Citrus Sinensis ID: 004524

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------

MDPRLRGFPGSGNGIQLSNQPVSVFPNQNLVAGRFENIFLDQRFRDCRYRQPDPTPINVVSSSTVNHEEDSPEDCDFSDAVLRYINQMLMEEDIEEKNCMLQESLDLQAAEKSFYDVLGKKYPPSPDHSLTYFHQNGESPDGDTSRNLHGYIYGGSDVSSYLIDNNFIQNSGEYFNSQLQSLPLSTMPQSSYSSSNSVITSVDGLVDSPSSSLQLPDWNNESQSIWQFRKGVEEANKFLPSENELFVNLEANRLSSWVPKGETNEVAVKEEKEEVEDVSSNGSRGRKNPYREDVDLEEERSSKQAAIYSESPLRTEMFDMVLLCSGGQSPTVALREALKNASSKTVQQKGQSKGSNGAKGRGKKQSGKKEVVDLRSLLIHCAQAVAADDRRSAHEFLKQIRQHSSPFGDGNQRLAKCFADGLEARLAGTGSQIYKGFVNKRTSAADILKAYQLYLAACPFRKLSNFTANKTIMSLAQNSMRLHIIDFGILYGFQWPTFIQRISMRPGGPPKLRITGIEFPQPGFRPAERVEETGRRLADYAKDFNVPFEYNAIAKRWDTIQLEELKIDRDEVLVVNCLYRAKNLLDETIAVDSSRNIFLNFIRKINPHMFIHGITNGAYNAPFFVTRFREALFHFSAMFDMLETIVPREDRERMVIEKDIFGREALNVVACEGWERVERPETYKQWQVRNLRAGFVQLPLDRDIVKRATDRVRSGYHKDFVIDEDNRWLLQGWKGRIIYALSAWKPV

ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccHHHHHHHHccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccEEEEEcccccccccHHHHHHHHccccccccEEEEEccccccccccHHHHHHHHHHHHHHHHHcccccEEEEEcccccccccccccccccccEEEEEHHHcccccccccccccHHHHHHHHHHHHcccEEEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHcccccccccHHHHHHHHHHHHcccccccEEEEcccEEEEEEcccEEEEEEEEEEc

ccccccccccccccEEccccccEcccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcHHcccccccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcHHHHHHHccccccEEEEcccccccccccccccccEEEEccccccccccccccccccccccccccHHccccccccEEEcccccHHHHHHHEEEcccccccHHHHHHHccccccccccccccccccccccccEEEcccccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccccHHHHHHccccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHccccEEEEEEcccccccHHHHHHHHHHcccccccEEEEEcccccccccccHHHHHHHHHHHHHHHHHccccEEEHHHHccHccccHHHcccccccEEEEEHHHHHccccccccccccHHHHHHHHHHHccccEEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHEccccHHcccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHccccEEEccccEEEEcccccEEEEEEccccc

mdprlrgfpgsgngiqlsnqpvsvfpnqnlvagrfenifldqrfrdcryrqpdptpinvvssstvnheedspedcdfsDAVLRYINQMLMEEDIEEKNCMLQESLDLQAAEKSFYDVlgkkyppspdhsltyfhqngespdgdtsrnlhgyiyggsdvssylidnnfiqnsgEYFNSQlqslplstmpqssysssnsvitsvdglvdspssslqlpdwnnesQSIWQFRKGVEeankflpseneLFVNLEAnrlsswvpkgetnevaVKEEKEEvedvssngsrgrknpyredvdleeersskqaaiysesplrteMFDMVLlcsggqspTVALREALKNAssktvqqkgqskgsngakgrgkkqsgkkEVVDLRSLLIHCAQAVAADDRRSAHEFLKQIRqhsspfgdgnQRLAKCFADGLEARLAGTGSQIYKGFVNKRTSAADILKAYQLYLAacpfrklsnftANKTIMSLAQNSMRLHIIDFGilygfqwptfiqrismrpggppklritgiefpqpgfrpaerVEETGRRLADyakdfnvpfeyNAIAKRWDTIQLEELKIDRDEVLVVNCLYRAKNLldetiavdssRNIFLNFIRkinphmfihgitngaynapfFVTRFREALFHFSAMFDMLEtivpredrermVIEKDIFGREALNVVAcegwerverpetykQWQVRNLRAgfvqlpldrdIVKRATDRvrsgyhkdfvidedNRWLLQGWKGRIIYALSAWKPV

mdprlrgfpgsgngiqlsnqpvSVFPNQNLVAGRFENIFLDQRFRDCRYrqpdptpinvvssstvnheedspedcdfSDAVLRYINQMLMEEDIEEKNCMLQESLDLQAAEKSFYDVLGKKYPPSPDHSLTYFHQNGESPDGDTSRNLHGYIYGGSDVSSYLIDNNFIQNSGEYFNSQLQSLPLSTMPQSSYSSSNSVITSVDGLVDSPSSSLQLPDWNNESQSIWQFRKGVEEANKFLPSENELFVNLEAnrlsswvpkgetnevavkeekeevedvssngsrgrknpyredvdleeersskqaaiysesplrTEMFDMVLLCSGGQSPTVALREALKNassktvqqkgqskgsngakgrgkkqsgkKEVVDLRSLLIHCAQAVAADDRRSAHEFLKQIRqhsspfgdgnqRLAKCFADGLEARLAGTGSQIYKGFVNKRTSAADILKAYQLYLAACPFRKLSNFTANKTIMSLAQNSMRLHIIDFGILYGFQWPTFIQRISMRPGGPPKLRItgiefpqpgfrpaeRVEETGRRLADyakdfnvpfeynaIAKRWDTIQLEelkidrdevLVVNCLYRAKNlldetiavdssRNIFLNFIRKINPHMFIHGITNGAYNAPFFVTRFREALFHFSAMFDMLEtivpredreRMVIEkdifgrealnvvacegwerverpetykqwqvrnlragfvqlpldrdivkratdrvrsgyhkdfvidednrwllqGWKGRIIYALSAWKPV

MDPRLRGFPGSGNGIQLSNQPVSVFPNQNLVAGRFENIFLDQRFRDCRYRQPDPTPINVVSSSTVNHEEDSPEDCDFSDAVLRYINQMLMEEDIEEKNCMLQESLDLQAAEKSFYDVLGKKYPPSPDHSLTYFHQNGESPDGDTSRNLHGYIYGGSDVSSYLIDNNFIQNSGEYFNSQLQSLPLstmpqssysssnsvitsVDGLVDSPSSSLQLPDWNNESQSIWQFRKGVEEANKFLPSENELFVNLEANRLSSWVPKGETNevavkeekeevedvSSNGSRGRKNPYREDVDLEEERSSKQAAIYSESPLRTEMFDMVLLCSGGQSPTVALREALKNASSKTVQQKGQSKGSNGAKGRGKKQSGKKEVVDLRSLLIHCAQAVAADDRRSAHEFLKQIRQHSSPFGDGNQRLAKCFADGLEARLAGTGSQIYKGFVNKRTSAADILKAYQLYLAACPFRKLSNFTANKTIMSLAQNSMRLHIIDFGILYGFQWPTFIQRISMRPGGPPKLRITGIEFPQPGFRPAERVEETGRRLADYAKDFNVPFEYNAIAKRWDTIQLEELKIDRDEVLVVNCLYRAKNLLDETIAVDSSRNIFLNFIRKINPHMFIHGITNGAYNAPFFVTRFREALFHFSAMFDMLETIVPREDRERMVIEKDIFGREALNVVACEGWERVERPETYKQWQVRNLRAGFVQLPLDRDIVKRATDRVRSGYHKDFVIDEDNRWLLQGWKGRIIYALSAWKPV

*********************VSVFPNQNLVAGRFENIFLDQRFRDCRYR************************CDFSDAVLRYINQMLMEEDIEEKNCMLQESLDLQAAEKSFYDVLG****************************LHGYIYGGSDVSSYLIDNNFIQNSGEYF*************************************************IWQFRKGVEEANKFLPSENELFVNLEANRLSSW**********************************************************EMFDMVLLCS*********************************************VVDLRSLLIHCAQAVAAD*******FL**************QRLAKCFADGLEARLAGTGSQIYKGFVNKRTSAADILKAYQLYLAACPFRKLSNFTANKTIMSLAQNSMRLHIIDFGILYGFQWPTFIQRISMRP****KLRITGIEF**************GRRLADYAKDFNVPFEYNAIAKRWDTIQLEELKIDRDEVLVVNCLYRAKNLLDETIAVDSSRNIFLNFIRKINPHMFIHGITNGAYNAPFFVTRFREALFHFSAMFDMLETIVPREDRERMVIEKDIFGREALNVVACEGWERVERPETYKQWQVRNLRAGFVQLPLDRDIVKRATDRVRSGYHKDFVIDEDNRWLLQGWKGRIIYALSAW***

********PGSGNGIQLSNQPVS***********FENIF***************************************DAVLRYINQMLMEEDIEEKNCMLQESLDLQAAEKSFYD**************************************************FIQN**************************************************ESQSIWQFRKGVEEANKFLPSENEL*V****************************************************************PLRTEMFDMVLLCSGGQ*********************************************LRSLLIHCAQAVAADDRRSAHEFLKQIRQHSS***DGNQRLAKCFADGLEARLAGTGS************AADILKAYQLYLAACPFRKLSNFTANKTIMSLAQNSMRLHIIDFGILYGFQWPTFIQRISM*PGGPPKLRITGIEFPQPGFRPAERVEETGRRLADYAKDFNVPFEYNAIAKRWDTIQLEELKIDRDEVLVVNCLYRAKNLLDETIAVDSSRNIFLNFIRKINPHMFIHGITNGAYNAPFFVTRFREALFHFSAMFDMLETIVPREDRERMVIEKDIFGREALNVVACEGWERVERPETYKQWQVRNLRAGFVQLPLDRDIVKRATDRVRSGYHKDFVIDEDNRWLLQGWKGRIIYALSAWKPV

********PGSGNGIQLSNQPVSVFPNQNLVAGRFENIFLDQRFRDCRYRQPDPTPINVV**************CDFSDAVLRYINQMLMEEDIEEKNCMLQESLDLQAAEKSFYDVLGKKYPPSPDHSLTYFHQNGESPDGDTSRNLHGYIYGGSDVSSYLIDNNFIQNSGEYFNSQLQSLP**************VITSVDGLVDSPSSSLQLPDWNNESQSIWQFRKGVEEANKFLPSENELFVNLEANRLSSWVPKGETNEVA*******************KNPYRE**********KQAAIYSESPLRTEMFDMVLLCSGGQSPTVALREAL*******************************EVVDLRSLLIHCAQAVAADDRRSAHEFLKQIRQHSSPFGDGNQRLAKCFADGLEARLAGTGSQIYKGFVNKRTSAADILKAYQLYLAACPFRKLSNFTANKTIMSLAQNSMRLHIIDFGILYGFQWPTFIQRISMRPGGPPKLRITGIEFPQPGFRPAERVEETGRRLADYAKDFNVPFEYNAIAKRWDTIQLEELKIDRDEVLVVNCLYRAKNLLDETIAVDSSRNIFLNFIRKINPHMFIHGITNGAYNAPFFVTRFREALFHFSAMFDMLETIVPREDRERMVIEKDIFGREALNVVACEGWERVERPETYKQWQVRNLRAGFVQLPLDRDIVKRATDRVRSGYHKDFVIDEDNRWLLQGWKGRIIYALSAWKPV

****LRGFPGSGNGIQLSNQPVSVFPNQNLVAGRFENIFLDQRFRDCRYRQPDPT******************DCDFSDAVLRYINQMLMEEDIEEKNCMLQESLDLQAAEKSFYDVLGKKYP*****************************************N*******EYFNSQL************************GLVDSPSSSLQLPDWNNESQSIWQFRKGVEEANKFLPSENELFVNLEANRL****************************************D***ERSSKQAAIYSESPLRTEMFDMVLLCSGGQS*******************************RGKKQSGKKEVVDLRSLLIHCAQAVAADDRRSAHEFLKQIRQHSSPFGDGNQRLAKCFADGLEARLAGTGSQIYKGFVNKRTSAADILKAYQLYLAACPFRKLSNFTANKTIMSLAQNSMRLHIIDFGILYGFQWPTFIQRISMRPGGPPKLRITGIEFPQPGFRPAERVEETGRRLADYAKDFNVPFEYNAIAKRWDTIQLEELKIDRDEVLVVNCLYRAKNLLDETIAVDSSRNIFLNFIRKINPHMFIHGITNGAYNAPFFVTRFREALFHFSAMFDMLETIVPREDRERMVIEKDIFGREALNVVACEGWERVERPETYKQWQVRNLRAGFVQLPLDRDIVKRATDRVRSGYHKDFVIDEDNRWLLQGWKGRIIYALSAWKPV

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		747	2.2.26 [Sep-21-2011]
O80933		718	Scarecrow-like protein 9	yes	no	0.868	0.903	0.568	0.0
Q9XE58		769	Scarecrow-like protein 14	no	no	0.864	0.840	0.492	1e-180
P0C883		694	Scarecrow-like protein 33	no	no	0.887	0.955	0.446	1e-168
P0C884		630	Scarecrow-like protein 34	no	no	0.791	0.938	0.436	1e-140
Q3EDH0		695	Scarecrow-like protein 31	no	no	0.908	0.976	0.404	1e-136
Q9LTI5		610	Scarecrow-like protein 11	no	no	0.610	0.747	0.494	1e-132
Q9SNB8		583	Scarecrow-like protein 30	no	no	0.582	0.746	0.5	1e-126
Q9M0M5		529	Scarecrow-like protein 13	no	no	0.500	0.706	0.330	7e-59
Q9LDL7		490	Scarecrow-like transcript	no	no	0.496	0.757	0.328	1e-58
Q8GVE1		544	Chitin-inducible gibberel	no	no	0.496	0.681	0.325	8e-58

>sp\|O80933\|SCL9_ARATH Scarecrow-like protein 9 OS=Arabidopsis thaliana GN=SCL9 PE=2 SV=1	Back alignment and function desciption

 Score =  751 bits (1939), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/703 (56%), Positives = 479/703 (68%), Gaps = 54/703 (7%)

Query: 55  TPINVVSSSTVNHEEDSPEDCDFSDAVLRYINQMLMEEDIEEKNCMLQESLDLQAAEKSF 114
            P N V       EED  +D DFSDAVL YI+QML EED+++K CMLQESLDL+AAE+S 
Sbjct: 55  APENSVFIREEEEEEDPADDFDFSDAVLGYISQMLNEEDMDDKVCMLQESLDLEAAERSL 114

Query: 115 YDVLGKKYPPSPDHSLTYFHQNGESPDGDTSRNLHGYIYGGSDVSSYLIDNNFIQNSGEY 174
           Y+ +GKKYPPSP+ +L +  +N E+ D     N     Y G D   +   N  I+     
Sbjct: 115 YEAIGKKYPPSPERNLAFAERNSENLDRVVPGN-----YTGGDCIGF--GNGGIKPLSSG 167

Query: 175 FNSQLQSLPLSTMPQSSYSSSNSVITSVDGLVDSPSSSLQLPDWNNES-QSIWQFRKGVE 233
           F    ++ P S     S   SN +IT     +D  S +      N E+ QS+W FR+ +E
Sbjct: 168 FTLDFRN-PQSCSSILSVPQSNGLITIYGDGIDESSKN------NRENHQSVWLFRREIE 220

Query: 234 EANKFLPSENELFVNLEANRLSSWVPKGETNEVAVKEEKEEVEDVSSNGSRGRKNPYRED 293
           EAN+F P ENEL VN             E N V                S+ RKN  R++
Sbjct: 221 EANRFNPEENELIVNFR-----------EENCV----------------SKARKNSSRDE 253

Query: 294 VDLEEERSSKQAAIYSESPLRTEMFDMVLL-CSGGQSPTV--ALREALKNASSKTVQQKG 350
           + +EEERSSK  A++ E  LR+++ D +L+   GG+S     ALR+ LK    K      
Sbjct: 254 ICVEEERSSKLPAVFGEDILRSDVVDKILVHVPGGESMKEFNALRDVLKKGVEKKKASDA 313

Query: 351 QSKGSNGAKGRGKK-------QSGKKEVVDLRSLLIHCAQAVAADDRRSAHEFLKQIRQH 403
           Q            +       Q+GKKEVVDLRSLLIHCAQAVAADDRR A + LKQIR H
Sbjct: 314 QGGKRRARGRGRGRGRGGGGGQNGKKEVVDLRSLLIHCAQAVAADDRRCAGQLLKQIRLH 373

Query: 404 SSPFGDGNQRLAKCFADGLEARLAGTGSQIYKGFVNKRTSAADILKAYQLYLAACPFRKL 463
           S+PFGDGNQRLA CFA+GLEARLAGTGSQIYKG V+K  SAA +LKA+QL+LA CPFRKL
Sbjct: 374 STPFGDGNQRLAHCFANGLEARLAGTGSQIYKGIVSKPRSAAAVLKAHQLFLACCPFRKL 433

Query: 464 SNFTANKTIMSLAQNSMRLHIIDFGILYGFQWPTFIQRISMRPGGPPKLRITGIEFPQPG 523
           S F  NKTI  L  NS R+H+IDFGILYGFQWPT I R SM   G PK+RITGIEFPQPG
Sbjct: 434 SYFITNKTIRDLVGNSQRVHVIDFGILYGFQWPTLIHRFSMY--GSPKVRITGIEFPQPG 491

Query: 524 FRPAERVEETGRRLADYAKDFNVPFEYNAIAKRWDTIQLEELKIDRDEVLVVNCLYRAKN 583
           FRPA+RVEETG+RLA YAK F VPFEY AIAK+WD IQLE+L IDRDE+ VVNCLYRA+N
Sbjct: 492 FRPAQRVEETGQRLAAYAKLFGVPFEYKAIAKKWDAIQLEDLDIDRDEITVVNCLYRAEN 551

Query: 584 LLDETIAVDSSRNIFLNFIRKINPHMFIHGITNGAYNAPFFVTRFREALFHFSAMFDMLE 643
           L DE++ V+S R+  LN I KINP +F+ GI NGAYNAPFFVTRFREALFHFS++FDMLE
Sbjct: 552 LHDESVKVESCRDTVLNLIGKINPDLFVFGIVNGAYNAPFFVTRFREALFHFSSIFDMLE 611

Query: 644 TIVPREDRERMVIEKDIFGREALNVVACEGWERVERPETYKQWQVRNLRAGFVQLPLDRD 703
           TIVPRED ERM +E ++FGREALNV+ACEGWERVERPETYKQW VR +R+G VQ+P D  
Sbjct: 612 TIVPREDEERMFLEMEVFGREALNVIACEGWERVERPETYKQWHVRAMRSGLVQVPFDPS 671

Query: 704 IVKRATDRVRSGYHKDFVIDEDNRWLLQGWKGRIIYALSAWKP 746
           I+K +  +V + YHKDFVID+DNRWLLQGWKGR + ALS WKP
Sbjct: 672 IMKTSLHKVHTFYHKDFVIDQDNRWLLQGWKGRTVMALSVWKP 714

Probable transcription factor involved in plant development.
Arabidopsis thaliana (taxid: 3702)

>sp\|Q9XE58\|SCL14_ARATH Scarecrow-like protein 14 OS=Arabidopsis thaliana GN=SCL14 PE=2 SV=2	Back alignment and function description

>sp\|P0C883\|SCL33_ARATH Scarecrow-like protein 33 OS=Arabidopsis thaliana GN=SCL33 PE=3 SV=1	Back alignment and function description

>sp\|P0C884\|SCL34_ARATH Scarecrow-like protein 34 OS=Arabidopsis thaliana GN=SCL34 PE=3 SV=1	Back alignment and function description

>sp\|Q3EDH0\|SCL31_ARATH Scarecrow-like protein 31 OS=Arabidopsis thaliana GN=SCL31 PE=2 SV=3	Back alignment and function description

>sp\|Q9LTI5\|SCL11_ARATH Scarecrow-like protein 11 OS=Arabidopsis thaliana GN=SCL11 PE=2 SV=1	Back alignment and function description

>sp\|Q9SNB8\|SCL30_ARATH Scarecrow-like protein 30 OS=Arabidopsis thaliana GN=SCL30 PE=2 SV=1	Back alignment and function description

>sp\|Q9M0M5\|SCL13_ARATH Scarecrow-like protein 13 OS=Arabidopsis thaliana GN=SCL13 PE=2 SV=2	Back alignment and function description

>sp\|Q9LDL7\|PAT1_ARATH Scarecrow-like transcription factor PAT1 OS=Arabidopsis thaliana GN=PAT1 PE=2 SV=1	Back alignment and function description

>sp\|Q8GVE1\|CIGR2_ORYSJ Chitin-inducible gibberellin-responsive protein 2 OS=Oryza sativa subsp. japonica GN=CIGR2 PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		747
225440386		743	PREDICTED: scarecrow-like protein 9 [Vit	0.985	0.990	0.694	0.0
224087429		749	GRAS family transcription factor [Populu	0.991	0.989	0.714	0.0
255580307		740	conserved hypothetical protein [Ricinus	0.985	0.994	0.657	0.0
356566519		731	PREDICTED: scarecrow-like protein 9-like	0.973	0.994	0.637	0.0
449440329		760	PREDICTED: scarecrow-like protein 9-like	0.908	0.893	0.657	0.0
356506678		728	PREDICTED: scarecrow-like protein 9-like	0.958	0.983	0.632	0.0
356523159		728	PREDICTED: scarecrow-like protein 9-like	0.970	0.995	0.632	0.0
224098441		740	GRAS family transcription factor [Populu	0.983	0.993	0.571	0.0
147840506		746	hypothetical protein VITISV_042227 [Viti	0.994	0.995	0.562	0.0
359486620		746	PREDICTED: scarecrow-like protein 14-lik	0.994	0.995	0.564	0.0

>gi\|225440386\|ref\|XP_002267055.1\| PREDICTED: scarecrow-like protein 9 [Vitis vinifera]	Back alignment and taxonomy information

 Score = 1061 bits (2745), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 522/752 (69%), Positives = 612/752 (81%), Gaps = 16/752 (2%)

Query: 1   MDPRLRGFPGSGNGIQLSNQPVSVFPNQNLVAG-RFENIFLDQRFRDCRYRQPDPTPINV 59
           MDP  RGF  S NGIQL N+P S+  + NLVAG +FEN   D+ FR+ RY +PDP   N 
Sbjct: 3   MDPSRRGFSSSVNGIQLGNRPFSILSDHNLVAGAKFENSLFDRSFREVRYLKPDPASANT 62

Query: 60  VSSS-TVNHEEDSPEDCDFSDAVLRYINQMLMEEDIEEKNCMLQESLDLQAAEKSFYDVL 118
            S   +V+ EED   DCDFSD VL+YINQMLMEED+E++  MLQ+SLDLQAAEKSFY+VL
Sbjct: 63  ASDGLSVSPEED---DCDFSDEVLKYINQMLMEEDMEDQTYMLQQSLDLQAAEKSFYEVL 119

Query: 119 GKKYPPSPDHSLTYFHQNGESPDGDTSRNLHGYIYGGSDVSSYLIDNNFIQNSGEYFNSQ 178
           GKKYPPSPDH+L++  Q+ ESPD +   N   YI      S  L DN +IQ+  +   SQ
Sbjct: 120 GKKYPPSPDHNLSFADQSYESPDDNFPGNNSNYISSSGTSSGNLADNCWIQSPSDCNTSQ 179

Query: 179 LQSLPLSTMPQSSYSSSNSVITSVDGLVDSPSSSLQLPDWNNESQSIWQFRKGVEEANKF 238
           +Q+ P        +SSSNSV++++DGLVDSP+S+LQLPD  NESQS+WQF+KGVEEA+KF
Sbjct: 180 VQASP--------FSSSNSVVSTMDGLVDSPNSTLQLPDLYNESQSVWQFQKGVEEASKF 231

Query: 239 LPSENELFVNLEANRLSSWVPKGETNEVAVKEEKEEVEDVSSNGSRGRKNPYREDVDLEE 298
           LPS NELF NLE         KG  NEV VK E ++ E+ S +GSR RKNP RED+ LEE
Sbjct: 232 LPSGNELFFNLEVKASLPQGLKGGNNEVVVKSELKDEEEHSPSGSRVRKNPQREDIGLEE 291

Query: 299 ERSSKQAAIYSESPLRTEMFDMVLLCS--GGQSPTVALREALKNASSKTVQQK-GQSKGS 355
           ERS+KQAA+Y+ES LR+EMFDMVLLC+    +  +    EAL+N +S  +QQ+ GQ KGS
Sbjct: 292 ERSTKQAAVYTESTLRSEMFDMVLLCNRNNCKPHSSTPHEALQNETSSNLQQQNGQVKGS 351

Query: 356 NGAKGRGKKQSGKKEVVDLRSLLIHCAQAVAADDRRSAHEFLKQIRQHSSPFGDGNQRLA 415
           NG KGRGKKQSGKKEVVDLR+LLI CAQAVAADDRRSA+E LKQ+RQHSSPFGDGNQRLA
Sbjct: 352 NGGKGRGKKQSGKKEVVDLRTLLIQCAQAVAADDRRSANELLKQVRQHSSPFGDGNQRLA 411

Query: 416 KCFADGLEARLAGTGSQIYKGFVNKRTSAADILKAYQLYLAACPFRKLSNFTANKTIMSL 475
            CFADGLEARLAGTGSQIYKG ++K  SAADILKAY LY++ CPFRK+SNF +N++IM  
Sbjct: 412 HCFADGLEARLAGTGSQIYKGLISKGRSAADILKAYHLYVSVCPFRKMSNFFSNRSIMIR 471

Query: 476 AQNSMRLHIIDFGILYGFQWPTFIQRISMRPGGPPKLRITGIEFPQPGFRPAERVEETGR 535
           A+ + RLHIIDFGILYGFQWPTFIQR+S RPGGPPKLRITGIEFPQPGFRPAER+EETGR
Sbjct: 472 AEKATRLHIIDFGILYGFQWPTFIQRLSSRPGGPPKLRITGIEFPQPGFRPAERIEETGR 531

Query: 536 RLADYAKDFNVPFEYNAIAKRWDTIQLEELKIDRDEVLVVNCLYRAKNLLDETIAVDSSR 595
           RLA+YA  FNVPFEYNAIAK+W+TIQLEEL+IDRDE+LVVNCLYR + LLDET+AVDS R
Sbjct: 532 RLANYAASFNVPFEYNAIAKKWETIQLEELQIDRDELLVVNCLYRFETLLDETVAVDSPR 591

Query: 596 NIFLNFIRKINPHMFIHGITNGAYNAPFFVTRFREALFHFSAMFDMLETIVPREDRERMV 655
           NI LN I+KI P +FI GI NG+YNAPFFVTRFREALFHFSA FDMLET V RE+ ERM+
Sbjct: 592 NIVLNMIKKIRPDIFIQGIVNGSYNAPFFVTRFREALFHFSAQFDMLETTVLRENWERML 651

Query: 656 IEKDIFGREALNVVACEGWERVERPETYKQWQVRNLRAGFVQLPLDRDIVKRATDRVRSG 715
           IE++IFGREALNV+ACEGWERVERPETYKQWQ+RNLRAGFVQLPL+R+ +KRAT+RV + 
Sbjct: 652 IEREIFGREALNVIACEGWERVERPETYKQWQLRNLRAGFVQLPLNRETMKRATERVTTN 711

Query: 716 YHKDFVIDEDNRWLLQGWKGRIIYALSAWKPV 747
           YHKDFVIDED++W+LQGWKGRIIYALSAWKP 
Sbjct: 712 YHKDFVIDEDSQWMLQGWKGRIIYALSAWKPA 743

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|224087429\|ref\|XP_002308163.1\| GRAS family transcription factor [Populus trichocarpa] gi\|222854139\|gb\|EEE91686.1\| GRAS family transcription factor [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|255580307\|ref\|XP_002530982.1\| conserved hypothetical protein [Ricinus communis] gi\|223529434\|gb\|EEF31394.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

>gi\|356566519\|ref\|XP_003551478.1\| PREDICTED: scarecrow-like protein 9-like [Glycine max]	Back alignment and taxonomy information

>gi\|449440329\|ref\|XP_004137937.1\| PREDICTED: scarecrow-like protein 9-like [Cucumis sativus] gi\|449483649\|ref\|XP_004156649.1\| PREDICTED: scarecrow-like protein 9-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|356506678\|ref\|XP_003522103.1\| PREDICTED: scarecrow-like protein 9-like [Glycine max]	Back alignment and taxonomy information

>gi\|356523159\|ref\|XP_003530209.1\| PREDICTED: scarecrow-like protein 9-like [Glycine max]	Back alignment and taxonomy information

>gi\|224098441\|ref\|XP_002311175.1\| GRAS family transcription factor [Populus trichocarpa] gi\|222850995\|gb\|EEE88542.1\| GRAS family transcription factor [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|147840506\|emb\|CAN68327.1\| hypothetical protein VITISV_042227 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|359486620\|ref\|XP_002278317.2\| PREDICTED: scarecrow-like protein 14-like [Vitis vinifera]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		747
TAIR\|locus:2040701		718	AT2G37650 [Arabidopsis thalian	0.618	0.643	0.668	1.2e-199
TAIR\|locus:2025022		769	SCL14 "SCARECROW-like 14" [Ara	0.894	0.868	0.482	1.6e-164
TAIR\|locus:2025032		695	AT1G07520 "AT1G07520" [Arabido	0.680	0.730	0.474	5.2e-136
TAIR\|locus:2148293		610	AT5G59450 [Arabidopsis thalian	0.614	0.752	0.504	4.8e-131
TAIR\|locus:2075155		583	AT3G46600 [Arabidopsis thalian	0.540	0.692	0.529	1.5e-125
TAIR\|locus:2164783		490	PAT1 "AT5G48150" [Arabidopsis	0.496	0.757	0.328	1.4e-58
TAIR\|locus:2026982		593	SCL1 "AT1G21450" [Arabidopsis	0.534	0.672	0.306	1.8e-52
TAIR\|locus:2008076		597	SCL5 "AT1G50600" [Arabidopsis	0.497	0.623	0.324	5.6e-52
TAIR\|locus:2044973		413	SCL21 "AT2G04890" [Arabidopsis	0.488	0.883	0.327	9.2e-52
TAIR\|locus:2080345		653	SCR "SCARECROW" [Arabidopsis t	0.495	0.566	0.302	3.9e-45

TAIR\|locus:2040701 AT2G37650 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1630 (578.8 bits), Expect = 1.2e-199, Sum P(2) = 1.2e-199
 Identities = 317/474 (66%), Positives = 374/474 (78%)

Query:   283 SRGRKNPYREDVDLEEERSSKQAAIYSESPLRTEMFDMVLL-CSGGQSPTV--ALREALK 339
             S+ RKN  R+++ +EEERSSK  A++ E  LR+++ D +L+   GG+S     ALR+ LK
Sbjct:   243 SKARKNSSRDEICVEEERSSKLPAVFGEDILRSDVVDKILVHVPGGESMKEFNALRDVLK 302

Query:   340 NASSK---TVQQKGQSKGSNGAKGRGKK----QSGKKEVVDLRSLLIHCAQAVAADDRRS 392
                 K   +  Q G+ +     +GRG+     Q+GKKEVVDLRSLLIHCAQAVAADDRR 
Sbjct:   303 KGVEKKKASDAQGGKRRARGRGRGRGRGGGGGQNGKKEVVDLRSLLIHCAQAVAADDRRC 362

Query:   393 AHEFLKQIRQHSSPFGDGNQRLAKCFADGLEARLAGTGSQIYKGFVNKRTSAADILKAYQ 452
             A + LKQIR HS+PFGDGNQRLA CFA+GLEARLAGTGSQIYKG V+K  SAA +LKA+Q
Sbjct:   363 AGQLLKQIRLHSTPFGDGNQRLAHCFANGLEARLAGTGSQIYKGIVSKPRSAAAVLKAHQ 422

Query:   453 LYLAACPFRKLSNFTANKTIMSLAQNSMRLHIIDFGILYGFQWPTFIQRISMRPGGPPKL 512
             L+LA CPFRKLS F  NKTI  L  NS R+H+IDFGILYGFQWPT I R SM   G PK+
Sbjct:   423 LFLACCPFRKLSYFITNKTIRDLVGNSQRVHVIDFGILYGFQWPTLIHRFSMY--GSPKV 480

Query:   513 RITGIEFPQPGFRPAERVEETGRRLADYAKDFNVPFEYNAIAKRWDTIQLEELKIDRDEV 572
             RITGIEFPQPGFRPA+RVEETG+RLA YAK F VPFEY AIAK+WD IQLE+L IDRDE+
Sbjct:   481 RITGIEFPQPGFRPAQRVEETGQRLAAYAKLFGVPFEYKAIAKKWDAIQLEDLDIDRDEI 540

Query:   573 LVVNCLYRAKNLLDETIAVDSSRNIFLNFIRKINPHMFIHGITNGAYNAPFFVTRFREAL 632
              VVNCLYRA+NL DE++ V+S R+  LN I KINP +F+ GI NGAYNAPFFVTRFREAL
Sbjct:   541 TVVNCLYRAENLHDESVKVESCRDTVLNLIGKINPDLFVFGIVNGAYNAPFFVTRFREAL 600

Query:   633 FHFSAMFDMLETIVPREDRERMVIEKDIFGREALNVVACEGWERVERPETYKQWQVRNLR 692
             FHFS++FDMLETIVPRED ERM +E ++FGREALNV+ACEGWERVERPETYKQW VR +R
Sbjct:   601 FHFSSIFDMLETIVPREDEERMFLEMEVFGREALNVIACEGWERVERPETYKQWHVRAMR 660

Query:   693 AGFVQLPLDRDIVKRATDRVRSGYHKDFVIDEDNRWLLQGWKGRIIYALSAWKP 746
             +G VQ+P D  I+K +  +V + YHKDFVID+DNRWLLQGWKGR + ALS WKP
Sbjct:   661 SGLVQVPFDPSIMKTSLHKVHTFYHKDFVIDQDNRWLLQGWKGRTVMALSVWKP 714

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR\|locus:2025022 SCL14 "SCARECROW-like 14" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2025032 AT1G07520 "AT1G07520" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2148293 AT5G59450 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2075155 AT3G46600 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2164783 PAT1 "AT5G48150" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2026982 SCL1 "AT1G21450" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2008076 SCL5 "AT1G50600" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2044973 SCL21 "AT2G04890" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2080345 SCR "SCARECROW" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O80933	SCL9_ARATH	No assigned EC number	0.5689	0.8688	0.9038	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00021332001	SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (743 aa)
		(Vitis vinifera)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		747
pfam03514		372	pfam03514, GRAS, GRAS family transcription factor	1e-157

>gnl\|CDD\|217595 pfam03514, GRAS, GRAS family transcription factor	Back alignment and domain information

 Score =  460 bits (1187), Expect = e-157
 Identities = 164/376 (43%), Positives = 231/376 (61%), Gaps = 8/376 (2%)

Query: 374 LRSLLIHCAQAVAADDRRSAHEFLKQIRQHSSPFGDGNQRLAKCFADGLEARLAGTGSQI 433
           L  LL+ CA+AV++ D   A   L ++ Q +SP GD  QRLA  F + L ARLA +GS I
Sbjct: 1   LVHLLLACAEAVSSGDLSLAQAILARLNQLASPAGDPMQRLAAYFTEALAARLARSGSSI 60

Query: 434 YKGFVNK---RTSAADILKAYQLYLAACPFRKLSNFTANKTIMSLAQNSMRLHIIDFGIL 490
           Y          + + ++L AY+L+    P+ K  +FTAN+ I+   +   R+HIIDF I 
Sbjct: 61  YSALPPSPSTPSDSVEVLAAYKLFYEVSPYLKFGHFTANQAILEAFEGEERVHIIDFDIG 120

Query: 491 YGFQWPTFIQRISMRPGGPPKLRITGIEFPQPGFRPAERVEETGRRLADYAKDFNVPFEY 550
            G QWP+ IQ ++ RPGGPP LRITGI  PQ  F  AE +EETG RLA +A    VPFE+
Sbjct: 121 QGLQWPSLIQALASRPGGPPHLRITGIGSPQ--FSSAEELEETGDRLAQFADSLGVPFEF 178

Query: 551 NA-IAKRWDTIQLEELKIDRDEVLVVNCLYRAKNLLDETIAVDSSRNIFLNFIRKINPHM 609
           N  +AKR + + LE L +   E L VNC++    LLDE+++++S    FL  ++ +NP +
Sbjct: 179 NPLVAKRLEDLDLEMLDVRPGEALAVNCVFALHRLLDESVSLESPT--FLRLVKSLNPKV 236

Query: 610 FIHGITNGAYNAPFFVTRFREALFHFSAMFDMLETIVPREDRERMVIEKDIFGREALNVV 669
                    +N+  F+ RF EAL ++SA+FD LE  +PR+  ER  +E+++ GRE +NVV
Sbjct: 237 VTLVEQEANHNSAPFLARFVEALHYYSALFDSLEATLPRDSEERRKVERELLGREIVNVV 296

Query: 670 ACEGWERVERPETYKQWQVRNLRAGFVQLPLDRDIVKRATDRVRSGYHKDFVIDEDNRWL 729
           ACEG ERVER ET+ +W+ R  RAGF  +PL    VK+A   +R  Y   + ++EDN  L
Sbjct: 297 ACEGAERVERHETFGKWRERMRRAGFRPVPLSEFAVKQAKLLLRLYYVDGYRVEEDNGSL 356

Query: 730 LQGWKGRIIYALSAWK 745
           + GWKGR + A SAW+
Sbjct: 357 VLGWKGRPLVAASAWR 372

Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable amino-terminus and a highly conserved carboxyl-terminus that contains five recognisable motifs. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction. Length = 372

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		747
PF03514		374	GRAS: GRAS domain family; InterPro: IPR005202 Sequ	100.0
PRK15451		247	tRNA cmo(5)U34 methyltransferase; Provisional	96.9
TIGR02752		231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	95.98
TIGR00740		239	methyltransferase, putative. A simple BLAST search	95.9
PLN02233		261	ubiquinone biosynthesis methyltransferase	95.06
PRK14103		255	trans-aconitate 2-methyltransferase; Provisional	94.04
TIGR02716		306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	93.59
PF13489		161	Methyltransf_23: Methyltransferase domain; PDB: 3J	93.13
PRK06202		232	hypothetical protein; Provisional	92.42
TIGR01934		223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	92.29
PF01209		233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	92.27
PF13847		152	Methyltransf_31: Methyltransferase domain; PDB: 3T	89.68
PLN02336		475	phosphoethanolamine N-methyltransferase	89.58
PRK00216		239	ubiE ubiquinone/menaquinone biosynthesis methyltra	87.14
COG2226		238	UbiE Methylase involved in ubiquinone/menaquinone	87.06
PLN02396		322	hexaprenyldihydroxybenzoate methyltransferase	86.43
PRK08317		241	hypothetical protein; Provisional	86.42
PRK01683		258	trans-aconitate 2-methyltransferase; Provisional	85.33
PF13649		101	Methyltransf_25: Methyltransferase domain; PDB: 3B	84.46
PTZ00098		263	phosphoethanolamine N-methyltransferase; Provision	84.41
PLN02585		315	magnesium protoporphyrin IX methyltransferase	84.38
PF08241		95	Methyltransf_11: Methyltransferase domain; InterPr	83.25
PF09243		274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	81.02
TIGR00477		195	tehB tellurite resistance protein TehB. Part of a	80.05

>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []	Back alignment and domain information

Probab=100.00  E-value=6e-111  Score=916.11  Aligned_cols=370  Identities=45%  Similarity=0.793  Sum_probs=357.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCChhhHHHHHHHHHHHHHhcCCCCCCcCCCCCCCCC---HHHHHHH
Q 004524          374 LRSLLIHCAQAVAADDRRSAHEFLKQIRQHSSPFGDGNQRLAKCFADGLEARLAGTGSQIYKGFVNKRTS---AADILKA  450 (747)
Q Consensus       374 L~~LLl~CAqAVa~gd~~~A~~lL~~Irq~sSp~GD~~QRLA~yFa~AL~aRL~gtgs~~y~~l~s~~~s---~~~~lkA  450 (747)
                      |++||++||+||+.||...|+.+|++|++++||+||++||||+||++||.+||.+++++.|..+.....+   ..++++|
T Consensus         1 L~~lLl~cA~Av~~~~~~~A~~lL~~l~~~as~~g~~~qRla~yF~eAL~~Rl~~~~~~~~~~~~~~~~~~~~~~~~~~a   80 (374)
T PF03514_consen    1 LVQLLLACAEAVAAGDFARAQELLARLRQLASPTGDPMQRLAAYFAEALAARLSGSGPGLYSALPPSSPSPSESSEQLAA   80 (374)
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhHHHHHhccCcccccCCCCccccccchHHHHHH
Confidence            6899999999999999999999999999999999999999999999999999999999999877654443   6789999


Q ss_pred             HHHHHhhcCccchhhHhHhHHHHhhhccCceeEEEecccccccccHHHHHHHhcCCCCCCeEEEeEecCCCCCCCChHHH
Q 004524          451 YQLYLAACPFRKLSNFTANKTIMSLAQNSMRLHIIDFGILYGFQWPTFIQRISMRPGGPPKLRITGIEFPQPGFRPAERV  530 (747)
Q Consensus       451 y~~f~~~~Pf~kfa~f~ANqaILeA~~g~~~VHIIDfgI~~G~QWP~Liq~LA~R~gGPP~LRITgI~~p~~gfrp~e~l  530 (747)
                      |++|++.|||.||||||||||||||++|+++||||||||++|+|||+|||+||.|++|||+||||||+.|.++  +...+
T Consensus        81 ~~~~~~~~P~~~fa~~taNqaIleA~~g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~--~~~~l  158 (374)
T PF03514_consen   81 YQLFYELSPFLKFAHFTANQAILEAFEGERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSG--SADEL  158 (374)
T ss_pred             HHHHHHHhhHHhhhhhchhHHHHHHhccCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCC--cHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999886  68889


Q ss_pred             HHHHHHHHHHHHhcCCcEEEEEe-cccccccCcccccccCCcEEEEEecccccccccccccccchHHHHHHHHHhhCCcE
Q 004524          531 EETGRRLADYAKDFNVPFEYNAI-AKRWDTIQLEELKIDRDEVLVVNCLYRAKNLLDETIAVDSSRNIFLNFIRKINPHM  609 (747)
Q Consensus       531 eetG~RL~~~A~~~gVpFeF~~I-a~~~E~l~~edL~i~~dE~LaVNc~~~Lh~L~desv~~~spRd~vL~~Ir~L~P~V  609 (747)
                      ++||+||.+||+++||||||++| ..+||++++++|++++||+|||||+|+||||+|++....+||+.||+.||+|+|+|
T Consensus       159 ~~~g~rL~~fA~~lgv~fef~~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir~L~P~v  238 (374)
T PF03514_consen  159 QETGRRLAEFARSLGVPFEFHPVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIRSLNPKV  238 (374)
T ss_pred             HHHHHHHHHHHHHcCccEEEEecccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHHhcCCCE
Confidence            99999999999999999999996 56999999999999999999999999999999998888889999999999999999


Q ss_pred             EEEEeecCCCCCCchHHHHHHHHHHHHHHhHHhhhhCCCCCHHHHHHHHHHHHHHHhHhhhccCCcccccccchhhHHHH
Q 004524          610 FIHGITNGAYNAPFFVTRFREALFHFSAMFDMLETIVPREDRERMVIEKDIFGREALNVVACEGWERVERPETYKQWQVR  689 (747)
Q Consensus       610 fv~~e~n~~~nsp~F~~RF~EAL~hYsAlFDsLda~~pr~~~eR~~iEr~~~greI~NvVAcEG~eRvER~Et~~qWq~R  689 (747)
                      ||++|+|++||+|+|++||.|||+||+|+||+||+++|+++++|+.+|+.+||++|+|||||||.+|+||||++++|+.|
T Consensus       239 vv~~E~ea~~n~~~F~~RF~eal~yYsalfdsle~~~~~~~~~r~~~E~~~~~~eI~niVa~eg~~R~eR~e~~~~W~~r  318 (374)
T PF03514_consen  239 VVLVEQEADHNSPSFLERFREALHYYSALFDSLEACLPRDSEERLAVERLFFGREIMNIVACEGEERVERHERLEQWRRR  318 (374)
T ss_pred             EEEEeecCCCCCCchHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhHHHHhhhcccccccccccchhHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCCccccCCHHHHHHHHHHHhccCCCCcEEEecCCEEEEeECCceeEEEeeee
Q 004524          690 NLRAGFVQLPLDRDIVKRATDRVRSGYHKDFVIDEDNRWLLQGWKGRIIYALSAWK  745 (747)
Q Consensus       690 ~~rAGF~~lpLs~~~v~qar~ll~~~y~~~f~v~ed~~wLlLgWKgr~L~a~SaW~  745 (747)
                      |.+|||+++||+.+++.||+.+|+.++++||.|+++++||+|||||+||+++||||
T Consensus       319 ~~~aGF~~~~ls~~~~~qa~~ll~~~~~~g~~v~~~~~~l~L~Wk~~pL~~~SaWr  374 (374)
T PF03514_consen  319 MRRAGFRPVPLSEFAVSQAKLLLRKFPGDGYTVEEDGGCLLLGWKGRPLVAASAWR  374 (374)
T ss_pred             HHhcCCeecCCCHHHHHHHHHHHhccCCCCeEEEEcCCEEEEEeCCcEEEEEeCcC
Confidence            99999999999999999999999986678999999999999999999999999997

Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional	Back alignment and domain information

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase	Back alignment and domain information

>TIGR00740 methyltransferase, putative	Back alignment and domain information

>PLN02233 ubiquinone biosynthesis methyltransferase	Back alignment and domain information

>PRK14103 trans-aconitate 2-methyltransferase; Provisional	Back alignment and domain information

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU	Back alignment and domain information

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C	Back alignment and domain information

>PRK06202 hypothetical protein; Provisional	Back alignment and domain information

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases	Back alignment and domain information

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []	Back alignment and domain information

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A	Back alignment and domain information

>PLN02336 phosphoethanolamine N-methyltransferase	Back alignment and domain information

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed	Back alignment and domain information

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]	Back alignment and domain information

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase	Back alignment and domain information

>PRK08317 hypothetical protein; Provisional	Back alignment and domain information

>PRK01683 trans-aconitate 2-methyltransferase; Provisional	Back alignment and domain information

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A	Back alignment and domain information

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional	Back alignment and domain information

>PLN02585 magnesium protoporphyrin IX methyltransferase	Back alignment and domain information

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals	Back alignment and domain information

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms	Back alignment and domain information

>TIGR00477 tehB tellurite resistance protein TehB	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		747
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 51.0 bits (121), Expect = 1e-06
 Identities = 77/579 (13%), Positives = 160/579 (27%), Gaps = 169/579 (29%)

Query: 22  VSVFPNQNLVAGRFENIFLDQRFRDCRYR-QPDPTPINVV---------SSSTVNHEEDS 71
             VF   N+   R +      + R      +P     NV+         +   ++     
Sbjct: 123 NQVFAKYNVS--RLQPY---LKLRQALLELRPAK---NVLIDGVLGSGKTWVALDVCLSY 174

Query: 72  PEDCDFSDAVLRYIN--QMLMEEDIEEKNCMLQESLDLQAAEKSFYDVLGKKYPPSPDHS 129
              C     +  ++N       E + E   MLQ               +   +    DHS
Sbjct: 175 KVQCKMDFKIF-WLNLKNCNSPETVLE---MLQ----------KLLYQIDPNWTSRSDHS 220

Query: 130 LTYFHQNGESPDGDTSRNLHGYIYGGSDVSSYLI-DNNFIQNSG--EYFNSQLQSLPLST 186
                    S   +  R L    Y     +  L+  N  +QN+     FN   + L L+T
Sbjct: 221 SNIKL-RIHSIQAELRRLLKSKPY----ENCLLVLLN--VQNAKAWNAFNLSCKIL-LTT 272

Query: 187 MPQSSYSSSNSVITSVDGLVDSPSSSLQLPDWNNESQSIWQFRKGVEEANKFLPSE---- 242
                      V   +     +  S           +      K ++   + LP E    
Sbjct: 273 -------RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTT 325

Query: 243 NELFVNLEANRLSSWVPKGETNEVAVKEEKEEVEDVSSNGSRGRKNPYREDVDLEEERSS 302
           N   +++ A  +   +                             + ++  V+ ++  + 
Sbjct: 326 NPRRLSIIAESIRDGL--------------------------ATWDNWK-HVNCDKLTTI 358

Query: 303 KQAAIYSESP--LRTEMF-DMVLLCSGGQSPTVALREALKNASSKTVQQKGQSKGSNGAK 359
            ++++    P   R +MF  + +       PT+ L   +     K+      +K      
Sbjct: 359 IESSLNVLEPAEYR-KMFDRLSVFPPSAHIPTILL-SLIWFDVIKSDVMVVVNKLHK--Y 414

Query: 360 GRGKKQSGKKEVVDLRSLLIHCAQAVAADDRRSAHEFLKQIRQHSSPFGDGNQRLAKCFA 419
              +KQ  K+  + + S+  +    V  ++  + H  +  +  ++ P    +  L   + 
Sbjct: 415 SLVEKQP-KESTISIPSI--YLELKVKLENEYALHRSI--VDHYNIPKTFDSDDLIPPYL 469

Query: 420 DGLEARLAGTGSQIYKGFVNKRTSAADILKAYQLYLAACPFRKLSNFTANKTIMSLAQNS 479
           D             Y   +            + L        +++ F             
Sbjct: 470 DQY----------FYS-HI-----------GHHLK-NIEHPERMTLF------------- 493

Query: 480 MRLHIIDFGILYGFQWPTFIQRISMRPGGPPKLRITGIEFPQPG---------------F 524
            R+  +DF          F+++         K+R     +   G                
Sbjct: 494 -RMVFLDFR---------FLEQ---------KIRHDSTAWNASGSILNTLQQLKFYKPYI 534

Query: 525 RPAERVEETGRRLADYAKDFNVPFEYNAI-AKRWDTIQL 562
              +   E  R +     DF    E N I +K  D +++
Sbjct: 535 CDNDPKYE--RLVNAI-LDFLPKIEENLICSKYTDLLRI 570

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		747
d1qzza2		256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	97.23
d1jqea_		280	Histamine methyltransferase {Human (Homo sapiens)	97.11
d1im8a_		225	Hypothetical protein HI0319 (YecO) {Haemophilus in	96.4
d1tw3a2		253	Carminomycin 4-O-methyltransferase {Streptomyces p	95.76
d1fp1d2		244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	93.96
d1xxla_		234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	92.07
d2fk8a1		280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	90.85
d1fp2a2		244	Isoflavone O-methyltransferase {Alfalfa (Medicago	88.59
d1vlma_		208	Possible histamine N-methyltransferase TM1293 {The	87.7
d1nkva_		245	Hypothetical Protein YjhP {Escherichia coli [TaxId	86.49
d1ri5a_		252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	85.75
d1ve3a1		226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	85.62
d1vl5a_		231	Hypothetical protein BH2331 {Bacillus halodurans [	84.7
d2gh1a1		281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	84.29
d2ex4a1		222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	83.56

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=97.23  E-value=0.0061  Score=35.02  Aligned_cols=165  Identities=20%  Similarity=0.126  Sum_probs=83.4

Q ss_pred             HHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCE
Q ss_conf             69998432068506997635556665089999984499999918996732899999985899999999999988569768
Q 004524          469 NKTIMSLAQNSMRLHIIDFGILYGFQWPTFIQRISMRPGGPPKLRITGIEFPQPGFRPAERVEETGRRLADYAKDFNVPF  548 (747)
Q Consensus       469 NqaILeA~~g~~~VHIIDfgI~~G~QWp~Llq~LA~R~gGPP~LRITgI~~pq~gfrpae~leetG~RL~~~A~~~gVpF  548 (747)
                      ...|+++..=...=+|+|+|-+.|.    ++..|+++-   |.+++|++|.|       +.++...+++.+.  ...--+
T Consensus        70 ~~~~~~~~d~~~~~~vlDvG~G~G~----~~~~l~~~~---P~~~~~~~Dlp-------~~~~~a~~~~~~~--~~~~ri  133 (256)
T d1qzza2          70 YEAPADAYDWSAVRHVLDVGGGNGG----MLAAIALRA---PHLRGTLVELA-------GPAERARRRFADA--GLADRV  133 (256)
T ss_dssp             THHHHHTSCCTTCCEEEEETCTTSH----HHHHHHHHC---TTCEEEEEECH-------HHHHHHHHHHHHT--TCTTTE
T ss_pred             HHHHHHCCCCCCCCEEEEECCCCCH----HHHHHHHHH---CCCEEEEECCH-------HHHHHHHHHHHHC--CCCCEE
T ss_conf             9998752797668879997898978----999999862---58579993482-------8889999987641--776504


Q ss_pred             EEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHH-HHHCCCEEEEEEECCCCCCCCHHHH
Q ss_conf             998714553433722344568957999722222322111001456179999999-8418858999863388898824788
Q 004524          549 EYNAIAKRWDTIQLEELKIDRDEVLVVNCLYRAKNLLDETIAVDSSRNIFLNFI-RKINPHMFIHGITNGAYNAPFFVTR  627 (747)
Q Consensus       549 eF~~Ia~~~E~i~~edL~i~~dE~LaVN~~f~Lh~L~desv~~~spRd~vL~~I-R~L~P~Vfv~~e~ng~~n~p~F~~R  627 (747)
                      +|..-. .++     .   .+..+=+|-+..-||++.|+.      ...+|+.| +.|+|.--++.............. 
T Consensus       134 ~~~~~d-~~~-----~---~p~~~D~v~~~~vLh~~~d~~------~~~lL~~i~~~LkpgG~llI~d~~~~~~~~~~~-  197 (256)
T d1qzza2         134 TVAEGD-FFK-----P---LPVTADVVLLSFVLLNWSDED------ALTILRGCVRALEPGGRLLVLDRADVEGDGADR-  197 (256)
T ss_dssp             EEEECC-TTS-----C---CSCCEEEEEEESCGGGSCHHH------HHHHHHHHHHHEEEEEEEEEEECCH-------H-
T ss_pred             EEEEEE-CCC-----C---CCCCCHHHHCCCCCCCCCCHH------HHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCH-
T ss_conf             664200-123-----4---666430121144201257377------779999998635886604898730679885217-


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCCC
Q ss_conf             9999987899868764208999999999999999997857564148866556303456999998289920259
Q 004524          628 FREALFHFSAMFDMLETIVPREDRERMVIEKDIFGREALNVVACEGWERVERPETYKQWQVRNLRAGFVQLPL  700 (747)
Q Consensus       628 F~EAL~yYSAlFDsLDa~~pr~~~eR~~iEr~~lgreI~NVVAcEG~eRvER~Ety~qWq~R~~rAGF~~lpL  700 (747)
                            .+.++||.                      ..  .+.+.|.+|     |.++|+..+..|||+.+..
T Consensus       198 ------~~~~~~d~----------------------~m--l~~~~g~~r-----t~~e~~~ll~~AGf~~~~~  235 (256)
T d1qzza2         198 ------FFSTLLDL----------------------RM--LTFMGGRVR-----TRDEVVDLAGSAGLALASE  235 (256)
T ss_dssp             ------HHHHHHHH----------------------HH--HHHHSCCCC-----CHHHHHHHHHTTTEEEEEE
T ss_pred             ------HHHHHHHH----------------------HH--HHHCCCCCC-----CHHHHHHHHHHCCCCEEEE
T ss_conf             ------89999889----------------------99--861798268-----9999999999879916699

PyMOL of d1qzza2

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}	Back information, alignment and structure

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}	Back information, alignment and structure

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}	Back information, alignment and structure

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}	Back information, alignment and structure

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}	Back information, alignment and structure

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}	Back information, alignment and structure

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}	Back information, alignment and structure

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}	Back information, alignment and structure

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}	Back information, alignment and structure

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure