEEEECCCCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEEEEE
T ss_conf             537997515666544755655479999606889872268999985

>d1yela1 b.142.1.2 (A:1-102) At1g16640 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: DNA-binding pseudobarrel domain
superfamily: DNA-binding pseudobarrel domain
family: B3 DNA binding domain
domain: At1g16640
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.44  E-value=5e-13  Score=98.73  Aligned_cols=93  Identities=24%  Similarity=0.384  Sum_probs=80.4

Q ss_pred             EEEEEECCCCCCCCCCCEEEECCCHHHCCCCCCCCCCCCCEEEEEEECCCCEEEEEEEEECCCCCEEECCCHHHHHHCCC
Q ss_conf             04999646355999893246012130119999988999951999996899849999999199972122332132530169
Q 004489          159 HMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGLEWRFRHIYRGQPRRHLLTTGWSAFVNKKK  238 (749)
Q Consensus       159 ~~F~K~LT~SDv~~~grlsVPk~~Ae~~FPpLd~~~~~p~q~L~~~D~~G~~W~Fr~~yrg~prr~lLTtGWs~FV~~K~  238 (749)
                      .-|.|+|.+++++.  +|.||+.++..+.+.+.       .++.++|..|+.|.+++..+  .++..|+.||..||++++
T Consensus         7 ~~Ffkv~~~~~~~~--~L~IP~~F~~~~~~~~~-------~~i~L~d~~G~~W~v~~~~~--~~~~~~~~GW~~Fv~~n~   75 (102)
T d1yela1           7 VQFMKPFISEKSSK--SLEIPLGFNEYFPAPFP-------ITVDLLDYSGRSWTVRMKKR--GEKVFLTVGWENFVKDNN   75 (102)
T ss_dssp             EEEEEECCHHHHTT--CEECCHHHHTTCCCCCC-------SEEEEEETTSCEEEEEEEEE--TTEEEECTTHHHHHHHHT
T ss_pred             CEEEEEECCCCCCC--CEECCHHHHHHCCCCCC-------CEEEEECCCCCEEEEEEEEE--CCEEEECCCHHHHHHHCC
T ss_conf             75999986746689--88789999976797799-------78999919999999999996--886998618799999769


Q ss_pred             CCCCCEEEEEECCCCCEEEEEEEC
Q ss_conf             988989999866898489999976
Q 004489          239 LVSGDAVLFLRGEDGELRLGIRRA  262 (749)
Q Consensus       239 L~aGD~VvF~R~~~G~l~vgIRRa  262 (749)
                      |++||.|+|...++..+.|.|...
T Consensus        76 L~~GD~~vF~~~~~~~f~V~If~~   99 (102)
T d1yela1          76 LEDGKYLQFIYDRDRTFYVIIYGH   99 (102)
T ss_dssp             CCTTCEEEEEECSSSEEEEEEECS
T ss_pred             CCCCCEEEEEECCCCEEEEEEECC
T ss_conf             886989999993896899999689