Citrus Sinensis ID: 004537
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 746 | 2.2.26 [Sep-21-2011] | |||||||
| Q93YS4 | 751 | ABC transporter G family | yes | no | 0.989 | 0.982 | 0.770 | 0.0 | |
| Q9FT51 | 737 | ABC transporter G family | no | no | 0.975 | 0.987 | 0.695 | 0.0 | |
| Q9C6W5 | 648 | ABC transporter G family | no | no | 0.782 | 0.901 | 0.489 | 1e-165 | |
| Q9LK50 | 685 | ABC transporter G family | no | no | 0.781 | 0.851 | 0.462 | 1e-160 | |
| Q9SZR9 | 638 | ABC transporter G family | no | no | 0.762 | 0.891 | 0.490 | 1e-159 | |
| Q84TH5 | 662 | ABC transporter G family | no | no | 0.780 | 0.879 | 0.445 | 1e-153 | |
| Q7XA72 | 672 | ABC transporter G family | no | no | 0.806 | 0.895 | 0.448 | 1e-151 | |
| Q4GZT4 | 655 | ATP-binding cassette sub- | yes | no | 0.752 | 0.856 | 0.331 | 3e-83 | |
| Q7TMS5 | 657 | ATP-binding cassette sub- | yes | no | 0.780 | 0.885 | 0.326 | 2e-82 | |
| Q9UNQ0 | 655 | ATP-binding cassette sub- | yes | no | 0.705 | 0.803 | 0.349 | 4e-82 |
| >sp|Q93YS4|AB22G_ARATH ABC transporter G family member 22 OS=Arabidopsis thaliana GN=ABCG22 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 1167 bits (3019), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 579/751 (77%), Positives = 659/751 (87%), Gaps = 13/751 (1%)
Query: 1 MEKPVSSTSLARTKSDQLVETLSAAFKSP--------VSSETAGASDGGGTLSRKSSRRM 52
MEKP ++ LART+S+QL ET++A +SP V + A GGGTLSRKSSRR+
Sbjct: 3 MEKPPLASGLARTRSEQLYETVAADIRSPHGSMDANGVPATAPAAVGGGGTLSRKSSRRL 62
Query: 53 LTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSGAALSRASSASLGLSFSFTGFTMPP 112
+ SPGR+ SG THIRKSRSAQLKLEL+EVSSGAALSRASSASLGLSFSFTGF MPP
Sbjct: 63 M-GMSPGRS--SGAGTHIRKSRSAQLKLELEEVSSGAALSRASSASLGLSFSFTGFAMPP 119
Query: 113 DEIADSKPFSDDD-IPEDIEAGTRERPKFQTEPTLPIYLKFTDVTYKVILKGMTSSEEKD 171
+EI+DSKPFSDD+ IPEDIEAG +++PKFQ EPTLPI+LKF DVTYKV++K +TSS EK+
Sbjct: 120 EEISDSKPFSDDEMIPEDIEAG-KKKPKFQAEPTLPIFLKFRDVTYKVVIKKLTSSVEKE 178
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKI 231
IL GI+GSVNPGEVLALMGPSGSGKTTLL+LL+GR+ + + GGS+TYND PYSK LKSKI
Sbjct: 179 ILTGISGSVNPGEVLALMGPSGSGKTTLLSLLAGRISQSSTGGSVTYNDKPYSKYLKSKI 238
Query: 232 GFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGS 291
GFVTQDDVLFPHLTVKETLTYAA LRLP TLT++QK++RA+DVI ELGLERCQDTMIGG+
Sbjct: 239 GFVTQDDVLFPHLTVKETLTYAARLRLPKTLTREQKKQRALDVIQELGLERCQDTMIGGA 298
Query: 292 FVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTT 351
FVRGVSGGERKRV IGNEIIINPSLL LDEPTSGLDSTTALR + ML DIAEAGKTV+TT
Sbjct: 299 FVRGVSGGERKRVSIGNEIIINPSLLLLDEPTSGLDSTTALRTILMLHDIAEAGKTVITT 358
Query: 352 IHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGCSPQIAMNPAEFLLDLANGN 411
IHQPSSRLFH+FDKLILLG+GSLLYFGK+SEA+ YFSSIGCSP IAMNPAEFLLDLANGN
Sbjct: 359 IHQPSSRLFHRFDKLILLGRGSLLYFGKSSEALDYFSSIGCSPLIAMNPAEFLLDLANGN 418
Query: 412 LHDVSVPSELQDRVQTENSENDTANGKPTPAIVHEYLVEAYETRVAENEKKKLMAPIPLD 471
++D+SVPSEL DRVQ NS +T GKP+PA VHEYLVEAYETRVAE EKKKL+ P+PLD
Sbjct: 419 INDISVPSELDDRVQVGNSGRETQTGKPSPAAVHEYLVEAYETRVAEQEKKKLLDPVPLD 478
Query: 472 EEIKAKVSSPKRNWGASWIQQYTILFRRGIKEHRHDYFSWLRITQVLATAVILGLLWWQS 531
EE KAK + KR WG W +QY ILF RG+KE RH+YFSWLR+TQVL+TAVILGLLWWQS
Sbjct: 479 EEAKAKSTRLKRQWGTCWWEQYCILFCRGLKERRHEYFSWLRVTQVLSTAVILGLLWWQS 538
Query: 532 DSKSPKGLEDQAGLLFFIAVFWSFFPIFTAIFTFPQERAMLSKERAADMYRLSAYFLART 591
D ++P GL+DQAGLLFFIAVFW FFP+FTAIF FPQERAML+KERAADMYRLSAYFLART
Sbjct: 539 DIRTPMGLQDQAGLLFFIAVFWGFFPVFTAIFAFPQERAMLNKERAADMYRLSAYFLART 598
Query: 592 TSDLPLNLVLPVLFLVIVYFMAGLRMGAGPFFLSMLTVFLSIVAAQGLGLAIGAILMDLK 651
TSDLPL+ +LP LFL++VYFM GLR+ PFFLSMLTVFL I+AAQGLGLAIGAILMDLK
Sbjct: 599 TSDLPLDFILPSLFLLVVYFMTGLRISPYPFFLSMLTVFLCIIAAQGLGLAIGAILMDLK 658
Query: 652 KATTLASVTIMTFMLAGGYFVQEVPVFISWIRYMSFNFHTYKILLKIQYADISPIVNGMR 711
KATTLASVT+MTFMLAGG+FV++VPVFISWIRY+SFN+HTYK+LLK+QY D + +NGMR
Sbjct: 659 KATTLASVTVMTFMLAGGFFVKKVPVFISWIRYLSFNYHTYKLLLKVQYQDFAVSINGMR 718
Query: 712 TDSGFREVCALVAMVFGYRLLAYLSLRKMKL 742
D+G EV ALV M+FGYRLLAYLSLR+MK+
Sbjct: 719 IDNGLTEVAALVVMIFGYRLLAYLSLRQMKI 749
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FT51|AB27G_ARATH ABC transporter G family member 27 OS=Arabidopsis thaliana GN=ABCG27 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1014 bits (2623), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 514/739 (69%), Positives = 602/739 (81%), Gaps = 11/739 (1%)
Query: 6 SSTSLARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSR-RMLTAASPGRAGAS 64
SS+ L + KS ETL+ A KS SS DG S++ R R L++ S +
Sbjct: 6 SSSGLVKAKS----ETLAEALKS--SSLDFSNGDGSSHGSKQHVRARTLSSPSYSSNSKN 59
Query: 65 GRNTHIRKSRSAQLKLELDEVSSGAALSRASSASLGLSFSFTGFTMPPDEIADSKPFSDD 124
NTHIRK++SA L+L ++ GAALSRASSASLGLSFSFTGFT+P +EI S+ S+D
Sbjct: 60 RWNTHIRKAKSAHPALDLAGLTGGAALSRASSASLGLSFSFTGFTVPHEEIIASERCSND 119
Query: 125 DIPEDIEAGTRERPKFQTEPTLPIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGE 184
DI EDIEA T KFQ EPT PIYLKF D+TYKV KGMTSS EK ILNGI+GS PGE
Sbjct: 120 DILEDIEAATSSVVKFQAEPTFPIYLKFIDITYKVTTKGMTSSSEKSILNGISGSAYPGE 179
Query: 185 VLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHL 244
+LALMGPSGSGKTTLLN L GR + +GGS++YND PYSK LK++IGFVTQDDVLFPHL
Sbjct: 180 LLALMGPSGSGKTTLLNALGGRFNQQNIGGSVSYNDKPYSKHLKTRIGFVTQDDVLFPHL 239
Query: 245 TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304
TVKETLTY ALLRLP TLT+Q+KE+RA VI ELGLERCQDTMIGGSFVRGVSGGERKRV
Sbjct: 240 TVKETLTYTALLRLPKTLTEQEKEQRAASVIQELGLERCQDTMIGGSFVRGVSGGERKRV 299
Query: 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFD 364
CIGNEI+ NPSLL LDEPTS LDSTTAL+IVQML IA+AGKT+VTTIHQPSSRLFH+FD
Sbjct: 300 CIGNEIMTNPSLLLLDEPTSSLDSTTALKIVQMLHCIAKAGKTIVTTIHQPSSRLFHRFD 359
Query: 365 KLILLGKGSLLYFGKASEAMAYFSSIGCSPQIAMNPAEFLLDLANGNLHDVSVPSELQDR 424
KL++L +GSLLYFGKASEAM+YFSSIGCSP +AMNPAEFLLDL NGN++D+SVPS L+++
Sbjct: 360 KLVVLSRGSLLYFGKASEAMSYFSSIGCSPLLAMNPAEFLLDLVNGNMNDISVPSALKEK 419
Query: 425 VQTENSENDTANGKPTPAIVHEYLVEAYETRVAENEKKKLMAPIPLDEEIKAKVSSPKRN 484
++ E N K + +YL EAY+T++A EK KLMAP+PLDEE+K ++ PKR
Sbjct: 420 MKIIRLELYVRNVKCD--VETQYLEEAYKTQIAVMEKMKLMAPVPLDEEVKLMITCPKRE 477
Query: 485 WGASWIQQYTILFRRGIKEHRHDYFSWLRITQVLATAVILGLLWWQSDSKSPKGLEDQAG 544
WG SW +QY +L RGIKE RHDYFSWLR+TQVL+TA+ILGLLWWQSD S + ++G
Sbjct: 478 WGLSWWEQYCLLSLRGIKERRHDYFSWLRVTQVLSTAIILGLLWWQSDITSQR--PTRSG 535
Query: 545 LLFFIAVFWSFFPIFTAIFTFPQERAMLSKERAADMYRLSAYFLARTTSDLPLNLVLPVL 604
LLFFIAVFW FFP+FTAIFTFPQERAMLSKER ++MYRLSAYF+ARTTSDLPL+L+LPVL
Sbjct: 536 LLFFIAVFWGFFPVFTAIFTFPQERAMLSKERESNMYRLSAYFVARTTSDLPLDLILPVL 595
Query: 605 FLVIVYFMAGLRMGAGPFFLSMLTVFLSIVAAQGLGLAIGAILMDLKKATTLASVTIMTF 664
FLV+VYFMAGLR+ A FFLS+LTVFL IVAAQGLGLAIGA LMDLKKATTLASVT+MTF
Sbjct: 596 FLVVVYFMAGLRLRAESFFLSVLTVFLCIVAAQGLGLAIGASLMDLKKATTLASVTVMTF 655
Query: 665 MLAGGYFVQEVPVFISWIRYMSFNFHTYKILLKIQYADISPIVNGMRTDSGFREVCALVA 724
MLAGGYFV++VP FI+WIR+MSFN+HTYK+L+K+QY +I VNG +SG +EV ALVA
Sbjct: 656 MLAGGYFVKKVPFFIAWIRFMSFNYHTYKLLVKVQYEEIMESVNGEEIESGLKEVSALVA 715
Query: 725 MVFGYRLLAYLSLRKMKLH 743
M+ GYRL+AY SLR+MKLH
Sbjct: 716 MIIGYRLVAYFSLRRMKLH 734
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9C6W5|AB14G_ARATH ABC transporter G family member 14 OS=Arabidopsis thaliana GN=ABCG14 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 582 bits (1501), Expect = e-165, Method: Compositional matrix adjust.
Identities = 311/635 (48%), Positives = 423/635 (66%), Gaps = 51/635 (8%)
Query: 138 PKFQTEPTL-----PIYLKFTDVTYKVILK------GMTSSEEKDILNGITGSVNPGEVL 186
P ++P L PI LKF +V YKV ++ G S+EK ILNGITG V PGE L
Sbjct: 36 PTITSQPGLQMSMYPITLKFEEVVYKVKIEQTSQCMGSWKSKEKTILNGITGMVCPGEFL 95
Query: 187 ALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTV 246
A++GPSGSGKTTLL+ L GRL + T G + YN P+S +K + GFV QDDVL+PHLTV
Sbjct: 96 AMLGPSGSGKTTLLSALGGRLSK-TFSGKVMYNGQPFSGCIKRRTGFVAQDDVLYPHLTV 154
Query: 247 KETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306
ETL + ALLRLP++LT+ +K + VI ELGL RC ++MIGG RG+SGGE+KRV I
Sbjct: 155 WETLFFTALLRLPSSLTRDEKAEHVDRVIAELGLNRCTNSMIGGPLFRGISGGEKKRVSI 214
Query: 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKL 366
G E++INPSLL LDEPTSGLDSTTA RIV ++ +A G+TVVTTIHQPSSR++H FDK+
Sbjct: 215 GQEMLINPSLLLLDEPTSGLDSTTAHRIVTTIKRLASGGRTVVTTIHQPSSRIYHMFDKV 274
Query: 367 ILLGKGSLLYFGKASEAMAYFSSIGCSPQIAMNPAEFLLDLANGNLHDVSVPSELQDRVQ 426
+LL +GS +Y+G AS A+ YFSS+G S + +NPA+ LLDLANG +P + Q
Sbjct: 275 VLLSEGSPIYYGAASSAVEYFSSLGFSTSLTVNPADLLLDLANG------IPPD----TQ 324
Query: 427 TENSENDTANGKPTPAIVHEYLVEAYETRVAENEKKKLM-APIPLDEEIKAKVSSPK-RN 484
E SE + V E LV AYE ++ K +L A E KA + K
Sbjct: 325 KETSEQEQKT-------VKETLVSAYEKNISTKLKAELCNAESHSYEYTKAAAKNLKSEQ 377
Query: 485 WGASWIQQYTILFRRGIKEHRHDYFSWLRITQVLATAVILGLLWWQSDSKSPKG-LEDQA 543
W +W Q+T+L +RG++E R + F+ LRI QV++ A + GLLWW +PK ++D+
Sbjct: 378 WCTTWWYQFTVLLQRGVRERRFESFNKLRIFQVISVAFLGGLLWWH----TPKSHIQDRT 433
Query: 544 GLLFFIAVFWSFFPIFTAIFTFPQERAMLSKERAADMYRLSAYFLARTTSDLPLNLVLPV 603
LLFF +VFW F+P++ A+FTFPQE+ ML KER++ MYRLS+YF+AR DLPL L LP
Sbjct: 434 ALLFFFSVFWGFYPLYNAVFTFPQEKRMLIKERSSGMYRLSSYFMARNVGDLPLELALPT 493
Query: 604 LFLVIVYFMAGLRMGAGPFFLSMLTVFLSIVAAQGLGLAIGAILMDLKKATTLASVTIMT 663
F+ I+Y+M GL+ F LS+L V S++ AQGLGLA GA+LM++K+ATTLASVT +
Sbjct: 494 AFVFIIYWMGGLKPDPTTFILSLLVVLYSVLVAQGLGLAFGALLMNIKQATTLASVTTLV 553
Query: 664 FMLAGGYFVQEVPVFISWIRYMSFNFHTYKILLKIQYADIS---------------PIVN 708
F++AGGY+VQ++P FI W++Y+S++++ YK+LL IQY D P +
Sbjct: 554 FLIAGGYYVQQIPPFIVWLKYLSYSYYCYKLLLGIQYTDDDYYECSKGVWCRVGDFPAIK 613
Query: 709 GMRTDSGFREVCALVAMVFGYRLLAYLSLRKMKLH 743
M ++ + +V + M+ GYRL+AY++L ++KL
Sbjct: 614 SMGLNNLWIDVFVMGVMLVGYRLMAYMALHRVKLR 648
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LK50|AB26G_ARATH ABC transporter G family member 26 OS=Arabidopsis thaliana GN=ABCG26 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 566 bits (1459), Expect = e-160, Method: Compositional matrix adjust.
Identities = 291/629 (46%), Positives = 412/629 (65%), Gaps = 46/629 (7%)
Query: 146 LPIYLKFTDVTYKV---------ILKGMTS----------SEEKDILNGITGSVNPGEVL 186
LPI+LKF DV YKV ++K M S K IL GITGS PGE+L
Sbjct: 61 LPIFLKFEDVEYKVRNSHASSANLVKTMVSKVVTHTNPDPDGYKHILKGITGSTGPGEIL 120
Query: 187 ALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTV 246
ALMGPSGSGKTTLL ++ GRL + V G +TYND PYS S+K +IGFVTQDDVL P LTV
Sbjct: 121 ALMGPSGSGKTTLLKIMGGRLTD-NVKGKLTYNDIPYSPSVKRRIGFVTQDDVLLPQLTV 179
Query: 247 KETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306
+ETL +AA LRLP++++K+QK + +I ELGLERC+ T +GG FV+G+SGGERKR I
Sbjct: 180 EETLAFAAFLRLPSSMSKEQKYAKIEMIIKELGLERCRRTRVGGGFVKGISGGERKRASI 239
Query: 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKL 366
EI+++PSLL LDEPTSGLDST+A +++ +LQ +A+AG+TV+TTIHQPSSR+FH FDKL
Sbjct: 240 AYEILVDPSLLLLDEPTSGLDSTSATKLLHILQGVAKAGRTVITTIHQPSSRMFHMFDKL 299
Query: 367 ILLGKGSLLYFGKASEAMAYFSSIGCSPQIAMNPAEFLLDLANGNLHDVSVPSELQDRVQ 426
+L+ +G ++GKA E+M YFSS+ P+IAMNPAEFLLDLA G + D+S+P EL +
Sbjct: 300 LLISEGHPAFYGKARESMEYFSSLRILPEIAMNPAEFLLDLATGQVSDISLPDEL---LA 356
Query: 427 TENSENDTANGKPTPAIVHEYLVEAYETRVAENEKKKLMAPIPLDEEIKAKVSSPKRNWG 486
+ ++ D+ ++ +YL + Y+T + EK++ E ++ + K++W
Sbjct: 357 AKTAQPDSEE------VLLKYLKQRYKTDLEPKEKEENHRNRKAPEHLQIAIQV-KKDWT 409
Query: 487 ASWIQQYTILFRRGIKEHRHDYFSWLRITQVLATAVILGLLWWQSDSKSPKGLEDQAGLL 546
SW Q+ IL RR +E R DYF LR+ Q L AV+LGLLWW+S + + L DQ GL+
Sbjct: 410 LSWWDQFLILSRRTFRERRRDYFDKLRLVQSLGVAVVLGLLWWKSKTDTEAHLRDQVGLM 469
Query: 547 FFIAVFWSFFPIFTAIFTFPQERAMLSKERAADMYRLSAYFLARTTSDLPLNLVLPVLFL 606
F+I +FW+ +F A++ FP E+ L KER A+MYRLS Y++ T D+ +++ P F+
Sbjct: 470 FYICIFWTSSSLFGAVYVFPFEKIYLVKERKAEMYRLSVYYVCSTLCDMVAHVLYPTFFM 529
Query: 607 VIVYFMAGLRMGAGPFFLSMLTVFLSIVAAQGLGLAIGAILMDLKKATTLASVTIMTFML 666
+IVYFMA F ++LT+ L + +QG G +GA ++ +K+A +AS+ +M F+L
Sbjct: 530 IIVYFMAEFNRNIPCFLFTVLTILLIAITSQGAGEFLGASVLSIKRAGMIASLVLMLFLL 589
Query: 667 AGGYFVQEVPVFISWIRYMSFNFHTYKILLKIQYA----------------DISPIVNGM 710
GGY+VQ +P F+ W++Y+SF + +++LLK+QY+ S + +
Sbjct: 590 TGGYYVQHIPKFMQWLKYLSFMHYGFRLLLKVQYSADQLFECGSKGGCRTLQSSSSFDTI 649
Query: 711 RTDSGFREVCALVAMVFGYRLLAYLSLRK 739
+ G +E+ L+AM FGYRL AY LRK
Sbjct: 650 NLNGGLQELWVLLAMAFGYRLCAYFCLRK 678
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SZR9|AB9G_ARATH ABC transporter G family member 9 OS=Arabidopsis thaliana GN=ABCG9 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 563 bits (1450), Expect = e-159, Method: Compositional matrix adjust.
Identities = 306/624 (49%), Positives = 417/624 (66%), Gaps = 55/624 (8%)
Query: 147 PIYLKFTDVTYKVILKGMTS-------SEEKDILNGITGSVNPGEVLALMGPSGSGKTTL 199
P+ LKF ++ Y V LK +EE+ IL G+TG V PGE+LA++GPSGSGKT+L
Sbjct: 34 PVTLKFENLVYTVKLKDSQGCFGKNDKTEERTILKGLTGIVKPGEILAMLGPSGSGKTSL 93
Query: 200 LNLLSGRLMEPT--VGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLR 257
L L GR+ E + G+I+YN+ P SK++K GFVTQDD L+P+LTV ETL + ALLR
Sbjct: 94 LTALGGRVGEGKGKLTGNISYNNKPLSKAVKRTTGFVTQDDALYPNLTVTETLVFTALLR 153
Query: 258 LPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLL 317
LPN+ KQ+K K+A V+ ELGL+RC+DT+IGG F+RGVSGGERKRV IG EI+INPSLL
Sbjct: 154 LPNSFKKQEKIKQAKAVMTELGLDRCKDTIIGGPFLRGVSGGERKRVSIGQEILINPSLL 213
Query: 318 FLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377
FLDEPTSGLDSTTA RIV +L ++A G+TVVTTIHQPSSRLF+ FDKL+LL +G+ +YF
Sbjct: 214 FLDEPTSGLDSTTAQRIVSILWELARGGRTVVTTIHQPSSRLFYMFDKLLLLSEGNPVYF 273
Query: 378 GKASEAMAYFSSIGCSPQIA-MNPAEFLLDLANGNLHDVSVPSELQDRVQTENSENDTAN 436
G S AM YF+S+G SP + +NP++FLLD+ANG V ++ S+
Sbjct: 274 GLGSNAMDYFASVGYSPLVERINPSDFLLDIANG--------------VGSDESQR---- 315
Query: 437 GKPTPAIVHEYLVEAYETRVAE---NEKKKLMAPIPLDEEIKAKVSSPKRNWGASWIQQY 493
P + LV Y+T + + NE K E ++ +W +W QQ+
Sbjct: 316 ----PEAMKAALVAFYKTNLLDSVINEVKGQDDLCNKPRESSRVATNTYGDWPTTWWQQF 371
Query: 494 TILFRRGIKEHRHDYFSWLRITQVLATAVILGLLWWQSDSKSPKGLEDQAGLLFFIAVFW 553
+L +RG+K+ RHD FS +++ Q+ + + GLLWWQ+ L+DQ GLLFFI+ FW
Sbjct: 372 CVLLKRGLKQRRHDSFSGMKVAQIFIVSFLCGLLWWQTKISR---LQDQIGLLFFISSFW 428
Query: 554 SFFPIFTAIFTFPQERAMLSKERAADMYRLSAYFLARTTSDLPLNLVLPVLFLVIVYFMA 613
+FFP+F IFTFPQERAML KER++ MYRLS YFL+R DLP+ L+LP FLVI Y+MA
Sbjct: 429 AFFPLFQQIFTFPQERAMLQKERSSGMYRLSPYFLSRVVGDLPMELILPTCFLVITYWMA 488
Query: 614 GLRMGAGPFFLSMLTVFLSIVAAQGLGLAIGAILMDLKKATTLASVTIMTFMLAGGYFVQ 673
GL FF+++L + + ++ + GLGLA+GA++MD K ATTL SV ++TF+LAGGY+VQ
Sbjct: 489 GLNHNLANFFVTLLVLLVHVLVSGGLGLALGALVMDQKSATTLGSVIMLTFLLAGGYYVQ 548
Query: 674 EVPVFISWIRYMSFNFHTYKILLKIQYA--DISPI---------------VNGMRTDSGF 716
VPVFISWI+Y+S ++TYK+L+ QY ++ P + + +SG
Sbjct: 549 HVPVFISWIKYVSIGYYTYKLLILGQYTANELYPCGDNGKLRCHVGDFEGIKHIGFNSGL 608
Query: 717 REVCALVAMVFGYRLLAYLSLRKM 740
AL AM+ YR++AY++L ++
Sbjct: 609 VSALALTAMLVVYRVIAYIALTRI 632
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q84TH5|AB25G_ARATH ABC transporter G family member 25 OS=Arabidopsis thaliana GN=ABCG25 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 543 bits (1400), Expect = e-153, Method: Compositional matrix adjust.
Identities = 295/662 (44%), Positives = 407/662 (61%), Gaps = 80/662 (12%)
Query: 135 RERPKFQTEPTLPIYLKFTDVTYKVILKGMT---------------------SSEEKDIL 173
RE + PI LKF DV Y+V + GM+ S+EE+ IL
Sbjct: 25 REPRSLLSSSCFPITLKFVDVCYRVKIHGMSNDSCNIKKLLGLKQKPSDETRSTEERTIL 84
Query: 174 NGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGF 233
+G+TG ++PGE +A++GPSGSGK+TLLN ++GRL + G I ND +K + GF
Sbjct: 85 SGVTGMISPGEFMAVLGPSGSGKSTLLNAVAGRLHGSNLTGKILINDGKITKQTLKRTGF 144
Query: 234 VTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFV 293
V QDD+L+PHLTV+ETL + ALLRLP +LT+ K + A VI+ELGL +C++T++G +F+
Sbjct: 145 VAQDDLLYPHLTVRETLVFVALLRLPRSLTRDVKLRAAESVISELGLTKCENTVVGNTFI 204
Query: 294 RGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTI 352
RG+SGGERKRV I +E++INPSLL LDEPTSGLD+T ALR+VQ L +A GKTVVT+I
Sbjct: 205 RGISGGERKRVSIAHELLINPSLLVLDEPTSGLDATAALRLVQTLAGLAHGKGKTVVTSI 264
Query: 353 HQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGCSPQIAMNPAEFLLDLANGNL 412
HQPSSR+F FD ++LL +G L+ GK +AMAYF S+G SP MNPA+FLLDLANG
Sbjct: 265 HQPSSRVFQMFDTVLLLSEGKCLFVGKGRDAMAYFESVGFSPAFPMNPADFLLDLANG-- 322
Query: 413 HDVSVPSELQDRVQTENSENDTANGKPTPAIVHEYLVEAYETRVAENEKKKL-MAPIPLD 471
++ T KP V + LV AY+T +A K + ++ P D
Sbjct: 323 --------------VCQTDGVTEREKPN---VRQTLVTAYDTLLAPQVKTCIEVSHFPQD 365
Query: 472 EEIKAKVSSPKRNWG------ASWIQQYTILFRRGIKEHRHDYFSWLRITQVLATAVILG 525
A+ + N G A+W Q IL R +KE RH+ F LRI QV+A +++ G
Sbjct: 366 ---NARFVKTRVNGGGITTCIATWFSQLCILLHRLLKERRHESFDLLRIFQVVAASILCG 422
Query: 526 LLWWQSDSKSPKGLEDQAGLLFFIAVFWSFFPIFTAIFTFPQERAMLSKERAADMYRLSA 585
L+WW SD + + D+ GLLFFI++FW P F A+FTFPQERA+ ++ERA+ MY LS+
Sbjct: 423 LMWWHSDYRD---VHDRLGLLFFISIFWGVLPSFNAVFTFPQERAIFTRERASGMYTLSS 479
Query: 586 YFLARTTSDLPLNLVLPVLFLVIVYFMAGLRMGAGPFFLSMLTVFLSIVAAQGLGLAIGA 645
YF+A L + LVLP FL Y+M LR G PF L++ + L ++A+QGLGLA+GA
Sbjct: 480 YFMAHVLGSLSMELVLPASFLTFTYWMVYLRPGIVPFLLTLSVLLLYVLASQGLGLALGA 539
Query: 646 ILMDLKKATTLASVTIMTFMLAGGYFVQEVPVFISWIRYMSFNFHTYKILLKIQYADISP 705
+MD KKA+T+ +VT++ F+L GGY+V +VP + W++Y+S F+ Y++L+ IQY
Sbjct: 540 AIMDAKKASTIVTVTMLAFVLTGGYYVNKVPSGMVWMKYVSTTFYCYRLLVAIQYGSGEE 599
Query: 706 IVNGMRTDS------------GFR--------------EVCALVAMVFGYRLLAYLSLRK 739
I+ + DS G R V L M FGYR+LAYL+LR+
Sbjct: 600 ILRMLGCDSKGKQGASAATSAGCRFVEEEVIGDVGMWTSVGVLFLMFFGYRVLAYLALRR 659
Query: 740 MK 741
+K
Sbjct: 660 IK 661
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q7XA72|AB21G_ARATH ABC transporter G family member 21 OS=Arabidopsis thaliana GN=ABCG21 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 536 bits (1382), Expect = e-151, Method: Compositional matrix adjust.
Identities = 294/656 (44%), Positives = 424/656 (64%), Gaps = 54/656 (8%)
Query: 119 KPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFTDVTYKVILKGMT--------SSEEK 170
P DDD D + + + PI LKF ++TY + K T S E K
Sbjct: 37 NPCLDDDNDHDGPSHQSRQSSVLRQSLRPIILKFEELTYSI--KSQTGKGSYWFGSQEPK 94
Query: 171 D---ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227
+L ++G V PGE+LA++GPSGSGKTTL+ L+GRL + + G+++YN P++ S+
Sbjct: 95 PNRLVLKCVSGIVKPGELLAMLGPSGSGKTTLVTALAGRL-QGKLSGTVSYNGEPFTSSV 153
Query: 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTM 287
K K GFVTQDDVL+PHLTV ETLTY ALLRLP LT+++K ++ V+++LGL RC +++
Sbjct: 154 KRKTGFVTQDDVLYPHLTVMETLTYTALLRLPKELTRKEKLEQVEMVVSDLGLTRCCNSV 213
Query: 288 IGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKT 347
IGG +RG+SGGERKRV IG E+++NPSLL LDEPTSGLDSTTA RIV L+ +A G+T
Sbjct: 214 IGGGLIRGISGGERKRVSIGQEMLVNPSLLLLDEPTSGLDSTTAARIVATLRSLARGGRT 273
Query: 348 VVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGCSPQIA-MNPAEFLLD 406
VVTTIHQPSSRL+ FDK+++L +G +Y G + M YF SIG P + +NPA+F+LD
Sbjct: 274 VVTTIHQPSSRLYRMFDKVLVLSEGCPIYSGDSGRVMEYFGSIGYQPGSSFVNPADFVLD 333
Query: 407 LANGNLHDVSVPSELQ-----DRVQTENSENDTANGKPTPAIVHEYLVEAYETRVAENEK 461
LANG D +++ DR++ +NS V + L+ +Y+ + K
Sbjct: 334 LANGITSDTKQYDQIETNGRLDRLEEQNS-------------VKQSLISSYKKNLYPPLK 380
Query: 462 KKLMAPIPLDE-EIKAKVSSPKRNWGASWIQQYTILFRRGIKEHRHDYFSWLRITQVLAT 520
+++ P D+ + + + W SW Q+++L +RG+KE H+ FS LRI V++
Sbjct: 381 EEVSRTFPQDQTNARLRKKAITNRWPTSWWMQFSVLLKRGLKERSHESFSGLRIFMVMSV 440
Query: 521 AVILGLLWWQSDSKSPKGLEDQAGLLFFIAVFWSFFPIFTAIFTFPQERAMLSKERAADM 580
+++ GLLWW S L+DQ GLLFF ++FW FFP+F AIFTFPQER ML KER++ +
Sbjct: 441 SLLSGLLWWHSRVAH---LQDQVGLLFFFSIFWGFFPLFNAIFTFPQERPMLIKERSSGI 497
Query: 581 YRLSAYFLARTTSDLPLNLVLPVLFLVIVYFMAGLRMGAGPFFLSMLTVFLSIVAAQGLG 640
YRLS+Y++ART DLP+ L+LP +F+ I Y+M GL+ F ++++ V +++ AQG+G
Sbjct: 498 YRLSSYYIARTVGDLPMELILPTIFVTITYWMGGLKPSLTTFIMTLMIVLYNVLVAQGVG 557
Query: 641 LAIGAILMDLKKATTLASVTIMTFMLAGGYFVQEVPVFISWIRYMSFNFHTYKILLKIQY 700
LA+GAILMD KKA TL+SV ++ F+LAGGY++Q +P FI+W++Y+SF+ + YK+L+ +QY
Sbjct: 558 LALGAILMDAKKAATLSSVLMLVFLLAGGYYIQHIPGFIAWLKYVSFSHYCYKLLVGVQY 617
Query: 701 A----------------DISPIVNGMRTDSGFREVCALVAMVFGYRLLAYLSLRKM 740
D I N +R + +V AL M+ YR+LAYL+LR +
Sbjct: 618 TWDEVYECGSGLHCSVMDYEGIKN-LRIGNMMWDVLALAVMLLLYRVLAYLALRNL 672
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q4GZT4|ABCG2_BOVIN ATP-binding cassette sub-family G member 2 OS=Bos taurus GN=ABCG2 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 310 bits (793), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 193/583 (33%), Positives = 318/583 (54%), Gaps = 22/583 (3%)
Query: 150 LKFTDVTYKVILKG----MTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSG 205
L F ++ Y+V +K + EK+IL I G + PG + A++GP+G GK++LL++L+
Sbjct: 36 LSFHNICYRVKVKTGFLLCRKTIEKEILANINGVMKPG-LNAILGPTGGGKSSLLDILAA 94
Query: 206 RLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQ 265
R + G + N P + K G+V QDDV+ LTV+E L ++A LRLP T+T
Sbjct: 95 RKDPHGLSGDVLINGAPRPANFKCNSGYVVQDDVVMGTLTVRENLQFSAALRLPTTMTSY 154
Query: 266 QKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSG 325
+K +R VI ELGL++ D+ +G F+RGVSGGERKR I E+I +PS+LFLDEPT+G
Sbjct: 155 EKNERINKVIQELGLDKVADSKVGTQFIRGVSGGERKRTSIAMELITDPSILFLDEPTTG 214
Query: 326 LDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385
LDS+TA ++ +L+ +++ G+T++ +IHQP +F FD L LL G L++ G A EA+
Sbjct: 215 LDSSTANAVLLLLKRMSKQGRTIIFSIHQPRYSIFKLFDSLTLLASGRLMFHGPAQEALG 274
Query: 386 YFSSIGCSPQIAMNPAEFLLDLANGNLHDVSVPSELQDRVQTENSENDTANGKPTPAIVH 445
YF +IG + NPA+F LD+ NG+ V + E + E +E + + K TP I
Sbjct: 275 YFGAIGFRCEPYNNPADFFLDIINGDSSAVVLNRE---DIGDEANETEEPSKKDTPLI-- 329
Query: 446 EYLVEAYETRVAENEKKKLMAPIPLDEEIKAKVSSPKRNWGASWIQQYTILFRRGIKEHR 505
E L E Y E K + D+ K S + + S+ Q + RR K
Sbjct: 330 EKLAEFYVNSSFFKETKVELDKFSGDQRRKKLPSYKEVTYATSFCHQLKWISRRSFKNLL 389
Query: 506 HDYFSWLRITQVLAT---AVILGLLWWQSDSKSPKGLEDQAGLLFFIAVFWSFFPIFTAI 562
+ I Q++ T +++G +++ + P G++++AG+LFF+ F + +A+
Sbjct: 390 GN--PQASIAQLIVTVFLGLVIGAIFYDLKN-DPAGIQNRAGVLFFLTTNQCFSSV-SAV 445
Query: 563 FTFPQERAMLSKERAADMYRLSAYFLARTTSD-LPLNLVLPVLFLVIVYFMAGLRMGAGP 621
E+ + E + YR+S+YF + SD LP+ ++ ++F I YF+ GL+
Sbjct: 446 ELLVVEKKLFIHEYISGYYRVSSYFFGKLLSDLLPMRMLPSIIFTCITYFLLGLKPKVEA 505
Query: 622 FFLSMLTVFLSIVAAQGLGLAIGAILMDLKKATTLASVTIMTFMLAGGYFV--QEVPVFI 679
FF+ MLT+ + +A + LAI A + AT L +++ + M+ G V + V ++
Sbjct: 506 FFIMMLTLMMVAYSASSMALAIAAGQSVVSIATLLMTISFVFMMIFSGLLVNLKTVVPWL 565
Query: 680 SWIRYMSFNFHTYKILLKIQY--ADISPIVNGMRTDSGFREVC 720
SW++Y+S + Y L ++ + P +N ++ +C
Sbjct: 566 SWLQYLSIPRYGYAALQHNEFLGQNFCPGLNVTTNNTCSYAIC 608
|
Xenobiotic transporter that may play an important role in the exclusion of xenobiotics from the brain. May be involved in brain-to-blood efflux. Bos taurus (taxid: 9913) |
| >sp|Q7TMS5|ABCG2_MOUSE ATP-binding cassette sub-family G member 2 OS=Mus musculus GN=Abcg2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 307 bits (787), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 205/628 (32%), Positives = 326/628 (51%), Gaps = 46/628 (7%)
Query: 150 LKFTDVTYKVILKG---MTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGR 206
L F +TY+V +K + + EK+IL+ I G + PG + A++GP+G GK++LL++L+ R
Sbjct: 37 LSFHHITYRVKVKSGFLVRKTVEKEILSDINGIMKPG-LNAILGPTGGGKSSLLDVLAAR 95
Query: 207 LMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQ 266
+ G + N P K G+V QDDV+ LTV+E L ++A LRLP T+ +
Sbjct: 96 KDPKGLSGDVLINGAPQPAHFKCCSGYVVQDDVVMGTLTVRENLQFSAALRLPTTMKNHE 155
Query: 267 KEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGL 326
K +R +I ELGLE+ D+ +G F+RG+SGGERKR IG E+I +PS+LFLDEPT+GL
Sbjct: 156 KNERINTIIKELGLEKVADSKVGTQFIRGISGGERKRTSIGMELITDPSILFLDEPTTGL 215
Query: 327 DSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAY 386
DS+TA ++ +L+ +++ G+T++ +IHQP +F FD L LL G L++ G A +A+ Y
Sbjct: 216 DSSTANAVLLLLKRMSKQGRTIIFSIHQPRYSIFKLFDSLTLLASGKLVFHGPAQKALEY 275
Query: 387 FSSIGCSPQIAMNPAEFLLDLANGNLHDVSVPSELQDRVQTENSENDTANGKPTPAIVHE 446
F+S G + NPA+F LD+ NG+ V + E QD + +E + KP V E
Sbjct: 276 FASAGYHCEPYNNPADFFLDVINGDSSAVMLNREEQDN-EANKTEEPSKGEKP----VIE 330
Query: 447 YLVEAYETRVAENEKKKLMAPIPLDEEIKAKVSSPKRNWGASWIQQYTILFRRGIKEHRH 506
L E Y E K + +P +E K + + + S+ Q + RR K
Sbjct: 331 NLSEFYINSAIYGETKAELDQLPGAQEKKGTSAFKEPVYVTSFCHQLRWIARRSFKNLLG 390
Query: 507 DYFSWLRITQVLATAVILGLL---WWQSDSKSPKGLEDQAGLLFFIAVFWSFFPIFTAIF 563
+ + Q++ T VILGL+ + G++++AG+LFF+ F + +A+
Sbjct: 391 N--PQASVAQLIVT-VILGLIIGAIYFDLKYDAAGMQNRAGVLFFLTTNQCFSSV-SAVE 446
Query: 564 TFPQERAMLSKERAADMYRLSAYFLARTTSD-LPLNLVLPVLFLVIVYFMAGLRMGAGPF 622
F E+ + E + YR+S+YF + SD LP+ + V+F ++YFM GL+ F
Sbjct: 447 LFVVEKKLFIHEYISGYYRVSSYFFGKVMSDLLPMRFLPSVIFTCVLYFMLGLKKTVDAF 506
Query: 623 FLSMLTVFLSIVAAQGLGLAIGAILMDLKKATTLASVTIMTFMLAGGYFV--QEVPVFIS 680
F+ M T+ + A + LAI + AT L ++ + ML G V + + ++S
Sbjct: 507 FIMMFTLIMVAYTASSMALAIATGQSVVSVATLLMTIAFVFMMLFSGLLVNLRTIGPWLS 566
Query: 681 WIRYMS-----FNFHTYKILLKIQYA------DISPIVNGMRTDSG-------------- 715
W++Y S F Y L ++ D S VN +G
Sbjct: 567 WLQYFSIPRYGFTALQYNEFLGQEFCPGFNVTDNSTCVNSYAICTGNEYLINQGIELSPW 626
Query: 716 --FREVCALVAMVFGYRLLAYLSLRKMK 741
++ AL M+ + +AYL L +K
Sbjct: 627 GLWKNHVALACMIIIFLTIAYLKLLFLK 654
|
Xenobiotic transporter that may play an important role in the exclusion of xenobiotics from the brain. May be involved in brain-to-blood efflux (By similarity). May play a role in early stem cell self-renewal by blocking differentiation. Mus musculus (taxid: 10090) |
| >sp|Q9UNQ0|ABCG2_HUMAN ATP-binding cassette sub-family G member 2 OS=Homo sapiens GN=ABCG2 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 306 bits (784), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 191/547 (34%), Positives = 305/547 (55%), Gaps = 21/547 (3%)
Query: 150 LKFTDVTYKVILKG----MTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSG 205
L F ++ Y+V LK EK+IL+ I G + PG + A++GP+G GK++LL++L+
Sbjct: 37 LSFHNICYRVKLKSGFLPCRKPVEKEILSNINGIMKPG-LNAILGPTGGGKSSLLDVLAA 95
Query: 206 RLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQ 265
R + G + N P + K G+V QDDV+ LTV+E L ++A LRL T+T
Sbjct: 96 RKDPSGLSGDVLINGAPRPANFKCNSGYVVQDDVVMGTLTVRENLQFSAALRLATTMTNH 155
Query: 266 QKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSG 325
+K +R VI ELGL++ D+ +G F+RGVSGGERKR IG E+I +PS+LFLDEPT+G
Sbjct: 156 EKNERINRVIQELGLDKVADSKVGTQFIRGVSGGERKRTSIGMELITDPSILFLDEPTTG 215
Query: 326 LDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385
LDS+TA ++ +L+ +++ G+T++ +IHQP +F FD L LL G L++ G A EA+
Sbjct: 216 LDSSTANAVLLLLKRMSKQGRTIIFSIHQPRYSIFKLFDSLTLLASGRLMFHGPAQEALG 275
Query: 386 YFSSIGCSPQIAMNPAEFLLDLANGNLHDVSVPSELQDRVQTENSENDTANGKPTPAIVH 445
YF S G + NPA+F LD+ NG+ V++ E +D TE E + KP +
Sbjct: 276 YFESAGYHCEAYNNPADFFLDIINGDSTAVALNRE-EDFKATEIIE-PSKQDKP----LI 329
Query: 446 EYLVEAYETRVAENEKKKLMAPIPLDEEIKAKVSSPKRNWGASWIQQYTILFRRGIKEHR 505
E L E Y E K + + E+ K + ++ S+ Q + +R K
Sbjct: 330 EKLAEIYVNSSFYKETKAELHQLSGGEKKKKITVFKEISYTTSFCHQLRWVSKRSFKNLL 389
Query: 506 HDYFSWLRITQVLATAV---ILGLLWWQSDSKSPKGLEDQAGLLFFIAVFWSFFPIFTAI 562
+ I Q++ T V ++G +++ + S G++++AG+LFF+ F + +A+
Sbjct: 390 GN--PQASIAQIIVTVVLGLVIGAIYFGLKNDS-TGIQNRAGVLFFLTTNQCFSSV-SAV 445
Query: 563 FTFPQERAMLSKERAADMYRLSAYFLARTTSD-LPLNLVLPVLFLVIVYFMAGLRMGAGP 621
F E+ + E + YR+S+YFL + SD LP+ ++ ++F IVYFM GL+ A
Sbjct: 446 ELFVVEKKLFIHEYISGYYRVSSYFLGKLLSDLLPMRMLPSIIFTCIVYFMLGLKPKADA 505
Query: 622 FFLSMLTVFLSIVAAQGLGLAIGAILMDLKKATTLASVTIMTFMLAGGYFVQ--EVPVFI 679
FF+ M T+ + +A + LAI A + AT L ++ + M+ G V + ++
Sbjct: 506 FFVMMFTLMMVAYSASSMALAIAAGQSVVSVATLLMTICFVFMMIFSGLLVNLTTIASWL 565
Query: 680 SWIRYMS 686
SW++Y S
Sbjct: 566 SWLQYFS 572
|
Xenobiotic transporter that may play an important role in the exclusion of xenobiotics from the brain. May be involved in brain-to-blood efflux. Appears to play a major role in the multidrug resistance phenotype of several cancer cell lines. When overexpressed, the transfected cells become resistant to mitoxantrone, daunorubicin and doxorubicin, display diminished intracellular accumulation of daunorubicin, and manifest an ATP-dependent increase in the efflux of rhodamine 123. Homo sapiens (taxid: 9606) |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 746 | ||||||
| 224138238 | 744 | white-brown-complex ABC transporter fami | 0.990 | 0.993 | 0.838 | 0.0 | |
| 255566225 | 749 | ATP-binding cassette transporter, putati | 0.995 | 0.991 | 0.825 | 0.0 | |
| 356500545 | 743 | PREDICTED: ABC transporter G family memb | 0.989 | 0.993 | 0.828 | 0.0 | |
| 356534584 | 738 | PREDICTED: ABC transporter G family memb | 0.985 | 0.995 | 0.819 | 0.0 | |
| 356570916 | 736 | PREDICTED: ABC transporter G family memb | 0.978 | 0.991 | 0.805 | 0.0 | |
| 356505453 | 740 | PREDICTED: ABC transporter G family memb | 0.987 | 0.995 | 0.797 | 0.0 | |
| 296089333 | 738 | unnamed protein product [Vitis vinifera] | 0.983 | 0.994 | 0.822 | 0.0 | |
| 224091479 | 743 | white-brown-complex ABC transporter fami | 0.990 | 0.994 | 0.825 | 0.0 | |
| 297810759 | 750 | abc transporter family protein [Arabidop | 0.990 | 0.985 | 0.769 | 0.0 | |
| 449437512 | 749 | PREDICTED: ABC transporter G family memb | 0.997 | 0.993 | 0.793 | 0.0 |
| >gi|224138238|ref|XP_002322764.1| white-brown-complex ABC transporter family [Populus trichocarpa] gi|222867394|gb|EEF04525.1| white-brown-complex ABC transporter family [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1269 bits (3284), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 625/745 (83%), Positives = 691/745 (92%), Gaps = 6/745 (0%)
Query: 1 MEKPVSSTSLARTKSDQLVETLSAAFKSPVSSETAGASDG--GGTLSRKSSRRMLTAASP 58
MEK +TSLART+S+QLVET++AAFKSP ++E G SDG GGTLSRKSS+R++ AASP
Sbjct: 1 MEK--ENTSLARTRSEQLVETVAAAFKSPSNNEAIGVSDGSSGGTLSRKSSKRLMMAASP 58
Query: 59 GRAGASG-RNTHIRKSRSAQLKLELDEVSSGAALSRASSASLGLSFSFTGFTMPPDEIAD 117
GR+ + G +NTHIRKSRSAQ+K +LD+VSSGAALSRASSASLG SFSFTGF MPPDEIAD
Sbjct: 59 GRSTSGGNKNTHIRKSRSAQMKFDLDDVSSGAALSRASSASLGFSFSFTGFNMPPDEIAD 118
Query: 118 SKPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFTDVTYKVILKGMTSSEEKDILNGIT 177
SKPFSDDDIPED+EAGTR +PKFQTEPTLPIYLKFTDVTYKVI+KGMTS+EEKDIL GI+
Sbjct: 119 SKPFSDDDIPEDLEAGTR-KPKFQTEPTLPIYLKFTDVTYKVIIKGMTSTEEKDILYGIS 177
Query: 178 GSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQD 237
GSV+PGEVLALMGPSGSGKTTLLNL+ GRL + TVGGS+TYND PYSK LKS+IGFVTQD
Sbjct: 178 GSVDPGEVLALMGPSGSGKTTLLNLIGGRLNQTTVGGSLTYNDQPYSKFLKSRIGFVTQD 237
Query: 238 DVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVS 297
DVLFPHLTVKETLTYAALLRLP TLTK+QK+KRAIDVI ELGLERCQDTMIGGSFVRGVS
Sbjct: 238 DVLFPHLTVKETLTYAALLRLPKTLTKEQKQKRAIDVIYELGLERCQDTMIGGSFVRGVS 297
Query: 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSS 357
GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQ+LQDIAE GKTVVTTIHQPSS
Sbjct: 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQLLQDIAEGGKTVVTTIHQPSS 357
Query: 358 RLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGCSPQIAMNPAEFLLDLANGNLHDVSV 417
RLFHKFDKLILLGKGSLLYFGKASEAM YFSSIGC+P IAMNPAEFLLDLANGN++DVSV
Sbjct: 358 RLFHKFDKLILLGKGSLLYFGKASEAMLYFSSIGCNPLIAMNPAEFLLDLANGNINDVSV 417
Query: 418 PSELQDRVQTENSENDTANGKPTPAIVHEYLVEAYETRVAENEKKKLMAPIPLDEEIKAK 477
PSEL+D+VQ NSE +T NGKP+PA+VHEYLVEAYETRVA+ EKKKLM PIPLDEE+K+K
Sbjct: 418 PSELEDKVQIGNSEAETRNGKPSPAVVHEYLVEAYETRVADKEKKKLMVPIPLDEEVKSK 477
Query: 478 VSSPKRNWGASWIQQYTILFRRGIKEHRHDYFSWLRITQVLATAVILGLLWWQSDSKSPK 537
VSS KR WGASW +QYTILF RGIKE RHDYFSWLRITQVL+TA+ILGLLWW+SDS SPK
Sbjct: 478 VSSRKRQWGASWWEQYTILFCRGIKERRHDYFSWLRITQVLSTAIILGLLWWKSDSSSPK 537
Query: 538 GLEDQAGLLFFIAVFWSFFPIFTAIFTFPQERAMLSKERAADMYRLSAYFLARTTSDLPL 597
GL+DQAGLLFFIAVFW FFP+FTAIFTFPQERAMLSKERAADMYRLSAYFLARTTSDLPL
Sbjct: 538 GLQDQAGLLFFIAVFWGFFPVFTAIFTFPQERAMLSKERAADMYRLSAYFLARTTSDLPL 597
Query: 598 NLVLPVLFLVIVYFMAGLRMGAGPFFLSMLTVFLSIVAAQGLGLAIGAILMDLKKATTLA 657
+L+LPVLFL++VYFMAGLR+ A PFFL+MLTVFL IVAAQGLGLAIGA LMDLK+ATTLA
Sbjct: 598 DLILPVLFLLVVYFMAGLRLSAAPFFLTMLTVFLCIVAAQGLGLAIGATLMDLKRATTLA 657
Query: 658 SVTIMTFMLAGGYFVQEVPVFISWIRYMSFNFHTYKILLKIQYADISPIVNGMRTDSGFR 717
SVT+MTFMLAGGYFV++VPVF+SWIRYMSFN+HTYK+LLK+QY ++P +NG+ D G
Sbjct: 658 SVTVMTFMLAGGYFVKKVPVFVSWIRYMSFNYHTYKLLLKVQYEHMTPAINGIGIDGGLT 717
Query: 718 EVCALVAMVFGYRLLAYLSLRKMKL 742
EV ALVAMVFGYRLLAY+SLR+MKL
Sbjct: 718 EVSALVAMVFGYRLLAYISLRRMKL 742
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255566225|ref|XP_002524100.1| ATP-binding cassette transporter, putative [Ricinus communis] gi|223536668|gb|EEF38310.1| ATP-binding cassette transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1264 bits (3271), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 618/749 (82%), Positives = 691/749 (92%), Gaps = 6/749 (0%)
Query: 1 MEKPVSSTSLARTKSDQLVETLSAAFKSPVSSETAGA----SDGGGTLSRKSSRRMLTAA 56
MEK S TSL RTKSDQLVETL+AAFKSP ++E A A ++ GTLSRKSS+R++ AA
Sbjct: 1 MEK-TSVTSLVRTKSDQLVETLAAAFKSPPTNEAAAAGGTSTESSGTLSRKSSKRLMVAA 59
Query: 57 SPGRAGASGRNTHIRKSRSAQLKLELDEVSSGAALSRASSASLGLSFSFTGFTMPPDEIA 116
SPGR+ SG+NTHIRK+RSAQ+K +LD+++SGAALSRASSASLGLSFSFTGF +P DEIA
Sbjct: 60 SPGRSNGSGKNTHIRKTRSAQMKFDLDDLNSGAALSRASSASLGLSFSFTGFAVPQDEIA 119
Query: 117 DSKPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFTDVTYKVILKGMTSSEEKDILNGI 176
D+KPFSDDDIPED+EAG R +PKFQTEPTLPIYLKFTDVTYKVI+KG+ S+EEKDILNGI
Sbjct: 120 DTKPFSDDDIPEDLEAGMR-KPKFQTEPTLPIYLKFTDVTYKVIIKGIASTEEKDILNGI 178
Query: 177 TGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQ 236
+GSV+PG+VLALMGPSGSGKT+LLNLLSGRL+ TVGG+ITYND PY K+LKS+IGFVTQ
Sbjct: 179 SGSVDPGQVLALMGPSGSGKTSLLNLLSGRLIHQTVGGTITYNDQPYCKNLKSRIGFVTQ 238
Query: 237 DDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGV 296
DDVLFPHLTVKETLTYAA LRLP TLT++QKEKRA+DVI ELGLERCQDTMIGGSFVRGV
Sbjct: 239 DDVLFPHLTVKETLTYAARLRLPKTLTREQKEKRALDVIYELGLERCQDTMIGGSFVRGV 298
Query: 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPS 356
SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPS
Sbjct: 299 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPS 358
Query: 357 SRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGCSPQIAMNPAEFLLDLANGNLHDVS 416
SRLFHKFDKLILLGKGSLLYFGKASE M YFSSIGC+P IAMNPAEFLLDLANGN++DVS
Sbjct: 359 SRLFHKFDKLILLGKGSLLYFGKASETMPYFSSIGCNPLIAMNPAEFLLDLANGNINDVS 418
Query: 417 VPSELQDRVQTENSENDTANGKPTPAIVHEYLVEAYETRVAENEKKKLMAPIPLDEEIKA 476
VPSEL+DRVQ NS+ DT NGKP+P++VHEYLVEAYETRVAE EKKK+M PIPLDEE+K
Sbjct: 419 VPSELEDRVQMGNSDIDTGNGKPSPSVVHEYLVEAYETRVAEMEKKKIMVPIPLDEEVKL 478
Query: 477 KVSSPKRNWGASWIQQYTILFRRGIKEHRHDYFSWLRITQVLATAVILGLLWWQSDSKSP 536
KV+SPKR WGASW QQ+TIL RGIKE RHDYFSWLRITQVL+TAVILGLLWWQS+S+S
Sbjct: 479 KVASPKRLWGASWWQQFTILLCRGIKERRHDYFSWLRITQVLSTAVILGLLWWQSNSRSL 538
Query: 537 KGLEDQAGLLFFIAVFWSFFPIFTAIFTFPQERAMLSKERAADMYRLSAYFLARTTSDLP 596
KGL+DQ+GLLFFIAVFW FFP+FTAIFTFPQERAML+KERAADMYRLSAYFLARTTSDLP
Sbjct: 539 KGLQDQSGLLFFIAVFWGFFPVFTAIFTFPQERAMLNKERAADMYRLSAYFLARTTSDLP 598
Query: 597 LNLVLPVLFLVIVYFMAGLRMGAGPFFLSMLTVFLSIVAAQGLGLAIGAILMDLKKATTL 656
L+L+LPVLFL++VYFMAGLRM AGPFFLS+LTVFL IVAAQGLGLAIGA LMDLKKATTL
Sbjct: 599 LDLILPVLFLLVVYFMAGLRMSAGPFFLSLLTVFLCIVAAQGLGLAIGATLMDLKKATTL 658
Query: 657 ASVTIMTFMLAGGYFVQEVPVFISWIRYMSFNFHTYKILLKIQYADISPIVNGMRTDSGF 716
ASVT+MTFMLAGGYFV++VP+F++WIRY+SFN+HTYK+LLK+QY DISP +NG+R +G
Sbjct: 659 ASVTVMTFMLAGGYFVKKVPIFVAWIRYLSFNYHTYKLLLKVQYEDISPPINGIRIGNGV 718
Query: 717 REVCALVAMVFGYRLLAYLSLRKMKLHFG 745
EV ALVAMVFGYRLLAY+SLRKMK + G
Sbjct: 719 TEVSALVAMVFGYRLLAYISLRKMKFNCG 747
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356500545|ref|XP_003519092.1| PREDICTED: ABC transporter G family member 22-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1250 bits (3234), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 622/751 (82%), Positives = 681/751 (90%), Gaps = 13/751 (1%)
Query: 1 MEKPVSSTSLARTKSDQLVETLSAAFKSPVSSETA--GASDGGGTLSRKSSRRMLTAASP 58
MEK ++TSL RTKSDQLVE++ AA KSP SS+ + G +GGGT+SRKSSRR LT ASP
Sbjct: 1 MEK--ANTSLVRTKSDQLVESMVAALKSPASSDHSANGVVEGGGTISRKSSRR-LTGASP 57
Query: 59 GRAGASGRNTHIRKSRSAQ---LKLELDEVSSGAALSRASSASLGLSFSFTGFTMPPDEI 115
GR G +NTHIRKSRSAQ +KLELD+VSSGAALSRASSASLGLSFSFTGFTMPP+EI
Sbjct: 58 GRGG---KNTHIRKSRSAQISQMKLELDDVSSGAALSRASSASLGLSFSFTGFTMPPEEI 114
Query: 116 ADSKPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFTDVTYKVILKGMTSSEEKDILNG 175
ADSKPFSDDDIPEDIE+G R KFQTEPTLPIYLKFTDVTYK+++KGMT++EEKDILNG
Sbjct: 115 ADSKPFSDDDIPEDIESGPRT--KFQTEPTLPIYLKFTDVTYKIVIKGMTTTEEKDILNG 172
Query: 176 ITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVT 235
ITGSVNPGEVLALMGPSGSGKTTLLNLL GRL P GGSITYND PYSK LKS+IGFVT
Sbjct: 173 ITGSVNPGEVLALMGPSGSGKTTLLNLLGGRLSHPISGGSITYNDQPYSKFLKSRIGFVT 232
Query: 236 QDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRG 295
QDDVLFPHLTVKETLTYAA LRLP T TK+QKEKRA+DVI ELGLERCQDTMIGGSFVRG
Sbjct: 233 QDDVLFPHLTVKETLTYAARLRLPKTYTKEQKEKRALDVIYELGLERCQDTMIGGSFVRG 292
Query: 296 VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQP 355
VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQP
Sbjct: 293 VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQP 352
Query: 356 SSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGCSPQIAMNPAEFLLDLANGNLHDV 415
SSRLFHKFDKLILLGKGSLLYFGKASEAM YF SIGCSP I+MNPAEFLLDLANGN++DV
Sbjct: 353 SSRLFHKFDKLILLGKGSLLYFGKASEAMTYFQSIGCSPLISMNPAEFLLDLANGNINDV 412
Query: 416 SVPSELQDRVQTENSENDTANGKPTPAIVHEYLVEAYETRVAENEKKKLMAPIPLDEEIK 475
S+PSEL+D+VQ N+E +T NGKP+PA+VHEYLVEAYETRVAE EKK+LM PIP+DE +K
Sbjct: 413 SLPSELEDKVQMGNAEAETLNGKPSPAVVHEYLVEAYETRVAETEKKRLMVPIPIDEALK 472
Query: 476 AKVSSPKRNWGASWIQQYTILFRRGIKEHRHDYFSWLRITQVLATAVILGLLWWQSDSKS 535
KV S KR WGASW +QY+ILF RGIKE RHDYFSWLRITQVL+TAVILGLLWWQSD+K+
Sbjct: 473 TKVCSHKRQWGASWDEQYSILFWRGIKERRHDYFSWLRITQVLSTAVILGLLWWQSDTKN 532
Query: 536 PKGLEDQAGLLFFIAVFWSFFPIFTAIFTFPQERAMLSKERAADMYRLSAYFLARTTSDL 595
PK L+DQAGLLFFIAVFW FFP+FTAIFTFPQERAMLSKERAADMYRLSAYFLARTTSDL
Sbjct: 533 PKDLQDQAGLLFFIAVFWGFFPVFTAIFTFPQERAMLSKERAADMYRLSAYFLARTTSDL 592
Query: 596 PLNLVLPVLFLVIVYFMAGLRMGAGPFFLSMLTVFLSIVAAQGLGLAIGAILMDLKKATT 655
PL+L+LPVLFL++VYFMAGLR+ PFFL++LTVFL IVAAQGLGLAIGA LMDLK+ATT
Sbjct: 593 PLDLILPVLFLLVVYFMAGLRLSVAPFFLTILTVFLCIVAAQGLGLAIGATLMDLKRATT 652
Query: 656 LASVTIMTFMLAGGYFVQEVPVFISWIRYMSFNFHTYKILLKIQYADISPIVNGMRTDSG 715
LASVT+MTFMLAGG+FVQ VP+F SWIRYMSFN+HTYK+LLK+QY ISP++NGMR DSG
Sbjct: 653 LASVTVMTFMLAGGFFVQRVPIFFSWIRYMSFNYHTYKLLLKVQYEHISPVINGMRIDSG 712
Query: 716 FREVCALVAMVFGYRLLAYLSLRKMKLHFGA 746
EV AL+AMVFGYR LAYLSLR+MKL GA
Sbjct: 713 ATEVAALIAMVFGYRFLAYLSLRRMKLQSGA 743
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356534584|ref|XP_003535833.1| PREDICTED: ABC transporter G family member 22-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1225 bits (3170), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 614/749 (81%), Positives = 671/749 (89%), Gaps = 14/749 (1%)
Query: 1 MEKPVSSTSLARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGR 60
MEK ++TSL RTKSDQL+E++ A KSP SS+ S G SRKSSR LT ASPGR
Sbjct: 1 MEK--ANTSLVRTKSDQLLESMVAGLKSPPSSD---HSANGVVDSRKSSR-WLTGASPGR 54
Query: 61 AGASGRNTHIRKSRSAQ---LKLELDEVSSGAALSRASSASLGLSFSFTGFTMPPDEIAD 117
G +NTHIRKSRSAQ +KLELD+VSSGAALSRASSASLGLSFSFTGFTMPP+EIAD
Sbjct: 55 GG---KNTHIRKSRSAQISQMKLELDDVSSGAALSRASSASLGLSFSFTGFTMPPEEIAD 111
Query: 118 SKPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFTDVTYKVILKGMTSSEEKDILNGIT 177
SKPFSDDDIPEDIEAG R KFQTEPTLPIYLKFTDVTYK+++KGMT++EEKDILNGIT
Sbjct: 112 SKPFSDDDIPEDIEAGPRT--KFQTEPTLPIYLKFTDVTYKIVIKGMTTTEEKDILNGIT 169
Query: 178 GSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQD 237
GSVNPGEVLALMGPSGSGKTTLLNLL GRL P GGSITYND PYSK LKS+IGFVTQD
Sbjct: 170 GSVNPGEVLALMGPSGSGKTTLLNLLGGRLSHPISGGSITYNDQPYSKFLKSRIGFVTQD 229
Query: 238 DVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVS 297
DVLFPHLTVKETLTYAA LRLP TK+QKEKRA+DVI ELGLERCQDTMIGGSFVRGVS
Sbjct: 230 DVLFPHLTVKETLTYAARLRLPKAYTKEQKEKRALDVIYELGLERCQDTMIGGSFVRGVS 289
Query: 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSS 357
GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSS
Sbjct: 290 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSS 349
Query: 358 RLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGCSPQIAMNPAEFLLDLANGNLHDVSV 417
RLFHKFDKLILLGKGSLLYFGKASE M YF SIGCSP I+MNPAEFLLDLANGN++DVS+
Sbjct: 350 RLFHKFDKLILLGKGSLLYFGKASETMTYFQSIGCSPLISMNPAEFLLDLANGNINDVSL 409
Query: 418 PSELQDRVQTENSENDTANGKPTPAIVHEYLVEAYETRVAENEKKKLMAPIPLDEEIKAK 477
PSEL+D+VQ N+E +T NGKP+PA+VHEYLVEAYETRVAE EKK+LM PIPLDE +K K
Sbjct: 410 PSELEDKVQMGNAEAETQNGKPSPAVVHEYLVEAYETRVAETEKKRLMVPIPLDEALKTK 469
Query: 478 VSSPKRNWGASWIQQYTILFRRGIKEHRHDYFSWLRITQVLATAVILGLLWWQSDSKSPK 537
V S KR WGASW +Q++ILF RGIKE RHDYFSWLRITQVL+TAVILGLLWWQSD+K+PK
Sbjct: 470 VCSHKRQWGASWDEQFSILFWRGIKERRHDYFSWLRITQVLSTAVILGLLWWQSDTKNPK 529
Query: 538 GLEDQAGLLFFIAVFWSFFPIFTAIFTFPQERAMLSKERAADMYRLSAYFLARTTSDLPL 597
L+DQAGLLFFIAVFW FFP+FTAIFTFPQERAMLSKERAADMYRLSAYFLARTTSDLPL
Sbjct: 530 DLQDQAGLLFFIAVFWGFFPVFTAIFTFPQERAMLSKERAADMYRLSAYFLARTTSDLPL 589
Query: 598 NLVLPVLFLVIVYFMAGLRMGAGPFFLSMLTVFLSIVAAQGLGLAIGAILMDLKKATTLA 657
+L+LPVLFL++VYFMAGLR+ PFFL++LTVFL IVAAQGLGLAIGA LMDLK+ATTLA
Sbjct: 590 DLILPVLFLLVVYFMAGLRLSVAPFFLTVLTVFLCIVAAQGLGLAIGATLMDLKRATTLA 649
Query: 658 SVTIMTFMLAGGYFVQEVPVFISWIRYMSFNFHTYKILLKIQYADISPIVNGMRTDSGFR 717
SVT+MTFMLAGG+FVQ VP+F SWIRYMSFN+HTYK+LLK+QY ISP++NG+R DSG
Sbjct: 650 SVTVMTFMLAGGFFVQRVPIFFSWIRYMSFNYHTYKLLLKVQYEHISPVINGIRIDSGAT 709
Query: 718 EVCALVAMVFGYRLLAYLSLRKMKLHFGA 746
EV AL+AMVFGYR LAYLSLR+MKL GA
Sbjct: 710 EVAALIAMVFGYRFLAYLSLRRMKLQSGA 738
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356570916|ref|XP_003553629.1| PREDICTED: ABC transporter G family member 22-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1209 bits (3129), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 597/741 (80%), Positives = 674/741 (90%), Gaps = 11/741 (1%)
Query: 6 SSTSLARTKSDQLVETL-SAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGAS 64
S++SLARTKSDQL+ET+ + A KSP S+E GGG LSRKSS RM TA+SPG G
Sbjct: 5 STSSLARTKSDQLLETVATTAEKSPPSAE------GGGVLSRKSSWRM-TASSPG--GGG 55
Query: 65 GRNTHIRKSRSAQLKLELDEVSSGAALSRASSASLGLSFSFTGFTMPPDEIADSKPFSDD 124
GRNT+IRK+RSAQLK+E+DEV SG ALSRASSASLGLSFSFTGFT+PPDEIADSKPFSDD
Sbjct: 56 GRNTYIRKARSAQLKVEVDEVGSGVALSRASSASLGLSFSFTGFTLPPDEIADSKPFSDD 115
Query: 125 DIPEDIEAGTRERPKFQTEPTLPIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGE 184
DIPEDIEAGT +PKFQTEPTLPIYLKFTDVTYKV++KG+T+++EKDIL GITGSVNPGE
Sbjct: 116 DIPEDIEAGT-PKPKFQTEPTLPIYLKFTDVTYKVVMKGITTTKEKDILKGITGSVNPGE 174
Query: 185 VLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHL 244
VLALMGPSGSGKT+LLNLL GRL++ T+GGSITYND PYSK LKS+IGFVTQDDVLFPHL
Sbjct: 175 VLALMGPSGSGKTSLLNLLGGRLIQSTIGGSITYNDQPYSKFLKSRIGFVTQDDVLFPHL 234
Query: 245 TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304
TVKETLTYAA LRLPNTLTK+QKEKRA++VI+ELGLERCQDTMIGGS+VRG+SGGERKRV
Sbjct: 235 TVKETLTYAARLRLPNTLTKEQKEKRALEVIDELGLERCQDTMIGGSYVRGISGGERKRV 294
Query: 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFD 364
CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFD
Sbjct: 295 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFD 354
Query: 365 KLILLGKGSLLYFGKASEAMAYFSSIGCSPQIAMNPAEFLLDLANGNLHDVSVPSELQDR 424
KLILLGKGSLLYFGKAS+AM YF IGC+P IAMNPAEFLLDLANGN++D+SVPSEL+D
Sbjct: 355 KLILLGKGSLLYFGKASDAMDYFQFIGCAPLIAMNPAEFLLDLANGNVNDISVPSELKDI 414
Query: 425 VQTENSENDTANGKPTPAIVHEYLVEAYETRVAENEKKKLMAPIPLDEEIKAKVSSPKRN 484
VQ N+E +T NGKP+ ++V EYLVEAY++RVAE EK KLM P+PLD E+K+KV S KR
Sbjct: 415 VQVGNAEAETCNGKPSASVVQEYLVEAYDSRVAEIEKTKLMVPVPLDVELKSKVCSCKRQ 474
Query: 485 WGASWIQQYTILFRRGIKEHRHDYFSWLRITQVLATAVILGLLWWQSDSKSPKGLEDQAG 544
WGASW +Q++ILF RG KE RHDYFSWLRITQVLATAVILGLLWWQSD+K+PKGL+DQAG
Sbjct: 475 WGASWFEQFSILFSRGFKERRHDYFSWLRITQVLATAVILGLLWWQSDAKTPKGLQDQAG 534
Query: 545 LLFFIAVFWSFFPIFTAIFTFPQERAMLSKERAADMYRLSAYFLARTTSDLPLNLVLPVL 604
LLFFIAVFW FFP+FTAIFTFPQERAML+KER DMYRLSAYF+ARTTSDL L+LVLPV
Sbjct: 535 LLFFIAVFWGFFPVFTAIFTFPQERAMLTKERTTDMYRLSAYFVARTTSDLLLDLVLPVF 594
Query: 605 FLVIVYFMAGLRMGAGPFFLSMLTVFLSIVAAQGLGLAIGAILMDLKKATTLASVTIMTF 664
FL++VYFMA LR+G+G FF S+LTVFL I+AAQGLGLAIGA LMDLK+ATTLASVT+MTF
Sbjct: 595 FLLLVYFMANLRLGSGRFFFSILTVFLCIIAAQGLGLAIGATLMDLKRATTLASVTVMTF 654
Query: 665 MLAGGYFVQEVPVFISWIRYMSFNFHTYKILLKIQYADISPIVNGMRTDSGFREVCALVA 724
MLAGG+FV++VP+FISWIRY+SFN+HTYK+LLK+QY I+P ++G+R DSGFREV AL A
Sbjct: 655 MLAGGFFVKKVPIFISWIRYISFNYHTYKLLLKVQYEHITPTIDGIRIDSGFREVAALTA 714
Query: 725 MVFGYRLLAYLSLRKMKLHFG 745
MVFGYRLLAYLSLR+MKL G
Sbjct: 715 MVFGYRLLAYLSLRRMKLQAG 735
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356505453|ref|XP_003521505.1| PREDICTED: ABC transporter G family member 22-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1208 bits (3126), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 596/747 (79%), Positives = 674/747 (90%), Gaps = 10/747 (1%)
Query: 1 MEKPVSSTSLARTKSDQL-VETL-SAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASP 58
ME +S+SLARTKSDQL VET+ + A KSP S+E GGG LSRKSS RM A SP
Sbjct: 1 MENASTSSSLARTKSDQLAVETVATTAEKSPPSAE------GGGALSRKSSWRMTAAPSP 54
Query: 59 GRAGASGRNTHIRKSRSAQLKLELDEVSSGAALSRASSASLGLSFSFTGFTMPPDEIADS 118
G G RNT+IRK+RSAQLK+E+DEV SG ALSRASSASLGLSFSFTGFT+PPDEIADS
Sbjct: 55 GGGGGG-RNTYIRKARSAQLKVEVDEVGSGVALSRASSASLGLSFSFTGFTLPPDEIADS 113
Query: 119 KPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFTDVTYKVILKGMTSSEEKDILNGITG 178
KPFSDDDIPEDIEAGT +PKFQTEPTLPIYLKFTDVTYK+++KG+T+++EKDIL GITG
Sbjct: 114 KPFSDDDIPEDIEAGT-PKPKFQTEPTLPIYLKFTDVTYKLVMKGITTTKEKDILKGITG 172
Query: 179 SVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDD 238
SVNPGEVLALMGPSGSGKT+LLNLL GRL++ T+GGSITYND PYSK LKS+IGFVTQDD
Sbjct: 173 SVNPGEVLALMGPSGSGKTSLLNLLGGRLIQCTIGGSITYNDQPYSKFLKSRIGFVTQDD 232
Query: 239 VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSG 298
VLFPHLTVKETLTYAALLRLPNTL K+QKEKRA++VI ELGLERCQDTMIGGS+VRG+SG
Sbjct: 233 VLFPHLTVKETLTYAALLRLPNTLRKEQKEKRALEVIEELGLERCQDTMIGGSYVRGISG 292
Query: 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSR 358
GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSR
Sbjct: 293 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSR 352
Query: 359 LFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGCSPQIAMNPAEFLLDLANGNLHDVSVP 418
LFHKFDKLILLGKGSLLYFGKAS+AM YF IGC+P IAMNPAEFLLDLANGN++D+SVP
Sbjct: 353 LFHKFDKLILLGKGSLLYFGKASDAMDYFQFIGCAPLIAMNPAEFLLDLANGNVNDISVP 412
Query: 419 SELQDRVQTENSENDTANGKPTPAIVHEYLVEAYETRVAENEKKKLMAPIPLDEEIKAKV 478
SEL+D+VQ N+E +T+NGKP+ ++V EYLVEAY++RVAE EK KLM P+PLDEE+K+KV
Sbjct: 413 SELKDKVQMGNAEAETSNGKPSASVVQEYLVEAYDSRVAEIEKTKLMIPVPLDEELKSKV 472
Query: 479 SSPKRNWGASWIQQYTILFRRGIKEHRHDYFSWLRITQVLATAVILGLLWWQSDSKSPKG 538
S KR WGASW +Q++ILF RG +E RHDYFSWLRITQVLATAVILGLLWWQSD+K+PKG
Sbjct: 473 CSCKRQWGASWFEQFSILFSRGFRERRHDYFSWLRITQVLATAVILGLLWWQSDAKTPKG 532
Query: 539 LEDQAGLLFFIAVFWSFFPIFTAIFTFPQERAMLSKERAADMYRLSAYFLARTTSDLPLN 598
L+DQAGLLFFIAVFW FFP+FTAIFTFPQERAML+KER DMYRLSAYF+ARTTSDL L+
Sbjct: 533 LQDQAGLLFFIAVFWGFFPVFTAIFTFPQERAMLTKERTTDMYRLSAYFVARTTSDLLLD 592
Query: 599 LVLPVLFLVIVYFMAGLRMGAGPFFLSMLTVFLSIVAAQGLGLAIGAILMDLKKATTLAS 658
LVLPV FL++VYFMA LR+G+G FF S+LTVFL I+AAQGLGLAIGA LMDLK+ATTLAS
Sbjct: 593 LVLPVFFLLVVYFMANLRLGSGRFFFSILTVFLCIIAAQGLGLAIGATLMDLKRATTLAS 652
Query: 659 VTIMTFMLAGGYFVQEVPVFISWIRYMSFNFHTYKILLKIQYADISPIVNGMRTDSGFRE 718
VT+MTFMLAGG+FV++VP+FISWIRY+SFN+HTYK+LLK+QY I+P ++G+R DSGF E
Sbjct: 653 VTVMTFMLAGGFFVKKVPIFISWIRYISFNYHTYKLLLKVQYEHITPTIDGIRIDSGFTE 712
Query: 719 VCALVAMVFGYRLLAYLSLRKMKLHFG 745
V AL AMVFGYRLLAYLSLR+MKL G
Sbjct: 713 VAALTAMVFGYRLLAYLSLRRMKLLAG 739
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296089333|emb|CBI39105.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1201 bits (3106), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 607/738 (82%), Positives = 672/738 (91%), Gaps = 4/738 (0%)
Query: 12 RTKSDQLVETLSAA---FKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNT 68
RTKSDQLVET A +SP S E G ++ GGTLSRKSSRR + +ASPGRAG + +NT
Sbjct: 2 RTKSDQLVETAEAVAAAMRSPTSGEATGGAESGGTLSRKSSRRSMMSASPGRAGGNSKNT 61
Query: 69 HIRKSRSAQLKLELDEVSSGAALSRASSASLGLSFSFTGFTMPPDEIADSKPFSDDDIPE 128
HIRKSRSAQ+KL+LDEVSSGAALSRASSASLG SFSFTGFT+PPDEI+D KPFSDDD P+
Sbjct: 62 HIRKSRSAQIKLDLDEVSSGAALSRASSASLGFSFSFTGFTVPPDEISDFKPFSDDDTPD 121
Query: 129 DIEAGTRERPKFQTEPTLPIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLAL 188
D+EAG R++ + Q EPTLPIYLKF DVTYKVILKGM ++ EK+ILNGITGSVNPGEVLAL
Sbjct: 122 DLEAGMRKQ-RIQAEPTLPIYLKFKDVTYKVILKGMRTNVEKEILNGITGSVNPGEVLAL 180
Query: 189 MGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKE 248
MGPSGSGKTTLLNLL GRL +PT GGS+TYND PYSKSLKSKIGFVTQDDVLFPHLTV+E
Sbjct: 181 MGPSGSGKTTLLNLLGGRLNQPTAGGSVTYNDQPYSKSLKSKIGFVTQDDVLFPHLTVRE 240
Query: 249 TLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGN 308
TLTYAA LRLP TLTKQQKEKRA+DVI ELGL+RCQDTMIGGSFVRGVSGGERKRV IGN
Sbjct: 241 TLTYAARLRLPKTLTKQQKEKRAVDVIYELGLDRCQDTMIGGSFVRGVSGGERKRVSIGN 300
Query: 309 EIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLIL 368
EIIINPSLLFLDEPTSGLDSTTALRIVQML DIAEAGKTV+TTIHQPSSRLFHKFDKLIL
Sbjct: 301 EIIINPSLLFLDEPTSGLDSTTALRIVQMLHDIAEAGKTVLTTIHQPSSRLFHKFDKLIL 360
Query: 369 LGKGSLLYFGKASEAMAYFSSIGCSPQIAMNPAEFLLDLANGNLHDVSVPSELQDRVQTE 428
LGKG+LLYFGKAS M YFSSIGCSP I MNPAEFLLDLANGNL+DVS+PSEL+D+VQTE
Sbjct: 361 LGKGNLLYFGKASGTMEYFSSIGCSPLITMNPAEFLLDLANGNLNDVSIPSELEDKVQTE 420
Query: 429 NSENDTANGKPTPAIVHEYLVEAYETRVAENEKKKLMAPIPLDEEIKAKVSSPKRNWGAS 488
+SE +T NGKP+PA VHEYLVEAYETRVA+ EKKKLM PIP+DEE+K+KV SPKR WGAS
Sbjct: 421 HSETETRNGKPSPADVHEYLVEAYETRVADQEKKKLMIPIPIDEELKSKVCSPKREWGAS 480
Query: 489 WIQQYTILFRRGIKEHRHDYFSWLRITQVLATAVILGLLWWQSDSKSPKGLEDQAGLLFF 548
W +QY+ILFRRG+KE RHDYFSWLR+TQV +TA ILGLLWWQS+S +PKGL+DQAGLLFF
Sbjct: 481 WWEQYSILFRRGLKERRHDYFSWLRVTQVASTATILGLLWWQSESTNPKGLQDQAGLLFF 540
Query: 549 IAVFWSFFPIFTAIFTFPQERAMLSKERAADMYRLSAYFLARTTSDLPLNLVLPVLFLVI 608
IAVFW FFP+FTAIFTFPQERAMLSKERAADMYRLSAYF+ARTTSDLPL+L+LPVLFL+I
Sbjct: 541 IAVFWGFFPVFTAIFTFPQERAMLSKERAADMYRLSAYFVARTTSDLPLDLILPVLFLII 600
Query: 609 VYFMAGLRMGAGPFFLSMLTVFLSIVAAQGLGLAIGAILMDLKKATTLASVTIMTFMLAG 668
VYFMAGLRM AG FFL+MLTVFL IVAAQGLGLAIGA LMDLK+ATTLASVT+MTFMLAG
Sbjct: 601 VYFMAGLRMDAGSFFLTMLTVFLCIVAAQGLGLAIGATLMDLKRATTLASVTVMTFMLAG 660
Query: 669 GYFVQEVPVFISWIRYMSFNFHTYKILLKIQYADISPIVNGMRTDSGFREVCALVAMVFG 728
GYFV++VP+FISWIRY+SFN+HTYK+LLK+QY I+P VNGM+ D G +EV ALVAMVFG
Sbjct: 661 GYFVKKVPIFISWIRYISFNYHTYKLLLKVQYEHITPNVNGMKIDGGLKEVSALVAMVFG 720
Query: 729 YRLLAYLSLRKMKLHFGA 746
YRLLAY+SLR+MKLH GA
Sbjct: 721 YRLLAYISLRRMKLHTGA 738
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224091479|ref|XP_002309268.1| white-brown-complex ABC transporter family [Populus trichocarpa] gi|222855244|gb|EEE92791.1| white-brown-complex ABC transporter family [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1199 bits (3101), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 613/743 (82%), Positives = 680/743 (91%), Gaps = 4/743 (0%)
Query: 1 MEKPVSSTSLARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGR 60
ME+ ++TSLARTKS+QL ET+ AAFKSP++++ GGTLS KSS+R+ TAASPGR
Sbjct: 1 MER--ANTSLARTKSEQLAETVEAAFKSPMNNDGVSEGGSGGTLSGKSSKRLTTAASPGR 58
Query: 61 AGASG-RNTHIRKSRSAQLKLELDEVSSGAALSRASSASLGLSFSFTGFTMPPDEIADSK 119
+ G +NTHIRKSRSAQ+K ELD+V+SGAALSRASSASLG SFSFTGF MPPDEIADS
Sbjct: 59 TTSGGNKNTHIRKSRSAQMKFELDDVNSGAALSRASSASLGFSFSFTGFNMPPDEIADSM 118
Query: 120 PFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFTDVTYKVILKGMTSSEEKDILNGITGS 179
PFSDDDIPED+EAG R++ KFQTEP+LPIYLKF DVTYKVI+KGMTS+EEKDILNGI+GS
Sbjct: 119 PFSDDDIPEDLEAGMRKQ-KFQTEPSLPIYLKFRDVTYKVIIKGMTSTEEKDILNGISGS 177
Query: 180 VNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDV 239
V+PGEVLALMGPSGSGKTTLLNLL GRL +PTVGGSITYND PYSK LKS+IGFVTQDD+
Sbjct: 178 VDPGEVLALMGPSGSGKTTLLNLLGGRLNQPTVGGSITYNDGPYSKFLKSRIGFVTQDDI 237
Query: 240 LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299
LFPHLTVKETLTYAALLRLP TLTKQQK+KRA+DVI ELGLERCQDT+IGGSFVRGVSGG
Sbjct: 238 LFPHLTVKETLTYAALLRLPKTLTKQQKQKRAMDVIYELGLERCQDTVIGGSFVRGVSGG 297
Query: 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRL 359
ERKRVCIGNEIIINPS+LFLDEPTSGLDSTTAL+ VQ+LQD+AE GKTVVTTIHQPSSRL
Sbjct: 298 ERKRVCIGNEIIINPSILFLDEPTSGLDSTTALKTVQLLQDMAEGGKTVVTTIHQPSSRL 357
Query: 360 FHKFDKLILLGKGSLLYFGKASEAMAYFSSIGCSPQIAMNPAEFLLDLANGNLHDVSVPS 419
FHKFDKLILLGKGSLLYFGK+SEAM YFSSIGC+P IAMNPAEFLLDLANGN++DVSVPS
Sbjct: 358 FHKFDKLILLGKGSLLYFGKSSEAMLYFSSIGCNPLIAMNPAEFLLDLANGNINDVSVPS 417
Query: 420 ELQDRVQTENSENDTANGKPTPAIVHEYLVEAYETRVAENEKKKLMAPIPLDEEIKAKVS 479
EL D+VQ NS+ NGKP+PA+VHEYLVEAYETRVA EKKKLM PIPLDEE+KAKVS
Sbjct: 418 ELDDKVQIVNSDAGKRNGKPSPAVVHEYLVEAYETRVAVKEKKKLMVPIPLDEEVKAKVS 477
Query: 480 SPKRNWGASWIQQYTILFRRGIKEHRHDYFSWLRITQVLATAVILGLLWWQSDSKSPKGL 539
S KR WGASW QQYTILF RGIKE RHDYFSWLRITQVL+TA+ILGLLWW SD+ S KGL
Sbjct: 478 SLKRQWGASWWQQYTILFCRGIKERRHDYFSWLRITQVLSTAIILGLLWWNSDTNSLKGL 537
Query: 540 EDQAGLLFFIAVFWSFFPIFTAIFTFPQERAMLSKERAADMYRLSAYFLARTTSDLPLNL 599
+DQAGLLFFIAVFW FFP+FTAIFTFPQERAMLSKERAADMYRLSAYFLARTTSDLPL+L
Sbjct: 538 QDQAGLLFFIAVFWGFFPVFTAIFTFPQERAMLSKERAADMYRLSAYFLARTTSDLPLDL 597
Query: 600 VLPVLFLVIVYFMAGLRMGAGPFFLSMLTVFLSIVAAQGLGLAIGAILMDLKKATTLASV 659
VLPVLFL++VYFMAGLRM A PFFL+MLTVFLSI+AAQGLGLAIGA LMDLK+ATTLASV
Sbjct: 598 VLPVLFLLVVYFMAGLRMSAAPFFLTMLTVFLSIIAAQGLGLAIGATLMDLKRATTLASV 657
Query: 660 TIMTFMLAGGYFVQEVPVFISWIRYMSFNFHTYKILLKIQYADISPIVNGMRTDSGFREV 719
T+MTFMLAGGYFV+ VPVF+SWIRY+SFN+HTYK+LLK+QY ++P++NGMR DSG EV
Sbjct: 658 TVMTFMLAGGYFVKRVPVFVSWIRYLSFNYHTYKLLLKVQYKHMTPVLNGMRIDSGLTEV 717
Query: 720 CALVAMVFGYRLLAYLSLRKMKL 742
ALVAMVFGYRLLAY+SLR+MKL
Sbjct: 718 SALVAMVFGYRLLAYISLRRMKL 740
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297810759|ref|XP_002873263.1| abc transporter family protein [Arabidopsis lyrata subsp. lyrata] gi|297319100|gb|EFH49522.1| abc transporter family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1172 bits (3032), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 578/751 (76%), Positives = 662/751 (88%), Gaps = 12/751 (1%)
Query: 1 MEKPVSSTSLARTKSDQLVETLSAAFKSP--------VSSETAGASDGGGTLSRKSSRRM 52
MEKP ++ LART+S+QL ET++AA +SP V + A GGGTLSRKSSRR+
Sbjct: 1 MEKPPLASGLARTRSEQLYETVAAAIRSPHGSMDANGVPATAPAAVGGGGTLSRKSSRRL 60
Query: 53 LTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSGAALSRASSASLGLSFSFTGFTMPP 112
+ ASPGR+G +G THIRKSRSAQLKLEL+EVSSGAALSRASSASLGLSFSFTGF MPP
Sbjct: 61 MMGASPGRSGGAG--THIRKSRSAQLKLELEEVSSGAALSRASSASLGLSFSFTGFAMPP 118
Query: 113 DEIADSKPFSDDD-IPEDIEAGTRERPKFQTEPTLPIYLKFTDVTYKVILKGMTSSEEKD 171
+EI+DSKPFSD++ IPEDIEAG +++PKFQ EPTLPI+LKF DVTYKV++K +TSS EK+
Sbjct: 119 EEISDSKPFSDEEMIPEDIEAG-KKKPKFQAEPTLPIFLKFRDVTYKVVIKKLTSSAEKE 177
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKI 231
IL GI+GSV+PGEVLALMGPSGSGKTTLL+LL+GR+ + + GGSITYND PYSK LKSKI
Sbjct: 178 ILTGISGSVSPGEVLALMGPSGSGKTTLLSLLAGRISQSSTGGSITYNDKPYSKYLKSKI 237
Query: 232 GFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGS 291
GFVTQDDVLFPHLTVKETLTYAA LRLP TLT++QK++RA+DVI ELGLERCQDTMIGG+
Sbjct: 238 GFVTQDDVLFPHLTVKETLTYAARLRLPKTLTREQKKQRALDVIQELGLERCQDTMIGGA 297
Query: 292 FVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTT 351
FVRGVSGGERKRV IGNEIIINPSLL LDEPTSGLDSTTALR + ML DIAEAGKTV+TT
Sbjct: 298 FVRGVSGGERKRVSIGNEIIINPSLLLLDEPTSGLDSTTALRTILMLHDIAEAGKTVITT 357
Query: 352 IHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGCSPQIAMNPAEFLLDLANGN 411
IHQPSSRLFH+FDKLILLG+GSLLYFGK+SEA+ YFSSIGCSP IAMNPAEFLLDLANGN
Sbjct: 358 IHQPSSRLFHRFDKLILLGRGSLLYFGKSSEALDYFSSIGCSPLIAMNPAEFLLDLANGN 417
Query: 412 LHDVSVPSELQDRVQTENSENDTANGKPTPAIVHEYLVEAYETRVAENEKKKLMAPIPLD 471
++D+SVPSEL DRVQ NS +T GKP+P IVHEYLVEAYETRVAE EKKKL+ P+PLD
Sbjct: 418 INDISVPSELDDRVQVGNSGRETQTGKPSPTIVHEYLVEAYETRVAEQEKKKLLDPVPLD 477
Query: 472 EEIKAKVSSPKRNWGASWIQQYTILFRRGIKEHRHDYFSWLRITQVLATAVILGLLWWQS 531
EE KAK + KR WGA W +QY ILF RG+KE RH+YFSWLR+TQVL+TAVILGLLWWQS
Sbjct: 478 EEAKAKSTRLKRQWGAGWWEQYCILFCRGLKERRHEYFSWLRVTQVLSTAVILGLLWWQS 537
Query: 532 DSKSPKGLEDQAGLLFFIAVFWSFFPIFTAIFTFPQERAMLSKERAADMYRLSAYFLART 591
D ++P GL+DQAGLLFFIAVFW FFP+FTAIF FPQERAML+KERAADMYRLSAYFLART
Sbjct: 538 DIRTPVGLQDQAGLLFFIAVFWGFFPVFTAIFAFPQERAMLNKERAADMYRLSAYFLART 597
Query: 592 TSDLPLNLVLPVLFLVIVYFMAGLRMGAGPFFLSMLTVFLSIVAAQGLGLAIGAILMDLK 651
TSDLPL+ +LP LFL++VYFM GLR+ PFFLS+L VFL I+AAQGLGLAIGA+LMDLK
Sbjct: 598 TSDLPLDFILPSLFLLVVYFMTGLRISPYPFFLSILIVFLCIIAAQGLGLAIGAVLMDLK 657
Query: 652 KATTLASVTIMTFMLAGGYFVQEVPVFISWIRYMSFNFHTYKILLKIQYADISPIVNGMR 711
KATTLASVT+MTFMLAGG+FV++VPVFISWIRY+SFN+HTYK+LLK+QY D + +NGMR
Sbjct: 658 KATTLASVTVMTFMLAGGFFVKKVPVFISWIRYLSFNYHTYKLLLKVQYQDFAESINGMR 717
Query: 712 TDSGFREVCALVAMVFGYRLLAYLSLRKMKL 742
D+G EV ALV M+FGYRLLAYLSLR+MK+
Sbjct: 718 IDNGLTEVAALVVMIFGYRLLAYLSLRQMKI 748
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449437512|ref|XP_004136536.1| PREDICTED: ABC transporter G family member 22-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1171 bits (3030), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 596/751 (79%), Positives = 677/751 (90%), Gaps = 7/751 (0%)
Query: 1 MEKPVSSTSLARTKSDQLVETLSAAFKSPVSSETAGA---SDGGGTLSRKSSRRMLTAAS 57
MEK SS LARTKSDQL+E ++AAFKSP+SS A G TLSRKSS++ LTA S
Sbjct: 1 MEK-TSSLGLARTKSDQLLEKVAAAFKSPMSSTEANGVVGESGSTTLSRKSSKQTLTAPS 59
Query: 58 PGRAGASGR--NTHIRKSRSAQLKLELDEVSSGAALSRASSASLGLSFSFTGFTMPPDEI 115
PGR SG NTHIRKSRSAQLKL+LD++ SGAALSRASSASLGLSFSFTGFT+PPDEI
Sbjct: 60 PGRGSGSGGGRNTHIRKSRSAQLKLDLDDLGSGAALSRASSASLGLSFSFTGFTLPPDEI 119
Query: 116 ADSKPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFTDVTYKVILKGMTSSEEKDILNG 175
D KPFSD+DIPED+EAGT + +FQTEPT+PI+LKF DVTYKVI+KG+ ++ EK+ILNG
Sbjct: 120 GDFKPFSDEDIPEDVEAGTC-KTRFQTEPTMPIHLKFKDVTYKVIIKGLRTNVEKEILNG 178
Query: 176 ITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVT 235
ITG VNPGEVLALMGPSGSGKTTLLNLL GR++ T GGS+TYND PY+K LKS+IGFV
Sbjct: 179 ITGLVNPGEVLALMGPSGSGKTTLLNLLGGRIIRSTAGGSVTYNDQPYNKFLKSRIGFVM 238
Query: 236 QDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRG 295
Q+DVLFPHLTVKETL YAALLRLPNTLTK+QKEKRAIDVI ELGLERCQDTMIGGSFVRG
Sbjct: 239 QEDVLFPHLTVKETLRYAALLRLPNTLTKEQKEKRAIDVIYELGLERCQDTMIGGSFVRG 298
Query: 296 VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQP 355
VSGGER+RV IGNEIIINPSLLFLDEPTSGLDSTTALRIVQ+L +IAEAGKTVVTTIHQP
Sbjct: 299 VSGGERRRVSIGNEIIINPSLLFLDEPTSGLDSTTALRIVQILHEIAEAGKTVVTTIHQP 358
Query: 356 SSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGCSPQIAMNPAEFLLDLANGNLHDV 415
SSRLFHKFDKLILLGKGSL+Y+GKA+EAM YF+SIGCSP IAMNPAEFLLDLANGNL DV
Sbjct: 359 SSRLFHKFDKLILLGKGSLIYYGKAAEAMNYFASIGCSPLIAMNPAEFLLDLANGNLSDV 418
Query: 416 SVPSELQDRVQTENSENDTANGKPTPAIVHEYLVEAYETRVAENEKKKLMAPIPLDEEIK 475
SVPSEL+D+VQ ENSE D+ +P+P +V EYLVEAYETRVAE EK+K++ P+ LDEE+K
Sbjct: 419 SVPSELEDKVQMENSEADSRQDRPSPILVQEYLVEAYETRVAEKEKRKMLTPLTLDEELK 478
Query: 476 AKVSSPKRNWGASWIQQYTILFRRGIKEHRHDYFSWLRITQVLATAVILGLLWWQSDSKS 535
+KVS+ +R WGASW +QY+ILFRRGIKE RH+YFSWLRITQVLATAVILGLLWWQS+SKS
Sbjct: 479 SKVSNSRRQWGASWWEQYSILFRRGIKERRHEYFSWLRITQVLATAVILGLLWWQSESKS 538
Query: 536 PKGLEDQAGLLFFIAVFWSFFPIFTAIFTFPQERAMLSKERAADMYRLSAYFLARTTSDL 595
PKGL+DQAGLLFFIAVFW FFP+FTAIFTFPQERAMLSKERAADMYRLSAYFLARTTSDL
Sbjct: 539 PKGLQDQAGLLFFIAVFWGFFPVFTAIFTFPQERAMLSKERAADMYRLSAYFLARTTSDL 598
Query: 596 PLNLVLPVLFLVIVYFMAGLRMGAGPFFLSMLTVFLSIVAAQGLGLAIGAILMDLKKATT 655
PL+L+LP+LFL++VYFMAGLR+ A PFFL+M+TVFLSIVAAQGLGLAIGA LMD+KKATT
Sbjct: 599 PLDLLLPILFLLVVYFMAGLRLSAAPFFLTMVTVFLSIVAAQGLGLAIGATLMDVKKATT 658
Query: 656 LASVTIMTFMLAGGYFVQEVPVFISWIRYMSFNFHTYKILLKIQYADISPIVNGMRTDSG 715
LASVT+MTFMLAGG+FVQ+VPVF++WIRY+SFN+HTYK+LLK+QY +I P VNGM+ D+G
Sbjct: 659 LASVTVMTFMLAGGFFVQKVPVFVAWIRYVSFNYHTYKLLLKVQYNNIIPAVNGMKMDNG 718
Query: 716 FREVCALVAMVFGYRLLAYLSLRKMKLHFGA 746
EV AL+AMVFGYRLLAY+SLR+M+LH G+
Sbjct: 719 VVEVTALIAMVFGYRLLAYISLRRMRLHSGS 749
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 746 | ||||||
| TAIR|locus:2144133 | 751 | ABCG22 "ATP-binding cassette G | 0.989 | 0.982 | 0.691 | 5.2e-271 | |
| TAIR|locus:2090009 | 685 | ABCG26 "ATP-binding cassette G | 0.749 | 0.816 | 0.457 | 1.2e-138 | |
| TAIR|locus:2016089 | 662 | ABCG25 "ATP-binding casette G2 | 0.328 | 0.370 | 0.585 | 6.1e-130 | |
| TAIR|locus:2028656 | 648 | ABCG14 "ATP-binding cassette G | 0.491 | 0.566 | 0.498 | 1e-91 | |
| DICTYBASE|DDB_G0269214 | 793 | abcG1 "ABC transporter G famil | 0.379 | 0.356 | 0.408 | 3e-75 | |
| RGD|631345 | 657 | Abcg2 "ATP-binding cassette, s | 0.703 | 0.799 | 0.313 | 1.1e-72 | |
| FB|FBgn0020445 | 1017 | E23 "Early gene at 23" [Drosop | 0.316 | 0.232 | 0.451 | 1.2e-72 | |
| UNIPROTKB|B2D1N9 | 658 | ABCG2 "ATP-binding cassette su | 0.714 | 0.810 | 0.329 | 5.3e-72 | |
| UNIPROTKB|Q4GZT4 | 655 | ABCG2 "ATP-binding cassette su | 0.714 | 0.813 | 0.329 | 5.3e-72 | |
| MGI|MGI:1347061 | 657 | Abcg2 "ATP-binding cassette, s | 0.703 | 0.799 | 0.330 | 1.4e-71 |
| TAIR|locus:2144133 ABCG22 "ATP-binding cassette G22" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2606 (922.4 bits), Expect = 5.2e-271, P = 5.2e-271
Identities = 519/751 (69%), Positives = 592/751 (78%)
Query: 1 MEKPVSSTSLARTKSDQLVETLSAAFKSPVSS-------ETAGAS-DGGGTLSRKSSRRM 52
MEKP ++ LART+S+QL ET++A +SP S TA A+ GGGTLSRKSSRR+
Sbjct: 3 MEKPPLASGLARTRSEQLYETVAADIRSPHGSMDANGVPATAPAAVGGGGTLSRKSSRRL 62
Query: 53 LTXXXXXXXXXXXXNTHIRKSRSAQLKLELDEVXXXXXXXXXXXXXXXXXXXXXXXTMPP 112
+ THIRKSRSAQLKLEL+EV MPP
Sbjct: 63 M---GMSPGRSSGAGTHIRKSRSAQLKLELEEVSSGAALSRASSASLGLSFSFTGFAMPP 119
Query: 113 DEIADSKPFSDDD-IPEDIEAGTRERPKFQTEPTLPIYLKFTDVTYKVILKGMTSSEEKD 171
+EI+DSKPFSDD+ IPEDIEAG +++PKFQ EPTLPI+LKF DVTYKV++K +TSS EK+
Sbjct: 120 EEISDSKPFSDDEMIPEDIEAG-KKKPKFQAEPTLPIFLKFRDVTYKVVIKKLTSSVEKE 178
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKI 231
IL GI+GSVNPGEVLALMGPSGSGKTTLL+LL+GR+ + + GGS+TYND PYSK LKSKI
Sbjct: 179 ILTGISGSVNPGEVLALMGPSGSGKTTLLSLLAGRISQSSTGGSVTYNDKPYSKYLKSKI 238
Query: 232 GFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGS 291
GFVTQDDVLFPHLTVKETLTYAA LRLP TLT++QK++RA+DVI ELGLERCQDTMIGG+
Sbjct: 239 GFVTQDDVLFPHLTVKETLTYAARLRLPKTLTREQKKQRALDVIQELGLERCQDTMIGGA 298
Query: 292 FVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTT 351
FVRGVSGGERKRV IGNEIIINPSLL LDEPTSGLDSTTALR + ML DIAEAGKTV+TT
Sbjct: 299 FVRGVSGGERKRVSIGNEIIINPSLLLLDEPTSGLDSTTALRTILMLHDIAEAGKTVITT 358
Query: 352 IHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGCSPQIAMNPAEFLLDLANGN 411
IHQPSSRLFH+FDKLILLG+GSLLYFGK+SEA+ YFSSIGCSP IAMNPAEFLLDLANGN
Sbjct: 359 IHQPSSRLFHRFDKLILLGRGSLLYFGKSSEALDYFSSIGCSPLIAMNPAEFLLDLANGN 418
Query: 412 LHDVSVPSELQDRVQTENSENDTANGKPTPAIVHEYLVEAYETRVAENEKKKLMAPIPLD 471
++D+SVPSEL DRVQ NS +T GKP+PA VHEYLVEAYETRVAE EKKKL+ P+PLD
Sbjct: 419 INDISVPSELDDRVQVGNSGRETQTGKPSPAAVHEYLVEAYETRVAEQEKKKLLDPVPLD 478
Query: 472 EEIKAKVSSPKRNWGASWIQQYTILFRRGIKEHRHDYFSWLRITQVLATAVILGLLWWQS 531
EE KAK + KR WG W +QY ILF RG+KE RH+YFSWLR+TQVL+TAVILGLLWWQS
Sbjct: 479 EEAKAKSTRLKRQWGTCWWEQYCILFCRGLKERRHEYFSWLRVTQVLSTAVILGLLWWQS 538
Query: 532 DSKSPKGLEDQAGLLFFIAVFWSXXXXXXXXXXXXQERAMLSKERAADMYRLSAYFLART 591
D ++P GL+DQAGLLFFIAVFW QERAML+KERAADMYRLSAYFLART
Sbjct: 539 DIRTPMGLQDQAGLLFFIAVFWGFFPVFTAIFAFPQERAMLNKERAADMYRLSAYFLART 598
Query: 592 TSDXXXXXXXXXXXXXXXYFMAGLRMGAGPFFLSMLTVFLSXXXXXXXXXXXXXXXMDLK 651
TSD YFM GLR+ PFFLSMLTVFL MDLK
Sbjct: 599 TSDLPLDFILPSLFLLVVYFMTGLRISPYPFFLSMLTVFLCIIAAQGLGLAIGAILMDLK 658
Query: 652 KATTLASVTIMTFMLAGGYFVQEVPVFISWIRYMSFNFHTYKILLKIQYADISPIVNGMR 711
KATTLASVT+MTFMLAGG+FV++VPVFISWIRY+SFN+HTYK+LLK+QY D + +NGMR
Sbjct: 659 KATTLASVTVMTFMLAGGFFVKKVPVFISWIRYLSFNYHTYKLLLKVQYQDFAVSINGMR 718
Query: 712 TDSGFREVCALVAMVFGYRLLAYLSLRKMKL 742
D+G EV ALV M+FGYRLLAYLSLR+MK+
Sbjct: 719 IDNGLTEVAALVVMIFGYRLLAYLSLRQMKI 749
|
|
| TAIR|locus:2090009 ABCG26 "ATP-binding cassette G26" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1306 (464.8 bits), Expect = 1.2e-138, Sum P(2) = 1.2e-138
Identities = 268/586 (45%), Positives = 370/586 (63%)
Query: 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKS 229
K IL GITGS PGE+LALMGPSGSGKTTLL ++ GRL + V G +TYND PYS S+K
Sbjct: 104 KHILKGITGSTGPGEILALMGPSGSGKTTLLKIMGGRLTD-NVKGKLTYNDIPYSPSVKR 162
Query: 230 KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIG 289
+IGFVTQDDVL P LTV+ETL +AA LRLP++++K+QK + +I ELGLERC+ T +G
Sbjct: 163 RIGFVTQDDVLLPQLTVEETLAFAAFLRLPSSMSKEQKYAKIEMIIKELGLERCRRTRVG 222
Query: 290 GSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVV 349
G FV+G+SGGERKR I EI+++PSLL LDEPTSGLDST+A +++ +LQ +A+AG+TV+
Sbjct: 223 GGFVKGISGGERKRASIAYEILVDPSLLLLDEPTSGLDSTSATKLLHILQGVAKAGRTVI 282
Query: 350 TTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGCSPQIAMNPAEFLLDLAN 409
TTIHQPSSR+FH FDKL+L+ +G ++GKA E+M YFSS+ P+IAMNPAEFLLDLA
Sbjct: 283 TTIHQPSSRMFHMFDKLLLISEGHPAFYGKARESMEYFSSLRILPEIAMNPAEFLLDLAT 342
Query: 410 GNLHDVSVPSELQDRVQTENSENDTANGKPTPAIVHEYLVEAYETRVAENEKKKLMAPIP 469
G + D+S+P EL + + ++ D+ ++ +YL + Y+T + EK++
Sbjct: 343 GQVSDISLPDEL---LAAKTAQPDSEE------VLLKYLKQRYKTDLEPKEKEENHRNRK 393
Query: 470 LDEEIKAKVSSPKRNWGASWIQQYTILFRRGIKEHRHDYFSWLRITQVLATAVILGLLWW 529
E ++ + K++W SW Q+ IL RR +E R DYF LR+ Q L AV+LGLLWW
Sbjct: 394 APEHLQIAIQV-KKDWTLSWWDQFLILSRRTFRERRRDYFDKLRLVQSLGVAVVLGLLWW 452
Query: 530 QSDSKSPKGLEDQAGLLFFIAVFWSXXXXXXXXXXXXQERAMLSKERAADMYRLSAYFLA 589
+S + + L DQ GL+F+I +FW+ E+ L KER A+MYRLS Y++
Sbjct: 453 KSKTDTEAHLRDQVGLMFYICIFWTSSSLFGAVYVFPFEKIYLVKERKAEMYRLSVYYVC 512
Query: 590 RTTSDXXXXXXXXXXXXXXXYFMAGLRMGAGPFFLSMLTVFLSXXXXXXXXXXXXXXXMD 649
T D YFMA F ++LT+ L +
Sbjct: 513 STLCDMVAHVLYPTFFMIIVYFMAEFNRNIPCFLFTVLTILLIAITSQGAGEFLGASVLS 572
Query: 650 LKKATTLASVTIMTFMLAGGYFVQEVPVFISWIRYMSFNFHTYKILLKIQY-ADI---SP 705
+K+A +AS+ +M F+L GGY+VQ +P F+ W++Y+SF + +++LLK+QY AD
Sbjct: 573 IKRAGMIASLVLMLFLLTGGYYVQHIPKFMQWLKYLSFMHYGFRLLLKVQYSADQLFECG 632
Query: 706 IVNGMRT------------DSGFREVCALVAMVFGYRLLAYLSLRK 739
G RT + G +E+ L+AM FGYRL AY LRK
Sbjct: 633 SKGGCRTLQSSSSFDTINLNGGLQELWVLLAMAFGYRLCAYFCLRK 678
|
|
| TAIR|locus:2016089 ABCG25 "ATP-binding casette G25" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 757 (271.5 bits), Expect = 6.1e-130, Sum P(4) = 6.1e-130
Identities = 144/246 (58%), Positives = 190/246 (77%)
Query: 166 SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK 225
S+EE+ IL+G+TG ++PGE +A++GPSGSGK+TLLN ++GRL + G I ND +K
Sbjct: 77 STEERTILSGVTGMISPGEFMAVLGPSGSGKSTLLNAVAGRLHGSNLTGKILINDGKITK 136
Query: 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQD 285
+ GFV QDD+L+PHLTV+ETL + ALLRLP +LT+ K + A VI+ELGL +C++
Sbjct: 137 QTLKRTGFVAQDDLLYPHLTVRETLVFVALLRLPRSLTRDVKLRAAESVISELGLTKCEN 196
Query: 286 TMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA- 344
T++G +F+RG+SGGERKRV I +E++INPSLL LDEPTSGLD+T ALR+VQ L +A
Sbjct: 197 TVVGNTFIRGISGGERKRVSIAHELLINPSLLVLDEPTSGLDATAALRLVQTLAGLAHGK 256
Query: 345 GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGCSPQIAMNPAEFL 404
GKTVVT+IHQPSSR+F FD ++LL +G L+ GK +AMAYF S+G SP MNPA+FL
Sbjct: 257 GKTVVTSIHQPSSRVFQMFDTVLLLSEGKCLFVGKGRDAMAYFESVGFSPAFPMNPADFL 316
Query: 405 LDLANG 410
LDLANG
Sbjct: 317 LDLANG 322
|
|
| TAIR|locus:2028656 ABCG14 "ATP-binding cassette G14" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 914 (326.8 bits), Expect = 1.0e-91, P = 1.0e-91
Identities = 196/393 (49%), Positives = 257/393 (65%)
Query: 147 PIYLKFTDVTYKVILK------GMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLL 200
PI LKF +V YKV ++ G S+EK ILNGITG V PGE LA++GPSGSGKTTLL
Sbjct: 50 PITLKFEEVVYKVKIEQTSQCMGSWKSKEKTILNGITGMVCPGEFLAMLGPSGSGKTTLL 109
Query: 201 NLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPN 260
+ L GRL + T G + YN P+S +K + GFV QDDVL+PHLTV ETL + ALLRLP+
Sbjct: 110 SALGGRLSK-TFSGKVMYNGQPFSGCIKRRTGFVAQDDVLYPHLTVWETLFFTALLRLPS 168
Query: 261 TLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLD 320
+LT+ +K + VI ELGL RC ++MIGG RG+SGGE+KRV IG E++INPSLL LD
Sbjct: 169 SLTRDEKAEHVDRVIAELGLNRCTNSMIGGPLFRGISGGEKKRVSIGQEMLINPSLLLLD 228
Query: 321 EPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380
EPTSGLDSTTA RIV ++ +A G+TVVTTIHQPSSR++H FDK++LL +GS +Y+G A
Sbjct: 229 EPTSGLDSTTAHRIVTTIKRLASGGRTVVTTIHQPSSRIYHMFDKVVLLSEGSPIYYGAA 288
Query: 381 SEAMAYFSSIGCSPQIAMNPAEFLLDLANGNLHDVSVPSELQDRVQTENSENDTANGKPT 440
S A+ YFSS+G S + +NPA+ LLDLANG +P + Q E SE + K T
Sbjct: 289 SSAVEYFSSLGFSTSLTVNPADLLLDLANG------IPPD----TQKETSEQEQKTVKET 338
Query: 441 PAIVHEYLVEA-YETRVAENEKKKLMAPIPLDEEIKAKVSSPK-RNWGASWIQQYTILFR 498
+E + + + E E KA + K W +W Q+T+L +
Sbjct: 339 LVSAYEKNISTKLKAELCNAESHSY-------EYTKAAAKNLKSEQWCTTWWYQFTVLLQ 391
Query: 499 RGIKEHRHDYFSWLRITQVLATAVILGLLWWQS 531
RG++E R + F+ LRI QV++ A + GLLWW +
Sbjct: 392 RGVRERRFESFNKLRIFQVISVAFLGGLLWWHT 424
|
|
| DICTYBASE|DDB_G0269214 abcG1 "ABC transporter G family protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 580 (209.2 bits), Expect = 3.0e-75, Sum P(3) = 3.0e-75
Identities = 123/301 (40%), Positives = 194/301 (64%)
Query: 123 DDDIPEDIEAGTRERPKFQTEPTLPIYLKFTDVTYKVIL--KGMTSSEEKDILNGITGSV 180
+++I ++ ++R F+ I F D+ + V + KG K IL I G +
Sbjct: 91 NNNIINNLNKKNKKRSTFKNR----IDFSFKDINHYVQITEKGKKKKISKQILTNINGHI 146
Query: 181 NPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSIT-Y-NDHPYSKSLKSKI-GFVTQD 237
G + A+MGPSG+GKTTLL++L+ RL + GS T Y N + ++ K+ G+VTQ
Sbjct: 147 ESGTIFAIMGPSGAGKTTLLDILAHRL---NINGSGTMYLNGNKSDFNIFKKLCGYVTQS 203
Query: 238 DVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIG--GSFVRG 295
D L P LTV+ETL + A L++P + ++K +R D+I+E+GL RC DT++G + +RG
Sbjct: 204 DSLMPSLTVRETLNFYAQLKMPRDVPLKEKLQRVQDIIDEMGLNRCADTLVGTADNKIRG 263
Query: 296 VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQP 355
+SGGER+RV I E++ PS++ LDEPTSGLD++T+ ++ L+ +A++G+T++ TIHQP
Sbjct: 264 ISGGERRRVTISIELLTGPSVILLDEPTSGLDASTSFYVMSALKKLAKSGRTIICTIHQP 323
Query: 356 SSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIG--CSPQIAMNPAEFLLDLANGNLH 413
S ++ FD L+LLG G+ +Y+GKA++A+ YF++ G CS + NPA+F LDL N +
Sbjct: 324 RSNIYDMFDNLLLLGDGNTIYYGKANKALEYFNANGYHCSEKT--NPADFFLDLINTQVE 381
Query: 414 D 414
D
Sbjct: 382 D 382
|
|
| RGD|631345 Abcg2 "ATP-binding cassette, subfamily G (WHITE), member 2" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 716 (257.1 bits), Expect = 1.1e-72, Sum P(2) = 1.1e-72
Identities = 172/548 (31%), Positives = 284/548 (51%)
Query: 150 LKFTDVTYKVILKG---MTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGR 206
L F +TY+V +K + + EK+IL+ I G + PG + A++GP+G GK++LL++L+ R
Sbjct: 37 LSFHHITYRVKVKSGFLVRKTAEKEILSDINGIMKPG-LNAILGPTGGGKSSLLDVLAAR 95
Query: 207 LMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQ 266
+ G + N P + K G+V QDDV+ LTV+E L ++A LRLP + +
Sbjct: 96 KDPRGLSGDVLINGAPQPANFKCSSGYVVQDDVVMGTLTVRENLQFSAALRLPKAMKTHE 155
Query: 267 KEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGL 326
K +R +I ELGL++ D+ +G F RG+SGGERKR IG E+I +PS+LFLDEPT+GL
Sbjct: 156 KNERINTIIKELGLDKVADSKVGTQFTRGISGGERKRTSIGMELITDPSILFLDEPTTGL 215
Query: 327 DSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAY 386
DS+TA ++ +L+ +++ G+T++ +IHQP +F FD L LL G L++ G A +A+ Y
Sbjct: 216 DSSTANAVLLLLKRMSKQGRTIIFSIHQPRYSIFKLFDSLTLLASGKLMFHGPAQKALEY 275
Query: 387 FSSIG--CSPQIAMNPAEFLLDLANGNLHDVSVPSELQDRVQTENSENDTANGKPTPAIV 444
F+S G C P NPA+F LD+ NG+ V + QD + +E + KP +
Sbjct: 276 FASAGYHCEPY--NNPADFFLDVINGDSSAVMLNRGEQDH-EANKTEEPSKREKP----I 328
Query: 445 HEYLVEAYETRVAENEKKKLMAPIPLDEEIKAKVSSPKRNWGASWIQQYTILFRRGIKEH 504
E L E Y E K + +P+ ++ K + + + S+ Q + RR K
Sbjct: 329 IENLAEFYINSTIYGETKAELDQLPVAQKKKGSSAFREPVYVTSFCHQLRWIARRSFKNL 388
Query: 505 RHDYFSWLRITQVLATAV---ILGLLWWQSDSKSPKGLEDQAGLLFFIAVFWSXXXXXXX 561
+ + Q++ T + I+G L++ + P G++++AG+ FF+
Sbjct: 389 LGN--PQASVAQLIVTVILGLIIGALYFGLKN-DPTGMQNRAGVFFFLTTNQCFTSVSAV 445
Query: 562 XXXXXQERAMLSKERAADMYRLSAYFLARTTSDXXXXXXXXXXXXX-XXYFMAGLRMGAG 620
+++ + E + YR+S+YF + SD YFM GL+
Sbjct: 446 ELFVVEKKLFIH-EYISGYYRVSSYFFGKLVSDLLPMRFLPSVIYTCILYFMLGLKRTVE 504
Query: 621 PFFLSMLTVFLSXXXXXXXXXXXXXXXMDLKKATTLASVTIMTFMLAGGYFV--QEVPVF 678
FF+ M T+ + + AT L +++ + ML G V + + +
Sbjct: 505 AFFIMMFTLIMVAYTASSMALAIAAGQSVVSVATLLMTISFVFMMLFSGLLVNLRTIGPW 564
Query: 679 ISWIRYMS 686
+SW++Y S
Sbjct: 565 LSWLQYFS 572
|
|
| FB|FBgn0020445 E23 "Early gene at 23" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 544 (196.6 bits), Expect = 1.2e-72, Sum P(2) = 1.2e-72
Identities = 108/239 (45%), Positives = 161/239 (67%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228
E+ IL+ ++G V+P EVLA+MGPSGSGKTTLL+ LSG+ GS+ N P +K +
Sbjct: 364 ERQILSDVSGFVSPCEVLAIMGPSGSGKTTLLDCLSGQ--RHIDSGSVFLNREPLTKKWR 421
Query: 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMI 288
+IG+V Q+++ FP LT++ET+ Y ALLRLP ++ + +K ++ ++ L L CQ T
Sbjct: 422 RRIGYVLQEEIFFPQLTLRETVVYTALLRLPESMPRAEKMRQVDHILEALELGCCQQTKF 481
Query: 289 GGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAG-KT 347
G RG+SGGE+KR I E++ NP L+ LDEPTSGLDS +A+ ++++L+ A+ KT
Sbjct: 482 GDYLNRGLSGGEKKRANIACELLTNPLLMLLDEPTSGLDSHSAISLMKVLKRYAQLEQKT 541
Query: 348 VVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGCSPQIAMNPAEFLLD 406
+V ++HQPSS++FH FDKL+LL +G YFG +F IG + + NPA+F+L+
Sbjct: 542 IVISVHQPSSQMFHMFDKLLLLHQGRTAYFGDVQNIYRHFEDIGVTIKPHYNPADFVLE 600
|
|
| UNIPROTKB|B2D1N9 ABCG2 "ATP-binding cassette sub-family G member 2" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 728 (261.3 bits), Expect = 5.3e-72, P = 5.3e-72
Identities = 184/559 (32%), Positives = 293/559 (52%)
Query: 150 LKFTDVTYKVILK-GMT---SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSG 205
L F ++ Y+V +K G + EK+IL I G + PG + A++GP+G GK++LL++L+
Sbjct: 39 LSFHNICYRVKVKTGFLLCRKTIEKEILANINGVMKPG-LNAILGPTGGGKSSLLDILAA 97
Query: 206 RLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQ 265
R + G + N P + K G+V QDDV+ LTV+E L ++A LRLP T+T
Sbjct: 98 RKDPHGLSGDVLINGAPRPANFKCNSGYVVQDDVVMGTLTVRENLQFSAALRLPTTMTSY 157
Query: 266 QKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSG 325
+K +R VI ELGL++ D+ +G F+RGVSGGERKR I E+I +PS+LFLDEPT+G
Sbjct: 158 EKNERINKVIQELGLDKVADSKVGTQFIRGVSGGERKRTSIAMELITDPSILFLDEPTTG 217
Query: 326 LDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385
LDS+TA ++ +L+ +++ G+T++ +IHQP +F FD L LL G L++ G A EA+
Sbjct: 218 LDSSTANAVLLLLKRMSKQGRTIIFSIHQPRYSIFKLFDSLTLLASGRLMFHGPAQEALG 277
Query: 386 YFSSIG--CSPQIAMNPAEFLLDLANGNLHDVSVPSELQDRVQTENSENDTANGKPTPAI 443
YF +IG C P NPA+F LD+ NG+ V + E D + E +E + + K TP I
Sbjct: 278 YFGAIGFRCEPY--NNPADFFLDIINGDSSAVVLNRE--D-IGDEANETEEPSKKDTPLI 332
Query: 444 VHEYLVEAYETRVAENEKKKLMAPIPLDEEIKAKVSSPKRNWGASWIQQYTILFRRGIKE 503
E L E Y E K + D+ K S + + S+ Q + RR K
Sbjct: 333 --EKLAEFYVNSSFFKETKVELDKFSGDQRRKKLPSYKEVTYATSFCHQLKWISRRSFKN 390
Query: 504 HRHDYFSWLRITQVLATA---VILGLLWWQSDSKS-PKGLEDQAGLLFFIAVFWSXXXXX 559
+ I Q++ T +++G +++ D K+ P G++++AG+LFF+
Sbjct: 391 LLGN--PQASIAQLIVTVFLGLVIGAIFY--DLKNDPAGIQNRAGVLFFLTTNQCFSSVS 446
Query: 560 XXXXXXXQERAMLSKERAADMYRLSAYFLARTTSDXXXXXXXXXXXXX-XXYFMAGLRMG 618
+++ + E + YR+S+YF + SD YF+ GL+
Sbjct: 447 AVELLVVEKKLFIH-EYISGYYRVSSYFFGKLLSDLLPMRMLPSIIFTCITYFLLGLKPK 505
Query: 619 AGPFFLSMLTVFLSXXXXXXXXXXXXXXXMDLKKATTLASVTIMTFMLAGGYFV--QEVP 676
FF+ MLT+ + + AT L +++ + M+ G V + V
Sbjct: 506 VEAFFIMMLTLMMVAYSASSMALAIAAGQSVVSIATLLMTISFVFMMIFSGLLVNLKTVV 565
Query: 677 VFISWIRYMSFNFHTYKIL 695
++SW++Y+S + Y L
Sbjct: 566 PWLSWLQYLSIPRYGYAAL 584
|
|
| UNIPROTKB|Q4GZT4 ABCG2 "ATP-binding cassette sub-family G member 2" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 728 (261.3 bits), Expect = 5.3e-72, P = 5.3e-72
Identities = 184/559 (32%), Positives = 293/559 (52%)
Query: 150 LKFTDVTYKVILK-GMT---SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSG 205
L F ++ Y+V +K G + EK+IL I G + PG + A++GP+G GK++LL++L+
Sbjct: 36 LSFHNICYRVKVKTGFLLCRKTIEKEILANINGVMKPG-LNAILGPTGGGKSSLLDILAA 94
Query: 206 RLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQ 265
R + G + N P + K G+V QDDV+ LTV+E L ++A LRLP T+T
Sbjct: 95 RKDPHGLSGDVLINGAPRPANFKCNSGYVVQDDVVMGTLTVRENLQFSAALRLPTTMTSY 154
Query: 266 QKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSG 325
+K +R VI ELGL++ D+ +G F+RGVSGGERKR I E+I +PS+LFLDEPT+G
Sbjct: 155 EKNERINKVIQELGLDKVADSKVGTQFIRGVSGGERKRTSIAMELITDPSILFLDEPTTG 214
Query: 326 LDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385
LDS+TA ++ +L+ +++ G+T++ +IHQP +F FD L LL G L++ G A EA+
Sbjct: 215 LDSSTANAVLLLLKRMSKQGRTIIFSIHQPRYSIFKLFDSLTLLASGRLMFHGPAQEALG 274
Query: 386 YFSSIG--CSPQIAMNPAEFLLDLANGNLHDVSVPSELQDRVQTENSENDTANGKPTPAI 443
YF +IG C P NPA+F LD+ NG+ V + E D + E +E + + K TP I
Sbjct: 275 YFGAIGFRCEPY--NNPADFFLDIINGDSSAVVLNRE--D-IGDEANETEEPSKKDTPLI 329
Query: 444 VHEYLVEAYETRVAENEKKKLMAPIPLDEEIKAKVSSPKRNWGASWIQQYTILFRRGIKE 503
E L E Y E K + D+ K S + + S+ Q + RR K
Sbjct: 330 --EKLAEFYVNSSFFKETKVELDKFSGDQRRKKLPSYKEVTYATSFCHQLKWISRRSFKN 387
Query: 504 HRHDYFSWLRITQVLATA---VILGLLWWQSDSKS-PKGLEDQAGLLFFIAVFWSXXXXX 559
+ I Q++ T +++G +++ D K+ P G++++AG+LFF+
Sbjct: 388 LLGN--PQASIAQLIVTVFLGLVIGAIFY--DLKNDPAGIQNRAGVLFFLTTNQCFSSVS 443
Query: 560 XXXXXXXQERAMLSKERAADMYRLSAYFLARTTSDXXXXXXXXXXXXX-XXYFMAGLRMG 618
+++ + E + YR+S+YF + SD YF+ GL+
Sbjct: 444 AVELLVVEKKLFIH-EYISGYYRVSSYFFGKLLSDLLPMRMLPSIIFTCITYFLLGLKPK 502
Query: 619 AGPFFLSMLTVFLSXXXXXXXXXXXXXXXMDLKKATTLASVTIMTFMLAGGYFV--QEVP 676
FF+ MLT+ + + AT L +++ + M+ G V + V
Sbjct: 503 VEAFFIMMLTLMMVAYSASSMALAIAAGQSVVSIATLLMTISFVFMMIFSGLLVNLKTVV 562
Query: 677 VFISWIRYMSFNFHTYKIL 695
++SW++Y+S + Y L
Sbjct: 563 PWLSWLQYLSIPRYGYAAL 581
|
|
| MGI|MGI:1347061 Abcg2 "ATP-binding cassette, sub-family G (WHITE), member 2" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 724 (259.9 bits), Expect = 1.4e-71, P = 1.4e-71
Identities = 181/548 (33%), Positives = 284/548 (51%)
Query: 150 LKFTDVTYKVILKG---MTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGR 206
L F +TY+V +K + + EK+IL+ I G + PG + A++GP+G GK++LL++L+ R
Sbjct: 37 LSFHHITYRVKVKSGFLVRKTVEKEILSDINGIMKPG-LNAILGPTGGGKSSLLDVLAAR 95
Query: 207 LMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQ 266
+ G + N P K G+V QDDV+ LTV+E L ++A LRLP T+ +
Sbjct: 96 KDPKGLSGDVLINGAPQPAHFKCCSGYVVQDDVVMGTLTVRENLQFSAALRLPTTMKNHE 155
Query: 267 KEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGL 326
K +R +I ELGLE+ D+ +G F+RG+SGGERKR IG E+I +PS+LFLDEPT+GL
Sbjct: 156 KNERINTIIKELGLEKVADSKVGTQFIRGISGGERKRTSIGMELITDPSILFLDEPTTGL 215
Query: 327 DSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAY 386
DS+TA ++ +L+ +++ G+T++ +IHQP +F FD L LL G L++ G A +A+ Y
Sbjct: 216 DSSTANAVLLLLKRMSKQGRTIIFSIHQPRYSIFKLFDSLTLLASGKLVFHGPAQKALEY 275
Query: 387 FSSIG--CSPQIAMNPAEFLLDLANGNLHDVSVPSELQDRVQTENSENDTANGKPTPAIV 444
F+S G C P NPA+F LD+ NG+ V + E QD + +E + KP V
Sbjct: 276 FASAGYHCEPY--NNPADFFLDVINGDSSAVMLNREEQDN-EANKTEEPSKGEKP----V 328
Query: 445 HEYLVEAYETRVAENEKKKLMAPIPLDEEIKAKVSSPKRNWGASWIQQYTILFRRGIKEH 504
E L E Y E K + +P +E K + + + S+ Q + RR K
Sbjct: 329 IENLSEFYINSAIYGETKAELDQLPGAQEKKGTSAFKEPVYVTSFCHQLRWIARRSFKNL 388
Query: 505 RHDYFSWLRITQVLATAVILGLLWWQS--DSK-SPKGLEDQAGLLFFIAVFWSXXXXXXX 561
+ + Q++ T VILGL+ D K G++++AG+LFF+
Sbjct: 389 LGN--PQASVAQLIVT-VILGLIIGAIYFDLKYDAAGMQNRAGVLFFLTTNQCFSSVSAV 445
Query: 562 XXXXXQERAMLSKERAADMYRLSAYFLARTTSDXXXXXXXXXXXXX-XXYFMAGLRMGAG 620
+++ + E + YR+S+YF + SD YFM GL+
Sbjct: 446 ELFVVEKKLFIH-EYISGYYRVSSYFFGKVMSDLLPMRFLPSVIFTCVLYFMLGLKKTVD 504
Query: 621 PFFLSMLTVFLSXXXXXXXXXXXXXXXMDLKKATTLASVTIMTFMLAGGYFV--QEVPVF 678
FF+ M T+ + + AT L ++ + ML G V + + +
Sbjct: 505 AFFIMMFTLIMVAYTASSMALAIATGQSVVSVATLLMTIAFVFMMLFSGLLVNLRTIGPW 564
Query: 679 ISWIRYMS 686
+SW++Y S
Sbjct: 565 LSWLQYFS 572
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q93YS4 | AB22G_ARATH | No assigned EC number | 0.7709 | 0.9892 | 0.9826 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| Your Input: | |||||||||||
| estExt_fgenesh4_pg.C_LG_XVI0528 | white-brown-complex ABC transporter family (744 aa) | ||||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 746 | |||
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 0.0 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 1e-141 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 6e-81 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 1e-76 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 4e-75 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 4e-73 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 6e-61 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 2e-59 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 2e-58 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 4e-50 | |
| pfam01061 | 210 | pfam01061, ABC2_membrane, ABC-2 type transporter | 5e-41 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 7e-41 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 9e-41 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 5e-40 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 3e-38 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 1e-36 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 4e-36 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 4e-36 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 8e-36 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 7e-35 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 9e-35 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 2e-34 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 6e-34 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 4e-33 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 4e-33 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 4e-33 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 6e-33 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 1e-31 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 2e-31 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 8e-31 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 9e-31 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 1e-30 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 1e-30 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 1e-30 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 4e-30 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 6e-30 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 8e-30 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 1e-29 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 1e-29 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 1e-29 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 5e-29 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 5e-29 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 6e-29 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 6e-29 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 7e-29 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 8e-29 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 2e-28 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 3e-28 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 3e-28 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 5e-28 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 9e-28 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 1e-27 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 1e-27 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 2e-27 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 2e-27 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 3e-27 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 5e-27 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 9e-27 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 1e-26 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 1e-26 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 2e-26 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 2e-26 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 2e-26 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 3e-26 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 4e-26 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 4e-26 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 5e-26 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 5e-26 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 6e-26 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 9e-26 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 1e-25 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 2e-25 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 8e-25 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 8e-25 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 2e-24 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 2e-24 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 3e-24 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 4e-24 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 4e-24 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 4e-24 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 8e-24 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 9e-24 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 9e-24 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 1e-23 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 1e-23 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 1e-23 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 1e-23 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 2e-23 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 2e-23 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 2e-23 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 3e-23 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 3e-23 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 3e-23 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 5e-23 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 5e-23 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 6e-23 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 6e-23 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 7e-23 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 8e-23 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 8e-23 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 1e-22 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 1e-22 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 1e-22 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 1e-22 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 2e-22 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 2e-22 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 2e-22 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 2e-22 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 2e-22 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 3e-22 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 3e-22 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 4e-22 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 4e-22 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 6e-22 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 6e-22 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 8e-22 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 8e-22 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 9e-22 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 1e-21 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 2e-21 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 3e-21 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 4e-21 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 4e-21 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 5e-21 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 5e-21 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 5e-21 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 6e-21 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 6e-21 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 9e-21 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 9e-21 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 1e-20 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 2e-20 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 2e-20 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 2e-20 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 2e-20 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 2e-20 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 3e-20 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 3e-20 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 3e-20 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 5e-20 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 6e-20 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 6e-20 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 7e-20 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 8e-20 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 1e-19 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 1e-19 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 2e-19 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 3e-19 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 4e-19 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 5e-19 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 7e-19 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 2e-18 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 2e-18 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 3e-18 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 3e-18 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 3e-18 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 4e-18 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 5e-18 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 6e-18 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 7e-18 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 7e-18 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 8e-18 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 8e-18 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 8e-18 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 8e-18 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 3e-17 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 4e-17 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 4e-17 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 4e-17 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 5e-17 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 7e-17 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 7e-17 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 7e-17 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 7e-17 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 1e-16 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 1e-16 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 1e-16 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 1e-16 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 1e-16 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 2e-16 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 2e-16 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 3e-16 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 3e-16 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 3e-16 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 3e-16 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 4e-16 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 4e-16 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 4e-16 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 5e-16 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 5e-16 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 5e-16 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 7e-16 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 8e-16 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 1e-15 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 2e-15 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 2e-15 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 2e-15 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 2e-15 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 2e-15 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 2e-15 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 2e-15 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 3e-15 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 4e-15 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 5e-15 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 5e-15 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 6e-15 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 6e-15 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 7e-15 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 7e-15 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 7e-15 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 9e-15 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 9e-15 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 9e-15 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 9e-15 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 1e-14 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 1e-14 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 1e-14 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 1e-14 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 2e-14 | |
| CHL00131 | 252 | CHL00131, ycf16, sulfate ABC transporter protein; | 2e-14 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 2e-14 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 3e-14 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 3e-14 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 3e-14 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 3e-14 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 5e-14 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 5e-14 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 5e-14 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 6e-14 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 7e-14 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 9e-14 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 9e-14 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 9e-14 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 1e-13 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 1e-13 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 1e-13 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 1e-13 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 1e-13 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 2e-13 | |
| PRK09580 | 248 | PRK09580, sufC, cysteine desulfurase ATPase compon | 2e-13 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 2e-13 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 2e-13 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 2e-13 | |
| COG4778 | 235 | COG4778, PhnL, ABC-type phosphonate transport syst | 2e-13 | |
| PRK10744 | 260 | PRK10744, pstB, phosphate transporter ATP-binding | 2e-13 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 2e-13 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 3e-13 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 4e-13 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 4e-13 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 4e-13 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 7e-13 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 8e-13 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 8e-13 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 9e-13 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 9e-13 | |
| PRK11300 | 255 | PRK11300, livG, leucine/isoleucine/valine transpor | 1e-12 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 2e-12 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 2e-12 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 2e-12 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 2e-12 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 2e-12 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 3e-12 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 3e-12 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 3e-12 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 3e-12 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 3e-12 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 3e-12 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 5e-12 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 6e-12 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 6e-12 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 8e-12 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 9e-12 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 9e-12 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 9e-12 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 1e-11 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 1e-11 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 2e-11 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 2e-11 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 2e-11 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 2e-11 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 3e-11 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 4e-11 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 1e-10 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 1e-10 | |
| PRK11831 | 269 | PRK11831, PRK11831, putative ABC transporter ATP-b | 2e-10 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 2e-10 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 3e-10 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 3e-10 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 3e-10 | |
| PRK14265 | 274 | PRK14265, PRK14265, phosphate ABC transporter ATP- | 3e-10 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 3e-10 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 3e-10 | |
| PRK11247 | 257 | PRK11247, ssuB, aliphatic sulfonates transport ATP | 3e-10 | |
| pfam12698 | 278 | pfam12698, ABC2_membrane_3, ABC-2 family transport | 3e-10 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 5e-10 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 5e-10 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 6e-10 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 6e-10 | |
| PRK09473 | 330 | PRK09473, oppD, oligopeptide transporter ATP-bindi | 8e-10 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 9e-10 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 1e-09 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 1e-09 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 1e-09 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 1e-09 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 1e-09 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 1e-09 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 2e-09 | |
| cd03236 | 255 | cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin | 3e-09 | |
| TIGR03415 | 382 | TIGR03415, ABC_choXWV_ATP, choline ABC transporter | 3e-09 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 4e-09 | |
| PRK10938 | 490 | PRK10938, PRK10938, putative molybdenum transport | 5e-09 | |
| PRK11022 | 326 | PRK11022, dppD, dipeptide transporter ATP-binding | 9e-09 | |
| COG2401 | 593 | COG2401, COG2401, ABC-type ATPase fused to a predi | 1e-08 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 1e-08 | |
| COG4170 | 330 | COG4170, SapD, ABC-type antimicrobial peptide tran | 1e-08 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 2e-08 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 2e-08 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 2e-08 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 3e-08 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 3e-08 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 1e-07 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 1e-07 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 2e-07 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 2e-07 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 2e-07 | |
| PRK13633 | 280 | PRK13633, PRK13633, cobalt transporter ATP-binding | 2e-07 | |
| PRK15064 | 530 | PRK15064, PRK15064, ABC transporter ATP-binding pr | 2e-07 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 2e-07 | |
| PRK13540 | 200 | PRK13540, PRK13540, cytochrome c biogenesis protei | 3e-07 | |
| cd03288 | 257 | cd03288, ABCC_SUR2, ATP-binding cassette domain 2 | 4e-07 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 4e-07 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 4e-07 | |
| PRK15079 | 331 | PRK15079, PRK15079, oligopeptide ABC transporter A | 6e-07 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 9e-07 | |
| cd03289 | 275 | cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 | 1e-06 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 2e-06 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 2e-06 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 3e-06 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 3e-06 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 4e-06 | |
| PRK13546 | 264 | PRK13546, PRK13546, teichoic acids export protein | 4e-06 | |
| PRK13545 | 549 | PRK13545, tagH, teichoic acids export protein ATP- | 6e-06 | |
| cd03238 | 176 | cd03238, ABC_UvrA, ATP-binding cassette domain of | 8e-06 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 1e-05 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 1e-05 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 1e-05 | |
| PRK14263 | 261 | PRK14263, PRK14263, phosphate ABC transporter ATP- | 2e-05 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 2e-05 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 5e-05 | |
| PRK10418 | 254 | PRK10418, nikD, nickel transporter ATP-binding pro | 5e-05 | |
| COG4615 | 546 | COG4615, PvdE, ABC-type siderophore export system, | 1e-04 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 2e-04 | |
| PRK15093 | 330 | PRK15093, PRK15093, antimicrobial peptide ABC tran | 2e-04 | |
| cd03227 | 162 | cd03227, ABC_Class2, ATP-binding cassette domain o | 2e-04 | |
| TIGR01194 | 555 | TIGR01194, cyc_pep_trnsptr, cyclic peptide transpo | 3e-04 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 4e-04 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 8e-04 | |
| pfam03193 | 161 | pfam03193, DUF258, Protein of unknown function, DU | 0.001 | |
| cd01854 | 211 | cd01854, YjeQ_EngC, Ribosomal interacting GTPase Y | 0.002 | |
| cd03271 | 261 | cd03271, ABC_UvrA_II, ATP-binding cassette domain | 0.002 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 0.003 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 0.003 | |
| pfam13304 | 256 | pfam13304, AAA_21, AAA domain | 0.003 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 0.004 | |
| PRK01889 | 356 | PRK01889, PRK01889, GTPase RsgA; Reviewed | 0.004 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 612 bits (1580), Expect = 0.0
Identities = 296/686 (43%), Positives = 425/686 (61%), Gaps = 80/686 (11%)
Query: 105 FTGFTMPPDEIADSKPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFTDVTYKVILKGM 164
F G D SKP S D +R+ P PI LKF DV Y+V + M
Sbjct: 4 FDGVENQNDGPDRSKPPSQD---------SRDLPSLLLSSCYPITLKFMDVCYRVKFENM 54
Query: 165 TSS---------------------EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLL 203
+ +E+ ILNG+TG +PGE+LA++GPSGSGK+TLLN L
Sbjct: 55 KNKGSNIKRILGHKPKISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNAL 114
Query: 204 SGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLT 263
+GR+ G+I N+ +K + + GFVTQDD+L+PHLTV+ETL + +LLRLP +LT
Sbjct: 115 AGRIQGNNFTGTILANNRKPTKQILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLT 174
Query: 264 KQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPT 323
KQ+K A VI+ELGL +C++T+IG SF+RG+SGGERKRV I +E++INPSLL LDEPT
Sbjct: 175 KQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPT 234
Query: 324 SGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383
SGLD+T A R+V L +A+ GKT+VT++HQPSSR++ FD +++L +G L+FGK S+A
Sbjct: 235 SGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDA 294
Query: 384 MAYFSSIGCSPQIAMNPAEFLLDLANGNLHDVSVPSELQDRVQTENSENDTANGKPTPAI 443
MAYF S+G SP MNPA+FLLDLANG V SE + N
Sbjct: 295 MAYFESVGFSPSFPMNPADFLLDLANGVCQTDGV------------SEREKPN------- 335
Query: 444 VHEYLVEAYETRVAENEKKKL-MAPIPLDEEIKAKVSSPKRNWG------ASWIQQYTIL 496
V + LV +Y T +A K + M+ P +S K + ++W Q++IL
Sbjct: 336 VKQSLVASYNTLLAPKVKAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQFSIL 395
Query: 497 FRRGIKEHRHDYFSWLRITQVLATAVILGLLWWQSDSKSPKGLEDQAGLLFFIAVFWSFF 556
+R +KE +H+ F+ LR+ QV+A A++ GL+WW SD + ++D+ GLLFFI++FW F
Sbjct: 396 LQRSLKERKHESFNTLRVFQVIAAALLAGLMWWHSDFRD---VQDRLGLLFFISIFWGVF 452
Query: 557 PIFTAIFTFPQERAMLSKERAADMYRLSAYFLARTTSDLPLNLVLPVLFLVIVYFMAGLR 616
P F ++F FPQERA+ KERA+ MY LS+YF+AR DLP+ L+LP +FL + Y+MAGL+
Sbjct: 453 PSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELILPTIFLTVTYWMAGLK 512
Query: 617 MGAGPFFLSMLTVFLSIVAAQGLGLAIGAILMDLKKATTLASVTIMTFMLAGGYFVQEVP 676
G F L++L + ++ +QGLGLA+GA +MD KKA+T+ +VT++ F+L GG++V ++P
Sbjct: 513 PELGAFLLTLLVLLGYVLVSQGLGLALGAAIMDAKKASTIVTVTMLAFVLTGGFYVHKLP 572
Query: 677 VFISWIRYMSFNFHTYKILLKIQYADISPIVNGM---------RTDSGFRE--------- 718
++WI+Y+S F++Y++L+ +QY + I + + R F E
Sbjct: 573 SCMAWIKYISTTFYSYRLLINVQYGEGKRISSLLGCSLPHGSDRASCKFVEEDVAGQISP 632
Query: 719 ---VCALVAMVFGYRLLAYLSLRKMK 741
V L+ M GYRLLAYL+LR++K
Sbjct: 633 ATSVSVLIFMFVGYRLLAYLALRRIK 658
|
Length = 659 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 427 bits (1100), Expect = e-141
Identities = 199/598 (33%), Positives = 306/598 (51%), Gaps = 52/598 (8%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP-TVGGSITYNDHPYSKSL 227
K +L ++G PGE+LA+MG SG+GKTTL+N L+ R + GS+ N P
Sbjct: 37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKE 96
Query: 228 KSKI-GFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDT 286
I +V QDD+ P LTV+E L + A LR+P +TK++K +R +V+ LGL +C +T
Sbjct: 97 MRAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANT 156
Query: 287 MIG-GSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAG 345
IG V+G+SGGERKR+ +E++ +P LLF DEPTSGLDS A +VQ+L+ +A+ G
Sbjct: 157 RIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKG 216
Query: 346 KTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGCSPQIAMNPAEFLL 405
KT++ TIHQPSS LF FDK+IL+ +G + Y G +A+ +FS +G NPA+F +
Sbjct: 217 KTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVPFFSDLGHPCPENYNPADFYV 276
Query: 406 DLANGNLHDVSVPSELQDRVQTENSENDTANGKPTPAIVHEYLVEAY--ETRVAENEKKK 463
+ +P +EN + I + V + V N
Sbjct: 277 QVLAV------IPG-------SENESRERIEK-----ICDSFAVSDIGRDMLVNTNLWSG 318
Query: 464 LMAPIPLDEEIKAKVSSPKRNWGASWIQQYTILFRRGIKEHRHDYFS-WLRITQVLATAV 522
+ D E + + ASW Q+ L +R D +R+ Q + TA+
Sbjct: 319 KAGGLVKDSE-----NMEGIGYNASWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAI 373
Query: 523 ILGLLWWQSDSKSPKGLEDQAGLLFFIAVFWSFFPIFTAIFTFPQERAMLSKERAADMYR 582
++GL++ + KG+++ G LF +F +F I F E + +E + +YR
Sbjct: 374 LIGLIYLGQGL-TQKGVQNINGALFLFLTNMTFQNVFPVINVFTAELPVFLRETRSGLYR 432
Query: 583 LSAYFLARTTSDLPLNLVLPVLFLVIVYFMAGLRMGAGPFFLSMLTVFLSIVAAQGLGLA 642
+SAYFLA+T ++LPL ++LP LF I Y+M GLR GA F + V L A G
Sbjct: 433 VSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYL 492
Query: 643 IGAILMDLKKATTLASVTIMTFMLAGGYFVQ--EVPVFISWIRYMSFNFHTYKILLKIQY 700
I A T+ ++ F+L GG+F+ +PV+ W+ Y+S+ + + LL Q+
Sbjct: 493 ISCAFSSTSMALTVGPPFVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQW 552
Query: 701 ADISPI----VN----------------GMRTDSGFREVCALVAMVFGYRLLAYLSLR 738
+D+ I N R + ++ LV ++F +RLLAY +LR
Sbjct: 553 SDVDNIECTSANTTGPCPSSGEVILETLSFRNADLYLDLIGLVILIFFFRLLAYFALR 610
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 255 bits (655), Expect = 6e-81
Identities = 100/233 (42%), Positives = 139/233 (59%), Gaps = 40/233 (17%)
Query: 147 PIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGR 206
+ L F ++T V K S K +L ++G PGE+ A+MGPSG+GK+TLLN L+GR
Sbjct: 1 GVTLSFRNLTVTV--KSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGR 58
Query: 207 LMEPTVGGSITYNDHP-YSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQ 265
V G + N P +S + IG+V QDD+L P LTV+ETL +AA LR
Sbjct: 59 RTGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLR-------- 110
Query: 266 QKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSG 325
G+SGGERKRV I E++ NPSLLFLDEPTSG
Sbjct: 111 -----------------------------GLSGGERKRVSIALELVSNPSLLFLDEPTSG 141
Query: 326 LDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378
LDS++AL+++ +L+ +A+ G+T++ +IHQPSS +F FDKL+LL +G ++YFG
Sbjct: 142 LDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 269 bits (690), Expect = 1e-76
Identities = 165/614 (26%), Positives = 274/614 (44%), Gaps = 43/614 (7%)
Query: 144 PTLP-IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNL 202
PT P LK ++ LK ++ DIL + G + PGE+ ++G GSG +TLL
Sbjct: 48 PTFPNALLKILTRGFR-KLKKFRDTKTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKT 106
Query: 203 LSGRL--MEPTVGGSITYNDHP---YSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLR 257
++ V G ITY+ K + + + + DV FPHLTV ETL +AA +
Sbjct: 107 IASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLDFAARCK 166
Query: 258 LPNT----LTKQQKEKRAIDVI-NELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIII 312
P +++++ K DV GL ++T +G FVRGVSGGERKRV I +
Sbjct: 167 TPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLG 226
Query: 313 NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVT-TIHQPSSRLFHKFDKLILLGK 371
+ D T GLDS TAL ++ L+ A T I+Q S + FDK+I+L +
Sbjct: 227 GAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYE 286
Query: 372 GSLLYFGKASEAMAYFSSIG--CSPQIAMNPAEFLLDLANGNLHDVSVPSELQDRVQTEN 429
G +YFG A +A YF +G C + A+FL L + + E +V
Sbjct: 287 GYQIYFGPADKAKQYFEKMGFKCPDRQTT--ADFLTSLTSPAERQIKPGYE--KKVPRTP 342
Query: 430 SENDT-----ANGKPTPAIVHEYLVEAYETRVAENEKKKLMAPIPLDEEIKAKVSSPKRN 484
E +T + EYL E+ E ++ +A ++K + P
Sbjct: 343 QEFETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAYRESHVAK-------QSKRTRPSSP 395
Query: 485 WGASWIQQYTILFRRGIKEHRHDYFSWL-RITQVLATAVILGLLWWQSDSKSPKGLEDQA 543
+ S+ Q R + + L + + A+IL +++ K+ +
Sbjct: 396 YTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNL-PKNTSDFYSRG 454
Query: 544 GLLFFIAVFWSFFPIFTAIFTFPQERAMLSKERAADMYRLSAYFLARTTSDLPLNLVLPV 603
G LFF A+ ++ F I + + R ++ K R +Y SA +A S++P ++ V
Sbjct: 455 GALFF-AILFNAFSSLLEIASMYEARPIVEKHRKYALYHPSADAIASIISEIPFKIIESV 513
Query: 604 LFLVIVYFMAGLRMGAGPFFLSMLTVFLSIVAAQGLGLAIGAILMDLKKATTLASVTIMT 663
+F +I+YFM R AG FF +L +F+ +A L +IGA+ L +A T A++ ++
Sbjct: 514 VFNIILYFMVNFRRTAGRFFFYLLILFICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLA 573
Query: 664 FMLAGGYFVQ--EVPVFISWIRYMSFNFHTYKILL-------KIQYADISPIVNGMRTDS 714
+ G+ + + + WI Y++ + ++ L+ + + + P G
Sbjct: 574 LSIYTGFAIPRPSMLGWSKWIYYVNPLAYAFESLMVNEFHGRRFECSQYVPSGGGYDNLG 633
Query: 715 GFREVCALVAMVFG 728
+VC +V G
Sbjct: 634 VTNKVCTVVGAEPG 647
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 241 bits (618), Expect = 4e-75
Identities = 97/212 (45%), Positives = 134/212 (63%), Gaps = 6/212 (2%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-PTVGGSITYNDHPYSKSL 227
ILN ++ V G+V+A++G SGSGKTTLL+ +SGR+ T G I +N P
Sbjct: 19 YARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQ 78
Query: 228 -KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDT 286
+ + +V QDD+L P LTV+ETLTY A+LRLP + ++KR DV L T
Sbjct: 79 FQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDV----LLRDLALT 134
Query: 287 MIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGK 346
IGG+ V+G+SGGER+RV I +++ +P +L LDEPTSGLDS TAL +V L +A +
Sbjct: 135 RIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNR 194
Query: 347 TVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378
V+ TIHQP S LF FD+++LL G ++Y G
Sbjct: 195 IVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 259 bits (663), Expect = 4e-73
Identities = 172/587 (29%), Positives = 272/587 (46%), Gaps = 90/587 (15%)
Query: 154 DVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVG 213
++TY+V +K E++ ILN + G V PG + ALMG SG+GKTTLLN+L+ R+ T G
Sbjct: 764 NLTYEVKIKK----EKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERV---TTG 816
Query: 214 ----GSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEK 269
G N P S + IG+V Q D+ P TV+E+L ++A LR P +++K +K +
Sbjct: 817 VITGGDRLVNGRPLDSSFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKME 876
Query: 270 RAIDVINELGLERCQDTMIG--GSFVRGVSGGERKRVCIGNEIIINP-SLLFLDEPTSGL 326
+VI L +E D ++G G G++ +RKR+ IG E++ P LLFLDEPTSGL
Sbjct: 877 YVEEVIKLLEMESYADAVVGVPGE---GLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGL 933
Query: 327 DSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGS-LLYF---GKASE 382
DS TA I ++++ +A+ G+ ++ TIHQPS+ LF +FD+L+LL KG +YF G+ S
Sbjct: 934 DSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGENSH 993
Query: 383 AM-AYFSSIGCS--PQIAMNPAEFLLDL--------ANGNLHDVSVPSELQDRVQTENSE 431
+ YF G P+ A NPAE++L++ AN + H+V S V+
Sbjct: 994 TIINYFEKHGAPKCPEDA-NPAEWMLEVIGAAPGAHANQDYHEVWRNSSEYQAVK----- 1047
Query: 432 NDTANGKPTPAIVHEYLVEAYETRVAENEKKKLMAPIPLDEEIKAKVSSPKRNWGASWIQ 491
NE +L A + E+ + AS
Sbjct: 1048 ---------------------------NELDRLEAELSKAEDDND--PDALSKYAASLWY 1078
Query: 492 QY-TILFRRGIKEHRHDYFSWLRITQVLATAVILGLLWWQSDSKSPKGLEDQAGLLFFIA 550
Q+ +L+R + R + + + + A+ +G +++ S +GL++Q +F
Sbjct: 1079 QFKLVLWRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFKVG-TSLQGLQNQMFAVFMAT 1137
Query: 551 VFW-----SFFPIFTAIFTFPQERAMLSKERAADMYRLSAYFLARTTSDLPLNLVLPVLF 605
V + + P F A Q +ER + + A+ A+ T ++P NLV +F
Sbjct: 1138 VLFNPLIQQYLPPFVA-----QRDLYEVRERPSRTFSWLAFIAAQITVEIPYNLVAGTIF 1192
Query: 606 LVIVYFMAGLRMGAGP-------FFLSMLTVFLSIVAAQGLGLAIGAILMDLKKATTLAS 658
I Y+ G A L L + + LG + + + A LAS
Sbjct: 1193 FFIWYYPVGFYWNASKTGQVHERGVLFWLLSTMFFLYFSTLGQMVISFNPNADNAAVLAS 1252
Query: 659 VTIMTFMLAGGYFVQEVPVFIS-WIRYMSFNFHTYKI--LLKIQYAD 702
+ T L+ + WI + TY + LL AD
Sbjct: 1253 -LLFTMCLSFCGVLAPPSRMPGFWIFMYRCSPFTYLVQALLSTGLAD 1298
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 202 bits (517), Expect = 6e-61
Identities = 92/233 (39%), Positives = 132/233 (56%), Gaps = 42/233 (18%)
Query: 147 PIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGR 206
L + ++ Y V +KG ++ +LN I+G V PG + ALMG SG+GKTTLL++L+GR
Sbjct: 1 GSVLTWKNLNYTVPVKG----GKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGR 56
Query: 207 LMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQ 266
+ G I N P K+ + G+V Q DV P+LTV+E L ++ALLR
Sbjct: 57 KTAGVITGEILINGRPLDKNFQRSTGYVEQQDVHSPNLTVREALRFSALLR--------- 107
Query: 267 KEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGL 326
G+S +RKR+ IG E+ PS+LFLDEPTSGL
Sbjct: 108 ----------------------------GLSVEQRKRLTIGVELAAKPSILFLDEPTSGL 139
Query: 327 DSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK-GSLLYFG 378
DS A IV+ L+ +A++G+ ++ TIHQPS+ +F KFD+L+LL + G +YFG
Sbjct: 140 DSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 202 bits (516), Expect = 2e-59
Identities = 78/227 (34%), Positives = 129/227 (56%), Gaps = 15/227 (6%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225
+K L+G++ V PGE+ L+GP+G+GKTTLL +L+G L++PT G I + K
Sbjct: 17 DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAG-LLKPT-SGEILVLGYDVVKEPA 74
Query: 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQD 285
++ +IG+V Q+ L+P LTV+E L + A L L+K++ E+R +++ GLE +
Sbjct: 75 KVRRRIGYVPQEPSLYPELTVRENLEFFARLY---GLSKEEAEERIEELLELFGLEDKAN 131
Query: 286 TMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAG 345
VR +SGG ++R+ I ++ +P LL LDEPTSGLD + I ++L+++A+ G
Sbjct: 132 K-----KVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEG 186
Query: 346 K-TVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIG 391
T++ + H D++I+L G ++ G E F G
Sbjct: 187 GVTILLSTHILEE-AEELCDRVIILNDGKIIAEGTPEELKEKFGGKG 232
|
Length = 293 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 215 bits (549), Expect = 2e-58
Identities = 163/589 (27%), Positives = 291/589 (49%), Gaps = 47/589 (7%)
Query: 144 PTLPIYLKFTDVTYKVIL----KGMTSSEEK-DILNGITGSVNPGEVLALMGPSGSGKTT 198
P P+ + F DV Y V + K +E++ +L +TG+ PG + ALMG SG+GKTT
Sbjct: 862 PFTPLAMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTT 921
Query: 199 LLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKI-GFVTQDDVLFPHLTVKETLTYAALLR 257
L+++L+GR + G I + P + ++I G+ Q+D+ P +TV+E+L Y+A LR
Sbjct: 922 LMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLR 981
Query: 258 LPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLL 317
LP ++K++K +V+ + L+ +D ++G V G+S +RKR+ I E++ NPS++
Sbjct: 982 LPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSII 1041
Query: 318 FLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK-GSLLY 376
F+DEPTSGLD+ A +++ +++ + G+TVV TIHQPS +F FD+L+L+ + G ++Y
Sbjct: 1042 FMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIY 1101
Query: 377 FG----KASEAMAYFSSIGCSPQIA--MNPAEFLLDLANGNLHDVSVPSELQDRVQTENS 430
G + + + YF +I P+I NPA ++L+++ S+ +E++ +
Sbjct: 1102 SGPLGRNSHKIIEYFEAIPGVPKIKEKYNPATWMLEVS-------SLAAEVKLGIDFAEH 1154
Query: 431 ENDTANGKPTPAIVHEYLVEAYETRVAENEKKKLMAPIPLDEEIKAKVSSPKRNWGASWI 490
++ + A+V K+L P P ++ + WG
Sbjct: 1155 YKSSSLYQRNKALV-----------------KELSTPPPGASDLYFATQYSQSTWG---- 1193
Query: 491 QQYTILFRRGIKEHRHDYFSWLRITQVLATAVILGLLWWQSDSK--SPKGLEDQAGLLFF 548
Q + L+++ R ++ +R LA A+++G ++W+ +K + L G ++
Sbjct: 1194 QFKSCLWKQWWTYWRSPDYNLVRFFFTLAAALMVGTIFWKVGTKRSNANDLTMVIGAMYA 1253
Query: 549 IAVFWSFFPIFTAIFTFPQERAMLSKERAADMYRLSAYFLARTTSDLPLNLVLPVLFLVI 608
+F T ER + +ERAA MY Y +A+ ++P L+ + +I
Sbjct: 1254 AVLFVGINNCSTVQPMVAVERTVFYRERAAGMYSALPYAIAQVVCEIPYVLIQTTYYTLI 1313
Query: 609 VYFMAGLRMGAGPFFLSMLTVFLSIVAAQGLGLAIGAILMDLKKATTLASVTIMTFMLAG 668
VY M A FF F S + G+ ++ + + A A+ F L
Sbjct: 1314 VYAMVAFEWTAAKFFWFYFISFFSFLYFTYYGMMTVSLTPNQQVAAIFAAAFYGLFNLFS 1373
Query: 669 GYFV--QEVPVFISWIRYMSFNFHTYKILLKIQYADI-SPI-VNGMRTD 713
G+F+ ++P + W ++ T L+ QY D+ I V G D
Sbjct: 1374 GFFIPRPKIPKWWVWYYWICPVAWTVYGLIVSQYGDVEDTIKVPGGAPD 1422
|
Length = 1470 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 173 bits (442), Expect = 4e-50
Identities = 75/215 (34%), Positives = 116/215 (53%), Gaps = 36/215 (16%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP-TVGGSITYNDHPY---S 224
+ IL +G V PGE++ ++G GSG +TLL L+ R +V G I YN PY +
Sbjct: 19 KIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA 78
Query: 225 KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ 284
+ +I +V+++DV FP LTV+ETL +A RC+
Sbjct: 79 EKYPGEIIYVSEEDVHFPTLTVRETLDFAL---------------------------RCK 111
Query: 285 DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA 344
G FVRG+SGGERKRV I ++ S+L D T GLDS+TAL I++ ++ +A+
Sbjct: 112 ----GNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADV 167
Query: 345 -GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378
T +++Q S ++ FDK+++L +G +Y+G
Sbjct: 168 LKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|216273 pfam01061, ABC2_membrane, ABC-2 type transporter | Back alignment and domain information |
|---|
Score = 148 bits (377), Expect = 5e-41
Identities = 65/214 (30%), Positives = 113/214 (52%), Gaps = 8/214 (3%)
Query: 491 QQYTILFRRGIKEHRHD--YFSWLRITQVLATAVILGLLWWQSDSKSPKGLEDQAGLLFF 548
Q L +R D R+ Q L A++ G ++ D+ G ++ GLLFF
Sbjct: 1 TQLKALLKREFLRRWRDPSLGLLWRLIQPLLMALVFGTVFGNLDT--SLGGLNRPGLLFF 58
Query: 549 IAVFWSFFPIFTAIFTFPQERAMLSKERAADMYRLSAYFLARTTSDLPLNLVLPVLFLVI 608
+F +F + F +ER +L +E A+ +Y SAY LA+ +LP++L+ ++FL+I
Sbjct: 59 SILFNAFSSLTGISPVFIRERGVLERELASPLYSPSAYVLAKILVELPISLLQAIIFLLI 118
Query: 609 VYFMAGLRMGAGPFFLSMLTVFLSIVAAQGLGLAIGAILMDLKKATTLASVTIMTFMLAG 668
VYFM GL + FFL +L + L+ +AA GLGL I A+ + A+ + + ++ +L
Sbjct: 119 VYFMVGLPVSR--FFLFLLVLLLTALAASGLGLFIAALAPSFEDASQIGPLLLLPLLLLS 176
Query: 669 GYF--VQEVPVFISWIRYMSFNFHTYKILLKIQY 700
G+F V +P ++ WI Y++ + + L ++
Sbjct: 177 GFFIPVDSMPGWLQWIYYLNPLTYAIEALRANEF 210
|
Length = 210 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 161 bits (409), Expect = 7e-41
Identities = 154/565 (27%), Positives = 270/565 (47%), Gaps = 79/565 (13%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPT--VGGSITYNDHPYSKSLKS 229
IL +G + P + L+GP SGKTTLL L+G+L +P+ V G ITYN + ++ +
Sbjct: 180 ILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKL-DPSLKVSGEITYNGYRLNEFVPR 238
Query: 230 KI-GFVTQDDVLFPHLTVKETLTYAALLR-------LPNTLTKQQKE-----KRAIDVIN 276
K +++Q+DV +TVKETL ++A + L + L +++K+ + +D+
Sbjct: 239 KTSAYISQNDVHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFM 298
Query: 277 E-------------------LGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPS-L 316
+ LGL+ C+DT++G +RG+SGG++KRV G E+I+ P+
Sbjct: 299 KATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTG-EMIVGPTKT 357
Query: 317 LFLDEPTSGLDSTTALRIVQMLQDI---AEAGKTVVTTIHQPSSRLFHKFDKLILLGKGS 373
LF+DE ++GLDS+T +IV+ LQ I EA TV+ ++ QP+ F FD +ILL +G
Sbjct: 358 LFMDEISTGLDSSTTYQIVKCLQQIVHLTEA--TVLMSLLQPAPETFDLFDDIILLSEGQ 415
Query: 374 LLYFGKASEAMAYFSSIGCSPQIAMNPAEFLLDLANGNLHDVSVPSELQDRVQTENSEND 433
++Y G + +F S G A+FL + V S+ +D+ Q N
Sbjct: 416 IVYQGPRDHILEFFESCGFKCPERKGTADFLQE----------VTSK-KDQEQYWADRN- 463
Query: 434 TANGKPTPAIVHEYLVEAYET-RVAENEKKKLMAPIPLDEEIKA-----KVSSPKRN-WG 486
KP I E +++ V + +L P + KA K S PK
Sbjct: 464 ----KPYRYISVSEFAERFKSFHVGMQLENELSVPFDKSQSHKAALVFSKYSVPKMELLK 519
Query: 487 ASWIQQYTILFRRGIKEHRHDYFSWLRITQVLATAVILGLLWWQSDSKSPKGLEDQA--- 543
A W +++ ++ R+ + + Q++ A I ++ +++ + + ED A
Sbjct: 520 ACWDKEWLLM-------KRNAFVYVFKTVQIIIVAAIASTVFLRTEMHT-RNEEDGALYI 571
Query: 544 GLLFFIAVFWSFFPIFTAIFTFPQERAMLSKERAADMYRLSAYFLARTTSDLPLNLVLPV 603
G L F ++ + F F + Q + K+R + + L +P++++ V
Sbjct: 572 GALLF-SMIINMFNGFAELALMIQRLPVFYKQRDLLFHPPWTFTLPTFLLGIPISIIESV 630
Query: 604 LFLVIVYFMAGLRMGAGPFFLSMLTVFLSIVAAQGLGLAIGAILMDLKKATTLASVTIMT 663
+++VI Y+ G A FF +L VFL A G+ I ++ + A T ++ ++
Sbjct: 631 VWVVITYYSIGFAPEASRFFKQLLLVFLIQQMAAGIFRLIASVCRTMIIANTGGALVLLL 690
Query: 664 FMLAGGYFV--QEVPVFISWIRYMS 686
L GG+ + E+P + W ++S
Sbjct: 691 VFLLGGFILPKGEIPNWWEWAYWVS 715
|
Length = 1470 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 148 bits (377), Expect = 9e-41
Identities = 75/217 (34%), Positives = 118/217 (54%), Gaps = 22/217 (10%)
Query: 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227
E+ + L + + GE +A++GPSGSGK+TLLNLL G L +PT G + N +K L
Sbjct: 16 EKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGG-LDKPT-SGEVLINGKDLTK-L 72
Query: 228 KSK---------IGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL 278
K IGFV Q+ L P LTV E + L+ + ++++ A +++ L
Sbjct: 73 SEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAG---KSAGRRKRAAEELLEVL 129
Query: 279 GLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQML 338
GLE D ++ +SGG+++RV I +I NP ++ DEPT LDS TA ++++L
Sbjct: 130 GLE---DRLL-KKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELL 185
Query: 339 QDIA-EAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374
+++ E GKT++ H P L D++I L G +
Sbjct: 186 RELNKERGKTIIMVTHDP--ELAKYADRVIELKDGKI 220
|
Length = 226 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 146 bits (371), Expect = 5e-40
Identities = 71/217 (32%), Positives = 114/217 (52%), Gaps = 21/217 (9%)
Query: 167 SEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS 226
E+ L G++ S+ GE +A++GPSGSGK+TLLN+L G L PT G + + SK
Sbjct: 14 GEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGG-LDRPT-SGEVRVDGTDISKL 71
Query: 227 --------LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL 278
+ IGFV Q L P LT E + LL + K+++ +RA +++ +
Sbjct: 72 SEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLA---GVPKKERRERAEELLERV 128
Query: 279 GLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQML 338
GL + + +SGG+++RV I + +P ++ DEPT LDS T ++++L
Sbjct: 129 GLGDRLNH-----YPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELL 183
Query: 339 QDIA-EAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374
+++ EAG T+V H P L D++I L G +
Sbjct: 184 RELNKEAGTTIVVVTHDP--ELAEYADRIIELRDGKI 218
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 141 bits (357), Expect = 3e-38
Identities = 72/224 (32%), Positives = 117/224 (52%), Gaps = 15/224 (6%)
Query: 159 VILKGMT-SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSIT 217
+ LKG++ + L+ ++ +V PGE LAL+GPSG GKTTLL L++G L P G I
Sbjct: 1 LELKGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAG-LERPD-SGEIL 58
Query: 218 YNDHPYSKSLKSK--IGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVI 275
+ + + IG V QD LFPHLTV E + + L+L + K + R +++
Sbjct: 59 IDGRDVTGVPPERRNIGMVFQDYALFPHLTVAENIAFG--LKL-RGVPKAEIRARVRELL 115
Query: 276 NELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIV 335
+GLE + + +SGG+++RV + + PSLL LDEP S LD+ +
Sbjct: 116 ELVGLEG-----LLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELR 170
Query: 336 QMLQDI-AEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378
+ L+++ E G T + H L D++ ++ +G ++ G
Sbjct: 171 EELKELQRELGITTIYVTHDQEEALALA-DRIAVMNEGRIVQVG 213
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 137 bits (348), Expect = 1e-36
Identities = 68/242 (28%), Positives = 118/242 (48%), Gaps = 21/242 (8%)
Query: 147 PIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGR 206
++ ++T + +L I+ SV GE+ AL+GP+G+GK+TLL + G
Sbjct: 2 MPMIEVENLTVSY--------GNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGL 53
Query: 207 LMEPTVGGSITYNDHPYSKSLKSKIGFVTQD---DVLFPHLTVKETLTYAALLRLPNTLT 263
L P+ G + + + +IG+V Q D FP +TVK+ + +
Sbjct: 54 LK-PSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFP-ITVKDVVLLGRYGKKGWFRR 111
Query: 264 KQQKEKRAID-VINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEP 322
+K+K +D + +G+E +D IG +SGG+++RV + + NP LL LDEP
Sbjct: 112 LNKKDKEKVDEALERVGMEDLRDRQIGE-----LSGGQKQRVLLARALAQNPDLLLLDEP 166
Query: 323 TSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382
+G+D I +L+++ + GKTV+ H + FD++I L + L+ G E
Sbjct: 167 FTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGL-VMAYFDRVICLNRH-LIASGPPEE 224
Query: 383 AM 384
+
Sbjct: 225 VL 226
|
Length = 254 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 135 bits (342), Expect = 4e-36
Identities = 57/185 (30%), Positives = 101/185 (54%), Gaps = 14/185 (7%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSIT---YNDHPYSKSLK 228
++ ++ +V GE+ L+G +G+GKTT L +L+G L PT G+ Y+ K+ +
Sbjct: 17 AVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGEL-RPT-SGTAYINGYSIRTDRKAAR 74
Query: 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMI 288
+G+ Q D LF LTV+E L + A L+ L K + ++ ++ LGL +
Sbjct: 75 QSLGYCPQFDALFDELTVREHLRFYARLK---GLPKSEIKEEVELLLRVLGLTDKANK-- 129
Query: 289 GGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTV 348
R +SGG ++++ + +I PS+L LDEPTSGLD + I ++ ++ + G+++
Sbjct: 130 ---RARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK-GRSI 185
Query: 349 VTTIH 353
+ T H
Sbjct: 186 ILTTH 190
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 133 bits (338), Expect = 4e-36
Identities = 56/211 (26%), Positives = 99/211 (46%), Gaps = 54/211 (25%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225
+K L+ I+ +V GE+ L+GP+G+GKTTL+ ++ G L++P G I K
Sbjct: 12 KKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILG-LLKPD-SGEIKVLGKDIKKEPE 69
Query: 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQD 285
+K +IG++ ++ L+ +LTV+E L
Sbjct: 70 EVKRRIGYLPEEPSLYENLTVRENLKL--------------------------------- 96
Query: 286 TMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAG 345
SGG ++R+ + ++ +P LL LDEPTSGLD + ++L+++ + G
Sbjct: 97 -----------SGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEG 145
Query: 346 KTVVTTIHQPS--SRLFHKFDKLILLGKGSL 374
KT++ + H RL D++ +L G +
Sbjct: 146 KTILLSSHILEEAERL---CDRVAILNNGRI 173
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 134 bits (339), Expect = 8e-36
Identities = 64/227 (28%), Positives = 117/227 (51%), Gaps = 22/227 (9%)
Query: 151 KFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP 210
+ ++++ + L+ I+ ++ GE + ++GP+GSGK+TLL LL+G L P
Sbjct: 1 ELKNLSFSY------PDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLL-GP 53
Query: 211 TVGGSITYNDHPYSKS----LKSKIGFVTQD-DVLFPHLTVKETLTYAALLRLPNTLTKQ 265
T G + + +K L+ K+G V Q+ D F TV+E + + L ++
Sbjct: 54 T-SGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENL---GLPEE 109
Query: 266 QKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSG 325
+ E+R + + +GLE +D +SGG+++RV I + ++P +L LDEPT+G
Sbjct: 110 EIEERVEEALELVGLEGLRDRSP-----FTLSGGQKQRVAIAGVLAMDPDILLLDEPTAG 164
Query: 326 LDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKG 372
LD ++++L+ + GKT++ H L D++I+L G
Sbjct: 165 LDPAGRRELLELLKKLKAEGKTIIIVTHDL-DLLLELADRVIVLEDG 210
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 133 bits (336), Expect = 7e-35
Identities = 71/223 (31%), Positives = 110/223 (49%), Gaps = 16/223 (7%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY----S 224
K IL+ ++ S+ GE+ ++GP+GSGK+TLL L+G L++P G + +
Sbjct: 14 GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAG-LLKPK-SGEVLLDGKDIASLSP 71
Query: 225 KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ 284
K L K+ +V Q LTV E L R P+ + K +++ E LE
Sbjct: 72 KELAKKLAYVPQSPSAPFGLTVYE---LVLLGRYPHLGLFGRPSKEDEEIVEEA-LELLG 127
Query: 285 DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA-E 343
+ V +SGGER+RV I + +L LDEPTS LD + ++++L+D+ E
Sbjct: 128 LEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNRE 187
Query: 344 AGKTVVTTIHQP--SSRLFHKFDKLILLGKGSLLYFGKASEAM 384
G TVV +H ++R D LILL G ++ G E +
Sbjct: 188 KGLTVVMVLHDLNLAAR---YADHLILLKDGKIVAQGTPEEVL 227
|
Length = 258 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 129 bits (328), Expect = 9e-35
Identities = 67/227 (29%), Positives = 105/227 (46%), Gaps = 61/227 (26%)
Query: 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME 209
++F +V++ K +L ++ ++ PGE +A++GPSGSGK+TLL LL RL +
Sbjct: 1 IEFKNVSFS------YPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLL-RLYD 53
Query: 210 PTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQ 265
PT G I + SL+ I +V QD LF T++E N L
Sbjct: 54 PT-SGEILIDGVDLRDLDLESLRKNIAYVPQDPFLF-SGTIRE-----------NIL--- 97
Query: 266 QKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSG 325
SGG+R+R+ I ++ +P +L LDE TS
Sbjct: 98 -------------------------------SGGQRQRIAIARALLRDPPILILDEATSA 126
Query: 326 LDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKG 372
LD T I++ L+ +A+ GKTV+ H+ S+ D++I+L G
Sbjct: 127 LDPETEALILEALRALAK-GKTVIVIAHRLST--IRDADRIIVLDDG 170
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 129 bits (326), Expect = 2e-34
Identities = 65/211 (30%), Positives = 99/211 (46%), Gaps = 52/211 (24%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP------ 222
+K +LN ++ ++ GE++AL+GPSGSGK+TLL ++G L EP GSI +
Sbjct: 12 QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAG-LEEPD-SGSILIDGEDLTDLED 69
Query: 223 YSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER 282
L+ +IG V QD LFPHLTV E +
Sbjct: 70 ELPPLRRRIGMVFQDFALFPHLTVLENIAL------------------------------ 99
Query: 283 CQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI- 341
G+SGG+++RV + + ++P +L LDEPTS LD T + +L+ +
Sbjct: 100 ------------GLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQ 147
Query: 342 AEAGKTVVTTIHQPSSRLFHKFDKLILLGKG 372
A+ G TVV H D++++L G
Sbjct: 148 AQLGITVVLVTHDLDE-AARLADRVVVLRDG 177
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 129 bits (327), Expect = 6e-34
Identities = 70/234 (29%), Positives = 118/234 (50%), Gaps = 19/234 (8%)
Query: 161 LKGMTSS-EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYN 219
L+G+T S + +L G+ V GE+LA++GPSGSGK+TLL L+ G L+ P G + +
Sbjct: 3 LRGLTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVG-LLRPD-SGEVLID 60
Query: 220 DHPYSK-------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAI 272
S L+ ++G + Q LF LTV E + A LR L++++ + +
Sbjct: 61 GEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENV--AFPLREHTRLSEEEIREIVL 118
Query: 273 DVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTAL 332
+ + +GL +D +SGG +KRV + + ++P LL DEPT+GLD +
Sbjct: 119 EKLEAVGLRGAEDLYPAE-----LSGGMKKRVALARALALDPELLLYDEPTAGLDPIASG 173
Query: 333 RIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385
I +++ + + G T + H + F D++ +L G ++ G E A
Sbjct: 174 VIDDLIRSLKKELGLTSIMVTHDLDT-AFAIADRIAVLYDGKIVAEGTPEELRA 226
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 126 bits (320), Expect = 4e-33
Identities = 67/195 (34%), Positives = 109/195 (55%), Gaps = 21/195 (10%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLL---NLLSGRLMEPTVGGSITYNDHPYSK 225
+ +L GI +V GEV+ ++GPSGSGK+TLL NLL E G+I + +
Sbjct: 12 DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLL-----EEPDSGTIIIDGLKLTD 66
Query: 226 S------LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG 279
L+ K+G V Q LFPHLTV E +T A + ++K + E+RA++++ ++G
Sbjct: 67 DKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKVK--GMSKAEAEERALELLEKVG 124
Query: 280 LERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQ 339
L D ++ +SGG+++RV I + +NP ++ DEPTS LD ++ +++
Sbjct: 125 LADKAD-----AYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMK 179
Query: 340 DIAEAGKTVVTTIHQ 354
D+AE G T+V H+
Sbjct: 180 DLAEEGMTMVVVTHE 194
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 127 bits (322), Expect = 4e-33
Identities = 74/238 (31%), Positives = 124/238 (52%), Gaps = 35/238 (14%)
Query: 165 TSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS 224
T K L ++ S+NPGE +AL+GPSG+GK+TLL L+G L+EPT GS+ + +
Sbjct: 9 TYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNG-LVEPT-SGSVLIDGTDIN 66
Query: 225 K-------SLKSKIGFVTQDDVLFPHLTVKET-----LTYAALLR-LPNTLTKQQKEKRA 271
K L+ +IG + Q L L+V E L + R L K++K+ RA
Sbjct: 67 KLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQ-RA 125
Query: 272 IDVINELGLE-----RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGL 326
+ + +GL R D + SGG+++RV I ++ P L+ DEP + L
Sbjct: 126 LAALERVGLLDKAYQRA-DQL---------SGGQQQRVAIARALMQQPKLILADEPVASL 175
Query: 327 DSTTALRIVQMLQDIA-EAGKTVVTTIHQPSSRLFHKF-DKLILLGKGSLLYFGKASE 382
D ++ +++ +L+ I E G TV+ ++HQ L ++ D+++ L G +++ G +E
Sbjct: 176 DPASSRQVMDLLKRINREEGITVIVSLHQVD--LAREYADRIVGLKDGRIVFDGPPAE 231
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 126 bits (320), Expect = 4e-33
Identities = 62/186 (33%), Positives = 98/186 (52%), Gaps = 12/186 (6%)
Query: 165 TSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS 224
L I+ SV GE +AL+GPSG GK+TLL +++G L PT G + + P
Sbjct: 12 GGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAG-LERPT-SGEVLVDGEP-V 68
Query: 225 KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ 284
G+V Q D L P LTV + + L+ + K + +RA +++ +GL +
Sbjct: 69 TGPGPDRGYVFQQDALLPWLTVLDNVALGLELQG---VPKAEARERAEELLELVGLSGFE 125
Query: 285 DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI-AE 343
+ ++ +SGG R+RV + + ++P +L LDEP S LD+ T ++ + L DI E
Sbjct: 126 N-----AYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRE 180
Query: 344 AGKTVV 349
GKTV+
Sbjct: 181 TGKTVL 186
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 126 bits (318), Expect = 6e-33
Identities = 66/224 (29%), Positives = 123/224 (54%), Gaps = 17/224 (7%)
Query: 159 VILKGMTSS-EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSIT 217
+ L+ +T +K L+G++ ++ PG + L+GP+G+GKTTL+ +L+ L P+ G+I
Sbjct: 1 LQLENLTKRYGKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILAT-LTPPS-SGTIR 57
Query: 218 YNDHPYSKS---LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDV 274
+ K L+ +IG++ Q+ ++P+ TV+E L Y A L+ + ++ + R +V
Sbjct: 58 IDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLK---GIPSKEVKARVDEV 114
Query: 275 INELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRI 334
+ + L IG +SGG R+RV I ++ +PS+L +DEPT+GLD +R
Sbjct: 115 LELVNLGDRAKKKIGS-----LSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRF 169
Query: 335 VQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378
+L ++ E + V+ + H +++ +L KG L++ G
Sbjct: 170 RNLLSELGE-DRIVILSTHIVEDVESL-CNQVAVLNKGKLVFEG 211
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 123 bits (310), Expect = 1e-31
Identities = 73/228 (32%), Positives = 117/228 (51%), Gaps = 27/228 (11%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225
+ +L ++ ++ G+ +A++GPSGSGK+T+L LL R + + GSI + +
Sbjct: 13 GRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLF-RFYDVS-SGSILIDGQDIREVTL 70
Query: 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAI-----DVINELG 279
SL+ IG V QD VLF + T+ + Y T ++ + A D I +
Sbjct: 71 DSLRRAIGVVPQDTVLF-NDTIGYNIRYGRP-----DATDEEVIEAAKAAQIHDKI--MR 122
Query: 280 LERCQDTMIGGSFVRGV--SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQM 337
DT++G RG+ SGGE++RV I I+ NP +L LDE TS LD+ T I
Sbjct: 123 FPDGYDTIVGE---RGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAA 179
Query: 338 LQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385
L+D++ G+T + H+ S+ DK+I+L G ++ G E +A
Sbjct: 180 LRDVS-KGRTTIVIAHRLST--IVNADKIIVLKDGRIVERGTHEELLA 224
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 123 bits (310), Expect = 2e-31
Identities = 69/193 (35%), Positives = 113/193 (58%), Gaps = 18/193 (9%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS-- 226
+K++L GI+ SV GEV+ ++GPSGSGK+TLL L+G L EP GSIT +
Sbjct: 14 DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNG-LEEPD-SGSITVDGEDVGDKKD 71
Query: 227 ---LKSKIGFVTQDDVLFPHLTVKETLTYA--ALLRLPNTLTKQQKEKRAIDVINELGLE 281
L+ K+G V Q LFPHLTV E +T A + +L K + ++A++++ ++GL
Sbjct: 72 ILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLS----KAEAREKALELLEKVGLA 127
Query: 282 RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI 341
D ++ +SGG+++RV I + ++P ++ DEPTS LD ++ +++D+
Sbjct: 128 DKAD-----AYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDL 182
Query: 342 AEAGKTVVTTIHQ 354
AE G T++ H+
Sbjct: 183 AEEGMTMIIVTHE 195
|
Length = 240 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 120 bits (303), Expect = 8e-31
Identities = 63/194 (32%), Positives = 99/194 (51%), Gaps = 23/194 (11%)
Query: 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225
++ L ++ + GE + L GPSG+GK+TLL L+ G PT G I N H S+
Sbjct: 15 REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEE-RPT-RGKILVNGHDLSRLKGR 72
Query: 226 ---SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKE--KRAIDVINELGL 280
L+ +IG V QD L P TV E + LR+ + K +E +R +V++ +GL
Sbjct: 73 EIPFLRRQIGVVFQDFRLLPDRTVYENVALP--LRV---IGKPPREIRRRVSEVLDLVGL 127
Query: 281 -ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQ 339
+ + +SGGE++RV I I+ P++L DEPT LD + I+++ +
Sbjct: 128 KHKARA------LPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFE 181
Query: 340 DIAEAGKTVVTTIH 353
+I G TV+ H
Sbjct: 182 EINRLGTTVLMATH 195
|
Length = 223 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 120 bits (303), Expect = 9e-31
Identities = 67/231 (29%), Positives = 116/231 (50%), Gaps = 28/231 (12%)
Query: 164 MTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY 223
K L ++ + GE + L+GP+GSGK+TLL LL+G L++PT G + +
Sbjct: 11 FRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNG-LLKPT-SGEVLVDGLDT 68
Query: 224 S-----KSLKSKIGFVTQDDVLFPHL-----TVKETLTYAAL-LRLPNTLTKQQKEKRAI 272
S L+ K+G V Q+ P TV++ + + L LP +++ E+R
Sbjct: 69 SSEKSLLELRQKVGLVFQN----PDDQLFGPTVEDEVAFGLENLGLP----REEIEERVA 120
Query: 273 DVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTAL 332
+ + +GLE D +SGG+++RV I + + P +L LDEPT+GLD
Sbjct: 121 EALELVGLEELLDRPP-----FNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRR 175
Query: 333 RIVQMLQDIA-EAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382
++++L+ + E GKT++ H + D++++L G +L G +E
Sbjct: 176 ELLELLKKLKEEGGKTIIIVTHDL-ELVLEYADRVVVLDDGKILADGDPAE 225
|
Length = 235 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 119 bits (301), Expect = 1e-30
Identities = 71/210 (33%), Positives = 103/210 (49%), Gaps = 20/210 (9%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK------- 225
L+GI S++ GE + L+GPSG+GK+TLL L+ PT G+I N S
Sbjct: 17 LDGINISISAGEFVFLVGPSGAGKSTLLKLIYKE-ELPT-SGTIRVNGQDVSDLRGRAIP 74
Query: 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQD 285
L+ KIG V QD L P V E + +A L + ++ KR + +GL
Sbjct: 75 YLRRKIGVVFQDFRLLPDRNVYENVAFA--LEVTGV-PPREIRKRVPAALELVGLSHKHR 131
Query: 286 TMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAG 345
+ +SGGE++RV I I+ +P++L DEPT LD T I+ +L+ I +AG
Sbjct: 132 AL-----PAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAG 186
Query: 346 KTVVTTIHQPSSRLFHKFDK-LILLGKGSL 374
TVV H + L +I L +G L
Sbjct: 187 TTVVVATH--AKELVDTTRHRVIALERGKL 214
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 119 bits (300), Expect = 1e-30
Identities = 64/205 (31%), Positives = 99/205 (48%), Gaps = 20/205 (9%)
Query: 182 PGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKS--------KIGF 233
EV + G SG+GK+TLL ++G L +P GG+I N S K KIG
Sbjct: 22 NEEVTGIFGASGAGKSTLLRCIAG-LEKPD-GGTIVLNGTVLFDSRKKINLPPQQRKIGL 79
Query: 234 VTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFV 293
V Q LFPHL V+E L + L R N + ++ +++ LGL+ + +
Sbjct: 80 VFQQYALFPHLNVRENLAFG-LKRKRNREDRISVDE----LLDLLGLDH-----LLNRYP 129
Query: 294 RGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIH 353
+SGGE++RV + + P LL LDEP S LD L+++ L+ I + V +
Sbjct: 130 AQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVT 189
Query: 354 QPSSRLFHKFDKLILLGKGSLLYFG 378
S + D+++++ G L Y G
Sbjct: 190 HDLSEAEYLADRIVVMEDGRLQYIG 214
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 123 bits (310), Expect = 1e-30
Identities = 56/181 (30%), Positives = 95/181 (52%), Gaps = 12/181 (6%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SLKS 229
++ I+ + GE + L+GPSG GKTTLL +++G +P+ G I + + K
Sbjct: 20 AVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAG-FEQPS-SGEILLDGEDITDVPPEKR 77
Query: 230 KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIG 289
IG V Q LFPH+TV+E + + L++ L K + + R + + +GLE
Sbjct: 78 PIGMVFQSYALFPHMTVEENVAFG--LKVRKKLKKAEIKARVEEALELVGLEG-----FA 130
Query: 290 GSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA-EAGKTV 348
+SGG+++RV + ++ P +L LDEP S LD+ ++ + L+++ E G T
Sbjct: 131 DRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITF 190
Query: 349 V 349
V
Sbjct: 191 V 191
|
Length = 352 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 118 bits (298), Expect = 4e-30
Identities = 54/189 (28%), Positives = 94/189 (49%), Gaps = 19/189 (10%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS------- 224
L+ ++ S+ GE L L+G SGSGK+TL + G + GSI ++
Sbjct: 20 ALDDVSFSIKKGETLGLVGESGSGKSTLARAILG--LLKPTSGSIIFDGKDLLKLSRRLR 77
Query: 225 KSLKSKIGFVTQD--DVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL-E 281
K + +I V QD L P +T+ E + + + K+ +++ + ++ +GL E
Sbjct: 78 KIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLS-KKEARKEAVLLLLVGVGLPE 136
Query: 282 RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI 341
+ + +SGG+R+RV I + +NP LL DEPTS LD + +I+ +L+ +
Sbjct: 137 EVLN-----RYPHELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKL 191
Query: 342 AEA-GKTVV 349
E G T++
Sbjct: 192 QEELGLTLL 200
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 120 bits (303), Expect = 6e-30
Identities = 78/284 (27%), Positives = 136/284 (47%), Gaps = 34/284 (11%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225
K ++ + ++ GE L L+GPSGSGKTT L +++ RL+EPT G I + S
Sbjct: 13 NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMIN-RLIEPT-SGEILIDGEDISDLDP 70
Query: 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTL--TKQQKEKRAIDVINELGLER 282
L+ KIG+V Q LFPHLTV E + +P L K++ +KRA ++++ +GL+
Sbjct: 71 VELRRKIGYVIQQIGLFPHLTVAENIAT-----VPKLLGWDKERIKKRADELLDLVGLDP 125
Query: 283 CQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI- 341
+ + +SGG+++RV + + +P +L +DEP LD T ++ + ++++
Sbjct: 126 SE---YADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQ 182
Query: 342 AEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGCSPQIAMNPA 401
E GKT+V H D++ ++ G ++ + E I NPA
Sbjct: 183 KELGKTIVFVTHD-IDEALKLADRIAVMDAGEIVQYDTPDE-------------ILANPA 228
Query: 402 -EFLLDLANGNLHDVSVPSELQDRVQTENSENDTANGKPTPAIV 444
+F+ D + + + S + E A+G+P
Sbjct: 229 NDFVEDFFGESERGLRLLSLVSVADAVRRGE--PADGEPLLEGF 270
|
Length = 309 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 117 bits (296), Expect = 8e-30
Identities = 75/226 (33%), Positives = 117/226 (51%), Gaps = 21/226 (9%)
Query: 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS--- 224
E+K +L I S+ PGE +A++GP+G+GKTTL+NLL R +P G I +
Sbjct: 14 EKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLM-RFYDPQ-KGQILIDGIDIRDIS 71
Query: 225 -KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL--GLE 281
KSL+S IG V QD LF T+ E + + + KE A D I +L G
Sbjct: 72 RKSLRSMIGVVLQDTFLFSG-TIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGY- 129
Query: 282 RCQDTMIG--GSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQ 339
DT++G G +S GER+ + I ++ +P +L LDE TS +D+ T I + L+
Sbjct: 130 ---DTVLGENGG---NLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALE 183
Query: 340 DIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385
+ + G+T + H+ S+ DK+++L G ++ G E +A
Sbjct: 184 KLMK-GRTSIIIAHRLSTIKNA--DKILVLDDGKIIEEGTHDELLA 226
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 116 bits (293), Expect = 1e-29
Identities = 59/209 (28%), Positives = 108/209 (51%), Gaps = 20/209 (9%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYND---HPYSK 225
+K IL+ + ++ G++ A++G SGSGK+TLLN++ L+E G + N P +
Sbjct: 10 DKVILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIG--LLEKFDSGQVYLNGQETPPLNS 67
Query: 226 SLKS-----KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL 280
S K+G++ Q+ L + TV+E L + L+K++K ++ + + ++GL
Sbjct: 68 KKASKFRREKLGYLFQNFALIENETVEENLDLGLKYK---KLSKKEKREKKKEALEKVGL 124
Query: 281 ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQD 340
I +SGGE++RV + I+ P L+ DEPT LD ++ +L +
Sbjct: 125 NLKLKQKI-----YELSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDLLLE 179
Query: 341 IAEAGKTVVTTIHQPSSRLFHKFDKLILL 369
+ + GKT++ H P + + D++I L
Sbjct: 180 LNDEGKTIIIVTHDPE--VAKQADRVIEL 206
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 118 bits (298), Expect = 1e-29
Identities = 74/239 (30%), Positives = 121/239 (50%), Gaps = 18/239 (7%)
Query: 153 TDVTYKVILKGMTSS-EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPT 211
+ ++G+T S ++ IL+G+ V GE+LA++G SGSGK+TLL L+ G L+ P
Sbjct: 3 ASPEPLIEVRGVTKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILG-LLRPD 61
Query: 212 VGGSITYNDHPYSK-------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTK 264
G I + + ++ ++G + Q LF LTV E + + LR L +
Sbjct: 62 -KGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAF--PLREHTKLPE 118
Query: 265 QQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTS 324
+ + + +GL + +SGG RKRV + I ++P LLFLDEPTS
Sbjct: 119 SLIRELVLMKLELVGL----RGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTS 174
Query: 325 GLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382
GLD +A I ++++++ +A G TV+ H S L D++ +L G ++ G E
Sbjct: 175 GLDPISAGVIDELIRELNDALGLTVIMVTHDLDS-LLTIADRVAVLADGKVIAEGTPEE 232
|
Length = 263 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 116 bits (293), Expect = 1e-29
Identities = 65/211 (30%), Positives = 112/211 (53%), Gaps = 15/211 (7%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKI 231
+L ++ V PGE LA++GP+G+GK+TLL + G L++PT G SI P K K +I
Sbjct: 14 VLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILG-LLKPTSG-SIRVFGKPLEKERK-RI 70
Query: 232 GFVTQD---DVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAID-VINELGLERCQDTM 287
G+V Q D FP ++V++ + + +K +D + +GL D
Sbjct: 71 GYVPQRRSIDRDFP-ISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQ 129
Query: 288 IGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKT 347
IG +SGG+++RV + ++ +P LL LDEP +G+D T I ++L+++ G T
Sbjct: 130 IGE-----LSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMT 184
Query: 348 VVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378
++ H + FD+++LL + ++ G
Sbjct: 185 ILVVTHDLGL-VLEYFDRVLLLNRT-VVASG 213
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 115 bits (290), Expect = 5e-29
Identities = 74/245 (30%), Positives = 123/245 (50%), Gaps = 27/245 (11%)
Query: 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME 209
++F +VT++ + +L I+ + GE +AL+GPSGSGK+TL+NL+ R +
Sbjct: 1 VEFKNVTFRY------PGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIP-RFYD 53
Query: 210 PTVGGSITYNDHPYS----KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQ 265
G I + H SL+ +IG V+QD LF + TV E + Y + +
Sbjct: 54 VD-SGRILIDGHDVRDYTLASLRRQIGLVSQDVFLF-NDTVAENIAYGRPGATREEVEEA 111
Query: 266 QKEKRAIDVINEL--GLERCQDTMIGGSFVRGV--SGGERKRVCIGNEIIINPSLLFLDE 321
+ A + I EL G DT+IG RGV SGG+R+R+ I ++ +P +L LDE
Sbjct: 112 ARAANAHEFIMELPEGY----DTVIG---ERGVKLSGGQRQRIAIARALLKDPPILILDE 164
Query: 322 PTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 381
TS LD+ + + L+ + + +T H+ S+ D++++L G ++ G
Sbjct: 165 ATSALDTESERLVQAALERLMK-NRTTFVIAHRLST--IENADRIVVLEDGKIVERGTHE 221
Query: 382 EAMAY 386
E +A
Sbjct: 222 ELLAQ 226
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 116 bits (292), Expect = 5e-29
Identities = 69/237 (29%), Positives = 117/237 (49%), Gaps = 33/237 (13%)
Query: 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225
L + +N GE++A++GPSG+GK+TLL L+G L++PT G I +N +K
Sbjct: 17 HQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNG-LVDPT-SGEILFNGVQITKLKGK 74
Query: 226 ---SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLP------NTLTKQQKEKRAIDVIN 276
L+ IG + Q L P L+V E + L +K+ K +A+D +
Sbjct: 75 ELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDK-AQALDALE 133
Query: 277 ELGLE-----RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTA 331
+G+ R T+ SGG+++RV I ++ P ++ DEP + LD +A
Sbjct: 134 RVGILDKAYQRA-STL---------SGGQQQRVAIARALVQQPKIILADEPVASLDPESA 183
Query: 332 LRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYF 387
+++ +L+DI + G TV+ +HQ + D++I L G +++ G ASE
Sbjct: 184 KKVMDILKDINQEDGITVIVNLHQVDLAKKY-ADRIIGLKAGRIVFDGPASELTDEA 239
|
Length = 258 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 118 bits (297), Expect = 6e-29
Identities = 67/224 (29%), Positives = 106/224 (47%), Gaps = 28/224 (12%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228
++L + + GE + L+GPSG GK+TLL +++G L EPT G I + +
Sbjct: 15 SFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAG-LEEPT-SGEILIDGRDVTDLPP 72
Query: 229 SK--IGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE----R 282
K I V Q+ L+PH+TV E + + LR + K + +KR +V LGLE R
Sbjct: 73 EKRGIAMVFQNYALYPHMTVYENIAFGLKLR---GVPKAEIDKRVKEVAKLLGLEHLLNR 129
Query: 283 CQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA 342
+SGG+R+RV + ++ P + LDEP S LD LR V M +I
Sbjct: 130 K---------PLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLD--AKLR-VLMRSEIK 177
Query: 343 EAGKTVVTTI----HQPSSRLFHKFDKLILLGKGSLLYFGKASE 382
+ + + TT H + D+++++ G + G E
Sbjct: 178 KLHERLGTTTIYVTHDQVEAMT-LADRIVVMNDGRIQQVGTPLE 220
|
Length = 338 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 114 bits (288), Expect = 6e-29
Identities = 67/210 (31%), Positives = 103/210 (49%), Gaps = 20/210 (9%)
Query: 171 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----- 225
L+ ++ + GE L L GPSG+GKTTLL LL G L P+ G + ++
Sbjct: 16 AALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALT-PS-RGQVRIAGEDVNRLRGRQ 73
Query: 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC 283
L+ +IG V QD L P TV E + +R +++ ++R + ++GLE
Sbjct: 74 LPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVR---GKKEREIQRRVGAALRQVGLEHK 130
Query: 284 QDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE 343
D F +SGGE++RV I I+ +P LL DEPT LD + RI+ +L+ + +
Sbjct: 131 ADA-----FPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNK 185
Query: 344 AGKTVVTTIHQPS-SRLFHKFDKLILLGKG 372
G TV+ H S ++I+L G
Sbjct: 186 RGTTVIVATHDLSLVDRVAH--RVIILDDG 213
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 115 bits (290), Expect = 7e-29
Identities = 63/179 (35%), Positives = 93/179 (51%), Gaps = 12/179 (6%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKI 231
+L I SV GE +A++GPSG GK+TLL L++G L +PT G + + P I
Sbjct: 18 VLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAG-LEKPT-SGEVLLDGRP-VTGPGPDI 74
Query: 232 GFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGS 291
G+V Q+D L P LTV + + LR +K + +RA +++ +GL +D
Sbjct: 75 GYVFQEDALLPWLTVLDNVALGLELRG---KSKAEARERAKELLELVGLAGFED-----K 126
Query: 292 FVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI-AEAGKTVV 349
+ +SGG R+RV I + P LL LDEP LD+ T + L + E KTV+
Sbjct: 127 YPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVL 185
|
Length = 248 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 115 bits (289), Expect = 8e-29
Identities = 74/233 (31%), Positives = 118/233 (50%), Gaps = 35/233 (15%)
Query: 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225
K L I ++NPGE +A++GPSG+GK+TLL ++ RL+EP+ GSI +K
Sbjct: 15 KQALKNINLNINPGEFVAIIGPSGAGKSTLLRCIN-RLVEPS-SGSILLEGTDITKLRGK 72
Query: 226 ---SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLP------NTLTKQQKEKRAIDVIN 276
L+ +IG + Q L LTV E + + L P +++ KE RA+ +
Sbjct: 73 KLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKE-RALSALE 131
Query: 277 ELGLE-----RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTA 331
+GL R D + SGG+++RV I + P L+ DEP + LD T+
Sbjct: 132 RVGLADKAYQRA-DQL---------SGGQQQRVAIARALAQQPDLILADEPIASLDPKTS 181
Query: 332 LRIVQMLQDIA-EAGKTVVTTIHQPSSRLFHKF-DKLILLGKGSLLYFGKASE 382
+++ L+ I E G TV+ +HQ L K+ D+++ L G +++ G SE
Sbjct: 182 KQVMDYLKRINKEDGITVIINLHQVD--LAKKYADRIVGLKAGEIVFDGAPSE 232
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 114 bits (287), Expect = 2e-28
Identities = 62/189 (32%), Positives = 102/189 (53%), Gaps = 19/189 (10%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDH-----PYSKSL 227
L+ ++ SV PGE+ L+GP+G+GKTTL NL+SG L PT GS+ ++ P +
Sbjct: 16 LDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFL-RPT-SGSVLFDGEDITGLPPHEIA 73
Query: 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTL-------TKQQKEKRAIDVINELGL 280
+ IG Q LFP LTV E + AA R + L +++ +RA +++ +GL
Sbjct: 74 RLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGL 133
Query: 281 ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQD 340
D G +S G+++R+ I + +P LL LDEP +GL+ + +++++
Sbjct: 134 ADLADRPAG-----ELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRE 188
Query: 341 IAEAGKTVV 349
+ E G TV+
Sbjct: 189 LRERGITVL 197
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 111 bits (280), Expect = 3e-28
Identities = 62/215 (28%), Positives = 102/215 (47%), Gaps = 50/215 (23%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---- 224
+ +L+ ++ S+ GE++ ++GP+G+GK+TLL L+G L++P+ G I + +
Sbjct: 11 GRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAG-LLKPS-SGEILLDGKDLASLSP 68
Query: 225 KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ 284
K L KI +V Q L L L ++ NEL
Sbjct: 69 KELARKIAYVPQ------------ALELLGLAHL--------ADRP----FNEL------ 98
Query: 285 DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA-E 343
SGGER+RV + + P +L LDEPTS LD + ++++L+ +A E
Sbjct: 99 ------------SGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARE 146
Query: 344 AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378
GKTVV +H + + D++ILL G ++ G
Sbjct: 147 RGKTVVMVLHDLNLAARY-ADRVILLKDGRIVAQG 180
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 120 bits (304), Expect = 3e-28
Identities = 74/261 (28%), Positives = 125/261 (47%), Gaps = 40/261 (15%)
Query: 124 DDIPEDIEAGTRERPKFQTEPTLPIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPG 183
D PE T P L ++F +V+++ ++ +L ++ + PG
Sbjct: 451 DTPPEQEGDKT-----LIHLPKLQGEIEFENVSFRYG------PDDPPVLEDLSLEIPPG 499
Query: 184 EVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDV 239
E +A++G SGSGK+TLL LL G +P G I + + SL+ ++G+V QD
Sbjct: 500 EKVAIVGRSGSGKSTLLKLLLGLY-KPQQ-GRILLDGVDLNDIDLASLRRQVGYVLQDPF 557
Query: 240 LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAI----DVINEL--GLERCQDTMIG--GS 291
LF +++E + P ++ E + + I L G DT +G G+
Sbjct: 558 LF-SGSIRENIALGN----PEATDEEIIEAAQLAGAHEFIENLPMGY----DTPVGEGGA 608
Query: 292 FVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTT 351
+SGG+R+R+ + ++ P +L LDE TS LD T I+Q L I + G+TV+
Sbjct: 609 ---NLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQ-GRTVIII 664
Query: 352 IHQPSSRLFHKFDKLILLGKG 372
H+ S+ D++I+L +G
Sbjct: 665 AHRLST--IRSADRIIVLDQG 683
|
Length = 709 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 118 bits (299), Expect = 5e-28
Identities = 69/257 (26%), Positives = 121/257 (47%), Gaps = 23/257 (8%)
Query: 134 TRERPKFQTEPTLPIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSG 193
K + PI + ++++ + K L+ + ++ G++ AL+G SG
Sbjct: 305 PGSGEKAEVANEPPIEISLENLSF-------RYPDGKPALSDLNLTIKAGQLTALVGASG 357
Query: 194 SGKTTLLNLLSGRLMEPTVGGSITYNDHPYS----KSLKSKIGFVTQDDVLFPHLTVKET 249
+GK+TLLNLL G L G I N ++ + +I +V+Q+ LF T++E
Sbjct: 358 AGKSTLLNLLLGFL--APTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAG-TIREN 414
Query: 250 LTYAALLRLPNTLTKQQKEKRAIDVIN-ELGLERCQDTMIGGSFVRGVSGGERKRVCIGN 308
+ A + + ++ + GL DT+IG G+SGG+ +R+ +
Sbjct: 415 ILLARPDASDEEIIAALDQAGLLEFVPKPDGL----DTVIGEG-GAGLSGGQAQRLALAR 469
Query: 309 EIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLIL 368
++ SLL LDEPT+ LD+ T I+Q LQ++A+ KTV+ H+ D++++
Sbjct: 470 ALLSPASLLLLDEPTAHLDAETEQIILQALQELAK-QKTVLVITHRLEDAA--DADRIVV 526
Query: 369 LGKGSLLYFGKASEAMA 385
L G L+ G E
Sbjct: 527 LDNGRLVEQGTHEELSE 543
|
Length = 559 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 118 bits (297), Expect = 9e-28
Identities = 77/270 (28%), Positives = 128/270 (47%), Gaps = 36/270 (13%)
Query: 125 DIPEDIEAGTRERPKFQTEPTLPIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGE 184
D ++E ++F +V++ +K +L I+ S+ PGE
Sbjct: 310 DEEPEVEDPPDPLKDTIGS------IEFENVSFSY-------PGKKPVLKDISFSIEPGE 356
Query: 185 VLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS----KSLKSKIGFVTQDDVL 240
+A++GPSGSGK+TL+ LL RL +PT G I + SL+ +IG V+QD +L
Sbjct: 357 KVAIVGPSGSGKSTLIKLLL-RLYDPT-SGEILIDGIDIRDISLDSLRKRIGIVSQDPLL 414
Query: 241 FPHLTVKETLTYAALLRLPNTLTKQQKEKRAI-----DVINELGLERCQDTMIGGSFVRG 295
F T++E + T ++ E+ + I L DT++G V
Sbjct: 415 F-SGTIRENIALGR-----PDATDEEIEEALKLANAHEFIAN--LPDGYDTIVGERGVN- 465
Query: 296 VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQP 355
+SGG+R+R+ I ++ NP +L LDE TS LD+ T ++Q G+T + H+
Sbjct: 466 LSGGQRQRLAIARALLRNPPILILDEATSALDTET-EALIQDALKKLLKGRTTLIIAHRL 524
Query: 356 SSRLFHKFDKLILLGKGSLLYFGKASEAMA 385
S+ D++I+L G ++ G E +A
Sbjct: 525 ST--IKNADRIIVLDNGRIVERGTHEELLA 552
|
Length = 567 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 110 bits (279), Expect = 1e-27
Identities = 56/185 (30%), Positives = 98/185 (52%), Gaps = 20/185 (10%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS----- 226
IL G++ +V GE++AL+G +G+GKTTLL + G + P GSI ++ +
Sbjct: 15 ILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMG--LLPPRSGSIRFDGRDITGLPPHER 72
Query: 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL--GLERCQ 284
++ IG+V + +FP LTV+E L A R ++ K K ++ + EL L+ +
Sbjct: 73 ARAGIGYVPEGRRIFPELTVEENLLLGAYAR------RRAKRKARLERVYELFPRLKERR 126
Query: 285 DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA 344
+ G+ SGGE++ + I ++ P LL LDEP+ GL I + ++++ +
Sbjct: 127 KQL-AGTL----SGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDE 181
Query: 345 GKTVV 349
G T++
Sbjct: 182 GVTIL 186
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 111 bits (281), Expect = 1e-27
Identities = 67/229 (29%), Positives = 114/229 (49%), Gaps = 26/229 (11%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY-----SKS 226
LN ++ + GE L ++G SGSGK+TL LL+G L +P+ G SI + P +K+
Sbjct: 22 ALNNVSLEIERGETLGIVGESGSGKSTLARLLAG-LEKPSSG-SILLDGKPLAPKKRAKA 79
Query: 227 LKSKIGFVTQD--DVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ 284
+ V QD L P TV L+ P+ L+K Q+ R ++++++GL
Sbjct: 80 FYRPVQMVFQDPYSSLNPRRTVGRILSEPLR---PHGLSKSQQ--RIAELLDQVGL---- 130
Query: 285 DTMIGGSFVR----GVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQD 340
SF+ +SGG+R+R+ I +I P LL LDEPTS LD + +I+ +L +
Sbjct: 131 ----PPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLE 186
Query: 341 IAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSS 389
+ + I + + H D++ ++ G ++ G E +++ S
Sbjct: 187 LKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLSHPSH 235
|
Length = 252 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 110 bits (276), Expect = 2e-27
Identities = 62/206 (30%), Positives = 111/206 (53%), Gaps = 15/206 (7%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228
L+ I+ SV GE+ L+GP+G+GKTT + ++ G ++ P G + ++ P + +
Sbjct: 12 RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILG-IILPD-SGEVLFDGKPLDIAAR 69
Query: 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMI 288
++IG++ ++ L+P + V + L Y A L+ L K++ +R + + L L +
Sbjct: 70 NRIGYLPEERGLYPKMKVIDQLVYLAQLK---GLKKEEARRRIDEWLERLELSEYAN--- 123
Query: 289 GGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTV 348
V +S G +++V +I +P LL LDEP SGLD + +++++A AGKTV
Sbjct: 124 --KRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTV 181
Query: 349 VTTIHQPSS--RLFHKFDKLILLGKG 372
+ + HQ L D+++LL KG
Sbjct: 182 ILSTHQMELVEEL---CDRVLLLNKG 204
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 110 bits (278), Expect = 2e-27
Identities = 65/219 (29%), Positives = 111/219 (50%), Gaps = 26/219 (11%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYN--DHPYSKSLKSK 230
L ++ V G+ ++GP+GSGK+ LL ++G ++P G I N D K
Sbjct: 15 LKNVSLEVERGDYFVILGPTGSGKSVLLETIAG-FIKPD-SGKILLNGKDITNLPPEKRD 72
Query: 231 IGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGG 290
I +V Q+ LFPH+TV + + Y R + K++ E++ +++ LG++ +
Sbjct: 73 ISYVPQNYALFPHMTVYKNIAYGLKKRKVD---KKEIERKVLEIAEMLGIDHLLN----- 124
Query: 291 SFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVT 350
+SGGE++RV I +++NP +L LDEP S LD T ++ + L+ I + + VT
Sbjct: 125 RKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRK--EFGVT 182
Query: 351 TIHQPSSRLFHKF-------DKLILLGKGSLLYFGKASE 382
+H + H F DK+ ++ G L+ GK E
Sbjct: 183 VLH-----VTHDFEEAWALADKVAIMLNGKLIQVGKPEE 216
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 110 bits (276), Expect = 3e-27
Identities = 68/217 (31%), Positives = 110/217 (50%), Gaps = 23/217 (10%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSG--RLMEPTVGGSITYNDHPYSKS 226
K +L I +NPGE++ L GPSGSGKTTLL L+ G + E GS+ +
Sbjct: 17 RKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQE----GSLKVLGQELYGA 72
Query: 227 -------LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG 279
L+ IG++ Q L LT ++ + A L L L+ Q+ +RA ++ +G
Sbjct: 73 SEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMA--LELQPNLSYQEARERARAMLEAVG 130
Query: 280 LERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQ 339
L D + +SGG+++RV I ++ P L+ DEPT+ LDS + +V+++Q
Sbjct: 131 LGDHLD-----YYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQ 185
Query: 340 DIA-EAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLL 375
+A E G T++ H R+ D+++ + G LL
Sbjct: 186 KLAREQGCTILIVTHDN--RILDVADRIVHMEDGKLL 220
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 109 bits (276), Expect = 5e-27
Identities = 69/225 (30%), Positives = 116/225 (51%), Gaps = 27/225 (12%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS----KSL 227
IL G++ ++ PG+ +AL+G SG GK+T+++LL R +PT G I + + L
Sbjct: 18 ILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLE-RFYDPTS-GEILLDGVDIRDLNLRWL 75
Query: 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKR---AIDVINEL--GLER 282
+S+IG V+Q+ VLF T+ E + Y + T + ++ + D I L G
Sbjct: 76 RSQIGLVSQEPVLFD-GTIAENIRYG---KPDATDEEVEEAAKKANIHDFIMSLPDGY-- 129
Query: 283 CQDTMIGGSFVRGV--SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQD 340
DT++G RG SGG+++R+ I ++ NP +L LDE TS LD+ + + + L
Sbjct: 130 --DTLVGE---RGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDR 184
Query: 341 IAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385
+ G+T + H+ S+ D + +L G ++ G E MA
Sbjct: 185 AMK-GRTTIVIAHRLST--IRNADLIAVLQNGQVVEQGTHDELMA 226
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 9e-27
Identities = 61/208 (29%), Positives = 105/208 (50%), Gaps = 18/208 (8%)
Query: 176 ITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSIT---YNDHPYSKSLKSKIG 232
++ GE+ L+G +G+GKTTLL +++ L+ P G +T + ++ KIG
Sbjct: 21 VSFEAEEGEITGLLGENGAGKTTLLRMIAT-LLIPD-SGKVTIDGVDTVRDPSFVRRKIG 78
Query: 233 FVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSF 292
+ + L+ LT +E L Y A L N L++++ + R ++ L L D
Sbjct: 79 VLFGERGLYARLTARENLKYFARL---NGLSRKEIKARIAELSKRLQLLEYLDRR----- 130
Query: 293 VRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTI 352
V S G +++V I ++ +PS+L LDEPTSGLD T + ++ + G+ V+ +
Sbjct: 131 VGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSS 190
Query: 353 H--QPSSRLFHKFDKLILLGKGSLLYFG 378
H Q L D++I+L KG ++ G
Sbjct: 191 HIMQEVEAL---CDRVIVLHKGEVVLEG 215
|
Length = 245 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 114 bits (288), Expect = 1e-26
Identities = 52/186 (27%), Positives = 93/186 (50%), Gaps = 17/186 (9%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS------ 226
++ ++ + GE L L+G SGSGK+TL +L+G L+ P+ GSI ++ +
Sbjct: 307 VDDVSFDLREGETLGLVGESGSGKSTLARILAG-LLPPS-SGSIIFDGQDLDLTGGELRR 364
Query: 227 --LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ 284
+ ++ F L P +TV + L LR+ + ++ R +++ +GL
Sbjct: 365 LRRRIQMVFQDPYSSLNPRMTVGDILAEP--LRIHGGGSGAERRARVAELLELVGLPP-- 420
Query: 285 DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI-AE 343
+ +SGG+R+RV I + + P LL LDEP S LD + +++ +L+D+ E
Sbjct: 421 --EFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEE 478
Query: 344 AGKTVV 349
G T +
Sbjct: 479 LGLTYL 484
|
Length = 539 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 111 bits (279), Expect = 1e-26
Identities = 61/208 (29%), Positives = 102/208 (49%), Gaps = 15/208 (7%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYN-----DHPYSKSL 227
L+ I+ + GE++AL+GPSG+GK+TLL +++G L P G I N D
Sbjct: 18 LDDISLDIKSGELVALLGPSGAGKSTLLRIIAG-LETPD-AGRIRLNGRVLFDVSNLAVR 75
Query: 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTM 287
K+GFV Q LFPH+TV + + + +R + + + + EL L Q
Sbjct: 76 DRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRAR-----VEEL-LRLVQLEG 129
Query: 288 IGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI-AEAGK 346
+ + +SGG+R+RV + + + P +L LDEP LD+ + + L+ + G
Sbjct: 130 LADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGV 189
Query: 347 TVVTTIHQPSSRLFHKFDKLILLGKGSL 374
T V H L D++++L +G +
Sbjct: 190 TTVFVTHDQEEALEL-ADRVVVLNQGRI 216
|
Length = 345 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 2e-26
Identities = 57/192 (29%), Positives = 100/192 (52%), Gaps = 17/192 (8%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP---TVGGSITYNDHP-YSKSL 227
++G++ + GE+L ++G SGSGK+ L + G L +P VGG I ++ S S
Sbjct: 20 AVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSE 79
Query: 228 K-------SKIGFVTQD--DVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL 278
K +I + QD L P +T+ + + L L+K++ ++RAI+++ +
Sbjct: 80 KELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIA-EVLRLHGKGLSKKEAKERAIELLELV 138
Query: 279 GLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQML 338
G+ S+ +SGG R+RV I + +NP LL DEPT+ LD T +I+ +L
Sbjct: 139 GIPD--PERRLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLL 196
Query: 339 QDIA-EAGKTVV 349
+++ E G ++
Sbjct: 197 KELQREKGTALI 208
|
Length = 316 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 2e-26
Identities = 65/202 (32%), Positives = 105/202 (51%), Gaps = 13/202 (6%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKI 231
L ++ ++ GE++ ++GPSG GKTTLLNL++G + P GSI N ++
Sbjct: 20 ALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAG-FVTP-SRGSIQLNGRRIEGP-GAER 76
Query: 232 GFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGS 291
G V Q++ L P L V + + + LR + K Q+ + A ++ +GLE + I
Sbjct: 77 GVVFQNEALLPWLNVIDNVAFGLQLR---GIEKAQRREIAHQMLALVGLEGAEHKYIW-- 131
Query: 292 FVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVT 350
+SGG R+RV I + + P LL LDEP LD+ T ++ ++L D+ + GK V+
Sbjct: 132 ---QLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLL 188
Query: 351 TIHQPSSRLFHKFDKLILLGKG 372
H LF +L++L G
Sbjct: 189 ITHDIEEALFLA-TRLVVLSPG 209
|
Length = 259 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 107 bits (270), Expect = 2e-26
Identities = 64/221 (28%), Positives = 115/221 (52%), Gaps = 16/221 (7%)
Query: 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDH-----PYS 224
+ ++NG++ SV GE++ L+GP+G+GKTT ++ G L++P G I + P
Sbjct: 13 RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVG-LVKPD-SGKILLDGQDITKLPMH 70
Query: 225 KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ 284
K + IG++ Q+ +F LTV+E + A L L+K+++E++ +++ E + +
Sbjct: 71 KRARLGIGYLPQEASIFRKLTVEENI-LAVLEIRG--LSKKEREEKLEELLEEFHITHLR 127
Query: 285 DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA 344
+ S +SGGER+RV I + NP L LDEP +G+D I ++++ + +
Sbjct: 128 KSK-ASS----LSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDR 182
Query: 345 GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385
G V+ T H D+ ++ +G +L G E A
Sbjct: 183 GIGVLITDHN-VRETLSITDRAYIIYEGKVLAEGTPEEIAA 222
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 106 bits (268), Expect = 3e-26
Identities = 66/220 (30%), Positives = 114/220 (51%), Gaps = 31/220 (14%)
Query: 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225
+E L+ ++ ++ GE +A++G GSGK+TLL LL+G L +PT GS+ + +
Sbjct: 15 QEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAG-LYKPT-SGSVLLDGTDIRQLD 72
Query: 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-- 281
L+ IG+V QD LF + T+++ +T A L ++R + G+
Sbjct: 73 PADLRRNIGYVPQDVTLF-YGTLRDNITLGAPL---------ADDERILRAAELAGVTDF 122
Query: 282 -----RCQDTMIG--GSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRI 334
D IG G RG+SGG+R+ V + ++ +P +L LDEPTS +D + R+
Sbjct: 123 VNKHPNGLDLQIGERG---RGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERL 179
Query: 335 VQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374
+ L+ + KT++ H+PS L D++I++ G +
Sbjct: 180 KERLRQLL-GDKTLIIITHRPS--LLDLVDRIIVMDSGRI 216
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 107 bits (268), Expect = 4e-26
Identities = 69/219 (31%), Positives = 105/219 (47%), Gaps = 21/219 (9%)
Query: 165 TSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS 224
E IL G+ V GE +A++GPSGSGK+TLL +L+G L +P+ G + P
Sbjct: 18 QGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAG-LDDPS-SGEVRLLGQPLH 75
Query: 225 K-------SLKSK-IGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVIN 276
K +L+++ +GFV Q L P+LT E + LR + + A ++
Sbjct: 76 KLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELR--GESSADSRA-GAKALLE 132
Query: 277 ELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQ 336
+GL + + +SGGE++RV + P +LF DEPT LD T +I
Sbjct: 133 AVGLGKRLT-----HYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIAD 187
Query: 337 MLQDI-AEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374
+L + E G T+V H P L + D+ + L G L
Sbjct: 188 LLFALNRERGTTLVLVTHDPQ--LAARCDRQLRLRSGRL 224
|
Length = 228 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 4e-26
Identities = 63/211 (29%), Positives = 113/211 (53%), Gaps = 19/211 (9%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228
+K +L+ I+ V GE+ +GP+G+GKTT + ++ G L++P G IT++ Y K+++
Sbjct: 12 KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILG-LIKPD-SGEITFDGKSYQKNIE 69
Query: 229 --SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAID-VINELGLERCQD 285
+IG + + +P+LT +E L A L K+ ID V++ +GL+
Sbjct: 70 ALRRIGALIEAPGFYPNLTARENLRLLARLL--------GIRKKRIDEVLDVVGLKD--- 118
Query: 286 TMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAG 345
V+G S G ++R+ I ++ NP LL LDEPT+GLD + +++ + + G
Sbjct: 119 --SAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQG 176
Query: 346 KTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376
TV+ + H S + D++ ++ KG L+
Sbjct: 177 ITVLISSHL-LSEIQKVADRIGIINKGKLIE 206
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 5e-26
Identities = 67/211 (31%), Positives = 114/211 (54%), Gaps = 18/211 (8%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSIT---YNDHPYSKSLKS 229
++G++ +V PGEV L+GP+G+GKTT L +L+G L+EP G T ++ +
Sbjct: 21 VDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAG-LLEPD-AGFATVDGFDVVKEPAEARR 78
Query: 230 KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIG 289
++GFV+ L+ LT +E L Y A L L + R ++ + LG+E D +G
Sbjct: 79 RLGFVSDSTGLYDRLTARENLEYFAGL---YGLKGDELTARLEELADRLGMEELLDRRVG 135
Query: 290 GSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVV 349
G S G R++V I ++ +P +L LDEPT+GLD + + ++ + GK ++
Sbjct: 136 G-----FSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCIL 190
Query: 350 TTIH--QPSSRLFHKFDKLILLGKGSLLYFG 378
+ H Q RL D++++L +G ++Y G
Sbjct: 191 FSTHIMQEVERL---CDRVVVLHRGRVVYEG 218
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 5e-26
Identities = 67/221 (30%), Positives = 110/221 (49%), Gaps = 25/221 (11%)
Query: 165 TSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS 224
+ +L G++ S+ GE++A++G SGSGK+TLL+LL G L PT G + +N S
Sbjct: 13 EGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGG-LDNPT-SGEVLFNGQSLS 70
Query: 225 KSLKSKI--------GFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVIN 276
K ++ GF+ Q L P T E + L+ + ++ ++RA +++
Sbjct: 71 KLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIG---KKSVKEAKERAYEMLE 127
Query: 277 ELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQ 336
++GLE + +SGGER+RV I ++ PSL+ DEPT LD+ A I
Sbjct: 128 KVGLEHRINHRPSE-----LSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFD 182
Query: 337 MLQDIAEAGKT---VVTTIHQPSSRLFHKFDKLILLGKGSL 374
++ ++ T VVT H L K D+++ + G L
Sbjct: 183 LMLELNRELNTSFLVVT--HDL--ELAKKLDRVLEMKDGQL 219
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 6e-26
Identities = 59/191 (30%), Positives = 98/191 (51%), Gaps = 18/191 (9%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDH---PYSKS--- 226
L+ ++ + GE+ ++G SG+GK+TLL L++ L PT GS+ + S++
Sbjct: 22 LDDVSLEIPKGEIFGIIGYSGAGKSTLLRLIN-LLERPT-SGSVFVDGQDLTALSEAELR 79
Query: 227 -LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQD 285
L+ KIG + Q L TV E + + L L K + ++R +++ +GL D
Sbjct: 80 QLRQKIGMIFQHFNLLSSRTVFENVAFP--LELAGV-PKAEIKQRVAELLELVGLSDKAD 136
Query: 286 TMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI-AEA 344
+ +SGG+++RV I + NP +L DE TS LD T I+++L+DI E
Sbjct: 137 -----RYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINREL 191
Query: 345 GKTVVTTIHQP 355
G T+V H+
Sbjct: 192 GLTIVLITHEM 202
|
Length = 339 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 111 bits (281), Expect = 9e-26
Identities = 66/233 (28%), Positives = 111/233 (47%), Gaps = 23/233 (9%)
Query: 165 TSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPT--VGGSITYN--- 219
T + ++ V PGE+L ++G SGSGK+TL L G L E G + +
Sbjct: 17 TDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRD 76
Query: 220 -----DHPYSKSLKSKIGFVTQD--DVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAI 272
+ K +I + QD L P +T+ + + LRL ++ + KRA+
Sbjct: 77 LLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIR--EALRLHGKGSRAEARKRAV 134
Query: 273 DVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTAL 332
+++ ++GL D + +SGG R+RV I + + P LL DEPT+ LD TT
Sbjct: 135 ELLEQVGLP---DPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQA 191
Query: 333 RIVQMLQDI-AEAGKTVVTTIHQPS--SRLFHKFDKLILLGKGSLLYFGKASE 382
+I+ +L+D+ E G V+ H + L D+++++ KG ++ G E
Sbjct: 192 QILDLLKDLQRELGMAVLFITHDLGVVAEL---ADRVVVMYKGEIVETGPTEE 241
|
Length = 539 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (265), Expect = 1e-25
Identities = 71/228 (31%), Positives = 119/228 (52%), Gaps = 26/228 (11%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYND------HPYSK 225
+L+GI V PGEV+A++GPSGSGKTTLL ++ L+E G+I D S+
Sbjct: 18 VLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCIN--LLEQPEAGTIRVGDITIDTARSLSQ 75
Query: 226 ------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG 279
L+ +GFV Q+ LFPH TV E + + + K++ RA +++ ++G
Sbjct: 76 QKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPV--IVKGEPKEEATARARELLAKVG 133
Query: 280 LERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQ 339
L + S+ R +SGG+++RV I + + P ++ DEPTS LD ++ ++
Sbjct: 134 LAGKET-----SYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIR 188
Query: 340 DIAEAGKTVVTTIHQPSSRLFHK--FDKLILLGKGSLLYFGKASEAMA 385
+A+ +T+V H+ S F + D+ I + +G ++ G A A
Sbjct: 189 QLAQEKRTMVIVTHEMS---FARDVADRAIFMDQGRIVEQGPAKALFA 233
|
Length = 250 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 2e-25
Identities = 60/227 (26%), Positives = 104/227 (45%), Gaps = 25/227 (11%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLL---NLLSGRLMEPTVGGSITYNDHPYSK 225
+K L I+ + GE+ AL+GPSG GK+TLL N L+ + G + +
Sbjct: 12 DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYD 71
Query: 226 ------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG 279
L+ ++G V Q FP ++ + + Y L K K +D E
Sbjct: 72 LDVDVLELRRRVGMVFQKPNPFP-GSIYDNVAYGLRLH-------GIKLKEELDERVEEA 123
Query: 280 LERCQ--DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQM 337
L + D + G+SGG+++R+C+ + P +L LDEPTS LD + +I ++
Sbjct: 124 LRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEEL 183
Query: 338 LQDIAEAGKTVVTT--IHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382
+ ++ + V+ T + Q ++R+ D+ L G L+ FG +
Sbjct: 184 IAELKKEYTIVIVTHNMQQ-AARV---ADRTAFLLNGRLVEFGPTEQ 226
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 8e-25
Identities = 67/223 (30%), Positives = 118/223 (52%), Gaps = 19/223 (8%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228
+K ++ I+ V PGE+ L+GP+G+GKTT ++ G L+EPT G IT+N P S+ +K
Sbjct: 14 DKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILG-LLEPT-EGEITWNGGPLSQEIK 71
Query: 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMI 288
++IG++ ++ L+P +TV++ L Y A L K + + LER +
Sbjct: 72 NRIGYLPEERGLYPKMTVEDQLKYLAEL-------KGMPKAEIQKKLQAW-LERLEIVGK 123
Query: 289 GGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLD--STTALRIVQMLQDIAEAGK 346
++ +S G ++++ + +I P LL LDEP SGLD + L+ + ++ E G
Sbjct: 124 KTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLK--DAIFELKEEGA 181
Query: 347 TVVTTIHQPS--SRLFHKFDKLILLGKGSLLYFGKASEAMAYF 387
T++ + H+ L D+L++L KG + +G + F
Sbjct: 182 TIIFSSHRMEHVEEL---CDRLLMLKKGQTVLYGTVEDIRRSF 221
|
Length = 300 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 8e-25
Identities = 67/214 (31%), Positives = 106/214 (49%), Gaps = 22/214 (10%)
Query: 179 SVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYN--DHPYSKSLKSKIGFVTQ 236
+V GE++A++GPSG+GK+TLLNL++G E G I N DH S + + + Q
Sbjct: 21 TVPAGEIVAILGPSGAGKSTLLNLIAG--FETPASGEILINGVDHTASPPAERPVSMLFQ 78
Query: 237 DDVLFPHLTVKETLTYAALLRLPN-TLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRG 295
++ LF HLTV + + L P L +Q+EK ++GL + G
Sbjct: 79 ENNLFAHLTVAQNI---GLGLSPGLKLNAEQREKVE-AAAAQVGLAGFLKRLPG-----E 129
Query: 296 VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA----EAGKTVVTT 351
+SGG+R+RV + ++ +L LDEP S LD ALR +ML ++ E T++
Sbjct: 130 LSGGQRQRVALARCLVREQPILLLDEPFSALDP--ALR-AEMLALVSQLCDERKMTLLMV 186
Query: 352 IHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385
H P D+++ L G + G E ++
Sbjct: 187 THHPED-AARIADRVVFLDNGRIAAQGSTQELLS 219
|
Length = 231 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 2e-24
Identities = 67/221 (30%), Positives = 117/221 (52%), Gaps = 20/221 (9%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLK 228
+N + + GE L L+GPSGSGKTT + +++ RL+EPT G I + + L+
Sbjct: 17 VNNLNLEIAKGEFLVLIGPSGSGKTTTMKMIN-RLIEPT-SGEIFIDGEDIREQDPVELR 74
Query: 229 SKIGFVTQDDVLFPHLTVKETL-TYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTM 287
KIG+V Q LFPH+TV+E + LL+ P K++ +RA +++ +GL+ +
Sbjct: 75 RKIGYVIQQIGLFPHMTVEENIALVPKLLKWP----KEKIRERADELLALVGLDPAE--- 127
Query: 288 IGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GK 346
+ +SGG+++RV + + +P LL +DEP LD T ++ + + + + GK
Sbjct: 128 FADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGK 187
Query: 347 TVVTTIH--QPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385
T+V H + RL D++ ++ G ++ G E +
Sbjct: 188 TIVFVTHDIDEAFRL---ADRIAIMKNGEIVQVGTPDEILR 225
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 2e-24
Identities = 59/221 (26%), Positives = 108/221 (48%), Gaps = 19/221 (8%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYND-----HPYSKS 226
L G++ V GE++AL+G +G+GKTTLL + G + G I ++ P +
Sbjct: 18 ALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMG--LVRPRSGRIIFDGEDITGLPPHER 75
Query: 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL--GLERCQ 284
+ I +V + +FP LTV+E L A R ++ ++R ++ + EL L+ +
Sbjct: 76 ARLGIAYVPEGRRIFPRLTVEENLLLGAYAR-----RDKEAQERDLEEVYELFPRLKERR 130
Query: 285 DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA 344
+ G+ SGGE++ + I ++ P LL LDEP+ GL I + ++++ +
Sbjct: 131 NQR-AGTL----SGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKE 185
Query: 345 GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385
G + + Q + D+ +L G ++ G A+E +A
Sbjct: 186 GGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLA 226
|
Length = 237 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 3e-24
Identities = 60/185 (32%), Positives = 92/185 (49%), Gaps = 15/185 (8%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS---LKS 229
++G+ V GEV +GP+G+GKTT + +L+ L+ PT G+ + + ++
Sbjct: 9 VDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTT-LLRPT-SGTARVAGYDVVREPRKVRR 66
Query: 230 KIGFVTQDDVLFPHLTVKETLT-YAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMI 288
IG V Q + LT +E L L LP K + E+RA +++ L D
Sbjct: 67 SIGIVPQYASVDEDLTGRENLEMMGRLYGLP----KDEAEERAEELLELFELGEAADRP- 121
Query: 289 GGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTV 348
V SGG R+R+ I +I P +LFLDEPT+GLD T I ++ + E G T+
Sbjct: 122 ----VGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTI 177
Query: 349 VTTIH 353
+ T H
Sbjct: 178 LLTTH 182
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 4e-24
Identities = 68/225 (30%), Positives = 119/225 (52%), Gaps = 19/225 (8%)
Query: 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY---- 223
+ IL+ I+ + PGEV+ ++G SGSGK+TL L+ G + + H
Sbjct: 13 DGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQR--FYVPENGRVLVDGHDLALAD 70
Query: 224 SKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKR---AIDVINELGL 280
L+ ++G V Q++VLF + ++++ + AL ++ + + + A D I+EL
Sbjct: 71 PAWLRRQVGVVLQENVLF-NRSIRDNI---ALADPGMSMERVIEAAKLAGAHDFISELPE 126
Query: 281 ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQD 340
DT++G G+SGG+R+R+ I +I NP +L DE TS LD + I++ + D
Sbjct: 127 G--YDTIVGEQGA-GLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHD 183
Query: 341 IAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385
I AG+TV+ H+ S+ D++I++ KG ++ G E +A
Sbjct: 184 IC-AGRTVIIIAHRLST--VKNADRIIVMEKGRIVEQGSHDELLA 225
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 97.4 bits (243), Expect = 4e-24
Identities = 46/133 (34%), Positives = 70/133 (52%), Gaps = 19/133 (14%)
Query: 197 TTLLNLLSGRLMEPTVGGSITYNDH-----PYSKSLKSKIGFVTQDDVLFPHLTVKETLT 251
+TLL L++G L++PT G+I + K L+ +IG V QD LFP LTV+E L
Sbjct: 1 STLLKLITG-LLQPT-SGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLF 58
Query: 252 YAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEII 311
+ L ++ + RA + + +GL D G+ SGG+++RV I ++
Sbjct: 59 FG--------LRDKEADARAEEALERVGLPDFLDREPVGTL----SGGQKQRVAIARALL 106
Query: 312 INPSLLFLDEPTS 324
P LL LDEPT+
Sbjct: 107 KKPKLLLLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 107 bits (268), Expect = 4e-24
Identities = 71/270 (26%), Positives = 128/270 (47%), Gaps = 35/270 (12%)
Query: 130 IEAGTRERPKFQTE----PTLPIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEV 185
+ ++P+ T L+ +V++ ++ L ++ GE
Sbjct: 313 LNDILDQKPEVTFPDEQTATTGQALELRNVSFTY------PGQQTKALKNFNLTLAQGEK 366
Query: 186 LALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS----KSLKSKIGFVTQDDVLF 241
+A++G SGSGK+TLL LL+G GSIT N + ++L+ I +TQ LF
Sbjct: 367 VAILGRSGSGKSTLLQLLAGAW--DPQQGSITLNGVEIASLDEQALRETISVLTQRVHLF 424
Query: 242 PHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFV------RG 295
T+++ L A P+ ++ + ++GLE+ ++ G R
Sbjct: 425 SG-TLRDNLRLAN----PDASDEE-----LWAALQQVGLEKLLESAPDGLNTWLGEGGRR 474
Query: 296 VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQP 355
+SGGER+R+ + ++ + L LDEPT GLD T +++ +L + AE GKT++ H+
Sbjct: 475 LSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAE-GKTLLMVTHR- 532
Query: 356 SSRLFHKFDKLILLGKGSLLYFGKASEAMA 385
R + D++I+L G ++ G +E +A
Sbjct: 533 -LRGLERMDRIIVLDNGKIIEEGTHAELLA 561
|
Length = 573 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 100 bits (252), Expect = 8e-24
Identities = 56/190 (29%), Positives = 102/190 (53%), Gaps = 13/190 (6%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDH-----PY 223
++ ++N ++ VN GE++ L+GP+G+GKTT ++ G L+ P G I +D P
Sbjct: 16 KRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVG-LVRPD-SGKILLDDEDITKLPM 73
Query: 224 SKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC 283
K + IG++ Q+ +F LTV++ + A L L K ++++ ++ E +
Sbjct: 74 HKRARLGIGYLPQEASIFRKLTVEDNIM-AVLEIREKDLKKAERKEELDALLEEFHITHL 132
Query: 284 QDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE 343
+D+ S +SGGER+RV I + NP + LDEP +G+D + I ++++ + +
Sbjct: 133 RDSK-AYS----LSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKD 187
Query: 344 AGKTVVTTIH 353
G V+ T H
Sbjct: 188 RGIGVLITDH 197
|
Length = 243 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 99.5 bits (248), Expect = 9e-24
Identities = 55/165 (33%), Positives = 83/165 (50%), Gaps = 14/165 (8%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP-TVGGSITYNDHPYSK--SLK 228
+L + ++ GE++ LMGPSG GK+TLL+ + G L + G + N+ + +
Sbjct: 17 LLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQ 76
Query: 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMI 288
+IG + QD +LFPHL+V + L +A LP TL + A + GL+
Sbjct: 77 RQIGILFQDALLFPHLSVGQNLLFA----LPATLKGNARRNAANAALERSGLDGAFH--- 129
Query: 289 GGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALR 333
+SGG+R RV + ++ P L LDEP S LD ALR
Sbjct: 130 --QDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDV--ALR 170
|
Length = 213 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 9e-24
Identities = 77/262 (29%), Positives = 125/262 (47%), Gaps = 47/262 (17%)
Query: 127 PEDIEAGTRE--RPKFQTEPTLPIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGE 184
P + GTR RP+ Q E ++F +V++ +E L+ ++ ++ PGE
Sbjct: 445 PVERPEGTRFLHRPRLQGE------IEFRNVSFAY------PGQETPALDNVSLTIRPGE 492
Query: 185 VLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYND------HPYSKSLKSKIGFVTQDD 238
+A++G GSGK+TLL LL G L +PT GS+ + P L+ IG+V QD
Sbjct: 493 KVAIIGRIGSGKSTLLKLLLG-LYQPT-EGSVLLDGVDIRQIDPAD--LRRNIGYVPQDP 548
Query: 239 VLFPHLTVKETLTYAALL----RLPNTLTKQQKEKRAIDVINEL--GLERCQDTMIG--G 290
LF + T+++ + A + + + GL D IG G
Sbjct: 549 RLF-YGTLRDNIALGAPYADDEEILRAAELAG----VTEFVRRHPDGL----DMQIGERG 599
Query: 291 SFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVT 350
R +SGG+R+ V + ++ +P +L LDEPTS +D+ + R L+ AGKT+V
Sbjct: 600 ---RSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWL-AGKTLVL 655
Query: 351 TIHQPSSRLFHKFDKLILLGKG 372
H+ S L D++I++ G
Sbjct: 656 VTHRTS--LLDLVDRIIVMDNG 675
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 100 bits (250), Expect = 1e-23
Identities = 64/223 (28%), Positives = 125/223 (56%), Gaps = 15/223 (6%)
Query: 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDH-----P 222
+ + ++ ++ +VN GE++ L+GP+G+GKTT ++ G + P G+I +D P
Sbjct: 14 KGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVG--IVPRDAGNIIIDDEDISLLP 71
Query: 223 YSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER 282
+ IG++ Q+ +F L+V + L A+L++ + L+ +Q+E RA +++ E +E
Sbjct: 72 LHARARRGIGYLPQEASIFRRLSVYDNLM--AVLQIRDDLSAEQREDRANELMEEFHIEH 129
Query: 283 CQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA 342
+D+M G S +SGGER+RV I + NP + LDEP +G+D + + I ++++ +
Sbjct: 130 LRDSM-GQS----LSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLR 184
Query: 343 EAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385
++G V+ T H L ++ ++ +G L+ G +E +
Sbjct: 185 DSGLGVLITDHNVRETL-AVCERAYIVSQGHLIAHGTPTEILQ 226
|
Length = 241 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 1e-23
Identities = 62/224 (27%), Positives = 105/224 (46%), Gaps = 21/224 (9%)
Query: 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225
K IL ++ VNPGE A++GP+G+GKTTLL+LL+G P G +T + K
Sbjct: 42 NGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGE--HPPSSGDVTLLGRRFGKGE 99
Query: 226 ---SLKSKIGFVT--QDDVLFPHLTVKETLT---YAALLRLPNTLTKQQKEKRAIDVINE 277
L+ +IG V+ + TV++ + +A++ LT + A ++
Sbjct: 100 TIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLA-AAQWLLEL 158
Query: 278 LGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQM 337
LG + + +S GE++RV I ++ +P LL LDEP GLD +++
Sbjct: 159 LGAKH-----LADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNR 213
Query: 338 LQDIA--EAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379
L+++A ++ H F +LL +G ++ GK
Sbjct: 214 LEELAASPGAPALLFVTHHAEEIP-PCFTHRLLLKEGEVVAQGK 256
|
Length = 257 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 1e-23
Identities = 52/191 (27%), Positives = 97/191 (50%), Gaps = 21/191 (10%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS-----KSL 227
+N ++ V PGE++ L+GP+G+GKTTL NL++G +P+ G++ + + +
Sbjct: 20 VNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFY-KPS-SGTVIFRGRDITGLPPHRIA 77
Query: 228 KSKIGFVTQDDVLFPHLTVKE--------TLTYAALLRLPNTLTKQQK-EKRAIDVINEL 278
+ I Q LFP LTV E L + LL P ++++ +RA +++ +
Sbjct: 78 RLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFV 137
Query: 279 GLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQML 338
GL D G +S G+++R+ I + P LL LDEP +GL+ + +++
Sbjct: 138 GLGELADRPAG-----NLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELI 192
Query: 339 QDIAEAGKTVV 349
+++ + G +
Sbjct: 193 RELRDRGGVTI 203
|
Length = 250 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 105 bits (265), Expect = 1e-23
Identities = 73/224 (32%), Positives = 116/224 (51%), Gaps = 21/224 (9%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---- 224
+ +L G+T +++PGEV+AL+GPSGSGK+T+ LL L +PT GG + + P
Sbjct: 493 DVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQ-NLYQPT-GGQVLLDGVPLVQYDH 550
Query: 225 KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ 284
L ++ V Q+ VLF +V+E + Y + K A D I E
Sbjct: 551 HYLHRQVALVGQEPVLFSG-SVRENIAYGLTDTPDEEIMAAAKAANAHDFIME--FPNGY 607
Query: 285 DTMIG--GSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA 342
DT +G GS +SGG+++R+ I ++ P +L LDE TS LD+ Q+LQ+
Sbjct: 608 DTEVGEKGSQ---LSGGQKQRIAIARALVRKPRVLILDEATSALDA----ECEQLLQESR 660
Query: 343 E-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385
A +TV+ H+ S + D++++L KGS++ G + M
Sbjct: 661 SRASRTVLLIAHRLS--TVERADQILVLKKGSVVEMGTHKQLME 702
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 2e-23
Identities = 71/221 (32%), Positives = 118/221 (53%), Gaps = 26/221 (11%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP--YSKS---- 226
L GI GE++AL+GP+G+GK+TL +G +++PT G + P Y K
Sbjct: 18 LKGINFKAEKGEMVALLGPNGAGKSTLFLHFNG-ILKPT-SGEVLIKGEPIKYDKKSLLE 75
Query: 227 LKSKIGFVTQ--DDVLF-PHLTVKETLTYAAL-LRLPNTLTKQQKEKRAIDVINELGLER 282
++ +G V Q DD LF P TV+E + + L L L K++ EKR + + +G+E
Sbjct: 76 VRKTVGIVFQNPDDQLFAP--TVEEDVAFGPLNLGLS----KEEVEKRVKEALKAVGMEG 129
Query: 283 CQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA 342
++ +SGG++KRV I + + P ++ LDEPTSGLD A +I+++L D+
Sbjct: 130 FENKP-----PHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLN 184
Query: 343 EAGKTVVTTIHQPSSRLFHKF-DKLILLGKGSLLYFGKASE 382
+ G T++ + H L + DK+ ++ G ++ G E
Sbjct: 185 KEGITIIISTHDVD--LVPVYADKVYVMSDGKIIKEGTPKE 223
|
Length = 275 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 99.5 bits (248), Expect = 2e-23
Identities = 68/192 (35%), Positives = 100/192 (52%), Gaps = 19/192 (9%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTL---LNLL----SGRLMEPTVGGSITYNDHPYSK 225
L IT GE L L+GPSG+GK++L LNLL SG L G ++ P K
Sbjct: 18 LFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLN--IAGNHFDFSKTPSDK 75
Query: 226 S---LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER 282
+ L+ +G V Q L+PHLTV+E L A L L+K Q RA ++ L L+
Sbjct: 76 AIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVL--GLSKDQALARAEKLLKRLRLKP 133
Query: 283 CQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA 342
D + +SGG+++RV I +++ P +L DEPT+ LD +IV +++++A
Sbjct: 134 YAD-----RYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELA 188
Query: 343 EAGKTVVTTIHQ 354
E G T V H+
Sbjct: 189 ETGITQVIVTHE 200
|
Length = 242 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 98.8 bits (247), Expect = 2e-23
Identities = 53/159 (33%), Positives = 79/159 (49%), Gaps = 14/159 (8%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL--KS 229
L+G++ + GE L+GPSG GKTTLL L++G PT G I + + K
Sbjct: 15 ALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAG-FETPT-SGEILLDGKDITNLPPHKR 72
Query: 230 KIGFVTQDDVLFPHLTVKETLTYA-ALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMI 288
+ V Q+ LFPHLTV E + + L +LP K ++ A+D++ G
Sbjct: 73 PVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIK-ERVAEALDLVQLEGYAN------ 125
Query: 289 GGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLD 327
+SGG+++RV I ++ P +L LDEP LD
Sbjct: 126 --RKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALD 162
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 99.5 bits (248), Expect = 3e-23
Identities = 69/230 (30%), Positives = 117/230 (50%), Gaps = 30/230 (13%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYN------------ 219
+L+G+ SV GE +AL+GPSGSGK+T+L +L +EP G I
Sbjct: 15 VLDGLNFSVAAGEKVALIGPSGSGKSTILRIL--MTLEPIDEGQIQVEGEQLYHMPGRNG 72
Query: 220 -----DHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDV 274
D + + +++KIG V Q LFPH TV + +T A +L L + + + EKRA+++
Sbjct: 73 PLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVL--GMARAEAEKRAMEL 130
Query: 275 INELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRI 334
++ +GL D +SGG+++RV I + + P ++ DE TS LD +
Sbjct: 131 LDMVGLADKAD-----HMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEV 185
Query: 335 VQMLQDIA-EAGKTVVTTIHQPSSRLFHKF-DKLILLGKGSLLYFGKASE 382
+ +++ +A E T++ H+ +F D++ KG ++ GK E
Sbjct: 186 LNVIRRLASEHDLTMLLVTHE--MGFAREFADRVCFFDKGRIVEQGKPDE 233
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 3e-23
Identities = 60/209 (28%), Positives = 96/209 (45%), Gaps = 24/209 (11%)
Query: 185 VLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYND---HPYSKSL-----KSKIGFVTQ 236
+ AL GPSGSGKT+L+N+++G L P G I N K + K +IG+V Q
Sbjct: 26 ITALFGPSGSGKTSLINMIAG-LTRPDEG-RIELNGRVLVDAEKGIFLPPEKRRIGYVFQ 83
Query: 237 DDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGV 296
D LFPH TV+ L Y + + + + + + LG+E D +
Sbjct: 84 DARLFPHYTVRGNLRYGM------WKSMRAQFDQLVAL---LGIEHLLDRY-----PGTL 129
Query: 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPS 356
SGGE++RV IG ++ P LL +DEP + LD I+ L+ + + + +
Sbjct: 130 SGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYVSHSL 189
Query: 357 SRLFHKFDKLILLGKGSLLYFGKASEAMA 385
+ D++++L G + G E
Sbjct: 190 DEVLRLADRVVVLENGKVKASGPLEEVWG 218
|
Length = 352 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 98.2 bits (245), Expect = 3e-23
Identities = 59/186 (31%), Positives = 99/186 (53%), Gaps = 16/186 (8%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---SLKS 229
+ G++ V GE+ L+GP+G+GKTT + +L+ L++PT G T H + ++
Sbjct: 16 VRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTT-LLKPT-SGRATVAGHDVVREPREVRR 73
Query: 230 KIGFVTQDDVLFPHLTVKETL-TYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMI 288
+IG V QD + LT E L +A L +P ++ R ++++ +GL D +
Sbjct: 74 RIGIVFQDLSVDDELTGWENLYIHARLYGVPGAERRE----RIDELLDFVGLLEAADRL- 128
Query: 289 GGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI-AEAGKT 347
V+ SGG R+R+ I ++ P +LFLDEPT GLD T + + ++ + E G T
Sbjct: 129 ----VKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMT 184
Query: 348 VVTTIH 353
++ T H
Sbjct: 185 ILLTTH 190
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 99.0 bits (247), Expect = 5e-23
Identities = 66/247 (26%), Positives = 122/247 (49%), Gaps = 31/247 (12%)
Query: 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME 209
++ +++Y + + +L+G++ + PGEVLA++GP+G+GK+TLL LSG +
Sbjct: 2 IRAENLSYSL--------AGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGE-LS 52
Query: 210 PTVGGSITYNDHPYS----KSLKSKIGFVTQDDVL-FPHLTVKETLTYAALLRLPNTLTK 264
P G +T N P + + L + Q+ L FP TV+E + + R+P+ +
Sbjct: 53 PD-SGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFP-FTVQEVV---QMGRIPHRSGR 107
Query: 265 QQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV------CIGNEIIINPSLLF 318
+ +E I L + + G R +SGGE++RV + + LF
Sbjct: 108 EPEEDER---IAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLF 164
Query: 319 LDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKF-DKLILLGKGSLLYF 377
LDEPTS LD +++ + +A G V+ +H + L ++ D+++LL +G ++
Sbjct: 165 LDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLN--LAAQYADRIVLLHQGRVIAS 222
Query: 378 GKASEAM 384
G + +
Sbjct: 223 GSPQDVL 229
|
Length = 259 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 96.7 bits (241), Expect = 5e-23
Identities = 61/194 (31%), Positives = 103/194 (53%), Gaps = 19/194 (9%)
Query: 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP--YSK 225
++L G+ + GEVLAL+G +G+GK+TLL L+G L+ P G++ + P YS+
Sbjct: 3 GGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNG-LLRPQ-SGAVLIDGEPLDYSR 60
Query: 226 S----LKSKIGFVTQ--DDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG 279
+ ++G V Q DD LF V + + + L L L++ + E+R + + +G
Sbjct: 61 KGLLERRQRVGLVFQDPDDQLF-AADVDQDVAFG-PLNL--GLSEAEVERRVREALTAVG 116
Query: 280 LERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQ 339
++ +SGGE+KRV I + + P +L LDEPT+GLD +++ +L+
Sbjct: 117 ASGLRERPT-----HCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILR 171
Query: 340 DIAEAGKTVVTTIH 353
+ G TVV + H
Sbjct: 172 RLRAEGMTVVISTH 185
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 98.0 bits (244), Expect = 6e-23
Identities = 71/207 (34%), Positives = 104/207 (50%), Gaps = 35/207 (16%)
Query: 171 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKS- 229
D+L+ ++ S+ GE++A++G SGSGK+TLL+LL G L PT G + +N P SK L S
Sbjct: 23 DVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGG-LDTPT-SGDVIFNGQPMSK-LSSA 79
Query: 230 --------KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE 281
K+GF+ Q L P T E A+ L + RA++++ +GLE
Sbjct: 80 AKAELRNQKLGFIYQFHHLLPDFTALEN---VAMPLLIGKKKPAEINSRALEMLAAVGLE 136
Query: 282 RCQDTMIGGSFVRG------VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIV 335
R +SGGER+RV I ++ NP L+ DEPT LD+ A I
Sbjct: 137 H-----------RANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIF 185
Query: 336 QMLQDIAEAGKT---VVTTIHQPSSRL 359
Q+L ++ T VVT Q + R+
Sbjct: 186 QLLGELNRLQGTAFLVVTHDLQLAKRM 212
|
Length = 233 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 97.9 bits (244), Expect = 6e-23
Identities = 63/213 (29%), Positives = 103/213 (48%), Gaps = 14/213 (6%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYN--DHPYSKSLKSK 230
L+ + V G ++AL+GPSGSGK+TLL +++G L +P G I N D + K
Sbjct: 16 LDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAG-LEQPD-SGRIRLNGQDATRVHARDRK 73
Query: 231 IGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGG 290
IGFV Q LF HLTV++ + + +R + + + EL LE Q +G
Sbjct: 74 IGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKAR-------VEEL-LELVQLEGLGD 125
Query: 291 SFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGK-TVV 349
+ +SGG+R+RV + + + P +L LDEP LD+ + L+ + + T V
Sbjct: 126 RYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTV 185
Query: 350 TTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382
H + D+++++ G + G E
Sbjct: 186 FVTHDQEEAM-EVADRIVVMSNGKIEQIGSPDE 217
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 96.9 bits (242), Expect = 7e-23
Identities = 60/189 (31%), Positives = 100/189 (52%), Gaps = 18/189 (9%)
Query: 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS-KS 226
+ +IL+ ++ + GE++AL G +G+GKTTL +L+G L++ + GSI N P K
Sbjct: 11 KGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAG-LIKES-SGSILLNGKPIKAKE 68
Query: 227 LKSKIGFVTQD--DVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ 284
+ IG+V QD LF +V+E L LL L ++ A V+ +L L +
Sbjct: 69 RRKSIGYVMQDVDYQLFTD-SVREEL----LLGLKELDAGNEQ---AETVLKDLDLYALK 120
Query: 285 DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA 344
+ +SGG+++R+ I ++ LL DEPTSGLD R+ ++++++A
Sbjct: 121 E-----RHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQ 175
Query: 345 GKTVVTTIH 353
GK V+ H
Sbjct: 176 GKAVIVITH 184
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 97.8 bits (244), Expect = 8e-23
Identities = 69/198 (34%), Positives = 100/198 (50%), Gaps = 29/198 (14%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTL---LNLL----SGRLMEPTVGGSITYNDHPYS 224
L IT GE L L+GPSG+GK++L LNLL SG L +I N +S
Sbjct: 17 ALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTL-------NIAGNHFDFS 69
Query: 225 K--------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVIN 276
K L+ +G V Q L+PHLTV++ L A L L+K Q RA ++
Sbjct: 70 KTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVL--GLSKDQALARAEKLLE 127
Query: 277 ELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQ 336
L L+ D F +SGG+++RV I +++ P +L DEPT+ LD +IV
Sbjct: 128 RLRLKPYAD-----RFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVS 182
Query: 337 MLQDIAEAGKTVVTTIHQ 354
+++++AE G T V H+
Sbjct: 183 IIRELAETGITQVIVTHE 200
|
Length = 242 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 102 bits (257), Expect = 8e-23
Identities = 77/272 (28%), Positives = 140/272 (51%), Gaps = 30/272 (11%)
Query: 121 FSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFTDVTYKVILKGMTSSEEKDILNGITGSV 180
F+ D P + + GTR + + + ++F +VT++ ++ L+ I+ +
Sbjct: 308 FTLLDSPPEKDTGTRAIERARGD------VEFRNVTFRY------PGRDRPALDSISLVI 355
Query: 181 NPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS----KSLKSKIGFVTQ 236
PGE +AL+G SGSGK+TL+NL+ R EP G I + H + SL+ ++ V+Q
Sbjct: 356 EPGETVALVGRSGSGKSTLVNLIP-RFYEPD-SGQILLDGHDLADYTLASLRRQVALVSQ 413
Query: 237 DDVLFPHLTVKETLTYAALLRLPNT-LTKQQKEKRAIDVINEL--GLERCQDTMIGGSFV 293
D VLF T+ + Y + + + A D +++L GL DT IG + V
Sbjct: 414 DVVLFND-TIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGL----DTPIGENGV 468
Query: 294 RGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIH 353
+SGG+R+R+ I ++ + +L LDE TS LD+ + + L+ + + G+T + H
Sbjct: 469 L-LSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQ-GRTTLVIAH 526
Query: 354 QPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385
+ S+ K D+++++ G ++ G +E +A
Sbjct: 527 RLST--IEKADRIVVMDDGRIVERGTHNELLA 556
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 100 bits (250), Expect = 1e-22
Identities = 70/217 (32%), Positives = 104/217 (47%), Gaps = 29/217 (13%)
Query: 182 PG-EVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKS--------KIG 232
PG V A+ G SGSGKTTL+ L++G L P G I N S K +IG
Sbjct: 21 PGQGVTAIFGRSGSGKTTLIRLIAG-LTRPD-EGEIVLNGRTLFDSRKGIFLPPEKRRIG 78
Query: 233 FVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAID---VINELGLERCQDTMIG 289
+V Q+ LFPHL+V+ L Y + + + +R I VI LG+ +
Sbjct: 79 YVFQEARLFPHLSVRGNLRYG--------MKRARPSERRISFERVIELLGIGH-----LL 125
Query: 290 GSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI-AEAGKTV 348
G +SGGE++RV IG ++ +P LL +DEP + LD I+ L+ + AE G +
Sbjct: 126 GRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPI 185
Query: 349 VTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385
+ H L D++++L G + G +E A
Sbjct: 186 LYVSHSLQEVL-RLADRVVVLEDGRVAAAGPIAEVWA 221
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 98.1 bits (245), Expect = 1e-22
Identities = 57/194 (29%), Positives = 96/194 (49%), Gaps = 27/194 (13%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKS--- 229
+N ++ V GE+ +MG SGSGK+TLL ++ RL+EPT G + + + +
Sbjct: 40 VNDVSLDVREGEIFVIMGLSGSGKSTLLRCIN-RLIEPT-SGKVLIDGQDIAAMSRKELR 97
Query: 230 -----KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ 284
KI V Q L PH TV E + + ++ + + ++E+RA + + +GLE +
Sbjct: 98 ELRRKKISMVFQSFALLPHRTVLENVAFGLEVQ---GVPRAEREERAAEALELVGLEGWE 154
Query: 285 DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI--- 341
+ +SGG ++RV + + ++P +L +DE S LD I + +QD
Sbjct: 155 H-----KYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPL----IRREMQDELLR 205
Query: 342 --AEAGKTVVTTIH 353
AE KT+V H
Sbjct: 206 LQAELQKTIVFITH 219
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 97.5 bits (243), Expect = 1e-22
Identities = 80/253 (31%), Positives = 122/253 (48%), Gaps = 50/253 (19%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLL---NLLSGRLMEPTVGGSITYNDHP-YS 224
+K LN ++ P E+ AL+GPSGSGK+TLL N ++ E T+ GSI YN H YS
Sbjct: 17 KKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYS 76
Query: 225 K-----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG 279
L+ +IG V Q FP +++ E + Y LRL K K+K+ +D E
Sbjct: 77 PRTDTVDLRKEIGMVFQQPNPFP-MSIYENVVYG--LRL-----KGIKDKQVLDEAVEKS 128
Query: 280 L----------ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDST 329
L +R D+ +G +SGG+++RVCI + +P ++ LDEPTS LD
Sbjct: 129 LKGASIWDEVKDRLHDSALG------LSGGQQQRVCIARVLATSPKIILLDEPTSALDPI 182
Query: 330 TALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFS 388
+A +I + L + + +VT Q +SR+ D+ G L+ +
Sbjct: 183 SAGKIEETLLGLKDDYTMLLVTRSMQQASRI---SDRTGFFLDGDLIEYND--------- 230
Query: 389 SIGCSPQIAMNPA 401
+ Q+ MNP
Sbjct: 231 ----TKQMFMNPK 239
|
Length = 252 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 97.7 bits (243), Expect = 1e-22
Identities = 62/204 (30%), Positives = 109/204 (53%), Gaps = 27/204 (13%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---- 224
E ++L G++ N G+V++++G SGSGK+T L ++ +E GSI N +
Sbjct: 17 EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCIN--FLEKPSEGSIVVNGQTINLVRD 74
Query: 225 -------------KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRA 271
+ L++++ V Q L+ H+TV E + A + L L+KQ+ +RA
Sbjct: 75 KDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL--GLSKQEARERA 132
Query: 272 IDVINELGL-ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTT 330
+ + ++G+ ER Q G + +SGG+++RV I + + P +L DEPTS LD
Sbjct: 133 VKYLAKVGIDERAQ-----GKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPEL 187
Query: 331 ALRIVQMLQDIAEAGKTVVTTIHQ 354
+++++Q +AE GKT+V H+
Sbjct: 188 VGEVLRIMQQLAEEGKTMVVVTHE 211
|
Length = 257 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 96.7 bits (241), Expect = 2e-22
Identities = 65/193 (33%), Positives = 108/193 (55%), Gaps = 21/193 (10%)
Query: 171 DILNGITGSVNPGEVLALMGPSGSGKTTLL---NLL----SGRLMEPTVGGSITYNDHPY 223
+L+ I +++ GEV+ ++GPSGSGK+TLL N L SG L+ V G +
Sbjct: 15 QVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLI---VDGLKVNDPKVD 71
Query: 224 SKSLKSKIGFVTQDDVLFPHLTVKETLTYAAL-LRLPNTLTKQQKEKRAIDVINELGL-E 281
+ ++ + G V Q LFPHLT E + + L +R +K++ EK+A +++ ++GL E
Sbjct: 72 ERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVR---GASKEEAEKQARELLAKVGLAE 128
Query: 282 RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI 341
R + +SGG+++RV I + + P L+ DEPTS LD +++++QD+
Sbjct: 129 R------AHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDL 182
Query: 342 AEAGKTVVTTIHQ 354
AE G T+V H+
Sbjct: 183 AEEGMTMVIVTHE 195
|
Length = 240 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 94.6 bits (236), Expect = 2e-22
Identities = 57/213 (26%), Positives = 88/213 (41%), Gaps = 54/213 (25%)
Query: 164 MTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP- 222
E +L ++ S+ PGE LA++GPSGSGK+TL L+ G L+ PT G + +
Sbjct: 9 RYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILG-LLRPT-SGRVRLDGADI 66
Query: 223 ---YSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG 279
L +G++ QDD LF ++ E N L
Sbjct: 67 SQWDPNELGDHVGYLPQDDELFSG-SIAE-----------NIL----------------- 97
Query: 280 LERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQ 339
SGG+R+R+ + + NP +L LDEP S LD + Q +
Sbjct: 98 -----------------SGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIA 140
Query: 340 DIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKG 372
+ AG T + H+P D++++L G
Sbjct: 141 ALKAAGATRIVIAHRPE--TLASADRILVLEDG 171
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 97.9 bits (244), Expect = 2e-22
Identities = 52/189 (27%), Positives = 100/189 (52%), Gaps = 16/189 (8%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY---SK 225
++ L+ ++ G ++ +GP+G+GK+T + +++G L P GS+ K
Sbjct: 14 TQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYL--PPDSGSVQVCGEDVLQNPK 71
Query: 226 SLKSKIGFVTQDDVLFPHLTVKETLTY-AALLRLPNTLTKQQKEKRAIDVINELGLERCQ 284
++ IG++ + + L+ + V+E L + A + + L KQ+ E+ +I +GL Q
Sbjct: 72 EVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEE----MIELVGLRPEQ 127
Query: 285 DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA 344
IG +S G R+RV + +I +P +L LDEPT+GLD + I ++++I +
Sbjct: 128 HKKIGQ-----LSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKD 182
Query: 345 GKTVVTTIH 353
KT++ + H
Sbjct: 183 -KTIILSTH 190
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 96.2 bits (240), Expect = 2e-22
Identities = 67/224 (29%), Positives = 113/224 (50%), Gaps = 30/224 (13%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK---S 229
L+ ++ +V PG +AL+GP+G+GK+TL +LL+ + G I+ H ++ + +
Sbjct: 17 LDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQE--GQISVAGHDLRRAPRAALA 74
Query: 230 KIGFVTQDDVLFPHLTVKETLTY-AALLRLPNTLTKQQKEKRAIDVINELGL-ERCQDTM 287
++G V Q L L+V++ L Y AAL L + + R +++ LGL ER
Sbjct: 75 RLGVVFQQPTLDLDLSVRQNLRYHAALHGLS----RAEARARIAELLARLGLAER----- 125
Query: 288 IGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQD-IAEAGK 346
VR ++GG R+RV I ++ P+LL LDEPT GLD + I ++ + G
Sbjct: 126 -ADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAITAHVRALARDQGL 184
Query: 347 TVVTTIH-----QPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385
+V+ H + D+L++L +G +L G A+E
Sbjct: 185 SVLWATHLVDEIEAD-------DRLVVLHRGRVLADGAAAELRG 221
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 2e-22
Identities = 74/232 (31%), Positives = 122/232 (52%), Gaps = 32/232 (13%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP---YSKS-L 227
+L G++ + GE +AL+G +G GK+TLL LL+ R +P G I N P YS++ L
Sbjct: 355 VLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLT-RAWDPQ-QGEILLNGQPIADYSEAAL 412
Query: 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTM 287
+ I V+Q LF T+++ L AA ++ I+V+ ++GLE+ +
Sbjct: 413 RQAISVVSQRVHLFSA-TLRDNLLLAA---------PNASDEALIEVLQQVGLEKLLEDD 462
Query: 288 IG-----GSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA 342
G G R +SGGE++R+ I ++ + LL LDEPT GLD+ T +I+++L + A
Sbjct: 463 KGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHA 522
Query: 343 EAGKTVVTTIHQPSSRLF--HKFDKLILLGKGSLLYFGKASEAMA----YFS 388
KTV+ H RL +FD++ ++ G ++ G E +A Y+
Sbjct: 523 -QNKTVLMITH----RLTGLEQFDRICVMDNGQIIEQGTHQELLAQQGRYYQ 569
|
Length = 574 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 96.0 bits (239), Expect = 3e-22
Identities = 76/243 (31%), Positives = 121/243 (49%), Gaps = 38/243 (15%)
Query: 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME 209
++F +V+Y SS K+IL I+ G + ++GPSG+GK+TL+ L++ RL++
Sbjct: 4 IEFKEVSY--------SSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLIN-RLID 54
Query: 210 PTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQ 265
PT GSI + L+ KIG V Q LF TVK+ + Y +L
Sbjct: 55 PT-EGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFEG-TVKDNIEYGPML--------- 103
Query: 266 QKEKRAIDV---INELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEP 322
K ++ +DV ++ +GL + T V+ +SGGE +RV I + NP +L LDEP
Sbjct: 104 -KGEKNVDVEYYLSIVGLNKEYAT----RDVKNLSGGEAQRVSIARTLANNPEVLLLDEP 158
Query: 323 TSGLDSTTALRIVQMLQDIAEA-GKTVVTTIH--QPSSRLFHKFDKLILLGKGSLLYFGK 379
TS LD T+ I +++ + TV+ H + + R+ D L KG L+ + K
Sbjct: 159 TSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRI---GDYTAFLNKGILVEYAK 215
Query: 380 ASE 382
+
Sbjct: 216 TYD 218
|
Length = 241 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 95.6 bits (238), Expect = 3e-22
Identities = 70/229 (30%), Positives = 120/229 (52%), Gaps = 18/229 (7%)
Query: 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME 209
+KF +VT+ + + +L ++ +++PGEV AL+GPSGSGK+T++ LL +
Sbjct: 12 VKFQNVTF-----AYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLE-NFYQ 65
Query: 210 PTVGGSITYNDHPYS----KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQ 265
P GG + + P S K L SK+ V Q+ VLF ++++ + Y + +
Sbjct: 66 PQ-GGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFAR-SLQDNIAYGLQSCSFECVKEA 123
Query: 266 QKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSG 325
++ A I+EL + GS +SGG+++RV I +I NP +L LDE TS
Sbjct: 124 AQKAHAHSFISELASGYDTEVGEKGSQ---LSGGQKQRVAIARALIRNPQVLILDEATSA 180
Query: 326 LDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374
LD+ + ++ Q L D E +TV+ H+ S + D++++L G +
Sbjct: 181 LDAESEQQVQQALYDWPER-RTVLVIAHRLS--TVERADQILVLDGGRI 226
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 100 bits (252), Expect = 4e-22
Identities = 74/235 (31%), Positives = 114/235 (48%), Gaps = 34/235 (14%)
Query: 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSI--------TYN 219
+K L GI+ S+ GE LA++GPSGSGK+TL L+ G + P GS+ ++
Sbjct: 329 GKKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVG--IWPPTSGSVRLDGADLKQWD 386
Query: 220 DHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQ-----KEKRAIDV 274
+ K IG++ QD LFP TV E + R ++ K ++
Sbjct: 387 RETFGKH----IGYLPQDVELFPG-TVAENIA-----RFGENADPEKIIEAAKLAGVHEL 436
Query: 275 INELGLERCQDTMIG--GSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTAL 332
I L L DT+IG G+ +SGG+R+R+ + + +P L+ LDEP S LD
Sbjct: 437 I--LRLPDGYDTVIGPGGA---TLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQ 491
Query: 333 RIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYF 387
+ ++ + G TVV H+PS L DK+++L G + FG+ E +A
Sbjct: 492 ALANAIKALKARGITVVVITHRPS--LLGCVDKILVLQDGRIARFGERDEVLAKL 544
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 95.9 bits (239), Expect = 4e-22
Identities = 67/204 (32%), Positives = 106/204 (51%), Gaps = 13/204 (6%)
Query: 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKS 229
K L I ++ GE+L ++GPSG GKTTLLNL++G + GSIT + P
Sbjct: 14 KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAG-FVPYQ-HGSITLDGKPVEGPGAE 71
Query: 230 KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIG 289
+ G V Q++ L P V++ + + L+L + K Q+ + A ++ ++GLE
Sbjct: 72 R-GVVFQNEGLLPWRNVQDNVAFG--LQLAG-VEKMQRLEIAHQMLKKVGLEG-----AE 122
Query: 290 GSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI-AEAGKTV 348
++ +SGG+R+RV I + NP LL LDEP LD+ T ++ +L + E GK V
Sbjct: 123 KRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQV 182
Query: 349 VTTIHQPSSRLFHKFDKLILLGKG 372
+ H +F + L+LL G
Sbjct: 183 LLITHDIEEAVFMATE-LVLLSPG 205
|
Length = 255 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 94.5 bits (235), Expect = 6e-22
Identities = 62/185 (33%), Positives = 100/185 (54%), Gaps = 21/185 (11%)
Query: 179 SVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSK--IGFVTQ 236
+V GE++A+MGPSG+GK+TLLNL++G +EP GSI ND ++ + + + Q
Sbjct: 20 NVADGEIVAIMGPSGAGKSTLLNLIAG-FIEP-ASGSIKVNDQSHTGLAPYQRPVSMLFQ 77
Query: 237 DDVLFPHLTVKETLTYAALLRLPN-TLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRG 295
++ LF HLTV++ + L P L +Q+EK +D ++G+ D +
Sbjct: 78 ENNLFAHLTVRQNI---GLGLHPGLKLNAEQQEK-VVDAAQQVGIADYLDRLPE-----Q 128
Query: 296 VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA----EAGKTVVTT 351
+SGG+R+RV + ++ +L LDEP S LD LR +ML + E +T++
Sbjct: 129 LSGGQRQRVALARCLVRPNPILLLDEPFSALDP--LLR-EEMLALVKQLCSERQRTLLMV 185
Query: 352 IHQPS 356
H S
Sbjct: 186 THHLS 190
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 98.0 bits (244), Expect = 6e-22
Identities = 63/238 (26%), Positives = 113/238 (47%), Gaps = 33/238 (13%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVG-----GSITYNDHP--YSK 225
+N ++ GE+ +MG SGSGK+T + +L+ RL+EPT G G P +
Sbjct: 9 VNDADLAIAKGEIFVIMGLSGSGKSTTVRMLN-RLIEPTAGQIFIDGENIMKQSPVELRE 67
Query: 226 SLKSKIGFVTQDDVLFPHLTVKETLTYA-ALLRLPNTLTKQQKEKRAIDVINELGLERCQ 284
+ KIG V Q LFPH+T+ + + LL P +Q+++++A++++ +GLE +
Sbjct: 68 VRRKKIGMVFQQFALFPHMTILQNTSLGPELLGWP----EQERKEKALELLKLVGLEEYE 123
Query: 285 DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI-AE 343
+ +SGG ++RV + + P +L +DE S LD + L+ + A
Sbjct: 124 H-----RYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQAT 178
Query: 344 AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGCSPQIAMNPA 401
KT+V H + D+++++ G ++ +G +I NPA
Sbjct: 179 LQKTIVFITHDLDEAI-RIGDRIVIMKAGEIV-------------QVGTPDEILRNPA 222
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 94.2 bits (235), Expect = 8e-22
Identities = 64/204 (31%), Positives = 98/204 (48%), Gaps = 24/204 (11%)
Query: 159 VILKGMTSS-EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVG---- 213
V L+ +T L+ + + GE + L+GPSG GKTT L +++G L EPT G
Sbjct: 1 VELENVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAG-LEEPTSGRIYI 59
Query: 214 GSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAID 273
G D P I V Q+ L+PH+TV + + + LR + K + ++R +
Sbjct: 60 GGRDVTDLPPKDR---DIAMVFQNYALYPHMTVYDNIAFGLKLR---KVPKDEIDERVRE 113
Query: 274 VINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALR 333
V L +E D + +SGG+R+RV +G I+ P + +DEP S LD+ LR
Sbjct: 114 VAELLQIEHLLD-----RKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDA--KLR 166
Query: 334 IVQMLQDI----AEAGKTVVTTIH 353
VQM ++ G T + H
Sbjct: 167 -VQMRAELKRLQQRLGTTTIYVTH 189
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 94.1 bits (235), Expect = 8e-22
Identities = 64/229 (27%), Positives = 110/229 (48%), Gaps = 38/229 (16%)
Query: 166 SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLN-LLSGRLMEPTVGGSITYNDHPYS 224
+L I+ S+ PGE + ++G +GSGK++LL L RL+E + GSI + S
Sbjct: 13 RPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALF--RLVELS-SGSILIDGVDIS 69
Query: 225 K----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL 280
K L+S+I + QD VLF T++ L P + ++ + +GL
Sbjct: 70 KIGLHDLRSRISIIPQDPVLFSG-TIRSNLD-------PFG---EYSDEELWQALERVGL 118
Query: 281 -ERCQ------DTMI--GGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTA 331
E + DT++ GG +S G+R+ +C+ ++ +L LDE T+ +D T
Sbjct: 119 KEFVESLPGGLDTVVEEGGEN---LSVGQRQLLCLARALLRKSKILVLDEATASVDPETD 175
Query: 332 LRIVQMLQDIAEAGKTVVTTIHQPSSRL--FHKFDKLILLGKGSLLYFG 378
I + +++ A TV+T H RL D++++L KG ++ F
Sbjct: 176 ALIQKTIRE-AFKDCTVLTIAH----RLDTIIDSDRILVLDKGRVVEFD 219
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 92.8 bits (231), Expect = 9e-22
Identities = 58/210 (27%), Positives = 95/210 (45%), Gaps = 51/210 (24%)
Query: 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP---YS 224
+E+ +L ++ + GE +AL+G SGSGK+TLL LL+G L G IT + P
Sbjct: 13 QEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQ--GEITLDGVPVSDLE 70
Query: 225 KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ 284
K+L S I + Q P+L + LR N LG
Sbjct: 71 KALSSLISVLNQR----PYL-------FDTTLR------------------NNLG----- 96
Query: 285 DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA 344
R SGGER+R+ + ++ + ++ LDEPT GLD T +++ ++ ++ +
Sbjct: 97 ---------RRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLK- 146
Query: 345 GKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374
KT++ H + DK++ L G +
Sbjct: 147 DKTLIWITHHLTG--IEHMDKILFLENGKI 174
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 94.6 bits (236), Expect = 1e-21
Identities = 65/218 (29%), Positives = 95/218 (43%), Gaps = 29/218 (13%)
Query: 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME 209
L+ D+ +V +K+IL G+ +V GEV A+MGP+GSGK+TL + G
Sbjct: 4 LEIKDLHVEV-------EGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKY 56
Query: 210 PTVGGSITYNDH------PYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLT 263
G I ++ P ++ I Q V P +T + L A R
Sbjct: 57 EVTEGEILFDGEDILELSPDERARAG-IFLAFQYPVEIPGVTNSDFLRAAMNARRGARGI 115
Query: 264 KQQKEKRAIDVINELGLERCQDTMIGGSFV-RGV----SGGERKRVCIGNEIIINPSLLF 318
+ K + LGL+ F+ R V SGGE+KR I +++ P L
Sbjct: 116 LPEFIKELKEKAELLGLDE--------EFLERYVNEGFSGGEKKRNEILQLLLLEPKLAI 167
Query: 319 LDEPTSGLDSTTALRIVQM-LQDIAEAGKTVVTTIHQP 355
LDEP SGLD AL+IV + + E G+ V+ H
Sbjct: 168 LDEPDSGLD-IDALKIVAEGINALREEGRGVLIITHYQ 204
|
Length = 251 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 92.9 bits (231), Expect = 2e-21
Identities = 63/203 (31%), Positives = 101/203 (49%), Gaps = 22/203 (10%)
Query: 183 GEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYN--DHPYSKSLKSKIGFVTQDDVL 240
GE+ A++GPSGSGK+TLLNL++G E G + N D + + + Q++ L
Sbjct: 24 GEITAIVGPSGSGKSTLLNLIAG--FETPQSGRVLINGVDVTAAPPADRPVSMLFQENNL 81
Query: 241 FPHLTVKETLTYAALLRLPN-TLTKQQKEKRAIDVINELGLERCQDTMIGGSFVR---GV 296
F HLTV++ + L P LT + ++ AI+V L R + G R +
Sbjct: 82 FAHLTVEQNV---GLGLSPGLKLTAEDRQ--AIEVA----LAR---VGLAGLEKRLPGEL 129
Query: 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI-AEAGKTVVTTIHQP 355
SGGER+RV + ++ + +L LDEP + LD ++ ++ D+ AE TV+ HQP
Sbjct: 130 SGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQP 189
Query: 356 SSRLFHKFDKLILLGKGSLLYFG 378
+++ L G + G
Sbjct: 190 EDAK-RLAQRVVFLDNGRIAAQG 211
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 93.5 bits (233), Expect = 3e-21
Identities = 60/223 (26%), Positives = 113/223 (50%), Gaps = 21/223 (9%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLL---NLLSGRLMEPTVGGSITYNDHP-YS 224
EK+ L I + +V AL+GPSG GK+TLL N ++ + + G + ++ Y
Sbjct: 13 EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYD 72
Query: 225 K-----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG 279
K L+ ++G V Q FP +++ + + Y RL K++ ++ + + +
Sbjct: 73 KKIDVVELRRRVGMVFQKPNPFP-MSIYDNIAYG--PRLHGIKDKKELDEIVEESLKKAA 129
Query: 280 L-ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQML 338
L + +D + + G+SGG+++R+CI + + P +L LDEPTS LD +I +++
Sbjct: 130 LWDEVKDRLHDSAL--GLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELI 187
Query: 339 QDIAEAGKTVVTTIH--QPSSRLFHKFDKLILLGKGSLLYFGK 379
Q++ + T+V H Q ++R+ D+ G L+ +G
Sbjct: 188 QELKKK-YTIVIVTHNMQQAARI---SDRTAFFYDGELVEYGP 226
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 94.5 bits (235), Expect = 4e-21
Identities = 67/233 (28%), Positives = 111/233 (47%), Gaps = 28/233 (12%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP---YSK 225
+K +++G++ V GE L+GP+G+GKTT L +L G L P GSI+ P ++
Sbjct: 19 DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLG-LTHPD-AGSISLCGEPVPSRAR 76
Query: 226 SLKSKIGFVTQDDVLFPHLTVKETLT----YAALLRLPNTLTKQQKEKRAIDVINELGLE 281
+ ++G V Q D L P TV+E L Y L + ++ LE
Sbjct: 77 HARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGL-------SAAAARALVPPLLEFAKLE 129
Query: 282 RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI 341
D V +SGG ++R+ + ++ +P +L LDEPT+GLD + + L+ +
Sbjct: 130 NKADAK-----VGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSL 184
Query: 342 AEAGKTVVTTIH--QPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGC 392
GKT++ T H + + RL +L ++ +G + G + S IGC
Sbjct: 185 LARGKTILLTTHFMEEAERLCD---RLCVIEEGRKIAEGAPHALIE--SEIGC 232
|
Length = 306 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 92.4 bits (230), Expect = 4e-21
Identities = 73/220 (33%), Positives = 109/220 (49%), Gaps = 24/220 (10%)
Query: 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPT-----VGGSITYNDHP 222
E + L GI+ ++ GE++ +GP+G+GKTT L +LSG L++PT V G + +
Sbjct: 32 REVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSG-LLQPTSGEVRVAGLVPWKR-- 88
Query: 223 YSKSLKSKIGFVT-QDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE 281
K +IG V Q L+ L V ++ LL L + +KR ++ L LE
Sbjct: 89 -RKKFLRRIGVVFGQKTQLWWDLPVIDSF---YLLAAIYDLPPARFKKRLDELSELLDLE 144
Query: 282 RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI 341
DT VR +S G+R R I ++ P +LFLDEPT GLD I L++
Sbjct: 145 ELLDTP-----VRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEY 199
Query: 342 -AEAGKTVVTTIH--QPSSRLFHKFDKLILLGKGSLLYFG 378
E G TV+ T H + L +++++ KG LLY G
Sbjct: 200 NRERGTTVLLTSHYMKDIEAL---ARRVLVIDKGRLLYDG 236
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 92.2 bits (229), Expect = 5e-21
Identities = 59/208 (28%), Positives = 100/208 (48%), Gaps = 18/208 (8%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS----KSL 227
ILN I+ SV GE +A+ GPSG GK+TLL +++ L+ PT G++ + S ++
Sbjct: 18 ILNNISLSVRAGEFIAITGPSGCGKSTLLKIVAS-LISPTS-GTLLFEGEDVSTLKPEAY 75
Query: 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTM 287
+ ++ + Q LF TV++ L + +R ++ A+D++ L
Sbjct: 76 RQQVSYCAQTPALFGD-TVEDNLIFPWQIR-----NRRPDRAAALDLLARFAL----PDS 125
Query: 288 IGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQD-IAEAGK 346
I + +SGGE++R+ + + P +L LDE TS LD + I +M+ + E
Sbjct: 126 ILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQNV 185
Query: 347 TVVTTIHQPSSRLFHKFDKLILLGKGSL 374
V+ H + H DK+I L G
Sbjct: 186 AVLWITHDKDQAIRH-ADKVITLQPGHA 212
|
Length = 223 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 97.1 bits (242), Expect = 5e-21
Identities = 59/184 (32%), Positives = 94/184 (51%), Gaps = 25/184 (13%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTT----LLNLLSGRLMEPTVGGSITYNDHPYS 224
++ I+ ++ PGE L L+G SGSGK+T LL L++ + G I ++ P
Sbjct: 298 HNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLINSQ-------GEIWFDGQPLH 350
Query: 225 K-------SLKSKIGFVTQD--DVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVI 275
++ +I V QD L P L V + + + P TL+ Q+E++ I V+
Sbjct: 351 NLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQP-TLSAAQREQQVIAVM 409
Query: 276 NELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIV 335
E+GL+ F SGG+R+R+ I +I+ PSL+ LDEPTS LD T +I+
Sbjct: 410 EEVGLDPETRHRYPAEF----SGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQIL 465
Query: 336 QMLQ 339
+L+
Sbjct: 466 ALLK 469
|
Length = 529 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 92.1 bits (229), Expect = 5e-21
Identities = 65/193 (33%), Positives = 94/193 (48%), Gaps = 19/193 (9%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLL-------SGRLMEPTVGGSITYNDHPYS 224
IL G+ V GE +AL+G SGSGK+TLL +L SG + VG + D
Sbjct: 25 ILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVS--LVGQPLHQMDEEAR 82
Query: 225 KSLKSK-IGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC 283
L++K +GFV Q +L P L E + ALLR + +Q A ++ +LGL +
Sbjct: 83 AKLRAKHVGFVFQSFMLIPTLNALENVELPALLRGES---SRQSRNGAKALLEQLGLGKR 139
Query: 284 QDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI-A 342
D + +SGGE++RV + P +LF DEPT LD T +I +L +
Sbjct: 140 LDHLPA-----QLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNR 194
Query: 343 EAGKTVVTTIHQP 355
E G T++ H
Sbjct: 195 EHGTTLILVTHDL 207
|
Length = 228 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 91.0 bits (227), Expect = 6e-21
Identities = 60/212 (28%), Positives = 87/212 (41%), Gaps = 58/212 (27%)
Query: 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME 209
L+ D+ V K+IL G+ ++ GEV ALMGP+GSGK+TL + G +
Sbjct: 1 LEIKDLHVSV--------GGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGH-PK 51
Query: 210 PTV-GGSITYNDH------PYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTL 262
V G I + P ++ I Q P + + L Y
Sbjct: 52 YEVTEGEILFKGEDITDLPPEERARLG-IFLAFQYPPEIPGVKNADFLRY---------- 100
Query: 263 TKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEP 322
+NE G SGGE+KR I +++ P L LDEP
Sbjct: 101 ------------VNE-----------------GFSGGEKKRNEILQLLLLEPDLAILDEP 131
Query: 323 TSGLDSTTALRIV-QMLQDIAEAGKTVVTTIH 353
SGLD ALR+V +++ + E GK+V+ H
Sbjct: 132 DSGLD-IDALRLVAEVINKLREEGKSVLIITH 162
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 96.4 bits (241), Expect = 6e-21
Identities = 53/183 (28%), Positives = 94/183 (51%), Gaps = 13/183 (7%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS-----KSL 227
L+G++ +V PGEV AL+G +G+GK+TL+ +LSG + P G I + P + +L
Sbjct: 24 LDGVSLTVRPGEVHALLGENGAGKSTLMKILSG-VYPPD-SGEILIDGKPVAFSSPRDAL 81
Query: 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQK-EKRAIDVINELGLERCQDT 286
+ I V Q+ L P+L+V E + L ++ +RA +++ LGL+ DT
Sbjct: 82 AAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDT 141
Query: 287 MIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGK 346
+ V +S +R+ V I + + +L LDEPT+ L R+ +++ + G
Sbjct: 142 L-----VGDLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGV 196
Query: 347 TVV 349
++
Sbjct: 197 AII 199
|
Length = 500 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 92.1 bits (230), Expect = 9e-21
Identities = 63/237 (26%), Positives = 112/237 (47%), Gaps = 44/237 (18%)
Query: 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS----K 225
+ +L+ ++ ++ PGEV+A++GP+G+GK+TLL LSG L G + N P +
Sbjct: 15 RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGEL--SPDSGEVRLNGRPLADWSPA 72
Query: 226 SLKSKIGFVTQDDVL-FPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ 284
L + + Q L FP TV+E + A+ R P+ L++ + + + ++ L
Sbjct: 73 ELARRRAVLPQHSSLSFP-FTVEEVV---AMGRAPHGLSRAEDDALVAAALAQVDL---- 124
Query: 285 DTMIGGSFVRGVSGGERKRV----------CIGNEIIINPSLLFLDEPTSGLDSTTALRI 334
+ G +SGGE++RV P L LDEPTS LD +
Sbjct: 125 -AHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGP----PRWLLLDEPTSALDLAHQHHV 179
Query: 335 VQMLQDIA-EAGKTVVTTIH------QPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384
+++ + +A E G V+ +H + + D+++LL +G L+ G +E +
Sbjct: 180 LRLARQLAHERGLAVIVVLHDLNLAARYA-------DRIVLLHQGRLVADGTPAEVL 229
|
Length = 258 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 92.1 bits (229), Expect = 9e-21
Identities = 56/199 (28%), Positives = 107/199 (53%), Gaps = 22/199 (11%)
Query: 171 DILNGITGSVNPGEVLALMGPSGSGKTTLL---NLL----SGRL--------MEPTVGGS 215
++L G++ N G+V++++G SGSGK+T L N L +G + ++ G
Sbjct: 20 EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQ 79
Query: 216 ITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVI 275
+ D + L++++G V Q L+ H+TV E + A + L ++K + +RA +
Sbjct: 80 LKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVL--GVSKAEAIERAEKYL 137
Query: 276 NELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIV 335
++G+ D ++ +SGG+++RV I + + P ++ DEPTS LD ++
Sbjct: 138 AKVGIAEKAD-----AYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVL 192
Query: 336 QMLQDIAEAGKTVVTTIHQ 354
+++QD+AE G+T+V H+
Sbjct: 193 KVMQDLAEEGRTMVVVTHE 211
|
Length = 256 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 92.0 bits (229), Expect = 1e-20
Identities = 61/224 (27%), Positives = 116/224 (51%), Gaps = 19/224 (8%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---- 224
K ILN ++ S+ G++ AL+GP+G GK+TLL + RL+ P G++ D P S
Sbjct: 14 TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFA-RLLTPQ-SGTVFLGDKPISMLSS 71
Query: 225 KSLKSKIGFVTQDDVLFPHLTVKETLTY--AALLRLPNTLTKQQKEKRAIDVINELGLER 282
+ L ++ + Q + +TV+E + Y + L L L+ ++ ++ +E+
Sbjct: 72 RQLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLS--AEDNARVNQ----AMEQ 125
Query: 283 CQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA 342
+ + + +SGG+R+R + + + ++ LDEPT+ LD + ++++++++
Sbjct: 126 TRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELN 185
Query: 343 EAGKTVVTTIH--QPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384
GKTVVT +H +SR D L++L G ++ G E M
Sbjct: 186 TQGKTVVTVLHDLNQASRY---CDHLVVLANGHVMAQGTPEEVM 226
|
Length = 255 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 90.6 bits (225), Expect = 2e-20
Identities = 69/214 (32%), Positives = 103/214 (48%), Gaps = 17/214 (7%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYN---DHPYSKSLKS 229
L G+ ++ GE ++L+G SG GK+TLLNL+SG L +PT GG I P +
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISG-LAQPTSGGVILEGKQITEPGPDRM-- 57
Query: 230 KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIG 289
V Q+ L P LTV+E + A+ R+ L+K ++ + I +GL D G
Sbjct: 58 ---VVFQNYSLLPWLTVRENI-ALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPG 113
Query: 290 GSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA-EAGKTV 348
+SGG ++RV I + I P +L LDEP LD+ T + + L I E TV
Sbjct: 114 -----QLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTV 168
Query: 349 VTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382
+ H L D++++L G G+ E
Sbjct: 169 LMVTHDVDEALLLS-DRVVMLTNGPAANIGQILE 201
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 91.1 bits (227), Expect = 2e-20
Identities = 52/194 (26%), Positives = 92/194 (47%), Gaps = 34/194 (17%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLL---NLLSGRLMEPTVGGSITYNDHP-YS 224
+K L I + +V AL+GPSG GK+TLL N ++ + V G + + Y
Sbjct: 19 DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYD 78
Query: 225 KS-----LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG 279
L+ ++G V Q FP +++ + + Y LRL + + +D I E
Sbjct: 79 PKVDVVELRRRVGMVFQKPNPFP-MSIYDNVAYG--LRL------HGIKDKELDEIVESS 129
Query: 280 L----------ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDST 329
L +R + G+SGG+++R+CI + + P +L +DEPTS LD
Sbjct: 130 LKKAALWDEVKDRLHKS------ALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPI 183
Query: 330 TALRIVQMLQDIAE 343
+ L+I +++ ++ +
Sbjct: 184 STLKIEELITELKK 197
|
Length = 253 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 90.7 bits (226), Expect = 2e-20
Identities = 58/190 (30%), Positives = 96/190 (50%), Gaps = 18/190 (9%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK------- 225
L ++ SV GE+ ++G SG+GK+TL+ ++G L PT GS+ + +
Sbjct: 21 LKDVSLSVPKGEIFGIIGRSGAGKSTLIRCING-LERPT-SGSVLVDGTDLTLLSGKELR 78
Query: 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQD 285
+ +IG + Q L TV E + L + K + E+R ++++ +GLE D
Sbjct: 79 KARRRIGMIFQHFNLLSSRTVFENVALP--LEIAGV-PKAEIEERVLELLELVGLEDKAD 135
Query: 286 TMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI-AEA 344
++ +SGG+++RV I + NP +L DE TS LD T I+ +L+DI E
Sbjct: 136 -----AYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINREL 190
Query: 345 GKTVVTTIHQ 354
G T+V H+
Sbjct: 191 GLTIVLITHE 200
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 95.0 bits (237), Expect = 2e-20
Identities = 63/195 (32%), Positives = 104/195 (53%), Gaps = 13/195 (6%)
Query: 179 SVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS----KSLKSKIGFV 234
+V PGE +AL+GPSG+GK+TLLNLL G ++PT GSI N P + S + +I +V
Sbjct: 344 TVPPGERVALVGPSGAGKSTLLNLLLG-FVDPT-EGSIAVNGVPLADADADSWRDQIAWV 401
Query: 235 TQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVR 294
Q LF T+ E + A + + + + + L DT IG
Sbjct: 402 PQHPFLFAG-TIAENIRLARPDASDAEIREALERAGLDEFVAALPQG--LDTPIGEG-GA 457
Query: 295 GVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQ 354
G+SGG+ +R+ + + + LL LDEPT+ LD+ T +++ L+ +A+ G+TV+ H+
Sbjct: 458 GLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLEALRALAQ-GRTVLLVTHR 516
Query: 355 PSSRLFHKFDKLILL 369
+ D++++L
Sbjct: 517 LALA--ALADRIVVL 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 93.6 bits (233), Expect = 2e-20
Identities = 61/194 (31%), Positives = 96/194 (49%), Gaps = 27/194 (13%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDH---PYSKS--- 226
+N + V GE+ +MG SGSGK+TL+ LL+ RL+EPT G I + S +
Sbjct: 44 VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLN-RLIEPT-RGEILVDGKDIAKLSAAELR 101
Query: 227 --LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ 284
+ KI V Q L PH TV E + + ++ + K ++E+RA++ + +GLE
Sbjct: 102 ELRRKKISMVFQSFALLPHRTVLENVAFGLEVQ---GVPKAEREERALEALELVGLEGYA 158
Query: 285 DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI--- 341
D + +SGG ++RV + + +P +L +DE S LD I +QD
Sbjct: 159 D-----KYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPL----IRTEMQDELLE 209
Query: 342 --AEAGKTVVTTIH 353
A+ KT+V H
Sbjct: 210 LQAKLKKTIVFITH 223
|
Length = 386 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 93.1 bits (231), Expect = 3e-20
Identities = 60/215 (27%), Positives = 95/215 (44%), Gaps = 21/215 (9%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDH------PYSK 225
+L+ ++ + GE+LAL+G SG GKTTLL ++G + + G I D P+ +
Sbjct: 20 VLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKR 79
Query: 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQD 285
L + Q+ LFPHL V++ + + + K K A V + L L D
Sbjct: 80 GL----ALLFQNYALFPHLKVEDNVAFGLRAQ------KMPKADIAERVADALKLVGLGD 129
Query: 286 TMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-- 343
+SGG ++R+ I I I P +L LDEP S LD+ + + + + E
Sbjct: 130 A--AAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEEL 187
Query: 344 AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378
T++ H L DK ++ G L G
Sbjct: 188 PELTILCVTHDQDDALTLA-DKAGIMKDGRLAAHG 221
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 90.0 bits (224), Expect = 3e-20
Identities = 56/168 (33%), Positives = 91/168 (54%), Gaps = 18/168 (10%)
Query: 179 SVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYN--DHPYSKSLKSKIGFVTQ 236
+V GE +A++GPSG+GK+TLLNL++G L GS+T N DH + + + + Q
Sbjct: 21 TVERGERVAILGPSGAGKSTLLNLIAGFL--TPASGSLTLNGQDHTTTPPSRRPVSMLFQ 78
Query: 237 DDVLFPHLTVKETLTYAALLRLPN-TLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRG 295
++ LF HLTV + + L P L Q+EK + ++G+E + G
Sbjct: 79 ENNLFSHLTVAQNI---GLGLNPGLKLNAAQREKLH-AIARQMGIEDLLARLPG-----Q 129
Query: 296 VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALR--IVQMLQDI 341
+SGG+R+RV + ++ +L LDEP S LD ALR ++ ++ +
Sbjct: 130 LSGGQRQRVALARCLVREQPILLLDEPFSALDP--ALRQEMLTLVSQV 175
|
Length = 232 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 94.7 bits (236), Expect = 3e-20
Identities = 64/190 (33%), Positives = 100/190 (52%), Gaps = 15/190 (7%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SL 227
+L+G++ + PGE +A++GPSGSGK+TLL L+G L + G +T + P S +
Sbjct: 350 VLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLL--DPLQGEVTLDGVPVSSLDQDEV 407
Query: 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL--GLERCQD 285
+ ++ QD LF TV+E L A L + D + L GL D
Sbjct: 408 RRRVSVCAQDAHLF-DTTVRENLRLARPDATDEELWAALERVGLADWLRALPDGL----D 462
Query: 286 TMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAG 345
T++G R +SGGER+R+ + ++ + +L LDEPT LD+ TA +++ L A +G
Sbjct: 463 TVLGEGGAR-LSGGERQRLALARALLADAPILLLDEPTEHLDAETADELLEDLLA-ALSG 520
Query: 346 KTVVTTIHQP 355
+TVV H
Sbjct: 521 RTVVLITHHL 530
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 90.0 bits (224), Expect = 5e-20
Identities = 45/172 (26%), Positives = 80/172 (46%), Gaps = 42/172 (24%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKI 231
++G++ S+ GE L L+G SG GK+TL L+ L EPT G I + +K
Sbjct: 28 AVDGVSFSIKEGETLGLVGESGCGKSTLGRLIL-GLEEPT-SGEILFEGKDITK------ 79
Query: 232 GFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGS 291
L+K+++ +R ++++ ++GL
Sbjct: 80 ------------------------------LSKEERRERVLELLEKVGL----PEEFLYR 105
Query: 292 FVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE 343
+ +SGG+R+R+ I + +NP L+ DEP S LD + +I+ +L+D+ E
Sbjct: 106 YPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQE 157
|
Length = 268 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 89.3 bits (222), Expect = 6e-20
Identities = 64/219 (29%), Positives = 107/219 (48%), Gaps = 22/219 (10%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SLKSK 230
L+ ++ + GE++AL+GPSGSGKTTLL L++G +E G+I + + +
Sbjct: 18 LDDVSLDIPSGELVALLGPSGSGKTTLLRLIAG--LERPDSGTILFGGEDATDVPVQERN 75
Query: 231 IGFVTQDDVLFPHLTVKETLTYAALLR----LPNTLTKQQKEKRAIDVINELGLERCQDT 286
+GFV Q LF H+TV + + + ++ P + K ++EL L+ Q
Sbjct: 76 VGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAK-------VHEL-LKLVQLD 127
Query: 287 MIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTT--ALR-IVQMLQDIAE 343
+ + +SGG+R+RV + + + P +L LDEP LD+ LR ++ L D E
Sbjct: 128 WLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHD--E 185
Query: 344 AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382
T V H L D+++++ KG + G E
Sbjct: 186 LHVTTVFVTHDQEEAL-EVADRVVVMNKGRIEQVGTPDE 223
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 89.0 bits (221), Expect = 6e-20
Identities = 58/186 (31%), Positives = 102/186 (54%), Gaps = 16/186 (8%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228
++ +N I+ +V V L+GP+G+GK+TLL +++G ++ PT G I ++ HP+++
Sbjct: 12 KQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITG-ILRPT-SGEIIFDGHPWTRKDL 69
Query: 229 SKIGFVTQDDVLFPHLTVKETL-TYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTM 287
KIG + + L+ +LT +E L + LL LP + R +V+N + L T
Sbjct: 70 HKIGSLIESPPLYENLTARENLKVHTTLLGLP--------DSRIDEVLNIVDL-----TN 116
Query: 288 IGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKT 347
G + S G ++R+ I ++ +P LL LDEPT+GLD + ++++ E G T
Sbjct: 117 TGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGIT 176
Query: 348 VVTTIH 353
V+ + H
Sbjct: 177 VILSSH 182
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 91.9 bits (229), Expect = 7e-20
Identities = 52/170 (30%), Positives = 87/170 (51%), Gaps = 13/170 (7%)
Query: 161 LKGMTSS-EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYN 219
L+G++ S + K++++ + ++N GE L L+GPSG GKTT+L L++G P G I +
Sbjct: 17 LRGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAG-FETPD-SGRIMLD 74
Query: 220 DHPYSK--SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINE 277
+ + + V Q LFPH+TV E + + LR+ T + R ++ +
Sbjct: 75 GQDITHVPAENRHVNTVFQSYALFPHMTVFENVAFG--LRMQKT-PAAEITPRVMEALRM 131
Query: 278 LGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLD 327
+ LE +SGG+++RV I ++ P +L LDE S LD
Sbjct: 132 VQLEE-----FAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALD 176
|
Length = 375 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 89.3 bits (222), Expect = 8e-20
Identities = 63/226 (27%), Positives = 117/226 (51%), Gaps = 24/226 (10%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY----S 224
K +L+ ++ + G + +++GP+G+GK+TLL+++S RL++ G IT + S
Sbjct: 13 TKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMS-RLLKKD-SGEITIDGLELTSTPS 70
Query: 225 KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAI--DVINELGLER 282
K L K+ + Q++ + LTV++ + + R P + + KE R I + I L LE
Sbjct: 71 KELAKKLSILKQENHINSRLTVRDLVGFG---RFPYSQGRLTKEDRRIINEAIEYLHLED 127
Query: 283 CQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA 342
D ++ +SGG+R+R I + + + LDEP + LD +++I+++L+ +A
Sbjct: 128 LSD-----RYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLA 182
Query: 343 -EAGKTVVTTIH---QPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384
E GKT+V +H S D ++ L G ++ G E +
Sbjct: 183 DELGKTIVVVLHDINFASCYS----DHIVALKNGKVVKQGSPDEII 224
|
Length = 252 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 93.1 bits (232), Expect = 1e-19
Identities = 55/179 (30%), Positives = 97/179 (54%), Gaps = 19/179 (10%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTL-LNLLSGRLMEPTVGGSITYNDHPYS------- 224
++GI+ ++ G+ L L+G SGSGK+TL L LL RL+ G I ++
Sbjct: 303 VDGISLTLRRGQTLGLVGESGSGKSTLGLALL--RLIPSQ--GEIRFDGQDIDGLSRKEM 358
Query: 225 KSLKSKIGFVTQD--DVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER 282
+ L+ ++ V QD L P +TV + + + P L+ ++++R I+ + E+GL+
Sbjct: 359 RPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEP-KLSAAERDQRVIEALEEVGLD- 416
Query: 283 CQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI 341
T + SGG+R+R+ I +I+ P L+ LDEPTS LD + +++ +L+D+
Sbjct: 417 -PATR--NRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDL 472
|
Length = 534 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 93.1 bits (232), Expect = 1e-19
Identities = 70/222 (31%), Positives = 107/222 (48%), Gaps = 12/222 (5%)
Query: 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225
++K IL GI+ ++ GE L ++GPSGSGK+TL LL G P GS+ + +
Sbjct: 347 QKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIW--PPTSGSVRLDGADLRQWD 404
Query: 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC 283
L IG++ QD LF T+ E + P + + + ++I L L +
Sbjct: 405 REQLGRHIGYLPQDVELFDG-TIAENIARFGEEADPEKVIEAARLAGVHELI--LRLPQG 461
Query: 284 QDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE 343
DT IG +SGG+R+R+ + + +P L+ LDEP S LDS + +
Sbjct: 462 YDTRIGEGG-ATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKA 520
Query: 344 AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385
G TVV H+PS DK+++L G + FG E +A
Sbjct: 521 RGGTVVVIAHRPS--ALASVDKILVLQDGRIAAFGPREEVLA 560
|
Length = 580 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 90.3 bits (225), Expect = 2e-19
Identities = 64/224 (28%), Positives = 99/224 (44%), Gaps = 38/224 (16%)
Query: 174 NGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL------ 227
GIT A+ G SG+GKT+L+N +SG L P G I N +
Sbjct: 24 QGIT---------AIFGRSGAGKTSLINAISG-LTRPQKG-RIVLNGRVLFDAEKGICLP 72
Query: 228 --KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQD 285
K +IG+V QD LFPH V+ L Y + K + ++ LG+E D
Sbjct: 73 PEKRRIGYVFQDARLFPHYKVRGNLRYG--------MAKSMVAQFD-KIVALLGIEPLLD 123
Query: 286 TMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAG 345
+ +SGGE++RV IG ++ P LL +DEP + LD ++ L+ +A
Sbjct: 124 -----RYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREI 178
Query: 346 KTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK-----ASEAM 384
+ + + D++++L +G + FG AS AM
Sbjct: 179 NIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWASSAM 222
|
Length = 352 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 87.7 bits (218), Expect = 3e-19
Identities = 72/240 (30%), Positives = 108/240 (45%), Gaps = 42/240 (17%)
Query: 166 SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDH---- 221
S E+K+IL G+ +V GE+ A+MGP+GSGK+TL ++G G+I +
Sbjct: 9 SVEDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLE 68
Query: 222 --PYSKSLKSK-IGFVTQDDVLFPHLTVKETLTYAA----------LLRLPNTLTKQQKE 268
P ++ + F Q P ++ E L A L L + L K K
Sbjct: 69 LEPDERARAGLFLAF--QYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFL-KLLKA 125
Query: 269 KRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEI----IINPSLLFLDEPTS 324
K A+ ++E L R S G SGGE+KR NEI ++ P L LDE S
Sbjct: 126 KLALLGMDEEFLNR--------SVNEGFSGGEKKR----NEILQMALLEPKLAILDEIDS 173
Query: 325 GLDSTTALRIV-QMLQDIAEAGKTVVTTIHQPSSRLFH--KFDKLILLGKGSLLYFGKAS 381
GLD AL+IV + + + E ++ + H RL + K D + +L G ++ G
Sbjct: 174 GLD-IDALKIVAEGINRLREPDRSFLIITHYQ--RLLNYIKPDYVHVLLDGRIVKSGDVE 230
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 91.7 bits (228), Expect = 4e-19
Identities = 62/204 (30%), Positives = 106/204 (51%), Gaps = 17/204 (8%)
Query: 160 ILKGMTSSEEK-DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPT-----VG 213
I + S EE+ ++L GI+ + GE++A++G SGSGK+TL+N+L G L +PT V
Sbjct: 10 IRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNIL-GCLDKPTSGTYRVA 68
Query: 214 GS--ITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRA 271
G T + ++ + GF+ Q L HLT + + A+ L ++Q+ RA
Sbjct: 69 GQDVATLDADALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYA---GLERKQRLLRA 125
Query: 272 IDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTA 331
+++ LGLE + +SGG+++RV I ++ ++ DEPT LDS +
Sbjct: 126 QELLQRLGLEDRVEYQPS-----QLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSG 180
Query: 332 LRIVQMLQDIAEAGKTVVTTIHQP 355
++ +L + + G TV+ H P
Sbjct: 181 EEVMAILHQLRDRGHTVIIVTHDP 204
|
Length = 648 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 86.4 bits (215), Expect = 5e-19
Identities = 63/219 (28%), Positives = 103/219 (47%), Gaps = 23/219 (10%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS----- 226
IL G++ V GEV ++G +G GKTTLL L G L P GSI + +K
Sbjct: 15 ILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLL--PVKSGSIRLDGEDITKLPPHER 72
Query: 227 LKSKIGFVTQDDVLFPHLTVKETL-TYAALLRLPNTLTKQQKEKRAIDVINEL--GLERC 283
++ I +V Q +FP LTV+E L T A L ++ ++ D I EL L+
Sbjct: 73 ARAGIAYVPQGREIFPRLTVEENLLTGLAALP--------RRSRKIPDEIYELFPVLKEM 124
Query: 284 QDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE 343
GG +SGG+++++ I ++ P LL LDEPT G+ + I ++++ +
Sbjct: 125 LGRR-GGD----LSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRA 179
Query: 344 AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382
G + + Q D+ ++ +G ++ G E
Sbjct: 180 EGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDE 218
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 88.3 bits (219), Expect = 7e-19
Identities = 71/241 (29%), Positives = 118/241 (48%), Gaps = 25/241 (10%)
Query: 161 LKGMTSS-EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYN 219
L G++ S +K ++NG++ +V GE L+GP+G+GK+T+ ++ G M G IT
Sbjct: 44 LAGVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILG--MTSPDAGKITVL 101
Query: 220 DHPY---SKSLKSKIGFVTQDDVLFPHLTVKETL-TYAALLRLPNTLTKQQKEKRAIDVI 275
P ++ +++IG V Q D L TV+E L + + ++ + I +
Sbjct: 102 GVPVPARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGM-----STREIEAVIPSL 156
Query: 276 NELG-LERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRI 334
E LE D V +SGG ++R+ + +I +P LL LDEPT+GLD I
Sbjct: 157 LEFARLESKADAR-----VSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLI 211
Query: 335 VQMLQDIAEAGKTVVTTIH--QPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGC 392
+ L+ + GKT++ T H + + RL D+L +L G + G+ + IGC
Sbjct: 212 WERLRSLLARGKTILLTTHFMEEAERL---CDRLCVLEAGRKIAEGRPHALID--EHIGC 266
Query: 393 S 393
Sbjct: 267 Q 267
|
Length = 340 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 89.0 bits (221), Expect = 2e-18
Identities = 77/230 (33%), Positives = 119/230 (51%), Gaps = 31/230 (13%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDH----PYS 224
+ ILNGI+ ++ G+ +A++G SG+GK+T+L LL R + GSIT +
Sbjct: 275 RRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLF-RFYDVN-SGSITIDGQDIRDVTQ 332
Query: 225 KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRA-----IDVINEL- 278
+SL+ IG V QD VLF + T+ + Y T ++ A D I L
Sbjct: 333 QSLRRAIGIVPQDTVLF-NDTIAYNIKYGR-----PDATAEEVGAAAEAAQIHDFIQSLP 386
Query: 279 -GLERCQDTMIGGSFVRG--VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIV 335
G DT +G RG +SGGE++RV I I+ NP +L LDE TS LD+ T I
Sbjct: 387 EGY----DTGVG---ERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQ 439
Query: 336 QMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385
L++++ AG+T + H+ S+ + D++I+L G ++ G E +A
Sbjct: 440 AALREVS-AGRTTLVIAHRLSTII--DADEIIVLDNGRIVERGTHEELLA 486
|
Length = 497 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 82.9 bits (206), Expect = 2e-18
Identities = 44/188 (23%), Positives = 81/188 (43%), Gaps = 50/188 (26%)
Query: 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY-----S 224
K + ++ V GE++ + G G+G+T L L G + P G IT + P
Sbjct: 13 KGAVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFG--LRPPASGEITLDGKPVTRRSPR 70
Query: 225 KSLKSKIGFVTQD---DVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE 281
++++ I +V +D + L L+V E + ++LL
Sbjct: 71 DAIRAGIAYVPEDRKREGLVLDLSVAENIALSSLL------------------------- 105
Query: 282 RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI 341
SGG +++V + + +P +L LDEPT G+D I ++++++
Sbjct: 106 ---------------SGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIREL 150
Query: 342 AEAGKTVV 349
A+AGK V+
Sbjct: 151 ADAGKAVL 158
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 87.1 bits (216), Expect = 3e-18
Identities = 54/160 (33%), Positives = 90/160 (56%), Gaps = 10/160 (6%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SLKS 229
+LN I+ + G+++AL+GPSGSGKTTLL +++G +E G I ++ S+ +
Sbjct: 17 VLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAG--LEHQTSGHIRFHGTDVSRLHARDR 74
Query: 230 KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDV-INELGLERCQDTMI 288
K+GFV Q LF H+TV + + + L LP +++ AI + +L LE Q +
Sbjct: 75 KVGFVFQHYALFRHMTVFDNIAF-GLTVLPR---RERPNAAAIKAKVTQL-LEMVQLAHL 129
Query: 289 GGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDS 328
+ +SGG+++RV + + + P +L LDEP LD+
Sbjct: 130 ADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDA 169
|
Length = 353 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 89.2 bits (222), Expect = 3e-18
Identities = 70/242 (28%), Positives = 108/242 (44%), Gaps = 57/242 (23%)
Query: 124 DDI---PEDIEAGTRERPKFQTEPT--LPIYLKFTDVTYKVILKGMTSSEEKDILNGITG 178
DD+ P D E P +EP+ L Y++ ++T+ S E ++ +
Sbjct: 447 DDVLRNPVDPLLEEEEAPAAGSEPSPRLSGYVELRNITFGY------SPLEPPLIENFSL 500
Query: 179 SVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP---YSKS-LKSKIGFV 234
++ PG+ +AL+G SGSGK+T+ L++G L +P G I ++ P + L + + V
Sbjct: 501 TLQPGQRVALVGGSGSGKSTIAKLVAG-LYQPW-SGEILFDGIPREEIPREVLANSVAMV 558
Query: 235 TQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-CQDTMI----- 288
QD LF TV++ LT L + I + L R C+D I
Sbjct: 559 DQDIFLFEG-TVRDNLT------LWD------------PTIPDADLVRACKDAAIHDVIT 599
Query: 289 ------------GGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQ 336
GG +SGG+R+R+ I ++ NPS+L LDE TS LD T I
Sbjct: 600 SRPGGYDAELAEGG---ANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDD 656
Query: 337 ML 338
L
Sbjct: 657 NL 658
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 86.6 bits (215), Expect = 3e-18
Identities = 56/184 (30%), Positives = 87/184 (47%), Gaps = 16/184 (8%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SLKS 229
L I+ SV GE + L+GPSG GKTTLL +++G L T G+I ++ K
Sbjct: 19 ALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAG-LERQT-AGTIYQGGRDITRLPPQKR 76
Query: 230 KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDV-INELGLERCQDTMI 288
G V Q LFP+LTV + + Y L + + + + EL L+
Sbjct: 77 DYGIVFQSYALFPNLTVADNIAYG--------LKNRGMGRAEVAERVAEL-LDLVGLPGS 127
Query: 289 GGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTV 348
+ +SGG+++RV + + +P LL LDEP S LD+ + ++ + +
Sbjct: 128 ERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQR--RLG 185
Query: 349 VTTI 352
VTTI
Sbjct: 186 VTTI 189
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 81.9 bits (203), Expect = 4e-18
Identities = 33/82 (40%), Positives = 54/82 (65%), Gaps = 1/82 (1%)
Query: 291 SFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVT 350
+V +SGG+R+RV + +++NP LL LDEPTSGLD + R++++L+++AE G+TV+
Sbjct: 76 GYVPQLSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVII 135
Query: 351 TIHQPSSRLFHKFDKLILLGKG 372
H P D++I+L G
Sbjct: 136 VTHDPEL-AELAADRVIVLKDG 156
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 87.6 bits (218), Expect = 5e-18
Identities = 46/181 (25%), Positives = 88/181 (48%), Gaps = 16/181 (8%)
Query: 179 SVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY-----SKSLKSKIGF 233
+V GE+L + G G+G+T L L G P G I + P ++K+ I +
Sbjct: 281 TVRAGEILGIAGLVGAGRTELARALFG--ARPASSGEILLDGKPVRIRSPRDAIKAGIAY 338
Query: 234 VTQD---DVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAI--DVINELGLERCQDTMI 288
V +D + L +++ E +T A+L R ++++RA+ I L + +
Sbjct: 339 VPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRI-KTPSP-- 395
Query: 289 GGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTV 348
+ +SGG +++V + + +P +L LDEPT G+D I ++++++A GK +
Sbjct: 396 -EQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAI 454
Query: 349 V 349
+
Sbjct: 455 L 455
|
Length = 500 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 83.7 bits (207), Expect = 6e-18
Identities = 69/235 (29%), Positives = 112/235 (47%), Gaps = 39/235 (16%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLL---NLLSGRLMEPTVGGSITYNDHPYSK 225
EK L IT S+ V AL+GPSG GK+TLL N ++ + + G I YN
Sbjct: 18 EKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMD 77
Query: 226 S------LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG 279
S L+ KIG V Q FP ++ E + Y + +K K+ +D I E
Sbjct: 78 SGADVVALRRKIGMVFQRPNPFPK-SIYENVAYGPRIH-------GEKNKKTLDTIVEKS 129
Query: 280 L----------ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDST 329
L +R D+ + +SGG+++R+CI + +NP ++ +DEP S LD
Sbjct: 130 LKGAALWDEVKDRLHDSALS------LSGGQQQRLCIARTLAVNPEVILMDEPCSALDPI 183
Query: 330 TALRIVQMLQDIAEAGKTVVTTIH--QPSSRLFHKFDKLILLGKGSLLYFGKASE 382
+I +++D+ + TV+ H Q ++R+ + + LGK L+ F K ++
Sbjct: 184 ATAKIEDLIEDLKKE-YTVIIVTHNMQQAARV-SDYTGFMYLGK--LIEFDKTTQ 234
|
Length = 253 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 85.2 bits (211), Expect = 7e-18
Identities = 60/201 (29%), Positives = 93/201 (46%), Gaps = 20/201 (9%)
Query: 188 LMGPSGSGKTTLLNLLSGRLMEPTVG-----GSITYNDHPYSKSLKSKIGFVTQDDVLFP 242
L+GPSG GKTTLL LL+G +P G G N P+ + I V Q LFP
Sbjct: 1 LLGPSGCGKTTLLRLLAG-FEQPDSGSIMLDGEDVTNVPPHLRH----INMVFQSYALFP 55
Query: 243 HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302
H+TV+E + + +R K + + V+ L L + ++ +SGG+++
Sbjct: 56 HMTVEENVAFGLKMR------KVPRAEIKPRVLEALRLVQLEE--FADRKPHQLSGGQQQ 107
Query: 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFH 361
RV + ++ P +L LDEP S LD ++ L+ I E G T V H +
Sbjct: 108 RVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTM 167
Query: 362 KFDKLILLGKGSLLYFGKASE 382
D++ ++ KG + G E
Sbjct: 168 S-DRIAIMRKGKIAQIGTPEE 187
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 84.6 bits (209), Expect = 7e-18
Identities = 67/230 (29%), Positives = 111/230 (48%), Gaps = 22/230 (9%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY---SK 225
+K ++N ++ ++ GE L+GP+G+GK+T+ +L G M G IT P ++
Sbjct: 16 DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLG--MISPDRGKITVLGEPVPSRAR 73
Query: 226 SLKSKIGFVTQDDVLFPHLTVKETL-TYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ 284
+ IG V Q D L P TV+E L + + + ++ E ++ LE
Sbjct: 74 LARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGM----STREIEAVIPSLLEFARLESKA 129
Query: 285 DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA 344
D V +SGG ++R+ + +I +P LL LDEPT+GLD I + L+ +
Sbjct: 130 DVR-----VALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLAR 184
Query: 345 GKTVVTTIH--QPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGC 392
GKT++ T H + + RL D+L +L G + G+ + IGC
Sbjct: 185 GKTILLTTHFMEEAERL---CDRLCVLESGRKIAEGRPHALID--EQIGC 229
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 85.5 bits (212), Expect = 8e-18
Identities = 65/193 (33%), Positives = 103/193 (53%), Gaps = 28/193 (14%)
Query: 159 VILKGMTSS-EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVG---- 213
V L+ +T + + I I ++ GE + +GPSG GK+TLL +++G L + T G
Sbjct: 4 VTLRNVTKAYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAG-LEDITSGDLFI 62
Query: 214 GSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAID 273
G ND P ++ +G V Q L+PHL+V E +++ L+L K++ +R
Sbjct: 63 GEKRMNDVPPAER---GVGMVFQSYALYPHLSVAENMSFG--LKLAGA-KKEEINQRVNQ 116
Query: 274 V--INELG--LERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDST 329
V + +L L+R + +SGG+R+RV IG ++ PS+ LDEP S LD+
Sbjct: 117 VAEVLQLAHLLDRKP---------KALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDA- 166
Query: 330 TALRIVQMLQDIA 342
ALR VQM +I+
Sbjct: 167 -ALR-VQMRIEIS 177
|
Length = 369 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 82.2 bits (204), Expect = 8e-18
Identities = 50/189 (26%), Positives = 86/189 (45%), Gaps = 17/189 (8%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS-L 227
+ + +G++ ++ GE L L GP+GSGKTTLL L++G L P G+I + +
Sbjct: 14 GRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLL--PPAAGTIKLDGGDIDDPDV 71
Query: 228 KSKIGFVTQDDVLFPHLTVKETLTY-AALLRLPNTLTKQQKEKRAIDVINELGLERCQDT 286
++ + + P LTV E L + AA L +E + +GL
Sbjct: 72 AEACHYLGHRNAMKPALTVAENLEFWAAFLG--------GEELDIAAALEAVGLAPLAHL 123
Query: 287 MIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGK 346
G +S G+++RV + ++ N + LDEPT+ LD+ ++++ G
Sbjct: 124 PFG-----YLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGG 178
Query: 347 TVVTTIHQP 355
V+ H P
Sbjct: 179 IVIAATHIP 187
|
Length = 207 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 83.5 bits (206), Expect = 8e-18
Identities = 69/251 (27%), Positives = 119/251 (47%), Gaps = 44/251 (17%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLL---NLLSGRLMEPTVGGSITYNDHP-YS 224
+ + L GI N E+ AL+GPSG GK+T L N ++ + T+ G+++ Y+
Sbjct: 17 KFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYA 76
Query: 225 KS-----LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG 279
+ L+ ++G V Q FP ++ E + Y LRL K+K +D E
Sbjct: 77 PNEDVVQLRKQVGMVFQQPNPFP-FSIYENVIYG--LRL-----AGVKDKAVLDEAVETS 128
Query: 280 L------ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALR 333
L + +D + + +SGG+++RVCI + + P ++ LDEPTS LD ++ +
Sbjct: 129 LKQAAIWDEVKDHLHESAL--SLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQ 186
Query: 334 IVQMLQDIAEAGKTVVTT--IHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIG 391
I ML ++ + ++ T +HQ +SR+ DK G+L+ F
Sbjct: 187 IENMLLELRDQYTIILVTHSMHQ-ASRI---SDKTAFFLTGNLIEFAD------------ 230
Query: 392 CSPQIAMNPAE 402
+ Q+ +NP E
Sbjct: 231 -TKQMFLNPKE 240
|
Length = 252 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 87.1 bits (216), Expect = 8e-18
Identities = 68/219 (31%), Positives = 113/219 (51%), Gaps = 17/219 (7%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS----KSLK 228
L+G+ +V PGE +AL+GPSG+GK+TL LL R +P G I + L+
Sbjct: 356 LDGLNLTVRPGETVALVGPSGAGKSTLFQLLL-RFYDPQ-SGRILLDGVDLRQLDPAELR 413
Query: 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMI 288
+++ V QD VLF +V E + Y + + A + I L DT +
Sbjct: 414 ARMALVPQDPVLFAA-SVMENIRYGRPDATDEEVEAAARAAHAHEFI--SALPEGYDTYL 470
Query: 289 GGSFVRGV--SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGK 346
G RGV SGG+R+R+ I I+ + +L LDE TS LD+ + ++VQ + G+
Sbjct: 471 GE---RGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESE-QLVQQALETLMKGR 526
Query: 347 TVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385
T + H+ ++ L K D+++++ +G ++ G +E +A
Sbjct: 527 TTLIIAHRLATVL--KADRIVVMDQGRIVAQGTHAELIA 563
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 82.6 bits (204), Expect = 3e-17
Identities = 65/223 (29%), Positives = 117/223 (52%), Gaps = 23/223 (10%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP--YSK----S 226
L GI ++ GEV A++G +G+GK+TL L+G +++P G I ++ P YS+
Sbjct: 22 LKGININIKKGEVTAILGGNGAGKSTLFQNLNG-ILKP-SSGRILFDGKPIDYSRKGLMK 79
Query: 227 LKSKIGFVTQ--DDVLFPHLTVKETLTYAAL-LRLPNTLTKQQKEKRAIDVINELGLERC 283
L+ +G V Q D+ LF +V + +++ A+ L+LP + + KR + + G+E
Sbjct: 80 LRESVGMVFQDPDNQLFS-ASVYQDVSFGAVNLKLP----EDEVRKRVDNALKRTGIEHL 134
Query: 284 QDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA- 342
+D +S G++KRV I +++ P +L LDEPT+GLD I+++L ++
Sbjct: 135 KDKP-----THCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQK 189
Query: 343 EAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385
E G T++ H + D + ++ +G ++ G E A
Sbjct: 190 ELGLTIIIATHDIDIVPLY-CDNVFVMKEGRVILQGNPKEVFA 231
|
Length = 283 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 81.5 bits (201), Expect = 4e-17
Identities = 57/199 (28%), Positives = 100/199 (50%), Gaps = 18/199 (9%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRL-MEPTV--GGSITYNDHPYSKS--- 226
L I S+ EV A++GPSG GK+T + L+ + M P V G + YN K
Sbjct: 28 LKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVD 87
Query: 227 ---LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL-ER 282
L+ IG V Q FP ++ + + Y R+ T K++ ++ + ++ L +
Sbjct: 88 LVELRKNIGMVFQKGNPFPQ-SIFDNVAYGP--RIHGTKNKKKLQEIVEKSLKDVALWDE 144
Query: 283 CQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA 342
+D + + +SGG+++R+CI + NP +L +DEPTS LD + +I +++ +
Sbjct: 145 VKDRLHTQAL--SLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLK 202
Query: 343 EAGKTVVTTIH--QPSSRL 359
E T+V H Q ++R+
Sbjct: 203 EK-YTIVIVTHNMQQAARV 220
|
Length = 259 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 81.5 bits (201), Expect = 4e-17
Identities = 60/230 (26%), Positives = 107/230 (46%), Gaps = 29/230 (12%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLL---NLLSGRLMEPTVGGSI------TYN 219
EK + +T + ++ A++GPSG GKTTLL N ++ + V G I Y+
Sbjct: 15 EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYD 74
Query: 220 DHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG 279
+ K+G V Q FP +++ + + + R+ K K +D I E
Sbjct: 75 PQLDVTEYRKKVGMVFQKPTPFP-MSIYDNVAFG--PRIHGV-----KSKHKLDRIVEES 126
Query: 280 LERC-------QDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTAL 332
L++ + G+ +SGG+++R+CI + + P ++ LDEPTS LD
Sbjct: 127 LKKAALWDEVKSELNKPGT---RLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQ 183
Query: 333 RIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382
RI ++L++++E T+V H + D + + +G L+ +G E
Sbjct: 184 RIEKLLEELSEN-YTIVIVTHNIGQAI-RIADYIAFMYRGELIEYGPTRE 231
|
Length = 250 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 81.4 bits (201), Expect = 4e-17
Identities = 62/218 (28%), Positives = 112/218 (51%), Gaps = 13/218 (5%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITY---NDHPYSKSLK 228
I++G+ + PG + L+GP+GSGK+TLL LL+G G++ + H S+ +
Sbjct: 16 IVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAG--ALRPDAGTVDLAGVDLHGLSRRAR 73
Query: 229 S-KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTM 287
+ ++ V QD LTV++ + AL R+P+ + + + + L R + +
Sbjct: 74 ARRVALVEQDSDTAVPLTVRDVV---ALGRIPH-RSLWAGDSPHDAAVVDRALARTELSH 129
Query: 288 IGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKT 347
+ + +SGGER+RV + + P LL LDEPT+ LD L + +++++A G T
Sbjct: 130 LADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVT 189
Query: 348 VVTTIHQPSSRLFHKF-DKLILLGKGSLLYFGKASEAM 384
VV +H + L + D +++L G ++ G E +
Sbjct: 190 VVAALHDLN--LAASYCDHVVVLDGGRVVAAGPPREVL 225
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 81.2 bits (200), Expect = 5e-17
Identities = 63/223 (28%), Positives = 112/223 (50%), Gaps = 24/223 (10%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLM-EPTVGGSITYNDHPYSKS----- 226
L+ + +++ GE++AL+GPSGSGK+TLL LSG + + + G I +
Sbjct: 20 LHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLAR 79
Query: 227 ----LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLP------NTLTKQQKEKRAIDVIN 276
++ G++ Q L L+V E + AL P + T++QK+ RA+ +
Sbjct: 80 DIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQ-RALQALT 138
Query: 277 ELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQ 336
+G+ V +SGG+++RV I ++ ++ DEP + LD +A ++
Sbjct: 139 RVGMVH-----FAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMD 193
Query: 337 MLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378
L+DI + G TVV T+HQ L + ++++ L +G + Y G
Sbjct: 194 TLRDINQNDGITVVVTLHQVDYALRY-CERIVALRQGHVFYDG 235
|
Length = 262 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 81.3 bits (201), Expect = 7e-17
Identities = 67/246 (27%), Positives = 121/246 (49%), Gaps = 21/246 (8%)
Query: 167 SEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS-- 224
+ + +LN ++ S+ GE +AL+G SG GK+TL LL G L P+ G++++ P +
Sbjct: 22 HQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVG-LESPS-QGNVSWRGEPLAKL 79
Query: 225 -----KSLKSKIGFVTQDDV--LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINE 277
K+ + I V QD + + P TV+E + LR +L K ++ RA +++
Sbjct: 80 NRAQRKAFRRDIQMVFQDSISAVNPRKTVREII--REPLRHLLSLDKAERLARASEMLRA 137
Query: 278 LGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQM 337
+ L D + +SGG+ +RVC+ + + P LL LDE S LD ++++
Sbjct: 138 VDL----DDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRL 193
Query: 338 LQDIAEAGKTVVTTI-HQPSSRLFHKF-DKLILLGKGSLLYFGKASEAMAYFSSIGCSPQ 395
L+ + + T I H RL +F +++++ G ++ + + + S G Q
Sbjct: 194 LKKLQQQFGTACLFITH--DLRLVERFCQRVMVMDNGQIVETQPVGDKLTFSSPAGRVLQ 251
Query: 396 IAMNPA 401
A+ PA
Sbjct: 252 NAVLPA 257
|
Length = 268 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 83.4 bits (206), Expect = 7e-17
Identities = 59/218 (27%), Positives = 106/218 (48%), Gaps = 13/218 (5%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY----SKSL 227
+L+G+ SV G ++ L+GP+G+GKTTLL ++G + PT G ++ +++
Sbjct: 18 VLDGVDLSVREGSLVGLVGPNGAGKTTLLRAING-TLTPTAG-TVLVAGDDVEALSARAA 75
Query: 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTM 287
++ V QD L V++ + R P+ ++ E +ER
Sbjct: 76 SRRVASVPQDTSLSFEFDVRQVVEMG---RTPH-RSRFDTWTETDRAAVERAMERTGVAQ 131
Query: 288 IGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKT 347
V +SGGER+RV + + +L LDEPT+ LD +R +++++ + + GKT
Sbjct: 132 FADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKT 191
Query: 348 VVTTIHQPSSRLFHKF-DKLILLGKGSLLYFGKASEAM 384
V IH L ++ D+L+LL G + G ++ +
Sbjct: 192 AVAAIHDLD--LAARYCDELVLLADGRVRAAGPPADVL 227
|
Length = 402 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 84.1 bits (209), Expect = 7e-17
Identities = 55/186 (29%), Positives = 90/186 (48%), Gaps = 20/186 (10%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS-----KSL 227
+ ++ SV GE+ AL+G +G+GK+TL+ +L G L +P G I + ++
Sbjct: 20 NDDVSLSVKKGEIHALLGENGAGKSTLMKILFG-LYQPD-SGEIRVDGKEVRIKSPRDAI 77
Query: 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTM 287
+ IG V Q +L P LTV E + + ++Q R ++ GL D
Sbjct: 78 RLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPD-- 135
Query: 288 IGGSFVRGVSGGERKRVCIGNEII----INPSLLFLDEPTSGLDSTTALRIVQMLQDIAE 343
+ V +S GE++RV EI+ LL LDEPT+ L A + ++L+ +A
Sbjct: 136 ---AKVADLSVGEQQRV----EILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAA 188
Query: 344 AGKTVV 349
GKT++
Sbjct: 189 EGKTII 194
|
Length = 501 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 80.8 bits (199), Expect = 7e-17
Identities = 61/230 (26%), Positives = 114/230 (49%), Gaps = 29/230 (12%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLL---NLLSGRLMEPTVGGSITYN-DHPYS 224
EK LN I + ++ AL+GPSG GK+T L N ++ + + G + + + Y
Sbjct: 16 EKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYD 75
Query: 225 K-----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG 279
K L+ ++G V Q FP +++ + + Y R+ K+K+ +D I E
Sbjct: 76 KDVDVVELRKRVGMVFQKPNPFP-MSIYDNVAYGP--RIHGI-----KDKKELDKIVEWA 127
Query: 280 LERC------QDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALR 333
L++ +D + + +SGG+++R+CI I + P ++ +DEPTS LD + L+
Sbjct: 128 LKKAALWDEVKDDLKKSAL--KLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLK 185
Query: 334 IVQMLQDIAEAGKTVVTTIH-QPSSRLFHKFDKLILLGKGSLLYFGKASE 382
I ++ ++ + V+ T + Q +SR+ + L+G L+ F K +
Sbjct: 186 IEDLMVELKKEYTIVIVTHNMQQASRV-SDYTAFFLMGD--LIEFNKTEK 232
|
Length = 251 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 83.5 bits (207), Expect = 1e-16
Identities = 58/204 (28%), Positives = 101/204 (49%), Gaps = 20/204 (9%)
Query: 165 TSSEEKDILNGITGSVNPGEVLALMGPSGSGKT----TLLNLLSGRLMEPTVGGSITYND 220
+ + GI+ + GE LAL+G SGSGK+ ++L LL GSI ++
Sbjct: 18 QEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAA-HPSGSILFDG 76
Query: 221 HPYSKSLKS--------KIGFVTQDDV--LFPHLTVKETLTYAALLRLPNTLTKQQKEKR 270
+ + KIG + Q+ + L P T+ + L A +LRL L++ R
Sbjct: 77 EDLLAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQL--AEVLRLHRGLSRAAARAR 134
Query: 271 AIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTT 330
A++++ +G+ + + ++ +SGG+R+RV I + P LL DEPT+ LD T
Sbjct: 135 ALELLELVGIPEPEKRL--DAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTV 192
Query: 331 ALRIVQMLQDI-AEAGKTVVTTIH 353
+I+ +L+++ AE G ++ H
Sbjct: 193 QAQILDLLKELQAELGMAILFITH 216
|
Length = 534 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 80.7 bits (199), Expect = 1e-16
Identities = 59/199 (29%), Positives = 104/199 (52%), Gaps = 27/199 (13%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME--PTV--GGSITYN----- 219
E L I ++ EV A++GPSG GK+T + L+ R++E P+V G I Y
Sbjct: 36 EDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLN-RMVELVPSVKTTGKILYRDQNIF 94
Query: 220 DHPYSKS-LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL 278
D YS L++ +G V Q FP ++ + +TY P K+K+ +D I E
Sbjct: 95 DKSYSVEELRTNVGMVFQKPNPFPK-SIYDNVTYG-----PKI--HGIKDKKTLDEIVEK 146
Query: 279 GL------ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTAL 332
L + +D + ++ G+SGG+++R+CI + I P ++ +DEPTS LD + L
Sbjct: 147 SLRGAAIWDELKDRLHDNAY--GLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTL 204
Query: 333 RIVQMLQDIAEAGKTVVTT 351
++ +++Q++ + ++ T
Sbjct: 205 KVEELVQELKKDYSIIIVT 223
|
Length = 271 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 80.0 bits (198), Expect = 1e-16
Identities = 53/232 (22%), Positives = 95/232 (40%), Gaps = 25/232 (10%)
Query: 161 LKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYND 220
KG E L I+ + GE + ++G +G+GK+TLL L++G + +PT G +
Sbjct: 31 AKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAG-IYKPT-SGKVKVT- 87
Query: 221 HPYSKSLKSKIGFVTQDDVLF-PHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG 279
+ I F P LT +E + L+ LT+++ +++ ++I
Sbjct: 88 ----GKVAPLIEL----GAGFDPELTGRENIYLRGLI---LGLTRKEIDEKVDEIIEFAE 136
Query: 280 LERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQ 339
L D V+ S G R+ + P +L LDE + D+ + ++ L
Sbjct: 137 LGDFIDQP-----VKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLN 191
Query: 340 DIAEAGKTVVTTIHQPS--SRLFHKFDKLILLGKGSLLYFGKASEAMAYFSS 389
++ E KT+V H + D+ I L G + G E + +
Sbjct: 192 ELVEKNKTIVLVSHDLGAIKQY---CDRAIWLEHGQIRMEGSPEEVIPAYEE 240
|
Length = 249 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 80.0 bits (198), Expect = 1e-16
Identities = 65/239 (27%), Positives = 121/239 (50%), Gaps = 26/239 (10%)
Query: 151 KFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP 210
K +V++ + E + L ++ +N GE +A++G +GSGK+T+ +L+G L++P
Sbjct: 9 KVENVSFSY------PNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTG-LLKP 61
Query: 211 TVGG----SITYNDHPYSKSLKSKIGFVTQD-DVLFPHLTVKETLTYAALLRLPNTLTKQ 265
G IT + + ++ KIG + Q+ D F TV++ + + L N
Sbjct: 62 QSGEIKIDGITISKENLKE-IRKKIGIIFQNPDNQFIGATVEDDIAFG----LENKKVPP 116
Query: 266 QKEKRAI-DVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTS 324
+K K I D+ ++G+E D + +SGG+++RV I + + +NP ++ DE TS
Sbjct: 117 KKMKDIIDDLAKKVGMEDYLDKE-----PQNLSGGQKQRVAIASVLALNPEIIIFDESTS 171
Query: 325 GLDSTTALRIVQMLQDIAEAG-KTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382
LD I +++ D+ + KT+++ H + DK+I+ +G L+ GK E
Sbjct: 172 MLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAI--LADKVIVFSEGKLIAQGKPKE 228
|
Length = 271 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 83.5 bits (207), Expect = 1e-16
Identities = 61/239 (25%), Positives = 104/239 (43%), Gaps = 43/239 (17%)
Query: 128 EDIEAGTRERPKFQTEPTLPIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLA 187
ED R+ P + ++F DV++ + ++ PG+ +A
Sbjct: 313 EDAVPDVRDPPGAIDLGRVKGAVEFDDVSFSYDNSRQG-------VEDVSFEAKPGQTVA 365
Query: 188 LMGPSGSGKTTLLNLLSGRLMEPTVG---------GSITYNDHPYSKSLKSKIGFVTQDD 238
++GP+G+GK+TL+NLL R+ +P G ++T SL+ I V QD
Sbjct: 366 IVGPTGAGKSTLINLLQ-RVFDPQSGRILIDGTDIRTVTR------ASLRRNIAVVFQDA 418
Query: 239 VLF-----PHLTV-KETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSF 292
LF ++ V + T + + +A D I DT++G
Sbjct: 419 GLFNRSIEDNIRVGRPDATDEEMRA-------AAERAQAHDFI--ERKPDGYDTVVGE-- 467
Query: 293 VRG--VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVV 349
RG +SGGER+R+ I ++ +P +L LDE TS LD T ++ L ++ + T +
Sbjct: 468 -RGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFI 525
|
Length = 588 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 77.8 bits (192), Expect = 2e-16
Identities = 52/192 (27%), Positives = 88/192 (45%), Gaps = 21/192 (10%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225
E+ + G++ ++N GE L + GP+G GKTTLL +L+G L+ P G + +N ++
Sbjct: 12 ERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAG-LLRPD-SGEVRWNGTALAEQRD 69
Query: 226 SLKSKIGFVTQDDVLFPHLTVKETLT-YAALLRLPNTLTKQQKEKRAI-DVINELGLERC 283
I ++ L P L+ E L +AA+ +R I D + +GL
Sbjct: 70 EPHRNILYLGHLPGLKPELSALENLHFWAAIH---------GGAQRTIEDALAAVGLTGF 120
Query: 284 QDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE 343
+D +S G+++R+ + + L LDEPT+ LD + +L+
Sbjct: 121 EDLP-----AAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLA 175
Query: 344 AGKTVVTTIHQP 355
G V+ T HQ
Sbjct: 176 RGGIVLLTTHQD 187
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 79.5 bits (196), Expect = 2e-16
Identities = 54/219 (24%), Positives = 106/219 (48%), Gaps = 19/219 (8%)
Query: 167 SEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS-- 224
+ +L ++ S+ GE + L+G SG GK+TL LL G L +P G++++
Sbjct: 21 KQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLG-LEKPA-QGTVSFRGQDLYQL 78
Query: 225 -----KSLKSKIGFVTQD--DVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINE 277
++ + + V QD + P +TV++ + LR +L + +++ R ++++
Sbjct: 79 DRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQII--GEPLRHLTSLDESEQKARIAELLDM 136
Query: 278 LGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQM 337
+GL + R +SGG+ +R+ I + + P L+ LDE S LD I+++
Sbjct: 137 VGL----RSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILEL 192
Query: 338 LQDIAEAGKTVVTTIHQPSSRLFHKF-DKLILLGKGSLL 375
L+ + +A T I RL F ++ ++ KG ++
Sbjct: 193 LRKLQQAFGTAYLFITH-DLRLVQSFCQRVAVMDKGQIV 230
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 78.4 bits (193), Expect = 3e-16
Identities = 58/198 (29%), Positives = 92/198 (46%), Gaps = 20/198 (10%)
Query: 179 SVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDD 238
S + GE+L L+GP+G+GKTTLL + G + P G++ K IG+V Q
Sbjct: 2 SADKGELLGLLGPNGAGKTTLLRAILG--LIPPAKGTVKVAGASPGKG-WRHIGYVPQRH 58
Query: 239 VL---FP----HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGS 291
FP H + + LR P + A+ L R T +
Sbjct: 59 EFAWDFPISVAHTVMSGRTGHIGWLRRP-----CVADFAAVRD----ALRRVGLTELADR 109
Query: 292 FVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTT 351
V +SGG+R+RV + + PS+L LDEP +GLD T + ++ ++A AG ++ T
Sbjct: 110 PVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMT 169
Query: 352 IHQPSSRLFHKFDKLILL 369
H + + D+++LL
Sbjct: 170 THDLAQAM-ATCDRVVLL 186
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 78.8 bits (195), Expect = 3e-16
Identities = 63/220 (28%), Positives = 106/220 (48%), Gaps = 24/220 (10%)
Query: 176 ITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP---YSKSLKSKI- 231
++ V GE+L L+GP+G+GK+TLL ++G L GSI + P +S + ++
Sbjct: 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPGS---GSIQFAGQPLEAWSAAELARHR 71
Query: 232 GFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGS 291
+++Q + V + LT L P+ + +V LGL D + G
Sbjct: 72 AYLSQQQTPPFAMPVFQYLT----LHQPDKTRTEAVASALNEVAEALGL---DDKL--GR 122
Query: 292 FVRGVSGGERKRVCIGNEII-----INPS--LLFLDEPTSGLDSTTALRIVQMLQDIAEA 344
V +SGGE +RV + ++ INP+ LL LDEP + LD + ++L ++ +
Sbjct: 123 SVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQ 182
Query: 345 GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384
G VV + H + D++ LL +G LL G+ E +
Sbjct: 183 GIAVVMSSHD-LNHTLRHADRVWLLKQGKLLASGRRDEVL 221
|
Length = 248 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 78.9 bits (194), Expect = 3e-16
Identities = 63/227 (27%), Positives = 115/227 (50%), Gaps = 21/227 (9%)
Query: 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-----PTVGGSITYNDHP 222
+K IL IT + + +MGPSGSGK+TLL +L+ RL+E V G + Y
Sbjct: 21 NDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLN-RLIEIYDSKIKVDGKVLYFGKD 79
Query: 223 YSK----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAI--DVIN 276
+ L+ ++G V Q FPHL++ + + Y L + K+++E + I + +
Sbjct: 80 IFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYP----LKSHGIKEKREIKKIVEECLR 135
Query: 277 ELGL-ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIV 335
++GL + D + S +SGG+++R+ I + + P +L +DEPTS +D + I
Sbjct: 136 KVGLWKEVYDRL--NSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIE 193
Query: 336 QMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382
+++ ++ +V H P ++ D + L G L+ +G ++E
Sbjct: 194 KLITELKNE-IAIVIVSHNP-QQVARVADYVAFLYNGELVEWGSSNE 238
|
Length = 257 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 81.9 bits (203), Expect = 3e-16
Identities = 51/185 (27%), Positives = 82/185 (44%), Gaps = 42/185 (22%)
Query: 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKS 229
+ +L ++ ++NPGE + L+G +G+GK+TLL +L+G L EP G +T
Sbjct: 16 RPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGEL-EPD-SGEVTR-PKGL------ 66
Query: 230 KIGFVTQDDVLFPHLTVKETLT------YAALLRLP--------------NTLTKQQKEK 269
++G+++Q+ L P TV + + L L L +E
Sbjct: 67 RVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEEL 126
Query: 270 -------RAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEP 322
RA + + LG + S SGG R+RV + ++ P LL LDEP
Sbjct: 127 DGWTLEARAEEALLGLGFPDEDRPV--SSL----SGGWRRRVALARALLEEPDLLLLDEP 180
Query: 323 TSGLD 327
T+ LD
Sbjct: 181 TNHLD 185
|
Length = 530 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 78.5 bits (193), Expect = 4e-16
Identities = 54/201 (26%), Positives = 98/201 (48%), Gaps = 18/201 (8%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSIT----------Y 218
+K + + V G V AL+GPSG GKTT L ++ R+ + T G +T Y
Sbjct: 16 DKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAIN-RMHDLTPGARVTGRILLDGQDIY 74
Query: 219 NDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL 278
+++ ++G V Q FP ++V + + A L+L + + A +
Sbjct: 75 GPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVV--AGLKLAGIRDRDHLMEVAERSLRGA 132
Query: 279 GL-ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQM 337
L + +D + + G+SGG+++R+CI + + P +L +DEPTS LD + RI +
Sbjct: 133 ALWDEVKDRL--KTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDL 190
Query: 338 LQDIAEAGKTVVTT--IHQPS 356
+ D+ + ++ T +HQ +
Sbjct: 191 MTDLKKVTTIIIVTHNMHQAA 211
|
Length = 252 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 78.6 bits (194), Expect = 4e-16
Identities = 63/227 (27%), Positives = 109/227 (48%), Gaps = 31/227 (13%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLS--GRLMEP-TVGGSITY-NDHPYSK--- 225
L I + +V AL+GPSG GK+T L L+ L+ + G + Y
Sbjct: 19 LKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDID 78
Query: 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL--- 280
L+ ++G V Q FP +++ + + Y P T K+K+ +D I E L
Sbjct: 79 VNQLRKRVGMVFQQPNPFP-MSIYDNVAYG-----PRT--HGIKDKKKLDEIVEKSLKGA 130
Query: 281 ---ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQM 337
+ +D + + G+SGG+++R+CI + + P +L +DEPTS LD + L+I ++
Sbjct: 131 ALWDEVKDRLKKSAL--GLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEEL 188
Query: 338 LQDIAEAGKTVVTTIH--QPSSRLFHKFDKLILLGKGSLLYFGKASE 382
+Q++ + T+V H Q +SR+ DK G ++ FG +
Sbjct: 189 IQEL-KKDYTIVIVTHNMQQASRI---SDKTAFFLNGEIVEFGDTVD 231
|
Length = 250 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 77.8 bits (192), Expect = 4e-16
Identities = 55/198 (27%), Positives = 96/198 (48%), Gaps = 19/198 (9%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLL-------SGRLMEPTVGGSI---TYNDH 221
+L ++ +VN GE +AL GPSG+GK+TLL L SGR++ G + +
Sbjct: 23 VLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPR 82
Query: 222 PYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL- 280
+ + IG+V+Q + P ++ E + L R + ++ RA +++ L +
Sbjct: 83 EVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLER---GVPREAARARARELLARLNIP 139
Query: 281 ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQD 340
ER + +F SGGE++RV I I + +L LDEPT+ LD+ +V+++ +
Sbjct: 140 ERLWH-LPPATF----SGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAE 194
Query: 341 IAEAGKTVVTTIHQPSSR 358
G ++ H R
Sbjct: 195 AKARGAALIGIFHDEEVR 212
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 78.5 bits (194), Expect = 5e-16
Identities = 59/201 (29%), Positives = 92/201 (45%), Gaps = 25/201 (12%)
Query: 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227
EK LNG++ + G+ + ++G +G+GK+TLLN ++G L PT G I + +K
Sbjct: 17 LEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLK-PT-SGQILIDGVDVTKKS 74
Query: 228 KSK----IGFVTQD--DVLFPHLTVKETLTYAAL--------LRLPNTLTKQQKEKRAID 273
+K + V QD P LT++E L A L +E+ A
Sbjct: 75 VAKRANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLA-- 132
Query: 274 VINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALR 333
LGLE IG +SGG+R+ + + + P +L LDE T+ LD TA
Sbjct: 133 -RLGLGLENRLSDRIG-----LLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEF 186
Query: 334 IVQMLQDIAEAGK-TVVTTIH 353
++++ I E K T + H
Sbjct: 187 VMELTAKIVEEHKLTTLMVTH 207
|
Length = 263 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 78.0 bits (192), Expect = 5e-16
Identities = 52/184 (28%), Positives = 87/184 (47%), Gaps = 22/184 (11%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP-TVGGSITYN-----DHPYSKS 226
L+ ++ +N GE++ L+G +G+GKTTLL L G +P G I ++ D +K
Sbjct: 21 LHEVSLHINQGEIVTLIGANGAGKTTLLGTLCG---DPRATSGRIVFDGKDITDWQTAKI 77
Query: 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ-- 284
++ + V + +F +TV+E L Q++ K ++ L R Q
Sbjct: 78 MREAVAIVPEGRRVFSRMTVEENLAMGGFF--AERDQFQERIKWVYELFPRLHERRIQRA 135
Query: 285 DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA 344
TM SGGE++ + IG ++ P LL LDEP+ GL +I ++ + E
Sbjct: 136 GTM---------SGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQ 186
Query: 345 GKTV 348
G T+
Sbjct: 187 GMTI 190
|
Length = 237 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 81.6 bits (202), Expect = 5e-16
Identities = 60/203 (29%), Positives = 98/203 (48%), Gaps = 20/203 (9%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKI 231
+L+ + V PGE L + G SG+GKT+LL L+G + P G I+ S +
Sbjct: 408 LLSELNFEVRPGERLLITGESGAGKTSLLRALAG--LWPWGSGRISMPAD-------SAL 458
Query: 232 GFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIG-G 290
F+ Q P T++E L Y PN + + V++++GL + +
Sbjct: 459 LFLPQR-PYLPQGTLREALCY------PNAAPDFS-DAELVAVLHKVGLGDLAERLDEED 510
Query: 291 SFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVT 350
+ R +SGGE++R+ ++ P +FLDE TS LD T R+ Q+L++ TV++
Sbjct: 511 RWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEELP-DATVIS 569
Query: 351 TIHQPSSRLFHKFDKLILLGKGS 373
H+P+ FH +L LL
Sbjct: 570 VGHRPTLWNFHS-RQLELLDDAG 591
|
Length = 604 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 78.3 bits (193), Expect = 7e-16
Identities = 60/237 (25%), Positives = 122/237 (51%), Gaps = 25/237 (10%)
Query: 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME 209
++F +V+Y KG + E ++ + G+ A++G +GSGK+TL+ ++ L++
Sbjct: 3 IRFDNVSY-TYQKG--TPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINA-LLK 58
Query: 210 PTVGGSITYND--------HPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNT 261
PT G ++T +D Y + ++ +IG V Q FP + E ++ P
Sbjct: 59 PTTG-TVTVDDITITHKTKDKYIRPVRKRIGMVFQ----FPESQLFEDTVEREIIFGPKN 113
Query: 262 LTKQQKE--KRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFL 319
E A ++ +LG R D M F +SGG+ +++ I + + +NP ++ L
Sbjct: 114 FKMNLDEVKNYAHRLLMDLGFSR--DVMSQSPF--QMSGGQMRKIAIVSILAMNPDIIVL 169
Query: 320 DEPTSGLDSTTALRIVQMLQDIA-EAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLL 375
DEPT+GLD + +++++L+ + + KT++ H + + D++I++ +GS++
Sbjct: 170 DEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHD-MNEVARYADEVIVMKEGSIV 225
|
Length = 286 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 80.1 bits (197), Expect = 8e-16
Identities = 58/213 (27%), Positives = 101/213 (47%), Gaps = 16/213 (7%)
Query: 179 SVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSI-------TYNDHPYSKSLKSKI 231
++ GE+ +MG SGSGK+T++ LL+ RL+EPT G + +D + + KI
Sbjct: 50 AIEEGEIFVIMGLSGSGKSTMVRLLN-RLIEPTRGQVLIDGVDIAKISDAELREVRRKKI 108
Query: 232 GFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGS 291
V Q L PH+TV + + + L ++++EK A+D + ++GLE S
Sbjct: 109 AMVFQSFALMPHMTVLDNTAFG--MELAGINAEERREK-ALDALRQVGLEN-----YAHS 160
Query: 292 FVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTT 351
+ +SGG R+RV + + INP +L +DE S LD + L + + +
Sbjct: 161 YPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVF 220
Query: 352 IHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384
I D++ ++ G ++ G E +
Sbjct: 221 ISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEIL 253
|
Length = 400 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 78.2 bits (193), Expect = 1e-15
Identities = 52/211 (24%), Positives = 102/211 (48%), Gaps = 40/211 (18%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITY---NDH-------- 221
L+ ++ +N GE +A++G +GSGKTT + L+ L+ T G+I + ++
Sbjct: 23 LDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDT--GTIEWIFKDEKNKKKTKEK 80
Query: 222 -----------PYSKSLKS------KIGFVTQ--DDVLFPHLTVKETLTYAALLRLPNTL 262
K +K ++G V Q + LF T+++ + + + +
Sbjct: 81 EKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQ-TIEKDIIFGPV---SMGV 136
Query: 263 TKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEP 322
+K++ +KRA I +GL+ + + F +SGG+++RV + + + P L DEP
Sbjct: 137 SKEEAKKRAAKYIELVGLD--ESYLQRSPF--ELSGGQKRRVALAGILAMEPDFLVFDEP 192
Query: 323 TSGLDSTTALRIVQMLQDIAEAGKTVVTTIH 353
T+GLD I+++ ++ + GKT++ H
Sbjct: 193 TAGLDPQGVKEILEIFDNLNKQGKTIILVTH 223
|
Length = 305 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 79.7 bits (197), Expect = 2e-15
Identities = 76/274 (27%), Positives = 140/274 (51%), Gaps = 34/274 (12%)
Query: 121 FSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFTDVTYKVILKGMTSSEEKDILNGITGSV 180
F+ D+ ++ + G R + + + ++F +VT+ K E L I +
Sbjct: 319 FAILDLEQEKDEGKRVIERAKGD------IEFRNVTFTYPGK------EVPALRNINFKI 366
Query: 181 NPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDH---PYS-KSLKSKIGFVTQ 236
G+ +AL+G SGSGK+T+ NLL+ R + G I + H Y+ SL++++ V+Q
Sbjct: 367 PAGKTVALVGRSGSGKSTIANLLT-RFYDID-EGEILLDGHDLRDYTLASLRNQVALVSQ 424
Query: 237 DDVLFPHLTVKETLTYAALLRLPNTLTKQQKEK-----RAIDVINELGLERCQDTMIGGS 291
+ LF + T+ + YA +++Q E+ A+D IN ++ DT+IG +
Sbjct: 425 NVHLF-NDTIANNIAYAR----TEQYSREQIEEAARMAYAMDFIN--KMDNGLDTVIGEN 477
Query: 292 FVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTT 351
V +SGG+R+R+ I ++ + +L LDE TS LD T + R +Q D + +T +
Sbjct: 478 GVL-LSGGQRQRIAIARALLRDSPILILDEATSALD-TESERAIQAALDELQKNRTSLVI 535
Query: 352 IHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385
H+ S+ K D+++++ G ++ G +E +A
Sbjct: 536 AHRLST--IEKADEILVVEDGEIVERGTHAELLA 567
|
Length = 582 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 76.4 bits (188), Expect = 2e-15
Identities = 57/201 (28%), Positives = 97/201 (48%), Gaps = 26/201 (12%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME----PTVGGSI------TYNDH 221
++ G+ + V ALMGPSG GK+TLL + RL+E V G + Y+
Sbjct: 19 VIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFN-RLLELNEEARVEGEVRLFGRNIYSPD 77
Query: 222 PYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL- 280
++ ++G V Q FPHLT+ + + L N L K +KE +D E L
Sbjct: 78 VDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKL---NGLVKSKKE---LDERVEWALK 131
Query: 281 -----ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIV 335
+ +D + + +SGG+R+R+ I + + P +L +DEPT+ +D +I
Sbjct: 132 KAALWDEVKDRL--NDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIE 189
Query: 336 QMLQDIAEAGKTVVTTIHQPS 356
++L ++ + T+V H P+
Sbjct: 190 ELLFELKKE-YTIVLVTHSPA 209
|
Length = 253 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 79.8 bits (197), Expect = 2e-15
Identities = 67/234 (28%), Positives = 113/234 (48%), Gaps = 37/234 (15%)
Query: 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225
+ ++L+ + + PGE + ++GPSGSGK+TL LL RL P G + + +
Sbjct: 468 DSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQ-RLYTPQHG-QVLVDGVDLAIAD 525
Query: 226 --SLKSKIGFVTQDDVLF------------PHLTVKETLTYAALLRLPNTLTKQQKEKRA 271
L+ ++G V Q++VLF P E + +AA L A
Sbjct: 526 PAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPF-EHVIHAAKL------------AGA 572
Query: 272 IDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTA 331
D I L + +T +G +SGG+R+R+ I ++ NP +L DE TS LD +
Sbjct: 573 HDFI--SELPQGYNTEVGEKGA-NLSGGQRQRIAIARALVGNPRILIFDEATSALDYESE 629
Query: 332 LRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385
I++ +++I G+TV+ H+ S+ D++I+L KG + G+ E +A
Sbjct: 630 ALIMRNMREIC-RGRTVIIIAHRLST--VRACDRIIVLEKGQIAESGRHEELLA 680
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 77.8 bits (192), Expect = 2e-15
Identities = 74/243 (30%), Positives = 121/243 (49%), Gaps = 27/243 (11%)
Query: 159 VILKGMTSSEEKD-ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGG-SI 216
V+LK +T + +++ + ++ G ++ L+GPSG GKTT+L L++G L +PT G I
Sbjct: 7 VVLKNITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAG-LEKPTEGQIFI 65
Query: 217 TYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYA-ALLRLPNTLTKQQKEKRAIDVI 275
D + + I V Q LFPH+++ E + Y +L +P KQ+ K A++++
Sbjct: 66 DGEDVTHRSIQQRDICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRV-KEALELV 124
Query: 276 NELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIV 335
+ G E +V +SGG+++RV + +I+ P +L DEP S LD+ LR
Sbjct: 125 DLAGFED--------RYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDAN--LR-R 173
Query: 336 QMLQDIAEAGKTVVTT---IHQPSSRLFHKFDKLILLGKGSL--------LYFGKASEAM 384
M + I E + T + S F D +I++ KG + LY AS M
Sbjct: 174 SMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQPASRFM 233
Query: 385 AYF 387
A F
Sbjct: 234 ASF 236
|
Length = 351 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 77.0 bits (190), Expect = 2e-15
Identities = 69/243 (28%), Positives = 117/243 (48%), Gaps = 27/243 (11%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYND-HPYSKSL 227
EK L+ + + GE + L+G +GSGK+TL+ L+G L++PT G I + K +
Sbjct: 19 EKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNG-LLKPT-SGKIIIDGVDITDKKV 76
Query: 228 K-----SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTL--TKQQKEKRAIDVINELGL 280
K K+G V Q +P + E + P L ++++ E R +N +GL
Sbjct: 77 KLSDIRKKVGLVFQ----YPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGL 132
Query: 281 ERCQDTMIGGS-FVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQ 339
+ + S F +SGG+++RV I + + P +L LDEPT+GLD I+ ++
Sbjct: 133 DY--EDYKDKSPF--ELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIK 188
Query: 340 DIAEAGK-TVVTTIHQPSSRLFHKF-DKLILLGKGSLLYFGKASEA---MAYFSSIGCS- 393
++ + T++ H S K D++I++ KG G E + SIG +
Sbjct: 189 ELHKEYNMTIILVSH--SMEDVAKLADRIIVMNKGKCELQGTPREVFKEVETLESIGLAV 246
Query: 394 PQI 396
PQ+
Sbjct: 247 PQV 249
|
Length = 287 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 76.7 bits (188), Expect = 2e-15
Identities = 67/212 (31%), Positives = 105/212 (49%), Gaps = 19/212 (8%)
Query: 180 VNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVG----GSITYNDHPYSKSLK---SKIG 232
V G AL+G +GSGK+TLL L+G L++PT G G I + K +K K+G
Sbjct: 29 VKKGSYTALIGHTGSGKSTLLQHLNG-LLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVG 87
Query: 233 FVTQDDVLFPHLTVKETLTYAALLRLPNT--LTKQQKEKRAIDVINELGLERCQDTMIGG 290
V Q FP + E + P + K++ EK A + + +GL +
Sbjct: 88 VVFQ----FPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLAD--EFWEKS 141
Query: 291 SFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVT 350
F +SGG+ +RV I + + P +L LDEPT+GLD + ++Q+ + I ++G+TVV
Sbjct: 142 PF--ELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVL 199
Query: 351 TIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382
H + D + LL KG ++ G S+
Sbjct: 200 VTHLMDDVADYA-DYVYLLEKGHIISCGTPSD 230
|
Length = 288 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 79.1 bits (195), Expect = 2e-15
Identities = 55/192 (28%), Positives = 94/192 (48%), Gaps = 16/192 (8%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGG----------SITYNDHP 222
++ ++ V GE+ ++G SG+GKTTL +++G ++EPT G +T
Sbjct: 300 VDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAG-VLEPTSGEVNVRVGDEWVDMTKPGPD 358
Query: 223 YSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER 282
K IG + Q+ L+PH TV + LT A L LP+ L + +A+ + +G +
Sbjct: 359 GRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELAR----MKAVITLKMVGFDE 414
Query: 283 CQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQ-MLQDI 341
+ I + +S GER RV + +I P ++ LDEPT +D T + + +L+
Sbjct: 415 EKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAR 474
Query: 342 AEAGKTVVTTIH 353
E +T + H
Sbjct: 475 EEMEQTFIIVSH 486
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 79.2 bits (196), Expect = 3e-15
Identities = 54/174 (31%), Positives = 85/174 (48%), Gaps = 33/174 (18%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SL 227
IL+ ++ + PGE +A++GPSGSGK+TLL LL G E GS+ Y+ + ++
Sbjct: 468 ILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLG--FETPESGSVFYDGQDLAGLDVQAV 525
Query: 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQD-- 285
+ ++G V Q+ L ++ E + A L L A + GL +D
Sbjct: 526 RRQLGVVLQNGRLMSG-SIFENIAGGAPLTL----------DEAWEAARMAGLA--EDIR 572
Query: 286 -------TMI--GGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTT 330
T+I GG +SGG+R+R+ I ++ P +L DE TS LD+ T
Sbjct: 573 AMPMGMHTVISEGGG---TLSGGQRQRLLIARALVRKPRILLFDEATSALDNRT 623
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 77.2 bits (190), Expect = 4e-15
Identities = 60/185 (32%), Positives = 85/185 (45%), Gaps = 27/185 (14%)
Query: 179 SVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDH------PYSKSLKSKIG 232
++ GE+ AL+G SG GK+TLL +L+G E G I + PY + I
Sbjct: 41 TIYKGEIFALLGASGCGKSTLLRMLAG--FEQPTAGQIMLDGVDLSHVPPYQRP----IN 94
Query: 233 FVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRA--IDVINE-LGLERCQDTMIG 289
+ Q LFPH+TV++ + + KQ K +A +NE LGL Q+
Sbjct: 95 MMFQSYALFPHMTVEQNIAFG---------LKQDKLPKAEIASRVNEMLGLVHMQE--FA 143
Query: 290 GSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTV 348
+SGG+R+RV + + P LL LDEP LD R+ + DI E G T
Sbjct: 144 KRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTC 203
Query: 349 VTTIH 353
V H
Sbjct: 204 VMVTH 208
|
Length = 377 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 78.4 bits (194), Expect = 5e-15
Identities = 56/213 (26%), Positives = 93/213 (43%), Gaps = 30/213 (14%)
Query: 128 EDIEAGTRERPKFQTEPTLPIYLKFTD-VTYKVIL--KGMTSS--EEKDILNGITGSVNP 182
E +EA E + L K++L + ++ + +L ++ ++
Sbjct: 288 EKLEARLAEERPVEEGKPLAFRFPPPGKRLGKLVLEFENVSKGYDGGRLLLKDLSFRIDR 347
Query: 183 GEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQD-DVLF 241
G+ +A++GP+G+GK+TLL LL+G L P G++ + KIG+ Q D L
Sbjct: 348 GDRIAIVGPNGAGKSTLLKLLAGEL-GPLS-GTVKVGE-------TVKIGYFDQHRDELD 398
Query: 242 PHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301
P TV E L+ E+ + G + V +SGGE+
Sbjct: 399 PDKTVLEELSEGF---------PDGDEQEVRAYLGRFGF--TGEDQ--EKPVGVLSGGEK 445
Query: 302 KRVCIGNEIIINPSLLFLDEPTSGLD--STTAL 332
R+ + ++ P+LL LDEPT+ LD S AL
Sbjct: 446 ARLLLAKLLLQPPNLLLLDEPTNHLDIESLEAL 478
|
Length = 530 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 74.1 bits (182), Expect = 5e-15
Identities = 50/193 (25%), Positives = 85/193 (44%), Gaps = 19/193 (9%)
Query: 166 SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYN---DHP 222
+ + + +G++ ++ GE L + GP+GSGKTTLL +L+G L P G + N
Sbjct: 9 ERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAG-LSPPL-AGRVLLNGGPLDF 66
Query: 223 YSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER 282
S+ + ++ + L+V E L + + +Q +E A+ + G E
Sbjct: 67 QRDSIARGLLYLGHAPGIKTTLSVLENLRFWH----ADHSDEQVEE--ALARVGLNGFED 120
Query: 283 CQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA 342
V +S G+++RV + ++ L LDEPT+ LD R + +
Sbjct: 121 RP--------VAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHC 172
Query: 343 EAGKTVVTTIHQP 355
G VV T HQ
Sbjct: 173 ARGGMVVLTTHQD 185
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 75.4 bits (186), Expect = 6e-15
Identities = 59/200 (29%), Positives = 94/200 (47%), Gaps = 26/200 (13%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLS--GRLMEPT-VGGSITYNDHP-YS 224
+K L I+ + V A +GPSG GK+TLL + L++ + G I + Y
Sbjct: 37 DKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYD 96
Query: 225 K-----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG 279
K L+ ++G V Q FP ++ E + Y LRL +R +D E
Sbjct: 97 KKVDVAELRRRVGMVFQRPNPFPK-SIYENVVYG--LRLQGI-----NNRRVLDEAVERS 148
Query: 280 LERC------QDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALR 333
L +D + +F G+SGG+++R+ I I I P +L LDEPTS LD + L+
Sbjct: 149 LRGAALWDEVKDRLHENAF--GLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLK 206
Query: 334 IVQMLQDIAEAGKTVVTTIH 353
I +++ ++ T+V H
Sbjct: 207 IEELITELKSK-YTIVIVTH 225
|
Length = 272 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 76.3 bits (188), Expect = 6e-15
Identities = 60/220 (27%), Positives = 103/220 (46%), Gaps = 16/220 (7%)
Query: 176 ITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDH-PYS--KSLKSKIG 232
I+ + GE++ +G +G+GK+T L +L+G L+ PT G + N P+ + IG
Sbjct: 43 ISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLL-PT-SGKVRVNGKDPFRRREEYLRSIG 100
Query: 233 FVT-QDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGS 291
V Q L+ L ++L +L+L + + +R + L LE
Sbjct: 101 LVMGQKLQLWWDLPALDSLE---VLKLIYEIPDDEFAERLDFLTEILDLEGFLKWP---- 153
Query: 292 FVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI-AEAGKTVVT 350
VR +S G+R R + ++ P +LFLDEPT GLD I + L++ E TV+
Sbjct: 154 -VRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLL 212
Query: 351 TIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSI 390
T H + D+++L+ +G L++ G ++ F
Sbjct: 213 TTHIFDD-IATLCDRVLLIDQGQLVFDGTLAQLQEQFGPY 251
|
Length = 325 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 77.9 bits (192), Expect = 7e-15
Identities = 65/261 (24%), Positives = 108/261 (41%), Gaps = 52/261 (19%)
Query: 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYN-------- 219
+ K++L I+ ++ GEVL ++G SG+GK+ L+++L G G I Y+
Sbjct: 11 DGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCG 70
Query: 220 -----------------------------DHPYSKSLKSKIGFVTQDD-VLFPHLTVKET 249
+ ++ +I + Q L+ TV +
Sbjct: 71 YVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDN 130
Query: 250 LTYAALLRLPNTLTKQQKE--KRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307
+ L + + KE RA+D+I + L + T I R +SGGE++RV +
Sbjct: 131 V-----LEALEEIGYEGKEAVGRAVDLIEMVQLSH-RITHIA----RDLSGGEKQRVVLA 180
Query: 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA-EAGKTVVTTIHQPSSRLFHKFDKL 366
++ P L DEPT LD TA + L++ +G ++V T H P + DK
Sbjct: 181 RQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEV-IEDLSDKA 239
Query: 367 ILLGKGSLLYFGKASEAMAYF 387
I L G + G E +A F
Sbjct: 240 IWLENGEIKEEGTPDEVVAVF 260
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 74.8 bits (184), Expect = 7e-15
Identities = 63/192 (32%), Positives = 93/192 (48%), Gaps = 32/192 (16%)
Query: 182 PGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP------YSKS-------LK 228
PGEVL ++G SGSGKTTLL +SGRL P G++TY Y+ S L+
Sbjct: 31 PGEVLGIVGESGSGKTTLLKCISGRLT-PD-AGTVTYRMRDGQPRDLYTMSEAERRRLLR 88
Query: 229 SKIGFVTQD--DVLFPHLT----VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER 282
++ GFV Q+ D L ++ + E L N + Q + E+ L+R
Sbjct: 89 TEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEV----EIDLDR 144
Query: 283 CQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQD-I 341
D R SGG ++R+ I ++ P L+F+DEPT GLD + R++ +L+ +
Sbjct: 145 IDD------LPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLV 198
Query: 342 AEAGKTVVTTIH 353
E G VV H
Sbjct: 199 RELGLAVVIVTH 210
|
Length = 258 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 74.7 bits (183), Expect = 7e-15
Identities = 50/193 (25%), Positives = 92/193 (47%), Gaps = 23/193 (11%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLL-------NLLSGRLMEPTVGGSITYNDHP-YS 224
L GI+ + V+A +GPSG GK+T L +L+ +E G I + Y
Sbjct: 19 LKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLE----GEIRIDGRNIYD 74
Query: 225 KS-----LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG 279
K L+ +G V Q FP ++ E + Y LR+ +R + +
Sbjct: 75 KGVQVDELRKNVGMVFQRPNPFPK-SIFENVAYG--LRVNGVKDNAFIRQRVEETLKGAA 131
Query: 280 L-ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQML 338
L + +D + +F +SGG+++R+CI + ++PS+L +DEP S LD + ++ +++
Sbjct: 132 LWDEVKDKLKESAF--ALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELI 189
Query: 339 QDIAEAGKTVVTT 351
++ + V+ T
Sbjct: 190 HELKKDYTIVIVT 202
|
Length = 250 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 73.3 bits (181), Expect = 9e-15
Identities = 50/179 (27%), Positives = 84/179 (46%), Gaps = 14/179 (7%)
Query: 179 SVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDD 238
++N GE++ + GP+G+GKT+LL +L+G L P G + + P + D
Sbjct: 23 TLNAGELVQIEGPNGAGKTSLLRILAG-LARPD-AGEVLWQGEPIRRQRDE-----YHQD 75
Query: 239 VLF-PHLT-VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGV 296
+L+ H +K LT LR L ++ + + ++GL +D VR +
Sbjct: 76 LLYLGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDVP-----VRQL 130
Query: 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQP 355
S G+++RV + + L LDEP + +D R+ +L AE G V+ T HQ
Sbjct: 131 SAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQD 189
|
Length = 204 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 75.7 bits (186), Expect = 9e-15
Identities = 64/242 (26%), Positives = 106/242 (43%), Gaps = 39/242 (16%)
Query: 166 SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVG----GSITYNDH 221
E LN I+ + ++ ++G SGSGK+TL+ +G L++ G G I D
Sbjct: 35 QENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNG-LIKSKYGTIQVGDIYIGDK 93
Query: 222 PYS---------------KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTL--TK 264
+ K L+ ++ V Q FP + + ++ P L K
Sbjct: 94 KNNHELITNPYSKKIKNFKELRRRVSMVFQ----FPEYQLFKDTIEKDIMFGPVALGVKK 149
Query: 265 QQKEKRAIDVINELGLERCQDTMIGGSFVR----GVSGGERKRVCIGNEIIINPSLLFLD 320
+ +K A +N++GL S++ G+SGG+++RV I + I P +L D
Sbjct: 150 SEAKKLAKFYLNKMGL--------DDSYLERSPFGLSGGQKRRVAIAGILAIQPEILIFD 201
Query: 321 EPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380
EPT+GLD ++Q++ D KTV H L D++I++ KG +L G
Sbjct: 202 EPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVL-EVADEVIVMDKGKILKTGTP 260
Query: 381 SE 382
E
Sbjct: 261 YE 262
|
Length = 320 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 74.6 bits (184), Expect = 9e-15
Identities = 62/200 (31%), Positives = 89/200 (44%), Gaps = 48/200 (24%)
Query: 182 PGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP------YSKS-------LK 228
PGEVL ++G SGSGKTTLLN LS RL P G + Y Y+ S L+
Sbjct: 31 PGEVLGIVGESGSGKTTLLNALSARLA-PD-AGEVHYRMRDGQLRDLYALSEAERRRLLR 88
Query: 229 SKIGFVTQD--DVLFPHLT----VKETLT------YAALLRLPNTLTKQQKEKRAIDVIN 276
++ GFV Q D L ++ + E L Y + A D +
Sbjct: 89 TEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDI------------RATAGDWLE 136
Query: 277 --ELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRI 334
E+ R D SGG ++R+ I ++ +P L+F+DEPT GLD + R+
Sbjct: 137 RVEIDAARIDDL------PTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARL 190
Query: 335 VQMLQD-IAEAGKTVVTTIH 353
+ +L+ + E G VV H
Sbjct: 191 LDLLRGLVRELGLAVVIVTH 210
|
Length = 258 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 74.8 bits (184), Expect = 9e-15
Identities = 63/198 (31%), Positives = 102/198 (51%), Gaps = 20/198 (10%)
Query: 165 TSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS 224
+ S K+ LN I +A++GP+G+GK+TL +G +++PT GS+ P +
Sbjct: 12 SYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNG-ILKPT-SGSVLIRGEPIT 69
Query: 225 KS----LKSKIGFVTQ--DDVLFPHLTVKETLTYAALLRLPNT-LTKQQKEKRAIDVINE 277
K ++ +G V Q DD +F TV++ + + + N L ++ R ++
Sbjct: 70 KENIREVRKFVGLVFQNPDDQIFSP-TVEQDIAFGPI----NLGLDEETVAHRVSSALHM 124
Query: 278 LGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQM 337
LGLE +D + +SGGE+KRV I I + P +L LDEPT+GLD ++
Sbjct: 125 LGLEELRDRV-----PHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDF 179
Query: 338 LQDIAEA-GKTVVTTIHQ 354
L D+ E G TV+ + HQ
Sbjct: 180 LNDLPETYGMTVIFSTHQ 197
|
Length = 277 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 73.5 bits (181), Expect = 1e-14
Identities = 47/192 (24%), Positives = 84/192 (43%), Gaps = 16/192 (8%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---K 225
E+ + + ++ ++N GE L + GP+G+GKTTLL +L+G L+ P G + + P +
Sbjct: 14 ERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAG-LLRPD-AGEVYWQGEPIQNVRE 71
Query: 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQD 285
S + ++ + LT E L + + + ++GL +D
Sbjct: 72 SYHQALLYLGHQPGIKTELTALENLHFW------QRFHGSGNAATIWEALAQVGLAGLED 125
Query: 286 TMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAG 345
V +S G+++RV + + L LDEP + LD + ++ A G
Sbjct: 126 LP-----VGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQG 180
Query: 346 KTVVTTIHQPSS 357
V+ T HQP
Sbjct: 181 GIVLLTTHQPLP 192
|
Length = 209 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 73.8 bits (181), Expect = 1e-14
Identities = 53/188 (28%), Positives = 93/188 (49%), Gaps = 17/188 (9%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK------- 225
L G+T + PGE+ L G SG+GK+TLL L+ G +E G I ++ H ++
Sbjct: 18 LQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICG--IERPSAGKIWFSGHDITRLKNREVP 75
Query: 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQD 285
L+ +IG + QD L TV + + ++ + +++ A+D + L +
Sbjct: 76 FLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAK--- 132
Query: 286 TMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAG 345
+F +SGGE++RV I ++ P++L DEPT LD + I+++ ++ G
Sbjct: 133 -----NFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVG 187
Query: 346 KTVVTTIH 353
TV+ H
Sbjct: 188 VTVLMATH 195
|
Length = 222 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 76.0 bits (188), Expect = 1e-14
Identities = 59/173 (34%), Positives = 91/173 (52%), Gaps = 25/173 (14%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSK- 230
++ GI V GE + L+GPSG GK+TLL +++G +E G I ++ L+
Sbjct: 19 VIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAG--LERITSGEIWIGGRVVNE-LEPAD 75
Query: 231 --IGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDV--INELG--LERCQ 284
I V Q+ L+PH++V+E + Y L++ K + E+R + I EL L+R
Sbjct: 76 RDIAMVFQNYALYPHMSVRENMAYG--LKIRGM-PKAEIEERVAEAARILELEPLLDRKP 132
Query: 285 DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQM 337
R +SGG+R+RV +G I+ P++ DEP S LD+ LR VQM
Sbjct: 133 ---------RELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDA--KLR-VQM 173
|
Length = 356 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 74.5 bits (183), Expect = 1e-14
Identities = 55/210 (26%), Positives = 107/210 (50%), Gaps = 16/210 (7%)
Query: 183 GEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP-----YSKSLKSKIGFVTQD 237
G+ LA++G +GSGK+TL +L+G ++EPT G I NDHP YS K +I + QD
Sbjct: 39 GQTLAIIGENGSGKSTLAKMLAG-MIEPT-SGEILINDHPLHFGDYSFRSK-RIRMIFQD 95
Query: 238 --DVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRG 295
L P L + + L LRL L +Q+ K+ + + +GL +
Sbjct: 96 PNTSLNPRLRIGQILD--FPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANY----YPHM 149
Query: 296 VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQP 355
++ G+++RV + +I+ P ++ DE + LD + +++ ++ ++ E + Q
Sbjct: 150 LAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQH 209
Query: 356 SSRLFHKFDKLILLGKGSLLYFGKASEAMA 385
+ H D+++++ +G ++ G ++ +A
Sbjct: 210 IGMIKHISDQVLVMHEGEVVERGSTADVLA 239
|
Length = 267 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 76.5 bits (188), Expect = 2e-14
Identities = 77/270 (28%), Positives = 124/270 (45%), Gaps = 41/270 (15%)
Query: 129 DIEAGTRERPKFQTEPTLPIY---LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEV 185
D+E +R + P LP ++F +T++ + + ++ G+
Sbjct: 311 DLEDSVFQREEPADAPELPNVKGAVEFRHITFEF-------ANSSQGVFDVSFEAKAGQT 363
Query: 186 LALMGPSGSGKTTLLNLLSGRLMEPTVG---------GSITYNDHPYSKSLKSKIGFVTQ 236
+A++GP+G+GKTTL+NLL R+ +PTVG ++T +SL+ I V Q
Sbjct: 364 VAIVGPTGAGKTTLINLLQ-RVYDPTVGQILIDGIDINTVT------RESLRKSIATVFQ 416
Query: 237 DDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ--DTMIGGSFVR 294
D LF +++E + + + K A D I L+R DT++G R
Sbjct: 417 DAGLFNR-SIRENIRLGREGATDEEVYEAAKAAAAHDFI----LKRSNGYDTLVGE---R 468
Query: 295 G--VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTI 352
G +SGGER+R+ I I+ N +L LDE TS LD T R V+ D +T
Sbjct: 469 GNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEAR-VKNAIDALRKNRTTFIIA 527
Query: 353 HQPSSRLFHKFDKLILLGKGSLLYFGKASE 382
H+ S+ D ++ L +G L+ G E
Sbjct: 528 HRLST--VRNADLVLFLDQGRLIEKGSFQE 555
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Score = 73.1 bits (180), Expect = 2e-14
Identities = 60/187 (32%), Positives = 94/187 (50%), Gaps = 35/187 (18%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL- 227
E +IL G+ S+N GE+ A+MGP+GSGK+TL +++G + G I + +S+
Sbjct: 19 ENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKG----ESIL 74
Query: 228 ------KSKIG-FVT-QDDVLFPHLTVKETLTYAALLRLP-NTLTKQQ--KEKRAI---D 273
++ +G F+ Q + P ++ A LRL N+ K Q E + +
Sbjct: 75 DLEPEERAHLGIFLAFQYPIEIP------GVSNADFLRLAYNSKRKFQGLPELDPLEFLE 128
Query: 274 VINE-LGLERCQDTMIGGSFVRGVSGGERKRVCIGNEI----IINPSLLFLDEPTSGLDS 328
+INE L L + + + G SGGE+KR NEI +++ L LDE SGLD
Sbjct: 129 IINEKLKLVGMDPSFLSRNVNEGFSGGEKKR----NEILQMALLDSELAILDETDSGLD- 183
Query: 329 TTALRIV 335
AL+I+
Sbjct: 184 IDALKII 190
|
Length = 252 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 73.1 bits (179), Expect = 2e-14
Identities = 56/221 (25%), Positives = 107/221 (48%), Gaps = 19/221 (8%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLL---NLLSGRLMEPTVGGSITY-NDHPYSK--- 225
L+GI+ E+ AL+GPSG GK+T L N ++ + + G I + + Y
Sbjct: 20 LHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMD 79
Query: 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL-ER 282
L+ ++G V Q FP +V + + Y L++ K+ ++R + + + + +
Sbjct: 80 LVELRKEVGMVFQQPTPFP-FSVYDNVAYG--LKIAGVKDKELIDQRVEESLKQAAIWKE 136
Query: 283 CQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA 342
+D + + + SGG+++R+CI + + P ++ LDEPTS LD ++ I + L ++
Sbjct: 137 TKDNLDRNA--QAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELK 194
Query: 343 EAGKTVVTTIH-QPSSRLFHKFDKLILLGKGSLLYFGKASE 382
++ T + Q + R+ D+ L G L+ G E
Sbjct: 195 HQYTFIMVTHNLQQAGRI---SDQTAFLMNGDLIEAGPTEE 232
|
Length = 251 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 73.0 bits (179), Expect = 3e-14
Identities = 58/198 (29%), Positives = 99/198 (50%), Gaps = 26/198 (13%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSIT-----YNDHPY 223
E L I + +V AL+GPSG GK+TLL L+ R+ + G IT + Y
Sbjct: 15 ENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLN-RMNDLIEGVKITGKLTMDGEDIY 73
Query: 224 S----KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG 279
L+ K+G V Q FP +++ E + Y LR + K+K+ +D + E
Sbjct: 74 GNIDVADLRIKVGMVFQKPNPFP-MSIYENVAYG--LR-----AQGIKDKKVLDEVVERS 125
Query: 280 L------ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALR 333
L + +D + +F G+SGG+++R+CI I + P ++ +DEPTS LD +
Sbjct: 126 LRGAALWDEVKDRLKSHAF--GLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHK 183
Query: 334 IVQMLQDIAEAGKTVVTT 351
I ++++++ + V+ T
Sbjct: 184 IEELMEELKKNYTIVIVT 201
|
Length = 249 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 71.7 bits (177), Expect = 3e-14
Identities = 58/224 (25%), Positives = 95/224 (42%), Gaps = 49/224 (21%)
Query: 166 SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK 225
E L I V GE++A++GP GSGK++LL+ L G L + GS++
Sbjct: 14 EQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGEL--EKLSGSVSVP------ 65
Query: 226 SLKSKIGFVTQDDVLFPHL---TVKETLTYAALLRLPNTL-TKQQKEKRAIDVINELGLE 281
I +V+Q P + T++E N L K E+R VI LE
Sbjct: 66 ---GSIAYVSQ----EPWIQNGTIRE-----------NILFGKPFDEERYEKVIKACALE 107
Query: 282 RCQD---------TMIGGSFVRGV--SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTT 330
D T IG +G+ SGG+++R+ + + + + LD+P S +D+
Sbjct: 108 P--DLEILPDGDLTEIG---EKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHV 162
Query: 331 ALRIVQM-LQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGS 373
I + + + KT + HQ L D++++L G
Sbjct: 163 GRHIFENCILGLLLNNKTRILVTHQLQ--LLPHADQIVVLDNGR 204
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 75.6 bits (186), Expect = 3e-14
Identities = 64/279 (22%), Positives = 121/279 (43%), Gaps = 47/279 (16%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-----SL 227
L + +V PGE+ AL+G +G+GK+TL+ +LSG + EPT G+IT N+ Y+K +
Sbjct: 21 LKSVNLTVYPGEIHALLGENGAGKSTLMKVLSG-IHEPT-KGTITINNINYNKLDHKLAA 78
Query: 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLP-------NTLTKQQKEKRAIDVINELGL 280
+ IG + Q+ + LTV E L R N + ++ RA ++ +GL
Sbjct: 79 QLGIGIIYQELSVIDELTVLENLYIG---RHLTKKVCGVNIIDWREMRVRAAMMLLRVGL 135
Query: 281 ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQD 340
+ D V +S ++ + I ++++ ++ +DEPTS L + + ++
Sbjct: 136 KVDLDE-----KVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQ 190
Query: 341 IAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGCSPQIAMNP 400
+ + G +V H+ + + D+ ++ GS + G S
Sbjct: 191 LRKEGTAIVYISHK-LAEIRRICDRYTVMKDGSSVCSGMVS------------------- 230
Query: 401 AEFLLDLANGNLHDVSVPSELQDRVQTENSENDTANGKP 439
D++N ++ + V ELQ+R +
Sbjct: 231 -----DVSNDDIVRLMVGRELQNRFNAMKENVSNLAHET 264
|
Length = 510 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 73.7 bits (181), Expect = 3e-14
Identities = 61/213 (28%), Positives = 105/213 (49%), Gaps = 21/213 (9%)
Query: 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME 209
+KF +V Y I T E+K + N I+ + G +AL+G +GSGK+TL+ + L++
Sbjct: 3 IKFENVDY--IYSPGTPMEKKGLDN-ISFELEEGSFVALVGHTGSGKSTLMQHFNA-LLK 58
Query: 210 PT------VGGSITYNDHPYS-KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTL 262
P+ G IT + K L+ K+ V Q FP + E + P
Sbjct: 59 PSSGTITIAGYHITPETGNKNLKKLRKKVSLVFQ----FPEAQLFENTVLKDVEFGPKNF 114
Query: 263 --TKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLD 320
++ + +++A+ + ++GL +D + F +SGG+ +RV I + P +L LD
Sbjct: 115 GFSEDEAKEKALKWLKKVGLS--EDLISKSPF--ELSGGQMRRVAIAGVMAYEPEILCLD 170
Query: 321 EPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIH 353
EP +GLD ++Q+ +D +AG TV+ H
Sbjct: 171 EPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTH 203
|
Length = 287 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 75.1 bits (185), Expect = 5e-14
Identities = 49/177 (27%), Positives = 90/177 (50%), Gaps = 22/177 (12%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSK- 230
+L GI +++ GEV AL+G +G+GK+TL+ +++G + P G++ +P ++ +K
Sbjct: 26 VLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAG--IVPPDSGTLEIGGNPCARLTPAKA 83
Query: 231 ----IGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDT 286
I V Q+ +LFP+L+VKE + L LP Q ++ ++ LG + D+
Sbjct: 84 HQLGIYLVPQEPLLFPNLSVKENI----LFGLPKR---QASMQKMKQLLAALGCQLDLDS 136
Query: 287 MIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGL---DSTTALRIVQMLQD 340
G V +R+ V I ++ + +L LDEPT+ L ++ ++ L
Sbjct: 137 SAGSLEV-----ADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLA 188
|
Length = 510 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 75.3 bits (186), Expect = 5e-14
Identities = 57/208 (27%), Positives = 102/208 (49%), Gaps = 30/208 (14%)
Query: 179 SVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS----KSLKSKIGFV 234
++ G+ +AL+GPSG+GKT+LLN L G L GS+ N +S + + +V
Sbjct: 372 TLPAGQRIALVGPSGAGKTSLLNALLGFL---PYQGSLKINGIELRELDPESWRKHLSWV 428
Query: 235 TQDDVLFPHLTVKETLTYAALLRLPNTLTKQQ-----KEKRAIDVINEL--GLERCQDTM 287
Q+ L H T+++ + LL P+ + +Q + + + L GL DT
Sbjct: 429 GQNPQLP-HGTLRDNV----LLGNPD-ASDEQLQQALENAWVSEFLPLLPQGL----DTP 478
Query: 288 IG-GSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGK 346
IG + G+S G+ +R+ + ++ LL LDEPT+ LD+ + ++Q L A +
Sbjct: 479 IGDQA--AGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNA-ASRRQ 535
Query: 347 TVVTTIHQPSSRLFHKFDKLILLGKGSL 374
T + HQ ++D++ ++ G +
Sbjct: 536 TTLMVTHQLED--LAQWDQIWVMQDGQI 561
|
Length = 588 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 71.7 bits (176), Expect = 5e-14
Identities = 47/166 (28%), Positives = 82/166 (49%), Gaps = 16/166 (9%)
Query: 166 SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS- 224
+ + ILN I+ S+ GE + GPSG GK+TLL +++ L+ PT G++ + S
Sbjct: 16 LAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVAS-LISPTS-GTLLFEGEDIST 73
Query: 225 ---KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE 281
+ + ++ + Q LF TV + L + +R +Q +D + L
Sbjct: 74 LKPEIYRQQVSYCAQTPTLFGD-TVYDNLIFPWQIR-----NQQPDPAIFLDDLERFALP 127
Query: 282 RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLD 327
DT++ + + +SGGE++R+ + + P +L LDE TS LD
Sbjct: 128 ---DTILTKN-IAELSGGEKQRISLIRNLQFMPKVLLLDEITSALD 169
|
Length = 225 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 72.1 bits (177), Expect = 6e-14
Identities = 52/160 (32%), Positives = 86/160 (53%), Gaps = 24/160 (15%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228
++ +L+ ++ + PG++L L+GP+G+GK+TL+ ++ G L+ P G I N K
Sbjct: 16 QRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLG-LVAPD-EGVIKRNG-------K 66
Query: 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRL-PNTLTKQQKEKRAIDVINELGLERCQDTM 287
+IG+V Q +L LT LRL P T K+ D++ L+R Q
Sbjct: 67 LRIGYVPQK----LYLDTTLPLTVNRFLRLRPGT-------KKE-DILP--ALKRVQAGH 112
Query: 288 IGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLD 327
+ + ++ +SGGE +RV + ++ P LL LDEPT G+D
Sbjct: 113 LIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVD 152
|
Length = 251 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 74.7 bits (184), Expect = 7e-14
Identities = 64/198 (32%), Positives = 112/198 (56%), Gaps = 21/198 (10%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225
+ L + ++ PG++L + GP+GSGK+TLL+L+ R + + G I ++D P +K
Sbjct: 327 DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQ-RHFDVS-EGDIRFHDIPLTKLQL 384
Query: 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRA-IDVINE--LGLE 281
S +S++ V+Q LF TV + AL R P+ T+Q+ E A + +++ L L
Sbjct: 385 DSWRSRLAVVSQTPFLFSD-TVANNI---ALGR-PDA-TQQEIEHVARLASVHDDILRLP 438
Query: 282 RCQDTMIGGSFVRGV--SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQ 339
+ DT +G RGV SGG+++R+ I +++N +L LD+ S +D T +I+ L+
Sbjct: 439 QGYDTEVGE---RGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLR 495
Query: 340 DIAEAGKTVVTTIHQPSS 357
E G+TV+ + H+ S+
Sbjct: 496 QWGE-GRTVIISAHRLSA 512
|
Length = 569 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 72.1 bits (177), Expect = 9e-14
Identities = 60/223 (26%), Positives = 104/223 (46%), Gaps = 32/223 (14%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLL---NLLSGRLMEPTVGGSIT------YNDHPY 223
L+ ++ + +V A++GPSG GK+T L N ++ + V G +T Y+
Sbjct: 55 LDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVD 114
Query: 224 SKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC 283
+L+ +IG V Q FP ++ + + Y L++ Q ID E L R
Sbjct: 115 PVALRRRIGMVFQKPNPFPK-SIYDNVAYG--LKI-------QGYDGDIDERVEESLRRA 164
Query: 284 ------QDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQM 337
+D + +SGG+++R+CI I +P ++ +DEP S LD +I +
Sbjct: 165 ALWDEVKDQLDSSGL--DLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDL 222
Query: 338 LQDIAEAGKTVVTTIH--QPSSRLFHKFDKLILLGKGSLLYFG 378
++++AE TVV H Q ++R+ K + L G L+ F
Sbjct: 223 IEELAEE-YTVVIVTHNMQQAARISDK--TAVFLTGGELVEFD 262
|
Length = 285 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 71.5 bits (175), Expect = 9e-14
Identities = 53/214 (24%), Positives = 99/214 (46%), Gaps = 15/214 (7%)
Query: 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLL-------NLLSGRLMEPTV--GGSITY 218
++ IL + + V AL+GPSG GK+T + +L+ G E + G Y
Sbjct: 14 DDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIY 73
Query: 219 NDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL 278
+ L+ K+G V Q FP ++ + + Y LR+ + E+R + +
Sbjct: 74 DPAVDVVELRKKVGMVFQKPNPFPK-SIFDNVAYG--LRIHGEDDEDFIEERVEESLKAA 130
Query: 279 GL-ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQM 337
L + +D + + G+SGG+++R+CI I ++P ++ +DEP S LD + +I +
Sbjct: 131 ALWDEVKDKLDKSAL--GLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDL 188
Query: 338 LQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 371
+ + E V+ T + + K+ L G+
Sbjct: 189 IHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGE 222
|
Length = 250 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 71.2 bits (174), Expect = 9e-14
Identities = 58/224 (25%), Positives = 113/224 (50%), Gaps = 20/224 (8%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLL---NLLSGRLMEPTVGGSITYNDHPYSK 225
+K L I + ++ AL+G SG GK+T L N ++ ++ + + G +
Sbjct: 14 KKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAK--IDGLVEIEGKDVKN 71
Query: 226 ----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAI--DVINELG 279
+L+ +G V Q +F ++ E ++YA L + + K + E+ A+ D + ++G
Sbjct: 72 QDVVALRKNVGMVFQQPNVFVK-SIYENISYAPKL---HGMIKNKDEEEALVVDCLQKVG 127
Query: 280 L-ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQML 338
L E +D + + +SGG+++R+CI + I P LL LDEPTS LD ++ I ++L
Sbjct: 128 LFEEVKDKLKQNAL--ALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELL 185
Query: 339 QDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382
++++ ++ T + + + LG+ L+ FG++ E
Sbjct: 186 KELSHNLSMIMVTHNMQQGKRVADYTAFFHLGE--LIEFGESKE 227
|
Length = 246 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 68.8 bits (169), Expect = 1e-13
Identities = 26/90 (28%), Positives = 52/90 (57%), Gaps = 14/90 (15%)
Query: 151 KFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP 210
+ +++++ + L+ ++ ++ GE++AL+GP+GSGK+TLL ++G L++P
Sbjct: 1 EIENLSFRY--------GGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAG-LLKP 51
Query: 211 TVGGSITYNDHPYSKS----LKSKIGFVTQ 236
T G I + +K L+ +IG+V Q
Sbjct: 52 T-SGEILIDGKDIAKLPLEELRRRIGYVPQ 80
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 73.7 bits (181), Expect = 1e-13
Identities = 52/211 (24%), Positives = 101/211 (47%), Gaps = 23/211 (10%)
Query: 153 TDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTV 212
+ ++V + +TS + K + + I+ SV GE+L G GSG+T L+N L G ++
Sbjct: 262 HETVFEV--RNVTSRDRKKVRD-ISFSVCRGEILGFAGLVGSGRTELMNCLFG--VDKRA 316
Query: 213 GGSITYN------DHPYSKSLKSKIGFVTQ---DDVLFPHLTVKETLTYAALLRLPN--- 260
GG I N P ++K + ++T+ D+ FP+ ++ + + + L+
Sbjct: 317 GGEIRLNGKDISPRSPLD-AVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKG 375
Query: 261 --TLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 318
L + E+R + EL +C + +SGG +++V I + P ++
Sbjct: 376 AMGLFHEVDEQRTAENQRELLALKCHSV---NQNITELSGGNQQKVLISKWLCCCPEVII 432
Query: 319 LDEPTSGLDSTTALRIVQMLQDIAEAGKTVV 349
DEPT G+D I ++++ +A+ GK ++
Sbjct: 433 FDEPTRGIDVGAKAEIYKVMRQLADDGKVIL 463
|
Length = 510 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 72.3 bits (178), Expect = 1e-13
Identities = 49/168 (29%), Positives = 86/168 (51%), Gaps = 25/168 (14%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYN-------DHPYSK 225
L+G++ ++ G+ LA++G SG GK+TL LL+ ++E GG + Y D K
Sbjct: 31 LDGVSFTLERGKTLAVVGESGCGKSTLARLLT--MIETPTGGELYYQGQDLLKADPEAQK 88
Query: 226 SLKSKIGFVTQDDV--LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL--E 281
L+ KI V Q+ L P V + L L + +L+ ++ ++A+ ++ ++GL E
Sbjct: 89 LLRQKIQIVFQNPYGSLNPRKKVGQIL--EEPLLINTSLSAAERREKALAMMAKVGLRPE 146
Query: 282 RCQ--DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLD 327
M SGG+R+R+ I ++++P ++ DEP S LD
Sbjct: 147 HYDRYPHMF--------SGGQRQRIAIARALMLDPDVVVADEPVSALD 186
|
Length = 327 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 71.3 bits (175), Expect = 1e-13
Identities = 62/227 (27%), Positives = 108/227 (47%), Gaps = 36/227 (15%)
Query: 179 SVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVG----GSITYNDHP-YSK-----SLK 228
++ P V A +GPSG GK+T+L L+ R+ E G G + + Y +++
Sbjct: 26 NIEPRSVTAFIGPSGCGKSTVLRTLN-RMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVR 84
Query: 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL------ER 282
IG V Q FP +++++ + A L+L + K+ +D + E L
Sbjct: 85 RTIGMVFQRPNPFPTMSIRDNV--VAGLKLNG-----VRNKKDLDELVEKSLRGANLWNE 137
Query: 283 CQDTM--IGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQD 340
+D + GG G+SGG+++R+CI I + P +L +DEP S LD + L I ++ +
Sbjct: 138 VKDRLDKPGG----GLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINE 193
Query: 341 IAEAGKTVVTTIH--QPSSRLFHK--FDKLILLGK-GSLLYFGKASE 382
+ + T+V H Q ++R+ + F L GK G L+ +
Sbjct: 194 LKQD-YTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEIDDTEK 239
|
Length = 258 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 71.8 bits (176), Expect = 1e-13
Identities = 59/214 (27%), Positives = 102/214 (47%), Gaps = 36/214 (16%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLL---NLLSGRLMEPTVGGSIT------YNDHPY 223
L G++ + V AL+GPSG GK+T L N ++ R+ + GS+ Y D
Sbjct: 61 LKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120
Query: 224 SKSLKSKIGFVTQDDVLFPHLTVKETLTYAA----------LLRLPNTLTKQQKEKRAID 273
L+ ++G V Q FP +++E ++Y L RL L + K+ D
Sbjct: 121 LVELRKRVGMVFQSPNPFPK-SIRENISYGPRKHGDINTGLLARL---LGRDDKDAE--D 174
Query: 274 VINELGLERC------QDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLD 327
+ E L + D + G+SGG+++R+CI + ++P ++ +DEP S LD
Sbjct: 175 ELVERSLRQAALWDEVNDRL--DDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALD 232
Query: 328 STTALRIVQMLQDIAEAGKTVVTTIH--QPSSRL 359
+I +++++AE TVV H Q ++R+
Sbjct: 233 PIATSKIEDLIEELAEE-YTVVVVTHNMQQAARI 265
|
Length = 305 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 73.3 bits (181), Expect = 2e-13
Identities = 42/191 (21%), Positives = 81/191 (42%), Gaps = 21/191 (10%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP------YSKS 226
+ ++ V GE++ + G +G+G++ L+ +SG + G I N +
Sbjct: 274 VKDVSFEVRAGEIVGIAGVAGNGQSELVEAISG--LRKPASGRILLNGKDVLGRLSPRER 331
Query: 227 LKSKIGFVTQD---DVLFPHLTVKE-----TLTYAALLRLPNTLTKQQKEKRAIDVINEL 278
+ + +V +D L L++ E R + + K A ++I E
Sbjct: 332 RRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIR-KFARELIEEF 390
Query: 279 GLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQML 338
+ R + R +SGG ++++ + E+ P LL +PT GLD I + L
Sbjct: 391 DV-RAPSP---DAPARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERL 446
Query: 339 QDIAEAGKTVV 349
++ +AGK V+
Sbjct: 447 LELRDAGKAVL 457
|
Length = 501 |
| >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 70.6 bits (173), Expect = 2e-13
Identities = 57/183 (31%), Positives = 87/183 (47%), Gaps = 21/183 (11%)
Query: 166 SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDH---- 221
S E+K IL G+ V PGEV A+MGP+GSGK+TL L+GR GG++ +
Sbjct: 10 SVEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLE 69
Query: 222 --PYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAID------ 273
P ++ + I Q V P ++ + L A + + + +D
Sbjct: 70 LSPEDRAGEG-IFMAFQYPVEIPGVSNQFFLQTAL------NAVRSYRGQEPLDRFDFQD 122
Query: 274 -VINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTAL 332
+ ++ L + + ++ S G SGGE+KR I ++ P L LDE SGLD AL
Sbjct: 123 LMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLD-IDAL 181
Query: 333 RIV 335
+IV
Sbjct: 182 KIV 184
|
Length = 248 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 70.6 bits (173), Expect = 2e-13
Identities = 56/198 (28%), Positives = 97/198 (48%), Gaps = 28/198 (14%)
Query: 174 NGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP------YSKS- 226
++ + PGEVL ++G SGSGK+TLL L+GRL G+ TY Y S
Sbjct: 20 RDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDH--GTATYIMRSGAELELYQLSE 77
Query: 227 ------LKSKIGFVTQDDVLFPHLTVKETLTYAALL--RLPNTLTKQQKEKR--AIDVIN 276
++++ GFV Q+ P ++ ++ A + RL + R A D +
Sbjct: 78 AERRRLMRTEWGFVHQN----PRDGLRMRVSAGANIGERLMAIGARHYGNIRATAQDWLE 133
Query: 277 ELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQ 336
E+ ++ + + +F SGG ++R+ I ++ P L+F+DEPT GLD + R++
Sbjct: 134 EVEIDPTRIDDLPRAF----SGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLD 189
Query: 337 MLQD-IAEAGKTVVTTIH 353
+L+ + + G V+ H
Sbjct: 190 LLRGLVRDLGLAVIIVTH 207
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 70.7 bits (173), Expect = 2e-13
Identities = 57/196 (29%), Positives = 99/196 (50%), Gaps = 18/196 (9%)
Query: 171 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME----PTVGGSITYNDHPYSK- 225
++L+G+ + + ALMGPSGSGK+TLL + + RL+E V G + + K
Sbjct: 17 EVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFN-RLIELYPEARVSGEVYLDGQDIFKM 75
Query: 226 ---SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKE--KRAIDVINELGL 280
L+ ++ V Q P+L++ E + A L+L N L K +KE +R + + L
Sbjct: 76 DVIELRRRVQMVFQIPNPIPNLSIFENV--ALGLKL-NRLVKSKKELQERVRWALEKAQL 132
Query: 281 -ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQ 339
+ +D + + +SGG+++R+CI + P +L DEPT+ LD +I +
Sbjct: 133 WDEVKDRL--DAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFL 190
Query: 340 DIAEAGKTVVTTIHQP 355
++ + T+V H P
Sbjct: 191 ELKKD-MTIVLVTHFP 205
|
Length = 250 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 70.5 bits (173), Expect = 2e-13
Identities = 45/179 (25%), Positives = 76/179 (42%), Gaps = 27/179 (15%)
Query: 178 GSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQD 237
GS++ EV+ ++GP+G GKTT + +L+G L +P G D + + Q
Sbjct: 20 GSISESEVIGILGPNGIGKTTFIKMLAGVL-KPDEGDIEIELD---------TVSYKPQ- 68
Query: 238 DVLFPHLTVKETLTYAALLR--LPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRG 295
++ T LL + T + ++ L +E+ D V
Sbjct: 69 -----YIKADYEGTVRDLLSSITKDFYTHPYFK---TEIAKPLQIEQILD-----REVPE 115
Query: 296 VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIH 353
+SGGE +RV I + + + LDEP++ LD L ++++ AE KT H
Sbjct: 116 LSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEH 174
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 70.1 bits (172), Expect = 2e-13
Identities = 56/197 (28%), Positives = 96/197 (48%), Gaps = 17/197 (8%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLL-------SGRLMEPTVGGSITYNDHPYS 224
+L ++ SVN GE + L GPSGSGK+TLL L G+++ G +
Sbjct: 26 VLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPR 85
Query: 225 KSL---KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE 281
+ L ++ IG+V+Q + P ++ L A L + ++ +A D++ L L
Sbjct: 86 EVLEVRRTTIGYVSQFLRVIPRVS---ALDVVAEPLLARGVPREVARAKAADLLTRLNLP 142
Query: 282 RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI 341
++ +F SGGE++RV I I++ +L LDEPT+ LD+T +V+++++
Sbjct: 143 ERLWSLAPATF----SGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREA 198
Query: 342 AEAGKTVVTTIHQPSSR 358
G +V H R
Sbjct: 199 KARGAALVGIFHDEEVR 215
|
Length = 235 |
| >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 70.8 bits (174), Expect = 2e-13
Identities = 53/192 (27%), Positives = 93/192 (48%), Gaps = 18/192 (9%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLL-------NLLSGRLMEPTV---GGSITYNDHP 222
L I + +V A +GPSG GK+TLL L + E + G +I
Sbjct: 29 LKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQD 88
Query: 223 YSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL-E 281
+ L++K+G V Q FP +++ + + + +RL L++ + ++R + + L
Sbjct: 89 IAL-LRAKVGMVFQKPTPFP-MSIYDNIAFG--VRLFEKLSRAEMDERVEWALTKAALWN 144
Query: 282 RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI 341
+D + +SGG+++R+CI I I P +L LDEP S LD + RI +++ ++
Sbjct: 145 EVKDKL--HQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITEL 202
Query: 342 AEAGKTVVTTIH 353
+ TVV H
Sbjct: 203 KQD-YTVVIVTH 213
|
Length = 260 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 68.3 bits (168), Expect = 2e-13
Identities = 54/194 (27%), Positives = 79/194 (40%), Gaps = 52/194 (26%)
Query: 180 VNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDV 239
+ PG+ L + GPSG+GK++L L+G + P G I L F+ Q
Sbjct: 24 IKPGDRLLITGPSGTGKSSLFRALAG--LWPWGSGRIGM--PEGEDLL-----FLPQRP- 73
Query: 240 LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299
P T++E L Y L SGG
Sbjct: 74 YLPLGTLREQLIYPWDDVL--------------------------------------SGG 95
Query: 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRL 359
E++R+ ++ P +FLDE TS LD + R+ Q+L+ E G TV++ H+PS
Sbjct: 96 EQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLK---ELGITVISVGHRPSLWK 152
Query: 360 FHKFDKLILLGKGS 373
FH L L G+G
Sbjct: 153 FHDR-VLDLDGEGG 165
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 70.8 bits (174), Expect = 3e-13
Identities = 64/225 (28%), Positives = 114/225 (50%), Gaps = 22/225 (9%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---- 224
E+ L + S+ G +A++G +GSGK+TLL L+G L++PT G++T + +
Sbjct: 19 ERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNG-LLQPT-SGTVTIGERVITAGKK 76
Query: 225 ----KSLKSKIGFVTQDDVLFP-HLTVKETLTYAALLRLPN-TLTKQQKEKRAIDVINEL 278
K L+ K+G V Q FP H +ET+ N ++++ +++A ++I +
Sbjct: 77 NKKLKPLRKKVGIVFQ----FPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELV 132
Query: 279 GLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQML 338
GL ++ + F +SGG+ +RV I + + P +L LDEPT+GLD +++M
Sbjct: 133 GLP--EELLARSPF--ELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMF 188
Query: 339 QDI-AEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382
+ E G T V H D+++++ KG++ G E
Sbjct: 189 YKLHKEKGLTTVLVTHSMED-AARYADQIVVMHKGTVFLQGTPRE 232
|
Length = 290 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 69.3 bits (170), Expect = 4e-13
Identities = 55/191 (28%), Positives = 95/191 (49%), Gaps = 24/191 (12%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVG-----GSITYNDHPYSKSL 227
LN ++ SV+PGE+ L+GP+G+GKTTL+++++G+ P G G P +
Sbjct: 21 LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGK-TRPQEGEVLFDGDTDLTKLPEHRIA 79
Query: 228 KSKIGFVTQDDVLFPHLTVKETLTYA--------ALLRLPNTLTKQQKEKRAIDVINEL- 278
++ IG Q +F +LTV+E L A A L + +E+R ID +
Sbjct: 80 RAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLF----ARLRAEERRRIDELLATI 135
Query: 279 GLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQML 338
GL +D + +S G+++ + IG + +P LL LDEP +G+ + ++L
Sbjct: 136 GLGDERDRLAA-----LLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELL 190
Query: 339 QDIAEAGKTVV 349
+ +A +V
Sbjct: 191 KSLAGKHSILV 201
|
Length = 249 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 70.7 bits (173), Expect = 4e-13
Identities = 70/265 (26%), Positives = 125/265 (47%), Gaps = 34/265 (12%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSI------TYNDHPYSKS 226
LN ++ V G++ ++G SG+GK+TL+ ++ L PT G I T +
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVN-LLERPTSGSVIVDGQDLTTLSNSELTK 79
Query: 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDT 286
+ +IG + Q L TV + A L L NT K + +++ +++ +GL D
Sbjct: 80 ARRQIGMIFQHFNLLSSRTVFGNV--ALPLELDNT-PKDEIKRKVTELLALVGLGDKHD- 135
Query: 287 MIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-G 345
S+ +SGG+++RV I + NP +L DE TS LD T I+++L++I G
Sbjct: 136 ----SYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLG 191
Query: 346 KTVVTTIHQPS--SRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGCSPQIAMNPAEF 403
T++ H+ R+ + ++ G L+ G SE ++ P+ + +F
Sbjct: 192 LTILLITHEMDVVKRICD---CVAVISNGELIEQGTVSEIFSH-------PKTPL-AQKF 240
Query: 404 LLDLANGNLHDVSVPSELQDRVQTE 428
+ LH +S+P + Q+R+Q
Sbjct: 241 I----RSTLH-LSIPEDYQERLQAT 260
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 69.5 bits (170), Expect = 4e-13
Identities = 59/226 (26%), Positives = 102/226 (45%), Gaps = 34/226 (15%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKI- 231
L ++G V GE+L L+GP+G+GK+TLL ++G + GSI + P +++
Sbjct: 15 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT---SGSGSIQFAGQPLEAWSATELA 71
Query: 232 ---GFVTQDDVLFPHLTVKETLTYAALLRLP--NTLTKQQKEKRAIDVINEL-GLERCQD 285
+++Q +P + LT Q +K +++N++ G D
Sbjct: 72 RHRAYLSQQQ--------------TPPFAMPVWHYLTLHQPDKTRTELLNDVAGALALDD 117
Query: 286 TMIGGSFVRGVSGGERKRV-----CIGNEIIINPS--LLFLDEPTSGLDSTTALRIVQML 338
+ G +SGGE +RV + NP+ LL LDEP + LD + ++L
Sbjct: 118 KL--GRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLL 175
Query: 339 QDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384
+ + G +V + H + L H + LL +G LL G+ E +
Sbjct: 176 SALCQQGLAIVMSSHDLNHTLRHA-HRAWLLKRGKLLASGRREEVL 220
|
Length = 248 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 71.7 bits (176), Expect = 7e-13
Identities = 65/262 (24%), Positives = 115/262 (43%), Gaps = 33/262 (12%)
Query: 136 ERPKFQTEPTLPIY-LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGS 194
K +TE + DV+Y G S +IL+ I+ ++ ++G SGS
Sbjct: 459 INKKKRTELNNLNGDIVINDVSYSY---GYGS----NILSDISLTIKMNSKTTIVGMSGS 511
Query: 195 GKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHLTVKETL 250
GK+TL LL G + G I N +L+ I ++ Q+ +F ++ E L
Sbjct: 512 GKSTLAKLLVG-FFQAR-SGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSG-SILENL 568
Query: 251 TYAALLRLPNTLTKQQKEKRAIDV------INELGLERCQDTMIGGSFVRGVSGGERKRV 304
A Q + A ++ I + L + GS +SGG+++R+
Sbjct: 569 LLGA-----KENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGS---SISGGQKQRI 620
Query: 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFD 364
+ ++ + +L LDE TS LD+ T +IV L ++ + KT++ H+ S + + D
Sbjct: 621 ALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNLQD--KTIIFVAHRLS--VAKQSD 676
Query: 365 KLILLGKGSLLYFGKASEAMAY 386
K+I+L G ++ G E +
Sbjct: 677 KIIVLDHGKIIEQGSHDELLDR 698
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 71.4 bits (175), Expect = 8e-13
Identities = 58/190 (30%), Positives = 92/190 (48%), Gaps = 29/190 (15%)
Query: 172 ILNGITGSVN----------PGEVLALMGPSGSGK-TTLLNLLSGRLMEPTVGGSITYND 220
+LN +T V+ PGE L+L+G SGSGK TT LL RL+E + GG I +N
Sbjct: 329 LLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALL--RLVE-SQGGEIIFNG 385
Query: 221 H-----PYSK--SLKSKIGFVTQDDVLFPHLTVKETLTYAAL--LRLPNTLTKQQKEKRA 271
K +L+ I F+ QD + L ++T+ + + LR+ L + R
Sbjct: 386 QRIDTLSPGKLQALRRDIQFIFQDP--YASLDPRQTVGDSIMEPLRVHGLLPGKAAAARV 443
Query: 272 IDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTA 331
++ +GL F SGG+R+R+CI + +NP ++ DE S LD +
Sbjct: 444 AWLLERVGLLPEHAWRYPHEF----SGGQRQRICIARALALNPKVIIADEAVSALDVSIR 499
Query: 332 LRIVQMLQDI 341
+I+ +L D+
Sbjct: 500 GQIINLLLDL 509
|
Length = 623 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 68.9 bits (168), Expect = 8e-13
Identities = 54/229 (23%), Positives = 102/229 (44%), Gaps = 28/229 (12%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTL---LNLLSGRLMEPTVGGSITYNDHP-YS 224
EK L ++ + V AL+GPSG GK+T LN ++ + + G ++ Y
Sbjct: 24 EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYE 83
Query: 225 K-----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG 279
L+ +G V Q FP +++ + + Y + N K+ +D + E
Sbjct: 84 PDVDVVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIHGAN--------KKDLDGVVENA 134
Query: 280 L------ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALR 333
L + D + S +SGG+++R+CI + + P ++ DEPTS LD + R
Sbjct: 135 LRSAALWDETSDRL--KSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTAR 192
Query: 334 IVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382
I ++ ++ + V+ T + + + L+G+ L+ FG+ +
Sbjct: 193 IEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGE--LIEFGQTRQ 239
|
Length = 258 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 68.5 bits (167), Expect = 9e-13
Identities = 52/194 (26%), Positives = 98/194 (50%), Gaps = 25/194 (12%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLL-------NLLSGRLMEPTV--GGSITYNDHPY 223
LN I + + AL+GPSG GK+T L +L+ G +E V G Y+++
Sbjct: 23 LNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFD 82
Query: 224 SKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER- 282
L+ KIG V Q F +++ + ++Y + K+K+ +D I E L++
Sbjct: 83 ILELRRKIGMVFQTPNPF-LMSIYDNISYGPKIH-------GTKDKKKLDEIVEQSLKKS 134
Query: 283 -----CQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQM 337
+D + + +SGG+++R+CI + I P+++ +DEPTS LD + +I ++
Sbjct: 135 ALWNEVKDKLNTNAL--SLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEEL 192
Query: 338 LQDIAEAGKTVVTT 351
+ ++ E+ ++ T
Sbjct: 193 IINLKESYTIIIVT 206
|
Length = 254 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 68.7 bits (168), Expect = 9e-13
Identities = 63/216 (29%), Positives = 103/216 (47%), Gaps = 28/216 (12%)
Query: 182 PGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY----SKSLKSKIGFVTQD 237
G+V L+G +GSGK+TLL +L GR P+ G I + P SK+ K+ ++ Q
Sbjct: 36 AGKVTGLIGHNGSGKSTLLKML-GRHQPPS-EGEILLDAQPLESWSSKAFARKVAYLPQQ 93
Query: 238 DVLFPHLTVKETLT------YAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGS 291
+TV+E + + AL R ++K + AI ++ GL +
Sbjct: 94 LPAAEGMTVRELVAIGRYPWHGALGRF--GAADREKVEEAISLV---GL-----KPLAHR 143
Query: 292 FVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA-EAGKTVVT 350
V +SGGER+R I + + L LDEPTS LD + ++ ++ ++ E G TV+
Sbjct: 144 LVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIA 203
Query: 351 TIH--QPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384
+H ++R D L+ L G ++ G +E M
Sbjct: 204 VLHDINMAARY---CDYLVALRGGEMIAQGTPAELM 236
|
Length = 265 |
| >gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 68.5 bits (168), Expect = 1e-12
Identities = 49/171 (28%), Positives = 81/171 (47%), Gaps = 24/171 (14%)
Query: 174 NGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP---YSKSLKSK 230
N + V E+++L+GP+G+GKTT+ N L+G +PT GG+I ++
Sbjct: 22 NNVNLEVREQEIVSLIGPNGAGKTTVFNCLTG-FYKPT-GGTILLRGQHIEGLPGHQIAR 79
Query: 231 IGFVT--QDDVLFPHLTVKETLTYA-------ALLR-LPNTLTKQQKEKRAIDV----IN 276
+G V Q LF +TV E L A L L T ++ E A+D +
Sbjct: 80 MGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLE 139
Query: 277 ELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLD 327
+GL + G ++ G+++R+ I ++ P +L LDEP +GL+
Sbjct: 140 RVGLLEHANRQAG-----NLAYGQQRRLEIARCMVTQPEILMLDEPAAGLN 185
|
Length = 255 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 68.2 bits (167), Expect = 2e-12
Identities = 52/181 (28%), Positives = 86/181 (47%), Gaps = 27/181 (14%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLL---NLLSGRLMEPTVGGSITYNDHPYSK 225
+K+ + GI ++ AL+GPSGSGK+T L N ++ + V G I Y ++
Sbjct: 32 KKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINR 91
Query: 226 S------LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG 279
++ IG V Q F ++ E +T+A K+K+ +D I E
Sbjct: 92 KEINVYEMRKHIGMVFQRPNPFAK-SIYENITFALERA-------GVKDKKVLDEIVETS 143
Query: 280 L------ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLD--STTA 331
L ++ +D + + +SGG+++R+CI I + P +L +DEP S LD ST
Sbjct: 144 LKQAALWDQVKDDLHKSALT--LSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQ 201
Query: 332 L 332
L
Sbjct: 202 L 202
|
Length = 267 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 68.1 bits (166), Expect = 2e-12
Identities = 68/256 (26%), Positives = 121/256 (47%), Gaps = 26/256 (10%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVG----GSITYNDHPYSKSLK 228
L I + GE + ++G +GSGK+TL L+G L+ P G I D + ++
Sbjct: 18 LENINLVIKKGEYIGIIGKNGSGKSTLALHLNG-LLRPQKGKVLVSGIDTGDFSKLQGIR 76
Query: 229 SKIGFVTQD-DVLFPHLTVKETLTYAAL-LRLPNTLTKQQKEKRAIDVINELGLERCQDT 286
+G V Q+ + F TV+E L + L LP + KR + E+GLE+ +
Sbjct: 77 KLVGIVFQNPETQFVGRTVEEDLAFGPENLCLPPI----EIRKRVDRALAEIGLEKYRHR 132
Query: 287 MIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGK 346
+ +SGG+ + V + + + P L DE TS LD + + +++ ++ + E GK
Sbjct: 133 S-----PKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGK 187
Query: 347 TVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFS--SIGCSPQIAMNPAEFL 404
T+V H H D++I++ +G ++ G+ ++ S ++G +P + AE L
Sbjct: 188 TIVYITHNLEE--LHDADRIIVMDRGKIVLEGEPENVLSDVSLQTLGLTPPSLIELAENL 245
Query: 405 LDLANGNLHDVSVPSE 420
+H V +P E
Sbjct: 246 ------KMHGVVIPWE 255
|
Length = 274 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.3 bits (164), Expect = 2e-12
Identities = 44/177 (24%), Positives = 92/177 (51%), Gaps = 14/177 (7%)
Query: 185 VLALMGPSGSGKTTLL---NLLSGRLMEPTVGGSITYNDHP-YSK-----SLKSKIGFVT 235
V A++GPSG GK+T+L N + + V G I +D Y + S++ ++G V
Sbjct: 32 VTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVF 91
Query: 236 QDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL-ERCQDTMIGGSFVR 294
Q FP +++ + + A +L + + + ++ + + L + +D + +
Sbjct: 92 QKPNPFPAMSIYDNVI--AGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAME- 148
Query: 295 GVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTT 351
+SGG+++R+CI I + P ++ +DEP S LD + L+I ++++++ E ++ T
Sbjct: 149 -LSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVT 204
|
Length = 252 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.9 bits (166), Expect = 2e-12
Identities = 60/242 (24%), Positives = 115/242 (47%), Gaps = 30/242 (12%)
Query: 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME 209
+ F +V+++ S+ L ++ ++ G+ +++G +GSGK+T+ L+ G +E
Sbjct: 8 IVFKNVSFQY------QSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIG--IE 59
Query: 210 PTVGGSITYNDHPYS----KSLKSKIGFVTQD-DVLFPHLTVKETLTYAALLRLPNTLTK 264
G I YN+ + + L+ IG V Q+ D F VK Y L N
Sbjct: 60 KVKSGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVK----YDVAFGLENHAVP 115
Query: 265 QQKEKRAI-DVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPT 323
+ R + + + ++ + D +SGG+++RV I + +NPS++ LDE T
Sbjct: 116 YDEMHRRVSEALKQVDMLERAD-----YEPNALSGGQKQRVAIAGVLALNPSVIILDEAT 170
Query: 324 SGLD---STTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380
S LD L +V+ ++ +E T+++ H S + + D +I++ KG++ G
Sbjct: 171 SMLDPDARQNLLDLVRKVK--SEHNITIISITHDLSEAM--EADHVIVMNKGTVYKEGTP 226
Query: 381 SE 382
+E
Sbjct: 227 TE 228
|
Length = 269 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 66.8 bits (164), Expect = 2e-12
Identities = 55/220 (25%), Positives = 101/220 (45%), Gaps = 21/220 (9%)
Query: 160 ILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYN 219
IL E L ++ V GE + L+G +G+GK+TLL LL+G + P G++T
Sbjct: 25 ILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAG-IYPPD-SGTVTVR 82
Query: 220 DHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG 279
+ S +G + P LT +E + L L++++ +++ ++I
Sbjct: 83 -----GRVSSLLGLGGGFN---PELTGRENIYLNGRL---LGLSRKEIDEKIDEIIEFSE 131
Query: 280 LERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQ 339
L D V+ S G + R+ + P +L +DE + D+ + + L+
Sbjct: 132 LGDFIDLP-----VKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLR 186
Query: 340 DIAEAGKTVVTTIHQPSSRLFHKF-DKLILLGKGSLLYFG 378
++ + GKTV+ H PSS + D+ ++L KG + + G
Sbjct: 187 ELLKQGKTVILVSHDPSS--IKRLCDRALVLEKGKIRFDG 224
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.0 bits (163), Expect = 3e-12
Identities = 56/225 (24%), Positives = 111/225 (49%), Gaps = 25/225 (11%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLL-------NLLSGRLMEPTVGGSITYNDHPYS 224
+L I ++ A++GPSG GK+TLL +++SG +E G + N++ YS
Sbjct: 19 VLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLE---GAVLLDNENIYS 75
Query: 225 KSL-----KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG 279
+L + ++G V Q FP ++ + + + R+ T + + ++ + +
Sbjct: 76 PNLDVVNLRKRVGMVFQQPNPFPK-SIFDNVAFGP--RMLGTTAQSRLDEVVEKSLRQAA 132
Query: 280 L-ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQML 338
L + +D + +SGG+++R+CI + I P ++ +DEP S LD + +RI +++
Sbjct: 133 LWDEVKDNLHKSGL--ALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELM 190
Query: 339 QDIAEAGK-TVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382
Q++ + +VT Q ++R D L G L+ +G+ E
Sbjct: 191 QELKQNYTIAIVTHNMQQAAR---ASDWTGFLLTGDLVEYGRTGE 232
|
Length = 251 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.3 bits (164), Expect = 3e-12
Identities = 52/191 (27%), Positives = 95/191 (49%), Gaps = 13/191 (6%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY---SK 225
+ + +T + G A++GP+G GK+TLL LS RLM P G +H SK
Sbjct: 19 KYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLS-RLMTPAHGHVWLDGEHIQHYASK 77
Query: 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNT--LTKQQKEKRAIDVINELGLERC 283
+ +IG + Q+ +TV+E + R P+ T+ +KE + + + ++
Sbjct: 78 EVARRIGLLAQNATTPGDITVQELVARG---RYPHQPLFTRWRKEDE--EAVTK-AMQAT 131
Query: 284 QDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI-A 342
T + V +SGG+R+R I + +++ LDEPT+ LD + + ++++L ++
Sbjct: 132 GITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNR 191
Query: 343 EAGKTVVTTIH 353
E G T+ +H
Sbjct: 192 EKGYTLAAVLH 202
|
Length = 265 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.4 bits (165), Expect = 3e-12
Identities = 53/194 (27%), Positives = 101/194 (52%), Gaps = 16/194 (8%)
Query: 166 SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK 225
+EK LN ++ V GE L+++G +GSGK+T + L+ G L+E G I D +
Sbjct: 16 EDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDG-LLEAESGQIIIDGDLLTEE 74
Query: 226 S---LKSKIGFVTQD-DVLFPHLTVKETLTYAALLRLPNT-LTKQQKEKRAIDVINELGL 280
+ ++ KIG V Q+ D F TV++ + + L N + ++ ++R + + +G+
Sbjct: 75 NVWDIRHKIGMVFQNPDNQFVGATVEDDVAFG----LENKGIPHEEMKERVNEALELVGM 130
Query: 281 ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQD 340
+ ++ +SGG+++RV I + + P ++ LDE TS LD L +++ ++
Sbjct: 131 QDFKEREPAR-----LSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKG 185
Query: 341 IAEA-GKTVVTTIH 353
I + TV++ H
Sbjct: 186 IRDDYQMTVISITH 199
|
Length = 279 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.6 bits (165), Expect = 3e-12
Identities = 58/216 (26%), Positives = 101/216 (46%), Gaps = 25/216 (11%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSG--RLMEPTVGGSITYNDHPYSKSLKSK 230
L + +V G + AL+G +GSGK+TL L G RL G I+ P ++L+
Sbjct: 23 LRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLAS----GKISILGQPTRQALQKN 78
Query: 231 -IGFVTQD---DVLFPHLTVKETLT----YAALLRLPNTLTKQQKEKRAIDVINELGLER 282
+ +V Q D FP L + + LR K++ + + + +
Sbjct: 79 LVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRA----KKRDRQIVTAALARVDMVE 134
Query: 283 CQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA 342
+ IG +SGG++KRV + I ++ LDEP +G+D T RI+ +L+++
Sbjct: 135 FRHRQIGE-----LSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELR 189
Query: 343 EAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378
+ GKT++ + H S +F ++ KG++L G
Sbjct: 190 DEGKTMLVSTHNLGS--VTEFCDYTVMVKGTVLASG 223
|
Length = 272 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.2 bits (164), Expect = 3e-12
Identities = 60/234 (25%), Positives = 103/234 (44%), Gaps = 34/234 (14%)
Query: 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLL---NLLSGRLMEPTVGGSITYND-HPY 223
K IL I + EV A +GPSG GK+T L N ++ + V G + + Y
Sbjct: 16 GSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVY 75
Query: 224 SKS-----LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINE- 277
S L++K+G V Q FP ++ + + Y L K K+ +D I E
Sbjct: 76 SVDTNVVLLRAKVGMVFQKPNPFPK-SIYDNVAYGP------KLHGLAKNKKKLDEIVEK 128
Query: 278 ----LGL-----ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDS 328
+GL +R +D+ +SGG+++R+CI I + P++L +DEP S LD
Sbjct: 129 SLTSVGLWEELGDRLKDSAFE------LSGGQQQRLCIARAIAVKPTMLLMDEPCSALDP 182
Query: 329 TTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382
I ++Q++ + +V T ++ D++ G ++ + E
Sbjct: 183 VATNVIENLIQELKKNFTIIVVTHSMKQAKKVS--DRVAFFQSGRIVEYNTTQE 234
|
Length = 251 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.2 bits (164), Expect = 3e-12
Identities = 57/234 (24%), Positives = 99/234 (42%), Gaps = 27/234 (11%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP------TVGGSITYNDHPYSK 225
IL ++ + PG V AL+G +G+GK+TLL L+G L V G +T N P +
Sbjct: 16 ILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAA 75
Query: 226 SLKSKIG-----FVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL 280
++ F + +E + L R P+ R ++ + L
Sbjct: 76 IDAPRLARLRAVLPQAAQPAFA-FSAREIVL---LGRYPHARRAGALTHRDGEIAWQ-AL 130
Query: 281 ERCQDTMIGGSFVRGVSGGERKRVCIG---------NEIIINPSLLFLDEPTSGLDSTTA 331
T + G V +SGGE RV ++ P L LDEPT+ LD
Sbjct: 131 ALAGATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQ 190
Query: 332 LRIVQMLQDIA-EAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384
R++ ++ +A + V+ +H P+ H D++ +L G+++ G ++ +
Sbjct: 191 HRLLDTVRRLARDWNLGVLAIVHDPNLAARHA-DRIAMLADGAIVAHGAPADVL 243
|
Length = 272 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 66.0 bits (162), Expect = 5e-12
Identities = 52/191 (27%), Positives = 98/191 (51%), Gaps = 18/191 (9%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKI- 231
LN ++ V+PGE+ ++GP+G+GKTT++++++G+ P GS+ + + + +I
Sbjct: 18 LNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGK-TRPDE-GSVLFGGTDLTGLPEHQIA 75
Query: 232 ----GFVTQDDVLFPHLTVKETL--TYAALLRLPNTLTKQ--QKEKRAID-VINELGLER 282
G Q +F +LTV E L + +L + +EK I+ V+ +GL
Sbjct: 76 RAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLAD 135
Query: 283 CQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA 342
D + G +S G+++ + IG ++ +P LL LDEP +G+ + ++L+ +A
Sbjct: 136 EADRLAG-----LLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLA 190
Query: 343 EAGKTVVTTIH 353
+VV H
Sbjct: 191 G-KHSVVVVEH 200
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 66.6 bits (163), Expect = 6e-12
Identities = 63/223 (28%), Positives = 113/223 (50%), Gaps = 32/223 (14%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS----LK 228
L ++ SV GE +A++G +GSGK+TL LL+G L+ P G+IT S+ ++
Sbjct: 23 LKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNG-LLLPE-AGTITVGGMVLSEETVWDVR 80
Query: 229 SKIGFVTQD-DVLFPHLTVKETLTYAALLRLPNT-LTKQQKEKRAIDVINELGLERCQDT 286
++G V Q+ D F TV++ + + L N + +++ +R + ++G+E
Sbjct: 81 RQVGMVFQNPDNQFVGATVQDDVAFG----LENIGVPREEMVERVDQALRQVGME----- 131
Query: 287 MIGGSFVR----GVSGGERKRVCIGNEIIINPSLLFLDEPTSGLD---STTALRIVQMLQ 339
F+ +SGG+++RV I + + P ++ LDE TS LD L V+ L+
Sbjct: 132 ----DFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLK 187
Query: 340 DIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382
+ + G TV++ H + D++I++ KG +L G E
Sbjct: 188 E--QKGITVLSITHDLDEAA--QADRVIVMNKGEILEEGTPEE 226
|
Length = 279 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 66.6 bits (162), Expect = 6e-12
Identities = 57/225 (25%), Positives = 106/225 (47%), Gaps = 18/225 (8%)
Query: 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP--YSK 225
+++ +L G+ + V L+G +G GK+TL LSG L+ P G++ + P YSK
Sbjct: 12 QDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSG-LLRPQ-KGAVLWQGKPLDYSK 69
Query: 226 ----SLKSKIGFVTQD-DVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL 280
+L+ ++ V QD + + + + ++ L N + + R +D L L
Sbjct: 70 RGLLALRQQVATVFQDPEQQIFYTDIDSDIAFS----LRNLGVPEAEITRRVD--EALTL 123
Query: 281 ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQD 340
Q ++ +S G++KRV I +++ L LDEPT+GLD +++ +++
Sbjct: 124 VDAQH--FRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRR 181
Query: 341 IAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385
I G V+ + H ++ D + +L +G +L G E A
Sbjct: 182 IVAQGNHVIISSHD-IDLIYEISDAVYVLRQGQILTHGAPGEVFA 225
|
Length = 271 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.3 bits (161), Expect = 8e-12
Identities = 55/196 (28%), Positives = 95/196 (48%), Gaps = 24/196 (12%)
Query: 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLL------------SGRLMEPTVGGSIT 217
K +L+ ++ V +LMGP+GSGKTT L L SG ++ +GG
Sbjct: 34 KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVL---LGGRSI 90
Query: 218 YNDHPYSKSL--KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVI 275
+N Y L + ++G + Q FP + L A +R + +++ A +
Sbjct: 91 FN---YRDVLEFRRRVGMLFQRPNPFPMSIMDNVL---AGVRAHKLVPRKEFRGVAQARL 144
Query: 276 NELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIV 335
E+GL + S R +SGG+++ +C+ + +NP +L LDEPTS LD TT +I
Sbjct: 145 TEVGLWDAVKDRLSDSPFR-LSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIE 203
Query: 336 QMLQDIAEAGKTVVTT 351
+ ++ +A+ ++ T
Sbjct: 204 EFIRSLADRLTVIIVT 219
|
Length = 276 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 65.9 bits (161), Expect = 9e-12
Identities = 53/200 (26%), Positives = 93/200 (46%), Gaps = 28/200 (14%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPT-----VGGSITYNDHP- 222
EK L + + V A +GPSG GK+T L L+ M T V G IT +
Sbjct: 31 EKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLN--RMNDTIDGCRVTGKITLDGEDI 88
Query: 223 YSKS-----LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINE 277
Y L++++G V Q FP ++ E + Y + + L + + E +D I E
Sbjct: 89 YDPRLDVVELRARVGMVFQKPNPFPK-SIYENVAYGPRI---HGLARSKAE---LDEIVE 141
Query: 278 LGLERC------QDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTA 331
L + +D + G+SGG+++R+CI I ++P ++ +DEP S LD
Sbjct: 142 TSLRKAGLWEEVKDRL--HEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIAT 199
Query: 332 LRIVQMLQDIAEAGKTVVTT 351
++ +++ ++ + V+ T
Sbjct: 200 AKVEELIDELRQNYTIVIVT 219
|
Length = 267 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 65.6 bits (160), Expect = 9e-12
Identities = 51/209 (24%), Positives = 96/209 (45%), Gaps = 42/209 (20%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLL---NLLSGRLMEPTVGGSITYNDHP-YSK--- 225
+ + + ++ A +GPSG GK+T+L N L+ + V G +T++ Y+
Sbjct: 26 VKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVD 85
Query: 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKE------KRAI----- 272
++ +IG V Q FP ++ + + Y A + N E ++A
Sbjct: 86 PVEVRRRIGMVFQKPNPFPK-SIYDNIAYGARI---NGYKGDMDELVERSLRQAALWDEV 141
Query: 273 -DVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTA 331
D + + GL +SGG+++R+CI I + P ++ +DEP S LD +
Sbjct: 142 KDKLKQSGL--------------SLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPIST 187
Query: 332 LRIVQMLQDIAEAGKTVVTTIH--QPSSR 358
LRI +++ ++ E T++ H Q ++R
Sbjct: 188 LRIEELMHELKEQ-YTIIIVTHNMQQAAR 215
|
Length = 264 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 66.0 bits (161), Expect = 9e-12
Identities = 52/213 (24%), Positives = 112/213 (52%), Gaps = 14/213 (6%)
Query: 179 SVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---KSLKS-KIGFV 234
++ G+ LA++G +GSGK+TL +L+G ++EPT G + +DHP S +S +I +
Sbjct: 35 TLREGQTLAIIGENGSGKSTLAKMLAG-MIEPT-SGELLIDDHPLHFGDYSYRSQRIRMI 92
Query: 235 TQD--DVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSF 292
QD L P + + L + LRL L +Q+EK+ I+ + ++GL +
Sbjct: 93 FQDPSTSLNPRQRISQILDFP--LRLNTDLEPEQREKQIIETLRQVGLLPDH----ASYY 146
Query: 293 VRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTI 352
++ G+++R+ + +I+ P ++ DE + LD + +++ ++ ++ E +
Sbjct: 147 PHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYV 206
Query: 353 HQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385
Q + H D+++++ +G ++ G ++ +A
Sbjct: 207 TQHLGMMKHISDQVLVMHQGEVVERGSTADVLA 239
|
Length = 267 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 65.8 bits (160), Expect = 1e-11
Identities = 61/253 (24%), Positives = 111/253 (43%), Gaps = 48/253 (18%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLL---NLLSGRLMEPTVGGSITY------N 219
EK +N I+ + V AL+GPSG GK+T L N ++ + G I Y +
Sbjct: 33 EKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILD 92
Query: 220 DHPYSKSLKSKIGFVTQDDVLFP---HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVIN 276
+ +L+ +IG V Q FP + + L YA ++ K +D I
Sbjct: 93 SNINVVNLRREIGMVFQKPNPFPKSIYNNITHALKYAG-----------ERRKSVLDEIV 141
Query: 277 ELGLERC------QDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTT 330
E L + +D + + +SGG+++R+CI + + P++L LDEP S LD +
Sbjct: 142 EESLTKAALWDEVKDRLHSSAL--SLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPIS 199
Query: 331 ALRIVQMLQDIAEAGKTVVTTIH-QPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSS 389
+I +++ ++ E ++ T + Q + R+ D+ G L+ + +
Sbjct: 200 NAKIEELITELKEEYSIIIVTHNMQQALRV---SDRTAFFLNGDLVEYDQ---------- 246
Query: 390 IGCSPQIAMNPAE 402
+ QI +P +
Sbjct: 247 ---TEQIFTSPKQ 256
|
Length = 268 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 65.4 bits (159), Expect = 1e-11
Identities = 51/198 (25%), Positives = 98/198 (49%), Gaps = 16/198 (8%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLS--GRLMEPT-VGGSI------TYNDHPY 223
+ GI+ + +V A++GPSG GK+T + L+ L P V G + Y+
Sbjct: 23 IEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRIN 82
Query: 224 SKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL-ER 282
L+ +IG V Q FP +++ E + Y +R+ L + ++ + L +
Sbjct: 83 INRLRRQIGMVFQRPNPFP-MSIYENVAYG--VRISAKLPQADLDEIVESALKGAALWQE 139
Query: 283 CQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI- 341
+D + + G+SGG+++R+CI + I P +L +DEP S LD +++ +++ +
Sbjct: 140 VKDKLNKSAL--GLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLR 197
Query: 342 AEAGKTVVTTIHQPSSRL 359
+E +VT Q ++R+
Sbjct: 198 SELTIAIVTHNMQQATRV 215
|
Length = 259 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 67.0 bits (164), Expect = 2e-11
Identities = 51/189 (26%), Positives = 99/189 (52%), Gaps = 21/189 (11%)
Query: 168 EEKDILNGITGSVNPGEVLALMGPSGSGKT-TLLNLLSGRLM-EPTV----------GGS 215
+ ++N ++ + GE LAL+G SGSGK+ T L++L RL+ P V G S
Sbjct: 20 TVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSIL--RLLPSPPVVYPSGDIRFHGES 77
Query: 216 ITYNDHPYSKSLK-SKIGFVTQDDV--LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAI 272
+ + + ++ +KI + Q+ + L P T+++ L +L L + ++ +
Sbjct: 78 LLHASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQL--YEVLSLHRGMRREAARGEIL 135
Query: 273 DVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTAL 332
+ ++ +G+ + + + +SGGER+RV I ++ P LL DEPT+ LD +
Sbjct: 136 NCLDRVGIRQAAKRL--TDYPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQA 193
Query: 333 RIVQMLQDI 341
+I+Q+L+++
Sbjct: 194 QILQLLREL 202
|
Length = 529 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.2 bits (159), Expect = 2e-11
Identities = 50/190 (26%), Positives = 89/190 (46%), Gaps = 18/190 (9%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVG----GSITYNDHPYSKSLK 228
L + ++ G A +G +GSGK+T++ LL+G L PT G +K +K
Sbjct: 23 LFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNG-LHVPTQGSVRVDDTLITSTSKNKDIK 81
Query: 229 S---KIGFVTQDDVLFPHLTVKETLTYAALLRLPNT--LTKQQKEKRAIDVINELGLERC 283
K+G V Q FP + E + P +++++ E A + + +G+
Sbjct: 82 QIRKKVGLVFQ----FPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGIS-- 135
Query: 284 QDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE 343
+ F +SGG+ +RV I + + P +L LDEPT+GLD ++ + + + +
Sbjct: 136 ESLFEKNPF--ELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQ 193
Query: 344 AGKTVVTTIH 353
+G T+V H
Sbjct: 194 SGMTIVLVTH 203
|
Length = 280 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.2 bits (159), Expect = 2e-11
Identities = 63/227 (27%), Positives = 113/227 (49%), Gaps = 29/227 (12%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP-------TVGGSITYNDH 221
+K LN I+ S+ G AL+G +GSGK+T+ L++G L+ TV G IT
Sbjct: 19 KKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDG-ITLT-- 75
Query: 222 PYSKSL---KSKIGFVTQD-DVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAI-DVIN 276
+K++ + K+G V Q+ D F TV + + + L N + + + + DV+
Sbjct: 76 --AKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFG----LENRAVPRPEMIKIVRDVLA 129
Query: 277 ELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQ 336
++G+ D S +SGG+++RV I + + P ++ LDE TS LD +I++
Sbjct: 130 DVGMLDYID-----SEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILK 184
Query: 337 MLQDIA-EAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382
+++ + + TV++ H + D++++L G LL G E
Sbjct: 185 LIRKLKKKNNLTVISITHDIDEA--NMADQVLVLDDGKLLAQGSPVE 229
|
Length = 282 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.5 bits (163), Expect = 2e-11
Identities = 52/179 (29%), Positives = 89/179 (49%), Gaps = 21/179 (11%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS-----KSL 227
L+ I+ G+V ALMG +G+GK+TLL +LSG +P GSI + +L
Sbjct: 20 LDDISFDCRAGQVHALMGENGAGKSTLLKILSG-NYQPD-AGSILIDGQEMRFASTTAAL 77
Query: 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNT---LTKQQKEKRAIDVINELGLERCQ 284
+ + + Q+ L P +TV E L L +LP+ + ++ A + + LG++
Sbjct: 78 AAGVAIIYQELHLVPEMTVAENLY---LGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDP 134
Query: 285 DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDS--TTAL-RIVQMLQD 340
DT ++ +S G+R+ V I + N ++ DEPTS L + L R+++ L+
Sbjct: 135 DTP-----LKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRA 188
|
Length = 501 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 63.5 bits (155), Expect = 3e-11
Identities = 48/177 (27%), Positives = 85/177 (48%), Gaps = 15/177 (8%)
Query: 175 GITGSVNPGEVLALMGPSGSGKTT----LLNLLSGRLMEPTVGGSITYNDHPYSK-SLKS 229
+ S+ GEVLAL+G SGSGK+ +L LL L + G I + P S++
Sbjct: 4 DLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQ--TSGEILLDGRPLLPLSIRG 61
Query: 230 K-IGFVTQD--DVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDT 286
+ I + Q+ P T+ LR L+KQ + ++ + +GL ++
Sbjct: 62 RHIATIMQNPRTAFNPLFTMGNHAIET--LRSLGKLSKQAR-ALILEALEAVGLPDPEEV 118
Query: 287 MIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE 343
+ + +SGG +RV I +++ P L DEPT+ LD R++++L+++ +
Sbjct: 119 L--KKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQ 173
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 66.6 bits (162), Expect = 4e-11
Identities = 57/179 (31%), Positives = 84/179 (46%), Gaps = 17/179 (9%)
Query: 180 VNPGEVLALMGPSGSGKTTLLNLLSGRLM----EPTVGG-SITYNDHPYSKSLKSKIGFV 234
V PGE L+G +G+GKTT +L+G + TV G SI N +++ G+
Sbjct: 1962 VRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNM----GYC 2017
Query: 235 TQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVR 294
Q D + LT +E L A LR + ++ EK A I LGL D + G
Sbjct: 2018 PQFDAIDDLLTGREHLYLYARLR---GVPAEEIEKVANWSIQSLGLSLYADRLAGT---- 2070
Query: 295 GVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIH 353
SGG ++++ +I P L+ LDEPT+G+D + + I G+ VV T H
Sbjct: 2071 -YSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSH 2128
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 64.2 bits (157), Expect = 1e-10
Identities = 59/218 (27%), Positives = 97/218 (44%), Gaps = 53/218 (24%)
Query: 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKS 229
K+IL I+ S PG + ++G +G+GK+TLL +++G D ++ +
Sbjct: 18 KEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGV-------------DKEFNGEARP 64
Query: 230 ----KIGFVTQDDVLFPHLTVKETL------TYAALLRL---------PNT-----LTKQ 265
K+G++ Q+ L P TV+E + AL R P+ L +Q
Sbjct: 65 APGIKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQ 124
Query: 266 QKEKRAIDVINELGLE----------RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPS 315
+ + ID + L+ RC + V +SGGER+RV + ++ P
Sbjct: 125 AELQEIIDAADAWDLDRKLEIAMDALRCPP---WDADVTKLSGGERRRVALCRLLLSKPD 181
Query: 316 LLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIH 353
+L LDEPT+ LD+ + + Q LQ+ TVV H
Sbjct: 182 MLLLDEPTNHLDAESVAWLEQHLQEYP---GTVVAVTH 216
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.4 bits (152), Expect = 1e-10
Identities = 52/188 (27%), Positives = 93/188 (49%), Gaps = 19/188 (10%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS----LK 228
L G++ S+ G AL+GP+G+GK+TLL L+G + G + + ++
Sbjct: 21 LKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNG--IYLPQRGRVKVMGREVNAENEKWVR 78
Query: 229 SKIGFVTQD--DVLFPHLTVKETLTYAALLRLPNT-LTKQQKEKRAIDVINELGLERCQD 285
SK+G V QD D +F TV + + + + N L K + E+R + + + + +D
Sbjct: 79 SKVGLVFQDPDDQVFS-STVWDDVAFGPV----NMGLDKDEVERRVEEALKAVRMWDFRD 133
Query: 286 TMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAG 345
+S G++KRV I + ++P ++ LDEP + LD ++++L + G
Sbjct: 134 KP-----PYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQG 188
Query: 346 KTVVTTIH 353
KTV+ H
Sbjct: 189 KTVIVATH 196
|
Length = 274 |
| >gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Score = 62.1 bits (151), Expect = 2e-10
Identities = 54/204 (26%), Positives = 94/204 (46%), Gaps = 18/204 (8%)
Query: 159 VILKGMTSSE-EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSIT 217
V ++G++ + + I + I+ +V G++ A+MGPSG GKTTLL L+ G++ G I
Sbjct: 8 VDMRGVSFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQI--APDHGEIL 65
Query: 218 YNDH---PYSKS----LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKR 270
++ S+S ++ ++ + Q LF + V + + Y LR L
Sbjct: 66 FDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYP--LREHTQLPAPLLHST 123
Query: 271 AIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTT 330
+ + +GL M +SGG +R + I + P L+ DEP G D T
Sbjct: 124 VMMKLEAVGLRGAAKLMPS-----ELSGGMARRAALARAIALEPDLIMFDEPFVGQDPIT 178
Query: 331 ALRIVQMLQDIAEA-GKTVVTTIH 353
+V+++ ++ A G T V H
Sbjct: 179 MGVLVKLISELNSALGVTCVVVSH 202
|
Length = 269 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.7 bits (150), Expect = 2e-10
Identities = 53/200 (26%), Positives = 96/200 (48%), Gaps = 26/200 (13%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLL-------NLLSGRLMEPTV---GGSITY 218
+ L+ I+ +V AL+GPSG GK+T L +L+ G +E + G +I Y
Sbjct: 18 DFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENI-Y 76
Query: 219 NDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL 278
+ H L+ ++G V Q FP ++ E + Y LR+ K +R +
Sbjct: 77 DPHVDVVELRRRVGMVFQKPNPFPK-SIFENVAYG--LRVNGVKDKAYLAERVERSLRHA 133
Query: 279 GL-----ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALR 333
L +R ++ +G +SGG+++R+CI + + P +L +DEP S LD +
Sbjct: 134 ALWDEVKDRLHESALG------LSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQK 187
Query: 334 IVQMLQDIAEAGKTVVTTIH 353
I +++ ++ +A T++ H
Sbjct: 188 IEELIHEL-KARYTIIIVTH 206
|
Length = 253 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 63.9 bits (155), Expect = 3e-10
Identities = 46/174 (26%), Positives = 90/174 (51%), Gaps = 14/174 (8%)
Query: 184 EVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL---KSKIGFVTQDDVL 240
++ A +G +G+GKTT L++L+G L P G++ +L + +G Q ++L
Sbjct: 957 QITAFLGHNGAGKTTTLSILTGLL--PPTSGTVLVGGKDIETNLDAVRQSLGMCPQHNIL 1014
Query: 241 FPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGE 300
F HLTV E + + A L+ + + Q E A+ + + GL ++ + +SGG
Sbjct: 1015 FHHLTVAEHILFYAQLK-GRSWEEAQLEMEAM--LEDTGLHHKRNEE-----AQDLSGGM 1066
Query: 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQ 354
++++ + + + ++ LDEPTSG+D + I +L +G+T++ + H
Sbjct: 1067 QRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKY-RSGRTIIMSTHH 1119
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.8 bits (150), Expect = 3e-10
Identities = 53/195 (27%), Positives = 88/195 (45%), Gaps = 34/195 (17%)
Query: 185 VLALMGPSGSGKTTLLNLL------------SGRLMEPTVGGSITYNDHPYSKSLKSKIG 232
V A++GPSG GK+T L + +G LM G Y L+ KIG
Sbjct: 67 VTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALM---FDGEDIYGKFTDEVLLRKKIG 123
Query: 233 FVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC------QDT 286
V Q FP ++ + + Y L +K+ ++ I E L + D
Sbjct: 124 MVFQKPNPFPK-SIFDNIAYGPRLH-------GINDKKQLEEIVEKSLRKAALWDEVSDR 175
Query: 287 MIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGK 346
+ + G+SGG+++R+C+ + + P +L LDEPTS LD +I ++Q++
Sbjct: 176 LDKNAL--GLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQEL-RGSY 232
Query: 347 TVVTTIH--QPSSRL 359
T++ H Q +SR+
Sbjct: 233 TIMIVTHNMQQASRV 247
|
Length = 286 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 62.9 bits (153), Expect = 3e-10
Identities = 53/188 (28%), Positives = 87/188 (46%), Gaps = 10/188 (5%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY-----SKSL 227
L+GI V PGE + L G +G+GK+TL+ +LSG T G I ++ P +
Sbjct: 17 LDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTE 76
Query: 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTK-QQKEKRAIDVINELGLERCQDT 286
++ I + Q+ L P L+V E + + LP RA +++ EL L+ T
Sbjct: 77 RAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVT 136
Query: 287 MIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGK 346
G + GG+++ V I + LL LDEP+S L ++ +++D+ G
Sbjct: 137 RPVGDY----GGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGV 192
Query: 347 TVVTTIHQ 354
V H+
Sbjct: 193 ACVYISHK 200
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.6 bits (149), Expect = 3e-10
Identities = 51/193 (26%), Positives = 91/193 (47%), Gaps = 30/193 (15%)
Query: 184 EVLALMGPSGSGKTTLL---NLLSGRLMEPTVGGSITYNDHPY------SKSLKSKIGFV 234
+++A +GPSG GK+TLL N ++ + V G + Y D S L+ ++G V
Sbjct: 47 KIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMV 106
Query: 235 TQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC------QDTMI 288
Q FP ++ E + +A + K +D + E L R +D +
Sbjct: 107 FQRPNPFPK-SIYENIAFAP---------RANGYKGNLDELVEDSLRRAAIWEEVKDKLK 156
Query: 289 GGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTV 348
+SGG+++R+CI I + P +L +DEP S LD + ++ ++ ++ E T+
Sbjct: 157 EKG--TALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQ-YTI 213
Query: 349 VTTIH--QPSSRL 359
+ H Q +SR+
Sbjct: 214 IMVTHNMQQASRV 226
|
Length = 274 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 63.1 bits (154), Expect = 3e-10
Identities = 57/200 (28%), Positives = 86/200 (43%), Gaps = 51/200 (25%)
Query: 180 VNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP----------------Y 223
PG+V+ ++GP+G GK+T L +L+G L P +G Y D P Y
Sbjct: 97 PRPGKVVGILGPNGIGKSTALKILAGELK-PNLG---RYEDPPSWDEVIKRFRGTELQNY 152
Query: 224 SKSLKS-------KIGFVTQDDVLFPHL---TVKETLTYAALLRLPNTLTKQQKEKRAID 273
K L K +V L P + V E L K + + +
Sbjct: 153 FKKLYEGELRAVHKPQYVD----LIPKVVKGKVGELLK------------KVDERGKFDE 196
Query: 274 VINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALR 333
V+ LGLE D V +SGGE +RV I ++ + + F DEP+S LD L
Sbjct: 197 VVERLGLENVLDRD-----VSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLN 251
Query: 334 IVQMLQDIAEAGKTVVTTIH 353
++++++AE GK V+ H
Sbjct: 252 AARVIRELAEDGKYVIVVEH 271
|
Length = 591 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.4 bits (149), Expect = 3e-10
Identities = 50/184 (27%), Positives = 93/184 (50%), Gaps = 27/184 (14%)
Query: 183 GEVLALMGPSGSGKTTLLNLLS--GRLMEP-TVGGSITYN-DHPYSKSL-----KSKIGF 233
G+V AL+GPSG GK+T+L L+ L+E ++ G + ++ Y + + +IG
Sbjct: 39 GKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGM 98
Query: 234 VTQDDVLFPHLTVKETLTYAALLRLP------NTLTKQQKEKRAIDVINELGLERCQDTM 287
V Q FP ++ E + + A R+ + L ++ K A+ + C+D +
Sbjct: 99 VFQQPNPFPK-SIYENIAFGA--RINGYTGDMDELVERSLRKAAV-------WDECKDKL 148
Query: 288 IGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKT 347
+ +SGG+++R+CI I I P ++ +DEP S LD + L+I + + ++ +
Sbjct: 149 NESGY--SLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTI 206
Query: 348 VVTT 351
V+ T
Sbjct: 207 VIVT 210
|
Length = 269 |
| >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 3e-10
Identities = 53/190 (27%), Positives = 93/190 (48%), Gaps = 20/190 (10%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228
E+ +LN + + G+ +A++G SG GK+TLL LL+G +E G + P +++ +
Sbjct: 24 ERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAG--LETPSAGELLAGTAPLAEA-R 80
Query: 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL-ERCQDTM 287
+ QD L P V + + L L K Q A+ + +GL +R +
Sbjct: 81 EDTRLMFQDARLLPWKKVIDNVG----LGL-----KGQWRDAALQALAAVGLADRANE-- 129
Query: 288 IGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI-AEAGK 346
+ +SGG+++RV + +I P LL LDEP LD+ T + + +++ + + G
Sbjct: 130 ----WPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGF 185
Query: 347 TVVTTIHQPS 356
TV+ H S
Sbjct: 186 TVLLVTHDVS 195
|
Length = 257 |
| >gnl|CDD|221721 pfam12698, ABC2_membrane_3, ABC-2 family transporter protein | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 3e-10
Identities = 43/194 (22%), Positives = 74/194 (38%), Gaps = 15/194 (7%)
Query: 545 LLFFIAVFWSFFPIFTAIFTFPQERAMLSKER-AADMYRLSAYFLARTTSDLPLNLVLPV 603
LL + + +E+ KER Y L + DL + L+
Sbjct: 97 LLGLLLFLLILIGALIIALSIVEEKESRIKERLLVSGVSPLKYLLGKILGDLLVGLIQ-- 154
Query: 604 LFLVIVYFMAGLRMGAGPFFLSMLTVFLSIVAAQGLGLAIGAILMDLKKATTLASVTIMT 663
L+I+ + GL + G L +L L +A LG +G++ + + A + S+ I+
Sbjct: 155 -LLIILLLLFGLGIPFGNLLLLLLLFLLYGLAYIALGALLGSLFKNSEAAILVISILILL 213
Query: 664 FM--LAGGYFVQEVPVFISWIRYMSFNFHTYKILLKIQYADISPIVNGMRTDSGFREVCA 721
G + + +P F+ WI + F LL+I Y D++ I +
Sbjct: 214 LSGFFGGLFPLPNMPSFLQWIFSIIPFFAPIDGLLRIIYGDLAEI---------LLSLII 264
Query: 722 LVAMVFGYRLLAYL 735
L+ LLA L
Sbjct: 265 LLLFGVVLLLLALL 278
|
This family is related to the ABC-2 membrane transporter family pfam01061. Length = 278 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.8 bits (147), Expect = 5e-10
Identities = 57/221 (25%), Positives = 99/221 (44%), Gaps = 25/221 (11%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLL-------NLLSGRLMEPTVGGSITYNDHPYSK 225
L I V+ +V AL+GPSG GK+T L +L G E G I + D+
Sbjct: 32 LKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYE---GEIILHPDNVNIL 88
Query: 226 S-------LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL 278
S ++ +I V Q FP ++ E + Y LR+ + E+R + +
Sbjct: 89 SPEVDPIEVRMRISMVFQKPNPFPK-SIFENVAYG--LRIRGVKRRSILEERVENALRNA 145
Query: 279 GL-ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQM 337
L + +D + G +SGG+++R+CI + +P +L DEPTS LD I ++
Sbjct: 146 ALWDEVKDRL--GDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEEL 203
Query: 338 LQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378
+ D+ ++ T + + + + +G+ L+ FG
Sbjct: 204 ISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGE--LIEFG 242
|
Length = 265 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 58.6 bits (143), Expect = 5e-10
Identities = 44/182 (24%), Positives = 73/182 (40%), Gaps = 66/182 (36%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS-----KSL 227
L+G++ SV GEV AL+G +G+GK+TL+ +LSG L +P G I + S +
Sbjct: 16 LDGVSLSVRRGEVHALLGENGAGKSTLMKILSG-LYKPD-SGEILVDGKEVSFASPRDAR 73
Query: 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTM 287
++ I V Q L+V E +Q +E
Sbjct: 74 RAGIAMVYQ-------LSVGE----------------RQM------------VE------ 92
Query: 288 IGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKT 347
I R ++ R ++I LDEPT+ L R+ ++++ + G
Sbjct: 93 I----ARALARNAR--------LLI------LDEPTAALTPAEVERLFKVIRRLRAQGVA 134
Query: 348 VV 349
V+
Sbjct: 135 VI 136
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.3 bits (148), Expect = 6e-10
Identities = 48/192 (25%), Positives = 91/192 (47%), Gaps = 15/192 (7%)
Query: 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLL-------NLLSGRLMEPTVG--GSITYND 220
K +L+ + + +V A +GPSG GK+T L +L+ G E + G+ T +
Sbjct: 95 KHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSK 154
Query: 221 HPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL 280
S L+++IG V Q F +++ + + Y R ++ EK + L
Sbjct: 155 KISSLELRTRIGMVFQKPTPF-EMSIFDNVAYGP--RNNGINDRKILEKIVEKSLKSAAL 211
Query: 281 -ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQ 339
+ +D + +SGG+++R+CI I + P +L +DEPTS LD +I +++
Sbjct: 212 WDEVKDDLDKAG--NALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELIL 269
Query: 340 DIAEAGKTVVTT 351
++ + ++ T
Sbjct: 270 ELKKKYSIIIVT 281
|
Length = 329 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 6e-10
Identities = 48/214 (22%), Positives = 93/214 (43%), Gaps = 38/214 (17%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SL 227
+L ++ V GE + ++G +G+GK+TL+ L R +E G I + S L
Sbjct: 23 VLKNVSFKVKAGEKIGIVGRTGAGKSTLILALF-RFLEAE-EGKIEIDGIDISTIPLEDL 80
Query: 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTM 287
+S + + QD LF T++ L D +E E +
Sbjct: 81 RSSLTIIPQDPTLFSG-TIRSNL----------------------DPFDEYSDEEIYGAL 117
Query: 288 I---GGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA 344
GG +S G+R+ +C+ ++ P +L LDE T+ +D T I + +++
Sbjct: 118 RVSEGGL---NLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIRE-EFT 173
Query: 345 GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378
T++T H+ + + +DK++++ G + +
Sbjct: 174 NSTILTIAHRLRTII--DYDKILVMDAGEVKEYD 205
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 60.9 bits (148), Expect = 8e-10
Identities = 55/195 (28%), Positives = 95/195 (48%), Gaps = 25/195 (12%)
Query: 174 NGITGSVNPGEVLALMGPSGSGKT----TLLNLLS--GRLMEPTVGGSITYN-------- 219
N + S+ GE L ++G SGSGK+ L+ LL+ GR +GGS T+N
Sbjct: 33 NDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGR-----IGGSATFNGREILNLP 87
Query: 220 DHPYSKSLKSKIGFVTQDDV--LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINE 277
+ +K +I + QD + L P++ V E L +L L ++K + + ++ +++
Sbjct: 88 EKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLM--EVLMLHKGMSKAEAFEESVRMLDA 145
Query: 278 LGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQM 337
+ + + M + SGG R+RV I ++ P LL DEPT+ LD T +I+ +
Sbjct: 146 VKMPEARKRM--KMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTL 203
Query: 338 LQDIAEAGKTVVTTI 352
L ++ T + I
Sbjct: 204 LNELKREFNTAIIMI 218
|
Length = 330 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.7 bits (144), Expect = 9e-10
Identities = 49/190 (25%), Positives = 91/190 (47%), Gaps = 23/190 (12%)
Query: 166 SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTL---LNLLSGRLMEPTVGGSITY-NDH 221
+ + IL G++ + +V A++GPSG GK+T LN ++ E V G + + N +
Sbjct: 16 YYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQN 75
Query: 222 PYSKS-----LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVIN 276
Y + L+ ++ V LFP ++V + + Y + + K ID I
Sbjct: 76 IYERRVNLNRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKI-------VGWRPKLEIDDIV 127
Query: 277 ELGLERCQ-----DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTA 331
E L+ I S + +SGG+++R+CI + + P +L +DEP GLD +
Sbjct: 128 ESALKDADLWDEIKHKIHKSALD-LSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIAS 186
Query: 332 LRIVQMLQDI 341
+++ ++Q +
Sbjct: 187 MKVESLIQSL 196
|
Length = 261 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 61.0 bits (148), Expect = 1e-09
Identities = 51/216 (23%), Positives = 98/216 (45%), Gaps = 24/216 (11%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS-----KSL 227
++ ++ S+ GE+L + G G+G+T L+ L G G++ N P +++
Sbjct: 276 VDDVSFSLRRGEILGVAGLVGAGRTELVQALFG-AYPGKFEGNVFINGKPVDIRNPAQAI 334
Query: 228 KSKIGFVTQD---DVLFPHLTVKETLTYAALLRLPN-TLTKQQKEKRAIDV-INELGLER 282
++ I V +D + P L V + +T + L E + I I L ++
Sbjct: 335 RAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKT 394
Query: 283 CQ-DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI 341
IG +SGG +++ + ++ NP +L LDEPT G+D I +++ +
Sbjct: 395 ASPFLPIGR-----LSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQL 449
Query: 342 AEAGKTVVTTIHQPSSRLFHKF---DKLILLGKGSL 374
A+ G ++ SS L D+++++G+G L
Sbjct: 450 AQEGVAIIVV----SSELAEVLGLSDRVLVIGEGKL 481
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 1e-09
Identities = 46/177 (25%), Positives = 81/177 (45%), Gaps = 25/177 (14%)
Query: 178 GSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQD 237
G + GEV+ ++GP+G GKTT + LL+G +++P G S K + +++ D
Sbjct: 362 GEIYDGEVIGILGPNGIGKTTFVKLLAG-VIKPDEGSEEDLK-----VSYKPQ--YISPD 413
Query: 238 DVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVS 297
+ TV++ L A ++ K +++ L LE + V +S
Sbjct: 414 ---YDG-TVEDLLRSAIRSAFGSSYFKT-------EIVKPLNLEDLLE-----RPVDELS 457
Query: 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIH 353
GGE +RV I + L LDEP++ LD + + ++++ E KT + H
Sbjct: 458 GGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDH 514
|
Length = 591 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 61.4 bits (150), Expect = 1e-09
Identities = 57/195 (29%), Positives = 86/195 (44%), Gaps = 46/195 (23%)
Query: 182 PGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLF 241
G+V ++GP+G GKTT + +LSG L+ P +G Y + P + D+VL
Sbjct: 98 EGKVTGILGPNGIGKTTAVKILSGELI-PNLGD---YEEEP------------SWDEVL- 140
Query: 242 PHLTVKETLTYAALLR---------------LP-------NTLTKQQKEKRAID-VINEL 278
E Y L +P L K+ E+ +D V+ L
Sbjct: 141 KRFRGTELQNYFKKLYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKVDERGKLDEVVERL 200
Query: 279 GLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQML 338
GLE D I +SGGE +RV I ++ + F DEPTS LD L + +++
Sbjct: 201 GLENILDRDI-----SELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLI 255
Query: 339 QDIAEAGKTVVTTIH 353
+++AE GK V+ H
Sbjct: 256 RELAE-GKYVLVVEH 269
|
Length = 590 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.1 bits (149), Expect = 1e-09
Identities = 49/182 (26%), Positives = 83/182 (45%), Gaps = 25/182 (13%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY-----SKSL 227
L+ ++ V GE+++L G +G+GK+TL+ +LSG T G I + +
Sbjct: 21 LDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTE 80
Query: 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTK------QQKEKRAIDVINELGLE 281
++ I + Q+ L L+V E + L N +T RA ++ +L L+
Sbjct: 81 RAGIAIIHQELALVKELSVLENIF------LGNEITPGGIMDYDAMYLRAQKLLAQLKLD 134
Query: 282 RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGL-DSTTA--LRIVQML 338
T V + G+++ V I + LL LDEPT+ L +S TA L I++ L
Sbjct: 135 INPATP-----VGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDL 189
Query: 339 QD 340
+
Sbjct: 190 KA 191
|
Length = 506 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 58.7 bits (142), Expect = 1e-09
Identities = 49/188 (26%), Positives = 88/188 (46%), Gaps = 15/188 (7%)
Query: 166 SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK 225
S E+ + + V+ GE L + G +G+GKTTLL +L+G L + G I + ++
Sbjct: 20 SRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVES--GQIQIDGKTATR 77
Query: 226 SLKSK-IGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ 284
+S+ + ++ L L+ E L + L + +Q A+ ++ GL +
Sbjct: 78 GDRSRFMAYLGHLPGLKADLSTLENLHFLCGL---HGRRAKQMPGSALAIV---GLAGYE 131
Query: 285 DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQ-DIAE 343
DT+ VR +S G++KR+ + + L LDEP + LD + +M+ +
Sbjct: 132 DTL-----VRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRG 186
Query: 344 AGKTVVTT 351
G +VTT
Sbjct: 187 GGAALVTT 194
|
Length = 214 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.7 bits (144), Expect = 1e-09
Identities = 59/229 (25%), Positives = 114/229 (49%), Gaps = 26/229 (11%)
Query: 168 EEKDI--LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME----PTVGGSITYNDH 221
+E D+ LNG++ S+ GE ++++G +GSGK+T L+ G E + G + ++
Sbjct: 16 KESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAEN 75
Query: 222 PYSKSLKSKIGFVTQD-DVLFPHLTVKETLTYAALLRLPNT-LTKQQKEKR---AIDVIN 276
++ L+ KIG V Q+ D F TV++ + + + N + +++ KR A+ +N
Sbjct: 76 VWN--LRRKIGMVFQNPDNQFVGATVEDDVAFG----MENQGIPREEMIKRVDEALLAVN 129
Query: 277 ELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQ 336
L + + + SGG+++RV + I + P ++ LDE TS LD T I++
Sbjct: 130 MLDFKTREPARL--------SGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMR 181
Query: 337 MLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385
++ +I E + V +I D+++++ G ++ SE A
Sbjct: 182 VIHEIKEKYQLTVLSITHDLDEAASS-DRILVMKAGEIIKEAAPSELFA 229
|
Length = 277 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 55.9 bits (136), Expect = 2e-09
Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 17/87 (19%)
Query: 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME 209
++ +++ K +L I+ ++NPG+ + L+G +G+GK+TLL L++G L E
Sbjct: 1 IELENLSKTY--------GGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGEL-E 51
Query: 210 PTVGGSITYNDHPYSKSLKSKIGFVTQ 236
P G +T+ KIG+ Q
Sbjct: 52 PDE-GIVTWGS-------TVKIGYFEQ 70
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 58.1 bits (141), Expect = 3e-09
Identities = 53/187 (28%), Positives = 89/187 (47%), Gaps = 23/187 (12%)
Query: 179 SVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP-YSKSLKSKIGFVTQD 237
G+VL L+GP+G GK+T L +L+G+L P +G ++D P + + L G Q+
Sbjct: 22 VPREGQVLGLVGPNGIGKSTALKILAGKLK-PNLG---KFDDPPDWDEILDEFRGSELQN 77
Query: 238 DVLFPHL---TVKETLTYAALLRLPNT-------LTKQQKEKRAID-VINELGLERCQDT 286
F L VK + + +P L K++ E+ +D ++++L L D
Sbjct: 78 --YFTKLLEGDVKVIVKPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHVLDR 135
Query: 287 MIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGK 346
I +SGGE +RV I + + F DEP+S LD L ++++++AE
Sbjct: 136 NI-----DQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDN 190
Query: 347 TVVTTIH 353
V+ H
Sbjct: 191 YVLVVEH 197
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255 |
| >gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 59.0 bits (143), Expect = 3e-09
Identities = 54/195 (27%), Positives = 88/195 (45%), Gaps = 27/195 (13%)
Query: 174 NGITGSVNPGEVLALMGPSGSGKTTL------LNLLS-GRLMEPTVGGSI--TYNDHPYS 224
+ + + GE+ LMG SGSGK+TL LN +S G ++ GS+ D
Sbjct: 41 HNASLDIEEGEICVLMGLSGSGKSTLLRAVNGLNPVSRGSVLVKDGDGSVDVANCDAATL 100
Query: 225 KSLKSK-IGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC 283
+ L++ + V Q L P TV+E + + ++ + K ++ KR + + +GL +
Sbjct: 101 RRLRTHRVSMVFQQFALLPWRTVEENVAFGLEMQ---GMPKAERRKRVDEQLELVGLAQW 157
Query: 284 QDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQD--- 340
D G +SGG ++RV + +L +DEP S LD I LQD
Sbjct: 158 ADRKPG-----ELSGGMQQRVGLARAFATEAPILLMDEPFSALDPL----IRTQLQDELL 208
Query: 341 --IAEAGKTVVTTIH 353
++ KT+V H
Sbjct: 209 ELQSKLKKTIVFVSH 223
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 4e-09
Identities = 51/188 (27%), Positives = 78/188 (41%), Gaps = 26/188 (13%)
Query: 176 ITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-SLKSKI--G 232
I+ V GE+L L G G+G+T L L G + P GG I N + S ++ G
Sbjct: 282 ISLEVRAGEILGLAGVVGAGRTELAETLYG--LRPARGGRIMLNGKEINALSTAQRLARG 339
Query: 233 FV-----TQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTM 287
V Q L+ L AL + + A+ LER + +
Sbjct: 340 LVYLPEDRQSSGLY--LDAPLAWNVCALTHNRRGFWIKPARENAV-------LERYRRAL 390
Query: 288 IGGSF------VRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI 341
F R +SGG +++V I + +P LL +DEPT G+D + I Q+++ I
Sbjct: 391 -NIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSI 449
Query: 342 AEAGKTVV 349
A V+
Sbjct: 450 AAQNVAVL 457
|
Length = 510 |
| >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Score = 58.9 bits (143), Expect = 5e-09
Identities = 55/203 (27%), Positives = 89/203 (43%), Gaps = 64/203 (31%)
Query: 159 VILK-GMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSIT 217
++L G+ S ++ IL+ ++ VNPGE ++GP+G+GK+TLL+L++G
Sbjct: 261 IVLNNGVVSYNDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITG------------ 308
Query: 218 YNDHP--YSKSL----------------KSKIGFVTQDDVLFPHL------TVKETL--- 250
DHP YS L K IG+V+ HL +V+ +
Sbjct: 309 --DHPQGYSNDLTLFGRRRGSGETIWDIKKHIGYVSSS----LHLDYRVSTSVRNVILSG 362
Query: 251 ------TYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304
Y A +QQ K A ++ LG+ D + +S G+++
Sbjct: 363 FFDSIGIYQA------VSDRQQ--KLAQQWLDILGI----DKRTADAPFHSLSWGQQRLA 410
Query: 305 CIGNEIIINPSLLFLDEPTSGLD 327
I ++ +P+LL LDEP GLD
Sbjct: 411 LIVRALVKHPTLLILDEPLQGLD 433
|
Length = 490 |
| >gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 9e-09
Identities = 59/223 (26%), Positives = 108/223 (48%), Gaps = 24/223 (10%)
Query: 176 ITGSVNPGEVLALMGPSGSGKT----TLLNLLS--GRLMEPTVGGSITYNDHPYSK-SLK 228
I+ SV GEV+ ++G SGSGK+ ++ L+ GR+M + +N + S K
Sbjct: 26 ISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVM----AEKLEFNGQDLQRISEK 81
Query: 229 SK-------IGFVTQDDV--LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG 279
+ + + QD + L P TV + A +++ K+ + +RAID++N++G
Sbjct: 82 ERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEA--IKVHQGGNKKTRRQRAIDLLNQVG 139
Query: 280 LERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQ 339
+ + + +SGG +RV I I P LL DEPT+ LD T +I+++L
Sbjct: 140 IPDPASRL--DVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLL 197
Query: 340 DIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382
++ + + I + + K+I++ G ++ GKA +
Sbjct: 198 ELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGKAHD 240
|
Length = 326 |
| >gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 1e-08
Identities = 49/195 (25%), Positives = 89/195 (45%), Gaps = 15/195 (7%)
Query: 180 VNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDV 239
+ PG+V+A++G SG+GKTTLL ++ G + Y
Sbjct: 406 IKPGDVVAVVGQSGAGKTTLLRMILGAQKG--------RGEEKYRPDSGKVEVPKNTVSA 457
Query: 240 LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299
L P + +L + +K A++++N GL D ++ +S G
Sbjct: 458 LIPG-EYEPEFGEVTILE--HLRSKTGDLNAAVEILNRAGL---SDAVLYRRKFSELSTG 511
Query: 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA-EAGKTVVTTIHQPSSR 358
+++R + + P++L +DE + LD TA+R+ + + ++A EAG T++ H+P
Sbjct: 512 QKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHRPEVG 571
Query: 359 LFHKFDKLILLGKGS 373
+ D LIL+G G
Sbjct: 572 NALRPDTLILVGYGK 586
|
Length = 593 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 58.4 bits (141), Expect = 1e-08
Identities = 64/236 (27%), Positives = 107/236 (45%), Gaps = 43/236 (18%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKI 231
+L I+ + G++LA+ G +GSGK++LL ++ G L EP+ G I ++ +I
Sbjct: 441 VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGEL-EPS-EGKIKHS---------GRI 489
Query: 232 GFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER------CQD 285
F Q + P T+K+ + + E R VI LE +D
Sbjct: 490 SFSPQTSWIMPG-TIKDNIIFGL----------SYDEYRYTSVIKACQLEEDIALFPEKD 538
Query: 286 TMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQ--MLQDIAE 343
+ G +SGG+R R+ + + + L LD P + LD T I + + + ++
Sbjct: 539 KTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSN 598
Query: 344 AGKTVVTTIHQPSSRLFH--KFDKLILLGKGSLLYFGKASEAMAY---FSS--IGC 392
+ +VT S+L H K DK++LL +G ++G SE A FSS +G
Sbjct: 599 KTRILVT------SKLEHLKKADKILLLHEGVCYFYGTFSELQAKRPDFSSLLLGL 648
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|226639 COG4170, SapD, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 56.8 bits (137), Expect = 1e-08
Identities = 52/239 (21%), Positives = 105/239 (43%), Gaps = 31/239 (12%)
Query: 164 MTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP--TVGGSITYND- 220
TS ++ ++ ++N GE+ L+G SGSGK+ + + G + + ++D
Sbjct: 14 KTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDI 73
Query: 221 -------HPYSKSLKSKIGFVTQD--DVLFPHLTVKETLTYAALLRLPNTLTKQQ----- 266
K + + + Q+ L P V L +P K +
Sbjct: 74 DLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQN----IPAWTYKGRWWQRF 129
Query: 267 --KEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTS 324
+++RAI++++ +G++ +D M S+ ++ GE ++V I + P LL DEPT+
Sbjct: 130 GWRKRRAIELLHRVGIKDHKDIM--RSYPYELTEGECQKVMIAIALANQPRLLIADEPTN 187
Query: 325 GLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383
++ TT +I ++L + + T + I + DK+ ++LY G+ E+
Sbjct: 188 SMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKI------NVLYCGQTVES 240
|
Length = 330 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 2e-08
Identities = 52/176 (29%), Positives = 84/176 (47%), Gaps = 27/176 (15%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228
++ IL+ I ++ PG + L+G +G+GK+TL+ LL+G L P G + +K +
Sbjct: 324 DRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGEL-APVSG------EIGLAKGI- 375
Query: 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMI 288
K+G+ Q + F L E+ L RL +Q+ D + G + + T
Sbjct: 376 -KLGYFAQHQLEF--LRADES-PLQHLARLAPQELEQKLR----DYLGGFGFQGDKVTEE 427
Query: 289 GGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA 344
F SGGE+ R+ + + P+LL LDEPT+ LD + M Q + EA
Sbjct: 428 TRRF----SGGEKARLVLALIVWQRPNLLLLDEPTNHLD-------LDMRQALTEA 472
|
Length = 638 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.7 bits (138), Expect = 2e-08
Identities = 56/205 (27%), Positives = 90/205 (43%), Gaps = 48/205 (23%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK------- 225
LN ++ + GE+ ++G SG+GK+TL+ ++ L PT G + + +
Sbjct: 21 LNNVSLHIPAGEIFGVIGASGAGKSTLIRCIN-LLERPT-SGRVLVDGQDLTALSEKELR 78
Query: 226 SLKSKIGFVTQ-----------DDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDV 274
+ +IG + Q D+V P L L T K + + R
Sbjct: 79 KARRQIGMIFQHFNLLSSRTVFDNVALP-------------LELAGT-PKAEIKAR---- 120
Query: 275 INEL----GLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTT 330
+ EL GL D + +SGG+++RV I + NP +L DE TS LD T
Sbjct: 121 VTELLELVGLSDKADR-----YPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPAT 175
Query: 331 ALRIVQMLQDI-AEAGKTVVTTIHQ 354
I+++L+DI E G T+V H+
Sbjct: 176 TRSILELLKDINRELGLTIVLITHE 200
|
Length = 343 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 2e-08
Identities = 62/219 (28%), Positives = 98/219 (44%), Gaps = 34/219 (15%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKI 231
+L I + GE+LA+ G +GSGKT+LL L+ G L EP+ G I ++ +I
Sbjct: 52 VLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGEL-EPS-EGKIKHS---------GRI 100
Query: 232 GFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC------QD 285
F +Q + P T+KE + + E R V+ LE +D
Sbjct: 101 SFSSQFSWIMPG-TIKENIIFGV----------SYDEYRYKSVVKACQLEEDITKFPEKD 149
Query: 286 TMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAG 345
+ G +SGG+R R+ + + + L LD P LD T I + A
Sbjct: 150 NTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMAN 209
Query: 346 KTVVTTIHQPSSRLFH--KFDKLILLGKGSLLYFGKASE 382
KT + +S++ H K DK+++L +GS ++G SE
Sbjct: 210 KTRILV----TSKMEHLKKADKILILHEGSSYFYGTFSE 244
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 56.7 bits (138), Expect = 3e-08
Identities = 50/179 (27%), Positives = 74/179 (41%), Gaps = 39/179 (21%)
Query: 178 GSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQD 237
G + GEV+ ++GP+G GKTT LL+G L +P G + KI + Q
Sbjct: 360 GEIYEGEVIGIVGPNGIGKTTFAKLLAGVL-KPDEG----------EVDPELKISYKPQ- 407
Query: 238 DVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAID-------VINELGLERCQDTMIGG 290
++ T LLR + +I L LER D
Sbjct: 408 -----YIKPDYDGTVEDLLR---------SITDDLGSSYYKSEIIKPLQLERLLD----- 448
Query: 291 SFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTV 348
V+ +SGGE +RV I + + L LDEP++ LD L + + ++ IAE T
Sbjct: 449 KNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATA 507
|
Length = 590 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 3e-08
Identities = 47/167 (28%), Positives = 83/167 (49%), Gaps = 19/167 (11%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS-----KSL 227
+N ++ ++ GE+L + G G+G+T L+ +L G L P G +T + H L
Sbjct: 268 VNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGAL--PRTSGYVTLDGHEVVTRSPQDGL 325
Query: 228 KSKIGFVTQD---DVLFPHLTVKETLTYAALLRLPNTL--TKQQKEKRAI-DVINELGLE 281
+ I ++++D D L ++VKE ++ AL K E++A+ D I ++
Sbjct: 326 ANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIK 385
Query: 282 R-CQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLD 327
+ IG +SGG +++V I ++ P +L LDEPT G+D
Sbjct: 386 TPSMEQAIGL-----LSGGNQQKVAIARGLMTRPKVLILDEPTRGVD 427
|
Length = 501 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 55.0 bits (132), Expect = 1e-07
Identities = 43/148 (29%), Positives = 80/148 (54%), Gaps = 11/148 (7%)
Query: 225 KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTL--TKQQKEKRAIDVINELGLER 282
K L++ V+Q+ +LF ++++ E + + + T K+ + AID E L
Sbjct: 1292 KDLRNLFSIVSQEPMLF-NMSIYENIKFG---KEDATREDVKRACKFAAIDEFIE-SLPN 1346
Query: 283 CQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA 342
DT +G + + +SGG+++R+ I ++ P +L LDE TS LDS + I + + DI
Sbjct: 1347 KYDTNVG-PYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIK 1405
Query: 343 E-AGKTVVTTIHQPSSRLFHKFDKLILL 369
+ A KT++T H+ +S + DK+++
Sbjct: 1406 DKADKTIITIAHRIAS--IKRSDKIVVF 1431
|
Length = 1466 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 1e-07
Identities = 56/226 (24%), Positives = 101/226 (44%), Gaps = 29/226 (12%)
Query: 166 SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK 225
S E+ L+ I V G ++A++G +G GKT+L++ + G L P S+
Sbjct: 626 SKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGEL-PPRSDASVV-------- 676
Query: 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQD 285
++ + +V Q +F + TV++ + + + ++ +RAIDV L+ D
Sbjct: 677 -IRGTVAYVPQVSWIF-NATVRDNILFGSPF-------DPERYERAIDVT---ALQHDLD 724
Query: 286 TMIGGSFV----RGV--SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQ 339
+ GG RGV SGG+++RV + + N + D+P S LD+ ++
Sbjct: 725 LLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCI 784
Query: 340 DIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385
GKT V +Q + D++IL+ +G + G E
Sbjct: 785 KDELRGKTRVLVTNQ--LHFLSQVDRIILVHEGMIKEEGTYEELSN 828
|
Length = 1622 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.1 bits (130), Expect = 2e-07
Identities = 50/182 (27%), Positives = 84/182 (46%), Gaps = 28/182 (15%)
Query: 179 SVNPGEVLALMGPSGSGKT-TLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQD 237
S+ GE LA++G SGSGK+ T L L+ RL+E GG + + + + I Q
Sbjct: 38 SLQRGETLAIVGESGSGKSVTALALM--RLLEQA-GGLVQCDKMLLRRRSRQVIELSEQS 94
Query: 238 DV--------------------LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINE 277
L P TV E + A +RL ++++ A ++++
Sbjct: 95 AAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQI--AESIRLHQGASREEAMVEAKRMLDQ 152
Query: 278 LGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQM 337
+ + Q I + +SGG R+RV I + P++L DEPT+ LD T +I+Q+
Sbjct: 153 VRIPEAQ--TILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQL 210
Query: 338 LQ 339
++
Sbjct: 211 IK 212
|
Length = 623 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.0 bits (130), Expect = 2e-07
Identities = 49/177 (27%), Positives = 75/177 (42%), Gaps = 32/177 (18%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL---- 227
+L+ T ++NPG+ + L+G +G GK+TLL LL + GGS T+ P + L
Sbjct: 16 LLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEI--SADGGSYTF---PGNWQLAWVN 70
Query: 228 -------KSKIGFVTQDDVLFPHLTVKETLTYA-------ALLRLPNTLTKQQK---EKR 270
+ + +V D + L + L A A+ + L R
Sbjct: 71 QETPALPQPALEYVIDGDREYRQLEAQ--LHDANERNDGHAIATIHGKLDAIDAWTIRSR 128
Query: 271 AIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLD 327
A +++ LG Q V SGG R R+ + +I LL LDEPT+ LD
Sbjct: 129 AASLLHGLGFSNEQLERP----VSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLD 181
|
Length = 638 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 54.4 bits (132), Expect = 2e-07
Identities = 60/218 (27%), Positives = 95/218 (43%), Gaps = 53/218 (24%)
Query: 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS----K 225
K IL I+ S PG + ++G +G+GK+TLL +++G D +
Sbjct: 20 KQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGV-------------DKEFEGEARP 66
Query: 226 SLKSKIGFVTQDDVLFPHLTVKETL------TYAALLRL---------PN-----TLTKQ 265
+ K+G++ Q+ L P TV+E + AAL R P+ +Q
Sbjct: 67 APGIKVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQ 126
Query: 266 QKEKRAIDVINELGLE----------RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPS 315
+ + ID + L+ RC + V +SGGER+RV + ++ P
Sbjct: 127 GELQEIIDAADAWDLDSQLEIAMDALRCPP---WDAKVTKLSGGERRRVALCRLLLEKPD 183
Query: 316 LLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIH 353
+L LDEPT+ LD+ + + Q L D G TVV H
Sbjct: 184 MLLLDEPTNHLDAESVAWLEQFLHDY--PG-TVVAVTH 218
|
Length = 556 |
| >gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 2e-07
Identities = 59/246 (23%), Positives = 111/246 (45%), Gaps = 33/246 (13%)
Query: 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME 209
+K +V+YK + S EK L+ + V GE L ++G +GSGK+T+ ++ L+
Sbjct: 5 IKCKNVSYK--YESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLI- 61
Query: 210 PTVGGSITYN----DHPYSKSLKSKIGFVTQD-DVLFPHLTVKETLTYAALLRLPNTLTK 264
P+ G D +++K G V Q+ D V+E + + P L
Sbjct: 62 PSEGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFG-----PENLGI 116
Query: 265 QQKEKRAIDVINELGLERCQDTM--IGGSFVRG-----VSGGERKRVCIGNEIIINPSLL 317
+E R ER +++ +G R +SGG+++RV I + + P +
Sbjct: 117 PPEEIR----------ERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECI 166
Query: 318 FLDEPTSGLDSTTALRIVQMLQDI-AEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376
DEPT+ LD + +V ++++ + G T++ H + + D++I++ G ++
Sbjct: 167 IFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAV--EADRIIVMDSGKVVM 224
Query: 377 FGKASE 382
G E
Sbjct: 225 EGTPKE 230
|
Length = 280 |
| >gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.1 bits (131), Expect = 2e-07
Identities = 44/183 (24%), Positives = 80/183 (43%), Gaps = 46/183 (25%)
Query: 159 VILKGMTSS-EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSIT 217
+ ++ +T + + + + GE LA++G +G GKTTLL L G L EP G++
Sbjct: 320 LEVENLTKGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGEL-EPD-SGTVK 377
Query: 218 YNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINE 277
+++ + IG+ QD +A N LT D +++
Sbjct: 378 WSE-------NANIGYYAQD--------------HAY--DFENDLT-------LFDWMSQ 407
Query: 278 LGLERCQDTMIGGSF-------------VRGVSGGERKRVCIGNEIIINPSLLFLDEPTS 324
E + + G+ V+ +SGGE+ R+ G ++ P++L +DEPT+
Sbjct: 408 WRQEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTN 467
Query: 325 GLD 327
+D
Sbjct: 468 HMD 470
|
Length = 530 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.1 bits (127), Expect = 2e-07
Identities = 61/265 (23%), Positives = 117/265 (44%), Gaps = 36/265 (13%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS-------- 224
LN + + +V ++G +GSGK+T++ L +G ++ T G D+
Sbjct: 27 LNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISET--GQTIVGDYAIPANLKKIKE 84
Query: 225 -KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTL--TKQQKEKRAIDVINELGLE 281
K L+ +IG V Q FP + + + P L KQ+ K+ +++ + L
Sbjct: 85 VKRLRKEIGLVFQ----FPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLP 140
Query: 282 RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI 341
D + F +SGG+++RV + I ++ + L LDEPT GLD + + + +
Sbjct: 141 E--DYVKRSPF--ELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERL 196
Query: 342 -AEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGCSPQIAMNP 400
E K ++ H ++ D++I++ +G ++ G E FS+ +I ++P
Sbjct: 197 NKEYKKRIIMVTHN-MDQVLRIADEVIVMHEGKVISIGSPFEI---FSNQELLTKIEIDP 252
Query: 401 AEFL----------LDLANGNLHDV 415
+ +DL N N+ +
Sbjct: 253 PKLYQLMYKLKNKGIDLLNKNIRTI 277
|
Length = 289 |
| >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 51.1 bits (122), Expect = 3e-07
Identities = 50/190 (26%), Positives = 84/190 (44%), Gaps = 18/190 (9%)
Query: 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227
++ +L I+ + G +L L G +G+GKTTLL L++G L+ P G I + K L
Sbjct: 12 HDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAG-LLNPE-KGEILFERQSIKKDL 69
Query: 228 ---KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ 284
+ ++ FV + P+LT++E Y + ++ LE
Sbjct: 70 CTYQKQLCFVGHRSGINPYLTLRENCLY--------DIHFSPGAVGITELCRLFSLEHLI 121
Query: 285 DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA 344
D G +S G++++V + + L LDEP LD + L I+ +Q+
Sbjct: 122 DYPCG-----LLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAK 176
Query: 345 GKTVVTTIHQ 354
G V+ T HQ
Sbjct: 177 GGAVLLTSHQ 186
|
Length = 200 |
| >gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR | Back alignment and domain information |
|---|
Score = 51.8 bits (124), Expect = 4e-07
Identities = 55/226 (24%), Positives = 99/226 (43%), Gaps = 26/226 (11%)
Query: 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225
K +L + + PG+ + + G +GSGK++L L+ M G I + SK
Sbjct: 34 KPVLKHVKAYIKPGQKVGICGRTGSGKSSLS--LAFFRMVDIFDGKIVIDGIDISKLPLH 91
Query: 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQD 285
+L+S++ + QD +LF + +R + + R + + L+
Sbjct: 92 TLRSRLSIILQDPILF-----------SGSIRFNLDPECKCTDDRLWEALEIAQLKNMVK 140
Query: 286 TMIGGSFVRGVSGGE------RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQ 339
++ GG GGE R+ C+ + S+L +DE T+ +D T I+Q +
Sbjct: 141 SLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATE-NILQKVV 199
Query: 340 DIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385
A A +TVVT H+ S+ L D +++L +G L+ +A
Sbjct: 200 MTAFADRTVVTIAHRVSTIL--DADLVLVLSRGILVECDTPENLLA 243
|
The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 51.2 bits (122), Expect = 4e-07
Identities = 49/198 (24%), Positives = 99/198 (50%), Gaps = 29/198 (14%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYN----DHPYSKSLK 228
L+ I + G++ ++G G GK++LL + G + T+ G + ++ P ++ +
Sbjct: 17 LSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQ--TLEGKVHWSNKNESEPSFEATR 74
Query: 229 SK----IGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVIN---ELGLE 281
S+ + + Q L + TV+E +T+ + +Q+ K D + ++ L
Sbjct: 75 SRNRYSVAYAAQKPWLL-NATVEENITFGSPF-------NKQRYKAVTDACSLQPDIDLL 126
Query: 282 RCQD-TMIGGSFVRGV--SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQ-- 336
D T IG RG+ SGG+R+R+C+ + N +++FLD+P S LD + ++Q
Sbjct: 127 PFGDQTEIGE---RGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEG 183
Query: 337 MLQDIAEAGKTVVTTIHQ 354
+L+ + + +T+V H+
Sbjct: 184 ILKFLQDDKRTLVLVTHK 201
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 4e-07
Identities = 51/200 (25%), Positives = 86/200 (43%), Gaps = 24/200 (12%)
Query: 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS--- 224
++ +L I SV +AL+G +GSGK+TL +LL G P G I + P S
Sbjct: 352 DDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYY--PLTEGEIRLDGRPLSSLS 409
Query: 225 -KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC 283
L+ + V QD V+ A TL + E++ + + L
Sbjct: 410 HSVLRQGVAMVQQDPVVL-----------ADTFLANVTLGRDISEEQVWQALETVQLAEL 458
Query: 284 QDTMIGGSFVR------GVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQM 337
++ G + +S G+++ + + ++ P +L LDE T+ +DS T I Q
Sbjct: 459 ARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQA 518
Query: 338 LQDIAEAGKTVVTTIHQPSS 357
L + E T+V H+ S+
Sbjct: 519 LAAVREH-TTLVVIAHRLST 537
|
Length = 592 |
| >gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 6e-07
Identities = 53/192 (27%), Positives = 97/192 (50%), Gaps = 21/192 (10%)
Query: 174 NGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYN-------DHPYSKS 226
+G+T + GE L ++G SG GK+T + G L++ T G + + ++
Sbjct: 38 DGVTLRLYEGETLGVVGESGCGKSTFARAIIG-LVKAT-DGEVAWLGKDLLGMKDDEWRA 95
Query: 227 LKSKIGFVTQDDV--LFPHLTVKETLTYAALLRL--PNTLTKQQKEKRAIDVINELGLER 282
++S I + QD + L P +T+ E + A LR P L++Q+ + R ++ ++GL
Sbjct: 96 VRSDIQMIFQDPLASLNPRMTIGEII--AEPLRTYHPK-LSRQEVKDRVKAMMLKVGL-- 150
Query: 283 CQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI- 341
+I + SGG+ +R+ I +I+ P L+ DEP S LD + ++V +LQ +
Sbjct: 151 -LPNLIN-RYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQ 208
Query: 342 AEAGKTVVTTIH 353
E G +++ H
Sbjct: 209 REMGLSLIFIAH 220
|
Length = 331 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 52.3 bits (125), Expect = 9e-07
Identities = 57/215 (26%), Positives = 100/215 (46%), Gaps = 33/215 (15%)
Query: 166 SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRL--MEPTVGGSITYNDHPY 223
S K L+ I + G ++A++G +G GKT+L++ + G L E +
Sbjct: 626 SKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETS------------ 673
Query: 224 SKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVI---NELGL 280
S ++ + +V Q +F + TV+E + + + + ++ RAIDV ++L L
Sbjct: 674 SVVIRGSVAYVPQVSWIF-NATVRENILFGSDF-------ESERYWRAIDVTALQHDLDL 725
Query: 281 ERCQD-TMIGGSFVRGV--SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQM 337
+D T IG RGV SGG+++RV + + N + D+P S LD+ A ++
Sbjct: 726 LPGRDLTEIGE---RGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDS 782
Query: 338 LQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKG 372
GKT V +Q D++IL+ +G
Sbjct: 783 CMKDELKGKTRVLVTNQ--LHFLPLMDRIILVSEG 815
|
Length = 1495 |
| >gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 1e-06
Identities = 51/195 (26%), Positives = 95/195 (48%), Gaps = 29/195 (14%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLM----EPTVGGSITYNDHPYSKSL 227
+L I+ S++PG+ + L+G +GSGK+TLL+ RL+ + + G +++N P K
Sbjct: 19 VLENISFSISPGQRVGLLGRTGSGKSTLLSAFL-RLLNTEGDIQIDG-VSWNSVPLQKWR 76
Query: 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQD-- 285
K+ G + Q +F T ++ L P + ++ V E+GL+ +
Sbjct: 77 KA-FGVIPQKVFIFSG-TFRKNLD-------PY---GKWSDEEIWKVAEEVGLKSVIEQF 124
Query: 286 ------TMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQ 339
++ G V +S G ++ +C+ ++ +L LDEP++ LD T I + L+
Sbjct: 125 PGQLDFVLVDGGCV--LSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLK 182
Query: 340 DIAEAGKTVVTTIHQ 354
A A TV+ + H+
Sbjct: 183 Q-AFADCTVILSEHR 196
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 47.8 bits (115), Expect = 2e-06
Identities = 17/44 (38%), Positives = 29/44 (65%)
Query: 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQD 340
SGGE+ R+ + ++ NP+LL LDEPT+ LD + + + L++
Sbjct: 72 SGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKE 115
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 2e-06
Identities = 46/166 (27%), Positives = 79/166 (47%), Gaps = 19/166 (11%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS-----KSL 227
L+G +V PG V+AL+G +G+GK+T++ +L+G + GSI Y + S
Sbjct: 20 LSGAALNVYPGRVMALVGENGAGKSTMMKVLTG--IYTRDAGSILYLGKEVTFNGPKSSQ 77
Query: 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNT----LTKQQKEKRAIDVINELGLERC 283
++ IG + Q+ L P LT+ E + L R + ++ A ++ L L
Sbjct: 78 EAGIGIIHQELNLIPQLTIAENIF---LGREFVNRFGRIDWKKMYAEADKLLARLNLRFS 134
Query: 284 QDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDST 329
D ++G +S GE++ V I + ++ +DEPT L T
Sbjct: 135 SDKLVG-----ELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDT 175
|
Length = 501 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 3e-06
Identities = 51/217 (23%), Positives = 100/217 (46%), Gaps = 34/217 (15%)
Query: 153 TDVTYKVIL--KGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP 210
+ +VIL + +TS + I + ++ ++ GE+L + G G+ +T ++ L G +
Sbjct: 243 ENKPGEVILEVRNLTSLRQPSIRD-VSFDLHKGEILGIAGLVGAKRTDIVETLFG--IRE 299
Query: 211 TVGGSI-----TYNDHPYSKSLKSKIGFVTQD----------DVLFPHL--TVKETLTYA 253
G+I N+H ++++ VT++ D+ F L ++
Sbjct: 300 KSAGTITLHGKKINNHNANEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKV 359
Query: 254 ALLRLPNTLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVRGVSGGERKRVCIGNEIII 312
LL N+ K + VI+ + ++ T IG +SGG +++V IG ++
Sbjct: 360 GLLD--NSRMKSDTQW----VIDSMRVKTPGHRTQIGS-----LSGGNQQKVIIGRWLLT 408
Query: 313 NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVV 349
P +L LDEPT G+D I Q++ ++A+ K ++
Sbjct: 409 QPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGII 445
|
Length = 491 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 3e-06
Identities = 62/226 (27%), Positives = 102/226 (45%), Gaps = 34/226 (15%)
Query: 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGG-----SITY-NDH 221
E K +L ++ SV G++ ++G +GSGK+TLL L + E + G SI Y
Sbjct: 671 EPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQF-EISEGRVWAERSIAYVPQQ 729
Query: 222 PY--SKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG 279
+ + +++ I F ++D V+ + A L +L G
Sbjct: 730 AWIMNATVRGNILFFDEEDAARLADAVRVSQLEADLAQLGG------------------G 771
Query: 280 LERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQ 339
LE T IG V +SGG++ RV + + N + LD+P S LD+ R+V+
Sbjct: 772 LE----TEIGEKGV-NLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECF 826
Query: 340 DIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385
A AGKT V HQ + + D ++ LG G + + G +++ M
Sbjct: 827 LGALAGKTRVLATHQ--VHVVPRADYVVALGDGRVEFSGSSADFMR 870
|
Length = 1560 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 4e-06
Identities = 52/181 (28%), Positives = 93/181 (51%), Gaps = 26/181 (14%)
Query: 158 KVI-LKGMTSS-EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGS 215
KVI + ++ +K +++ ++ + PG ++ ++GP+G+GK+TL +++G E G+
Sbjct: 321 KVIEAENLSKGFGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITG--QEQPDSGT 378
Query: 216 ITYNDHPYSKSLKSKIGFVTQD-DVLFPHLTVKETLTYAA-LLRLPNTLTKQQKEKRA-I 272
I + K+ +V Q D L P+ TV E ++ +++ L K++ RA +
Sbjct: 379 IKIGE-------TVKLAYVDQSRDALDPNKTVWEEISGGLDIIQ----LGKREVPSRAYV 427
Query: 273 DVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTAL 332
N G + Q +G +SGGER RV + + ++L LDEPT+ LD T L
Sbjct: 428 GRFNFKGSD--QQKKVG-----QLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVET-L 479
Query: 333 R 333
R
Sbjct: 480 R 480
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|184131 PRK13546, PRK13546, teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 4e-06
Identities = 55/220 (25%), Positives = 96/220 (43%), Gaps = 30/220 (13%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIG 232
L+ I+ G+V+ L+G +GSGK+TL N++ G L PTVG + +
Sbjct: 40 LDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSL-SPTVGKVDRNGE----------VS 88
Query: 233 FVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAI--DVI--NELGLERCQDTMI 288
+ L LT E + + L + ++KE +A+ +I +ELG Q
Sbjct: 89 VIAISAGLSGQLTGIENIEFKMLC-----MGFKRKEIKAMTPKIIEFSELGEFIYQP--- 140
Query: 289 GGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTV 348
V+ S G R ++ I +NP +L +DE S D T A + + + + E KT+
Sbjct: 141 ----VKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTI 196
Query: 349 VTTIHQPSSRLFHKF-DKLILLGKGSLLYFGKASEAMAYF 387
H + +F K+ + G L +G+ + + +
Sbjct: 197 FFVSH--NLGQVRQFCTKIAWIEGGKLKDYGELDDVLPKY 234
|
Length = 264 |
| >gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.5 bits (118), Expect = 6e-06
Identities = 57/223 (25%), Positives = 93/223 (41%), Gaps = 39/223 (17%)
Query: 150 LKFTDVTYKVILKGMTSSEEKDI------------LNGITGSVNPGEVLALMGPSGSGKT 197
+KF VT K + + KD+ LN I+ V GE++ ++G +GSGK+
Sbjct: 5 VKFEHVTKKYKMYNKPFDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKS 64
Query: 198 TLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLR 257
TL NL++G M P G + +K + L LT E + L+
Sbjct: 65 TLSNLIAGVTM-PNKG----------TVDIKGSAALIAISSGLNGQLTGIENIELKGLMM 113
Query: 258 LPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSF----VRGVSGGERKRVCIGNEIIIN 313
LTK++ ++ ++I + G F V+ S G + R+ + IN
Sbjct: 114 ---GLTKEKIKEIIPEIIEFADI---------GKFIYQPVKTYSSGMKSRLGFAISVHIN 161
Query: 314 PSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPS 356
P +L +DE S D T + + + + E GKT+ H S
Sbjct: 162 PDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLS 204
|
Length = 549 |
| >gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 8e-06
Identities = 49/212 (23%), Positives = 83/212 (39%), Gaps = 56/212 (26%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLN---LLSGRLMEPTVGGSITYNDHPYSKSLKS 229
L + S+ ++ + G SGSGK+TL+N SG+ K ++
Sbjct: 11 LQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLYASGKAR---------LISFL-PKFSRN 60
Query: 230 KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIG 289
K+ F+ Q L + L Y L + +TL
Sbjct: 61 KLIFIDQLQFL-----IDVGLGYLTLGQKLSTL--------------------------- 88
Query: 290 GSFVRGVSGGERKRVCIGNEIIINP--SLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKT 347
SGGE +RV + +E+ P +L LDEP++GL +++++++ + + G T
Sbjct: 89 -------SGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNT 141
Query: 348 VVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379
V+ H + D +I G GS GK
Sbjct: 142 VILIEHNL--DVLSSADWIIDFGPGSGKSGGK 171
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 48.9 bits (116), Expect = 1e-05
Identities = 30/87 (34%), Positives = 49/87 (56%), Gaps = 6/87 (6%)
Query: 171 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS----KS 226
+I + ++ G+ A +G SG GK+T+L L+ RL +PT G I + H K
Sbjct: 399 EIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIE-RLYDPTEGDIIINDSHNLKDINLKW 457
Query: 227 LKSKIGFVTQDDVLFPHLTVKETLTYA 253
+SKIG V+QD +LF + ++K + Y+
Sbjct: 458 WRSKIGVVSQDPLLFSN-SIKNNIKYS 483
|
Length = 1466 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 1e-05
Identities = 67/237 (28%), Positives = 106/237 (44%), Gaps = 41/237 (17%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS----KSL 227
+L G++ + P E + ++G +GSGK+TLL L R++E GG I N + L
Sbjct: 1325 VLRGVSFRIAPREKVGIVGRTGSGKSTLL-LTFMRMVE-VCGGEIRVNGREIGAYGLREL 1382
Query: 228 KSKIGFVTQDDVLF---------PHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL 278
+ + + QD VLF P L +AA L L + E ID
Sbjct: 1383 RRQFSMIPQDPVLFDGTVRQNVDPFLEASSAEVWAA-LELVGLRERVASESEGID----- 1436
Query: 279 GLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPS-LLFLDEPTSGLDSTTAL-RIVQ 336
R + GGS S G+R+ +C+ ++ S + +DE T+ +D AL R +Q
Sbjct: 1437 --SRVLE---GGS---NYSVGQRQLMCMARALLKKGSGFILMDEATANIDP--ALDRQIQ 1486
Query: 337 MLQDIAEAGKTVVTTIHQPSSRLFH---KFDKLILLGKGSLLYFGKASEAMAYFSSI 390
A + TV+T H RL H ++DK+I++ G++ G E + SI
Sbjct: 1487 ATVMSAFSAYTVITIAH----RL-HTVAQYDKIIVMDHGAVAEMGSPRELVMNRQSI 1538
|
Length = 1560 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 48.4 bits (115), Expect = 1e-05
Identities = 56/245 (22%), Positives = 101/245 (41%), Gaps = 42/245 (17%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIG 232
LNGIT S+ G ++A++G G GK++LL+ L + + V G + +K +
Sbjct: 654 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDK--VEGHVH---------MKGSVA 702
Query: 233 FVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQD-TMIGGS 291
+V Q + +++E + + L Q+ A ++ +L + D T IG
Sbjct: 703 YVPQ-QAWIQNDSLRENILFGKALNEK----YYQQVLEACALLPDLEILPSGDRTEIGEK 757
Query: 292 FVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQ-------MLQDIAEA 344
V +SGG+++RV + + N + D+P S +D+ I + +L
Sbjct: 758 GV-NLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVL-----K 811
Query: 345 GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGCSPQIAMNPAEFL 404
KT + H S + D +I++ G + G E + + AEFL
Sbjct: 812 NKTRILVTHGIS--YLPQVDVIIVMSGGKISEMGSYQELLQRDGAF----------AEFL 859
Query: 405 LDLAN 409
A
Sbjct: 860 RTYAP 864
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.9 bits (111), Expect = 2e-05
Identities = 53/234 (22%), Positives = 95/234 (40%), Gaps = 26/234 (11%)
Query: 180 VNPGEVLALMGPSGSGKTTLL-------NLLSGRLMEPTVG--GSITYNDHPYSKSLKSK 230
+ E+ +GPSG GK+T+L +L+ G E V G Y ++
Sbjct: 31 IRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRY 90
Query: 231 IGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGG 290
IG V Q F +++ + + + LRL N ++ + + +D +
Sbjct: 91 IGMVFQQPNPFS-MSIFDNVAFG--LRL-NRYKGDLGDRVKHALQGAALWDEVKDKLKVS 146
Query: 291 SFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVT 350
+SGG+++R+CI I P +L LDEP S LD R+ +++ ++ + +
Sbjct: 147 GL--SLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALV 204
Query: 351 TIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA--MAYFSSIGCSPQIAMNPAE 402
T H + I + + + S+ Y +G + QI NP E
Sbjct: 205 T---------HNMQQAIRVADTTAFFSVDISQGTRTGYLVEMGPTAQIFQNPRE 249
|
Length = 261 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 45.1 bits (106), Expect = 2e-05
Identities = 44/201 (21%), Positives = 69/201 (34%), Gaps = 64/201 (31%)
Query: 182 PGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLF 241
PGEV+ ++GP GSGKTTL L R + P GG I +
Sbjct: 1 PGEVILIVGPPGSGKTTLARAL-ARELGPPGGGVIYIDG--------------------- 38
Query: 242 PHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301
E + L +L + +K + ++ L L +
Sbjct: 39 ------EDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKL--------------- 77
Query: 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQM------LQDIAEAGKTVVTTIHQP 355
P +L LDE TS LD+ ++ + L +E TV+ T +
Sbjct: 78 -----------KPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDE 126
Query: 356 ----SSRLFHKFDKLILLGKG 372
+ L +FD+ I+L
Sbjct: 127 KDLGPALLRRRFDRRIVLLLI 147
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 5e-05
Identities = 44/185 (23%), Positives = 85/185 (45%), Gaps = 23/185 (12%)
Query: 179 SVNPGEVLALMGPSGSGKTTLLNLL----SGRLMEPTVGGSITYNDHPYS-----KSLKS 229
S+ GE+L + G G+G+T L+ L GR G I + P +++
Sbjct: 284 SLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWE-----GEIFIDGKPVKIRNPQQAIAQ 338
Query: 230 KIGFVTQD---DVLFPHLTVKETLTYAALLRL--PNTLTKQQKEKRAIDVINELGLERCQ 284
I V +D D + P + V + +T AAL R + + + K ++ I L + +
Sbjct: 339 GIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKV-KTA 397
Query: 285 DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA 344
+ + +SGG +++ + +++NP +L LDEPT G+D I +++ + +
Sbjct: 398 SPELA---IARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQ 454
Query: 345 GKTVV 349
G ++
Sbjct: 455 GVAII 459
|
Length = 506 |
| >gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 5e-05
Identities = 45/195 (23%), Positives = 86/195 (44%), Gaps = 25/195 (12%)
Query: 161 LKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKT-TLLNLLSGRLMEPTV---GGSI 216
L+ + + +++G++ ++ G VLAL+G SGSGK+ T L ++ V G +
Sbjct: 7 LRNIALQAAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALG--ILPAGVRQTAGRV 64
Query: 217 TYNDHPYS-KSLKSK-IGFVTQD--DVLFPHLT----VKETLTYAALLRLPNTLTKQQKE 268
+ P + +L+ + I + Q+ P T +ET AL + + +
Sbjct: 65 LLDGKPVAPCALRGRKIATIMQNPRSAFNPLHTMHTHARETC--LALGKPAD-------D 115
Query: 269 KRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDS 328
+ +GLE + + +SGG +R+ I ++ + DEPT+ LD
Sbjct: 116 ATLTAALEAVGLE--NAARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDV 173
Query: 329 TTALRIVQMLQDIAE 343
RI+ +L+ I +
Sbjct: 174 VAQARILDLLESIVQ 188
|
Length = 254 |
| >gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 1e-04
Identities = 55/214 (25%), Positives = 88/214 (41%), Gaps = 38/214 (17%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS-KSL---K 228
+ I ++ GE++ L+G +GSGK+TL LL+G L +P G I + P S + L +
Sbjct: 339 VGPINLTIKRGELVFLIGGNGSGKSTLAMLLTG-LYQPQSGE-ILLDGKPVSAEQLEDYR 396
Query: 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDT-- 286
V D LF L E +A + E L+R +
Sbjct: 397 KLFSAVFSDYHLFDQLL--------------------GPEGKASPQLIEKWLQRLELAHK 436
Query: 287 --MIGGSFVR-GVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIV---QMLQD 340
+ G F +S G++KR+ + ++ +L LDE + D A R +L
Sbjct: 437 TSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAA--DQDPAFRREFYQVLLPL 494
Query: 341 IAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374
+ E GKT+ H F D+L+ + G L
Sbjct: 495 LKEQGKTIFAISH--DDHYFIHADRLLEMRNGQL 526
|
Length = 546 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 2e-04
Identities = 53/209 (25%), Positives = 99/209 (47%), Gaps = 32/209 (15%)
Query: 161 LKGMT---SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLM----EPTVG 213
++G+T + + +L ++ SV G+ + L+G +GSGK+TLL+ L RL+ E +
Sbjct: 1220 VQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALL-RLLSTEGEIQID 1278
Query: 214 GSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAID 273
G +++N K+ G + Q +F K Y Q ++
Sbjct: 1279 G-VSWNSVTLQTWRKA-FGVIPQKVFIFSGTFRKNLDPYE-----------QWSDEEIWK 1325
Query: 274 VINELGL----ERCQD----TMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSG 325
V E+GL E+ D ++ G +V +S G ++ +C+ I+ +L LDEP++
Sbjct: 1326 VAEEVGLKSVIEQFPDKLDFVLVDGGYV--LSNGHKQLMCLARSILSKAKILLLDEPSAH 1383
Query: 326 LDSTTALRIVQMLQDIAEAGKTVVTTIHQ 354
LD T L+I++ + + TV+ + H+
Sbjct: 1384 LDPVT-LQIIRKTLKQSFSNCTVILSEHR 1411
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|185049 PRK15093, PRK15093, antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 2e-04
Identities = 32/117 (27%), Positives = 61/117 (52%), Gaps = 8/117 (6%)
Query: 267 KEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGL 326
+++RAI++++ +G++ +D M SF ++ GE ++V I + P LL DEPT+ +
Sbjct: 132 RKRRAIELLHRVGIKDHKDAM--RSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAM 189
Query: 327 DSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383
+ TT +I ++L + + T + I L DK+ ++LY G+ E
Sbjct: 190 EPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKI------NVLYCGQTVET 240
|
Length = 330 |
| >gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter proteins | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 2e-04
Identities = 22/97 (22%), Positives = 34/97 (35%), Gaps = 6/97 (6%)
Query: 279 GLERCQDTMIGGSFVRGVSGGERKRVCI----GNEIIINPSLLFLDEPTSGLDSTTALRI 334
G + +SGGE++ + + L LDE GLD +
Sbjct: 61 GCIVAAVSAELIFTRLQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQAL 120
Query: 335 VQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 371
+ + + G V+ H P L DKLI + K
Sbjct: 121 AEAILEHLVKGAQVIVITHLP--ELAELADKLIHIKK 155
|
ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. Length = 162 |
| >gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter | Back alignment and domain information |
|---|
Score = 43.8 bits (103), Expect = 3e-04
Identities = 45/208 (21%), Positives = 81/208 (38%), Gaps = 21/208 (10%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIG 232
L I + G+++ ++G +G GK+TL L G L P G I + S
Sbjct: 358 LGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCG-LYIPQ-EGEILLDGAAVSAD------ 409
Query: 233 FVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKE-KRAIDVINELGLERCQDTMIGG- 290
++DD + L + L + A + L + GG
Sbjct: 410 --SRDD--YRDLFSAIFADFHLFDDLIGPDEGEHASLDNAQQYLQRLEIADKVKIEDGGF 465
Query: 291 SFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIV---QMLQDIAEAGKT 347
S +S G++KR+ + + + +L DE + D A + ++L D+ GKT
Sbjct: 466 STTTALSTGQQKRLALICAWLEDRPILLFDEWAA--DQDPAFKRFFYEELLPDLKRQGKT 523
Query: 348 VVTTIHQPSSRLFHKFDKLILLGKGSLL 375
++ H + F D++I L G ++
Sbjct: 524 IIIISH--DDQYFELADQIIKLAAGCIV 549
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other]. Length = 555 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 4e-04
Identities = 18/46 (39%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVG 213
+ K ++ + V G+ +AL+GP+G GKTTLL L+ G+L + G
Sbjct: 330 DGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQL-QADSG 374
|
Length = 635 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 42.7 bits (100), Expect = 8e-04
Identities = 58/243 (23%), Positives = 111/243 (45%), Gaps = 26/243 (10%)
Query: 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME 209
+KF DV + +L+G++ V+P E + ++G +G+GK+++LN L R++E
Sbjct: 1235 IKFEDVHLRY------RPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALF-RIVE 1287
Query: 210 PTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQ 265
G I +D +K L+ + + Q VLF TV+ + + + L +
Sbjct: 1288 -LEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSG-TVRFNIDPFSEHNDAD-LWEA 1344
Query: 266 QKEKRAIDVI--NELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPT 323
+ DVI N GL+ + + G +F S G+R+ + + ++ +L LDE T
Sbjct: 1345 LERAHIKDVIDRNPFGLD-AEVSEGGENF----SVGQRQLLSLARALLRRSKILVLDEAT 1399
Query: 324 SGLDSTTALRIVQMLQ-DIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382
+ +D +R ++Q I E K+ + DK+++L G +L + E
Sbjct: 1400 ASVD----VRTDSLIQRTIREEFKSCTMLVIAHRLNTIIDCDKILVLSSGQVLEYDSPQE 1455
Query: 383 AMA 385
++
Sbjct: 1456 LLS 1458
|
Length = 1495 |
| >gnl|CDD|217416 pfam03193, DUF258, Protein of unknown function, DUF258 | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 0.001
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 183 GEVLALMGPSGSGKTTLLNLLSGRL 207
G+ L G SG GK+TLLN L L
Sbjct: 35 GKTSVLAGQSGVGKSTLLNALLPEL 59
|
Length = 161 |
| >gnl|CDD|206747 cd01854, YjeQ_EngC, Ribosomal interacting GTPase YjeQ/EngC, a circularly permuted subfamily of the Ras GTPases | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 0.002
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 183 GEVLALMGPSGSGKTTLLNLLSGRL 207
G+ L+G SG GK+TLLN L L
Sbjct: 85 GKTSVLVGQSGVGKSTLLNALLPEL 109
|
YjeQ (YloQ in Bacillus subtilis) is a ribosomal small subunit-dependent GTPase; hence also known as RsgA. YjeQ is a late-stage ribosomal biogenesis factor involved in the 30S subunit maturation, and it represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. Length = 211 |
| >gnl|CDD|213238 cd03271, ABC_UvrA_II, ATP-binding cassette domain II of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 0.002
Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
Query: 297 SGGERKRVCIGNEIIINPS----LLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTI 352
SGGE +R+ + E+ S L LDEPT+GL +++++LQ + + G TVV
Sbjct: 171 SGGEAQRIKLAKELS-KRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIE 229
Query: 353 HQ 354
H
Sbjct: 230 HN 231
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 261 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.003
Identities = 41/186 (22%), Positives = 85/186 (45%), Gaps = 19/186 (10%)
Query: 176 ITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS-----KSLKSK 230
I+ SV GE++ L G G+G++ L+ LL G G + + P ++++
Sbjct: 272 ISFSVRAGEIVGLFGLVGAGRSELMKLLYG--ATRRTAGQVYLDGKPIDIRSPRDAIRAG 329
Query: 231 IGFVTQD---DVLFPHLTVKETLTYAA---LLRLPNTLTKQQKEKRAIDVINELGLE-RC 283
I +D + + P +V + + +A LR + + + + A I L ++
Sbjct: 330 IMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPS 389
Query: 284 QDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE 343
++ +I +SGG +++ +G + + ++ LDEPT G+D I ++ ++A
Sbjct: 390 REQLI-----MNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAA 444
Query: 344 AGKTVV 349
G V+
Sbjct: 445 QGVAVL 450
|
Length = 501 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 40.5 bits (96), Expect = 0.003
Identities = 47/178 (26%), Positives = 75/178 (42%), Gaps = 64/178 (35%)
Query: 179 SVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQD- 237
S+ PG ++ ++GP+G+GK+TL +++G+ E G+I + K+ +V Q
Sbjct: 346 SLPPGGIVGIIGPNGAGKSTLFKMITGQ--EQPDSGTIKIGE-------TVKLAYVDQSR 396
Query: 238 DVLFPHLTVKETLTYAA-LLRLPNTLTK--------------QQKEKRAIDVINELGLER 282
D L P+ TV E ++ ++++ N QQK
Sbjct: 397 DALDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGGDQQK--------------- 441
Query: 283 CQDTMIGGSFVRGVSGGERKRVCI-------GNEIIINPSLLFLDEPTSGLDSTTALR 333
V +SGGER R+ + GN +L LDEPT+ LD T LR
Sbjct: 442 ---------KVGVLSGGERNRLHLAKTLKQGGN-------VLLLDEPTNDLDVET-LR 482
|
Length = 556 |
| >gnl|CDD|222036 pfam13304, AAA_21, AAA domain | Back alignment and domain information |
|---|
Score = 39.7 bits (92), Expect = 0.003
Identities = 18/68 (26%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Query: 292 FVRGVSGGERKRVCIGNEII---INPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTV 348
++G+S G ++ + + ++ SLL +DEP +GL ++V++L++++E G +
Sbjct: 186 LIKGISDGTKRLLALLLALLSALPKGSLLLIDEPENGLHPKLLRKLVELLKELSEKGAQL 245
Query: 349 VTTIHQPS 356
+ T H P
Sbjct: 246 IFTTHSPL 253
|
Length = 256 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 0.004
Identities = 41/156 (26%), Positives = 68/156 (43%), Gaps = 26/156 (16%)
Query: 186 LALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLT 245
+A++GP+G GK+T+L L+SG L +P+ G +S K ++ +Q V L+
Sbjct: 538 IAMVGPNGIGKSTILKLISGEL-QPSSGTVF--------RSAKVRMAVFSQHHVDGLDLS 588
Query: 246 VKETLTYAALLRLPNTLTKQQKEKR---AIDVINELGLERCQDTMIGGSFVRGVSGGERK 302
L P +QK + + V L L+ + +SGG++
Sbjct: 589 SNPLLYMMRC--FPGVP--EQKLRAHLGSFGVTGNLALQP----------MYTLSGGQKS 634
Query: 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQML 338
RV P +L LDEP++ LD ++Q L
Sbjct: 635 RVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGL 670
|
Length = 718 |
| >gnl|CDD|234988 PRK01889, PRK01889, GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 0.004
Identities = 15/42 (35%), Positives = 27/42 (64%)
Query: 165 TSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGR 206
S+ + + L+ + ++ G+ +AL+G SG GK+TL+N L G
Sbjct: 177 VSALDGEGLDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGE 218
|
Length = 356 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 746 | |||
| PLN03211 | 659 | ABC transporter G-25; Provisional | 100.0 | |
| KOG0061 | 613 | consensus Transporter, ABC superfamily (Breast can | 100.0 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 100.0 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 100.0 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 100.0 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| cd03217 | 200 | ABC_FeS_Assembly ABC-type transport system involve | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 100.0 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| COG4161 | 242 | ArtP ABC-type arginine transport system, ATPase co | 100.0 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 100.0 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 100.0 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 100.0 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 100.0 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 100.0 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 100.0 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 100.0 | |
| PRK13546 | 264 | teichoic acids export protein ATP-binding subunit; | 100.0 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 100.0 | |
| cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II | 100.0 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 100.0 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 100.0 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 100.0 | |
| PRK13545 | 549 | tagH teichoic acids export protein ATP-binding sub | 100.0 | |
| TIGR03771 | 223 | anch_rpt_ABC anchored repeat-type ABC transporter, | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| COG4148 | 352 | ModC ABC-type molybdate transport system, ATPase c | 100.0 | |
| cd03214 | 180 | ABC_Iron-Siderophores_B12_Hemin ABC transporters, | 100.0 | |
| COG0396 | 251 | sufC Cysteine desulfurase activator ATPase [Posttr | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 100.0 | |
| PRK13541 | 195 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| cd03228 | 171 | ABCC_MRP_Like The MRP (Mutidrug Resistance Protein | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| TIGR01187 | 325 | potA spermidine/putrescine ABC transporter ATP-bin | 100.0 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 100.0 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 100.0 | |
| COG4619 | 223 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| PRK10535 | 648 | macrolide transporter ATP-binding /permease protei | 100.0 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| COG1119 | 257 | ModF ABC-type molybdenum transport system, ATPase | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| PRK15177 | 213 | Vi polysaccharide export ATP-binding protein VexC; | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| COG4608 | 268 | AppF ABC-type oligopeptide transport system, ATPas | 100.0 | |
| cd03237 | 246 | ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o | 100.0 | |
| COG4674 | 249 | Uncharacterized ABC-type transport system, ATPase | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| cd03236 | 255 | ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| COG4586 | 325 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| COG1101 | 263 | PhnK ABC-type uncharacterized transport system, AT | 100.0 | |
| COG4136 | 213 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| cd03221 | 144 | ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is | 100.0 | |
| COG1134 | 249 | TagH ABC-type polysaccharide/polyol phosphate tran | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| cd03238 | 176 | ABC_UvrA The excision repair protein UvrA; Nucleot | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| cd03222 | 177 | ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| COG4167 | 267 | SapF ABC-type antimicrobial peptide transport syst | 100.0 | |
| KOG0059 | 885 | consensus Lipid exporter ABCA1 and related protein | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| cd00267 | 157 | ABC_ATPase ABC (ATP-binding cassette) transporter | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 99.98 | |
| COG4107 | 258 | PhnK ABC-type phosphonate transport system, ATPase | 99.97 | |
| COG4133 | 209 | CcmA ABC-type transport system involved in cytochr | 99.97 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 99.97 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 99.97 | |
| COG4778 | 235 | PhnL ABC-type phosphonate transport system, ATPase | 99.97 | |
| cd03270 | 226 | ABC_UvrA_I The excision repair protein UvrA domain | 99.97 | |
| PF00005 | 137 | ABC_tran: ABC transporter This structure is on hol | 99.97 | |
| cd03271 | 261 | ABC_UvrA_II The excision repair protein UvrA domai | 99.97 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 99.96 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 99.96 | |
| COG4138 | 248 | BtuD ABC-type cobalamin transport system, ATPase c | 99.95 | |
| cd03278 | 197 | ABC_SMC_barmotin Barmotin is a tight junction-asso | 99.95 | |
| cd03274 | 212 | ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein | 99.94 | |
| cd03272 | 243 | ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein | 99.94 | |
| cd03273 | 251 | ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein | 99.93 | |
| cd03279 | 213 | ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex | 99.93 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 99.93 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 99.93 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 99.93 | |
| cd03240 | 204 | ABC_Rad50 The catalytic domains of Rad50 are simil | 99.92 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 99.92 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 99.92 | |
| COG4170 | 330 | SapD ABC-type antimicrobial peptide transport syst | 99.91 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 99.91 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 99.9 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 99.9 | |
| cd03276 | 198 | ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein | 99.88 | |
| KOG0060 | 659 | consensus Long-chain acyl-CoA transporter, ABC sup | 99.88 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.87 | |
| cd03275 | 247 | ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein | 99.87 | |
| KOG2355 | 291 | consensus Predicted ABC-type transport, ATPase com | 99.86 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 99.86 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 99.84 | |
| cd03277 | 213 | ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC protein | 99.83 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 99.82 | |
| cd03280 | 200 | ABC_MutS2 MutS2 homologs in bacteria and eukaryote | 99.82 | |
| PF01061 | 210 | ABC2_membrane: ABC-2 type transporter; InterPro: I | 99.82 | |
| cd03239 | 178 | ABC_SMC_head The structural maintenance of chromos | 99.8 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.79 | |
| cd03283 | 199 | ABC_MutS-like MutS-like homolog in eukaryotes. The | 99.78 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 99.78 | |
| COG0178 | 935 | UvrA Excinuclease ATPase subunit [DNA replication, | 99.78 | |
| cd03285 | 222 | ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS | 99.77 | |
| cd03241 | 276 | ABC_RecN RecN ATPase involved in DNA repair; ABC ( | 99.77 | |
| KOG0064 | 728 | consensus Peroxisomal long-chain acyl-CoA transpor | 99.77 | |
| COG2401 | 593 | ABC-type ATPase fused to a predicted acetyltransfe | 99.76 | |
| cd03227 | 162 | ABC_Class2 ABC-type Class 2 contains systems invol | 99.74 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 99.73 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 99.72 | |
| cd03242 | 270 | ABC_RecF RecF is a recombinational DNA repair ATPa | 99.7 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 99.68 | |
| cd03243 | 202 | ABC_MutS_homologs The MutS protein initiates DNA m | 99.68 | |
| cd03282 | 204 | ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS | 99.62 | |
| cd03284 | 216 | ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr | 99.61 | |
| KOG0063 | 592 | consensus RNAse L inhibitor, ABC superfamily [RNA | 99.57 | |
| TIGR02858 | 270 | spore_III_AA stage III sporulation protein AA. Mem | 99.56 | |
| PRK00064 | 361 | recF recombination protein F; Reviewed | 99.46 | |
| smart00534 | 185 | MUTSac ATPase domain of DNA mismatch repair MUTS f | 99.44 | |
| PF02463 | 220 | SMC_N: RecF/RecN/SMC N terminal domain; InterPro: | 99.42 | |
| cd03281 | 213 | ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS | 99.41 | |
| cd00820 | 107 | PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC | 99.41 | |
| TIGR01069 | 771 | mutS2 MutS2 family protein. Function of MutS2 is u | 99.37 | |
| TIGR01247 | 236 | drrB daunorubicin resistance ABC transporter membr | 99.35 | |
| cd01128 | 249 | rho_factor Transcription termination factor rho is | 99.34 | |
| PTZ00132 | 215 | GTP-binding nuclear protein Ran; Provisional | 99.32 | |
| TIGR03062 | 208 | pip_yhgE_Cterm YhgE/Pip C-terminal domain. This fa | 99.31 | |
| cd03287 | 222 | ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS | 99.28 | |
| KOG0063 | 592 | consensus RNAse L inhibitor, ABC superfamily [RNA | 99.27 | |
| TIGR01291 | 253 | nodJ ABC-2 type transporter, NodJ family. Nearly a | 99.25 | |
| TIGR00634 | 563 | recN DNA repair protein RecN. All proteins in this | 99.24 | |
| TIGR03861 | 253 | phenyl_ABC_PedC alcohol ABC transporter, permease | 99.22 | |
| PRK07721 | 438 | fliI flagellum-specific ATP synthase; Validated | 99.22 | |
| PRK10869 | 553 | recombination and repair protein; Provisional | 99.21 | |
| PHA02562 | 562 | 46 endonuclease subunit; Provisional | 99.21 | |
| COG0178 | 935 | UvrA Excinuclease ATPase subunit [DNA replication, | 99.19 | |
| TIGR00618 | 1042 | sbcc exonuclease SbcC. This family is based on the | 99.19 | |
| TIGR00025 | 232 | Mtu_efflux ABC transporter efflux protein, DrrB fa | 99.19 | |
| PRK00409 | 782 | recombination and DNA strand exchange inhibitor pr | 99.19 | |
| cd03286 | 218 | ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS | 99.13 | |
| PRK08533 | 230 | flagellar accessory protein FlaH; Reviewed | 99.12 | |
| PF13304 | 303 | AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T | 99.11 | |
| cd01124 | 187 | KaiC KaiC is a circadian clock protein primarily f | 99.11 | |
| PRK13695 | 174 | putative NTPase; Provisional | 99.07 | |
| COG3910 | 233 | Predicted ATPase [General function prediction only | 99.03 | |
| PRK03918 | 880 | chromosome segregation protein; Provisional | 99.02 | |
| TIGR00606 | 1311 | rad50 rad50. This family is based on the phylogeno | 99.0 | |
| PRK13830 | 818 | conjugal transfer protein TrbE; Provisional | 98.99 | |
| PRK15066 | 257 | inner membrane transport permease; Provisional | 98.98 | |
| PRK10246 | 1047 | exonuclease subunit SbcC; Provisional | 98.98 | |
| TIGR02788 | 308 | VirB11 P-type DNA transfer ATPase VirB11. The VirB | 98.96 | |
| cd01120 | 165 | RecA-like_NTPases RecA-like NTPases. This family i | 98.94 | |
| PRK06793 | 432 | fliI flagellum-specific ATP synthase; Validated | 98.92 | |
| PRK01156 | 895 | chromosome segregation protein; Provisional | 98.9 | |
| cd01131 | 198 | PilT Pilus retraction ATPase PilT. PilT is a nucle | 98.86 | |
| PRK06067 | 234 | flagellar accessory protein FlaH; Validated | 98.85 | |
| TIGR02168 | 1179 | SMC_prok_B chromosome segregation protein SMC, com | 98.81 | |
| cd01125 | 239 | repA Hexameric Replicative Helicase RepA. RepA is | 98.74 | |
| TIGR02169 | 1164 | SMC_prok_A chromosome segregation protein SMC, pri | 98.72 | |
| PRK06995 | 484 | flhF flagellar biosynthesis regulator FlhF; Valida | 98.72 | |
| PRK02224 | 880 | chromosome segregation protein; Provisional | 98.71 | |
| TIGR03238 | 504 | dnd_assoc_3 dnd system-associated protein 3. cereu | 98.69 | |
| smart00382 | 148 | AAA ATPases associated with a variety of cellular | 98.67 | |
| COG0842 | 286 | ABC-type multidrug transport system, permease comp | 98.67 | |
| TIGR01420 | 343 | pilT_fam pilus retraction protein PilT. This model | 98.54 | |
| PRK13891 | 852 | conjugal transfer protein TrbE; Provisional | 98.51 | |
| TIGR01248 | 152 | drrC daunorubicin resistance protein C. The model | 98.49 | |
| TIGR00611 | 365 | recf recF protein. All proteins in this family for | 98.47 | |
| TIGR03881 | 229 | KaiC_arch_4 KaiC domain protein, PAE1156 family. M | 98.46 | |
| PRK14079 | 349 | recF recombination protein F; Provisional | 98.45 | |
| TIGR02655 | 484 | circ_KaiC circadian clock protein KaiC. Members of | 98.45 | |
| TIGR01026 | 440 | fliI_yscN ATPase FliI/YscN family. This family of | 98.44 | |
| cd01130 | 186 | VirB11-like_ATPase Type IV secretory pathway compo | 98.4 | |
| PRK07196 | 434 | fliI flagellum-specific ATP synthase; Validated | 98.39 | |
| COG0419 | 908 | SbcC ATPase involved in DNA repair [DNA replicatio | 98.38 | |
| cd02023 | 198 | UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1. | 98.33 | |
| PRK06002 | 450 | fliI flagellum-specific ATP synthase; Validated | 98.3 | |
| PRK05399 | 854 | DNA mismatch repair protein MutS; Provisional | 98.29 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 98.22 | |
| TIGR02680 | 1353 | conserved hypothetical protein TIGR02680. Members | 98.2 | |
| PRK13898 | 800 | type IV secretion system ATPase VirB4; Provisional | 98.2 | |
| PRK09825 | 176 | idnK D-gluconate kinase; Provisional | 98.14 | |
| cd01122 | 271 | GP4d_helicase GP4d_helicase is a homohexameric 5'- | 98.12 | |
| PRK13873 | 811 | conjugal transfer ATPase TrbE; Provisional | 98.1 | |
| cd00009 | 151 | AAA The AAA+ (ATPases Associated with a wide varie | 97.99 | |
| TIGR00767 | 415 | rho transcription termination factor Rho. Members | 97.98 | |
| COG1682 | 263 | TagG ABC-type polysaccharide/polyol phosphate expo | 97.97 | |
| PRK06315 | 442 | type III secretion system ATPase; Provisional | 97.96 | |
| PRK00454 | 196 | engB GTP-binding protein YsxC; Reviewed | 97.96 | |
| PF13555 | 62 | AAA_29: P-loop containing region of AAA domain | 97.95 | |
| TIGR03518 | 240 | ABC_perm_GldF gliding motility-associated ABC tran | 97.95 | |
| PF13558 | 90 | SbcCD_C: Putative exonuclease SbcCD, C subunit; PD | 97.94 | |
| PRK01889 | 356 | GTPase RsgA; Reviewed | 97.93 | |
| TIGR00416 | 454 | sms DNA repair protein RadA. The gene protuct code | 97.92 | |
| PF12698 | 344 | ABC2_membrane_3: ABC-2 family transporter protein; | 97.9 | |
| PRK09270 | 229 | nucleoside triphosphate hydrolase domain-containin | 97.89 | |
| PF09818 | 448 | ABC_ATPase: Predicted ATPase of the ABC class; Int | 97.87 | |
| cd01876 | 170 | YihA_EngB The YihA (EngB) subfamily. This subfamil | 97.87 | |
| PRK03846 | 198 | adenylylsulfate kinase; Provisional | 97.84 |
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-104 Score=931.82 Aligned_cols=575 Identities=49% Similarity=0.875 Sum_probs=481.3
Q ss_pred CCceEEEEeEEEEEeeccc-c--------------------ccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHH
Q 004537 146 LPIYLKFTDVTYKVILKGM-T--------------------SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLS 204 (746)
Q Consensus 146 ~~~~l~~~nvs~~~~~~~~-~--------------------~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~ 204 (746)
.+..++|.|++|+....+. . ..+++.+|+|+|+++++||++||+||||||||||||+|+
T Consensus 36 ~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLa 115 (659)
T PLN03211 36 YPITLKFMDVCYRVKFENMKNKGSNIKRILGHKPKISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALA 115 (659)
T ss_pred CceEEEEEeEEEEEccCCCcccccccccccccccccccccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHh
Confidence 3568999999998754320 0 113567999999999999999999999999999999999
Q ss_pred cCCCCCCCccEEEECCEeCChhccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccc
Q 004537 205 GRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ 284 (746)
Q Consensus 205 G~~~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~ 284 (746)
|+......+|+|.+||+++....+++++||+|++.+++.+||+||+.+++.++.+...++++++++++++++.+||+++.
T Consensus 116 G~~~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~ 195 (659)
T PLN03211 116 GRIQGNNFTGTILANNRKPTKQILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCE 195 (659)
T ss_pred CCCCCCceeEEEEECCEECchhhccceEEECcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhc
Confidence 97642224899999999987666678999999999999999999999998777665556667778899999999999999
Q ss_pred cccccCccccCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccC
Q 004537 285 DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFD 364 (746)
Q Consensus 285 ~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D 364 (746)
|+.+|+...++|||||||||+||++|+.+|+||||||||+|||+.++.++++.|++++++|+|||+++|||+.++++.||
T Consensus 196 ~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D 275 (659)
T PLN03211 196 NTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFD 275 (659)
T ss_pred CceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhc
Confidence 99999988999999999999999999999999999999999999999999999999988899999999999877889999
Q ss_pred EEEEEeCCeEEEecCHHHHHHHHHhcCCCCCCCCChHHHHHHhhcCCCCCCCCChhhhhhhhcccccccccCCCCChhhH
Q 004537 365 KLILLGKGSLLYFGKASEAMAYFSSIGCSPQIAMNPAEFLLDLANGNLHDVSVPSELQDRVQTENSENDTANGKPTPAIV 444 (746)
Q Consensus 365 ~i~vL~~G~iv~~G~~~~~~~~f~~~G~~~~~~~npad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (746)
++++|++|++++.|+++++.+||+++|++||.+.|||||++|+++.+......... . . ...
T Consensus 276 ~iilL~~G~iv~~G~~~~~~~~f~~~G~~~P~~~NpADf~ldv~~~~~~~~~~~~~---------~-------~---~~~ 336 (659)
T PLN03211 276 SVLVLSEGRCLFFGKGSDAMAYFESVGFSPSFPMNPADFLLDLANGVCQTDGVSER---------E-------K---PNV 336 (659)
T ss_pred eEEEecCCcEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHcCccccCCCcccc---------c-------c---chH
Confidence 99999999999999999999999999999999999999999998754211000000 0 0 001
Q ss_pred HHHHHHHHHHhHHHHHHhhh--c-CCCCCcHHh---hhhc-CCCCCCcCCcHHHHHHHHHHHHHHHhhcchhHHHHHHHH
Q 004537 445 HEYLVEAYETRVAENEKKKL--M-APIPLDEEI---KAKV-SSPKRNWGASWIQQYTILFRRGIKEHRHDYFSWLRITQV 517 (746)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~---~~~~-~~~~~~~~~s~~~Q~~~L~~R~~~~~R~~~~~~~r~~~~ 517 (746)
.+.+.+.|++.......... . ......+.. ..+. ....+.+.++||+|+.+|++|+++++|++.+.++|+++.
T Consensus 337 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~~r~~~~~~~r~~~~ 416 (659)
T PLN03211 337 KQSLVASYNTLLAPKVKAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQFSILLQRSLKERKHESFNTLRVFQV 416 (659)
T ss_pred HHHHHHHHHhhccHHHHHHHhhhhhhcchhhhhhcccccccccCCCccCCCHHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 11222233221110000000 0 000000000 0000 011123457899999999999999999998888999999
Q ss_pred HHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHhhCCCCChHHHHHHHHHHHHHH
Q 004537 518 LATAVILGLLWWQSDSKSPKGLEDQAGLLFFIAVFWSFFPIFTAIFTFPQERAMLSKERAADMYRLSAYFLARTTSDLPL 597 (746)
Q Consensus 518 i~~ali~G~lf~~~~~~~~~~~~~~~g~lff~~~~~~~~~~~~~i~~~~~eR~v~~rEr~~g~Y~~~ay~la~~l~~lP~ 597 (746)
+++|+++|++||+++ +.++++|.|++||+++++++.+++.+++.|+.||++|+|||.+|+|++++|++|++++|+|+
T Consensus 417 i~~~ll~G~lf~~~~---~~~~~~r~g~lff~~~~~~~~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~Y~la~~l~elP~ 493 (659)
T PLN03211 417 IAAALLAGLMWWHSD---FRDVQDRLGLLFFISIFWGVFPSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPM 493 (659)
T ss_pred HHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999984 57899999999999999888888899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcccCCCcc
Q 004537 598 NLVLPVLFLVIVYFMAGLRMGAGPFFLSMLTVFLSIVAAQGLGLAIGAILMDLKKATTLASVTIMTFMLAGGYFVQEVPV 677 (746)
Q Consensus 598 ~~~~~~if~~ivY~m~gl~~~~~~Ff~f~l~~~l~~~~~~slg~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~ip~ 677 (746)
.++.+++|++|+|||+||++++++||+|+++++++.++++++|+++++++||...|+.+++++++++++|+||++++||+
T Consensus 494 ~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~li~~l~~~~~~s~g~~i~a~~~~~~~a~~~~~~~~~~~~lfsGf~i~~ip~ 573 (659)
T PLN03211 494 ELILPTIFLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMDAKKASTIVTVTMLAFVLTGGFYVHKLPS 573 (659)
T ss_pred HHHHHHHHHhheeEcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhhhHhhchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhccCHHHHHHHHHHHHHcCCCCC-----CCC----------------CcccCchhhhHHHHHHHHHHHHHHHHHH
Q 004537 678 FISWIRYMSFNFHTYKILLKIQYADISP-----IVN----------------GMRTDSGFREVCALVAMVFGYRLLAYLS 736 (746)
Q Consensus 678 ~~~Wl~yiS~~~yafeal~~nef~~~~~-----~~~----------------g~~~~~~~~~~~iL~~~~~~f~~l~~~~ 736 (746)
||+|++|+||++||||+++.|||++... .+. +.+....|.++++|++++++||+++|++
T Consensus 574 ~~~W~~ylS~~~y~~eal~~nef~~~~~~~~~~~C~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~ 653 (659)
T PLN03211 574 CMAWIKYISTTFYSYRLLINVQYGEGKRISSLLGCSLPHGSDRASCKFVEEDVAGQISPATSVSVLIFMFVGYRLLAYLA 653 (659)
T ss_pred HHHHHHHhCHHHHHHHHHHHHhcCCccccccccCCCCcccCCCCCCccchhhhhcccchHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999975321 010 1112346789999999999999999999
Q ss_pred HHHhhh
Q 004537 737 LRKMKL 742 (746)
Q Consensus 737 L~~~~~ 742 (746)
||++++
T Consensus 654 L~~~~~ 659 (659)
T PLN03211 654 LRRIKH 659 (659)
T ss_pred HHhccC
Confidence 997663
|
|
| >KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-103 Score=911.63 Aligned_cols=566 Identities=43% Similarity=0.737 Sum_probs=489.0
Q ss_pred CceEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCC-CCccEEEECCEeCC-
Q 004537 147 PIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP-TVGGSITYNDHPYS- 224 (746)
Q Consensus 147 ~~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~-~~~G~I~~~G~~~~- 224 (746)
+..++|+|+++....+. +..+++|+|||++++|||++|||||||||||||||+|+||.... ..+|+|++||++..
T Consensus 23 ~~~~~~~~~~~~~~~~~---~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~ 99 (613)
T KOG0061|consen 23 PVKLSFRNLTLSSKEKS---KKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDS 99 (613)
T ss_pred cceeEEEEEEEEecCCC---CccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCch
Confidence 45799999998874321 14588999999999999999999999999999999999998653 57899999997765
Q ss_pred hhccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHH
Q 004537 225 KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (746)
Q Consensus 225 ~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv 304 (746)
+.+++.+|||.|||.++|++||+|+|.|.+.+|+|+..++++++++|+++++++||.+|+||++|+...|++||||||||
T Consensus 100 ~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRv 179 (613)
T KOG0061|consen 100 RSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRV 179 (613)
T ss_pred hhhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHH
Confidence 45788899999999999999999999999999999989999999999999999999999999999988899999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHH
Q 004537 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (746)
Q Consensus 305 ~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (746)
+||.+|+.||+||+|||||||||+.++.++++.|+++|++|+|||+++|||+.+++++||++++|.+|+++|+|+++++.
T Consensus 180 sia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~~~~ 259 (613)
T KOG0061|consen 180 SIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPRELL 259 (613)
T ss_pred HHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCCCCChHHHHHHhhcCCCCCCCCChhhhhhhhcccccccccCCCCChhhHHHHHHHHHHHhHHHHHHhhh
Q 004537 385 AYFSSIGCSPQIAMNPAEFLLDLANGNLHDVSVPSELQDRVQTENSENDTANGKPTPAIVHEYLVEAYETRVAENEKKKL 464 (746)
Q Consensus 385 ~~f~~~G~~~~~~~npad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (746)
+||+++|++||++.||+||++|+++.+ .. ..+..+..+...... ..+. +. ...+... ++. +..
T Consensus 260 ~ff~~~G~~~P~~~Npadf~l~l~s~~-~~---~~~~~~~~~~~~~~~-~~~~-~~--~~~~~~~-~~~--------~~~ 322 (613)
T KOG0061|consen 260 EFFSSLGFPCPELENPADFLLDLLSVD-SG---TRELEEAVRIAKLIN-KFSQ-TD--NLKKTLE-ALE--------KSL 322 (613)
T ss_pred HHHHhCCCCCCCcCChHHHHHHHHccC-CC---chhHHhHHHHHHHhh-hccc-cc--hhhhhHH-HHh--------hhc
Confidence 999999999999999999999998854 10 011110000000000 0000 00 0000000 000 000
Q ss_pred cCCCCCcHHhhhhcCCCCCCcCCcHHHHHHHHHHHHHHH-hhcchhHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHH
Q 004537 465 MAPIPLDEEIKAKVSSPKRNWGASWIQQYTILFRRGIKE-HRHDYFSWLRITQVLATAVILGLLWWQSDSKSPKGLEDQA 543 (746)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~-~R~~~~~~~r~~~~i~~ali~G~lf~~~~~~~~~~~~~~~ 543 (746)
.... .......++||.|+++|++|.+++ .|++.+.+.|+++.+++|+++|++||+++. +..+++++.
T Consensus 323 ~~~~-----------~~~~~~~~s~~~q~~~L~~R~~~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~~-~~~~~~~~~ 390 (613)
T KOG0061|consen 323 STSK-----------KVEIGTSPSWWTQFKILLKRSLKNIRRDPSLLLLRLIQSLVTGLLLGLLYLNLGN-DAKGIQNRL 390 (613)
T ss_pred cccc-----------ccccccCCcHHHHHHHHHHHHhHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCC-chHHHHHHH
Confidence 0000 000011679999999999999997 677889999999999999999999999965 678889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCChHHHH
Q 004537 544 GLLFFIAVFWSFFPIFTAIFTFPQERAMLSKERAADMYRLSAYFLARTTSDLPLNLVLPVLFLVIVYFMAGLRMGAGPFF 623 (746)
Q Consensus 544 g~lff~~~~~~~~~~~~~i~~~~~eR~v~~rEr~~g~Y~~~ay~la~~l~~lP~~~~~~~if~~ivY~m~gl~~~~~~Ff 623 (746)
|++||++.++.|.+++++++.|++||++|.||+.+|+|+.++||+|++++++|+.++.+++|++|+|||+|+++++.+|+
T Consensus 391 g~~~~~~~~~~f~~~~~~i~~f~~e~~~f~rE~~~~~Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~ 470 (613)
T KOG0061|consen 391 GLFFFILSFMTFLSMFGAVPVFPQERPIFLRETSSGLYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFL 470 (613)
T ss_pred HHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHH
Confidence 99999999998999888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcccC--CCccchhhhhccCHHHHHHHHHHHHHcC
Q 004537 624 LSMLTVFLSIVAAQGLGLAIGAILMDLKKATTLASVTIMTFMLAGGYFVQ--EVPVFISWIRYMSFNFHTYKILLKIQYA 701 (746)
Q Consensus 624 ~f~l~~~l~~~~~~slg~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~--~ip~~~~Wl~yiS~~~yafeal~~nef~ 701 (746)
+|++++++..++++++|+++++++||...|+.+++++++++++|+|||++ .+|.||+|++|+||++|+||+++.|||.
T Consensus 471 ~~~l~~~~~~~~a~s~~~~i~~~~~~~~~a~~~~~~~~~~f~l~~G~fi~~~~ip~~~~w~~~~S~~ry~~e~l~~n~~~ 550 (613)
T KOG0061|consen 471 YFLLIILLSSLVAESLGLFISAIVPNLSLATSLGPVLLLPFLLFGGFFINFDSIPKYFRWISYLSYFRYAFEALLINQFS 550 (613)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhheeehHHHHHHHHHHHhhhhcCcccccHHHHHHHHHhHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999998 8999999999999999999999999998
Q ss_pred C-CC-C--------C--------CCCcccCchhhhHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 004537 702 D-IS-P--------I--------VNGMRTDSGFREVCALVAMVFGYRLLAYLSLRKMKLHF 744 (746)
Q Consensus 702 ~-~~-~--------~--------~~g~~~~~~~~~~~iL~~~~~~f~~l~~~~L~~~~~~~ 744 (746)
+ .. . . ..+++..+.|.|+.++++++++||+++|++||+..++.
T Consensus 551 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~~~~~~~il~y~~L~~~~~~~ 611 (613)
T KOG0061|consen 551 GGSSRCFLSGNLCCESTGEDVLKQLGFEDSSFWLDLLVLLAFIVFFRVLGYLALRFRVKRK 611 (613)
T ss_pred ccccccccCcCCcccccHHHHHHhcCCcccccchhHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 5 11 0 0 11233456789999999999999999999999887764
|
|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-99 Score=883.88 Aligned_cols=570 Identities=34% Similarity=0.574 Sum_probs=478.2
Q ss_pred eEEEEeEEEEEeeccc-cccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCC-CCccEEEECCEeCC-h
Q 004537 149 YLKFTDVTYKVILKGM-TSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP-TVGGSITYNDHPYS-K 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~-~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~-~~~G~I~~~G~~~~-~ 225 (746)
+++|.++. ++..... ++++++++|+|+|++++|||+++|+|||||||||||++|+|+.... ..+|+|.+||.+++ .
T Consensus 17 ~~~~~~~~-~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~ 95 (617)
T TIGR00955 17 DGSWKQLV-SRLRGCFCRERPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAK 95 (617)
T ss_pred cchhhhhh-hhcccccccccCccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHH
Confidence 45666665 4322111 1234678999999999999999999999999999999999976422 24799999999986 3
Q ss_pred hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCcc-ccCCCHHHHHHH
Q 004537 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSF-VRGVSGGERKRV 304 (746)
Q Consensus 226 ~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~-~~~LSGGerqRv 304 (746)
.+++.+|||+|+|.+++.+||+|||.|++.++.+...++++++++++++++.+||.+++|+.+|+.. .++|||||||||
T Consensus 96 ~~~~~i~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRv 175 (617)
T TIGR00955 96 EMRAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRL 175 (617)
T ss_pred HHhhhceeeccccccCccCcHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHH
Confidence 5678899999999999999999999999998887777778888899999999999999999999753 678999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHH
Q 004537 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (746)
Q Consensus 305 ~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (746)
+||++|+.+|++++|||||+|||+.++.++++.|++++++|+|||+++|||+.++++.||++++|++|+++|.|+++++.
T Consensus 176 sia~aL~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~ 255 (617)
T TIGR00955 176 AFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAV 255 (617)
T ss_pred HHHHHHHcCCCEEEeeCCCcchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHH
Confidence 99999999999999999999999999999999999999889999999999988899999999999999999999999999
Q ss_pred HHHHhcCCCCCCCCChHHHHHHhhcCCCCCCCCChhhhhhhhcccccccccCCCCChhhHHHHHHHHHHHhHHHHH-Hhh
Q 004537 385 AYFSSIGCSPQIAMNPAEFLLDLANGNLHDVSVPSELQDRVQTENSENDTANGKPTPAIVHEYLVEAYETRVAENE-KKK 463 (746)
Q Consensus 385 ~~f~~~G~~~~~~~npad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 463 (746)
+||+++|++||++.||+||++|+++.+..... +.. ...+.+.+.|+++....+ ...
T Consensus 256 ~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~---~~~--------------------~~~~~~~~~~~~s~~~~~~~~~ 312 (617)
T TIGR00955 256 PFFSDLGHPCPENYNPADFYVQVLAVIPGSEN---ESR--------------------ERIEKICDSFAVSDIGRDMLVN 312 (617)
T ss_pred HHHHHcCCCCCCCCChHHHHHHHhhcCccccc---chH--------------------HHHHHHHHHHhcchhhHHHHHH
Confidence 99999999999999999999999865322100 000 001111122211100000 000
Q ss_pred hcCCC-CCcHHhhhhcCCCCCCcCCcHHHHHHHHHHHHHHH-hhcchhHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHH
Q 004537 464 LMAPI-PLDEEIKAKVSSPKRNWGASWIQQYTILFRRGIKE-HRHDYFSWLRITQVLATAVILGLLWWQSDSKSPKGLED 541 (746)
Q Consensus 464 ~~~~~-~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~-~R~~~~~~~r~~~~i~~ali~G~lf~~~~~~~~~~~~~ 541 (746)
..... +.....+.........+..+|++|+.+|++|+++. +|++.+.+.|+++.+++|+++|++||+++. ++.++++
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~-~~~~~~~ 391 (617)
T TIGR00955 313 TNLWSGKAGGLVKDSENMEGIGYNASWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGL-TQKGVQN 391 (617)
T ss_pred hhhhhccccccccccccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCC-CHHHHHH
Confidence 00000 00000000000112346789999999999999986 688888899999999999999999999975 5789999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCChHH
Q 004537 542 QAGLLFFIAVFWSFFPIFTAIFTFPQERAMLSKERAADMYRLSAYFLARTTSDLPLNLVLPVLFLVIVYFMAGLRMGAGP 621 (746)
Q Consensus 542 ~~g~lff~~~~~~~~~~~~~i~~~~~eR~v~~rEr~~g~Y~~~ay~la~~l~~lP~~~~~~~if~~ivY~m~gl~~~~~~ 621 (746)
+.|++|+++++++|.+++.++..|+.||++|+||+.+|+|++++|++|++++|+|+.++.+++|++|+|||+|+++++.+
T Consensus 392 ~~g~lf~~~~~~~f~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~ 471 (617)
T TIGR00955 392 INGALFLFLTNMTFQNVFPVINVFTAELPVFLRETRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATH 471 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHH
Confidence 99999999999888887888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcccC--CCccchhhhhccCHHHHHHHHHHHHH
Q 004537 622 FFLSMLTVFLSIVAAQGLGLAIGAILMDLKKATTLASVTIMTFMLAGGYFVQ--EVPVFISWIRYMSFNFHTYKILLKIQ 699 (746)
Q Consensus 622 Ff~f~l~~~l~~~~~~slg~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~--~ip~~~~Wl~yiS~~~yafeal~~ne 699 (746)
||+|+++++++.++++++|+++++++|+...|+.+++++++++++|+||+++ +||+||+|++|+||++|+||+++.||
T Consensus 472 f~~f~l~~~l~~~~~~s~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~ip~~~~W~~~isp~~ya~~al~~ne 551 (617)
T TIGR00955 472 FLTFLFLVTLVANVATSFGYLISCAFSSTSMALTVGPPFVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQ 551 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhcccChhhccHHHHHHHHcCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999997 89999999999999999999999999
Q ss_pred cCCCCC-C-------------------CCCcccCchhhhHHHHHHHHHHHHHHHHHHHHHhhhh
Q 004537 700 YADISP-I-------------------VNGMRTDSGFREVCALVAMVFGYRLLAYLSLRKMKLH 743 (746)
Q Consensus 700 f~~~~~-~-------------------~~g~~~~~~~~~~~iL~~~~~~f~~l~~~~L~~~~~~ 743 (746)
|.+... . ..|++.++.|.++++|++++++|++++|++||+..++
T Consensus 552 f~~~~~~~c~~~~~~~~c~~~g~~~l~~~g~~~~~~~~~~~il~~~~~~~~~l~~~~L~~~~~~ 615 (617)
T TIGR00955 552 WSDVDNIECTSANTTGPCPSSGEVILETLSFRNADLYLDLIGLVILIFFFRLLAYFALRIRIRR 615 (617)
T ss_pred hCCCccccccCcCcCCCCCcChHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 976431 0 1133345668899999999999999999999886654
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-96 Score=914.06 Aligned_cols=568 Identities=27% Similarity=0.464 Sum_probs=482.0
Q ss_pred CCCCceEEEEeEEEEEeecccc-----ccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEE
Q 004537 144 PTLPIYLKFTDVTYKVILKGMT-----SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITY 218 (746)
Q Consensus 144 ~~~~~~l~~~nvs~~~~~~~~~-----~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~ 218 (746)
|..|..++|+||+|.+..+... ..+++.+|+|||++++||+++||+||||||||||||+|+|+......+|+|.+
T Consensus 862 ~~~~~~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~i 941 (1470)
T PLN03140 862 PFTPLAMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRI 941 (1470)
T ss_pred CCCcceEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEE
Confidence 3345679999999998643210 11345799999999999999999999999999999999998643346899999
Q ss_pred CCEeCCh-hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCC
Q 004537 219 NDHPYSK-SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVS 297 (746)
Q Consensus 219 ~G~~~~~-~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS 297 (746)
||.+..+ ..++.+|||+|+|.+++.+||+|||.|++.++.+...+++++.++++++++.+||.+++|+.+|+..+++||
T Consensus 942 nG~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LS 1021 (1470)
T PLN03140 942 SGFPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLS 1021 (1470)
T ss_pred CCccCChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcC
Confidence 9998753 456789999999999999999999999988877666666777788999999999999999999987778999
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeC-CeEEE
Q 004537 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK-GSLLY 376 (746)
Q Consensus 298 GGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~-G~iv~ 376 (746)
|||||||+||++|+.+|+||||||||+|||+.++..+++.|++++++|+|||+++|||+.++++.||++++|++ |+++|
T Consensus 1022 gGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~ 1101 (1470)
T PLN03140 1022 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIY 1101 (1470)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEE
Confidence 99999999999999999999999999999999999999999999988999999999998778899999999996 89999
Q ss_pred ecCH----HHHHHHHHhc-CC-CCCCCCChHHHHHHhhcCCCCCCCCChhhhhhhhcccccccccCCCCChhhHHHHHHH
Q 004537 377 FGKA----SEAMAYFSSI-GC-SPQIAMNPAEFLLDLANGNLHDVSVPSELQDRVQTENSENDTANGKPTPAIVHEYLVE 450 (746)
Q Consensus 377 ~G~~----~~~~~~f~~~-G~-~~~~~~npad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (746)
+|++ +++++||+++ |+ +||++.|||||++|+++.+... +. . .+ +.+
T Consensus 1102 ~G~~~~~~~~~~~yF~~~~g~~~~p~~~NPAd~~l~v~~~~~~~---------~~--~-------------~d----~~~ 1153 (1470)
T PLN03140 1102 SGPLGRNSHKIIEYFEAIPGVPKIKEKYNPATWMLEVSSLAAEV---------KL--G-------------ID----FAE 1153 (1470)
T ss_pred ECCcccccccHHHHHHhcCCCCCCCCCCCchhhhhhhhcccccc---------cc--c-------------ch----HHH
Confidence 9996 6899999998 56 4999999999999997642110 00 0 00 111
Q ss_pred HHHHhHHH----HHHhhhcCCCCCcHHhhhhcCCCCCCcCCcHHHHHHHHHHHHHHH-hhcchhHHHHHHHHHHHHHHHH
Q 004537 451 AYETRVAE----NEKKKLMAPIPLDEEIKAKVSSPKRNWGASWIQQYTILFRRGIKE-HRHDYFSWLRITQVLATAVILG 525 (746)
Q Consensus 451 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~-~R~~~~~~~r~~~~i~~ali~G 525 (746)
.|+++... ........+.+... ......++..+||+|+++|++|++++ +|++.+.+.|+++.+++|+++|
T Consensus 1154 ~~~~s~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~Q~~~l~~R~~~~~~R~p~~~~~r~~~~i~~al~~G 1228 (1470)
T PLN03140 1154 HYKSSSLYQRNKALVKELSTPPPGAS-----DLYFATQYSQSTWGQFKSCLWKQWWTYWRSPDYNLVRFFFTLAAALMVG 1228 (1470)
T ss_pred HHhccHHHHHHHHHHHHhccCCCCcc-----ccccCccccCCHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHH
Confidence 11111000 00001111111100 11123457889999999999999985 8999999999999999999999
Q ss_pred HHhcCCCCCC--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHH
Q 004537 526 LLWWQSDSKS--PKGLEDQAGLLFFIAVFWSFFPIFTAIFTFPQERAMLSKERAADMYRLSAYFLARTTSDLPLNLVLPV 603 (746)
Q Consensus 526 ~lf~~~~~~~--~~~~~~~~g~lff~~~~~~~~~~~~~i~~~~~eR~v~~rEr~~g~Y~~~ay~la~~l~~lP~~~~~~~ 603 (746)
++||+++++. ..+++++.|++|+++++.++..+...++.|..||++|+|||++|+|++.+|++|++++|+|+.++.++
T Consensus 1229 ~~f~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~p~~~~eR~vf~REr~~~~Y~~~~y~la~~l~eiP~~~~~~~ 1308 (1470)
T PLN03140 1229 TIFWKVGTKRSNANDLTMVIGAMYAAVLFVGINNCSTVQPMVAVERTVFYRERAAGMYSALPYAIAQVVCEIPYVLIQTT 1308 (1470)
T ss_pred HHhhCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999997532 36788899999999999888777777899999999999999999999999999999999999999999
Q ss_pred HHhhhhhhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcccC--CCccchhh
Q 004537 604 LFLVIVYFMAGLRMGAGPFFLSMLTVFLSIVAAQGLGLAIGAILMDLKKATTLASVTIMTFMLAGGYFVQ--EVPVFISW 681 (746)
Q Consensus 604 if~~ivY~m~gl~~~~~~Ff~f~l~~~l~~~~~~slg~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~--~ip~~~~W 681 (746)
+|++|+|||+||+++++.||+|+++++++.++++++|+++++++||..+|..+++++++++++|+||++| +||+||+|
T Consensus 1309 if~~i~Y~m~Gl~~~~~~f~~~~~~~~l~~~~~~~~g~~~~a~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~iP~~~~W 1388 (1470)
T PLN03140 1309 YYTLIVYAMVAFEWTAAKFFWFYFISFFSFLYFTYYGMMTVSLTPNQQVAAIFAAAFYGLFNLFSGFFIPRPKIPKWWVW 1388 (1470)
T ss_pred HHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHeeeccChHHCchHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999997 89999999
Q ss_pred hhccCHHHHHHHHHHHHHcCCCCCC------------------CCCcccCchhhhHHHHHHHHHHHHHHHHHHHHHhhhh
Q 004537 682 IRYMSFNFHTYKILLKIQYADISPI------------------VNGMRTDSGFREVCALVAMVFGYRLLAYLSLRKMKLH 743 (746)
Q Consensus 682 l~yiS~~~yafeal~~nef~~~~~~------------------~~g~~~~~~~~~~~iL~~~~~~f~~l~~~~L~~~~~~ 743 (746)
++|+||++|+|++++.|||.+.... ..|++.++.|.++++++++.++|++++++++|+.+++
T Consensus 1389 ~~~isp~~y~~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~il~~~~~~f~~~~~~~~~~~~~q 1468 (1470)
T PLN03140 1389 YYWICPVAWTVYGLIVSQYGDVEDTIKVPGGAPDPTIKWYIQDHYGYDPDFMGPVAAVLVGFTVFFAFIFAFCIRTLNFQ 1468 (1470)
T ss_pred HHHcCHHHHHHhhhHHHHhCCCCCcccCCCCCCCCcHHHHHHHhcCcCcccccchhhhHHHHHHHHHHHHHHHHHHhhcc
Confidence 9999999999999999999874321 1234445667899999999999999999999999987
Q ss_pred c
Q 004537 744 F 744 (746)
Q Consensus 744 ~ 744 (746)
.
T Consensus 1469 ~ 1469 (1470)
T PLN03140 1469 T 1469 (1470)
T ss_pred c
Confidence 4
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-95 Score=907.44 Aligned_cols=555 Identities=26% Similarity=0.422 Sum_probs=462.4
Q ss_pred cccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCC--CCCccEEEECCEeCCh---hccCcEEEEecCCcCCCC
Q 004537 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME--PTVGGSITYNDHPYSK---SLKSKIGFVTQDDVLFPH 243 (746)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~--~~~~G~I~~~G~~~~~---~~~~~i~yv~Q~~~l~~~ 243 (746)
++++|+|+|+++++||+++|+||||||||||||+|+|+... ++.+|+|.+||+++.+ ..++.++||+|+|.+++.
T Consensus 73 ~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~ 152 (1394)
T TIGR00956 73 TFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPH 152 (1394)
T ss_pred cceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCC
Confidence 46799999999999999999999999999999999997531 3468999999998742 345679999999999999
Q ss_pred CCHHHHHHHHHhccCCC----CCcHHHHHHH-HHHHHHHcCCCccccccccCccccCCCHHHHHHHHHHHHHhhCCCEEE
Q 004537 244 LTVKETLTYAALLRLPN----TLTKQQKEKR-AIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 318 (746)
Q Consensus 244 lTV~E~l~~~~~~~~~~----~~~~~~~~~~-v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~ill 318 (746)
+||+|||.|++.++.|. ..++++..++ ++++++.+||++++|+.+|+..+++|||||||||+||++|+.+|+|++
T Consensus 153 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vll 232 (1394)
T TIGR00956 153 LTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQC 232 (1394)
T ss_pred CCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEE
Confidence 99999999998877543 2344444444 467899999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHHHHHHhcCCCCCCC
Q 004537 319 LDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGCSPQIA 397 (746)
Q Consensus 319 LDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~~f~~~G~~~~~~ 397 (746)
|||||+|||+.++.++++.|++++++ |+|||+++|||+.+++++||+|++|++|+++|+|+++++.+||+++|++||++
T Consensus 233 lDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~~yF~~lG~~~p~~ 312 (1394)
T TIGR00956 233 WDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQYFEKMGFKCPDR 312 (1394)
T ss_pred EeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHHHHHHHcCCCCCCC
Confidence 99999999999999999999999874 99999999999888999999999999999999999999999999999999999
Q ss_pred CChHHHHHHhhcCCCCCCCCChhhhhhhhcccccccccCCCCChhhHHHHHHHHHHHhH------HHHHHh-hhcCCCCC
Q 004537 398 MNPAEFLLDLANGNLHDVSVPSELQDRVQTENSENDTANGKPTPAIVHEYLVEAYETRV------AENEKK-KLMAPIPL 470 (746)
Q Consensus 398 ~npad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~-~~~~~~~~ 470 (746)
.|||||++|+++.+.+... ...++..+ ... +.+.++|+++. .+.+.. +.......
T Consensus 313 ~n~aDfl~~~~~~~~~~~~--~~~e~~~~------------~~~----~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 374 (1394)
T TIGR00956 313 QTTADFLTSLTSPAERQIK--PGYEKKVP------------RTP----QEFETYWRNSPEYAQLMKEIDEYLDRCSESDT 374 (1394)
T ss_pred CChHHHHHhccChhhhhcc--ccccccCC------------CCH----HHHHHHHHcCHHHHHHHHHHHHHhhhccchhh
Confidence 9999999999865422110 00000000 011 11222222111 000000 00000000
Q ss_pred cH-------HhhhhcCCCCCCcCCcHHHHHHHHHHHHHHH-hhcchhHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHH
Q 004537 471 DE-------EIKAKVSSPKRNWGASWIQQYTILFRRGIKE-HRHDYFSWLRITQVLATAVILGLLWWQSDSKSPKGLEDQ 542 (746)
Q Consensus 471 ~~-------~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~-~R~~~~~~~r~~~~i~~ali~G~lf~~~~~~~~~~~~~~ 542 (746)
.+ ..+.+.......+..|||+|+++|++|++++ +|++.+.+.|+++.+++|+++|++||+++. ++.++++|
T Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~ii~~li~G~~F~~~~~-~~~~~~~r 453 (1394)
T TIGR00956 375 KEAYRESHVAKQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPK-NTSDFYSR 453 (1394)
T ss_pred HHHHHHHHHhhhcccccCCCCCcCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCC-CchhHHHH
Confidence 00 0001111233457889999999999999986 688888899999999999999999999975 57899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCChHHH
Q 004537 543 AGLLFFIAVFWSFFPIFTAIFTFPQERAMLSKERAADMYRLSAYFLARTTSDLPLNLVLPVLFLVIVYFMAGLRMGAGPF 622 (746)
Q Consensus 543 ~g~lff~~~~~~~~~~~~~i~~~~~eR~v~~rEr~~g~Y~~~ay~la~~l~~lP~~~~~~~if~~ivY~m~gl~~~~~~F 622 (746)
.|++||++++.+|.++ ..+..++.||+||+|||.+++|++++|++|++++|+|+.++.+++|++|+|||+||++++++|
T Consensus 454 ~g~lf~~~~~~~~~~~-~~i~~~~~eR~i~~re~~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~~~~F 532 (1394)
T TIGR00956 454 GGALFFAILFNAFSSL-LEIASMYEARPIVEKHRKYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTAGRF 532 (1394)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHhcCcceeeeccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhEEcCCCcccHHHH
Confidence 9999999999888774 667778899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcccC--CCccchhhhhccCHHHHHHHHHHHHHc
Q 004537 623 FLSMLTVFLSIVAAQGLGLAIGAILMDLKKATTLASVTIMTFMLAGGYFVQ--EVPVFISWIRYMSFNFHTYKILLKIQY 700 (746)
Q Consensus 623 f~f~l~~~l~~~~~~slg~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~--~ip~~~~Wl~yiS~~~yafeal~~nef 700 (746)
|+|+++++++.++++++++++++++||...|+.+++++++++++|+||+++ +||+||+|++|+||++||||+++.|||
T Consensus 533 f~f~l~~~l~~~~~~~~~~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~mp~~~~W~~yisp~~yafeal~~nef 612 (1394)
T TIGR00956 533 FFYLLILFICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLALSIYTGFAIPRPSMLGWSKWIYYVNPLAYAFESLMVNEF 612 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcccccChhhccHHHHHHHHcCHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999999999999999999997 799999999999999999999999999
Q ss_pred CCCCCC--------------------C------------C---------CcccCchhhhHHHHHHHHHHHHHHHHHHHHH
Q 004537 701 ADISPI--------------------V------------N---------GMRTDSGFREVCALVAMVFGYRLLAYLSLRK 739 (746)
Q Consensus 701 ~~~~~~--------------------~------------~---------g~~~~~~~~~~~iL~~~~~~f~~l~~~~L~~ 739 (746)
.+.... + . |++.++.|.|+++|++++++|++++++++.+
T Consensus 613 ~~~~~~C~~~~p~g~~y~~~~~~~~~C~~~g~~~g~~~~~G~~~L~~~~~~~~~~~w~n~gil~~~~v~f~~~~~l~l~~ 692 (1394)
T TIGR00956 613 HGRRFECSQYVPSGGGYDNLGVTNKVCTVVGAEPGQDYVDGDDYLKLSFQYYNSHKWRNFGIIIGFTVFFFFVYILLTEF 692 (1394)
T ss_pred cCCcccccccccCCCCCCCCCccCccccCCCCcCCcccccHHHHHHhcCCcccchhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 762210 0 1 1222456889999999999999999999999
Q ss_pred hhhh
Q 004537 740 MKLH 743 (746)
Q Consensus 740 ~~~~ 743 (746)
++..
T Consensus 693 ~~~~ 696 (1394)
T TIGR00956 693 NKGA 696 (1394)
T ss_pred cccc
Confidence 8743
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-93 Score=893.64 Aligned_cols=555 Identities=25% Similarity=0.394 Sum_probs=457.7
Q ss_pred ccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCC-CCccEEEECCEeCChh-ccCcEEEEecCCcCCCCCC
Q 004537 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP-TVGGSITYNDHPYSKS-LKSKIGFVTQDDVLFPHLT 245 (746)
Q Consensus 168 ~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~-~~~G~I~~~G~~~~~~-~~~~i~yv~Q~~~l~~~lT 245 (746)
.++.||+|+|+.++|||+++|+||||||||||||+|+|++... ..+|+|.+||+++.+. .++.++||+|+|.+++++|
T Consensus 176 ~~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lT 255 (1470)
T PLN03140 176 TKLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMT 255 (1470)
T ss_pred ccceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCc
Confidence 3567999999999999999999999999999999999976421 2489999999988542 3678999999999999999
Q ss_pred HHHHHHHHHhccCCC-------CCcHHHH------------------------HHHHHHHHHHcCCCccccccccCcccc
Q 004537 246 VKETLTYAALLRLPN-------TLTKQQK------------------------EKRAIDVINELGLERCQDTMIGGSFVR 294 (746)
Q Consensus 246 V~E~l~~~~~~~~~~-------~~~~~~~------------------------~~~v~~~l~~lgL~~~~~~~vg~~~~~ 294 (746)
|+|||.|+++++.+. ..+++++ +..++++++.+||++++||.+|+..++
T Consensus 256 V~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~r 335 (1470)
T PLN03140 256 VKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIR 335 (1470)
T ss_pred HHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCcccc
Confidence 999999998765321 1112211 123577899999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCChHHHhccCEEEEEeCCe
Q 004537 295 GVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGS 373 (746)
Q Consensus 295 ~LSGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~-~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~ 373 (746)
+|||||||||+||++|+.+|+++||||||+|||+.++.++++.|+++++ .|+|+|+++|||+.+++++||+|++|++|+
T Consensus 336 glSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~ 415 (1470)
T PLN03140 336 GISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQ 415 (1470)
T ss_pred CCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCce
Confidence 9999999999999999999999999999999999999999999999986 489999999999888999999999999999
Q ss_pred EEEecCHHHHHHHHHhcCCCCCCCCChHHHHHHhhcCCCCCCCCChhhhhhhhcccccccccCCCCChhhHHHHHHHHHH
Q 004537 374 LLYFGKASEAMAYFSSIGCSPQIAMNPAEFLLDLANGNLHDVSVPSELQDRVQTENSENDTANGKPTPAIVHEYLVEAYE 453 (746)
Q Consensus 374 iv~~G~~~~~~~~f~~~G~~~~~~~npad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (746)
++|+|+++++.+||+++|++||+++|||||++|+++.+... .... . ...|......+.+.++|+
T Consensus 416 ivy~G~~~~~~~yF~~lGf~cP~~~n~ADFl~~v~s~~~~~--------~~~~---~-----~~~p~~~~~~~~~~~~~~ 479 (1470)
T PLN03140 416 IVYQGPRDHILEFFESCGFKCPERKGTADFLQEVTSKKDQE--------QYWA---D-----RNKPYRYISVSEFAERFK 479 (1470)
T ss_pred EEEeCCHHHHHHHHHHcCCCCCCCCChHHHHHHhcCchhhh--------hhhh---c-----cCCccccCCHHHHHHHHH
Confidence 99999999999999999999999999999999998742110 0000 0 000000001122444454
Q ss_pred HhHHHH-HHhhhcCCCCCcHHhhhhcCCCCCCcCCcHHHHHHHHHHHHHHH-hhcchhHHHHHHHHHHHHHHHHHHhcCC
Q 004537 454 TRVAEN-EKKKLMAPIPLDEEIKAKVSSPKRNWGASWIQQYTILFRRGIKE-HRHDYFSWLRITQVLATAVILGLLWWQS 531 (746)
Q Consensus 454 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~-~R~~~~~~~r~~~~i~~ali~G~lf~~~ 531 (746)
++.... ...+... +.+...........+.|..++|.|++.|++|+++. +||+.+++.|+++.+++|+++|++||++
T Consensus 480 ~s~~~~~~~~~~~~--~~~~~~~~~~~~~~~~y~~s~~~q~~~~~~R~~~~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~ 557 (1470)
T PLN03140 480 SFHVGMQLENELSV--PFDKSQSHKAALVFSKYSVPKMELLKACWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRT 557 (1470)
T ss_pred hcHHHHHHHHHHhh--hhhhhhcccccccCCCCcCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 332111 0011111 11111011111223457889999999999999986 6888888999999999999999999998
Q ss_pred CCC--ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 004537 532 DSK--SPKGLEDQAGLLFFIAVFWSFFPIFTAIFTFPQERAMLSKERAADMYRLSAYFLARTTSDLPLNLVLPVLFLVIV 609 (746)
Q Consensus 532 ~~~--~~~~~~~~~g~lff~~~~~~~~~~~~~i~~~~~eR~v~~rEr~~g~Y~~~ay~la~~l~~lP~~~~~~~if~~iv 609 (746)
+.+ +..+.+.+.|++||++++.+|.+ +..+..++.||+||+|||+.++|++++|++|++++|+|+.++.+++|++|+
T Consensus 558 ~~~~~~~~~~~~~~g~lff~~l~~~~~~-~~~l~~~~~~r~vf~ker~~~~Y~~~ay~la~~l~~iP~~~i~~~if~~I~ 636 (1470)
T PLN03140 558 EMHTRNEEDGALYIGALLFSMIINMFNG-FAELALMIQRLPVFYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVIT 636 (1470)
T ss_pred CCCCCcchhHHHHHHHHHHHHHHHHHHH-HHHHHHHHhccchhHHhhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 642 12345678899999988877655 578899999999999999999999999999999999999999999999999
Q ss_pred hhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcccC--CCccchhhhhccCH
Q 004537 610 YFMAGLRMGAGPFFLSMLTVFLSIVAAQGLGLAIGAILMDLKKATTLASVTIMTFMLAGGYFVQ--EVPVFISWIRYMSF 687 (746)
Q Consensus 610 Y~m~gl~~~~~~Ff~f~l~~~l~~~~~~slg~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~--~ip~~~~Wl~yiS~ 687 (746)
|||+||++++++||.|+++++++.++++++++++++++|++.+|+.+++++++++++|+||+++ +||+||+|++|+||
T Consensus 637 Y~m~Gl~~~~~~Ff~f~l~~~l~~~~~~~l~~~i~a~~~~~~~A~~~~~~~~l~~~lf~Gf~i~~~~ip~w~~W~~yisp 716 (1470)
T PLN03140 637 YYSIGFAPEASRFFKQLLLVFLIQQMAAGIFRLIASVCRTMIIANTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSP 716 (1470)
T ss_pred hhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHccceechHhCchHHHHHHHhCH
Confidence 9999999999999999999999999999999999999999999999999999999999999997 89999999999999
Q ss_pred HHHHHHHHHHHHcCCCCC---------CCC--------CcccC--chhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 004537 688 NFHTYKILLKIQYADISP---------IVN--------GMRTD--SGFREVCALVAMVFGYRLLAYLSLRKMK 741 (746)
Q Consensus 688 ~~yafeal~~nef~~~~~---------~~~--------g~~~~--~~~~~~~iL~~~~~~f~~l~~~~L~~~~ 741 (746)
++|||||++.|||.+... ... |+..+ +.|.++++|++++++|++++|++|++++
T Consensus 717 ~~Ya~eal~~NEf~~~~~~~~~~~~~~~~~G~~~L~~~g~~~~~~~~w~~~~iL~~~~v~f~~l~~l~L~~~~ 789 (1470)
T PLN03140 717 LSYGFNALAVNEMFAPRWMNKMASDNSTRLGTAVLNIFDVFTDKNWYWIGVGALLGFTILFNVLFTLALTYLN 789 (1470)
T ss_pred HHHHHHHHHHHhccCccccCcccCCCCcccHHHHHHhcCcCccccchhhhHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999965421 111 23222 3478999999999999999999999876
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-92 Score=879.71 Aligned_cols=560 Identities=29% Similarity=0.472 Sum_probs=466.0
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCC-CCccEEEECCEeCChhc
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP-TVGGSITYNDHPYSKSL 227 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~-~~~G~I~~~G~~~~~~~ 227 (746)
.++++||+|+|..+ ++++.+|+|||++++|||++||+||||||||||||+|+|+.... +.+|+|.+||+++...+
T Consensus 759 ~l~~~nl~~~~~~~----~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~ 834 (1394)
T TIGR00956 759 IFHWRNLTYEVKIK----KEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSF 834 (1394)
T ss_pred eEEEEeeEEEecCC----CCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhh
Confidence 58999999998421 23568999999999999999999999999999999999976421 35799999999987667
Q ss_pred cCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHH
Q 004537 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (746)
Q Consensus 228 ~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA 307 (746)
++.+|||+|+|.+++.+||+|||.|++.++.|...+++++.++++++++.+||.+++|+.+|+.. .+|||||||||+||
T Consensus 835 ~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~-~~LSgGqrqRl~Ia 913 (1394)
T TIGR00956 835 QRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPG-EGLNVEQRKRLTIG 913 (1394)
T ss_pred hcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCC-CCCCHHHhhHHHHH
Confidence 88899999999999999999999999988876666677778889999999999999999998543 38999999999999
Q ss_pred HHHhhCCC-EEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCC-eEEEecCH----H
Q 004537 308 NEIIINPS-LLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKG-SLLYFGKA----S 381 (746)
Q Consensus 308 ~aL~~~p~-illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G-~iv~~G~~----~ 381 (746)
++|+.+|+ ||||||||+|||+.++..+++.|++++++|+|||+++|||+..+++.||++++|++| +++|+|++ +
T Consensus 914 ~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~~~~~ 993 (1394)
T TIGR00956 914 VELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGENSH 993 (1394)
T ss_pred HHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCcccccc
Confidence 99999997 999999999999999999999999998889999999999997778899999999997 99999997 6
Q ss_pred HHHHHHHhcCC-CCCCCCChHHHHHHhhcCCCCCCCCChhhhhhhhcccccccccCCCCChhhHHHHHHHHHHHhHHHHH
Q 004537 382 EAMAYFSSIGC-SPQIAMNPAEFLLDLANGNLHDVSVPSELQDRVQTENSENDTANGKPTPAIVHEYLVEAYETRVAENE 460 (746)
Q Consensus 382 ~~~~~f~~~G~-~~~~~~npad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (746)
++++||+++|+ +||++.|||||++|+++....... ..+. .+.+..++..+.. .+...
T Consensus 994 ~~~~yf~~~G~~~~p~~~NpAd~~ldvi~~~~~~~~----~~~~-------~~~~~~s~~~~~~--------~~~~~--- 1051 (1394)
T TIGR00956 994 TIINYFEKHGAPKCPEDANPAEWMLEVIGAAPGAHA----NQDY-------HEVWRNSSEYQAV--------KNELD--- 1051 (1394)
T ss_pred hHHHHHHhcCCCCCCCCCCHHHHHHHHhhcccccch----hccH-------HHHHhcCHHHHHH--------HHHHH---
Confidence 78999999996 999999999999999864321100 0000 0001111000000 00000
Q ss_pred HhhhcCCCCCcHHhhhhcCCCCCCcCCcHHHHHHHHHHHHHHH-hhcchhHHHHHHHHHHHHHHHHHHhcCCCCCChhhH
Q 004537 461 KKKLMAPIPLDEEIKAKVSSPKRNWGASWIQQYTILFRRGIKE-HRHDYFSWLRITQVLATAVILGLLWWQSDSKSPKGL 539 (746)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~-~R~~~~~~~r~~~~i~~ali~G~lf~~~~~~~~~~~ 539 (746)
....+...... .........+.++||+|+++|++|++++ +|++.+.+.|+++.+++|+++|++||++++ ++.++
T Consensus 1052 --~~~~~~~~~~~--~~~~~~~~~~~~s~~~q~~~l~~R~~~~~~R~~~~~~~r~~~~i~~~l~~G~~f~~~~~-~~~~i 1126 (1394)
T TIGR00956 1052 --RLEAELSKAED--DNDPDALSKYAASLWYQFKLVLWRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFKVGT-SLQGL 1126 (1394)
T ss_pred --HhhcccccCcc--ccccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhCCCC-CHHHH
Confidence 00000000000 0000122357789999999999999986 799999999999999999999999999975 57899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHH-HHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCC
Q 004537 540 EDQAGLLFFIAVFWSFFPIFTAIFTFPQERAML-SKERAADMYRLSAYFLARTTSDLPLNLVLPVLFLVIVYFMAGLRMG 618 (746)
Q Consensus 540 ~~~~g~lff~~~~~~~~~~~~~i~~~~~eR~v~-~rEr~~g~Y~~~ay~la~~l~~lP~~~~~~~if~~ivY~m~gl~~~ 618 (746)
++|.|++|+++++.++. ....++.|+.||.+| +|||.+|+|++++|++|++++|+|+.++.+++|++|+|||+||+++
T Consensus 1127 ~~~~g~~f~~~~~~~~~-~~~~~~~f~~~r~~~~~RE~~s~~Y~~~~y~~a~~l~elP~~~~~~~if~~i~Y~~~Gl~~~ 1205 (1394)
T TIGR00956 1127 QNQMFAVFMATVLFNPL-IQQYLPPFVAQRDLYEVRERPSRTFSWLAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYWN 1205 (1394)
T ss_pred HHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeecccccCc
Confidence 99999999988876654 346778888988885 9999999999999999999999999999999999999999999988
Q ss_pred hHH-------HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcccC--CCccchhhhhccCHHH
Q 004537 619 AGP-------FFLSMLTVFLSIVAAQGLGLAIGAILMDLKKATTLASVTIMTFMLAGGYFVQ--EVPVFISWIRYMSFNF 689 (746)
Q Consensus 619 ~~~-------Ff~f~l~~~l~~~~~~slg~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~--~ip~~~~Wl~yiS~~~ 689 (746)
+.. |++|+++++++.++++++|+++++++|+..+|+.+++++++++++|+||+++ +||.||+|++|+||++
T Consensus 1206 ~~~~~~~~~~f~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~a~~~~~~~~~~~~lf~G~~~~~~~ip~~~~w~~~~sp~~ 1285 (1394)
T TIGR00956 1206 ASKTGQVHERGVLFWLLSTMFFLYFSTLGQMVISFNPNADNAAVLASLLFTMCLSFCGVLAPPSRMPGFWIFMYRCSPFT 1285 (1394)
T ss_pred ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhccccCChhHCcHHHhHHHhcCHHH
Confidence 766 9999999999999999999999999999999999999999999999999997 8999999999999999
Q ss_pred HHHHHHHHHHcCCCCCC----------------------------------------C------C--------CcccCch
Q 004537 690 HTYKILLKIQYADISPI----------------------------------------V------N--------GMRTDSG 715 (746)
Q Consensus 690 yafeal~~nef~~~~~~----------------------------------------~------~--------g~~~~~~ 715 (746)
|+|++++.|||.+.... + + |+..++.
T Consensus 1286 y~~~~l~~~~~~~~~~~C~~~e~~~f~pp~~~tC~~y~~~~~~~~~G~l~~~~a~~~C~yC~~~~~~~~l~~~~~~~~~~ 1365 (1394)
T TIGR00956 1286 YLVQALLSTGLADVPVTCKVKELLTFNPPSGQTCGEYMKPYLENAGGYLLNPNATDSCSFCQYSYTNDFLEPISSKYSGR 1365 (1394)
T ss_pred HHHHHHHHHHcCCCeeecCccccceecCCCCCCHHHHHHHHHhhCCcEeeCCCCCCCCCcCCCCCHHHHHHHcCCccccc
Confidence 99999999999763200 0 0 2223456
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 004537 716 FREVCALVAMVFGYRLLAYLSLRKMKL 742 (746)
Q Consensus 716 ~~~~~iL~~~~~~f~~l~~~~L~~~~~ 742 (746)
|.|+++++++++++ ++++++|++..+
T Consensus 1366 w~~~~i~~~~~~~~-~~~~~~l~~~~r 1391 (1394)
T TIGR00956 1366 WRNFGIFIAFIFFN-IIATVFFYWLAR 1391 (1394)
T ss_pred ccchhhhhHHHHHH-HHHHHhhheEEE
Confidence 88999999999999 888888877543
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-92 Score=832.02 Aligned_cols=546 Identities=30% Similarity=0.500 Sum_probs=467.9
Q ss_pred ccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCC-hhccCcEEEEecCCcCCCCCCH
Q 004537 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS-KSLKSKIGFVTQDDVLFPHLTV 246 (746)
Q Consensus 168 ~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~-~~~~~~i~yv~Q~~~l~~~lTV 246 (746)
+.+++|+||++.++||.++||||+||||||||||+|+||...+..+|+|++||.|.+ +.++|.+|||.|+|.|.+.+||
T Consensus 802 ~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TV 881 (1391)
T KOG0065|consen 802 GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELTV 881 (1391)
T ss_pred cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhccccceeecccccCcccch
Confidence 667899999999999999999999999999999999999877778999999999998 6788999999999999999999
Q ss_pred HHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHHHHHhhCC-CEEEEeCCCCC
Q 004537 247 KETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINP-SLLFLDEPTSG 325 (746)
Q Consensus 247 ~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p-~illLDEPTsg 325 (746)
||.|.|+|.+|.|.+++.+++.+.|+++++.++|++++|.+||..+ .|||.+||||++||.+|+.|| .||||||||||
T Consensus 882 rESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G-~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSG 960 (1391)
T KOG0065|consen 882 RESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPG-SGLSTEQRKRLTIGVELVANPSSILFLDEPTSG 960 (1391)
T ss_pred HHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCC-CCCCHHHhceeeEEEEEecCCceeEEecCCCCC
Confidence 9999999999999999999999999999999999999999999887 999999999999999999999 89999999999
Q ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeC-CeEEEecCH----HHHHHHHHhcC-CCCCCCCC
Q 004537 326 LDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK-GSLLYFGKA----SEAMAYFSSIG-CSPQIAMN 399 (746)
Q Consensus 326 LD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~-G~iv~~G~~----~~~~~~f~~~G-~~~~~~~n 399 (746)
||+.++..|++.+|++++.|+||+||+|||+.++++.||++++|++ |++||.|+. +.+++||+++| .+||...|
T Consensus 961 LDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~~s~~li~YFes~~~~~~~~~~N 1040 (1391)
T KOG0065|consen 961 LDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGENSSKLIEYFESIGGVKCISDEN 1040 (1391)
T ss_pred ccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCcccccHHHHHHHHhcCCccCCCCCC
Confidence 9999999999999999999999999999999999999999999996 799999986 45788999997 78998889
Q ss_pred hHHHHHHhhcCCCCCCCCChhhhhhhhcccccccccCCCCChhhHHHHHHHHHHHhHHHHHHhhhcCCCCCcHHhhhhcC
Q 004537 400 PAEFLLDLANGNLHDVSVPSELQDRVQTENSENDTANGKPTPAIVHEYLVEAYETRVAENEKKKLMAPIPLDEEIKAKVS 479 (746)
Q Consensus 400 pad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (746)
||||++|++...... + ...+.++.|..++. |++..+ +-+++..+.+. +....
T Consensus 1041 PA~~mLevi~~~~~~-----~------~~~D~a~~w~~S~e-----------~k~~~e--~v~~l~~~~~~----~~~~~ 1092 (1391)
T KOG0065|consen 1041 PAEWMLEVIGAGAEA-----S------LSVDFAEIWKNSEE-----------YKRNKE--LVKELSQPPPG----FSTDL 1092 (1391)
T ss_pred hHHHHHhhccccccc-----c------cCccHHHHHhccHH-----------HHHHHH--HHHHHhcCCcc----CCccc
Confidence 999999998642111 0 00011111111111 111101 11122222221 11122
Q ss_pred CCCCCcCCcHHHHHHHHHHHHHH-HhhcchhHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Q 004537 480 SPKRNWGASWIQQYTILFRRGIK-EHRHDYFSWLRITQVLATAVILGLLWWQSDSKSPKGLEDQAGLLFFIAVFWSFFPI 558 (746)
Q Consensus 480 ~~~~~~~~s~~~Q~~~L~~R~~~-~~R~~~~~~~r~~~~i~~ali~G~lf~~~~~~~~~~~~~~~g~lff~~~~~~~~~~ 558 (746)
..++++..|+|.|++.+++|++. .||+|.+.++|++..++.||++|+.||+.+. +..++||.+|++|..+++.+-...
T Consensus 1093 ~~~~~fa~s~~~Q~k~~l~Rq~~syWRsp~y~~ar~~~~i~~gl~iGf~F~~~g~-~~q~lqn~m~a~yma~v~~~~~~~ 1171 (1391)
T KOG0065|consen 1093 EFKTRFAQSLWYQFKLCLWRQFLSYWRSPDYLMARFALTIVAGLFIGFTFWKVGH-NVQGLQNAMGAAYMATVFSGPNNN 1171 (1391)
T ss_pred ccccccchhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhheeeeeecCC-cHHHHHHHHHHHHHHHHHhhhhhh
Confidence 34456889999999999999987 5899999999999999999999999999984 688999999999998887554333
Q ss_pred HHHHHHhHHhhHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCChHHHHHHHHHHHHHHHHHHH
Q 004537 559 FTAIFTFPQERAMLSKERAADMYRLSAYFLARTTSDLPLNLVLPVLFLVIVYFMAGLRMGAGPFFLSMLTVFLSIVAAQG 638 (746)
Q Consensus 559 ~~~i~~~~~eR~v~~rEr~~g~Y~~~ay~la~~l~~lP~~~~~~~if~~ivY~m~gl~~~~~~Ff~f~l~~~l~~~~~~s 638 (746)
......+..||.+++||+++|+|++.+|++|++++|+|+.++++++|.+|.|+++|+..++.+|++|++.++++.++.++
T Consensus 1172 ~~~~~~v~~e~~y~~RE~~s~mYs~~~~~~aq~~vEiP~~l~~stl~~~~~Y~~iGF~~~a~~~~~f~~~~~~f~lYf~~ 1251 (1391)
T KOG0065|consen 1172 QLQQPAVATERLYEYRERASNMYSWTPFALAQVLVEIPYNLLQSTLFFLITYYPIGFYWTASKFFWFLLFMFIFFLYFTT 1251 (1391)
T ss_pred hhhhhHHhhhhhheeeecccCcccHHHHHHHHHHHHHHHHHHHHHHhheeeeeeccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 23456677899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcccC--CCccchhhhhccCHHHHHHHHHHHHHcCCCCCC----------
Q 004537 639 LGLAIGAILMDLKKATTLASVTIMTFMLAGGYFVQ--EVPVFISWIRYMSFNFHTYKILLKIQYADISPI---------- 706 (746)
Q Consensus 639 lg~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~--~ip~~~~Wl~yiS~~~yafeal~~nef~~~~~~---------- 706 (746)
+|+++.+++||.++|..+.+++..++.+|+||++| .||.||+|++|+||+.|..++++..++.|.+..
T Consensus 1252 ~Gmm~~s~tPn~~~Aav~~s~~~s~~~~F~G~l~p~~~iP~fW~wmy~lsP~ty~l~gli~~~~~d~~v~c~~~e~~~~~ 1331 (1391)
T KOG0065|consen 1252 LGMMLVSLTPNLQTAAVIASLFFSFWNLFSGFLQPRSLIPKFWIWMYYLSPVTYTLEGLISSQLGDVEVTCEDSEMNYFD 1331 (1391)
T ss_pred HHHHHHHhCCChhHHHHHHHHHHHHHHHhcccccccccccceeeeeeecCcHHHHHHHHHHHHhCCCceeeecCCccccC
Confidence 99999999999999999999999999999999997 799999999999999999999999999874321
Q ss_pred -CCCc----------------ccCchhhhHHHHHHHHHHHHHHHHHHHHHhhhh
Q 004537 707 -VNGM----------------RTDSGFREVCALVAMVFGYRLLAYLSLRKMKLH 743 (746)
Q Consensus 707 -~~g~----------------~~~~~~~~~~iL~~~~~~f~~l~~~~L~~~~~~ 743 (746)
+.|. ..+......++.+++.+++.+++.+.+|+.++.
T Consensus 1332 pp~g~tcge~m~~~~~~~~Gy~~n~~a~~~c~~c~y~v~~~~l~~f~~~y~~~w 1385 (1391)
T KOG0065|consen 1332 PPSGQTCGEFMEDFFGEGTGYLHNPLATTACVYCAYTVADAFLAAFNIKYLNFW 1385 (1391)
T ss_pred CCCCcCHHHHHHHHhccCcceeccCcceeEEEEeeeehHHHHHHHHHHHHHHHH
Confidence 1121 111112234677889999999999999988764
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-85 Score=770.14 Aligned_cols=554 Identities=29% Similarity=0.500 Sum_probs=463.8
Q ss_pred cccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCC-CCccEEEECCEeCChhc-cCcEEEEecCCcCCCCCCH
Q 004537 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP-TVGGSITYNDHPYSKSL-KSKIGFVTQDDVLFPHLTV 246 (746)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~-~~~G~I~~~G~~~~~~~-~~~i~yv~Q~~~l~~~lTV 246 (746)
...+|+|+|+-++||+++.++||+||||||||++|+|.+..- ...|+|.+||.+.++.. ++.++|+.|+|.|+|.|||
T Consensus 127 ~~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTV 206 (1391)
T KOG0065|consen 127 KIQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTV 206 (1391)
T ss_pred cceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEE
Confidence 457999999999999999999999999999999999976542 23689999999986533 5779999999999999999
Q ss_pred HHHHHHHHhccCCCC----CcHHHHHH-HHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q 004537 247 KETLTYAALLRLPNT----LTKQQKEK-RAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDE 321 (746)
Q Consensus 247 ~E~l~~~~~~~~~~~----~~~~~~~~-~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~illLDE 321 (746)
+|+|.|+++++.+.. .++.++.+ ..+.+++.+||++|+||++|+...||+||||||||+||.+++.+|+++++||
T Consensus 207 reTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De 286 (1391)
T KOG0065|consen 207 RETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDE 286 (1391)
T ss_pred eehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeec
Confidence 999999999988732 23333332 5678899999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHHHHHHhcCCCCCCCCCh
Q 004537 322 PTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGCSPQIAMNP 400 (746)
Q Consensus 322 PTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~~f~~~G~~~~~~~np 400 (746)
+|+|||+.++.++++.|+++++. +.|++++.|||+++++++||+|++|.+|+++|+||.+++++||+++|+.||+++++
T Consensus 287 ~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~yFe~~Gf~cP~r~~~ 366 (1391)
T KOG0065|consen 287 ITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLPYFEDMGFKCPPRKGT 366 (1391)
T ss_pred ccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHHHHHhcCccCCCccCH
Confidence 99999999999999999999875 88999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCCCCCChhhhhhhhcccccccccCCCCChhhHHHHHHHHHHHhHHHH-HHhhhcCCCCCcHHhhhhcC
Q 004537 401 AEFLLDLANGNLHDVSVPSELQDRVQTENSENDTANGKPTPAIVHEYLVEAYETRVAEN-EKKKLMAPIPLDEEIKAKVS 479 (746)
Q Consensus 401 ad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 479 (746)
|||+.++++....... ..... .........+..+ .+.+..... ...+... +.+...+.+..
T Consensus 367 ADfLt~vts~k~~~~~-----------~~~~~-~~~~~~~~~ef~~----~~~~s~~~~~l~~~l~~--~~~~~k~~~~a 428 (1391)
T KOG0065|consen 367 ADFLTEVTSKKDQEQY-----------WNKRS-KPYPYTSVSEFAE----YFLNSEDYAKLKKELSK--PYDKSKKHKAA 428 (1391)
T ss_pred HHHHHHhhcCcccccc-----------ccccC-CCcccCCHHHHHH----HHhcchhhHHHHHHhcc--hhhhhhccchh
Confidence 9999999873211000 00000 0000001122222 222111110 1111111 11111122233
Q ss_pred CCCCCcCCcHHHHHHHHHHHHHHH-hhcchhHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Q 004537 480 SPKRNWGASWIQQYTILFRRGIKE-HRHDYFSWLRITQVLATAVILGLLWWQSDSKSPKGLEDQAGLLFFIAVFWSFFPI 558 (746)
Q Consensus 480 ~~~~~~~~s~~~Q~~~L~~R~~~~-~R~~~~~~~r~~~~i~~ali~G~lf~~~~~~~~~~~~~~~g~lff~~~~~~~~~~ 558 (746)
.....|..+.|.|++.|++|.++. .||..++..++++.+++|+|+|++|++.+-.+..+.+.|.|++||.+++.+|.+
T Consensus 429 l~s~~y~v~~~~qvk~c~~R~f~l~k~n~~~~~~~~~~~~i~ali~gslF~~~~~~t~~~~~~~~~~lffsll~~~f~~- 507 (1391)
T KOG0065|consen 429 LVSSKYSVPYWEQVKACTIREFLLMKRNYFYYVFKTVQLVIQALITGSLFYRTPMSTTSGGYSRGGALFFALLFNLFNG- 507 (1391)
T ss_pred hcCCceeccHHHHHHHHHHHHHHHHhCCceEEEhHHHHHHHHHHHHhhheeeccCcccccchhhhhHHHHHHHHHHHHh-
Confidence 455678899999999999999986 456566778999999999999999999873455778999999999999987776
Q ss_pred HHHHHHhHHhhHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCChHHHHHHHHHHHHHHHHHHH
Q 004537 559 FTAIFTFPQERAMLSKERAADMYRLSAYFLARTTSDLPLNLVLPVLFLVIVYFMAGLRMGAGPFFLSMLTVFLSIVAAQG 638 (746)
Q Consensus 559 ~~~i~~~~~eR~v~~rEr~~g~Y~~~ay~la~~l~~lP~~~~~~~if~~ivY~m~gl~~~~~~Ff~f~l~~~l~~~~~~s 638 (746)
+..+....+.||||+|||...+|+|+||.++.+++++|+.++..++|.+|+||++||.+++++||.++++++++++|+.+
T Consensus 508 laEi~~~~~~~pv~~Khr~~~fY~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~ 587 (1391)
T KOG0065|consen 508 LAEIALTFQRLPVFYKHRDLSFYPPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSG 587 (1391)
T ss_pred HHHHHHHHhhcchHHHhhcccccChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHH
Confidence 67888889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcccC--CCccchhhhhccCHHHHHHHHHHHHHcCCCCCC----------
Q 004537 639 LGLAIGAILMDLKKATTLASVTIMTFMLAGGYFVQ--EVPVFISWIRYMSFNFHTYKILLKIQYADISPI---------- 706 (746)
Q Consensus 639 lg~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~--~ip~~~~Wl~yiS~~~yafeal~~nef~~~~~~---------- 706 (746)
+++++++++++...|++++++.++.+.+++||+|| +||+||+|++|+||+.||||+++.|||.+....
T Consensus 588 lFr~ia~l~~t~~~An~~g~~~~L~i~m~~Gf~Ip~~~m~~W~~Wi~yinPl~Y~fesl~~NEF~~~~~~c~p~gp~y~n 667 (1391)
T KOG0065|consen 588 LFRFIASLSRTLSIANLIGGILLLVLFMYGGFVIPKKDMPPWFRWIAYINPLMYAFESLMSNEFHGRRWPCSPSGPAYDN 667 (1391)
T ss_pred HHHHHHHhcchHHHHhhHhHHHHHHHHHHcceeeeccccchHHHHHHHHCHHHHHHHHHHHhhhhcccCCCCCCCCcccc
Confidence 99999999999999999999999999999999998 799999999999999999999999999763110
Q ss_pred -------------CCC--------c-------ccCchhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 004537 707 -------------VNG--------M-------RTDSGFREVCALVAMVFGYRLLAYLSLRKMK 741 (746)
Q Consensus 707 -------------~~g--------~-------~~~~~~~~~~iL~~~~~~f~~l~~~~L~~~~ 741 (746)
..| + +..+.|++++|++|+.++|.++..+++-|.+
T Consensus 668 ~~~~~~~c~~~~~~~G~~~v~g~~~l~~~~~y~~~~~Wr~~gillgf~v~f~~~~~ia~~yl~ 730 (1391)
T KOG0065|consen 668 ISIENKVCAATGATLGNDYVSGRDYLKVQYQYEYKWYWRNFGILLGFTVFFNFVFLIALEYLK 730 (1391)
T ss_pred cccccccchhhccccCceEEecccccccccccccceeEeehhHHHHHHHHHHHHHHHHHHhcC
Confidence 011 1 1245678999999999999999999998876
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-61 Score=545.91 Aligned_cols=357 Identities=25% Similarity=0.375 Sum_probs=296.1
Q ss_pred hHhHHHHHHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeeccccccc-eecchhc
Q 004537 8 TSLARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLK-LELDEVS 86 (746)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 86 (746)
-++.++.||+.|.++.+|+|.+++.+|||+|+++..|.++|.++++...+.+.|++.+++.+ +.++.+..+ ..+.-++
T Consensus 313 rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~~k~a~a~~~f-~~~~~~~~~~~~~siL~ 391 (716)
T KOG0058|consen 313 RKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSKKEAVAYGIF-FGSTNLLGNLAVLSILF 391 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHh-HhHHHHHHhHHHHHHHH
Confidence 36889999999999999999999999999999999999999999999999999999999999 555555555 4555578
Q ss_pred hhhhhhhhcccccchhhhhcccccChhhhccC----------------CCCCCCCCcccccccCCCCCCCCCCC-CCCce
Q 004537 87 SGAALSRASSASLGLSFSFTGFTMPPDEIADS----------------KPFSDDDIPEDIEAGTRERPKFQTEP-TLPIY 149 (746)
Q Consensus 87 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 149 (746)
+|+.++..|+++.|.+.+|..|++...+.... +.|+..|-.+.++.. ....| .....
T Consensus 392 ~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr~P~i~~~------G~~~p~~~~G~ 465 (716)
T KOG0058|consen 392 YGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMDRKPRIPLT------GTLAPDHLQGV 465 (716)
T ss_pred hccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccCCCCCCC------Cccccccccce
Confidence 99999999999999999999999876543221 222222222111111 10111 23457
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh----
Q 004537 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (746)
|+|+||+|+|+. +++.+||||+||+|+|||++|||||||+||||+.++|. |+++|. +|+|++||+|+++
T Consensus 466 IeF~~VsFaYP~-----Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~-rfY~Pt-sG~IllDG~~i~~~~~~ 538 (716)
T KOG0058|consen 466 IEFEDVSFAYPT-----RPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLL-RFYDPT-SGRILLDGVPISDINHK 538 (716)
T ss_pred EEEEEeeeecCC-----CCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHH-HhcCCC-CCeEEECCeehhhcCHH
Confidence 999999999953 35778999999999999999999999999999999999 688765 8999999999863
Q ss_pred hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHH
Q 004537 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (746)
Q Consensus 226 ~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~ 305 (746)
.+|++||+|.|||.||.. ||+|||.|+......+++..+.+.+.+++.+..+ ++.+||.+|++. ..||||||||++
T Consensus 539 ~lr~~Ig~V~QEPvLFs~-sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~--p~gY~T~VGEkG-~qLSGGQKQRIA 614 (716)
T KOG0058|consen 539 YLRRKIGLVGQEPVLFSG-SIRENIAYGLDNATDEEIEAAAKMANAHEFITNF--PDGYNTVVGEKG-SQLSGGQKQRIA 614 (716)
T ss_pred HHHHHeeeeeccceeecc-cHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhC--ccccccccCCcc-ccccchHHHHHH
Confidence 578999999999999975 9999999996521111222334445566777755 899999999764 469999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHHH
Q 004537 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (746)
Q Consensus 306 IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 385 (746)
|||||++||.||||||.||+||++++..+.+.|.++.+ ++|||+|.|++++ .+.+|+|+++++|++++.|+|+|+++
T Consensus 615 IARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~-~rTVlvIAHRLST--V~~Ad~Ivvi~~G~V~E~G~h~eLl~ 691 (716)
T KOG0058|consen 615 IARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQ-GRTVLVIAHRLST--VRHADQIVVIDKGRVVEMGTHDELLS 691 (716)
T ss_pred HHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc-CCeEEEEehhhhH--hhhccEEEEEcCCeEEecccHHHHhh
Confidence 99999999999999999999999999999999999876 7999999999875 68899999999999999999999985
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-53 Score=421.57 Aligned_cols=218 Identities=33% Similarity=0.587 Sum_probs=198.5
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCC----
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---- 224 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~---- 224 (746)
.|+++||+++| ++..+|+|||++|++||+++|+||||||||||||||.| +. .+++|+|.++|.++.
T Consensus 2 mi~i~~l~K~f--------g~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~-LE-~~~~G~I~i~g~~~~~~~~ 71 (240)
T COG1126 2 MIEIKNLSKSF--------GDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNG-LE-EPDSGSITVDGEDVGDKKD 71 (240)
T ss_pred eEEEEeeeEEe--------CCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHC-Cc-CCCCceEEECCEeccchhh
Confidence 58999999999 57789999999999999999999999999999999997 33 456999999998764
Q ss_pred -hhccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHH
Q 004537 225 -KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (746)
Q Consensus 225 -~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqR 303 (746)
..+|+++|+|||+..|||++||.||+.++...- ...++++.++++.++|+++||.+.+|. ++.+||||||||
T Consensus 72 ~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v--~~~~k~eA~~~A~~lL~~VGL~~ka~~-----yP~qLSGGQqQR 144 (240)
T COG1126 72 ILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKV--KKLSKAEAREKALELLEKVGLADKADA-----YPAQLSGGQQQR 144 (240)
T ss_pred HHHHHHhcCeecccccccccchHHHHHHhhhHHH--cCCCHHHHHHHHHHHHHHcCchhhhhh-----CccccCcHHHHH
Confidence 246899999999999999999999999986432 246788889999999999999998885 578999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHH
Q 004537 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (746)
Q Consensus 304 v~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 383 (746)
|+|||||+.+|+++++|||||+|||+...++++.+++|+++|.|.|++||++.. ..+.+|||++|++|++++.|+++++
T Consensus 145 VAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~F-Ar~VadrviFmd~G~iie~g~p~~~ 223 (240)
T COG1126 145 VAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGF-AREVADRVIFMDQGKIIEEGPPEEF 223 (240)
T ss_pred HHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHH-HHHhhheEEEeeCCEEEEecCHHHH
Confidence 999999999999999999999999999999999999999999999999999764 6788999999999999999999886
Q ss_pred H
Q 004537 384 M 384 (746)
Q Consensus 384 ~ 384 (746)
.
T Consensus 224 f 224 (240)
T COG1126 224 F 224 (240)
T ss_pred h
Confidence 4
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-52 Score=495.78 Aligned_cols=364 Identities=24% Similarity=0.329 Sum_probs=274.8
Q ss_pred hHhHHHHHHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeeccccccceecchhch
Q 004537 8 TSLARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSS 87 (746)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (746)
++++++.++.-+++-++|||++++.+||.+|+|+..+.+||++-+......+.+++...|...-....+-...-...+|+
T Consensus 196 ~~~t~ke~~~ya~Ag~iaEe~i~~iRTV~af~gq~~e~~ry~~~L~~~~k~gi~~g~~~G~~~G~~~~~~~~~~a~~~Wy 275 (1228)
T KOG0055|consen 196 SKLTEKEQEAYAKAGSIAEEVISSIRTVYAFNGEKKEIERYSKALENALKFGIKKGLFKGLGLGFTFFLLFASYALAFWY 275 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 57888899999999999999999999999999999999999999988888877766665554211222223344556788
Q ss_pred hhhhhhhcccccchhhhhcccc----------cChhhhccCCCCCCCCCcccccccCCCCCCCC---CCCCCCceEEEEe
Q 004537 88 GAALSRASSASLGLSFSFTGFT----------MPPDEIADSKPFSDDDIPEDIEAGTRERPKFQ---TEPTLPIYLKFTD 154 (746)
Q Consensus 88 g~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~n 154 (746)
|+.+...+...-|......... .|..+....-..+..++-+.++..++..+... ........++|+|
T Consensus 276 G~~li~~~~~~~g~v~~v~~~vl~g~~sLgqa~p~l~~f~~a~~aa~~I~~~i~~~~~i~~~~~~~~~~~~~~g~ief~n 355 (1228)
T KOG0055|consen 276 GSTLILNGGYNGGDVITVFFSVLIGGMSLGQASPHLSAFAKARAAAYRIFETIDRKPSIDPYSKGGRVLSSIKGEIEFRN 355 (1228)
T ss_pred HHHHHhcCCCCCceEEEEEeehhhhhhhhhccccchHHHhccccchHHHHHHhcCCCCCCcccccCCcccccccceEEEE
Confidence 8888888766665554433222 12221111111112222222222222111110 1112345799999
Q ss_pred EEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCC----hhccCc
Q 004537 155 VTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS----KSLKSK 230 (746)
Q Consensus 155 vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~----~~~~~~ 230 (746)
|+|+|+. +++..||+|+|+.|++|+.+||+|||||||||++++|. |+++|. +|+|++||.|+. +.+|++
T Consensus 356 V~FsYPs-----Rpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~-RfydP~-~G~V~idG~di~~~~~~~lr~~ 428 (1228)
T KOG0055|consen 356 VCFSYPS-----RPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLA-RFYDPT-SGEVLIDGEDIRNLNLKWLRSQ 428 (1228)
T ss_pred EEecCCC-----CCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHH-HhcCCC-CceEEEcCccchhcchHHHHhh
Confidence 9999953 35678999999999999999999999999999999999 577765 899999999985 357899
Q ss_pred EEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHHHHH
Q 004537 231 IGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEI 310 (746)
Q Consensus 231 i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL 310 (746)
||.|.|+|.||. .||+|||.|+......+++.++.+.+.+.+.+..+ ++..||.+|+..+. ||||||||++|||||
T Consensus 429 iglV~QePvlF~-~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~l--p~g~~T~vge~g~q-LSGGQKQRIAIARal 504 (1228)
T KOG0055|consen 429 IGLVSQEPVLFA-TTIRENIRYGKPDATREEIEEAAKAANAHDFILKL--PDGYDTLVGERGVQ-LSGGQKQRIAIARAL 504 (1228)
T ss_pred cCeeeechhhhc-ccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhh--HHhhcccccCCCCC-CChHHHHHHHHHHHH
Confidence 999999999996 69999999984221111122222333355566554 88999999987654 999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHHH
Q 004537 311 IINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (746)
Q Consensus 311 ~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 385 (746)
++||+|||||||||+||++++..+.+.|++..+ |+|.|+++|++++ .+.+|+|++|++|+|++.|+|+|+++
T Consensus 505 v~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~-grTTivVaHRLSt--IrnaD~I~v~~~G~IvE~G~h~ELi~ 576 (1228)
T KOG0055|consen 505 VRNPKILLLDEATSALDAESERVVQEALDKASK-GRTTIVVAHRLST--IRNADKIAVMEEGKIVEQGTHDELIA 576 (1228)
T ss_pred HhCCCEEEecCcccccCHHHHHHHHHHHHHhhc-CCeEEEEeeehhh--hhccCEEEEEECCEEEEecCHHHHHh
Confidence 999999999999999999999999999998764 9999999999875 46699999999999999999999986
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-50 Score=405.96 Aligned_cols=220 Identities=30% Similarity=0.566 Sum_probs=199.6
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (746)
+|+|+|||+.| +++.+++|+|++|++||+++++|||||||||+||+|.+ +.+| ++|+|++||+++++
T Consensus 1 MI~~~nvsk~y--------~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINr-Liep-t~G~I~i~g~~i~~~d~ 70 (309)
T COG1125 1 MIEFENVSKRY--------GNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINR-LIEP-TSGEILIDGEDISDLDP 70 (309)
T ss_pred Cceeeeeehhc--------CCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhc-ccCC-CCceEEECCeecccCCH
Confidence 37999999998 46789999999999999999999999999999999995 5554 58999999999864
Q ss_pred -hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHH
Q 004537 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (746)
Q Consensus 226 -~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv 304 (746)
++|++||||-|.-.|||++||.|||.+...+. ..+++..+++++|+++.+||++. ...++++++|||||+|||
T Consensus 71 ~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~---~w~k~~i~~r~~ELl~lvgL~p~---~~~~RyP~eLSGGQQQRV 144 (309)
T COG1125 71 VELRRKIGYVIQQIGLFPHLTVAENIATVPKLL---GWDKERIKKRADELLDLVGLDPS---EYADRYPHELSGGQQQRV 144 (309)
T ss_pred HHHHHhhhhhhhhcccCCCccHHHHHHhhhhhc---CCCHHHHHHHHHHHHHHhCCCHH---HHhhcCchhcCcchhhHH
Confidence 58999999999999999999999999987654 45788899999999999999752 123467899999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHH
Q 004537 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (746)
Q Consensus 305 ~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 383 (746)
.+||||+.+|+||++|||+++|||.++.++.+.++++.++ |+|||++|||.. +.++++|||++|++|+++..++|+++
T Consensus 145 Gv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDid-EA~kLadri~vm~~G~i~Q~~~P~~i 223 (309)
T COG1125 145 GVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDID-EALKLADRIAVMDAGEIVQYDTPDEI 223 (309)
T ss_pred HHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHH-HHHhhhceEEEecCCeEEEeCCHHHH
Confidence 9999999999999999999999999999999999999765 999999999975 68899999999999999999999998
Q ss_pred HH
Q 004537 384 MA 385 (746)
Q Consensus 384 ~~ 385 (746)
+.
T Consensus 224 l~ 225 (309)
T COG1125 224 LA 225 (309)
T ss_pred Hh
Confidence 74
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-51 Score=478.44 Aligned_cols=362 Identities=23% Similarity=0.327 Sum_probs=276.7
Q ss_pred hHHHHHHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeeccccccceecchhchhh
Q 004537 10 LARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSGA 89 (746)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 89 (746)
..++..+.-++..+...|.+.+.+|+++.+.++....+..++..+....+.+..--......-...+|.-..+.-++.|+
T Consensus 320 ~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~v~iL~~G~ 399 (709)
T COG2274 320 KTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLALILNTIKSLLQQLSSVLILWFGA 399 (709)
T ss_pred HHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555566777889999999999999999999999999998887777653333333333345555666777789999
Q ss_pred hhhhhcccccchhhhhcccccC----hhhhccCCC------CCCCCCcccccccCCCC-CC-CCCCCCCCceEEEEeEEE
Q 004537 90 ALSRASSASLGLSFSFTGFTMP----PDEIADSKP------FSDDDIPEDIEAGTRER-PK-FQTEPTLPIYLKFTDVTY 157 (746)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~------~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~l~~~nvs~ 157 (746)
.++..+.+++|.+..|..+... ...+.+.-. ....++.+.+..+.+.. +. ....+.....++|+||+|
T Consensus 400 ~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~~~~~~~~~~~~~~g~I~~~nvsf 479 (709)
T COG2274 400 ILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEGDKTLIHLPKLQGEIEFENVSF 479 (709)
T ss_pred HHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccccccccCceEEEEEEEE
Confidence 9999999999999999865543 222221100 00111111122221111 11 123344556899999999
Q ss_pred EEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh----hccCcEEE
Q 004537 158 KVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGF 233 (746)
Q Consensus 158 ~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~----~~~~~i~y 233 (746)
+|. ..+..+|+|+|++|+|||.+||+|+||||||||+|+|+|. +. +.+|+|++||.|+.+ .+|++|||
T Consensus 480 ~y~------~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gl-y~-p~~G~I~~dg~dl~~i~~~~lR~~ig~ 551 (709)
T COG2274 480 RYG------PDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGL-YK-PQQGRILLDGVDLNDIDLASLRRQVGY 551 (709)
T ss_pred EeC------CCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcC-CC-CCCceEEECCEeHHhcCHHHHHhheeE
Confidence 993 2334799999999999999999999999999999999985 44 458999999999863 57999999
Q ss_pred EecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHHHHHhhC
Q 004537 234 VTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIIN 313 (746)
Q Consensus 234 v~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~ 313 (746)
|+||+.+|.. |++||+.++......+.+-++...+.+++.+..+ +..+||.+|+. ..+||||||||++|||||+++
T Consensus 552 V~Q~~~Lf~g-SI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~l--P~gy~t~v~E~-G~~LSGGQrQrlalARaLl~~ 627 (709)
T COG2274 552 VLQDPFLFSG-SIRENIALGNPEATDEEIIEAAQLAGAHEFIENL--PMGYDTPVGEG-GANLSGGQRQRLALARALLSK 627 (709)
T ss_pred EcccchhhcC-cHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhc--ccccccccccC-CCCCCHHHHHHHHHHHHhccC
Confidence 9999999974 9999999874321111122233334456666654 78899999865 457999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHHHH
Q 004537 314 PSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAY 386 (746)
Q Consensus 314 p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~~ 386 (746)
|+||+||||||+||+.+++.|.+.|.++.+ |+|+|+++|+++. .+.||+|+||++|++++.|+|+|+++.
T Consensus 628 P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~-~~T~I~IaHRl~t--i~~adrIiVl~~Gkiv~~gs~~ell~~ 697 (709)
T COG2274 628 PKILLLDEATSALDPETEAIILQNLLQILQ-GRTVIIIAHRLST--IRSADRIIVLDQGKIVEQGSHEELLAQ 697 (709)
T ss_pred CCEEEEeCcccccCHhHHHHHHHHHHHHhc-CCeEEEEEccchH--hhhccEEEEccCCceeccCCHHHHHHh
Confidence 999999999999999999999999999865 8999999999874 789999999999999999999999874
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-50 Score=412.04 Aligned_cols=222 Identities=28% Similarity=0.459 Sum_probs=198.6
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (746)
+|+++||++.|..+ ..+...+|+|||++|++||+++|+|.||||||||+|+|.+ +.. |++|+|.+||+++..
T Consensus 1 mI~l~~vsK~~~~~---~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~-Le~-PtsG~v~v~G~di~~l~~ 75 (339)
T COG1135 1 MIELENVSKTFGQT---GTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINL-LER-PTSGSVFVDGQDLTALSE 75 (339)
T ss_pred CeEEEeeeeeeccC---CCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhc-cCC-CCCceEEEcCEecccCCh
Confidence 37899999988431 1234579999999999999999999999999999999996 444 569999999988752
Q ss_pred ----hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHH
Q 004537 226 ----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301 (746)
Q Consensus 226 ----~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGer 301 (746)
..|++||++||++.|+...||.||+.|...+. ..++++.++++.++++.+||++..+. ++.+||||||
T Consensus 76 ~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeia---g~~k~ei~~RV~elLelVgL~dk~~~-----yP~qLSGGQK 147 (339)
T COG1135 76 AELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELA---GVPKAEIKQRVAELLELVGLSDKADR-----YPAQLSGGQK 147 (339)
T ss_pred HHHHHHHhhccEEeccccccccchHHhhhhhhHhhc---CCCHHHHHHHHHHHHHHcCChhhhcc-----CchhcCcchh
Confidence 46789999999999999999999999998765 36789999999999999999988874 5789999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCH
Q 004537 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380 (746)
Q Consensus 302 qRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~ 380 (746)
|||+|||||+.+|+||++|||||+|||.+...|++.|+++.++ |.||+++||++. .+.+.||||.+|++|++++.|+.
T Consensus 148 QRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~-Vvk~ic~rVavm~~G~lvE~G~v 226 (339)
T COG1135 148 QRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEME-VVKRICDRVAVLDQGRLVEEGTV 226 (339)
T ss_pred hHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHH-HHHHHhhhheEeeCCEEEEeccH
Confidence 9999999999999999999999999999999999999999765 999999999975 57889999999999999999999
Q ss_pred HHHH
Q 004537 381 SEAM 384 (746)
Q Consensus 381 ~~~~ 384 (746)
.++.
T Consensus 227 ~~vF 230 (339)
T COG1135 227 SEVF 230 (339)
T ss_pred HHhh
Confidence 8874
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-48 Score=391.71 Aligned_cols=221 Identities=32% Similarity=0.516 Sum_probs=199.2
Q ss_pred ceEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh--
Q 004537 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (746)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (746)
..|++++|+++| +++.||+|||++|++||+++||||||+|||||||+|.|.+. +.+|+|.++|+++.+
T Consensus 7 ~~I~vr~v~~~f--------G~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~--P~~GeI~i~G~~i~~ls 76 (263)
T COG1127 7 PLIEVRGVTKSF--------GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLR--PDKGEILIDGEDIPQLS 76 (263)
T ss_pred ceEEEeeeeeec--------CCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCC--CCCCeEEEcCcchhccC
Confidence 369999999998 67899999999999999999999999999999999999653 568999999998742
Q ss_pred -----hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHH
Q 004537 226 -----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGE 300 (746)
Q Consensus 226 -----~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGe 300 (746)
+.++++|++||+..||..+||+||+.|..+- ...++++..++.+..-|+.+||... +++.++.+|||||
T Consensus 77 ~~~~~~ir~r~GvlFQ~gALFssltV~eNVafplre--~~~lp~~~i~~lv~~KL~~VGL~~~----~~~~~PsELSGGM 150 (263)
T COG1127 77 EEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLRE--HTKLPESLIRELVLMKLELVGLRGA----AADLYPSELSGGM 150 (263)
T ss_pred HHHHHHHHhheeEEeeccccccccchhHhhheehHh--hccCCHHHHHHHHHHHHHhcCCChh----hhhhCchhhcchH
Confidence 4578999999999999999999999997542 3457788888899999999999865 1235788999999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecC
Q 004537 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (746)
Q Consensus 301 rqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (746)
+||++||||++.||+|||+||||+||||.++..+-++++++.+. |.|++++|||.. +++..||++++|.+|+|+..|+
T Consensus 151 ~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~-s~~~i~Drv~~L~~gkv~~~Gt 229 (263)
T COG1127 151 RKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLD-SLLTIADRVAVLADGKVIAEGT 229 (263)
T ss_pred HHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChH-HHHhhhceEEEEeCCEEEEeCC
Confidence 99999999999999999999999999999999999999999876 999999999976 4889999999999999999999
Q ss_pred HHHHHH
Q 004537 380 ASEAMA 385 (746)
Q Consensus 380 ~~~~~~ 385 (746)
++|+.+
T Consensus 230 ~~el~~ 235 (263)
T COG1127 230 PEELLA 235 (263)
T ss_pred HHHHHh
Confidence 999864
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-48 Score=414.17 Aligned_cols=222 Identities=34% Similarity=0.582 Sum_probs=199.6
Q ss_pred eEEEEeEEEEEeeccccccc-cccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh--
Q 004537 149 YLKFTDVTYKVILKGMTSSE-EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~-~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (746)
.++++||+++| + ++.+|+||||+|++||++||+||||||||||+|+|+|... +++|+|.++|.+..+
T Consensus 4 ~i~~~~l~k~~--------~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~--p~~G~i~i~G~~~~~~~ 73 (293)
T COG1131 4 VIEVRNLTKKY--------GGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLK--PTSGEILVLGYDVVKEP 73 (293)
T ss_pred eeeecceEEEe--------CCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEEcCEeCccCH
Confidence 47899999998 4 5789999999999999999999999999999999999654 468999999998764
Q ss_pred -hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHH
Q 004537 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (746)
Q Consensus 226 -~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv 304 (746)
..++++||++|++.+++.+||+|||.|.+.++... ....+++++++++.+||.+..++ .+++||+|||||+
T Consensus 74 ~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~---~~~~~~~~~~~l~~~~L~~~~~~-----~~~~lS~G~kqrl 145 (293)
T COG1131 74 AKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLS---KEEAEERIEELLELFGLEDKANK-----KVRTLSGGMKQRL 145 (293)
T ss_pred HHHHhheEEEccCCCCCccccHHHHHHHHHHHhCCC---hhHHHHHHHHHHHHcCCchhhCc-----chhhcCHHHHHHH
Confidence 56789999999999999999999999999887542 24567789999999999985444 3568999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCC-CEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHH
Q 004537 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAG-KTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (746)
Q Consensus 305 ~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g-~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 383 (746)
+||+||+.+|++|||||||+||||.++.++.+.|++++++| +||+++||++. ++...||+|++|++|++++.|+++++
T Consensus 146 ~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~-e~~~~~d~v~il~~G~~~~~g~~~~l 224 (293)
T COG1131 146 SIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILE-EAEELCDRVIILNDGKIIAEGTPEEL 224 (293)
T ss_pred HHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHH-HHHHhCCEEEEEeCCEEEEeCCHHHH
Confidence 99999999999999999999999999999999999999887 89999999976 58888999999999999999999998
Q ss_pred HHHHHh
Q 004537 384 MAYFSS 389 (746)
Q Consensus 384 ~~~f~~ 389 (746)
...+..
T Consensus 225 ~~~~~~ 230 (293)
T COG1131 225 KEKFGG 230 (293)
T ss_pred HHhhcc
Confidence 776654
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-48 Score=419.43 Aligned_cols=234 Identities=27% Similarity=0.466 Sum_probs=208.1
Q ss_pred ceEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh--
Q 004537 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (746)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (746)
..++++||+++| ++..+|+|+|++|++||+++|+||||||||||||+|+|.. .+++|+|.+||++++.
T Consensus 4 ~~l~i~~v~k~y--------g~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe--~p~~G~I~l~G~~i~~lp 73 (352)
T COG3842 4 PALEIRNVSKSF--------GDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFE--QPSSGEILLDGEDITDVP 73 (352)
T ss_pred ceEEEEeeeeec--------CCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCC--CCCCceEEECCEECCCCC
Confidence 369999999999 4678999999999999999999999999999999999943 3569999999999974
Q ss_pred hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHH
Q 004537 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (746)
Q Consensus 226 ~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~ 305 (746)
..+|.||+|||+..|||+|||+||+.|+.+.+ ....+++.+++++++++.++|++..+. ++.+|||||||||+
T Consensus 74 p~kR~ig~VFQ~YALFPHltV~~NVafGLk~~--~~~~~~~i~~rv~e~L~lV~L~~~~~R-----~p~qLSGGQqQRVA 146 (352)
T COG3842 74 PEKRPIGMVFQSYALFPHMTVEENVAFGLKVR--KKLKKAEIKARVEEALELVGLEGFADR-----KPHQLSGGQQQRVA 146 (352)
T ss_pred hhhcccceeecCcccCCCCcHHHHhhhhhhhc--CCCCHHHHHHHHHHHHHHcCchhhhhh-----ChhhhChHHHHHHH
Confidence 46889999999999999999999999998733 334567788999999999999987764 56899999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHH
Q 004537 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (746)
Q Consensus 306 IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (746)
|||||+.+|++|+||||.|+||..-+.++...|+++.++ |.|.|++|||. ++.+.++|||++|++|+|...|+++|+.
T Consensus 147 LARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDq-eEAl~msDrI~Vm~~G~I~Q~gtP~eiY 225 (352)
T COG3842 147 LARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQ-EEALAMSDRIAVMNDGRIEQVGTPEEIY 225 (352)
T ss_pred HHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCH-HHHhhhccceEEccCCceeecCCHHHHh
Confidence 999999999999999999999999999999999999765 99999999995 4678999999999999999999999984
Q ss_pred HHHHhcCCCCCCCCChHHHHHHh
Q 004537 385 AYFSSIGCSPQIAMNPAEFLLDL 407 (746)
Q Consensus 385 ~~f~~~G~~~~~~~npad~~~~~ 407 (746)
..|...=.|||+-+.
T Consensus 226 --------~~P~~~fVA~FiG~~ 240 (352)
T COG3842 226 --------ERPATRFVADFIGES 240 (352)
T ss_pred --------hCcchHHHHHHhCcc
Confidence 345555567777653
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-48 Score=414.87 Aligned_cols=218 Identities=28% Similarity=0.493 Sum_probs=199.0
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh--h
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--S 226 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--~ 226 (746)
.|+++||++.| ++..+|+|+|++|++||+++|+||||||||||||+|+|.. .+++|+|.++|+++++ .
T Consensus 3 ~i~l~~v~K~y--------g~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe--~~~~G~I~i~g~~vt~l~P 72 (338)
T COG3839 3 ELELKNVRKSF--------GSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLE--EPTSGEILIDGRDVTDLPP 72 (338)
T ss_pred EEEEeeeEEEc--------CCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC--CCCCceEEECCEECCCCCh
Confidence 58999999998 2222999999999999999999999999999999999953 3569999999999974 4
Q ss_pred ccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHH
Q 004537 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (746)
Q Consensus 227 ~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~I 306 (746)
.+|.||+|||+..|||+|||+||+.|+.+.+ ..++++.+++++++.+.|+|++..|+. +++|||||||||+|
T Consensus 73 ~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~---~~~k~ei~~rV~eva~~L~l~~lL~r~-----P~~LSGGQrQRVAl 144 (338)
T COG3839 73 EKRGIAMVFQNYALYPHMTVYENIAFGLKLR---GVPKAEIDKRVKEVAKLLGLEHLLNRK-----PLQLSGGQRQRVAL 144 (338)
T ss_pred hHCCEEEEeCCccccCCCcHHHHhhhhhhhC---CCchHHHHHHHHHHHHHcCChhHHhcC-----cccCChhhHHHHHH
Confidence 5789999999999999999999999998765 357888999999999999999988864 67999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHHH
Q 004537 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (746)
Q Consensus 307 A~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 385 (746)
||||+++|++++||||+|+||+..+..+...|+++.++ |.|+|.+|||. .++..++|||++|++|+|...|++.|+.+
T Consensus 145 aRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq-~EAmtladri~Vm~~G~i~Q~g~p~ely~ 223 (338)
T COG3839 145 ARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQ-VEAMTLADRIVVMNDGRIQQVGTPLELYE 223 (338)
T ss_pred HHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCH-HHHHhhCCEEEEEeCCeeeecCChHHHhh
Confidence 99999999999999999999999999999999999765 89999999996 46889999999999999999999999854
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-48 Score=402.03 Aligned_cols=220 Identities=31% Similarity=0.481 Sum_probs=193.7
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCC----
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---- 224 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~---- 224 (746)
.++++||++.| +++++|+|+||++++||+++|+||||||||||||+|+|.+. +.+|+|.+||+++.
T Consensus 2 ~L~~~~ls~~y--------~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~--p~~G~V~l~g~~i~~~~~ 71 (258)
T COG1120 2 MLEVENLSFGY--------GGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLK--PKSGEVLLDGKDIASLSP 71 (258)
T ss_pred eeEEEEEEEEE--------CCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCC--CCCCEEEECCCchhhcCH
Confidence 48999999999 46789999999999999999999999999999999998653 46899999999985
Q ss_pred hhccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCC-CCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHH
Q 004537 225 KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPN-TLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (746)
Q Consensus 225 ~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqR 303 (746)
+++.+++|||||.+.....+||+|-+.++..-.... ....+++++.++++++.+|+.+.+++.+ .+||||||||
T Consensus 72 kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~-----~~LSGGerQr 146 (258)
T COG1120 72 KELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPV-----DELSGGERQR 146 (258)
T ss_pred HHHhhhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcc-----cccChhHHHH
Confidence 356789999999988777899999999985321111 1224455668999999999999988754 6899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHH
Q 004537 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (746)
Q Consensus 304 v~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~-~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~ 382 (746)
|.|||||+.+|+||+||||||.||...+.++++.++++++ +|+|||+++||+.. ..++||++++|++|+++..|++++
T Consensus 147 v~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~-A~ryad~~i~lk~G~i~a~G~p~e 225 (258)
T COG1120 147 VLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNL-AARYADHLILLKDGKIVAQGTPEE 225 (258)
T ss_pred HHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-HHHhCCEEEEEECCeEEeecCcch
Confidence 9999999999999999999999999999999999999985 49999999999875 679999999999999999999988
Q ss_pred HH
Q 004537 383 AM 384 (746)
Q Consensus 383 ~~ 384 (746)
++
T Consensus 226 vl 227 (258)
T COG1120 226 VL 227 (258)
T ss_pred hc
Confidence 75
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-49 Score=471.75 Aligned_cols=357 Identities=23% Similarity=0.352 Sum_probs=274.0
Q ss_pred HhHHHHHHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeeccccccceecchhchh
Q 004537 9 SLARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSG 88 (746)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 88 (746)
+-+++.++...++...|.|..++.+||++++.+.--...|.+.+.+....+.++++-.|.-.-.+.+...-......++|
T Consensus 834 ~~~~~~~~~~~ea~~iA~eai~NIrTV~al~~e~~~~~~y~~~l~~p~~~~~~~~~i~gl~f~~sqs~~~~~~A~~f~~G 913 (1228)
T KOG0055|consen 834 GFSKDDKKAYEEASKIAIEAVSNIRTVAALCAEEKFMELYKEELEKPRKSSFKRGLISGLGFGFSQSLLFFVYALSFWYG 913 (1228)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566788899999999999999999999999999999999888877777776666666553445555556677778899
Q ss_pred hhhhhhcccccchhhhhc-ccccChhhhccCCCCCCCCCcc----------cccccCCCCCC---CCCCCCCCceEEEEe
Q 004537 89 AALSRASSASLGLSFSFT-GFTMPPDEIADSKPFSDDDIPE----------DIEAGTRERPK---FQTEPTLPIYLKFTD 154 (746)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~---~~~~~~~~~~l~~~n 154 (746)
+.++..+..+....+--. .+++-...+..... ..+|+.+ .++..++..+. ....+.....++|+|
T Consensus 914 ~~Li~~g~~~~~~~~~vf~~l~~ta~~~~~~~s-~~Pd~~ka~~Aa~~iF~i~dr~~~i~~~~~~~~~~~~~~G~I~~~~ 992 (1228)
T KOG0055|consen 914 ARLISNGEMTFEDVFRVFMALSFTAMALGQASS-YAPDISKAKIAAGSIFEILDRKPTIDPDSTSGGKLPNVKGDIEFRN 992 (1228)
T ss_pred HHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHh-hCcHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccceeEEEEee
Confidence 999998866554433222 11111111110000 0011111 01111111111 001223445799999
Q ss_pred EEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh----hccCc
Q 004537 155 VTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSK 230 (746)
Q Consensus 155 vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~----~~~~~ 230 (746)
|+|.|+ .+++.+||+|+|+++++|+.+||||||||||||.+.+|- |+++|. +|.|.+||+|+++ .+|++
T Consensus 993 V~F~YP-----sRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLe-RfYdp~-~G~V~IDg~dik~lnl~~LR~~ 1065 (1228)
T KOG0055|consen 993 VSFAYP-----TRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLE-RFYDPD-AGKVKIDGVDIKDLNLKWLRKQ 1065 (1228)
T ss_pred eEeeCC-----CCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHH-HhcCCC-CCeEEECCcccccCCHHHHHHh
Confidence 999995 346789999999999999999999999999999999999 788765 8999999999863 67999
Q ss_pred EEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHH-----HHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHH
Q 004537 231 IGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQ-----KEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (746)
Q Consensus 231 i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~-----~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~ 305 (746)
+|.|.|+|.||. -|++|||.|+.. + .+.++ +.+.+++.+. +|++.+||.+|++.. +||||||||++
T Consensus 1066 i~lVsQEP~LF~-~TIrENI~YG~~----~-vs~~eIi~Aak~ANaH~FI~--sLP~GyDT~vGerG~-QLSGGQKQRIA 1136 (1228)
T KOG0055|consen 1066 IGLVSQEPVLFN-GTIRENIAYGSE----E-VSEEEIIEAAKLANAHNFIS--SLPQGYDTRVGERGV-QLSGGQKQRIA 1136 (1228)
T ss_pred cceeccCchhhc-ccHHHHHhccCC----C-CCHHHHHHHHHHhhhHHHHh--cCcCcccCccCcccC-cCCchHHHHHH
Confidence 999999999997 599999999921 1 33333 3334555555 569999999997654 69999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHHH
Q 004537 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (746)
Q Consensus 306 IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 385 (746)
||||+++||+||||||.||+||+++++.+.+.|.+.. .|+|.|+++|++++ .+.||.|+|+++|+|++.|+|+++++
T Consensus 1137 IARAilRnPkILLLDEATSALDseSErvVQeALd~a~-~gRT~IvIAHRLST--IqnaD~I~Vi~~G~VvE~GtH~~L~~ 1213 (1228)
T KOG0055|consen 1137 IARAILRNPKILLLDEATSALDSESERVVQEALDRAM-EGRTTIVIAHRLST--IQNADVIAVLKNGKVVEQGTHDELLA 1213 (1228)
T ss_pred HHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhh-cCCcEEEEecchhh--hhcCCEEEEEECCEEEecccHHHHHh
Confidence 9999999999999999999999999999999999975 49999999999985 68899999999999999999999986
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-47 Score=393.52 Aligned_cols=219 Identities=31% Similarity=0.547 Sum_probs=189.4
Q ss_pred ceEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCChhc
Q 004537 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (746)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~ 227 (746)
..|+++|+++.|. .+ ++|+||||++++|++++|+||||||||||+|+|.|.+. +.+|+|.++|++..+..
T Consensus 3 ~~i~v~nl~v~y~-------~~-~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~--p~~G~i~~~g~~~~~~~ 72 (254)
T COG1121 3 PMIEVENLTVSYG-------NR-PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLK--PSSGEIKIFGKPVRKRR 72 (254)
T ss_pred cEEEEeeeEEEEC-------CE-eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc--CCcceEEEccccccccc
Confidence 3699999999992 23 69999999999999999999999999999999999653 46899999999876543
Q ss_pred -cCcEEEEecC---CcCCCCCCHHHHHHHHHhccCC--CCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHH
Q 004537 228 -KSKIGFVTQD---DVLFPHLTVKETLTYAALLRLP--NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301 (746)
Q Consensus 228 -~~~i~yv~Q~---~~l~~~lTV~E~l~~~~~~~~~--~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGer 301 (746)
+.+||||||. |.-|| +||+|.+..+...+.. ... .+.+++.++++|+++|+.+.+|..+| +|||||+
T Consensus 73 ~~~~IgYVPQ~~~~d~~fP-~tV~d~V~~g~~~~~g~~~~~-~~~d~~~v~~aL~~Vgm~~~~~r~i~-----~LSGGQ~ 145 (254)
T COG1121 73 KRLRIGYVPQKSSVDRSFP-ITVKDVVLLGRYGKKGWFRRL-NKKDKEKVDEALERVGMEDLRDRQIG-----ELSGGQK 145 (254)
T ss_pred cCCeEEEcCcccccCCCCC-cCHHHHHHccCcccccccccc-cHHHHHHHHHHHHHcCchhhhCCccc-----ccCcHHH
Confidence 4689999995 34577 7999999987433221 122 23447889999999999999998875 7999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHH
Q 004537 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 381 (746)
Q Consensus 302 qRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 381 (746)
|||.|||||+.+|++|+|||||+|+|+.++..|+++|++++++|+||++++||+.. +.+.||+|++|+ ++++..|+++
T Consensus 146 QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~-v~~~~D~vi~Ln-~~~~~~G~~~ 223 (254)
T COG1121 146 QRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGL-VMAYFDRVICLN-RHLIASGPPE 223 (254)
T ss_pred HHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHH-hHhhCCEEEEEc-CeeEeccChh
Confidence 99999999999999999999999999999999999999999889999999999874 889999999995 6889999998
Q ss_pred HHHH
Q 004537 382 EAMA 385 (746)
Q Consensus 382 ~~~~ 385 (746)
++..
T Consensus 224 ~~~~ 227 (254)
T COG1121 224 EVLT 227 (254)
T ss_pred hccC
Confidence 8754
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-47 Score=386.67 Aligned_cols=210 Identities=34% Similarity=0.561 Sum_probs=180.8
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh----
Q 004537 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (746)
++++||++.|..++ ....+|+++|++|++||+++|+|||||||||||++|.|.. . +++|.|.++|+++..
T Consensus 2 i~~~~v~k~y~~~~----~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld-~-pt~G~v~i~g~d~~~l~~~ 75 (226)
T COG1136 2 IELKNVSKIYGLGG----EKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLD-K-PTSGEVLINGKDLTKLSEK 75 (226)
T ss_pred cEEeeeEEEeccCC----cceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccc-C-CCCceEEECCEEcCcCCHH
Confidence 67899999884322 2357999999999999999999999999999999999854 3 469999999988752
Q ss_pred ---h-ccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHH
Q 004537 226 ---S-LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301 (746)
Q Consensus 226 ---~-~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGer 301 (746)
. .+++||||||+..|+|++||+||+.+...+.. .+....+++++++++.+||++..+. .++.+||||||
T Consensus 76 ~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~---~~~~~~~~~~~~l~~~lgl~~~~~~----~~p~eLSGGqq 148 (226)
T COG1136 76 ELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAG---KSAGRRKRAAEELLEVLGLEDRLLK----KKPSELSGGQQ 148 (226)
T ss_pred HHHHHHHHhEEEECccCCCCCCCCHHHHHHhHHHHcC---CChhHHHHHHHHHHHhcCChhhhcc----CCchhcCHHHH
Confidence 2 35679999999999999999999998765442 2232567778899999999876652 34679999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeE
Q 004537 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (746)
Q Consensus 302 qRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~i 374 (746)
|||+|||||+.+|++|+.||||.+||+.++.+|+++|++++++ |+|||++|||+. +...|||++.|.+|++
T Consensus 149 QRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~--lA~~~dr~i~l~dG~~ 220 (226)
T COG1136 149 QRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPE--LAKYADRVIELKDGKI 220 (226)
T ss_pred HHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHH--HHHhCCEEEEEeCCee
Confidence 9999999999999999999999999999999999999999865 999999999964 6789999999999984
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-47 Score=388.10 Aligned_cols=204 Identities=32% Similarity=0.513 Sum_probs=184.0
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCChhcc
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~ 228 (746)
.+++++|++.| +...+|+|+|++|++||+++|+||||||||||||+|+|.. .+.+|+|.++|.++ ....
T Consensus 3 ~l~i~~v~~~f--------~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~--~p~~G~V~~~g~~v-~~p~ 71 (248)
T COG1116 3 LLEIEGVSKSF--------GGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLE--KPTSGEVLLDGRPV-TGPG 71 (248)
T ss_pred eEEEEeeEEEe--------CceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCC--CCCCceEEECCccc-CCCC
Confidence 58899999998 3478999999999999999999999999999999999954 35689999999998 4556
Q ss_pred CcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHHH
Q 004537 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGN 308 (746)
Q Consensus 229 ~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~ 308 (746)
..++||||++.|+|.+||+||+.++...+. .++++.++++++.|+.+||.+..|. ++++|||||||||+|||
T Consensus 72 ~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~---~~~~e~~~~a~~~L~~VgL~~~~~~-----~P~qLSGGMrQRVaiAR 143 (248)
T COG1116 72 PDIGYVFQEDALLPWLTVLDNVALGLELRG---KSKAEARERAKELLELVGLAGFEDK-----YPHQLSGGMRQRVAIAR 143 (248)
T ss_pred CCEEEEeccCcccchhhHHhhheehhhccc---cchHhHHHHHHHHHHHcCCcchhhc-----CccccChHHHHHHHHHH
Confidence 789999999999999999999999987542 4566777799999999999988774 67899999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCC
Q 004537 309 EIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKG 372 (746)
Q Consensus 309 aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G 372 (746)
||+.+|+||+||||+++||+.++.++.+.|.++.++ ++||+++|||.. |...++|||++|.++
T Consensus 144 AL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~-EAv~LsdRivvl~~~ 207 (248)
T COG1116 144 ALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVD-EAVYLADRVVVLSNR 207 (248)
T ss_pred HHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHhhhCEEEEecCC
Confidence 999999999999999999999999999999998754 899999999976 566899999999984
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-48 Score=454.14 Aligned_cols=362 Identities=23% Similarity=0.316 Sum_probs=260.5
Q ss_pred hHhHHHHHHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeeccccccceecchhch
Q 004537 8 TSLARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSS 87 (746)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (746)
.+..++.++..++..+...|..++.+++|+|+.+..+.+++.++..+......+.....+........+..-..+.-+..
T Consensus 177 ~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (567)
T COG1132 177 RKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLLLSSLGTVLVLAL 256 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777888999999999999999999999999999988888876655544432111111111011111111223334457
Q ss_pred hhhhhhhcccccchhhhhcccccCh----hhhccCCC------CCCCCCcccccccCCCCCCCCCCCCCCceEEEEeEEE
Q 004537 88 GAALSRASSASLGLSFSFTGFTMPP----DEIADSKP------FSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFTDVTY 157 (746)
Q Consensus 88 g~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~nvs~ 157 (746)
|..+...+.++.|....|..+.... ..+..... .+..++.+.+...+...............++|+||+|
T Consensus 257 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~I~f~~vsf 336 (567)
T COG1132 257 GGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVEDPPDPLKDTIGSIEFENVSF 336 (567)
T ss_pred HHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCCCCCCCCeEEEEEEEE
Confidence 7777777778888877777554322 11111000 0001111111111100000000111234599999999
Q ss_pred EEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh----hccCcEEE
Q 004537 158 KVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGF 233 (746)
Q Consensus 158 ~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~----~~~~~i~y 233 (746)
.|+ +++++|+|+|++++|||.+||+||||||||||+++|.| ++++ .+|+|.+||+|+++ .+|++|+|
T Consensus 337 ~y~-------~~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r-~~~~-~~G~I~idg~dI~~i~~~~lr~~I~~ 407 (567)
T COG1132 337 SYP-------GKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLR-LYDP-TSGEILIDGIDIRDISLDSLRKRIGI 407 (567)
T ss_pred EcC-------CCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhc-cCCC-CCCeEEECCEehhhcCHHHHHHhccE
Confidence 992 25789999999999999999999999999999999996 5555 58999999999863 57899999
Q ss_pred EecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHHHHHhhC
Q 004537 234 VTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIIN 313 (746)
Q Consensus 234 v~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~ 313 (746)
|+||+.+|. -||+|||.++......+++.++.+.+.+++.++.+ +++.||.+|+. ...||||||||++||||+++|
T Consensus 408 V~Qd~~LF~-~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~l--p~g~dt~vge~-G~~LSgGQrQrlaiARall~~ 483 (567)
T COG1132 408 VSQDPLLFS-GTIRENIALGRPDATDEEIEEALKLANAHEFIANL--PDGYDTIVGER-GVNLSGGQRQRLAIARALLRN 483 (567)
T ss_pred Ecccceeec-ccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhC--cccccceecCC-CccCCHHHHHHHHHHHHHhcC
Confidence 999999998 69999999984321111222233333445556655 77899999954 456999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHHH
Q 004537 314 PSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (746)
Q Consensus 314 p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 385 (746)
|+||+||||||+||+.++..+.+.++++. +++|+|+++|++++ + +.||+|++|++|++++.|+|+|+++
T Consensus 484 ~~ILILDEaTSalD~~tE~~I~~~l~~l~-~~rT~iiIaHRlst-i-~~aD~IiVl~~G~i~e~G~h~eLl~ 552 (567)
T COG1132 484 PPILILDEATSALDTETEALIQDALKKLL-KGRTTLIIAHRLST-I-KNADRIIVLDNGRIVERGTHEELLA 552 (567)
T ss_pred CCEEEEeccccccCHHhHHHHHHHHHHHh-cCCEEEEEeccHhH-H-HhCCEEEEEECCEEEEecCHHHHHH
Confidence 99999999999999999999999999887 57899999999864 4 5599999999999999999999986
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-48 Score=453.09 Aligned_cols=352 Identities=19% Similarity=0.209 Sum_probs=237.8
Q ss_pred hHHHHHHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeeccccccceecchhchhh
Q 004537 10 LARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSGA 89 (746)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 89 (746)
..++.+++.++.++...|.+...+++|+++.+....+++.+..........+.................-..+.-+..|+
T Consensus 190 ~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (588)
T PRK11174 190 ANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRTMEVLRMAFLSSAVLEFFASISIALVAVYFG 269 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556777888889999999999999999999999999887766554432211100000000000000000001112222
Q ss_pred hhhhhcccccchh-hh------hc------ccccChhhhccC-------CCCCCCCCcccccccCCCCCCCC-CCC-CCC
Q 004537 90 ALSRASSASLGLS-FS------FT------GFTMPPDEIADS-------KPFSDDDIPEDIEAGTRERPKFQ-TEP-TLP 147 (746)
Q Consensus 90 ~~~~~~~~~~~~~-~~------~~------~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~ 147 (746)
... .+.++.|.+ .+ +. .+..|...+... .+ +..++.+.++..+...+... ..+ ...
T Consensus 270 ~~~-~g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~-~~~ri~~~l~~~~~~~~~~~~~~~~~~~ 347 (588)
T PRK11174 270 FSY-LGELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVG-AAESLVTFLETPLAHPQQGEKELASNDP 347 (588)
T ss_pred HHH-hcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcCCCcccCCCccccCCCCC
Confidence 222 255555532 11 00 011222221110 00 00111111111110000000 001 112
Q ss_pred ceEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh--
Q 004537 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (746)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (746)
..++|+||+|.|. +++++|+|+|++++|||.+||+||||||||||+++|+|. + | .+|+|.+||+++.+
T Consensus 348 ~~i~~~~vsf~~~-------~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~-~-p-~~G~I~i~g~~i~~~~ 417 (588)
T PRK11174 348 VTIEAEDLEILSP-------DGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGF-L-P-YQGSLKINGIELRELD 417 (588)
T ss_pred ceEEEEeeEEecc-------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC-C-C-CCcEEEECCEecccCC
Confidence 3599999998762 245799999999999999999999999999999999984 4 4 48999999998853
Q ss_pred --hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHH-----HHHHHHHHHcCCCccccccccCccccCCCH
Q 004537 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKE-----KRAIDVINELGLERCQDTMIGGSFVRGVSG 298 (746)
Q Consensus 226 --~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~-----~~v~~~l~~lgL~~~~~~~vg~~~~~~LSG 298 (746)
.+|++|+||+|++.+|+. |++|||.++. | +.++++.. ..+++.++. |++..||.+|+. ...|||
T Consensus 418 ~~~lr~~i~~v~Q~~~LF~~-TI~eNI~~g~----~-~~~~eei~~al~~a~l~~~i~~--lp~G~dT~vge~-G~~LSG 488 (588)
T PRK11174 418 PESWRKHLSWVGQNPQLPHG-TLRDNVLLGN----P-DASDEQLQQALENAWVSEFLPL--LPQGLDTPIGDQ-AAGLSV 488 (588)
T ss_pred HHHHHhheEEecCCCcCCCc-CHHHHhhcCC----C-CCCHHHHHHHHHHhCHHHHHHh--cccccccccccC-CCCCCH
Confidence 578899999999999975 9999999873 1 23333322 233444444 477889999875 456999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEec
Q 004537 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (746)
Q Consensus 299 GerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G 378 (746)
|||||++|||||+++|+||+||||||+||++++..|.+.|+++. +++|+|+++|+++ ..+.||+|++|++|++++.|
T Consensus 489 GQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvIiItHrl~--~i~~aD~Iivl~~G~i~e~G 565 (588)
T PRK11174 489 GQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS-RRQTTLMVTHQLE--DLAQWDQIWVMQDGQIVQQG 565 (588)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEecChH--HHHhCCEEEEEeCCeEeecC
Confidence 99999999999999999999999999999999999999999986 4899999999985 35789999999999999999
Q ss_pred CHHHHHH
Q 004537 379 KASEAMA 385 (746)
Q Consensus 379 ~~~~~~~ 385 (746)
+|+|+++
T Consensus 566 ~~~eL~~ 572 (588)
T PRK11174 566 DYAELSQ 572 (588)
T ss_pred CHHHHHh
Confidence 9999874
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-47 Score=380.26 Aligned_cols=223 Identities=28% Similarity=0.489 Sum_probs=194.8
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (746)
.|+++||+..|+ +++++|+|||++|++||++||+||||||||||||+|+|. .+ +.+|+|.+||.++..
T Consensus 3 ~i~~~nl~k~yp-------~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl-~d-~t~G~i~~~g~~i~~~~~ 73 (258)
T COG3638 3 MIEVKNLSKTYP-------GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGL-VD-PTSGEILFNGVQITKLKG 73 (258)
T ss_pred eEEEeeeeeecC-------CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcc-cC-CCcceEEecccchhccch
Confidence 699999999983 467899999999999999999999999999999999984 33 458999999987642
Q ss_pred ----hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCC-----CCcHHHHHHHHHHHHHHcCCCccccccccCccccCC
Q 004537 226 ----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPN-----TLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGV 296 (746)
Q Consensus 226 ----~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~-----~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~L 296 (746)
.+|++|||++|++.|.+.+||.+|+..+...+.+. .+..++.+.++.+.|+++|+.+.+.++. ..|
T Consensus 74 k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra-----~~L 148 (258)
T COG3638 74 KELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRA-----STL 148 (258)
T ss_pred HHHHHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHh-----ccC
Confidence 46789999999999999999999999886443221 1223455677889999999998887654 479
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCChHHHhccCEEEEEeCCeEE
Q 004537 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLL 375 (746)
Q Consensus 297 SGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~-~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv 375 (746)
||||+|||+|||||+.+|+|++.|||+++|||.+++++|+.|+++++ +|.|||++.|+... ..++||||+-|++|+|+
T Consensus 149 SGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdl-A~~Y~~Riigl~~G~iv 227 (258)
T COG3638 149 SGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDL-AKKYADRIIGLKAGRIV 227 (258)
T ss_pred CcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHH-HHHHHhhheEecCCcEE
Confidence 99999999999999999999999999999999999999999999976 49999999999764 67899999999999999
Q ss_pred EecCHHHHHHH
Q 004537 376 YFGKASEAMAY 386 (746)
Q Consensus 376 ~~G~~~~~~~~ 386 (746)
|.|+++|+-+.
T Consensus 228 fDg~~~el~~~ 238 (258)
T COG3638 228 FDGPASELTDE 238 (258)
T ss_pred EeCChhhhhHH
Confidence 99999987554
|
|
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-48 Score=462.72 Aligned_cols=354 Identities=21% Similarity=0.320 Sum_probs=256.8
Q ss_pred HhHHHHHHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeeccccccceecchhchh
Q 004537 9 SLARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSG 88 (746)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 88 (746)
++.++.++..++..+.+.|..++.+|||.++.+..+.++|.++..+......+.....+...........-..+.-+..|
T Consensus 327 ~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~g 406 (711)
T TIGR00958 327 LLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKALAYAGYLWTTSVLGMLIQVLVLYYG 406 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788888899999999999999999999999999999888766655443333333221222222223344556689
Q ss_pred hhhhhhcccccchhhhhcccccChh----hhccCCC------CCCCCCcccccccCCCCCCCCCCC-CCCceEEEEeEEE
Q 004537 89 AALSRASSASLGLSFSFTGFTMPPD----EIADSKP------FSDDDIPEDIEAGTRERPKFQTEP-TLPIYLKFTDVTY 157 (746)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~nvs~ 157 (746)
+.++..+.++.|.+.++..+..... .+..... .+..++.+-++..+...+.....+ .....++|+||+|
T Consensus 407 ~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~I~~~nVsf 486 (711)
T TIGR00958 407 GQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLTGTLAPLNLEGLIEFQDVSF 486 (711)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCCeEEEEEEEE
Confidence 9999999999999888876653221 1110000 000011111111110000000011 1223699999999
Q ss_pred EEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh----hccCcEEE
Q 004537 158 KVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGF 233 (746)
Q Consensus 158 ~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~----~~~~~i~y 233 (746)
+|+. .+++++|+|+|++|+|||.+||+||||||||||+|+|+|. ++ +.+|+|.+||+|+.+ .++++|+|
T Consensus 487 ~Y~~-----~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl-~~-p~~G~I~idg~~i~~~~~~~lr~~i~~ 559 (711)
T TIGR00958 487 SYPN-----RPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNL-YQ-PTGGQVLLDGVPLVQYDHHYLHRQVAL 559 (711)
T ss_pred ECCC-----CCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhc-cC-CCCCEEEECCEEHHhcCHHHHHhhceE
Confidence 9932 1246799999999999999999999999999999999984 44 458999999999853 56889999
Q ss_pred EecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcC-------CCccccccccCccccCCCHHHHHHHHH
Q 004537 234 VTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG-------LERCQDTMIGGSFVRGVSGGERKRVCI 306 (746)
Q Consensus 234 v~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~~~vg~~~~~~LSGGerqRv~I 306 (746)
|+||+.+|+ .|++|||.++.. ..+++ ++.++++..+ +++..||.+|+. ...||||||||++|
T Consensus 560 v~Q~~~lF~-gTIreNI~~g~~-----~~~~e----~i~~al~~a~l~~~i~~lp~GldT~ige~-G~~LSGGQkQRlal 628 (711)
T TIGR00958 560 VGQEPVLFS-GSVRENIAYGLT-----DTPDE----EIMAAAKAANAHDFIMEFPNGYDTEVGEK-GSQLSGGQKQRIAI 628 (711)
T ss_pred EecCccccc-cCHHHHHhcCCC-----CCCHH----HHHHHHHHcCCHHHHHhCCCccCCcccCC-CCcCCHHHHHHHHH
Confidence 999999997 599999998632 12222 2333444433 356788988865 45799999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHHH
Q 004537 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (746)
Q Consensus 307 A~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 385 (746)
||||+++|+|||||||||+||+++++.+.+ .. ..+++|+|+++|+++ ..+.||+|++|++|++++.|+|+|+++
T Consensus 629 ARALl~~p~ILILDEpTSaLD~~te~~i~~-~~--~~~~~TvIiItHrl~--~i~~aD~IivL~~G~ive~Gt~~eL~~ 702 (711)
T TIGR00958 629 ARALVRKPRVLILDEATSALDAECEQLLQE-SR--SRASRTVLLIAHRLS--TVERADQILVLKKGSVVEMGTHKQLME 702 (711)
T ss_pred HHHHhcCCCEEEEEccccccCHHHHHHHHH-hh--ccCCCeEEEEeccHH--HHHhCCEEEEEECCEEEEeeCHHHHHh
Confidence 999999999999999999999999999998 22 235899999999986 357799999999999999999999875
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-47 Score=391.83 Aligned_cols=220 Identities=28% Similarity=0.513 Sum_probs=196.9
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCE---eCCh
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDH---PYSK 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~---~~~~ 225 (746)
+|+++|+++.+ +...+++|||++|+.||++|++|||||||||||++|+|... ++.|.|.+||+ |.++
T Consensus 2 ~i~i~~~~~~~--------~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~--p~~G~I~~~~~~l~D~~~ 71 (345)
T COG1118 2 SIRINNVKKRF--------GAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLET--PDAGRIRLNGRVLFDVSN 71 (345)
T ss_pred ceeehhhhhhc--------ccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCC--CCCceEEECCEeccchhc
Confidence 47788888877 46679999999999999999999999999999999999543 56899999999 5443
Q ss_pred --hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHH
Q 004537 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (746)
Q Consensus 226 --~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqR 303 (746)
...|+||||+|+..+|++|||.|||.|+.+.+ ....++.+.+.+++++|+.+.|++..+ .++.+||||||||
T Consensus 72 ~~~~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~-~~~p~~~~~r~rv~elL~lvqL~~la~-----ryP~QLSGGQrQR 145 (345)
T COG1118 72 LAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVR-KERPSEAEIRARVEELLRLVQLEGLAD-----RYPAQLSGGQRQR 145 (345)
T ss_pred cchhhcceeEEEechhhcccchHHhhhhhccccc-ccCCChhhHHHHHHHHHHHhcccchhh-----cCchhcChHHHHH
Confidence 23578999999999999999999999998766 334567788899999999999987666 5678999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHH
Q 004537 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (746)
Q Consensus 304 v~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~ 382 (746)
|++||||+.+|++|+||||+++||...+.++.+.|+++.++ |.|++++|||+. ++++.||||++|++|+|...|+++|
T Consensus 146 VALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~e-ea~~ladrvvvl~~G~Ieqvg~p~e 224 (345)
T COG1118 146 VALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQE-EALELADRVVVLNQGRIEQVGPPDE 224 (345)
T ss_pred HHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHH-HHHhhcceEEEecCCeeeeeCCHHH
Confidence 99999999999999999999999999999999999999876 999999999965 6899999999999999999999999
Q ss_pred HHH
Q 004537 383 AMA 385 (746)
Q Consensus 383 ~~~ 385 (746)
+.+
T Consensus 225 v~~ 227 (345)
T COG1118 225 VYD 227 (345)
T ss_pred Hhc
Confidence 853
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-48 Score=459.48 Aligned_cols=351 Identities=21% Similarity=0.245 Sum_probs=251.0
Q ss_pred hHHHHHHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeeccccccceecchhchhh
Q 004537 10 LARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSGA 89 (746)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 89 (746)
..++.++.-++..+...|...+.+|+|+++.+....+++.+..........+.....+.........+.-..+.-+..|+
T Consensus 302 ~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~ 381 (686)
T TIGR03797 302 KERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQRIENLLTVFNAVLPVLTSAALFAAAI 381 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666777888899999999999999999888888777665544443321111111111112222223344456888
Q ss_pred hhhhhcccccchhhhhccccc----ChhhhccCCC------CCCCCCcccccccCCCCCCCCCCCCCCceEEEEeEEEEE
Q 004537 90 ALSRASSASLGLSFSFTGFTM----PPDEIADSKP------FSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFTDVTYKV 159 (746)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~nvs~~~ 159 (746)
.++..|.++.|.+..+..+.. |...+..... ....++.+.++..+...............++++||+|+|
T Consensus 382 ~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~~~~~~~~~~I~~~nvsf~Y 461 (686)
T TIGR03797 382 SLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVDEAKTDPGKLSGAIEVDRVTFRY 461 (686)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCcCCCCCCCceEEEEEEEEEc
Confidence 888889999998887765432 2222211100 000111111111110000000001112369999999999
Q ss_pred eeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh----hccCcEEEEe
Q 004537 160 ILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVT 235 (746)
Q Consensus 160 ~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~----~~~~~i~yv~ 235 (746)
+ ..++++|+|+|++|+|||.+||+||||||||||+|+|+|. ++ +.+|+|.+||+++.+ .+|++||||+
T Consensus 462 ~------~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl-~~-p~~G~I~idg~~i~~~~~~~lr~~i~~v~ 533 (686)
T TIGR03797 462 R------PDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGF-ET-PESGSVFYDGQDLAGLDVQAVRRQLGVVL 533 (686)
T ss_pred C------CCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCC-CC-CCCCEEEECCEEcCcCCHHHHHhccEEEc
Confidence 3 2346799999999999999999999999999999999985 44 458999999999863 5789999999
Q ss_pred cCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcC-------CCccccccccCccccCCCHHHHHHHHHHH
Q 004537 236 QDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG-------LERCQDTMIGGSFVRGVSGGERKRVCIGN 308 (746)
Q Consensus 236 Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~~~vg~~~~~~LSGGerqRv~IA~ 308 (746)
||+.+|+. |++|||.++.. .+++ ++.++++..| +++..||.+|+. ...||||||||++|||
T Consensus 534 Q~~~lf~g-TI~eNi~~~~~------~~~e----~i~~al~~a~l~~~i~~lp~G~dt~ige~-G~~LSGGQrQRialAR 601 (686)
T TIGR03797 534 QNGRLMSG-SIFENIAGGAP------LTLD----EAWEAARMAGLAEDIRAMPMGMHTVISEG-GGTLSGGQRQRLLIAR 601 (686)
T ss_pred cCCccCcc-cHHHHHhcCCC------CCHH----HHHHHHHHcCcHHHHHhccccccccccCC-CCCCCHHHHHHHHHHH
Confidence 99999975 99999998632 2222 2333343333 356789999865 4679999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHHH
Q 004537 309 EIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (746)
Q Consensus 309 aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 385 (746)
||+++|+||+||||||+||+.++.++++.|+++ ++|+|+++|+++ ..+.||+|++|++|++++.|+++++++
T Consensus 602 All~~p~iLiLDEpTS~LD~~te~~i~~~L~~~---~~T~IiItHr~~--~i~~~D~Iivl~~G~iv~~G~~~~Ll~ 673 (686)
T TIGR03797 602 ALVRKPRILLFDEATSALDNRTQAIVSESLERL---KVTRIVIAHRLS--TIRNADRIYVLDAGRVVQQGTYDELMA 673 (686)
T ss_pred HHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh---CCeEEEEecChH--HHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999999999999999886 589999999985 357899999999999999999999864
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-47 Score=364.89 Aligned_cols=213 Identities=29% Similarity=0.471 Sum_probs=190.4
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (746)
+|+|+||++.|. ..+++|+||||+|++||++-|+||||||||||||+|.+.. .++.|+|+++|.+++.
T Consensus 1 mI~f~~V~k~Y~-------~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e--~pt~G~i~~~~~dl~~l~~ 71 (223)
T COG2884 1 MIRFENVSKAYP-------GGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEE--RPTRGKILVNGHDLSRLKG 71 (223)
T ss_pred CeeehhhhhhcC-------CCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhh--cCCCceEEECCeecccccc
Confidence 378999999992 2367999999999999999999999999999999999854 3568999999999852
Q ss_pred ----hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHH
Q 004537 226 ----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301 (746)
Q Consensus 226 ----~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGer 301 (746)
.+|++||+|+||..|.++.||+||+.|+.... ..++.+.++++.++|+.+||.+..+. .+.+|||||+
T Consensus 72 ~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~---G~~~~~i~~rV~~~L~~VgL~~k~~~-----lP~~LSGGEQ 143 (223)
T COG2884 72 REIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVI---GKPPREIRRRVSEVLDLVGLKHKARA-----LPSQLSGGEQ 143 (223)
T ss_pred cccchhhheeeeEeeeccccccchHhhhhhhhhhcc---CCCHHHHHHHHHHHHHHhccchhhhc-----CccccCchHH
Confidence 47899999999999999999999999987654 35677888999999999999988775 4678999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecC
Q 004537 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (746)
Q Consensus 302 qRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (746)
|||+||||++.+|++|+.||||.+|||..+.+|++++.++.+.|.||++.|||.. -+-++-.+++.|++|+++....
T Consensus 144 QRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~-lv~~~~~rvl~l~~Grl~~d~~ 220 (223)
T COG2884 144 QRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLE-LVNRMRHRVLALEDGRLVRDES 220 (223)
T ss_pred HHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHH-HHHhccCcEEEEeCCEEEeccc
Confidence 9999999999999999999999999999999999999999999999999999953 3555667999999999987654
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-47 Score=371.13 Aligned_cols=233 Identities=24% Similarity=0.437 Sum_probs=198.3
Q ss_pred ceEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCC----CCccEEEECCEeC
Q 004537 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP----TVGGSITYNDHPY 223 (746)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~----~~~G~I~~~G~~~ 223 (746)
..++++||++.| +++.+|+|||+.|++++++|||||||||||||||++. |..+. ..+|+|.++|+++
T Consensus 6 ~~~~~~~l~~yY--------g~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lN-Rmndl~~~~r~~G~v~~~g~ni 76 (253)
T COG1117 6 PAIEVRDLNLYY--------GDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLN-RMNDLIPGARVEGEVLLDGKNI 76 (253)
T ss_pred ceeEecceeEEE--------CchhhhccCceeccCCceEEEECCCCcCHHHHHHHHH-hhcccCcCceEEEEEEECCeec
Confidence 358999999998 5788999999999999999999999999999999998 44432 2479999999998
Q ss_pred Ch------hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCC
Q 004537 224 SK------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVS 297 (746)
Q Consensus 224 ~~------~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS 297 (746)
.. ++|++||+|||.|.-|| +|++||+.|+.++.. ..+++.++.|+..|+...|.+.-..++. ....+||
T Consensus 77 ~~~~~d~~~lRr~vGMVFQkPnPFp-~SIydNVayG~r~~g---~~~~~ldeiVe~sLk~AaLWdEVKDrL~-~sa~~LS 151 (253)
T COG1117 77 YDPKVDVVELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHG---IKDKELDEIVESSLKKAALWDEVKDRLH-KSALGLS 151 (253)
T ss_pred cCCCCCHHHHHHHheeeccCCCCCC-chHHHHHHHhHHhhc---cchHHHHHHHHHHHHHhHhHHHhHHHhh-CCccCCC
Confidence 53 57999999999999999 899999999987653 2236677888999988887643332332 3346799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEe
Q 004537 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (746)
Q Consensus 298 GGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~ 377 (746)
|||+||++|||||+.+|+||+||||||+|||.+..+|-+++.+|++ .-|||++||.+. ...+..|+..++..|+++++
T Consensus 152 GGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~-~yTIviVTHnmq-QAaRvSD~taFf~~G~LvE~ 229 (253)
T COG1117 152 GGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKK-KYTIVIVTHNMQ-QAARVSDYTAFFYLGELVEF 229 (253)
T ss_pred hhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHh-ccEEEEEeCCHH-HHHHHhHhhhhhcccEEEEE
Confidence 9999999999999999999999999999999999999999999985 789999999976 46789999999999999999
Q ss_pred cCHHHHHHHHHhcCCCCCCCCChHHHH
Q 004537 378 GKASEAMAYFSSIGCSPQIAMNPAEFL 404 (746)
Q Consensus 378 G~~~~~~~~f~~~G~~~~~~~npad~~ 404 (746)
|+.+++. ..|.+.-..||+
T Consensus 230 g~T~~iF--------~~P~~~~TedYi 248 (253)
T COG1117 230 GPTDKIF--------TNPKHKRTEDYI 248 (253)
T ss_pred cCHHhhh--------cCccHHHHHHHh
Confidence 9998873 456665566665
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-47 Score=368.29 Aligned_cols=219 Identities=28% Similarity=0.463 Sum_probs=199.3
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (746)
+|++.+++++|. ...++++||||+++.||+++|+|||||||||+|++|++.+. |++|.|++||.+..+
T Consensus 1 Ml~v~~l~K~y~-------~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~--P~~G~v~idg~d~~~~p~ 71 (245)
T COG4555 1 MLEVTDLTKSYG-------SKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLI--PDSGKVTIDGVDTVRDPS 71 (245)
T ss_pred Ceeeeehhhhcc-------CHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhcc--CCCceEEEeecccccChH
Confidence 378899999882 23359999999999999999999999999999999998664 458999999998753
Q ss_pred hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHH
Q 004537 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (746)
Q Consensus 226 ~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~ 305 (746)
..|++||.++.+..++..||++|||.|.+++. .+.+.+.+++++++.+.|+|.++.|+++| ++|.|+||||+
T Consensus 72 ~vrr~IGVl~~e~glY~RlT~rEnl~~Fa~L~---~l~~~~~kari~~l~k~l~l~~~~~rRv~-----~~S~G~kqkV~ 143 (245)
T COG4555 72 FVRRKIGVLFGERGLYARLTARENLKYFARLN---GLSRKEIKARIAELSKRLQLLEYLDRRVG-----EFSTGMKQKVA 143 (245)
T ss_pred HHhhhcceecCCcChhhhhhHHHHHHHHHHHh---hhhhhHHHHHHHHHHHHhChHHHHHHHHh-----hhchhhHHHHH
Confidence 46899999998889999999999999998875 46778888999999999999999999876 79999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHHH
Q 004537 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (746)
Q Consensus 306 IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 385 (746)
|||||++||++++|||||||||..+...+.+.++++.++|++||++||.+. ++..+||+|++|++|++++.|+.+++..
T Consensus 144 iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~-EvealCDrvivlh~Gevv~~gs~~~l~~ 222 (245)
T COG4555 144 IARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQ-EVEALCDRVIVLHKGEVVLEGSIEALDA 222 (245)
T ss_pred HHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHH-HHHHhhheEEEEecCcEEEcCCHHHHHH
Confidence 999999999999999999999999999999999999988999999999964 6888999999999999999999988764
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-45 Score=397.98 Aligned_cols=219 Identities=27% Similarity=0.431 Sum_probs=194.4
Q ss_pred ceEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh--
Q 004537 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (746)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (746)
..++++||+++| +++.+|+||||+|++||+++|+||||||||||+++|+|.+. +++|+|.++|.++..
T Consensus 6 ~~i~i~~l~k~~--------~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~--p~~G~v~i~G~~~~~~~ 75 (306)
T PRK13537 6 APIDFRNVEKRY--------GDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTH--PDAGSISLCGEPVPSRA 75 (306)
T ss_pred ceEEEEeEEEEE--------CCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEecccch
Confidence 369999999998 34679999999999999999999999999999999999543 468999999998753
Q ss_pred -hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHH
Q 004537 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (746)
Q Consensus 226 -~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv 304 (746)
..+++||||+|++.+++.+||+||+.|.+..+ ..+..+..++++++++.++|.+..++.+ ++||||||||+
T Consensus 76 ~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl 147 (306)
T PRK13537 76 RHARQRVGVVPQFDNLDPDFTVRENLLVFGRYF---GLSAAAARALVPPLLEFAKLENKADAKV-----GELSGGMKRRL 147 (306)
T ss_pred HHHHhcEEEEeccCcCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchHhcCch-----hhCCHHHHHHH
Confidence 35678999999999999999999999876543 2334445567889999999998888765 58999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHH
Q 004537 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (746)
Q Consensus 305 ~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (746)
+||+||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. ++.+.||+|++|++|++++.|+++++.
T Consensus 148 ~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~-e~~~~~d~i~il~~G~i~~~g~~~~l~ 226 (306)
T PRK13537 148 TLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFME-EAERLCDRLCVIEEGRKIAEGAPHALI 226 (306)
T ss_pred HHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999999999999999999999999877999999999975 578899999999999999999999886
Q ss_pred H
Q 004537 385 A 385 (746)
Q Consensus 385 ~ 385 (746)
.
T Consensus 227 ~ 227 (306)
T PRK13537 227 E 227 (306)
T ss_pred h
Confidence 5
|
|
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-48 Score=420.71 Aligned_cols=340 Identities=26% Similarity=0.390 Sum_probs=236.1
Q ss_pred HHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeecccccccee----cchhchhhhhhhh
Q 004537 19 VETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLE----LDEVSSGAALSRA 94 (746)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~g~~~~~~ 94 (746)
-.+...|-+++.+-++||.|+.+.-|.+||...+.+--+.+.+-...-+- .+..|-.+= .--...|.+=...
T Consensus 211 n~as~~~~dsL~Nye~VKsfNnE~~Ea~~y~~~l~~~~~~~~~~~~sl~~----lnfgQ~~iFsv~~~~im~l~~~gi~~ 286 (591)
T KOG0057|consen 211 NSASRRAYDSLINYEIVKSFNNEEYEASRYDGSLKTYERAGLKYSSSLAF----LNFGQKAIFSVALTFIMVLGSNGIAA 286 (591)
T ss_pred hHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHhhhhHHhHHHH----HHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 34455788899999999999999999999998887655544321111111 112221110 0011233332344
Q ss_pred cccccchhhhhcccc----cChhhhccC-----------C-CCCCCCCcccccccCCCCCCCCCCCCCCceEEEEeEEEE
Q 004537 95 SSASLGLSFSFTGFT----MPPDEIADS-----------K-PFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFTDVTYK 158 (746)
Q Consensus 95 ~~~~~~~~~~~~~~~----~~~~~~~~~-----------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~nvs~~ 158 (746)
|.+..|.+.....+. +|...+... . -+...+...++..+. .+ .. ..+..|+|+||+++
T Consensus 287 ~~mtvgdlv~~n~l~~qL~~~l~~Lg~vyr~~~q~l~Dm~~~~~l~~~~~~i~~~~--~~---i~-~~~~~I~F~dV~f~ 360 (591)
T KOG0057|consen 287 GKMTVGDLVMVNSLLFQLSLPLNFLGSVYRELRQALTDMRTLFILLEVDEDIQEAA--LP---IE-LFGGSIEFDDVHFS 360 (591)
T ss_pred ccccccchhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHhhhhhhhhhhhcc--CC---cc-cCCCcEEEEeeEEE
Confidence 444444443333221 221111100 0 000001111111110 00 01 12335999999999
Q ss_pred EeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh----hccCcEEEE
Q 004537 159 VILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFV 234 (746)
Q Consensus 159 ~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~----~~~~~i~yv 234 (746)
|. ++++||+++||+|++||.+||+|+|||||||++|+|.+ +.+ .+|+|++||+++.+ .+|+.||||
T Consensus 361 y~-------~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~Llr-F~d--~sG~I~IdG~dik~~~~~SlR~~Ig~V 430 (591)
T KOG0057|consen 361 YG-------PKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLR-FFD--YSGSILIDGQDIKEVSLESLRQSIGVV 430 (591)
T ss_pred eC-------CCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHH-Hhc--cCCcEEECCeeHhhhChHHhhhheeEe
Confidence 92 34559999999999999999999999999999999995 554 58999999999853 578999999
Q ss_pred ecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHHHHHhhCC
Q 004537 235 TQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINP 314 (746)
Q Consensus 235 ~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p 314 (746)
|||..||.+ ||.+||.|+......+.+-+..++...++.+.. +++.++|.+|++. ..|||||||||+||||+++||
T Consensus 431 PQd~~LFnd-TIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~--l~~GY~T~VGerG-~~LSGGekQrvslaRa~lKda 506 (591)
T KOG0057|consen 431 PQDSVLFND-TILYNIKYGNPSASDEEVVEACKRAGLHDVISR--LPDGYQTLVGERG-LMLSGGEKQRVSLARAFLKDA 506 (591)
T ss_pred CCcccccch-hHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHh--ccccchhhHhhcc-cccccchHHHHHHHHHHhcCC
Confidence 999999975 999999998532211111112222234445544 4788999999765 459999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHHH
Q 004537 315 SLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (746)
Q Consensus 315 ~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 385 (746)
+|+++|||||+||++++.++++.+.+.. .|+|+|++.|+.+ ..+.||+|++|++|++.+.|+|+|+++
T Consensus 507 ~Il~~DEaTS~LD~~TE~~i~~~i~~~~-~~rTvI~IvH~l~--ll~~~DkI~~l~nG~v~e~gth~ell~ 574 (591)
T KOG0057|consen 507 PILLLDEATSALDSETEREILDMIMDVM-SGRTVIMIVHRLD--LLKDFDKIIVLDNGTVKEYGTHSELLA 574 (591)
T ss_pred CeEEecCcccccchhhHHHHHHHHHHhc-CCCeEEEEEecch--hHhcCCEEEEEECCeeEEeccHHHHhh
Confidence 9999999999999999999999999954 4999999999976 468899999999999999999999987
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-45 Score=400.64 Aligned_cols=220 Identities=25% Similarity=0.418 Sum_probs=192.4
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh----
Q 004537 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (746)
|+++||+++|..+ ...+.+|+||||+|++||+++|+||||||||||+|+|+|.. ++++|+|.++|+++..
T Consensus 2 I~~~~lsk~y~~~----~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~--~p~~G~I~i~G~~i~~~~~~ 75 (343)
T TIGR02314 2 IKLSNITKVFHQG----TKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLE--RPTSGSVIVDGQDLTTLSNS 75 (343)
T ss_pred EEEEEEEEEECCC----CcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC--CCCceEEEECCEECCcCCHH
Confidence 7899999998311 12357999999999999999999999999999999999954 3568999999998752
Q ss_pred ---hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHH
Q 004537 226 ---SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (746)
Q Consensus 226 ---~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerq 302 (746)
..+++|+|++|++.+++.+||+||+.++.... ..++++.++++.++++.+||.+..|. ++.+|||||||
T Consensus 76 ~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~v~e~l~~vgL~~~~~~-----~~~~LSgGqkQ 147 (343)
T TIGR02314 76 ELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEIKRKVTELLALVGLGDKHDS-----YPSNLSGGQKQ 147 (343)
T ss_pred HHHHHhcCEEEEECCccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhC-----ChhhCCHHHHH
Confidence 24678999999999999999999999976532 23456667789999999999887775 45689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHH
Q 004537 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 381 (746)
Q Consensus 303 Rv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 381 (746)
||+|||||+.+|++|+||||||+||+.++..+++.|++++++ |.|||++||++. .+.+.||+|++|++|++++.|+++
T Consensus 148 RV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~-~v~~~~d~v~vl~~G~iv~~g~~~ 226 (343)
T TIGR02314 148 RVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMD-VVKRICDCVAVISNGELIEQGTVS 226 (343)
T ss_pred HHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHH
Confidence 999999999999999999999999999999999999999875 999999999975 577899999999999999999998
Q ss_pred HHH
Q 004537 382 EAM 384 (746)
Q Consensus 382 ~~~ 384 (746)
++.
T Consensus 227 ~v~ 229 (343)
T TIGR02314 227 EIF 229 (343)
T ss_pred HHH
Confidence 874
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-47 Score=453.41 Aligned_cols=358 Identities=23% Similarity=0.352 Sum_probs=255.1
Q ss_pred HhHHHHHHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeeccccccceecchhchh
Q 004537 9 SLARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSG 88 (746)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 88 (746)
+..++..+..++..+...|...+.+|+|+++.+....+++.+..........+.....+.........+.-..+.-+..|
T Consensus 311 ~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~g 390 (694)
T TIGR03375 311 RLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFLSNLATNFAQFIQQLVSVAIVVVG 390 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455567778888899999999999999999988888887766554333222111111110111111222234445688
Q ss_pred hhhhhhcccccchhhhhccccc----ChhhhccCCC------CCCCCCcccccccCCCCC--CCCCCCCCCceEEEEeEE
Q 004537 89 AALSRASSASLGLSFSFTGFTM----PPDEIADSKP------FSDDDIPEDIEAGTRERP--KFQTEPTLPIYLKFTDVT 156 (746)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~------~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~nvs 156 (746)
+.++..|.++.|.+..|..+.. |...+..... ....++.+.++..+...+ .....+.....++|+||+
T Consensus 391 ~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~~~~~~~~~~~I~~~~vs 470 (694)
T TIGR03375 391 VYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVERPEGTRFLHRPRLQGEIEFRNVS 470 (694)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCccceEEEEEEE
Confidence 8888889999998888765442 2222211000 000111111111110000 000011122369999999
Q ss_pred EEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh----hccCcEE
Q 004537 157 YKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIG 232 (746)
Q Consensus 157 ~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~----~~~~~i~ 232 (746)
|+|+ ..++++|+|+|++|+|||.+||+||||||||||+|+|+|. ++ +.+|+|.+||+|+.+ .+|++|+
T Consensus 471 f~Y~------~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl-~~-p~~G~I~idg~~l~~~~~~~lr~~i~ 542 (694)
T TIGR03375 471 FAYP------GQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGL-YQ-PTEGSVLLDGVDIRQIDPADLRRNIG 542 (694)
T ss_pred EEeC------CCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcC-CC-CCCceEEECCEEhhhCCHHHHHhccE
Confidence 9993 2346799999999999999999999999999999999985 44 458999999999853 5789999
Q ss_pred EEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHH-----HHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHH
Q 004537 233 FVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEK-----RAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (746)
Q Consensus 233 yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~-----~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA 307 (746)
||+|++.+|+. |++|||.++.. ..++++..+ .+++.++. +++..||.+|+. ...||||||||++||
T Consensus 543 ~v~Q~~~lf~~-TI~eNi~~~~~-----~~~~~~i~~a~~~~~l~~~i~~--lp~gl~T~i~e~-G~~LSgGQrQRlalA 613 (694)
T TIGR03375 543 YVPQDPRLFYG-TLRDNIALGAP-----YADDEEILRAAELAGVTEFVRR--HPDGLDMQIGER-GRSLSGGQRQAVALA 613 (694)
T ss_pred EECCChhhhhh-hHHHHHhCCCC-----CCCHHHHHHHHHHcChHHHHHh--CcccccceecCC-CCCCCHHHHHHHHHH
Confidence 99999999975 99999998631 123332222 23333443 467789999865 456999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHHHH
Q 004537 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAY 386 (746)
Q Consensus 308 ~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~~ 386 (746)
|||+++|++++||||||+||+.++.++.+.|+++.+ ++|+|++||+++. .+.||+|++|++|++++.|+|+|+++.
T Consensus 614 Rall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~-~~T~iiItHrl~~--~~~~D~iivl~~G~i~e~G~~~eLl~~ 689 (694)
T TIGR03375 614 RALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLA-GKTLVLVTHRTSL--LDLVDRIIVMDNGRIVADGPKDQVLEA 689 (694)
T ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHHH--HHhCCEEEEEeCCEEEeeCCHHHHHHH
Confidence 999999999999999999999999999999999865 8999999999863 578999999999999999999998763
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-47 Score=455.07 Aligned_cols=354 Identities=22% Similarity=0.283 Sum_probs=250.3
Q ss_pred hHHHHHHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeeccccccceecchhchhh
Q 004537 10 LARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSGA 89 (746)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 89 (746)
..++.+++-++..+...|...+.+|+|+++.+....+++.+...+......+.....+.........+.-..+.-+..|+
T Consensus 320 ~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~ 399 (710)
T TIGR03796 320 ANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELGVLTQILGVLPTLLTSLNSALILVVGG 399 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666678888899999999999999999988888876665544433221111111101111122222344456888
Q ss_pred hhhhhcccccchhhhhccccc----ChhhhccCCC------CCCCCCcccccccCCCC-CC-------CCCCCCCCceEE
Q 004537 90 ALSRASSASLGLSFSFTGFTM----PPDEIADSKP------FSDDDIPEDIEAGTRER-PK-------FQTEPTLPIYLK 151 (746)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~------~~~~~~~~~~~~~~~~~-~~-------~~~~~~~~~~l~ 151 (746)
.++..|.++.|.+..+..+.. |...+..... ....++.+.+...+... .. ....+.....|+
T Consensus 400 ~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~~~~~~~~~~~~~~~~~I~ 479 (710)
T TIGR03796 400 LRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLLEEEEAPAAGSEPSPRLSGYVE 479 (710)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccccccccccccCCCCCCeEE
Confidence 888889999998888775543 2222211100 00001111111100000 00 000011224699
Q ss_pred EEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh----hc
Q 004537 152 FTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SL 227 (746)
Q Consensus 152 ~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~----~~ 227 (746)
++||+|+|+ ..++++|+|+|++|++||.+||+||||||||||+|+|+|. ++ +.+|+|.+||.++.+ .+
T Consensus 480 ~~~vsf~y~------~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl-~~-p~~G~I~idg~~i~~~~~~~l 551 (710)
T TIGR03796 480 LRNITFGYS------PLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGL-YQ-PWSGEILFDGIPREEIPREVL 551 (710)
T ss_pred EEEEEEecC------CCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcC-CC-CCCcEEEECCEeHHHCCHHHH
Confidence 999999993 2346799999999999999999999999999999999985 44 458999999999853 57
Q ss_pred cCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHH-----HHHHHHHHcCCCccccccccCccccCCCHHHHH
Q 004537 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEK-----RAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (746)
Q Consensus 228 ~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~-----~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerq 302 (746)
|++|+||+|++.+|+ .|++|||.++. + ..++++..+ .+++.++. +++..||.+|+. ...|||||||
T Consensus 552 r~~i~~v~Q~~~lf~-gTi~eNi~l~~----~-~~~~~~i~~al~~~~l~~~i~~--lp~gl~t~i~e~-G~~LSGGQrQ 622 (710)
T TIGR03796 552 ANSVAMVDQDIFLFE-GTVRDNLTLWD----P-TIPDADLVRACKDAAIHDVITS--RPGGYDAELAEG-GANLSGGQRQ 622 (710)
T ss_pred HhheeEEecCChhhh-ccHHHHhhCCC----C-CCCHHHHHHHHHHhCCHHHHHh--CcCcccceeccC-CCCCCHHHHH
Confidence 899999999999997 59999998752 1 123322221 12233333 466788999865 4679999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHH
Q 004537 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (746)
Q Consensus 303 Rv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~ 382 (746)
|++|||||+++|+|||||||||+||+.++.++++.|++ .++|+|++||+++. .+.||+|++|++|++++.|++++
T Consensus 623 RiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~---~~~T~IiitHrl~~--i~~~D~Iivl~~G~i~~~G~~~~ 697 (710)
T TIGR03796 623 RLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR---RGCTCIIVAHRLST--IRDCDEIIVLERGKVVQRGTHEE 697 (710)
T ss_pred HHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh---cCCEEEEEecCHHH--HHhCCEEEEEeCCEEEEecCHHH
Confidence 99999999999999999999999999999999999986 48999999999863 57799999999999999999999
Q ss_pred HHH
Q 004537 383 AMA 385 (746)
Q Consensus 383 ~~~ 385 (746)
+++
T Consensus 698 Ll~ 700 (710)
T TIGR03796 698 LWA 700 (710)
T ss_pred HHH
Confidence 875
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-47 Score=443.96 Aligned_cols=358 Identities=20% Similarity=0.277 Sum_probs=250.3
Q ss_pred HhHHHHHHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeeccccccceecchhchh
Q 004537 9 SLARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSG 88 (746)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 88 (746)
+..++.+++.++..+...|.....+++|+++.+....+++.+..........+..............+..-..+.-+..|
T Consensus 191 ~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g 270 (582)
T PRK11176 191 NISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQGMKMVSASSISDPIIQLIASLALAFVLYAA 270 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555677778888899999999999999999988888888766654443322111111111111111111223334567
Q ss_pred hhhhhhcccccchhhhhcccc----cChhhhccCCC------CCCCCCcccccccCCCCCCCCCCCCCCceEEEEeEEEE
Q 004537 89 AALSRASSASLGLSFSFTGFT----MPPDEIADSKP------FSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFTDVTYK 158 (746)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~nvs~~ 158 (746)
+..+..+.++.|....+..+. .|...+..... ....++.+.+...+.........+..+..++++||+|+
T Consensus 271 ~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~i~~~~vsf~ 350 (582)
T PRK11176 271 SFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQEKDEGKRVIERAKGDIEFRNVTFT 350 (582)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCCcCCCCCCCeEEEEEEEEe
Confidence 777777888888875544332 23332211100 00011111111010000000001111236999999999
Q ss_pred EeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh----hccCcEEEE
Q 004537 159 VILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFV 234 (746)
Q Consensus 159 ~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~----~~~~~i~yv 234 (746)
|+ .+++++|+|+|++|++||.+||+||||||||||+|+|+|.. + +.+|+|.+||+++++ .++++|+||
T Consensus 351 y~------~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~-~-p~~G~I~i~g~~i~~~~~~~~~~~i~~v 422 (582)
T PRK11176 351 YP------GKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFY-D-IDEGEILLDGHDLRDYTLASLRNQVALV 422 (582)
T ss_pred cC------CCCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhcc-C-CCCceEEECCEEhhhcCHHHHHhhceEE
Confidence 83 23467999999999999999999999999999999999853 3 458999999999853 568899999
Q ss_pred ecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHH-----HHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHHHH
Q 004537 235 TQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEK-----RAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNE 309 (746)
Q Consensus 235 ~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~-----~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~a 309 (746)
+||+.+|+ .|++|||.++. ++..++++..+ ..++.++. |++..||.+|+. ...||||||||++||||
T Consensus 423 ~Q~~~lf~-~Ti~~Ni~~~~----~~~~~~~~i~~al~~~~l~~~i~~--lp~Gldt~ig~~-g~~LSGGqrQRi~LARa 494 (582)
T PRK11176 423 SQNVHLFN-DTIANNIAYAR----TEQYSREQIEEAARMAYAMDFINK--MDNGLDTVIGEN-GVLLSGGQRQRIAIARA 494 (582)
T ss_pred ccCceeec-chHHHHHhcCC----CCCCCHHHHHHHHHHhCcHHHHHh--cccccCceeCCC-CCcCCHHHHHHHHHHHH
Confidence 99999997 59999999862 22223332222 12233333 467789999865 45799999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHHH
Q 004537 310 IIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (746)
Q Consensus 310 L~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 385 (746)
|+++|+||+||||||+||+.++..+++.|+++.+ ++|+|++||+++ ..+.||+|++|++|++++.|+++++++
T Consensus 495 ll~~~~ililDEptsaLD~~t~~~i~~~l~~~~~-~~tvI~VtHr~~--~~~~~D~Ii~l~~g~i~e~g~~~~l~~ 567 (582)
T PRK11176 495 LLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLS--TIEKADEILVVEDGEIVERGTHAELLA 567 (582)
T ss_pred HHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC-CCEEEEEecchH--HHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 9999999999999999999999999999999854 799999999985 467899999999999999999999874
|
|
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-47 Score=454.58 Aligned_cols=356 Identities=21% Similarity=0.282 Sum_probs=254.3
Q ss_pred HhHHHHHHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeeccccccceecchhchh
Q 004537 9 SLARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSG 88 (746)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 88 (746)
++.++.+++-++..+...|.+.+.+|+|+++.+....+++.++.........+.....+.....+...+.-..+.-+..|
T Consensus 321 ~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~il~~g 400 (708)
T TIGR01193 321 KLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQGQQAIKAVTKLILNVVILWTG 400 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556677778888889999999999999999988888877766544443322111111110111111222234455689
Q ss_pred hhhhhhcccccchhhhhccccc----ChhhhccCCC------CCCCCCcccccccCCCC-C-CCCCCCCCCceEEEEeEE
Q 004537 89 AALSRASSASLGLSFSFTGFTM----PPDEIADSKP------FSDDDIPEDIEAGTRER-P-KFQTEPTLPIYLKFTDVT 156 (746)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~------~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~l~~~nvs 156 (746)
+.++..|.++.|.+..|..+.. |...+..... ....++.+.+....... . .....+.....++++||+
T Consensus 401 ~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~~~~~~~~~~~~I~~~~vs 480 (708)
T TIGR01193 401 AYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSEFINKKKRTELNNLNGDIVINDVS 480 (708)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccccccCCCCCCCcEEEEEEE
Confidence 9999999999999888876543 3222211100 00011111111110000 0 000111122369999999
Q ss_pred EEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh----hccCcEE
Q 004537 157 YKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIG 232 (746)
Q Consensus 157 ~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~----~~~~~i~ 232 (746)
|+|. .++++|+|+|++|++||.+||+||||||||||+|+|+|. ++ +.+|+|++||+++.+ .+|++|+
T Consensus 481 f~y~-------~~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl-~~-p~~G~I~idg~~i~~~~~~~lr~~i~ 551 (708)
T TIGR01193 481 YSYG-------YGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGF-FQ-ARSGEILLNGFSLKDIDRHTLRQFIN 551 (708)
T ss_pred EEcC-------CCCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhcc-CC-CCCcEEEECCEEHHHcCHHHHHHheE
Confidence 9992 235799999999999999999999999999999999984 44 458999999999753 5788999
Q ss_pred EEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHH-----HHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHH
Q 004537 233 FVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKE-----KRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (746)
Q Consensus 233 yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~-----~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA 307 (746)
||+|++.+|+. |++|||.++.. + ..++++.. ..+++.++. +++..||.+|+. ...||||||||++||
T Consensus 552 ~v~Q~~~lf~g-TI~eNi~l~~~---~-~~~~~~i~~a~~~a~l~~~i~~--lp~gldt~i~e~-G~~LSgGQrQRialA 623 (708)
T TIGR01193 552 YLPQEPYIFSG-SILENLLLGAK---E-NVSQDEIWAACEIAEIKDDIEN--MPLGYQTELSEE-GSSISGGQKQRIALA 623 (708)
T ss_pred EEecCceehhH-HHHHHHhccCC---C-CCCHHHHHHHHHHhCCHHHHHh--cccccCcEecCC-CCCCCHHHHHHHHHH
Confidence 99999999975 99999998631 1 12322221 223334443 466789999864 457999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHHH
Q 004537 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (746)
Q Consensus 308 ~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 385 (746)
|||+++|+||+||||||+||+.++..+++.|+++ +|+|+|+++|+++ ..+.||+|++|++|++++.|+++++++
T Consensus 624 Rall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~--~~~T~IiitHr~~--~~~~~D~i~~l~~G~i~~~G~~~~L~~ 697 (708)
T TIGR01193 624 RALLTDSKVLILDESTSNLDTITEKKIVNNLLNL--QDKTIIFVAHRLS--VAKQSDKIIVLDHGKIIEQGSHDELLD 697 (708)
T ss_pred HHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh--cCCEEEEEecchH--HHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999999999985 4899999999986 357899999999999999999999875
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-47 Score=478.72 Aligned_cols=354 Identities=20% Similarity=0.263 Sum_probs=254.1
Q ss_pred HHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeeccccccceecchhchhhhhhhh
Q 004537 15 SDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSGAALSRA 94 (746)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 94 (746)
++.+++.++.++|.+++.+|||+|+.+....++|.+..........+.....+.....+...+.-..+.-++.|+.++..
T Consensus 1015 ~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~lv~~ 1094 (1466)
T PTZ00265 1015 DEIFKDPSFLIQEAFYNMNTVIIYGLEDYFCNLIEKAIDYSNKGQKRKTLVNSMLWGFSQSAQLFINSFAYWFGSFLIRR 1094 (1466)
T ss_pred HHHHHHHHHHHHHHHhcHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34467788899999999999999999999999998877655443332222222221222233333455667799999999
Q ss_pred cccccchhhhhccccc----Chhhhcc-------C-----CCCCCCCCcccccccCCCCCCCCCCCCCCceEEEEeEEEE
Q 004537 95 SSASLGLSFSFTGFTM----PPDEIAD-------S-----KPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFTDVTYK 158 (746)
Q Consensus 95 ~~~~~~~~~~~~~~~~----~~~~~~~-------~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~nvs~~ 158 (746)
+.++.|.+..+..+.. +...+.. . +.+...+.++.++............+.....|+|+||+|+
T Consensus 1095 g~it~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~a~~a~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~ 1174 (1466)
T PTZ00265 1095 GTILVDDFMKSLFTFLFTGSYAGKLMSLKGDSENAKLSFEKYYPLIIRKSNIDVRDNGGIRIKNKNDIKGKIEIMDVNFR 1174 (1466)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCcCCCCCCcccccccCCCCCceEEEEEEEEE
Confidence 9999987666432211 1111100 0 0000111111010000000000000111236999999999
Q ss_pred EeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCC---------------------------
Q 004537 159 VILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPT--------------------------- 211 (746)
Q Consensus 159 ~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~--------------------------- 211 (746)
|+. +++++||+|+||+|+||+.+||+||||||||||+++|.| +++|.
T Consensus 1175 Y~~-----~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r-~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1248 (1466)
T PTZ00265 1175 YIS-----RPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMR-FYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQ 1248 (1466)
T ss_pred CCC-----CCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHH-hCCCcccccccccccccccccccccccccccc
Confidence 942 124579999999999999999999999999999999996 55552
Q ss_pred --------------------------CccEEEECCEeCC----hhccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCC
Q 004537 212 --------------------------VGGSITYNDHPYS----KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNT 261 (746)
Q Consensus 212 --------------------------~~G~I~~~G~~~~----~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~ 261 (746)
.+|+|++||+++. +.+|++||||+|++.||+ .|++|||.|+.. +
T Consensus 1249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~-gTIreNI~~g~~-----~ 1322 (1466)
T PTZ00265 1249 NVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFN-MSIYENIKFGKE-----D 1322 (1466)
T ss_pred ccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCcccc-ccHHHHHhcCCC-----C
Confidence 5899999999985 357899999999999997 699999999732 2
Q ss_pred CcHHHHH-----HHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH
Q 004537 262 LTKQQKE-----KRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQ 336 (746)
Q Consensus 262 ~~~~~~~-----~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~ 336 (746)
.+.++.+ +.+++.++. |++.+||.+|+. ...||||||||++|||||+++|+|||||||||+||+.+++.|.+
T Consensus 1323 at~eeI~~A~k~A~l~~fI~~--LP~GydT~VGe~-G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~ 1399 (1466)
T PTZ00265 1323 ATREDVKRACKFAAIDEFIES--LPNKYDTNVGPY-GKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEK 1399 (1466)
T ss_pred CCHHHHHHHHHHcCCHHHHHh--CccccCCccCCC-CCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHH
Confidence 2333322 233445543 588999999964 45699999999999999999999999999999999999999999
Q ss_pred HHHHHH-HCCCEEEEEecCCChHHHhccCEEEEEeC----CeEE-EecCHHHHHH
Q 004537 337 MLQDIA-EAGKTVVTTIHQPSSRLFHKFDKLILLGK----GSLL-YFGKASEAMA 385 (746)
Q Consensus 337 ~L~~l~-~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~----G~iv-~~G~~~~~~~ 385 (746)
.|+++. .+++|+|+|+|+++. .+.||+|++|++ |+++ +.|+|+|+++
T Consensus 1400 ~L~~~~~~~~~TvIiIaHRlst--i~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~ 1452 (1466)
T PTZ00265 1400 TIVDIKDKADKTIITIAHRIAS--IKRSDKIVVFNNPDRTGSFVQAHGTHEELLS 1452 (1466)
T ss_pred HHHHHhccCCCEEEEEechHHH--HHhCCEEEEEeCCCCCCCEEEEecCHHHHHh
Confidence 999986 358999999999864 578999999999 9955 8999999974
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-45 Score=400.11 Aligned_cols=218 Identities=27% Similarity=0.503 Sum_probs=195.1
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh--h
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--S 226 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--~ 226 (746)
.|+++||+++| +++.+|+|+||++++||+++|+|||||||||||++|+|.. ++++|+|.+||+++.. .
T Consensus 4 ~l~~~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~--~p~~G~I~i~g~~~~~~~~ 73 (353)
T TIGR03265 4 YLSIDNIRKRF--------GAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLE--RQTAGTIYQGGRDITRLPP 73 (353)
T ss_pred EEEEEEEEEEe--------CCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCC--CCCceEEEECCEECCCCCH
Confidence 58999999998 3457999999999999999999999999999999999954 3568999999998753 3
Q ss_pred ccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHH
Q 004537 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (746)
Q Consensus 227 ~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~I 306 (746)
.++.+|||+|++.+||++||+||+.|+...+ ..++.+.+++++++++.++|++..+. .+++|||||||||+|
T Consensus 74 ~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~l~L~~~~~~-----~~~~LSgGq~QRvaL 145 (353)
T TIGR03265 74 QKRDYGIVFQSYALFPNLTVADNIAYGLKNR---GMGRAEVAERVAELLDLVGLPGSERK-----YPGQLSGGQQQRVAL 145 (353)
T ss_pred HHCCEEEEeCCcccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCCchhhC-----ChhhCCHHHHHHHHH
Confidence 4678999999999999999999999986543 24566677889999999999987775 457899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHHH
Q 004537 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (746)
Q Consensus 307 A~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 385 (746)
||||+.+|++|||||||++||+.++.++.+.|+++.++ |.|+|++||++. ++..+||+|++|++|++++.|+++++.+
T Consensus 146 ARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~-ea~~l~d~i~vl~~G~i~~~g~~~~~~~ 224 (353)
T TIGR03265 146 ARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQE-EALSMADRIVVMNHGVIEQVGTPQEIYR 224 (353)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999999999765 899999999975 6789999999999999999999998864
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-45 Score=400.31 Aligned_cols=218 Identities=28% Similarity=0.473 Sum_probs=193.6
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh--h
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--S 226 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--~ 226 (746)
.|+++||+++|. +++.+|+|+|+++++||+++|+|||||||||||++|+|.. ++.+|+|.+||+++.. .
T Consensus 3 ~l~i~~l~~~~~-------~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~--~p~~G~I~~~g~~i~~~~~ 73 (356)
T PRK11650 3 GLKLQAVRKSYD-------GKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLE--RITSGEIWIGGRVVNELEP 73 (356)
T ss_pred EEEEEeEEEEeC-------CCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCC--CCCceEEEECCEECCCCCH
Confidence 489999999982 2457999999999999999999999999999999999954 3568999999998853 2
Q ss_pred ccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHH
Q 004537 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (746)
Q Consensus 227 ~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~I 306 (746)
.++.||||+|++.+||++||+||+.|+.+.+ ..++.+..++++++++.+||++..+.. +++|||||||||+|
T Consensus 74 ~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~LSgGq~QRval 145 (356)
T PRK11650 74 ADRDIAMVFQNYALYPHMSVRENMAYGLKIR---GMPKAEIEERVAEAARILELEPLLDRK-----PRELSGGQRQRVAM 145 (356)
T ss_pred HHCCEEEEeCCccccCCCCHHHHHHhHHhhc---CCCHHHHHHHHHHHHHHcCChhHhhCC-----hhhCCHHHHHHHHH
Confidence 4578999999999999999999999986532 235556667899999999998877654 57899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHH
Q 004537 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (746)
Q Consensus 307 A~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (746)
||||+.+|++|||||||++||+.++..+.+.|+++.++ |+|+|++||++. ++.++||+|++|++|+++..|+++++.
T Consensus 146 ARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~l~D~i~vl~~G~i~~~g~~~~~~ 223 (356)
T PRK11650 146 GRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQV-EAMTLADRVVVMNGGVAEQIGTPVEVY 223 (356)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCEEEEECCHHHHH
Confidence 99999999999999999999999999999999999775 899999999975 588999999999999999999999874
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-45 Score=379.17 Aligned_cols=217 Identities=29% Similarity=0.510 Sum_probs=187.4
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh----
Q 004537 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (746)
|+++||+++| +++++|+|+||++++||+++|+||||||||||+|+|+|.. ++.+|+|.++|.++..
T Consensus 1 l~~~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~--~p~~G~i~~~g~~~~~~~~~ 70 (235)
T cd03261 1 IELRGLTKSF--------GGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLL--RPDSGEVLIDGEDISGLSEA 70 (235)
T ss_pred CeEEEEEEEE--------CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC--CCCceEEEECCEEccccChh
Confidence 4789999998 2457999999999999999999999999999999999954 3468999999988642
Q ss_pred ---hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHH
Q 004537 226 ---SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (746)
Q Consensus 226 ---~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerq 302 (746)
.+++.++||+|++.+++.+||+||+.++..... ..++++..+++.++++.+||.+..++. ++.|||||||
T Consensus 71 ~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~q 143 (235)
T cd03261 71 ELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHT--RLSEEEIREIVLEKLEAVGLRGAEDLY-----PAELSGGMKK 143 (235)
T ss_pred hHHHHhcceEEEccCcccCCCCcHHHHHHHHHhhcc--CCCHHHHHHHHHHHHHHcCCchhhcCC-----hhhCCHHHHH
Confidence 246789999999999999999999998753211 123445566788999999998766654 4689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHH
Q 004537 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 381 (746)
Q Consensus 303 Rv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 381 (746)
||+|||+|+.+|++|||||||+|||+.++..+++.|++++++ |+|||+++|++. ++.+.||++++|++|++++.|+++
T Consensus 144 rv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~-~~~~~~d~v~~l~~G~i~~~g~~~ 222 (235)
T cd03261 144 RVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLD-TAFAIADRIAVLYDGKIVAEGTPE 222 (235)
T ss_pred HHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhcCEEEEEECCeEEEecCHH
Confidence 999999999999999999999999999999999999999874 899999999975 477889999999999999999988
Q ss_pred HHH
Q 004537 382 EAM 384 (746)
Q Consensus 382 ~~~ 384 (746)
++.
T Consensus 223 ~~~ 225 (235)
T cd03261 223 ELR 225 (235)
T ss_pred HHc
Confidence 753
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-45 Score=398.17 Aligned_cols=217 Identities=25% Similarity=0.516 Sum_probs=194.2
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh--h
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--S 226 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--~ 226 (746)
.|+++||+++| +++.+|+|+|+++++||+++|+|||||||||||++|+|.. ++.+|+|.+||+++.. .
T Consensus 6 ~l~~~~l~~~~--------~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~--~p~~G~I~~~g~~i~~~~~ 75 (351)
T PRK11432 6 FVVLKNITKRF--------GSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLE--KPTEGQIFIDGEDVTHRSI 75 (351)
T ss_pred EEEEEeEEEEE--------CCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCC--CCCceEEEECCEECCCCCH
Confidence 69999999998 3457999999999999999999999999999999999954 3568999999998853 3
Q ss_pred ccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHH
Q 004537 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (746)
Q Consensus 227 ~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~I 306 (746)
.+++|+||+|++.+||++||+||+.|+...+ ..++++.+++++++++.+||.+..+. .++.|||||||||+|
T Consensus 76 ~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~---~~~~~~~~~~v~~~l~~~gl~~~~~r-----~~~~LSgGq~QRVaL 147 (351)
T PRK11432 76 QQRDICMVFQSYALFPHMSLGENVGYGLKML---GVPKEERKQRVKEALELVDLAGFEDR-----YVDQISGGQQQRVAL 147 (351)
T ss_pred HHCCEEEEeCCcccCCCCCHHHHHHHHHhHc---CCCHHHHHHHHHHHHHHcCCchhhcC-----ChhhCCHHHHHHHHH
Confidence 4578999999999999999999999987543 24556677889999999999877664 457899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHH
Q 004537 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (746)
Q Consensus 307 A~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (746)
||||+.+|++|||||||++||+.++.++.+.|+++.++ |+|+|++||++. ++.+++|+|++|++|+++..|+++++.
T Consensus 148 ARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-e~~~laD~i~vm~~G~i~~~g~~~~~~ 225 (351)
T PRK11432 148 ARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQS-EAFAVSDTVIVMNKGKIMQIGSPQELY 225 (351)
T ss_pred HHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999999999999999765 899999999975 578999999999999999999999875
|
|
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-46 Score=439.12 Aligned_cols=354 Identities=23% Similarity=0.328 Sum_probs=248.9
Q ss_pred HhHHHHHHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeeccccccceecchhchh
Q 004537 9 SLARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSG 88 (746)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 88 (746)
+..++.++..++.++...|..+..+++|+|+.+..+.+++.+...+..+...+.....+...........-..+.-+..|
T Consensus 187 ~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g 266 (574)
T PRK11160 187 KPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQWLAAQRRQANLTGLSQALMILANGLTVVLMLWLA 266 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566678888999999999999999999999988888888776655544332211111110111111111112223455
Q ss_pred hhhhhhcccccchhhhhcccc-----cChhhhccCC------CCCCCCCcccccccCC-CCCCCCCCCCCCceEEEEeEE
Q 004537 89 AALSRASSASLGLSFSFTGFT-----MPPDEIADSK------PFSDDDIPEDIEAGTR-ERPKFQTEPTLPIYLKFTDVT 156 (746)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~nvs 156 (746)
+.+. .+..+.|.+..|..+. .|...+.... ..+..++.+.++..+. ..+.....+.....++|+||+
T Consensus 267 ~~~~-~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~ll~~~~~~~~~~~~~~~~~~~~i~~~~v~ 345 (574)
T PRK11160 267 AGGV-GGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIASARRINEITEQKPEVTFPTTSTAAADQVSLTLNNVS 345 (574)
T ss_pred HHHh-ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCcccCCCCCCCeEEEEEEE
Confidence 5553 5666777766654332 1211111000 0001111111111110 000000001122469999999
Q ss_pred EEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh----hccCcEE
Q 004537 157 YKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIG 232 (746)
Q Consensus 157 ~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~----~~~~~i~ 232 (746)
|+|+ .+++++|+|+|++++|||.+||+||||||||||+|+|+|. ++ +.+|+|.+||+++.+ .+|++|+
T Consensus 346 f~y~------~~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~-~~-p~~G~I~i~g~~i~~~~~~~~r~~i~ 417 (574)
T PRK11160 346 FTYP------DQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRA-WD-PQQGEILLNGQPIADYSEAALRQAIS 417 (574)
T ss_pred EECC------CCCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcC-CC-CCCceEEECCEEhhhCCHHHHHhhee
Confidence 9983 1235799999999999999999999999999999999984 44 458999999999853 5688999
Q ss_pred EEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCC------CccccccccCccccCCCHHHHHHHHH
Q 004537 233 FVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL------ERCQDTMIGGSFVRGVSGGERKRVCI 306 (746)
Q Consensus 233 yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL------~~~~~~~vg~~~~~~LSGGerqRv~I 306 (746)
||+||+.+|+. |++||+.++. + ..+ ++++.++++..++ ++..||.+|+. ...||||||||++|
T Consensus 418 ~v~Q~~~lf~~-ti~~Ni~~~~----~-~~~----~~~i~~al~~~~l~~~i~~p~GldT~vge~-g~~LSgGqrqRial 486 (574)
T PRK11160 418 VVSQRVHLFSA-TLRDNLLLAA----P-NAS----DEALIEVLQQVGLEKLLEDDKGLNAWLGEG-GRQLSGGEQRRLGI 486 (574)
T ss_pred EEcccchhhcc-cHHHHhhcCC----C-ccC----HHHHHHHHHHcCCHHHHcCccccCchhcCC-CCCCCHHHHHHHHH
Confidence 99999999975 9999999863 1 122 2345556666655 45678888865 45799999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHHH
Q 004537 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (746)
Q Consensus 307 A~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 385 (746)
||+|+++|++|+||||||+||+.++..+.+.|+++.+ ++|+|+++|+++. .+.||+|++|++|++++.|+|+|+++
T Consensus 487 ARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~-~~tviiitHr~~~--~~~~d~i~~l~~G~i~~~g~~~~l~~ 562 (574)
T PRK11160 487 ARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQ-NKTVLMITHRLTG--LEQFDRICVMDNGQIIEQGTHQELLA 562 (574)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC-CCEEEEEecChhH--HHhCCEEEEEeCCeEEEeCCHHHHHh
Confidence 9999999999999999999999999999999999864 8999999999864 46799999999999999999999875
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-44 Score=396.31 Aligned_cols=218 Identities=26% Similarity=0.467 Sum_probs=194.2
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCc--cEEEECCEeCCh-
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVG--GSITYNDHPYSK- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~--G~I~~~G~~~~~- 225 (746)
.|+++||+++| +++.+|+|+|++|++||+++|+|||||||||||++|+|.. ++.+ |+|.++|+++..
T Consensus 5 ~l~~~~l~~~~--------~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~--~p~~~~G~i~~~g~~~~~~ 74 (362)
T TIGR03258 5 GIRIDHLRVAY--------GANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFV--KAAGLTGRIAIADRDLTHA 74 (362)
T ss_pred EEEEEEEEEEE--------CCeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCC--CCCCCCEEEEECCEECCCC
Confidence 58999999998 2456999999999999999999999999999999999954 3568 999999998753
Q ss_pred -hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHH
Q 004537 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (746)
Q Consensus 226 -~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv 304 (746)
..++.|+||+|++.+||++||+||+.|+...+ ..++.+.+++++++++.+||++..++. +++|||||||||
T Consensus 75 ~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~~~-----~~~LSgGq~QRv 146 (362)
T TIGR03258 75 PPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQ---KMPKADIAERVADALKLVGLGDAAAHL-----PAQLSGGMQQRI 146 (362)
T ss_pred CHHHCCEEEEECCcccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCCchhhCC-----hhhCCHHHHHHH
Confidence 24578999999999999999999999987543 245566677899999999998877754 568999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC--CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHH
Q 004537 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA--GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (746)
Q Consensus 305 ~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~--g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~ 382 (746)
+|||||+.+|++|||||||+|||+.++.++.+.|+++.++ |+|+|++||++. ++..++|+|++|++|+++..|++++
T Consensus 147 aLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~-ea~~l~dri~vl~~G~i~~~g~~~~ 225 (362)
T TIGR03258 147 AIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQD-DALTLADKAGIMKDGRLAAHGEPQA 225 (362)
T ss_pred HHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHH
Confidence 9999999999999999999999999999999999999876 799999999975 5788999999999999999999998
Q ss_pred HHH
Q 004537 383 AMA 385 (746)
Q Consensus 383 ~~~ 385 (746)
+..
T Consensus 226 ~~~ 228 (362)
T TIGR03258 226 LYD 228 (362)
T ss_pred HHh
Confidence 853
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-44 Score=395.09 Aligned_cols=220 Identities=25% Similarity=0.471 Sum_probs=192.9
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh--h
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--S 226 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--~ 226 (746)
.|+++||+++| +++.+|+|+|++|++||+++|+||||||||||||+|+|.. ++.+|+|.+||+++.. .
T Consensus 2 ~L~i~~l~~~~--------~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~--~p~~G~I~i~g~~i~~~~~ 71 (353)
T PRK10851 2 SIEIANIKKSF--------GRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLE--HQTSGHIRFHGTDVSRLHA 71 (353)
T ss_pred EEEEEEEEEEe--------CCeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC--CCCCcEEEECCEECCCCCH
Confidence 48899999998 3457999999999999999999999999999999999954 3568999999998753 3
Q ss_pred ccCcEEEEecCCcCCCCCCHHHHHHHHHhccCC-CCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHH
Q 004537 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLP-NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (746)
Q Consensus 227 ~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~ 305 (746)
.++.++||+|++.+||++||+||+.|+...... ...++++..++++++++.++|++..+. ++.+|||||||||+
T Consensus 72 ~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-----~~~~LSgGq~QRva 146 (353)
T PRK10851 72 RDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADR-----YPAQLSGGQKQRVA 146 (353)
T ss_pred HHCCEEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhC-----ChhhCCHHHHHHHH
Confidence 457899999999999999999999998653211 123455667789999999999877665 45789999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHH
Q 004537 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (746)
Q Consensus 306 IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (746)
|||||+.+|++|||||||+|||+.++..+.+.|+++.++ |+|+|++||++. ++.++||+|++|++|++++.|+++++.
T Consensus 147 lArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~-ea~~~~Dri~vl~~G~i~~~g~~~~i~ 225 (353)
T PRK10851 147 LARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQE-EAMEVADRVVVMSQGNIEQAGTPDQVW 225 (353)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999999999999999999876 899999999975 578899999999999999999999875
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-44 Score=390.96 Aligned_cols=220 Identities=28% Similarity=0.418 Sum_probs=194.2
Q ss_pred ceEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh--
Q 004537 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (746)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (746)
..|+++||+++| +++.+|+||||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|+++..
T Consensus 40 ~~i~i~nl~k~y--------~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~--p~~G~i~i~G~~~~~~~ 109 (340)
T PRK13536 40 VAIDLAGVSKSY--------GDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTS--PDAGKITVLGVPVPARA 109 (340)
T ss_pred eeEEEEEEEEEE--------CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCceEEEECCEECCcch
Confidence 369999999998 34579999999999999999999999999999999999653 468999999998753
Q ss_pred -hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHH
Q 004537 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (746)
Q Consensus 226 -~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv 304 (746)
..++.|||++|++.+++.+||+||+.+....+. .+..+..++++++++.++|++..++.+ ++||||||||+
T Consensus 110 ~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~ll~~~~L~~~~~~~~-----~~LS~G~kqrv 181 (340)
T PRK13536 110 RLARARIGVVPQFDNLDLEFTVRENLLVFGRYFG---MSTREIEAVIPSLLEFARLESKADARV-----SDLSGGMKRRL 181 (340)
T ss_pred HHHhccEEEEeCCccCCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhCCCh-----hhCCHHHHHHH
Confidence 356789999999999999999999997654431 233445567788999999998777665 58999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHH
Q 004537 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (746)
Q Consensus 305 ~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (746)
+||+||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. ++.++||+|++|++|++++.|+++++.
T Consensus 182 ~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~-e~~~~~d~i~il~~G~i~~~g~~~~l~ 260 (340)
T PRK13536 182 TLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDRLCVLEAGRKIAEGRPHALI 260 (340)
T ss_pred HHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999999999999999999999999878999999999975 678899999999999999999999986
Q ss_pred HH
Q 004537 385 AY 386 (746)
Q Consensus 385 ~~ 386 (746)
..
T Consensus 261 ~~ 262 (340)
T PRK13536 261 DE 262 (340)
T ss_pred hh
Confidence 53
|
|
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-46 Score=431.68 Aligned_cols=355 Identities=25% Similarity=0.335 Sum_probs=252.3
Q ss_pred HHHHHHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeeccccccceecchhchhhh
Q 004537 11 ARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSGAA 90 (746)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 90 (746)
.++.++..++..+...|...+.+|+|+++.+....+++.+......+...+.....+........+..-..+.-+..|+.
T Consensus 169 ~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 248 (544)
T TIGR01842 169 LKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKYFRIVLQSLVLGLGAY 248 (544)
T ss_pred HHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666777778888999999999999999988888876665443332211111111111111222223444568888
Q ss_pred hhhhcccccchhhhhccccc----ChhhhccCCC------CCCCCCcccccccCCCCCCCCCCCCCCceEEEEeEEEEEe
Q 004537 91 LSRASSASLGLSFSFTGFTM----PPDEIADSKP------FSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFTDVTYKVI 160 (746)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~nvs~~~~ 160 (746)
++..|.++.|.+..+..+.. |...+..... .+..++.+.++..+...+.. ..+.....++++|++|+|+
T Consensus 249 l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~-~~~~~~~~i~~~~v~~~y~ 327 (544)
T TIGR01842 249 LAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDPAM-PLPEPEGHLSVENVTIVPP 327 (544)
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCCC-CCCCCCCeEEEEEEEEEcC
Confidence 89899999999888775543 2222111100 00111111111111110000 1111123699999999983
Q ss_pred eccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh----hccCcEEEEec
Q 004537 161 LKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQ 236 (746)
Q Consensus 161 ~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~----~~~~~i~yv~Q 236 (746)
.+++++|+|+|++++|||.++|+||||||||||+++|+|.. + +.+|+|.+||+++.+ .+++.++||+|
T Consensus 328 ------~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~-~-~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q 399 (544)
T TIGR01842 328 ------GGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIW-P-PTSGSVRLDGADLKQWDRETFGKHIGYLPQ 399 (544)
T ss_pred ------CCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-C-CCCceEEECCEehhhCCHHHHhhheEEecC
Confidence 23467999999999999999999999999999999999854 3 458999999998753 46788999999
Q ss_pred CCcCCCCCCHHHHHHHHHhccCCCCCcHHHH-----HHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHHHHHh
Q 004537 237 DDVLFPHLTVKETLTYAALLRLPNTLTKQQK-----EKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEII 311 (746)
Q Consensus 237 ~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~-----~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~ 311 (746)
++.+|+. |++||+.+... ..++++. ....++.++.+ ++..||.+|+. ...||||||||++|||||+
T Consensus 400 ~~~lf~~-ti~~Ni~~~~~-----~~~~~~~~~~~~~~~~~~~i~~l--~~gl~t~~~~~-g~~LSgGq~qrl~lARall 470 (544)
T TIGR01842 400 DVELFPG-TVAENIARFGE-----NADPEKIIEAAKLAGVHELILRL--PDGYDTVIGPG-GATLSGGQRQRIALARALY 470 (544)
T ss_pred Ccccccc-cHHHHHhccCC-----CCCHHHHHHHHHHhChHHHHHhC--ccccccccCCC-cCCCCHHHHHHHHHHHHHh
Confidence 9999985 99999986421 1222222 22334555544 55678888754 5679999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHHH
Q 004537 312 INPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (746)
Q Consensus 312 ~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 385 (746)
++|++|+|||||+|||+.++..+.+.|+++..+|+|+|+++|+++ ..+.||+|++|++|++++.|+++++++
T Consensus 471 ~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~--~~~~~d~i~~l~~G~i~~~g~~~~l~~ 542 (544)
T TIGR01842 471 GDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPS--LLGCVDKILVLQDGRIARFGERDEVLA 542 (544)
T ss_pred cCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHH--HHHhCCEEEEEECCEEEeeCCHHHHhh
Confidence 999999999999999999999999999998756899999999986 357899999999999999999998764
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-45 Score=366.00 Aligned_cols=221 Identities=28% Similarity=0.435 Sum_probs=189.1
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (746)
.++++|+++.|..+. .-.++|+||||+|.+||+++|+|+||||||||.++|+|.. .+.+|+|.++|++..+
T Consensus 3 ~l~v~nl~~~y~~~~----~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~--~p~~G~I~~~G~~~~~~~~ 76 (252)
T COG1124 3 LLSVRNLSIVYGGGK----FAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLE--KPSSGSILLDGKPLAPKKR 76 (252)
T ss_pred eEEEeceEEEecCCc----chhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhccc--CCCCceEEECCcccCcccc
Confidence 589999999994221 1226999999999999999999999999999999999954 3568999999988754
Q ss_pred --hccCcEEEEecCCc--CCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHH
Q 004537 226 --SLKSKIGFVTQDDV--LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301 (746)
Q Consensus 226 --~~~~~i~yv~Q~~~--l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGer 301 (746)
..++.|-+|||||. +.|..||++.|.-+... ...++. ++++.++++.+||++..- ++++.+||||||
T Consensus 77 ~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~---~~~~~~--~~~i~~~L~~VgL~~~~l----~R~P~eLSGGQ~ 147 (252)
T COG1124 77 AKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRP---HGLSKS--QQRIAELLDQVGLPPSFL----DRRPHELSGGQR 147 (252)
T ss_pred chhhccceeEEecCCccccCcchhHHHHHhhhhcc---CCccHH--HHHHHHHHHHcCCCHHHH----hcCchhcChhHH
Confidence 35788999999984 78999999999866542 233333 334899999999986433 356789999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCH
Q 004537 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380 (746)
Q Consensus 302 qRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~ 380 (746)
||++|||||+.+|++||||||||+||+..+.+|+++|.++.++ +.|.|+++||.+ .+..+||||+||++|++++.++.
T Consensus 148 QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~-~v~~~cdRi~Vm~~G~ivE~~~~ 226 (252)
T COG1124 148 QRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLA-LVEHMCDRIAVMDNGQIVEIGPT 226 (252)
T ss_pred HHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHH-HHHHHhhheeeeeCCeEEEeech
Confidence 9999999999999999999999999999999999999999865 789999999975 58899999999999999999999
Q ss_pred HHHHH
Q 004537 381 SEAMA 385 (746)
Q Consensus 381 ~~~~~ 385 (746)
+++..
T Consensus 227 ~~l~~ 231 (252)
T COG1124 227 EELLS 231 (252)
T ss_pred hhhhc
Confidence 99864
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-44 Score=372.97 Aligned_cols=218 Identities=29% Similarity=0.532 Sum_probs=194.1
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCC----
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---- 224 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~---- 224 (746)
.++++|++|+|. .+ +.+|+|+|++|++||.++|+||||||||||+++|+|.+. +.+|+|.++|.++.
T Consensus 3 ~i~~~~l~~~y~------~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~--p~~G~v~~~g~~~~~~~~ 73 (235)
T COG1122 3 MIEAENLSFRYP------GR-KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLK--PTSGEVLVDGLDTSSEKS 73 (235)
T ss_pred eEEEEEEEEEcC------CC-ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCc--CCCCEEEECCeeccchhh
Confidence 588999999982 22 689999999999999999999999999999999999653 45899999999865
Q ss_pred -hhccCcEEEEecCC--cCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHH
Q 004537 225 -KSLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301 (746)
Q Consensus 225 -~~~~~~i~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGer 301 (746)
..+++++|||+|+| .+|. -||.|.+.|+.... .+++++.+++++++++.+|+.+.++. .+..||||||
T Consensus 74 ~~~~~~~vG~VfQnpd~q~~~-~tV~~evafg~~n~---g~~~~e~~~rv~~~l~~vgl~~~~~r-----~p~~LSGGqk 144 (235)
T COG1122 74 LLELRQKVGLVFQNPDDQLFG-PTVEDEVAFGLENL---GLPREEIEERVAEALELVGLEELLDR-----PPFNLSGGQK 144 (235)
T ss_pred HHHhhcceEEEEECccccccc-CcHHHHHhhchhhc---CCCHHHHHHHHHHHHHHcCchhhccC-----CccccCCcce
Confidence 25689999999997 5665 59999999997543 35677788999999999999988775 4678999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCH
Q 004537 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380 (746)
Q Consensus 302 qRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~ 380 (746)
|||+||.+|+.+|++|+|||||||||+..+.++++.++++.++ |+|+|++|||.. .+...||++++|++|+++++|++
T Consensus 145 qRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~-~~~~~ad~v~vl~~G~i~~~g~p 223 (235)
T COG1122 145 QRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLE-LVLEYADRVVVLDDGKILADGDP 223 (235)
T ss_pred eeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHH-HHHhhCCEEEEEECCEEeecCCH
Confidence 9999999999999999999999999999999999999999887 699999999965 58888999999999999999998
Q ss_pred HHHHH
Q 004537 381 SEAMA 385 (746)
Q Consensus 381 ~~~~~ 385 (746)
+++.+
T Consensus 224 ~~i~~ 228 (235)
T COG1122 224 AEIFN 228 (235)
T ss_pred HHHhh
Confidence 87754
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-44 Score=394.75 Aligned_cols=217 Identities=25% Similarity=0.450 Sum_probs=193.3
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh--h
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--S 226 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--~ 226 (746)
.|+++|++++| +++.+|+|+|+++++||+++|+|||||||||||++|+|.. ++.+|+|.++|+++.. .
T Consensus 14 ~L~l~~l~~~~--------~~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~--~p~~G~I~~~g~~i~~~~~ 83 (375)
T PRK09452 14 LVELRGISKSF--------DGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFE--TPDSGRIMLDGQDITHVPA 83 (375)
T ss_pred eEEEEEEEEEE--------CCeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCC--CCCceEEEECCEECCCCCH
Confidence 59999999998 3457999999999999999999999999999999999954 3568999999998753 3
Q ss_pred ccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHH
Q 004537 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (746)
Q Consensus 227 ~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~I 306 (746)
.++.++||+|++.+||++||+||+.|+...+ ..++.+.+++++++++.++|++..+.. +.+|||||||||+|
T Consensus 84 ~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----p~~LSgGq~QRVaL 155 (375)
T PRK09452 84 ENRHVNTVFQSYALFPHMTVFENVAFGLRMQ---KTPAAEITPRVMEALRMVQLEEFAQRK-----PHQLSGGQQQRVAI 155 (375)
T ss_pred HHCCEEEEecCcccCCCCCHHHHHHHHHhhc---CCCHHHHHHHHHHHHHHcCCchhhhCC-----hhhCCHHHHHHHHH
Confidence 4678999999999999999999999986532 234556667889999999998877754 56899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHH
Q 004537 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (746)
Q Consensus 307 A~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (746)
||||+.+|++|||||||++||+.++..+.+.|+++.++ |+|+|++||++. ++..++|+|++|++|+++..|+++++.
T Consensus 156 ARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~-ea~~laDri~vl~~G~i~~~g~~~~i~ 233 (375)
T PRK09452 156 ARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQE-EALTMSDRIVVMRDGRIEQDGTPREIY 233 (375)
T ss_pred HHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999999999999999875 899999999975 578899999999999999999999875
|
|
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-46 Score=442.65 Aligned_cols=356 Identities=23% Similarity=0.338 Sum_probs=253.6
Q ss_pred hHHHHHHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeeccccccceecchhchhh
Q 004537 10 LARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSGA 89 (746)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 89 (746)
..++.+++-++..+...|...+.+|+|+++.+....+++.+..........+.....+.........+.-..+.-++.|+
T Consensus 305 ~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~ 384 (694)
T TIGR01846 305 RVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLGNIAGQAIELIQKLTFAILLWFGA 384 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 44455666777888889999999999999999999888887776554433321111111100111111122334456899
Q ss_pred hhhhhcccccchhhhhccccc----ChhhhccCCC------CCCCCCcccccccCCCCC-CCCCCCCCCceEEEEeEEEE
Q 004537 90 ALSRASSASLGLSFSFTGFTM----PPDEIADSKP------FSDDDIPEDIEAGTRERP-KFQTEPTLPIYLKFTDVTYK 158 (746)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~nvs~~ 158 (746)
.++..|.++.|.+..|..+.. |...+..... ....++.+.++..+.... .....+.....++++||+|+
T Consensus 385 ~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~~~~~~~~~~~i~~~~vsf~ 464 (694)
T TIGR01846 385 HLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPRSAGLAALPELRGAITFENIRFR 464 (694)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCCCCCCCCCCCCeEEEEEEEEE
Confidence 999999999998888775532 3222211100 000111111111110000 00011122346999999999
Q ss_pred EeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh----hccCcEEEE
Q 004537 159 VILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFV 234 (746)
Q Consensus 159 ~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~----~~~~~i~yv 234 (746)
|. ..++++|+|+|+++++||.+||+|+||||||||+|+|+|.. + +.+|+|.+||+++.+ .+|++|+||
T Consensus 465 y~------~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~-~-p~~G~I~idg~~i~~~~~~~~r~~i~~v 536 (694)
T TIGR01846 465 YA------PDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLY-T-PQHGQVLVDGVDLAIADPAWLRRQMGVV 536 (694)
T ss_pred cC------CCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCC-C-CCCceEEECCEehhhCCHHHHHHhCeEE
Confidence 93 23457999999999999999999999999999999999853 3 458999999999853 578899999
Q ss_pred ecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHH-----HHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHHHH
Q 004537 235 TQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKE-----KRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNE 309 (746)
Q Consensus 235 ~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~-----~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~a 309 (746)
+|++.+|+ .|++|||.++. + ..+.++.. ..+++.++. +++..||.+|+. ...||||||||++||||
T Consensus 537 ~q~~~lf~-~ti~eNi~~~~----~-~~~~~~i~~a~~~~~l~~~i~~--lp~gl~t~i~~~-g~~LSgGq~qri~lARa 607 (694)
T TIGR01846 537 LQENVLFS-RSIRDNIALCN----P-GAPFEHVIHAAKLAGAHDFISE--LPQGYNTEVGEK-GANLSGGQRQRIAIARA 607 (694)
T ss_pred ccCCeehh-hhHHHHHhcCC----C-CCCHHHHHHHHHHcChHHHHHh--CcCccCcEecCC-CCCCCHHHHHHHHHHHH
Confidence 99999997 59999998752 1 12222222 123344443 366788988865 46799999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHHH
Q 004537 310 IIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (746)
Q Consensus 310 L~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 385 (746)
|+++|++||||||||+||+.++..+.+.|+++. +++|+|++||+++. .+.||+|++|++|++++.|+++++++
T Consensus 608 ll~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~--~~~~d~ii~l~~G~i~~~g~~~~l~~ 680 (694)
T TIGR01846 608 LVGNPRILIFDEATSALDYESEALIMRNMREIC-RGRTVIIIAHRLST--VRACDRIIVLEKGQIAESGRHEELLA 680 (694)
T ss_pred HHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEeCChHH--HHhCCEEEEEeCCEEEEeCCHHHHHH
Confidence 999999999999999999999999999999985 58999999999863 46799999999999999999999874
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-44 Score=368.88 Aligned_cols=215 Identities=28% Similarity=0.475 Sum_probs=186.7
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---h
Q 004537 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---S 226 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---~ 226 (746)
|+++|++++| +++.+|+|+|+++++||+++|+||||||||||+++|+|.. ++.+|+|.++|.++.. .
T Consensus 1 i~~~~~~~~~--------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~--~~~~G~i~~~g~~~~~~~~~ 70 (220)
T cd03265 1 IEVENLVKKY--------GDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLL--KPTSGRATVAGHDVVREPRE 70 (220)
T ss_pred CEEEEEEEEE--------CCEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCC--CCCceEEEECCEecCcChHH
Confidence 4789999998 3457999999999999999999999999999999999964 3468999999987642 3
Q ss_pred ccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHH
Q 004537 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (746)
Q Consensus 227 ~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~I 306 (746)
.+++++|++|++.+++.+||+||+.+....+ .....+..++++++++.++|++..++. ++.||||||||++|
T Consensus 71 ~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qr~~l 142 (220)
T cd03265 71 VRRRIGIVFQDLSVDDELTGWENLYIHARLY---GVPGAERRERIDELLDFVGLLEAADRL-----VKTYSGGMRRRLEI 142 (220)
T ss_pred HhhcEEEecCCccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCC-----hhhCCHHHHHHHHH
Confidence 4568999999999999999999999875432 123344556788999999998766654 46899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHH
Q 004537 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (746)
Q Consensus 307 A~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 383 (746)
||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.+.||++++|++|++++.|+++++
T Consensus 143 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 143 ARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYME-EAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred HHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 99999999999999999999999999999999999876 899999999975 57788999999999999999987763
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-45 Score=349.21 Aligned_cols=214 Identities=26% Similarity=0.460 Sum_probs=186.5
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh--hc
Q 004537 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SL 227 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--~~ 227 (746)
+.+++|.|+|. ..=-.++++|++||++||+||||||||||||+|+|.. . +.+|+|++||++.+. ..
T Consensus 2 l~L~~V~~~y~----------~~~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~-~-P~~G~i~i~g~d~t~~~P~ 69 (231)
T COG3840 2 LALDDVRFSYG----------HLPMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFE-T-PASGEILINGVDHTASPPA 69 (231)
T ss_pred ccccceEEeeC----------cceEEEEEeecCCcEEEEECCCCccHHHHHHHHHhcc-C-CCCceEEEcCeecCcCCcc
Confidence 56788888882 1224678899999999999999999999999999954 3 468999999999863 45
Q ss_pred cCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHH
Q 004537 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (746)
Q Consensus 228 ~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA 307 (746)
.|-++++||+.+||.++||.+|+.++..-.+ ++ .++.+++++.++.++||..+.+.. +.+|||||||||++|
T Consensus 70 ~RPVSmlFQEnNLFaHLtV~qNigLGl~P~L--kL-~a~~r~~v~~aa~~vGl~~~~~RL-----P~~LSGGqRQRvALA 141 (231)
T COG3840 70 ERPVSMLFQENNLFAHLTVAQNIGLGLSPGL--KL-NAEQREKVEAAAAQVGLAGFLKRL-----PGELSGGQRQRVALA 141 (231)
T ss_pred cCChhhhhhccccchhhhhhhhhcccCCccc--cc-CHHHHHHHHHHHHHhChhhHhhhC-----ccccCchHHHHHHHH
Confidence 7789999999999999999999999853221 12 355677899999999999888764 468999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHH
Q 004537 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (746)
Q Consensus 308 ~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (746)
|+|+++-+||+||||+|+|||.-+.++..++.+++++ +.|++++||+|+ ++.+.+|+++++++|||.+.|+.++.+
T Consensus 142 RclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~-Da~~ia~~~~fl~~Gri~~~g~~~~~~ 218 (231)
T COG3840 142 RCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPE-DAARIADRVVFLDNGRIAAQGSTQELL 218 (231)
T ss_pred HHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhhhceEEEeCCEEEeeccHHHHh
Confidence 9999999999999999999999999999999999864 889999999987 578999999999999999999988865
|
|
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-46 Score=431.73 Aligned_cols=353 Identities=21% Similarity=0.269 Sum_probs=250.4
Q ss_pred hHHHHHHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeeccccccceecchhchhh
Q 004537 10 LARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSGA 89 (746)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 89 (746)
..++.++..++..+...|...+.+++|+++.+....+++.+..........+.....+...........-..+.-+..|+
T Consensus 164 ~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~ 243 (569)
T PRK10789 164 RFKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGGGS 243 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555667777888899999999999999999998888887665444333221111111101111111122334456788
Q ss_pred hhhhhcccccchhhhhccccc----ChhhhccC-------CCCCCCCCcccccccCCCCCCCCCCCCCCceEEEEeEEEE
Q 004537 90 ALSRASSASLGLSFSFTGFTM----PPDEIADS-------KPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFTDVTYK 158 (746)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~nvs~~ 158 (746)
.++..|.++.|.+..+..+.. |...+... .. +..++.+.+...+.........+.....++++|++|+
T Consensus 244 ~lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~-a~~ri~~ll~~~~~~~~~~~~~~~~~~~I~~~~v~~~ 322 (569)
T PRK10789 244 WMVVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSA-AYSRIRAMLAEAPVVKDGSEPVPEGRGELDVNIRQFT 322 (569)
T ss_pred HHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcCCCcccCCCCCCCCCCCcEEEEEEEEE
Confidence 888889999998888775543 22111110 00 0011111111111000000001111235999999999
Q ss_pred EeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh----hccCcEEEE
Q 004537 159 VILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFV 234 (746)
Q Consensus 159 ~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~----~~~~~i~yv 234 (746)
|+ ..++++|+|+|+++++|+.++|+||||||||||+++|+|.. + +.+|+|.+||+++.+ .+++.++||
T Consensus 323 y~------~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~-~-p~~G~i~~~g~~~~~~~~~~~~~~i~~v 394 (569)
T PRK10789 323 YP------QTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHF-D-VSEGDIRFHDIPLTKLQLDSWRSRLAVV 394 (569)
T ss_pred CC------CCCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhccc-C-CCCCEEEECCEEHhhCCHHHHHhheEEE
Confidence 83 23457999999999999999999999999999999999853 3 468999999998753 567889999
Q ss_pred ecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHc-------CCCccccccccCccccCCCHHHHHHHHHH
Q 004537 235 TQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL-------GLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (746)
Q Consensus 235 ~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l-------gL~~~~~~~vg~~~~~~LSGGerqRv~IA 307 (746)
+|++.+|+. |++|||.++. + ..++++ ++++++.. .+++..||.+|+. ...||||||||++||
T Consensus 395 ~q~~~lf~~-ti~~Ni~~~~----~-~~~~~~----~~~~~~~~~l~~~i~~lp~gl~t~~~~~-g~~LSgGq~qRi~lA 463 (569)
T PRK10789 395 SQTPFLFSD-TVANNIALGR----P-DATQQE----IEHVARLASVHDDILRLPQGYDTEVGER-GVMLSGGQKQRISIA 463 (569)
T ss_pred ccCCeeccc-cHHHHHhcCC----C-CCCHHH----HHHHHHHcCCHHHHHhCcCcccceecCC-CCcCCHHHHHHHHHH
Confidence 999999975 9999998762 1 123322 22233332 3467788888764 457999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHHH
Q 004537 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (746)
Q Consensus 308 ~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 385 (746)
|||+++|++|||||||++||+.++..+.+.|+++. +|+|+|+++|+++. .+.||+|++|++|++++.|+++++++
T Consensus 464 Rall~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tii~itH~~~~--~~~~d~i~~l~~G~i~~~g~~~~l~~ 538 (569)
T PRK10789 464 RALLLNAEILILDDALSAVDGRTEHQILHNLRQWG-EGRTVIISAHRLSA--LTEASEILVMQHGHIAQRGNHDQLAQ 538 (569)
T ss_pred HHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecchhH--HHcCCEEEEEeCCEEEEecCHHHHHH
Confidence 99999999999999999999999999999999985 58999999999853 57799999999999999999999864
|
|
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-44 Score=385.01 Aligned_cols=218 Identities=28% Similarity=0.421 Sum_probs=190.7
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (746)
.|+++||+++| +++.+|+|+||+|++||+++|+||||||||||+++|+|.. ++.+|+|.++|.++..
T Consensus 4 ~i~~~~l~~~~--------~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~--~p~~G~i~~~g~~~~~~~~ 73 (303)
T TIGR01288 4 AIDLVGVSKSY--------GDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMI--SPDRGKITVLGEPVPSRAR 73 (303)
T ss_pred EEEEEeEEEEe--------CCeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC--CCCceEEEECCEECcccHH
Confidence 58999999998 3457999999999999999999999999999999999964 3468999999998742
Q ss_pred hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHH
Q 004537 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (746)
Q Consensus 226 ~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~ 305 (746)
..+++++|++|++.+++.+||+||+.+..... ..+..+..++++++++.++|++..++.+ ++||||||||++
T Consensus 74 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~ll~~~~l~~~~~~~~-----~~LSgG~~qrv~ 145 (303)
T TIGR01288 74 LARVAIGVVPQFDNLDPEFTVRENLLVFGRYF---GMSTREIEAVIPSLLEFARLESKADVRV-----ALLSGGMKRRLT 145 (303)
T ss_pred HHhhcEEEEeccccCCcCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCch-----hhCCHHHHHHHH
Confidence 34678999999999999999999998754432 1233444566788999999988777654 589999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHHH
Q 004537 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (746)
Q Consensus 306 IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 385 (746)
|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. ++.+.||++++|++|++++.|+++++..
T Consensus 146 la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 224 (303)
T TIGR01288 146 LARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDRLCVLESGRKIAEGRPHALID 224 (303)
T ss_pred HHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999999999999999999999999878999999999975 5778999999999999999999998764
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-44 Score=392.97 Aligned_cols=219 Identities=26% Similarity=0.459 Sum_probs=193.8
Q ss_pred ceEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh--
Q 004537 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (746)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (746)
..|+++|++++| +++.+|+|+|+++++||+++|+|||||||||||++|+|.. ++.+|+|.++|+++..
T Consensus 18 ~~l~l~~v~~~~--------~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~--~p~~G~I~i~g~~i~~~~ 87 (377)
T PRK11607 18 PLLEIRNLTKSF--------DGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFE--QPTAGQIMLDGVDLSHVP 87 (377)
T ss_pred ceEEEEeEEEEE--------CCEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC--CCCceEEEECCEECCCCC
Confidence 369999999998 3457999999999999999999999999999999999954 3568999999998753
Q ss_pred hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHH
Q 004537 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (746)
Q Consensus 226 ~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~ 305 (746)
..++.||||+|++.+||++||.||+.|+...+ ..++.+.++++.++++.++|.+..+. .+++|||||||||+
T Consensus 88 ~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~v~~~l~~l~L~~~~~~-----~~~~LSgGq~QRVa 159 (377)
T PRK11607 88 PYQRPINMMFQSYALFPHMTVEQNIAFGLKQD---KLPKAEIASRVNEMLGLVHMQEFAKR-----KPHQLSGGQRQRVA 159 (377)
T ss_pred HHHCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcC-----ChhhCCHHHHHHHH
Confidence 34678999999999999999999999986533 23456667789999999999877665 45789999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHH
Q 004537 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (746)
Q Consensus 306 IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (746)
|||||+.+|++|||||||++||+.++..+.+.|+++.++ |.|+|++|||+. ++..++|++++|++|+++..|+++++.
T Consensus 160 LARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~laDri~vl~~G~i~~~g~~~~~~ 238 (377)
T PRK11607 160 LARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQE-EAMTMAGRIAIMNRGKFVQIGEPEEIY 238 (377)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEeCCEEEEEcCHHHHH
Confidence 999999999999999999999999999999999998764 899999999975 578999999999999999999999875
Q ss_pred H
Q 004537 385 A 385 (746)
Q Consensus 385 ~ 385 (746)
.
T Consensus 239 ~ 239 (377)
T PRK11607 239 E 239 (377)
T ss_pred h
Confidence 3
|
|
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-44 Score=390.47 Aligned_cols=220 Identities=25% Similarity=0.406 Sum_probs=190.7
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh----
Q 004537 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (746)
|+++||+++|... ..++++|+|+||+|++||+++|+||||||||||+|+|+|.. ++.+|+|.++|+++..
T Consensus 2 i~i~~l~~~y~~~----~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~--~p~~G~I~~~g~~i~~~~~~ 75 (343)
T PRK11153 2 IELKNISKVFPQG----GRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLE--RPTSGRVLVDGQDLTALSEK 75 (343)
T ss_pred EEEEeEEEEeCCC----CCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC--CCCceEEEECCEECCcCCHH
Confidence 7899999998310 12457999999999999999999999999999999999964 3568999999998752
Q ss_pred ---hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHH
Q 004537 226 ---SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (746)
Q Consensus 226 ---~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerq 302 (746)
..+++|+||+|++.+++.+||+||+.+..... ..+..+..+++.++++.+||++..++. +++|||||||
T Consensus 76 ~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~LSgGq~q 147 (343)
T PRK11153 76 ELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELA---GTPKAEIKARVTELLELVGLSDKADRY-----PAQLSGGQKQ 147 (343)
T ss_pred HHHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCC-----hhhCCHHHHH
Confidence 23578999999999999999999999876432 234445567789999999998776654 4689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHH
Q 004537 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 381 (746)
Q Consensus 303 Rv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 381 (746)
||+|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. ++.++||++++|++|++++.|+++
T Consensus 148 Rv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~-~i~~~~d~v~~l~~G~i~~~g~~~ 226 (343)
T PRK11153 148 RVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMD-VVKRICDRVAVIDAGRLVEQGTVS 226 (343)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHH
Confidence 999999999999999999999999999999999999999765 899999999975 577889999999999999999998
Q ss_pred HHH
Q 004537 382 EAM 384 (746)
Q Consensus 382 ~~~ 384 (746)
++.
T Consensus 227 ~~~ 229 (343)
T PRK11153 227 EVF 229 (343)
T ss_pred HHH
Confidence 875
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-44 Score=371.00 Aligned_cols=219 Identities=30% Similarity=0.484 Sum_probs=186.9
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh----
Q 004537 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (746)
++++||+++| +++.+|+|+|+++++||+++|+||||||||||+++|+|.. ++.+|+|.++|.++..
T Consensus 1 l~~~~l~~~~--------~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~--~~~~G~i~~~g~~~~~~~~~ 70 (236)
T cd03219 1 LEVRGLTKRF--------GGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFL--RPTSGSVLFDGEDITGLPPH 70 (236)
T ss_pred CeeeeeEEEE--------CCEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCC--CCCCceEEECCEECCCCCHH
Confidence 4689999998 2356999999999999999999999999999999999964 3468999999998753
Q ss_pred h-ccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCC-------CcHHHHHHHHHHHHHHcCCCccccccccCccccCCC
Q 004537 226 S-LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNT-------LTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVS 297 (746)
Q Consensus 226 ~-~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~-------~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS 297 (746)
. .++.++|++|++.+++.+||+||+.+......... .......++++++++.+||++..++. ++.||
T Consensus 71 ~~~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS 145 (236)
T cd03219 71 EIARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRP-----AGELS 145 (236)
T ss_pred HHHhcCEEEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCC-----hhhCC
Confidence 1 24569999999999999999999998754321110 01334456788999999998766654 46899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEe
Q 004537 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (746)
Q Consensus 298 GGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~ 377 (746)
|||||||+|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. ++.+.||++++|++|++++.
T Consensus 146 gG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~i~~l~~G~i~~~ 224 (236)
T cd03219 146 YGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMD-VVMSLADRVTVLDQGRVIAE 224 (236)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEeCCEEEee
Confidence 99999999999999999999999999999999999999999999877999999999976 57788999999999999999
Q ss_pred cCHHHHH
Q 004537 378 GKASEAM 384 (746)
Q Consensus 378 G~~~~~~ 384 (746)
|+++++.
T Consensus 225 ~~~~~~~ 231 (236)
T cd03219 225 GTPDEVR 231 (236)
T ss_pred cCHHHhc
Confidence 9988764
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-45 Score=432.00 Aligned_cols=350 Identities=18% Similarity=0.240 Sum_probs=239.2
Q ss_pred hHHHHHHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccce-eeeccccccceecchhchh
Q 004537 10 LARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTH-IRKSRSAQLKLELDEVSSG 88 (746)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g 88 (746)
..+..+++..+..+...|...+.+++|+++.+....+++.+...+......+.....+.. .......+.-+.+.-+..+
T Consensus 192 ~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (592)
T PRK10790 192 IVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTLRLDGFLLRPLLSLFSALILCGLLMLF 271 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445666777788888899999999999987777777665543333211100000000 0000001111111111222
Q ss_pred hhhhhhcccccchhhhhccccc----ChhhhccCCC------CCCCCCcccccccCCCCCCCCCCCCCCceEEEEeEEEE
Q 004537 89 AALSRASSASLGLSFSFTGFTM----PPDEIADSKP------FSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFTDVTYK 158 (746)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~nvs~~ 158 (746)
+. ...|.++.|.+..+..+.. |..++..... .+..++.+.++..+.. ......+.....++++||+|+
T Consensus 272 ~~-~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~-~~~~~~~~~~~~i~~~~v~f~ 349 (592)
T PRK10790 272 GF-SASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGPRQQ-YGNDDRPLQSGRIDIDNVSFA 349 (592)
T ss_pred HH-HHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc-CCCCccCCCCCeEEEEEEEEE
Confidence 32 4567778887777764432 2222211000 0001111111110000 000001111235999999999
Q ss_pred EeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh----hccCcEEEE
Q 004537 159 VILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFV 234 (746)
Q Consensus 159 ~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~----~~~~~i~yv 234 (746)
|+ .++++|+|+|+++++||.+||+|+||||||||+|+|+|. ++ +.+|+|.+||.++++ .++++|+||
T Consensus 350 y~-------~~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl-~~-p~~G~I~idg~~i~~~~~~~l~~~i~~v 420 (592)
T PRK10790 350 YR-------DDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGY-YP-LTEGEIRLDGRPLSSLSHSVLRQGVAMV 420 (592)
T ss_pred eC-------CCCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcc-cC-CCCceEEECCEEhhhCCHHHHHhheEEE
Confidence 93 235699999999999999999999999999999999985 44 458999999999853 578999999
Q ss_pred ecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcC-------CCccccccccCccccCCCHHHHHHHHHH
Q 004537 235 TQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG-------LERCQDTMIGGSFVRGVSGGERKRVCIG 307 (746)
Q Consensus 235 ~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~~~vg~~~~~~LSGGerqRv~IA 307 (746)
+||+.+|+. |++|||.++. ..++ ++++++++.+| |++..||.+|+. ...||||||||++||
T Consensus 421 ~Q~~~lF~~-Ti~~NI~~~~------~~~d----~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~-g~~LSGGqrQRialA 488 (592)
T PRK10790 421 QQDPVVLAD-TFLANVTLGR------DISE----EQVWQALETVQLAELARSLPDGLYTPLGEQ-GNNLSVGQKQLLALA 488 (592)
T ss_pred ccCCccccc-hHHHHHHhCC------CCCH----HHHHHHHHHcCcHHHHHhccccccccccCC-CCCCCHHHHHHHHHH
Confidence 999999986 9999999863 1222 23444555444 456788988864 456999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHHH
Q 004537 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (746)
Q Consensus 308 ~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 385 (746)
|||+++|+||+||||||+||+.++..+.+.|+++.+ ++|+|++||+++ ....||+|++|++|++++.|+++|+++
T Consensus 489 RaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~-~~tvIivtHr~~--~l~~~D~ii~l~~G~i~~~G~~~~L~~ 563 (592)
T PRK10790 489 RVLVQTPQILILDEATANIDSGTEQAIQQALAAVRE-HTTLVVIAHRLS--TIVEADTILVLHRGQAVEQGTHQQLLA 563 (592)
T ss_pred HHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecchH--HHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999999999999999999999865 799999999985 467799999999999999999999874
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-44 Score=366.14 Aligned_cols=210 Identities=31% Similarity=0.540 Sum_probs=181.3
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh--hc
Q 004537 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SL 227 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--~~ 227 (746)
++++|++++| +++++|+|+||++++||+++|+||||||||||+++|+|.. ++.+|+|.++|+++.. ..
T Consensus 1 l~~~~l~~~~--------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~--~p~~G~i~~~g~~~~~~~~~ 70 (213)
T cd03259 1 LELKGLSKTY--------GSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLE--RPDSGEILIDGRDVTGVPPE 70 (213)
T ss_pred CeeeeeEEEe--------CCeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC--CCCCeEEEECCEEcCcCchh
Confidence 4689999998 2357999999999999999999999999999999999964 3568999999998753 23
Q ss_pred cCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHH
Q 004537 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (746)
Q Consensus 228 ~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA 307 (746)
++.++|++|++.+++.+||+||+.++.... ........++++++++.++|.+..++. +..||||||||++||
T Consensus 71 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrl~la 142 (213)
T cd03259 71 RRNIGMVFQDYALFPHLTVAENIAFGLKLR---GVPKAEIRARVRELLELVGLEGLLNRY-----PHELSGGQQQRVALA 142 (213)
T ss_pred hccEEEEcCchhhccCCcHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhcC-----hhhCCHHHHHHHHHH
Confidence 567999999999998899999999875422 123344556788999999998766654 468999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEec
Q 004537 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (746)
Q Consensus 308 ~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G 378 (746)
|+|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.+.||++++|++|++++.|
T Consensus 143 ~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 143 RALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQE-EALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999999999999999764 899999999975 567889999999999998765
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-44 Score=367.28 Aligned_cols=208 Identities=27% Similarity=0.477 Sum_probs=179.1
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh----
Q 004537 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (746)
++++|++++|. .+.+.+|+|+|+++++||+++|+||||||||||+|+|+|.. ++.+|+|.++|+++..
T Consensus 2 l~~~~l~~~~~------~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~--~~~~G~i~~~g~~~~~~~~~ 73 (216)
T TIGR00960 2 IRFEQVSKAYP------GGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIE--KPTRGKIRFNGQDLTRLRGR 73 (216)
T ss_pred eEEEEEEEEec------CCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC--CCCceEEEECCEehhhcChh
Confidence 78999999982 12246999999999999999999999999999999999954 3468999999998742
Q ss_pred ---hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHH
Q 004537 226 ---SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (746)
Q Consensus 226 ---~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerq 302 (746)
.+++.++|++|++.+++.+||+||+.++.... ....++.++++.++++.+||++..++. +.+|||||||
T Consensus 74 ~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~q 145 (216)
T TIGR00960 74 EIPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRII---GVPPRDANERVSAALEKVGLEGKAHAL-----PMQLSGGEQQ 145 (216)
T ss_pred HHHHHHHhceEEecCccccccccHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCC-----hhhCCHHHHH
Confidence 24578999999999999899999999875432 123344556788999999998766654 4689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeE
Q 004537 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (746)
Q Consensus 303 Rv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~i 374 (746)
||+|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+.+.||++++|++|++
T Consensus 146 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 146 RVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDIN-LVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999999999999999877999999999975 56678999999999974
|
|
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-44 Score=370.38 Aligned_cols=220 Identities=25% Similarity=0.460 Sum_probs=187.2
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh--h
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--S 226 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--~ 226 (746)
.++++||+++| +++.+|+|+|+++++||+++|+||||||||||+++|+|.. ++.+|+|.++|+++.. .
T Consensus 2 ~l~~~~l~~~~--------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~--~~~~G~i~~~g~~~~~~~~ 71 (239)
T cd03296 2 SIEVRNVSKRF--------GDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLE--RPDSGTILFGGEDATDVPV 71 (239)
T ss_pred EEEEEeEEEEE--------CCEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC--CCCceEEEECCEECCcCCc
Confidence 48899999998 2357999999999999999999999999999999999954 3468999999998743 2
Q ss_pred ccCcEEEEecCCcCCCCCCHHHHHHHHHhccCC-CCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHH
Q 004537 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLP-NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (746)
Q Consensus 227 ~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~ 305 (746)
.++.++||+|++.+++.+||+||+.++...... ......+..++++++++.+||.+..++. +.+|||||||||+
T Consensus 72 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~ 146 (239)
T cd03296 72 QERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRY-----PAQLSGGQRQRVA 146 (239)
T ss_pred cccceEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcC-----hhhCCHHHHHHHH
Confidence 356799999999999889999999987543211 0012333456688899999998766654 4689999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHH
Q 004537 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (746)
Q Consensus 306 IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (746)
|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.+.||++++|++|++++.|+++++.
T Consensus 147 la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 225 (239)
T cd03296 147 LARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQE-EALEVADRVVVMNKGRIEQVGTPDEVY 225 (239)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCeEEEecCHHHHh
Confidence 999999999999999999999999999999999999875 899999999975 467889999999999999999988763
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-45 Score=430.55 Aligned_cols=354 Identities=21% Similarity=0.289 Sum_probs=249.6
Q ss_pred HHHHHHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeeccccccceecchhchhhh
Q 004537 11 ARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSGAA 90 (746)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 90 (746)
.+..+++..+..+...+...+.+++|+++.+....+++.+..........+.....+...........-..+.-+..|+.
T Consensus 182 ~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 261 (571)
T TIGR02203 182 SKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSISSPITQLIASLALAVVLFIALF 261 (571)
T ss_pred HHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445666777778899999999999999998888888766654433222111111111111111122223444567888
Q ss_pred hhhhcccccchhhhhccccc----ChhhhccCCC------CCCCCCcccccccCCCCCCCCCCCCCCceEEEEeEEEEEe
Q 004537 91 LSRASSASLGLSFSFTGFTM----PPDEIADSKP------FSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFTDVTYKVI 160 (746)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~nvs~~~~ 160 (746)
++..|.++.|.+..+..+.. |...+..... ....++.+.+...+...............++++||+|+|+
T Consensus 262 ~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~ 341 (571)
T TIGR02203 262 QAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDTGTRAIERARGDVEFRNVTFRYP 341 (571)
T ss_pred HHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCeEEEEEEEEEcC
Confidence 88889999998877775432 2222211100 0011111111111110000000011123599999999983
Q ss_pred eccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh----hccCcEEEEec
Q 004537 161 LKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQ 236 (746)
Q Consensus 161 ~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~----~~~~~i~yv~Q 236 (746)
..++++|+|+|+++++||.++|+|+||||||||+|+|+|.. + +.+|+|.+||+++++ .++++++||+|
T Consensus 342 ------~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~-~-~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q 413 (571)
T TIGR02203 342 ------GRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFY-E-PDSGQILLDGHDLADYTLASLRRQVALVSQ 413 (571)
T ss_pred ------CCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhcc-C-CCCCeEEECCEeHHhcCHHHHHhhceEEcc
Confidence 22457999999999999999999999999999999999954 3 458999999998752 56788999999
Q ss_pred CCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcC-------CCccccccccCccccCCCHHHHHHHHHHHH
Q 004537 237 DDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG-------LERCQDTMIGGSFVRGVSGGERKRVCIGNE 309 (746)
Q Consensus 237 ~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~~~vg~~~~~~LSGGerqRv~IA~a 309 (746)
++.+|+. |++|||.++. +++.++ ++++++++.+| |++..||.+|+. .+.||||||||++|||+
T Consensus 414 ~~~lf~~-Ti~~Ni~~~~----~~~~~~----~~i~~~l~~~~l~~~i~~lp~gldt~i~~~-g~~LSgGqrQRiaLARa 483 (571)
T TIGR02203 414 DVVLFND-TIANNIAYGR----TEQADR----AEIERALAAAYAQDFVDKLPLGLDTPIGEN-GVLLSGGQRQRLAIARA 483 (571)
T ss_pred Ccccccc-cHHHHHhcCC----CCCCCH----HHHHHHHHHcChHHHHHhCcCcccceecCC-CCcCCHHHHHHHHHHHH
Confidence 9999975 9999999763 112232 23344444443 456788999865 45799999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHHH
Q 004537 310 IIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (746)
Q Consensus 310 L~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 385 (746)
++++|+|++||||||+||+.++..+++.|+++.+ ++|+|++||++. ..+.||+|++|++|+++..|+++++++
T Consensus 484 ll~~~~illLDEpts~LD~~~~~~i~~~L~~~~~-~~tiIiitH~~~--~~~~~D~ii~l~~g~i~~~g~~~~l~~ 556 (571)
T TIGR02203 484 LLKDAPILILDEATSALDNESERLVQAALERLMQ-GRTTLVIAHRLS--TIEKADRIVVMDDGRIVERGTHNELLA 556 (571)
T ss_pred HhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhC-CCEEEEEehhhH--HHHhCCEEEEEeCCEEEeeCCHHHHHH
Confidence 9999999999999999999999999999999854 799999999975 568899999999999999999999863
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-43 Score=378.94 Aligned_cols=237 Identities=30% Similarity=0.438 Sum_probs=196.1
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh----
Q 004537 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (746)
|+++||+++|..+ ....+.+|+|||++|++||+++|+||||||||||+++|+|.. ++.+|+|+++|.++..
T Consensus 2 i~~~~v~~~y~~~---~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~--~p~~G~i~~~g~~i~~~~~~ 76 (288)
T PRK13643 2 IKFEKVNYTYQPN---SPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLL--QPTEGKVTVGDIVVSSTSKQ 76 (288)
T ss_pred EEEEEEEEEeCCC---CcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCC--CCCCcEEEECCEECcccccc
Confidence 7899999999311 011246999999999999999999999999999999999964 3468999999998741
Q ss_pred ----hccCcEEEEecCC--cCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCC-ccccccccCccccCCCH
Q 004537 226 ----SLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVSG 298 (746)
Q Consensus 226 ----~~~~~i~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSG 298 (746)
..++.++||+|++ .+++ .||.||+.|+.... ..++++.++++.++++.+||. +..++ .++.|||
T Consensus 77 ~~~~~~~~~ig~v~q~~~~~l~~-~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~-----~~~~LSg 147 (288)
T PRK13643 77 KEIKPVRKKVGVVFQFPESQLFE-ETVLKDVAFGPQNF---GIPKEKAEKIAAEKLEMVGLADEFWEK-----SPFELSG 147 (288)
T ss_pred ccHHHHHhhEEEEecCcchhccc-chHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCChhhccC-----CcccCCH
Confidence 3467899999986 5675 69999999876432 234556677889999999996 34443 4578999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEec
Q 004537 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (746)
Q Consensus 299 GerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G 378 (746)
|||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. ++.+.||+|++|++|++++.|
T Consensus 148 GqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~-~~~~~~dri~~l~~G~i~~~g 226 (288)
T PRK13643 148 GQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMD-DVADYADYVYLLEKGHIISCG 226 (288)
T ss_pred HHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEEC
Confidence 9999999999999999999999999999999999999999999877999999999975 567889999999999999999
Q ss_pred CHHHHHH---HHHhcCCCCCCCCChH
Q 004537 379 KASEAMA---YFSSIGCSPQIAMNPA 401 (746)
Q Consensus 379 ~~~~~~~---~f~~~G~~~~~~~npa 401 (746)
+++++.. .+...|+.+|.....+
T Consensus 227 ~~~~~~~~~~~~~~~~~~~p~~~~~~ 252 (288)
T PRK13643 227 TPSDVFQEVDFLKAHELGVPKATHFA 252 (288)
T ss_pred CHHHHHcCHHHHHHcCCCCChHHHHH
Confidence 9998743 3456677766543333
|
|
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-43 Score=391.73 Aligned_cols=218 Identities=28% Similarity=0.485 Sum_probs=191.8
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh--h
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--S 226 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--~ 226 (746)
.|+++|++++| +++.+|+|+|++|++||+++|+||||||||||||+|+|.. ++.+|+|.++|+++.. .
T Consensus 3 ~l~i~~l~~~~--------~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~--~p~~G~I~~~g~~i~~~~~ 72 (369)
T PRK11000 3 SVTLRNVTKAY--------GDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLE--DITSGDLFIGEKRMNDVPP 72 (369)
T ss_pred EEEEEEEEEEe--------CCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC--CCCceEEEECCEECCCCCH
Confidence 48999999998 3457999999999999999999999999999999999954 3468999999998753 2
Q ss_pred ccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHH
Q 004537 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (746)
Q Consensus 227 ~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~I 306 (746)
.++.|+||+|++.+|+++||+||+.|+...+ ..+..+.+++++++++.+||.+..++. +.+|||||||||+|
T Consensus 73 ~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~lgL~~~~~~~-----~~~LSgGq~QRvaL 144 (369)
T PRK11000 73 AERGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEEINQRVNQVAEVLQLAHLLDRK-----PKALSGGQRQRVAI 144 (369)
T ss_pred hHCCEEEEeCCcccCCCCCHHHHHHhHHhhc---CCCHHHHHHHHHHHHHHcCChhhhcCC-----hhhCCHHHHHHHHH
Confidence 3567999999999999999999999986533 234455567889999999998776654 46899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHHH
Q 004537 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (746)
Q Consensus 307 A~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 385 (746)
||||+.+|++|||||||+|||+.++..+.+.|+++.++ |+|+|++||++. ++..+||+|++|++|++++.|+++++..
T Consensus 145 AraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~-~~~~~~d~i~vl~~G~i~~~g~~~~i~~ 223 (369)
T PRK11000 145 GRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDAGRVAQVGKPLELYH 223 (369)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999999999765 899999999975 5778999999999999999999988753
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-44 Score=368.11 Aligned_cols=216 Identities=27% Similarity=0.509 Sum_probs=186.8
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh----
Q 004537 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (746)
++++||+++| +++.+|+|+||++++||+++|+||||||||||+++|+|.. ++.+|+|.++|+++..
T Consensus 1 l~~~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~--~p~~G~i~~~g~~~~~~~~~ 70 (232)
T cd03218 1 LRAENLSKRY--------GKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLV--KPDSGKILLDGQDITKLPMH 70 (232)
T ss_pred CeEEEEEEEe--------CCEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCC--CCCCcEEEECCEecccCCHh
Confidence 4789999998 3457999999999999999999999999999999999964 3568999999998642
Q ss_pred h-ccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHH
Q 004537 226 S-LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (746)
Q Consensus 226 ~-~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv 304 (746)
. .++.++|++|++.+++.+||+||+.+....+. ....+..++++++++.+++.+..++. ++.||||||||+
T Consensus 71 ~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl 142 (232)
T cd03218 71 KRARLGIGYLPQEASIFRKLTVEENILAVLEIRG---LSKKEREEKLEELLEEFHITHLRKSK-----ASSLSGGERRRV 142 (232)
T ss_pred HHHhccEEEecCCccccccCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCChhhhhCC-----hhhCCHHHHHHH
Confidence 1 24579999999999999999999998653321 23344556788999999998766654 468999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHH
Q 004537 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (746)
Q Consensus 305 ~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (746)
+|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|++. ++.+.||++++|++|++++.|+++++.
T Consensus 143 ~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 221 (232)
T cd03218 143 EIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVR-ETLSITDRAYIIYEGKVLAEGTPEEIA 221 (232)
T ss_pred HHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCeEEEEeCHHHhh
Confidence 9999999999999999999999999999999999999877999999999975 578899999999999999999988763
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-43 Score=365.12 Aligned_cols=216 Identities=30% Similarity=0.474 Sum_probs=183.7
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCChhccC
Q 004537 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKS 229 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~ 229 (746)
++++|++++|... ...+++|+|+|++|++||+++|+||||||||||+|+|+|.. ++.+|+|.++|+++. ..++
T Consensus 1 l~~~~l~~~~~~~----~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~--~~~~G~i~~~g~~~~-~~~~ 73 (220)
T cd03293 1 LEVRNVSKTYGGG----GGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLE--RPTSGEVLVDGEPVT-GPGP 73 (220)
T ss_pred CeEEEEEEEcCCC----CcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCC--CCCceEEEECCEECc-cccC
Confidence 4689999998210 01157999999999999999999999999999999999964 246899999999875 3467
Q ss_pred cEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHHHH
Q 004537 230 KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNE 309 (746)
Q Consensus 230 ~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~a 309 (746)
.++||+|++.+++.+||+||+.+....+ ........++++++++.+||.+..++. ++.||||||||++|||+
T Consensus 74 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrl~la~a 145 (220)
T cd03293 74 DRGYVFQQDALLPWLTVLDNVALGLELQ---GVPKAEARERAEELLELVGLSGFENAY-----PHQLSGGMRQRVALARA 145 (220)
T ss_pred cEEEEecccccccCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCC-----cccCCHHHHHHHHHHHH
Confidence 8999999999999899999999875432 123344456788999999998766654 46899999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCChHHHhccCEEEEEe--CCeEEEecCHH
Q 004537 310 IIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLG--KGSLLYFGKAS 381 (746)
Q Consensus 310 L~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~-~g~Tvi~~~H~~~~~i~~~~D~i~vL~--~G~iv~~G~~~ 381 (746)
|+.+|++|||||||+|||+.++..+.+.|+++.+ .|+|||++||++. ++.+.||++++|+ +|++++.++.+
T Consensus 146 l~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~~ 219 (220)
T cd03293 146 LAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDID-EAVFLADRVVVLSARPGRIVAEVEVD 219 (220)
T ss_pred HHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEECCCCEEEEEEEec
Confidence 9999999999999999999999999999999865 4899999999975 4678899999999 79999988753
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-44 Score=368.34 Aligned_cols=220 Identities=27% Similarity=0.426 Sum_probs=187.8
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh----
Q 004537 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (746)
|+++|++++|..+ .+.+++|+|+|++|++||+++|+||||||||||+++|+|.. ++.+|+|.++|+++..
T Consensus 2 i~~~~l~~~~~~~----~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~--~~~~G~i~~~g~~~~~~~~~ 75 (233)
T cd03258 2 IELKNVSKVFGDT----GGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLE--RPTSGSVLVDGTDLTLLSGK 75 (233)
T ss_pred eEEecceEEccCC----CCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC--CCCCceEEECCEEcccCCHH
Confidence 7899999998210 01137999999999999999999999999999999999964 3568999999998742
Q ss_pred ---hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHH
Q 004537 226 ---SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (746)
Q Consensus 226 ---~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerq 302 (746)
..++.++|++|++.+++.+|++||+.+....+ ........+.+.++++.++|++..+.. +..|||||||
T Consensus 76 ~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~q 147 (233)
T cd03258 76 ELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIA---GVPKAEIEERVLELLELVGLEDKADAY-----PAQLSGGQKQ 147 (233)
T ss_pred HHHHHHhheEEEccCcccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhhhhcC-----hhhCCHHHHH
Confidence 23577999999999999899999999875432 123444556788999999998766654 4689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHH
Q 004537 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 381 (746)
Q Consensus 303 Rv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 381 (746)
|++|||+|+.+|+++||||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+.||++++|++|++++.|+++
T Consensus 148 rv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~ 226 (233)
T cd03258 148 RVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEME-VVKRICDRVAVMEKGEVVEEGTVE 226 (233)
T ss_pred HHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEecCHH
Confidence 999999999999999999999999999999999999999775 899999999975 577889999999999999999988
Q ss_pred HHH
Q 004537 382 EAM 384 (746)
Q Consensus 382 ~~~ 384 (746)
++.
T Consensus 227 ~~~ 229 (233)
T cd03258 227 EVF 229 (233)
T ss_pred HHh
Confidence 764
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-44 Score=363.41 Aligned_cols=210 Identities=30% Similarity=0.565 Sum_probs=183.1
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCChhccC
Q 004537 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKS 229 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~ 229 (746)
++++|+++.| +++.+|+|+|+++++||+++|+||||||||||+++|+|.. ++.+|+|.++|+++....++
T Consensus 1 l~~~~l~~~~--------~~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~--~~~~G~i~~~g~~~~~~~~~ 70 (210)
T cd03269 1 LEVENVTKRF--------GRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGII--LPDSGEVLFDGKPLDIAARN 70 (210)
T ss_pred CEEEEEEEEE--------CCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC--CCCceEEEECCCchhHHHHc
Confidence 4789999988 2456999999999999999999999999999999999954 35689999999987655677
Q ss_pred cEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHHHH
Q 004537 230 KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNE 309 (746)
Q Consensus 230 ~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~a 309 (746)
.++|++|++.+++.+||+||+.+....+ ..+..+..++++++++.+|+++..++. +++||||||||++|||+
T Consensus 71 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~la~a 142 (210)
T cd03269 71 RIGYLPEERGLYPKMKVIDQLVYLAQLK---GLKKEEARRRIDEWLERLELSEYANKR-----VEELSKGNQQKVQFIAA 142 (210)
T ss_pred cEEEeccCCcCCcCCcHHHHHHHHHHHc---CCChHHHHHHHHHHHHHcCChHHHhCc-----HhhCCHHHHHHHHHHHH
Confidence 8999999999999899999999875433 123344556788999999998766654 46899999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEec
Q 004537 310 IIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (746)
Q Consensus 310 L~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G 378 (746)
|+.+|++++|||||+|||+.++..+.+.|++++++|+|||+++|++. ++.+.||++++|++|++++.|
T Consensus 143 l~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 143 VIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQME-LVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhhhEEEEEeCCEEEecC
Confidence 99999999999999999999999999999999877899999999975 466889999999999998765
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-45 Score=427.98 Aligned_cols=355 Identities=22% Similarity=0.301 Sum_probs=246.5
Q ss_pred hHHHHHHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeeccccccceecchhchhh
Q 004537 10 LARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSGA 89 (746)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 89 (746)
..+..+++..+.++...+.....+++|.++.+..+.+++.+...+..+...+.....+.....+..+..-..+.-+..|+
T Consensus 183 ~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 262 (588)
T PRK13657 183 GQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLSWWALASVLNRAASTITMLAILVLGA 262 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445667788888999999999999999998887777776555443332111111111111111222222344455788
Q ss_pred hhhhhcccccchhhhhcccc----cChhhhccCCC------CCCCCCcccccccCCC-C-CCCCCCCCCCceEEEEeEEE
Q 004537 90 ALSRASSASLGLSFSFTGFT----MPPDEIADSKP------FSDDDIPEDIEAGTRE-R-PKFQTEPTLPIYLKFTDVTY 157 (746)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~------~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~l~~~nvs~ 157 (746)
.++..|.++.|....+..+. .|...+..... ....++.+.++..+.. . +.....+.....++++||+|
T Consensus 263 ~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf 342 (588)
T PRK13657 263 ALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDVRDPPGAIDLGRVKGAVEFDDVSF 342 (588)
T ss_pred HHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCCCcCCCCCeEEEEEEEE
Confidence 88888888888887665432 22222211000 0000000001100000 0 00000111123699999999
Q ss_pred EEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh----hccCcEEE
Q 004537 158 KVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGF 233 (746)
Q Consensus 158 ~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~----~~~~~i~y 233 (746)
+|+ +++++|+|+|++++|||.++|+|+||||||||+|+|+|.. + +.+|+|.+||+++.+ .++++|+|
T Consensus 343 ~y~-------~~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~-~-p~~G~I~i~g~~i~~~~~~~~r~~i~~ 413 (588)
T PRK13657 343 SYD-------NSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVF-D-PQSGRILIDGTDIRTVTRASLRRNIAV 413 (588)
T ss_pred EeC-------CCCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCc-C-CCCCEEEECCEEhhhCCHHHHHhheEE
Confidence 993 2246999999999999999999999999999999999854 3 458999999998863 56889999
Q ss_pred EecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHH-----HHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHHH
Q 004537 234 VTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEK-----RAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGN 308 (746)
Q Consensus 234 v~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~-----~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~ 308 (746)
|+|++.+|+ .|++|||.++. + +.++++..+ ..++.++. +++..||.+|+. .+.||||||||++|||
T Consensus 414 v~Q~~~lf~-~Ti~~Ni~~~~----~-~~~d~~i~~al~~~~l~~~i~~--lp~gldt~i~~~-g~~LSgGq~QRialAR 484 (588)
T PRK13657 414 VFQDAGLFN-RSIEDNIRVGR----P-DATDEEMRAAAERAQAHDFIER--KPDGYDTVVGER-GRQLSGGERQRLAIAR 484 (588)
T ss_pred EecCccccc-ccHHHHHhcCC----C-CCCHHHHHHHHHHhCHHHHHHh--CcccccchhcCC-CCCCCHHHHHHHHHHH
Confidence 999999997 49999999862 1 123222221 12233333 466788888764 4569999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHHH
Q 004537 309 EIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (746)
Q Consensus 309 aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 385 (746)
+|+++|+|++||||||+||+.++..+++.|+++.+ ++|+|++||+++ ..+.||+|++|++|++++.|+++++++
T Consensus 485 all~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~-~~tvIiitHr~~--~~~~~D~ii~l~~G~i~~~g~~~~l~~ 558 (588)
T PRK13657 485 ALLKDPPILILDEATSALDVETEAKVKAALDELMK-GRTTFIIAHRLS--TVRNADRILVFDNGRVVESGSFDELVA 558 (588)
T ss_pred HHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEEecHH--HHHhCCEEEEEECCEEEEeCCHHHHHH
Confidence 99999999999999999999999999999998754 899999999975 468899999999999999999999864
|
|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-44 Score=368.02 Aligned_cols=217 Identities=26% Similarity=0.441 Sum_probs=183.3
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCC---CCCccEEEECCEeCCh-
Q 004537 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME---PTVGGSITYNDHPYSK- 225 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~---~~~~G~I~~~G~~~~~- 225 (746)
|+++||+++| +++++|+|+||++++||+++|+||||||||||+++|+|.... ++.+|+|.++|+++..
T Consensus 1 i~~~~l~~~~--------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~ 72 (227)
T cd03260 1 IELRDLNVYY--------GDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDL 72 (227)
T ss_pred CEEEEEEEEc--------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhc
Confidence 4789999988 345799999999999999999999999999999999996511 3568999999998642
Q ss_pred -----hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHH
Q 004537 226 -----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGE 300 (746)
Q Consensus 226 -----~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGe 300 (746)
..++.++|++|++.++ .+||+||+.++..... .....+.++++.++++.+||.+..+.... +.+|||||
T Consensus 73 ~~~~~~~~~~i~~~~q~~~~~-~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~~~LSgG~ 146 (227)
T cd03260 73 DVDVLELRRRVGMVFQKPNPF-PGSIYDNVAYGLRLHG--IKLKEELDERVEEALRKAALWDEVKDRLH---ALGLSGGQ 146 (227)
T ss_pred chHHHHHHhhEEEEecCchhc-cccHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHcCCChHHhccCC---cccCCHHH
Confidence 2457899999999888 7899999998754321 11222345678899999999876554320 36899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCH
Q 004537 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380 (746)
Q Consensus 301 rqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~ 380 (746)
|||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++ +|||++||++. .+.+.||++++|++|++++.|++
T Consensus 147 ~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~ 224 (227)
T cd03260 147 QQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQ-QAARVADRTAFLLNGRLVEFGPT 224 (227)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccHH-HHHHhCCEEEEEeCCEEEEecCc
Confidence 99999999999999999999999999999999999999999876 99999999975 56788999999999999999987
Q ss_pred HH
Q 004537 381 SE 382 (746)
Q Consensus 381 ~~ 382 (746)
++
T Consensus 225 ~~ 226 (227)
T cd03260 225 EQ 226 (227)
T ss_pred cc
Confidence 65
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-43 Score=364.59 Aligned_cols=216 Identities=29% Similarity=0.492 Sum_probs=185.7
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---h
Q 004537 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---S 226 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---~ 226 (746)
|+++||+++|. ..++++|+|+|+++++||+++|+||||||||||+++|+|.. ++.+|+|.++|.++.. .
T Consensus 1 l~~~~l~~~~~------~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~--~~~~G~i~~~g~~~~~~~~~ 72 (220)
T cd03263 1 LQIRNLTKTYK------KGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGEL--RPTSGTAYINGYSIRTDRKA 72 (220)
T ss_pred CEEEeeEEEeC------CCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC--CCCCcEEEECCEecccchHH
Confidence 47899999982 11257999999999999999999999999999999999954 3468999999998742 3
Q ss_pred ccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHH
Q 004537 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (746)
Q Consensus 227 ~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~I 306 (746)
++++++||+|++.+++.+||+||+.+...... ....+..++++++++.++|.+..++. +..||||||||++|
T Consensus 73 ~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~l 144 (220)
T cd03263 73 ARQSLGYCPQFDALFDELTVREHLRFYARLKG---LPKSEIKEEVELLLRVLGLTDKANKR-----ARTLSGGMKRKLSL 144 (220)
T ss_pred HhhhEEEecCcCCccccCCHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHHhCh-----hhhCCHHHHHHHHH
Confidence 56779999999999988999999998754321 23334456788999999998776654 46899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHH
Q 004537 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (746)
Q Consensus 307 A~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 383 (746)
||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|++. .+.+.||++++|++|++++.|+++++
T Consensus 145 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 145 AIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK-GRSIILTTHSMD-EAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred HHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEcCCHH-HHHHhcCEEEEEECCEEEecCCHHHc
Confidence 9999999999999999999999999999999999876 699999999976 46678999999999999999998764
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-43 Score=376.59 Aligned_cols=232 Identities=27% Similarity=0.466 Sum_probs=191.7
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (746)
.|+++||++.|..+ ....+++|+||||+|++||+++|+||||||||||+++|+|.+ ++.+|+|.++|+++..
T Consensus 2 ~l~~~~l~~~y~~~---~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~--~p~~G~i~~~g~~~~~~~~ 76 (287)
T PRK13637 2 SIKIENLTHIYMEG---TPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLL--KPTSGKIIIDGVDITDKKV 76 (287)
T ss_pred EEEEEEEEEECCCC---CccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC--CCCccEEEECCEECCCcCc
Confidence 38899999998311 011257999999999999999999999999999999999964 3468999999998742
Q ss_pred ---hccCcEEEEecCC--cCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCC--ccccccccCccccCCCH
Q 004537 226 ---SLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE--RCQDTMIGGSFVRGVSG 298 (746)
Q Consensus 226 ---~~~~~i~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~--~~~~~~vg~~~~~~LSG 298 (746)
..+++||||+|++ .++ ..||+||+.++.... ..++++..+++.++++.+||. +..++ .++.|||
T Consensus 77 ~~~~~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~~~LSg 147 (287)
T PRK13637 77 KLSDIRKKVGLVFQYPEYQLF-EETIEKDIAFGPINL---GLSEEEIENRVKRAMNIVGLDYEDYKDK-----SPFELSG 147 (287)
T ss_pred cHHHHhhceEEEecCchhccc-cccHHHHHHhHHHHC---CCCHHHHHHHHHHHHHHcCCCchhhccC-----CcccCCH
Confidence 3467899999997 345 479999999875432 245566667889999999996 44454 4578999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEe
Q 004537 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (746)
Q Consensus 299 GerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~ 377 (746)
|||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+.||+|++|++|++++.
T Consensus 148 Gq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~drv~~l~~G~i~~~ 226 (287)
T PRK13637 148 GQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSME-DVAKLADRIIVMNKGKCELQ 226 (287)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999999865 899999999975 46688999999999999999
Q ss_pred cCHHHHHH---HHHhcCCCCC
Q 004537 378 GKASEAMA---YFSSIGCSPQ 395 (746)
Q Consensus 378 G~~~~~~~---~f~~~G~~~~ 395 (746)
|+++++.+ .+...|+.+|
T Consensus 227 g~~~~~~~~~~~~~~~~~~~~ 247 (287)
T PRK13637 227 GTPREVFKEVETLESIGLAVP 247 (287)
T ss_pred CCHHHHHhCHHHHHHcCCCCC
Confidence 99988753 2334455443
|
|
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-43 Score=380.13 Aligned_cols=217 Identities=26% Similarity=0.471 Sum_probs=191.7
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (746)
.++++|++++| +++.+|+|+||++++||+++|+||||||||||+|+|+|.. ++++|+|.++|.++..
T Consensus 2 ~l~~~~l~~~~--------~~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~--~~~~G~i~i~g~~~~~~~~ 71 (301)
T TIGR03522 2 SIRVSSLTKLY--------GTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYL--PPDSGSVQVCGEDVLQNPK 71 (301)
T ss_pred EEEEEEEEEEE--------CCEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCC--CCCceEEEECCEEcccChH
Confidence 48899999998 3467999999999999999999999999999999999954 3568999999998753
Q ss_pred hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHH
Q 004537 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (746)
Q Consensus 226 ~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~ 305 (746)
..++.+||++|++.+++.+||.||+.+.+.++. .+.++..++++++++.+||.+..++.+ +.||||||||++
T Consensus 72 ~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrv~ 143 (301)
T TIGR03522 72 EVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYG---MKGQLLKQRVEEMIELVGLRPEQHKKI-----GQLSKGYRQRVG 143 (301)
T ss_pred HHHhceEEecCCCCCCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCCchHhcCch-----hhCCHHHHHHHH
Confidence 356789999999999999999999998765431 234445567889999999998777654 689999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHHH
Q 004537 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (746)
Q Consensus 306 IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 385 (746)
||+||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++. ++.++||+|++|++|++++.|+++++.+
T Consensus 144 la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiii~sH~l~-~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 221 (301)
T TIGR03522 144 LAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGK-DKTIILSTHIMQ-EVEAICDRVIIINKGKIVADKKLDELSA 221 (301)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHHH
Confidence 99999999999999999999999999999999999865 799999999975 5788999999999999999999999765
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-43 Score=369.13 Aligned_cols=220 Identities=29% Similarity=0.486 Sum_probs=184.4
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh----
Q 004537 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (746)
++++||+++|. +++.+|+|+|+++++||+++|+||||||||||+++|+|.. ++.+|+|.++|+++..
T Consensus 1 l~~~~l~~~~~-------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~--~~~~G~i~~~g~~~~~~~~~ 71 (241)
T cd03256 1 IEVENLSKTYP-------NGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLV--EPTSGSVLIDGTDINKLKGK 71 (241)
T ss_pred CEEeeEEEecC-------CccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCc--CCCCceEEECCEeccccCHh
Confidence 46899999882 1257999999999999999999999999999999999954 3468999999998742
Q ss_pred ---hccCcEEEEecCCcCCCCCCHHHHHHHHHhccC-----CCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCC
Q 004537 226 ---SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRL-----PNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVS 297 (746)
Q Consensus 226 ---~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~-----~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS 297 (746)
..++.++|++|++.+++.+||+||+.++..... ..........+++.++++.++|.+..++. +.+||
T Consensus 72 ~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS 146 (241)
T cd03256 72 ALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQR-----ADQLS 146 (241)
T ss_pred HHHHHHhccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCC-----cccCC
Confidence 245679999999999998999999987642110 00011223456788899999998665543 46899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEE
Q 004537 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (746)
Q Consensus 298 GGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~ 376 (746)
|||||||+|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+.||++++|++|++++
T Consensus 147 ~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l~~G~i~~ 225 (241)
T cd03256 147 GGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVD-LAREYADRIVGLKDGRIVF 225 (241)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEe
Confidence 99999999999999999999999999999999999999999999764 899999999976 4777999999999999999
Q ss_pred ecCHHHHH
Q 004537 377 FGKASEAM 384 (746)
Q Consensus 377 ~G~~~~~~ 384 (746)
.|+++++.
T Consensus 226 ~~~~~~~~ 233 (241)
T cd03256 226 DGPPAELT 233 (241)
T ss_pred ecCHHHhh
Confidence 99988753
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-43 Score=361.58 Aligned_cols=210 Identities=27% Similarity=0.508 Sum_probs=181.7
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh--hc
Q 004537 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SL 227 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--~~ 227 (746)
|+++|++++| +++++|+|+|++|++||+++|+||||||||||+++|+|.. ++.+|+|.++|.++.. ..
T Consensus 1 i~~~~l~~~~--------~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~--~~~~G~v~~~g~~~~~~~~~ 70 (213)
T cd03301 1 VELENVTKRF--------GNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLE--EPTSGRIYIGGRDVTDLPPK 70 (213)
T ss_pred CEEEeeEEEE--------CCeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC--CCCceEEEECCEECCcCCcc
Confidence 4789999988 2357999999999999999999999999999999999964 3468999999998743 23
Q ss_pred cCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHH
Q 004537 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (746)
Q Consensus 228 ~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA 307 (746)
++.++|++|++.+++.+||+||+.+..... .....+.+++++++++.+|+.+..+.. ++.||||||||++||
T Consensus 71 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qr~~la 142 (213)
T cd03301 71 DRDIAMVFQNYALYPHMTVYDNIAFGLKLR---KVPKDEIDERVREVAELLQIEHLLDRK-----PKQLSGGQRQRVALG 142 (213)
T ss_pred cceEEEEecChhhccCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHHHHhCC-----hhhCCHHHHHHHHHH
Confidence 467999999999998899999999875432 123444556788999999998776654 468999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEec
Q 004537 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (746)
Q Consensus 308 ~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G 378 (746)
|+|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+.||++++|++|++++.|
T Consensus 143 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 143 RAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQV-EAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEECCEEEecC
Confidence 9999999999999999999999999999999999864 899999999975 567889999999999999876
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-43 Score=369.11 Aligned_cols=218 Identities=30% Similarity=0.503 Sum_probs=187.6
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (746)
.++++||+++| +++.+|+|+||++++||+++|+||||||||||+++|+|.. ++.+|+|.++|+++..
T Consensus 3 ~l~~~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~--~~~~G~i~~~g~~~~~~~~ 72 (250)
T PRK11264 3 AIEVKNLVKKF--------HGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLE--QPEAGTIRVGDITIDTARS 72 (250)
T ss_pred cEEEeceEEEE--------CCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCC--CCCCeEEEECCEEcccccc
Confidence 48999999998 2356999999999999999999999999999999999964 3468999999988641
Q ss_pred ---------hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCC
Q 004537 226 ---------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGV 296 (746)
Q Consensus 226 ---------~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~L 296 (746)
..++.++||+|++.+++.+||+||+.++..... ....+...+++.++++.+||.+..++. ++.|
T Consensus 73 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~L 145 (250)
T PRK11264 73 LSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVK--GEPKEEATARARELLAKVGLAGKETSY-----PRRL 145 (250)
T ss_pred ccchhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhCC-----hhhC
Confidence 235679999999999988999999988643111 123344556788999999998766543 4689
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEE
Q 004537 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (746)
Q Consensus 297 SGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~ 376 (746)
||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. ++.+.||++++|++|++++
T Consensus 146 S~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~l~~G~i~~ 224 (250)
T PRK11264 146 SGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMS-FARDVADRAIFMDQGRIVE 224 (250)
T ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999999999877999999999975 5778899999999999999
Q ss_pred ecCHHHHH
Q 004537 377 FGKASEAM 384 (746)
Q Consensus 377 ~G~~~~~~ 384 (746)
.|+++++.
T Consensus 225 ~~~~~~~~ 232 (250)
T PRK11264 225 QGPAKALF 232 (250)
T ss_pred eCCHHHHh
Confidence 99988764
|
|
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-43 Score=376.33 Aligned_cols=232 Identities=27% Similarity=0.453 Sum_probs=191.2
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (746)
.++++||+++|... ....+++|+|||++|++||+++|+||||||||||+++|+|.. ++.+|+|.++|+++..
T Consensus 2 ~l~~~~l~~~y~~~---~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~--~p~~G~i~~~g~~i~~~~~ 76 (290)
T PRK13634 2 DITFQKVEHRYQYK---TPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLL--QPTSGTVTIGERVITAGKK 76 (290)
T ss_pred EEEEEEEEEEECCC---CcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC--CCCCcEEEECCEECccccc
Confidence 37899999999311 011256999999999999999999999999999999999964 3468999999998731
Q ss_pred -----hccCcEEEEecCC--cCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCC-ccccccccCccccCCC
Q 004537 226 -----SLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVS 297 (746)
Q Consensus 226 -----~~~~~i~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LS 297 (746)
..++.|+||+|++ .+++ .||+||+.|+.... ..+.++..++++++++.+||. +..++ .++.||
T Consensus 77 ~~~~~~~~~~ig~v~q~~~~~l~~-~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~~LS 147 (290)
T PRK13634 77 NKKLKPLRKKVGIVFQFPEHQLFE-ETVEKDICFGPMNF---GVSEEDAKQKAREMIELVGLPEELLAR-----SPFELS 147 (290)
T ss_pred cchHHHHHhhEEEEeeCchhhhhh-hhHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCChhhhhC-----CcccCC
Confidence 3456799999986 4664 69999999875432 234555566789999999996 44554 356899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEE
Q 004537 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (746)
Q Consensus 298 GGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~ 376 (746)
|||||||+|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||++. ++.+.||+|++|++|++++
T Consensus 148 gGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~-~~~~~~drv~~l~~G~i~~ 226 (290)
T PRK13634 148 GGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSME-DAARYADQIVVMHKGTVFL 226 (290)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999765 899999999975 5778899999999999999
Q ss_pred ecCHHHHHH---HHHhcCCCCC
Q 004537 377 FGKASEAMA---YFSSIGCSPQ 395 (746)
Q Consensus 377 ~G~~~~~~~---~f~~~G~~~~ 395 (746)
.|+++++.+ .+...+..+|
T Consensus 227 ~g~~~~~~~~~~~~~~~~~~~~ 248 (290)
T PRK13634 227 QGTPREIFADPDELEAIGLDLP 248 (290)
T ss_pred ECCHHHHhcCHHHHHHCCCCCC
Confidence 999988642 2334455444
|
|
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-43 Score=361.91 Aligned_cols=214 Identities=30% Similarity=0.520 Sum_probs=183.4
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---h
Q 004537 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---S 226 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---~ 226 (746)
++++||+++|..+ ....++|+|+|+++++||+++|+||||||||||+++|+|.. ++.+|+|.++|+++.. .
T Consensus 2 l~~~~v~~~~~~~----~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~--~~~~G~i~~~g~~~~~~~~~ 75 (218)
T cd03266 2 ITADALTKRFRDV----KKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLL--EPDAGFATVDGFDVVKEPAE 75 (218)
T ss_pred eEEEEEEEecCCC----CccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCc--CCCCceEEECCEEcccCHHH
Confidence 7899999998311 01126999999999999999999999999999999999954 3568999999998753 3
Q ss_pred ccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHH
Q 004537 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (746)
Q Consensus 227 ~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~I 306 (746)
+++.++|++|++.+++.+||+||+.+....+ .....+..+++.++++.+||.+..+.. ++.||||||||++|
T Consensus 76 ~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~l 147 (218)
T cd03266 76 ARRRLGFVSDSTGLYDRLTARENLEYFAGLY---GLKGDELTARLEELADRLGMEELLDRR-----VGGFSTGMRQKVAI 147 (218)
T ss_pred HHhhEEEecCCcccCcCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHHhhh-----hhhcCHHHHHHHHH
Confidence 4678999999999999899999998865432 133445567788999999998766654 46899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEec
Q 004537 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (746)
Q Consensus 307 A~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G 378 (746)
||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. ++.+.+|++++|++|++++.|
T Consensus 148 aral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 148 ARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQ-EVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhcCEEEEEECCEEeecC
Confidence 99999999999999999999999999999999999877999999999975 577889999999999998765
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-43 Score=366.30 Aligned_cols=217 Identities=29% Similarity=0.507 Sum_probs=187.5
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh----
Q 004537 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (746)
++++|++++| +++.+|+|+|+++++||+++|+||||||||||+++|+|.. ++.+|+|.++|.++..
T Consensus 2 l~~~~l~~~~--------~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~--~~~~G~i~~~g~~~~~~~~~ 71 (240)
T PRK09493 2 IEFKNVSKHF--------GPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLE--EITSGDLIVDGLKVNDPKVD 71 (240)
T ss_pred EEEEeEEEEE--------CCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC--CCCceEEEECCEECCcCChh
Confidence 7899999998 2457999999999999999999999999999999999954 3568999999998752
Q ss_pred --hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHH
Q 004537 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (746)
Q Consensus 226 --~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqR 303 (746)
..++.++|++|++.+++.+||+||+.++.... ......+..+++.++++.+||++..+.. ++.||||||||
T Consensus 72 ~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~G~~qr 144 (240)
T PRK09493 72 ERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRV--RGASKEEAEKQARELLAKVGLAERAHHY-----PSELSGGQQQR 144 (240)
T ss_pred HHHHhhceEEEecccccCCCCcHHHHHHhHHHHh--cCCCHHHHHHHHHHHHHHcCChHHHhcC-----hhhcCHHHHHH
Confidence 34567999999999998899999998864211 1123444556788999999998766654 46899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHH
Q 004537 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (746)
Q Consensus 304 v~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 383 (746)
++|||+|+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||++. ++.+.||++++|++|++++.|+++++
T Consensus 145 v~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 223 (240)
T PRK09493 145 VAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIG-FAEKVASRLIFIDKGRIAEDGDPQVL 223 (240)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEeeCCHHHH
Confidence 99999999999999999999999999999999999999877999999999975 46778999999999999999998876
Q ss_pred H
Q 004537 384 M 384 (746)
Q Consensus 384 ~ 384 (746)
.
T Consensus 224 ~ 224 (240)
T PRK09493 224 I 224 (240)
T ss_pred h
Confidence 4
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-43 Score=381.23 Aligned_cols=207 Identities=29% Similarity=0.455 Sum_probs=183.0
Q ss_pred cccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---hccCcEEEEecCCcCCCCCC
Q 004537 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---SLKSKIGFVTQDDVLFPHLT 245 (746)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---~~~~~i~yv~Q~~~l~~~lT 245 (746)
++.+|+|+||+|++||+++|+||||||||||+|+|+|.+. +.+|+|.++|+++.. ..++++||++|++.+++.+|
T Consensus 5 ~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 82 (302)
T TIGR01188 5 DFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLR--PTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLT 82 (302)
T ss_pred CeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCc
Confidence 4579999999999999999999999999999999999653 468999999998743 34678999999999999999
Q ss_pred HHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 004537 246 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSG 325 (746)
Q Consensus 246 V~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~illLDEPTsg 325 (746)
|+||+.+.+..+ ..+..+..++++++++.+||.+..++.+ +.|||||||||+||+||+.+|++|||||||+|
T Consensus 83 v~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~lllLDEPt~g 154 (302)
T TIGR01188 83 GRENLEMMGRLY---GLPKDEAEERAEELLELFELGEAADRPV-----GTYSGGMRRRLDIAASLIHQPDVLFLDEPTTG 154 (302)
T ss_pred HHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhCCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcC
Confidence 999999876543 2334455667899999999988777654 68999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHHHH
Q 004537 326 LDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAY 386 (746)
Q Consensus 326 LD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~~ 386 (746)
||+.++..+.+.|++++++|+|||++||++. ++.+.||+|++|++|++++.|+++++.+-
T Consensus 155 LD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 214 (302)
T TIGR01188 155 LDPRTRRAIWDYIRALKEEGVTILLTTHYME-EADKLCDRIAIIDHGRIIAEGTPEELKRR 214 (302)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEECCHHHHHHh
Confidence 9999999999999999877999999999975 57789999999999999999999987654
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-43 Score=367.38 Aligned_cols=216 Identities=30% Similarity=0.549 Sum_probs=186.3
Q ss_pred EEEEeEEEEEeecccccccc-ccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 004537 150 LKFTDVTYKVILKGMTSSEE-KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~-~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (746)
++++||+++| ++ +.+|+|+|++|++||+++|+||||||||||+++|+|.. ++.+|+|.++|+++..
T Consensus 1 l~~~~l~~~~--------~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~--~~~~G~i~~~g~~~~~~~~ 70 (242)
T cd03295 1 IEFENVTKRY--------GGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLI--EPTSGEIFIDGEDIREQDP 70 (242)
T ss_pred CEEEEEEEEe--------CCcceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCC--CCCCceEEECCeEcCcCCh
Confidence 4689999998 22 56999999999999999999999999999999999964 3568999999998742
Q ss_pred -hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCc--cccccccCccccCCCHHHHH
Q 004537 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER--CQDTMIGGSFVRGVSGGERK 302 (746)
Q Consensus 226 -~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~--~~~~~vg~~~~~~LSGGerq 302 (746)
..++.++|++|++.+++.+||+||+.+..... ....+...+++.++++.+||.+ ..++ .++.|||||||
T Consensus 71 ~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~l~l~~~~~~~~-----~~~~LS~G~~q 142 (242)
T cd03295 71 VELRRKIGYVIQQIGLFPHMTVEENIALVPKLL---KWPKEKIRERADELLALVGLDPAEFADR-----YPHELSGGQQQ 142 (242)
T ss_pred HHhhcceEEEccCccccCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcHHHHhc-----ChhhCCHHHHH
Confidence 34568999999999999899999999875432 1234445567889999999985 4443 35689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHH
Q 004537 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 381 (746)
Q Consensus 303 Rv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 381 (746)
||+|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+.||++++|++|++++.|+++
T Consensus 143 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~ 221 (242)
T cd03295 143 RVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDID-EAFRLADRIAIMKNGEIVQVGTPD 221 (242)
T ss_pred HHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEecCHH
Confidence 999999999999999999999999999999999999999765 899999999975 467889999999999999999988
Q ss_pred HHH
Q 004537 382 EAM 384 (746)
Q Consensus 382 ~~~ 384 (746)
++.
T Consensus 222 ~~~ 224 (242)
T cd03295 222 EIL 224 (242)
T ss_pred HHH
Confidence 764
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-43 Score=363.46 Aligned_cols=214 Identities=29% Similarity=0.515 Sum_probs=182.3
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh----
Q 004537 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (746)
|+++||+++| +++++|+|+||++++||+++|+||||||||||+++|+|.. ++.+|+|.++|.++..
T Consensus 1 l~~~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~--~~~~G~i~~~g~~~~~~~~~ 70 (222)
T cd03224 1 LEVENLNAGY--------GKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLL--PPRSGSIRFDGRDITGLPPH 70 (222)
T ss_pred CEEeeEEeec--------CCeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCC--CCCCceEEECCEEcCCCCHH
Confidence 4789999988 2357999999999999999999999999999999999964 3468999999988742
Q ss_pred h-ccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHc-CCCccccccccCccccCCCHHHHHH
Q 004537 226 S-LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL-GLERCQDTMIGGSFVRGVSGGERKR 303 (746)
Q Consensus 226 ~-~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l-gL~~~~~~~vg~~~~~~LSGGerqR 303 (746)
. .++.++|++|++.+++.+|++||+.+...... ..+..+++.++++.+ ++++..++. ++.||||||||
T Consensus 71 ~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~-----~~~~~~~~~~~l~~~~~l~~~~~~~-----~~~LS~G~~qr 140 (222)
T cd03224 71 ERARAGIGYVPEGRRIFPELTVEENLLLGAYARR-----RAKRKARLERVYELFPRLKERRKQL-----AGTLSGGEQQM 140 (222)
T ss_pred HHHhcCeEEeccccccCCCCcHHHHHHHHhhhcC-----chhHHHHHHHHHHHHHhhhhhhhCc-----hhhCCHHHHHH
Confidence 1 25679999999999999999999998754321 122344567778877 466655543 46899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHH
Q 004537 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (746)
Q Consensus 304 v~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 383 (746)
++|||+|+.+|++|+|||||+|||+.++..+++.|++++++|+|||++||++. ++.+.||++++|++|++++.|+++++
T Consensus 141 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (222)
T cd03224 141 LAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNAR-FALEIADRAYVLERGRVVLEGTAAEL 219 (222)
T ss_pred HHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhccEEEEeeCCeEEEeCCHHHH
Confidence 99999999999999999999999999999999999999877899999999975 57788999999999999999998775
Q ss_pred H
Q 004537 384 M 384 (746)
Q Consensus 384 ~ 384 (746)
.
T Consensus 220 ~ 220 (222)
T cd03224 220 L 220 (222)
T ss_pred h
Confidence 4
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-43 Score=390.85 Aligned_cols=220 Identities=25% Similarity=0.451 Sum_probs=190.4
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (746)
.|+++||+++| +++.+|+|+||+|++||+++|+||||||||||||+|+|.+. +.+|+|.++|+++.+
T Consensus 3 ~L~~~nls~~y--------~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~--p~sG~I~l~G~~i~~~~~ 72 (402)
T PRK09536 3 MIDVSDLSVEF--------GDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLT--PTAGTVLVAGDDVEALSA 72 (402)
T ss_pred eEEEeeEEEEE--------CCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC--CCCcEEEECCEEcCcCCH
Confidence 58999999998 34679999999999999999999999999999999999653 568999999998753
Q ss_pred -hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCC-CCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHH
Q 004537 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPN-TLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (746)
Q Consensus 226 -~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqR 303 (746)
.+++++|||+|++.+++.+||+||+.++....... ........++++++++.+|+.+..++. +++||||||||
T Consensus 73 ~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~-----~~~LSgGerQR 147 (402)
T PRK09536 73 RAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRP-----VTSLSGGERQR 147 (402)
T ss_pred HHHhcceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCC-----hhhCCHHHHHH
Confidence 45678999999999988899999999864211000 001234556789999999998877754 46899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHH
Q 004537 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (746)
Q Consensus 304 v~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 383 (746)
|+|||||+.+|++|||||||+|||+.++.++++.|++++++|+|||+++|++. ++.+.||++++|++|++++.|+++++
T Consensus 148 v~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~-~~~~~adrii~l~~G~iv~~G~~~ev 226 (402)
T PRK09536 148 VLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLD-LAARYCDELVLLADGRVRAAGPPADV 226 (402)
T ss_pred HHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEecCHHHH
Confidence 99999999999999999999999999999999999999877999999999975 57789999999999999999999885
Q ss_pred H
Q 004537 384 M 384 (746)
Q Consensus 384 ~ 384 (746)
+
T Consensus 227 ~ 227 (402)
T PRK09536 227 L 227 (402)
T ss_pred h
Confidence 3
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-43 Score=368.48 Aligned_cols=219 Identities=29% Similarity=0.450 Sum_probs=184.2
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh----
Q 004537 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (746)
++++||+++|. .++++|+|+|+++++||+++|+||||||||||+++|+|.. ++.+|+|.++|.++..
T Consensus 2 l~~~~l~~~~~-------~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~--~~~~G~i~~~g~~~~~~~~~ 72 (243)
T TIGR02315 2 LEVENLSKVYP-------NGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLV--EPSSGSILLEGTDITKLRGK 72 (243)
T ss_pred eEEEeeeeecC-------CCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCc--CCCccEEEECCEEhhhCCHH
Confidence 78999999882 1457999999999999999999999999999999999954 3568999999998742
Q ss_pred ---hccCcEEEEecCCcCCCCCCHHHHHHHHHhccC--C---CCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCC
Q 004537 226 ---SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRL--P---NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVS 297 (746)
Q Consensus 226 ---~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~--~---~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS 297 (746)
.+++.++|++|++.+++.+||+||+.++..... . ......+..+++.++++.+||.+..+.. +..||
T Consensus 73 ~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS 147 (243)
T TIGR02315 73 KLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQR-----ADQLS 147 (243)
T ss_pred HHHHHHhheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCC-----cccCC
Confidence 246779999999999998999999987532100 0 0011233456788999999998766643 46899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEE
Q 004537 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (746)
Q Consensus 298 GGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~ 376 (746)
|||||||+|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++. .+.+.||++++|++|++++
T Consensus 148 gG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~-~~~~~~d~v~~l~~G~i~~ 226 (243)
T TIGR02315 148 GGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVD-LAKKYADRIVGLKAGEIVF 226 (243)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEECCEEEe
Confidence 99999999999999999999999999999999999999999999764 899999999976 4678899999999999999
Q ss_pred ecCHHHH
Q 004537 377 FGKASEA 383 (746)
Q Consensus 377 ~G~~~~~ 383 (746)
.|+++++
T Consensus 227 ~~~~~~~ 233 (243)
T TIGR02315 227 DGAPSEL 233 (243)
T ss_pred cCCHHHh
Confidence 9998774
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-43 Score=371.63 Aligned_cols=218 Identities=24% Similarity=0.448 Sum_probs=188.0
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (746)
.|+++||+++| +++.+|+|+||+|++||+++|+||||||||||+++|+|.. ++.+|+|.++|+++..
T Consensus 7 ~l~~~~l~~~~--------~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~--~p~~G~i~~~g~~i~~~~~ 76 (269)
T PRK11831 7 LVDMRGVSFTR--------GNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQI--APDHGEILFDGENIPAMSR 76 (269)
T ss_pred eEEEeCeEEEE--------CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC--CCCCceEEECCEEccccCh
Confidence 59999999998 3457999999999999999999999999999999999964 3468999999998742
Q ss_pred ----hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHH
Q 004537 226 ----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301 (746)
Q Consensus 226 ----~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGer 301 (746)
..++.++|++|++.+++.+||.||+.+...... ........+++.+.++.+||.+..+.. +..||||||
T Consensus 77 ~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgGq~ 149 (269)
T PRK11831 77 SRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHT--QLPAPLLHSTVMMKLEAVGLRGAAKLM-----PSELSGGMA 149 (269)
T ss_pred hhHHHHhhcEEEEecccccCCCCCHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHcCChhhhhCC-----hhhCCHHHH
Confidence 135679999999999998999999998643211 123444456788899999998776654 468999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCH
Q 004537 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380 (746)
Q Consensus 302 qRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~ 380 (746)
|||+|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+.||++++|++|++++.|++
T Consensus 150 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~v~~l~~G~i~~~g~~ 228 (269)
T PRK11831 150 RRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVP-EVLSIADHAYIVADKKIVAHGSA 228 (269)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhhCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999999765 899999999975 57788999999999999999998
Q ss_pred HHHH
Q 004537 381 SEAM 384 (746)
Q Consensus 381 ~~~~ 384 (746)
+++.
T Consensus 229 ~~~~ 232 (269)
T PRK11831 229 QALQ 232 (269)
T ss_pred HHHh
Confidence 8764
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-43 Score=377.57 Aligned_cols=233 Identities=27% Similarity=0.420 Sum_probs=191.7
Q ss_pred ceEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh--
Q 004537 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (746)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (746)
..|+++||++.|..+ ...++++|+|||++|++||+++|+||||||||||+++|+|.. ++.+|+|.++|+++.+
T Consensus 20 ~~l~~~nl~~~y~~~---~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~--~p~~G~I~i~g~~~~~~~ 94 (320)
T PRK13631 20 IILRVKNLYCVFDEK---QENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLI--KSKYGTIQVGDIYIGDKK 94 (320)
T ss_pred ceEEEEeEEEEeCCC---CcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC--CCCCCeEEECCEEccccc
Confidence 369999999999311 011346999999999999999999999999999999999954 3468999999987632
Q ss_pred ------------------hccCcEEEEecCC--cCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCC-ccc
Q 004537 226 ------------------SLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQ 284 (746)
Q Consensus 226 ------------------~~~~~i~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~ 284 (746)
.++++++||+|++ .+|+ .||+||+.|+.... ..+.++..+++.++++.+||+ +..
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~-~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~ 170 (320)
T PRK13631 95 NNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFK-DTIEKDIMFGPVAL---GVKKSEAKKLAKFYLNKMGLDDSYL 170 (320)
T ss_pred ccccccccccccccchHHHHHhcEEEEEECchhcccc-chHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCChhHh
Confidence 3467899999987 5776 59999999875321 234555566788999999996 344
Q ss_pred cccccCccccCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccC
Q 004537 285 DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFD 364 (746)
Q Consensus 285 ~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D 364 (746)
++ .+..|||||||||+|||+|+.+|++|||||||+|||+.++..+++.|+++.++|+|||++||++. .+.+.||
T Consensus 171 ~~-----~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~-~~~~~ad 244 (320)
T PRK13631 171 ER-----SPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTME-HVLEVAD 244 (320)
T ss_pred cC-----CcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCC
Confidence 43 45689999999999999999999999999999999999999999999999877999999999975 4668899
Q ss_pred EEEEEeCCeEEEecCHHHHHH---HHHhcCCCCC
Q 004537 365 KLILLGKGSLLYFGKASEAMA---YFSSIGCSPQ 395 (746)
Q Consensus 365 ~i~vL~~G~iv~~G~~~~~~~---~f~~~G~~~~ 395 (746)
+|++|++|++++.|+++++.. .++..|..+|
T Consensus 245 ri~vl~~G~i~~~g~~~~~~~~~~~~~~~~~~~p 278 (320)
T PRK13631 245 EVIVMDKGKILKTGTPYEIFTDQHIINSTSIQVP 278 (320)
T ss_pred EEEEEECCEEEEeCCHHHHhcCHHHHHHcCCCCC
Confidence 999999999999999988643 2334455444
|
|
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-43 Score=370.57 Aligned_cols=217 Identities=26% Similarity=0.406 Sum_probs=185.6
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (746)
.|+++||+++|. .++.+|+|+|++|++||+++|+||||||||||+++|+|.. ++.+|+|.++|+++..
T Consensus 4 ~l~~~~l~~~~~-------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~--~p~~G~i~~~g~~~~~~~~ 74 (274)
T PRK13647 4 IIEVEDLHFRYK-------DGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIY--LPQRGRVKVMGREVNAENE 74 (274)
T ss_pred eEEEEEEEEEeC-------CCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC--CCCceEEEECCEECCCCCH
Confidence 589999999982 1346999999999999999999999999999999999954 3468999999998752
Q ss_pred -hccCcEEEEecCCc-CCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHH
Q 004537 226 -SLKSKIGFVTQDDV-LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (746)
Q Consensus 226 -~~~~~i~yv~Q~~~-l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqR 303 (746)
..++.++||+|++. .++..||.||+.|+.... ..++.+.++++.++++.+||.+..++. +..||||||||
T Consensus 75 ~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~-----~~~LSgG~~qr 146 (274)
T PRK13647 75 KWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNM---GLDKDEVERRVEEALKAVRMWDFRDKP-----PYHLSYGQKKR 146 (274)
T ss_pred HHHHhhEEEEecChhhhhccCcHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCC-----hhhCCHHHHHH
Confidence 34577999999973 334579999999875421 234445556788999999998766654 46899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHH
Q 004537 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (746)
Q Consensus 304 v~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 383 (746)
|+|||||+.+|++|||||||+|||+.++.++.+.|++++++|+|||++||++. .+.+.||++++|++|++++.|+++++
T Consensus 147 v~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 147 VAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVD-LAAEWADQVIVLKEGRVLAEGDKSLL 225 (274)
T ss_pred HHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHh
Confidence 99999999999999999999999999999999999999877999999999975 46688999999999999999998654
|
|
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-45 Score=394.48 Aligned_cols=348 Identities=24% Similarity=0.317 Sum_probs=243.6
Q ss_pred HHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeeccccccceecchhc----hhhhhh
Q 004537 17 QLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVS----SGAALS 92 (746)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~~ 92 (746)
+--|+-+.+-.|.-+-|||+-|+++.-|...|...+.+-...+.|....-+ --+-.|..+-..++. .++..+
T Consensus 393 ~~nesrAr~vDsllNFETVKyy~Ae~yEverYreAil~Yqk~E~ks~~sLn----fLN~~Qn~Ii~lgll~gsll~aY~V 468 (790)
T KOG0056|consen 393 SWNESRARQVDSLLNFETVKYYNAEDYEVERYREAILKYQKQEWKSLASLN----FLNIVQNGIIGLGLLAGSLLCAYRV 468 (790)
T ss_pred hhhhhhhhhhhhhhcchhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhhhhhhhHHhhhhheeeeee
Confidence 334555566677778899999999998888887665433222221000000 012223322222222 344455
Q ss_pred hhcccccchhhhhccccc----Chhhh----ccCCCCCCCCCccc---ccccCCC--CCCCCCCCCCCceEEEEeEEEEE
Q 004537 93 RASSASLGLSFSFTGFTM----PPDEI----ADSKPFSDDDIPED---IEAGTRE--RPKFQTEPTLPIYLKFTDVTYKV 159 (746)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~----~~~~~----~~~~~~~~~~~~~~---~~~~~~~--~~~~~~~~~~~~~l~~~nvs~~~ 159 (746)
..+....|....|..|.+ |..-. +.... ..-|.++- ++..+.. .|.-.+.......++|+||+|.|
T Consensus 469 t~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~-nfiDmEnmfdllkee~eVvd~P~a~pl~~~~G~i~fsnvtF~Y 547 (790)
T KOG0056|consen 469 TEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQK-NFIDMENMFDLLKEEPEVVDLPGAPPLKVTQGKIEFSNVTFAY 547 (790)
T ss_pred eeccccccceehHHHHHHHHhCchHHHHHHHHHHHH-hhhhHHHHHHHhhcCchhhcCCCCCCccccCCeEEEEEeEEec
Confidence 566777887777765443 32100 00000 00111110 1111000 01111111223469999999999
Q ss_pred eeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh----hccCcEEEEe
Q 004537 160 ILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVT 235 (746)
Q Consensus 160 ~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~----~~~~~i~yv~ 235 (746)
. .++++|+||||++.||+.+||+||||+||||++++|- |+.+. .+|.|.+||+|++. .+|+.||.||
T Consensus 548 ~-------p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLf-Rffdv-~sGsI~iDgqdIrnvt~~SLRs~IGVVP 618 (790)
T KOG0056|consen 548 D-------PGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLF-RFFDV-NSGSITIDGQDIRNVTQSSLRSSIGVVP 618 (790)
T ss_pred C-------CCCceeecceEEecCCcEEEEECCCCCchhHHHHHHH-HHhhc-cCceEEEcCchHHHHHHHHHHHhcCccc
Confidence 3 5689999999999999999999999999999999999 66654 48999999999863 6899999999
Q ss_pred cCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHHHHHhhCCC
Q 004537 236 QDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPS 315 (746)
Q Consensus 236 Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~ 315 (746)
||..||.+ |+..||+|+......+++..+.+.+.+++ +.++.++.++|+||++..+ |||||||||+|||+++++|.
T Consensus 619 QDtvLFNd-TI~yNIryak~~AsneevyaAAkAA~IHd--rIl~fPegY~t~VGERGLk-LSGGEKQRVAiARtiLK~P~ 694 (790)
T KOG0056|consen 619 QDTVLFND-TILYNIRYAKPSASNEEVYAAAKAAQIHD--RILQFPEGYNTRVGERGLK-LSGGEKQRVAIARTILKAPS 694 (790)
T ss_pred Ccceeecc-eeeeheeecCCCCChHHHHHHHHHhhHHH--HHhcCchhhhhhhhhcccc-cCCcchhhHHHHHHHhcCCc
Confidence 99999975 99999999732211111111222222333 2357799999999987765 99999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHHH
Q 004537 316 LLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (746)
Q Consensus 316 illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 385 (746)
|++|||.||+||..+++.|...|.++++ ++|.|++.|++++ .-.+|.|+++++|+|++.|.|+|++.
T Consensus 695 iIlLDEATSALDT~tER~IQaaL~rlca-~RTtIVvAHRLST--ivnAD~ILvi~~G~IvErG~HeeLl~ 761 (790)
T KOG0056|consen 695 IILLDEATSALDTNTERAIQAALARLCA-NRTTIVVAHRLST--IVNADLILVISNGRIVERGRHEELLK 761 (790)
T ss_pred EEEEcchhhhcCCccHHHHHHHHHHHhc-CCceEEEeeeehh--eecccEEEEEeCCeEeecCcHHHHHh
Confidence 9999999999999999999999999986 8999999999986 35699999999999999999999985
|
|
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-43 Score=358.63 Aligned_cols=206 Identities=32% Similarity=0.536 Sum_probs=179.1
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh--hc
Q 004537 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SL 227 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--~~ 227 (746)
|+++|++++| +++++|+|+||++++||+++|+||||||||||+++|+|.. ++.+|+|.++|+++.. ..
T Consensus 1 l~~~~l~~~~--------~~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~--~~~~G~i~~~g~~~~~~~~~ 70 (208)
T cd03268 1 LKTNDLTKTY--------GKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLI--KPDSGEITFDGKSYQKNIEA 70 (208)
T ss_pred CEEEEEEEEE--------CCeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCc--CCCceEEEECCCcccchHHH
Confidence 4789999998 2457999999999999999999999999999999999964 3568999999988742 34
Q ss_pred cCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHH
Q 004537 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (746)
Q Consensus 228 ~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA 307 (746)
++.++||+|++.+++.+||+||+.+...... . .+++++++++.++|.+..++. ++.|||||||||+||
T Consensus 71 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~----~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~la 138 (208)
T cd03268 71 LRRIGALIEAPGFYPNLTARENLRLLARLLG---I----RKKRIDEVLDVVGLKDSAKKK-----VKGFSLGMKQRLGIA 138 (208)
T ss_pred HhhEEEecCCCccCccCcHHHHHHHHHHhcC---C----cHHHHHHHHHHcCCHHHHhhh-----HhhCCHHHHHHHHHH
Confidence 5679999999999989999999988754221 1 234678889999998766654 468999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEec
Q 004537 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (746)
Q Consensus 308 ~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G 378 (746)
|+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|+|++||++. .+.+.||++++|++|++++.|
T Consensus 139 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 139 LALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLS-EIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred HHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999999999999999877899999999975 466789999999999998765
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-43 Score=371.50 Aligned_cols=229 Identities=24% Similarity=0.435 Sum_probs=192.2
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (746)
.++++||+++|.. ...+.+|+|+|++|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 4 ~l~~~~l~~~~~~-----~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~ 76 (279)
T PRK13650 4 IIEVKNLTFKYKE-----DQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLE--AESGQIIIDGDLLTEENV 76 (279)
T ss_pred eEEEEeEEEEcCC-----CCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEECCcCcH
Confidence 5899999999831 122469999999999999999999999999999999999643 468999999998752
Q ss_pred -hccCcEEEEecCCc-CCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHH
Q 004537 226 -SLKSKIGFVTQDDV-LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (746)
Q Consensus 226 -~~~~~i~yv~Q~~~-l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqR 303 (746)
..+++++||+|++. +++..||+||+.|+.... ..++++..++++++++.+||++..+.. +..||||||||
T Consensus 77 ~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~LSgGq~qr 148 (279)
T PRK13650 77 WDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENK---GIPHEEMKERVNEALELVGMQDFKERE-----PARLSGGQKQR 148 (279)
T ss_pred HHHHhhceEEEcChHHhcccccHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCCHhHhhCC-----cccCCHHHHHH
Confidence 35678999999973 566789999999875432 244556667789999999998766654 46899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHH
Q 004537 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (746)
Q Consensus 304 v~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~ 382 (746)
++|||+|+.+|++|||||||+|||+.++..+++.|++++++ |+|||++||++.. + ..||++++|++|+++..|++++
T Consensus 149 v~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~-~-~~~dri~~l~~G~i~~~g~~~~ 226 (279)
T PRK13650 149 VAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDE-V-ALSDRVLVMKNGQVESTSTPRE 226 (279)
T ss_pred HHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-H-HhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999999875 9999999999753 5 5799999999999999999988
Q ss_pred HHHH---HHhcCCCC
Q 004537 383 AMAY---FSSIGCSP 394 (746)
Q Consensus 383 ~~~~---f~~~G~~~ 394 (746)
+.+. ++..|+++
T Consensus 227 ~~~~~~~~~~~~~~~ 241 (279)
T PRK13650 227 LFSRGNDLLQLGLDI 241 (279)
T ss_pred HHcChHHHHHcCCCC
Confidence 6532 33445443
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-43 Score=360.58 Aligned_cols=209 Identities=32% Similarity=0.541 Sum_probs=176.4
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh----
Q 004537 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (746)
|+++||+++|... ...+.+|+|+||++++||+++|+||||||||||+++|+|.. ++.+|+|.++|+++..
T Consensus 1 l~~~~l~~~~~~~----~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~--~~~~G~i~~~g~~~~~~~~~ 74 (218)
T cd03255 1 IELKNLSKTYGGG----GEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLD--RPTSGEVRVDGTDISKLSEK 74 (218)
T ss_pred CeEeeeEEEecCC----CcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCc--CCCceeEEECCEehhhcchh
Confidence 4789999998210 01157999999999999999999999999999999999954 3468999999998742
Q ss_pred ---h-ccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHH
Q 004537 226 ---S-LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301 (746)
Q Consensus 226 ---~-~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGer 301 (746)
. .++.++|++|++.+++.+||+||+.++...+. ......+++++++++.+||++..++. ++.||||||
T Consensus 75 ~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~ 146 (218)
T cd03255 75 ELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAG---VPKKERRERAEELLERVGLGDRLNHY-----PSELSGGQQ 146 (218)
T ss_pred HHHHHHhhcEEEEeeccccCCCCcHHHHHHHHHhhcC---CCHHHHHHHHHHHHHHcCCchhhhcC-----hhhcCHHHH
Confidence 1 24679999999999998999999998764331 22334456788999999998766654 468999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCChHHHhccCEEEEEeCCeE
Q 004537 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (746)
Q Consensus 302 qRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~-~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~i 374 (746)
|||+|||+|+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++||++.. + ..||++++|++|++
T Consensus 147 qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~-~-~~~d~v~~l~~G~i 218 (218)
T cd03255 147 QRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPEL-A-EYADRIIELRDGKI 218 (218)
T ss_pred HHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHH-H-hhhcEEEEeeCCcC
Confidence 999999999999999999999999999999999999999987 58999999999764 5 48999999999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-44 Score=351.68 Aligned_cols=220 Identities=26% Similarity=0.492 Sum_probs=196.5
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (746)
.|..+|+.++| ++++++++||+++++||+++++|||||||||.+.++.|... +++|+|.+||.+++.
T Consensus 4 ~L~a~~l~K~y--------~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~--~d~G~i~ld~~diT~lPm 73 (243)
T COG1137 4 TLVAENLAKSY--------KKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVR--PDSGKILLDDEDITKLPM 73 (243)
T ss_pred EEEehhhhHhh--------CCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEe--cCCceEEECCcccccCCh
Confidence 58889999988 56789999999999999999999999999999999999653 568999999999874
Q ss_pred --hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHH
Q 004537 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (746)
Q Consensus 226 --~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqR 303 (746)
..|..|||+||++..|..|||+|||......+.. +..+++.+.+++++|++++|.|.++..- ..||||||+|
T Consensus 74 ~~RArlGigYLpQE~SIFr~LtV~dNi~~vlE~~~~-d~~~~~~~~~l~~LL~ef~i~hlr~~~a-----~sLSGGERRR 147 (243)
T COG1137 74 HKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREK-DLKKAERKEELDALLEEFHITHLRDSKA-----YSLSGGERRR 147 (243)
T ss_pred HHHhhcCcccccccchHhhcCcHHHHHHHHHhhhhc-chhHHHHHHHHHHHHHHhchHHHhcCcc-----cccccchHHH
Confidence 2345699999999999999999999988766532 2334566677899999999999998653 5799999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHH
Q 004537 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (746)
Q Consensus 304 v~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 383 (746)
+.|||||+.+|+.++||||++|.||.+..+|.++++.|+++|..|+++-|+.. +....|||.+++.+|++..+|+++|+
T Consensus 148 ~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVR-EtL~i~dRaYIi~~G~vla~G~p~ei 226 (243)
T COG1137 148 VEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVR-ETLDICDRAYIISDGKVLAEGSPEEI 226 (243)
T ss_pred HHHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHH-HHHhhhheEEEEecCeEEecCCHHHH
Confidence 99999999999999999999999999999999999999999999999999976 57799999999999999999999998
Q ss_pred HH
Q 004537 384 MA 385 (746)
Q Consensus 384 ~~ 385 (746)
.+
T Consensus 227 ~~ 228 (243)
T COG1137 227 VN 228 (243)
T ss_pred hc
Confidence 63
|
|
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-44 Score=421.90 Aligned_cols=354 Identities=21% Similarity=0.266 Sum_probs=244.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeeccccccceecchhchhhh
Q 004537 11 ARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSGAA 90 (746)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 90 (746)
.+..++..++..+...|..++.+|+|+++.+..+.+++.+......+...+.....+...........-..+.-+..|+.
T Consensus 184 ~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~ 263 (585)
T TIGR01192 184 QAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDWWALASGLNRMASTISMMCILVIGTV 263 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34446667788889999999999999999988888777766554333221100000000000011111112333457888
Q ss_pred hhhhcccccchhhhhccccc----ChhhhccCCC------CCCCCCcccccccCCC-CC-CCCCCCCCCceEEEEeEEEE
Q 004537 91 LSRASSASLGLSFSFTGFTM----PPDEIADSKP------FSDDDIPEDIEAGTRE-RP-KFQTEPTLPIYLKFTDVTYK 158 (746)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~------~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~l~~~nvs~~ 158 (746)
++..+.++.|.+..+..+.. |...+..... ....++.+.++..+.. .+ .....+.....++++||+|+
T Consensus 264 ~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~ 343 (585)
T TIGR01192 264 LVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQREEPADAPELPNVKGAVEFRHITFE 343 (585)
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCccCCCCCCCCCeEEEEEEEEE
Confidence 88888888888777764332 2222211100 0000011101100000 00 00001111235999999999
Q ss_pred EeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh----hccCcEEEE
Q 004537 159 VILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFV 234 (746)
Q Consensus 159 ~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~----~~~~~i~yv 234 (746)
|+ +++++|+|+|+++++||.++|+||||||||||+++|+|.. + +.+|+|.+||.++.+ .+++.++||
T Consensus 344 y~-------~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~-~-~~~G~i~~~g~~~~~~~~~~~~~~i~~v 414 (585)
T TIGR01192 344 FA-------NSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVY-D-PTVGQILIDGIDINTVTRESLRKSIATV 414 (585)
T ss_pred CC-------CCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCC-C-CCCCEEEECCEEhhhCCHHHHHhheEEE
Confidence 82 2246899999999999999999999999999999999853 3 468999999998753 567889999
Q ss_pred ecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHH-----HHHHHHHcCCCccccccccCccccCCCHHHHHHHHHHHH
Q 004537 235 TQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKR-----AIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNE 309 (746)
Q Consensus 235 ~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~-----v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~a 309 (746)
+|++.+|+ .|++||+.++. + ..++++..+. .++.+. .+++..||.+|+. ...||||||||++|||+
T Consensus 415 ~q~~~lf~-~ti~~Ni~~~~----~-~~~~~~~~~a~~~~~~~~~i~--~l~~g~~t~~~~~-~~~LSgGq~qrl~lARa 485 (585)
T TIGR01192 415 FQDAGLFN-RSIRENIRLGR----E-GATDEEVYEAAKAAAAHDFIL--KRSNGYDTLVGER-GNRLSGGERQRLAIARA 485 (585)
T ss_pred ccCCccCc-ccHHHHHhcCC----C-CCCHHHHHHHHHHhCcHHHHH--hccccccchhcCC-CCCCCHHHHHHHHHHHH
Confidence 99999997 59999999863 1 1233322222 222232 2456677877754 56799999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHHH
Q 004537 310 IIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (746)
Q Consensus 310 L~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 385 (746)
|+++|++|+||||||+||+.++..+.+.|+++. +++|+|++||+++. .+.||+|++|++|++++.|+++++++
T Consensus 486 ll~~p~ililDEpts~LD~~~~~~i~~~l~~~~-~~~tvI~isH~~~~--~~~~d~i~~l~~G~i~~~g~~~~l~~ 558 (585)
T TIGR01192 486 ILKNAPILVLDEATSALDVETEARVKNAIDALR-KNRTTFIIAHRLST--VRNADLVLFLDQGRLIEKGSFQELIQ 558 (585)
T ss_pred HhcCCCEEEEECCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcChHH--HHcCCEEEEEECCEEEEECCHHHHHH
Confidence 999999999999999999999999999999885 48999999999853 46799999999999999999999864
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-43 Score=364.11 Aligned_cols=215 Identities=26% Similarity=0.460 Sum_probs=184.6
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCC-----ccEEEECCEeCC
Q 004537 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTV-----GGSITYNDHPYS 224 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~-----~G~I~~~G~~~~ 224 (746)
++++||+++| +++.+|+|+|++|++||+++|+||||||||||+++|+|... +. +|+|.++|+++.
T Consensus 2 l~~~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~~~~~~G~i~~~g~~~~ 71 (247)
T TIGR00972 2 IEIENLNLFY--------GEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMND--LVPGVRIEGKVLFDGQDIY 71 (247)
T ss_pred EEEEEEEEEE--------CCeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCC--CCcCCCCceEEEECCEEcc
Confidence 7899999998 23469999999999999999999999999999999999653 33 899999999874
Q ss_pred h------hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCC----ccccccccCcccc
Q 004537 225 K------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE----RCQDTMIGGSFVR 294 (746)
Q Consensus 225 ~------~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~vg~~~~~ 294 (746)
. ..++.++|++|++.+++ +||+||+.+....+. ..+..+..++++++++.+||. +..++ .++
T Consensus 72 ~~~~~~~~~~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~~~ 143 (247)
T TIGR00972 72 DKKIDVVELRRRVGMVFQKPNPFP-MSIYDNIAYGPRLHG--IKDKKELDEIVEESLKKAALWDEVKDRLHD-----SAL 143 (247)
T ss_pred ccccchHHHHhheEEEecCcccCC-CCHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCCcchhhHhhC-----Ccc
Confidence 2 24578999999999998 899999998754321 123344556788999999997 44443 456
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeE
Q 004537 295 GVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (746)
Q Consensus 295 ~LSGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~i 374 (746)
.||||||||++|||+|+.+|+++||||||+|||+.++..+.+.|+++++ ++|||+++|++. ++.+.||++++|++|++
T Consensus 144 ~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~~~~~~d~i~~l~~G~i 221 (247)
T TIGR00972 144 GLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK-KYTIVIVTHNMQ-QAARISDRTAFFYDGEL 221 (247)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCeEEEEecCHH-HHHHhCCEEEEEECCEE
Confidence 8999999999999999999999999999999999999999999999977 589999999975 47788999999999999
Q ss_pred EEecCHHHHH
Q 004537 375 LYFGKASEAM 384 (746)
Q Consensus 375 v~~G~~~~~~ 384 (746)
++.|+++++.
T Consensus 222 ~~~~~~~~~~ 231 (247)
T TIGR00972 222 VEYGPTEQIF 231 (247)
T ss_pred EEeCCHHHHH
Confidence 9999988764
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-43 Score=359.52 Aligned_cols=221 Identities=44% Similarity=0.742 Sum_probs=184.4
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCC-CCCccEEEECCEeCCh-h
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-PTVGGSITYNDHPYSK-S 226 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~-~~~~G~I~~~G~~~~~-~ 226 (746)
.++|+||+++|... +..+++|+|+|+++++||+++|+||||||||||+|+|+|.... .+.+|+|.++|+++.. .
T Consensus 3 ~~~~~~~~~~~~~~----~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~ 78 (226)
T cd03234 3 VLPWWDVGLKAKNW----NKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQ 78 (226)
T ss_pred cceeecceeeeecC----ccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHH
Confidence 47899999998321 1146899999999999999999999999999999999996531 1468999999998753 4
Q ss_pred ccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHH-HHHHcCCCccccccccCccccCCCHHHHHHHH
Q 004537 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAID-VINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (746)
Q Consensus 227 ~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~-~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~ 305 (746)
.++.++|++|++.+++.+||+||+.++.....+.....+...+++++ .++.+++.+..++. ++.||||||||++
T Consensus 79 ~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~ 153 (226)
T cd03234 79 FQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNL-----VKGISGGERRRVS 153 (226)
T ss_pred hcccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhccc-----ccCcCHHHHHHHH
Confidence 56789999999999999999999998765432222222333344555 88888887665543 4689999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEec
Q 004537 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (746)
Q Consensus 306 IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G 378 (746)
|||+|+.+|++|||||||+|||+.++..+.+.|+++.++|+|+|+++|++..++.+.||++++|++|++++.|
T Consensus 154 laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 154 IAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 9999999999999999999999999999999999998778999999999755688999999999999999876
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-43 Score=363.77 Aligned_cols=218 Identities=28% Similarity=0.550 Sum_probs=188.0
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (746)
.++++||+++| +++.+|+|+||++++||+++|+||||||||||+++|+|.. ++.+|+|.++|.++..
T Consensus 3 ~l~~~~l~~~~--------~~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~--~~~~G~i~~~g~~~~~~~~ 72 (241)
T PRK10895 3 TLTAKNLAKAY--------KGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIV--PRDAGNIIIDDEDISLLPL 72 (241)
T ss_pred eEEEeCcEEEe--------CCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC--CCCCcEEEECCEECCCCCH
Confidence 58999999998 2357999999999999999999999999999999999964 3568999999998742
Q ss_pred --hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHH
Q 004537 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (746)
Q Consensus 226 --~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqR 303 (746)
..++.++|++|++.+++.+||+||+.+..... .....++.+.+++++++.+|+.+..+. .++.||||||||
T Consensus 73 ~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qr 145 (241)
T PRK10895 73 HARARRGIGYLPQEASIFRRLSVYDNLMAVLQIR--DDLSAEQREDRANELMEEFHIEHLRDS-----MGQSLSGGERRR 145 (241)
T ss_pred HHHHHhCeEEeccCCcccccCcHHHHHhhhhhcc--cccCHHHHHHHHHHHHHHcCCHHHhhc-----chhhCCHHHHHH
Confidence 23567999999999998899999998864322 112334455678899999999765554 346899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHH
Q 004537 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (746)
Q Consensus 304 v~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 383 (746)
|+|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|++. ++.+.||++++|++|++++.|+++++
T Consensus 146 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~ 224 (241)
T PRK10895 146 VEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVR-ETLAVCERAYIVSQGHLIAHGTPTEI 224 (241)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHH-HHHHhcCEEEEEeCCeEEeeCCHHHH
Confidence 99999999999999999999999999999999999999877999999999975 57789999999999999999998876
Q ss_pred H
Q 004537 384 M 384 (746)
Q Consensus 384 ~ 384 (746)
.
T Consensus 225 ~ 225 (241)
T PRK10895 225 L 225 (241)
T ss_pred h
Confidence 4
|
|
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-45 Score=420.64 Aligned_cols=325 Identities=22% Similarity=0.280 Sum_probs=224.3
Q ss_pred HHHHHHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeeccccccceecchhchhhh
Q 004537 11 ARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSGAA 90 (746)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 90 (746)
.++.++..++..+...|...+.+|+|+++.+....+++.+......+...+.....+...........-..+.-+..|+.
T Consensus 182 ~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 261 (529)
T TIGR02868 182 EVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERRAARATGLGAAAQLLAAGLAVLGALWAGGP 261 (529)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456667888889999999999999999999999988877665554433211111111011111111112333457888
Q ss_pred hhhhcccccchhhhhccccc----ChhhhccC-------CCCCCCCCcccccccCCC----CCCCCCCCCCCceEEEEeE
Q 004537 91 LSRASSASLGLSFSFTGFTM----PPDEIADS-------KPFSDDDIPEDIEAGTRE----RPKFQTEPTLPIYLKFTDV 155 (746)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~-------~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~nv 155 (746)
++..|.++.|.+.++..+.. |...+... .. +..++.+.++..+.. .+.....+.....++|+||
T Consensus 262 ~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~v 340 (529)
T TIGR02868 262 AVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRA-AAERIEEVTGAKGPRPEGVVPAAGALGLGKPTLELRDL 340 (529)
T ss_pred HHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCCCCcCCCCCCCCcccCCCCceEEEEEE
Confidence 88888888888777765432 21111110 00 001111111111100 0000001112236999999
Q ss_pred EEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---hccCcEE
Q 004537 156 TYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---SLKSKIG 232 (746)
Q Consensus 156 s~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---~~~~~i~ 232 (746)
+|+|+ +++++|+|+|+++++||.+||+||||||||||+|+|+|. ++ +.+|+|.+||+|+.+ .+|++|+
T Consensus 341 sf~Y~-------~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~-~~-p~~G~I~i~g~~i~~~~~~lr~~i~ 411 (529)
T TIGR02868 341 SFGYP-------GSPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGL-LD-PLQGEVTLDGVSVSSLQDELRRRIS 411 (529)
T ss_pred EEecC-------CCCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcC-CC-CCCcEEEECCEEhhhHHHHHHhheE
Confidence 99993 224699999999999999999999999999999999984 44 458999999998763 5678999
Q ss_pred EEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHH-----HHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHH
Q 004537 233 FVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEK-----RAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (746)
Q Consensus 233 yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~-----~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA 307 (746)
||+|++.+|+. |++|||.++. + +.++++..+ .+++.++. |++..||.+|+.. ..||||||||++||
T Consensus 412 ~V~Q~~~lF~~-TI~eNI~~g~----~-~~~~e~i~~al~~a~l~~~i~~--lp~GldT~ige~G-~~LSGGQrQRiaiA 482 (529)
T TIGR02868 412 VFAQDAHLFDT-TVRDNLRLGR----P-DATDEELWAALERVGLADWLRS--LPDGLDTVLGEGG-ARLSGGERQRLALA 482 (529)
T ss_pred EEccCcccccc-cHHHHHhccC----C-CCCHHHHHHHHHHcCCHHHHHh--Ccccccchhcccc-CcCCHHHHHHHHHH
Confidence 99999999975 9999999863 1 123322221 12233333 4678899998754 56999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCC
Q 004537 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQP 355 (746)
Q Consensus 308 ~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~ 355 (746)
|||+++|+||+||||||+||++++..|.+.|+++. +++|+|+++|++
T Consensus 483 Rall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~-~~~TvIiItHrl 529 (529)
T TIGR02868 483 RALLADAPILLLDEPTEHLDAGTESELLEDLLAAL-SGKTVVVITHHL 529 (529)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEecCC
Confidence 99999999999999999999999999999999874 489999999985
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-42 Score=360.24 Aligned_cols=216 Identities=31% Similarity=0.542 Sum_probs=185.6
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---h
Q 004537 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---S 226 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---~ 226 (746)
++++|++++| +++.+|+|+|++|++||+++|+||||||||||+++|+|.. ++.+|+|.++|.++.. .
T Consensus 2 l~~~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~--~p~~G~i~~~g~~i~~~~~~ 71 (236)
T TIGR03864 2 LEVAGLSFAY--------GARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLY--VAQEGQISVAGHDLRRAPRA 71 (236)
T ss_pred EEEEeeEEEE--------CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCc--CCCceEEEECCEEcccCChh
Confidence 7899999998 2457999999999999999999999999999999999964 3568999999988742 2
Q ss_pred ccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHH
Q 004537 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (746)
Q Consensus 227 ~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~I 306 (746)
.++.++|++|++.+++.+|++||+.+....+ ........+++.++++.+||++..++. +..||||||||++|
T Consensus 72 ~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~G~~qrl~l 143 (236)
T TIGR03864 72 ALARLGVVFQQPTLDLDLSVRQNLRYHAALH---GLSRAEARERIAALLARLGLAERADDK-----VRELNGGHRRRVEI 143 (236)
T ss_pred hhhhEEEeCCCCCCcccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhcCC-----hhhCCHHHHHHHHH
Confidence 3457999999998888899999998865432 123344456788999999998766654 45899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHHH
Q 004537 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (746)
Q Consensus 307 A~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~-~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 385 (746)
||+|+.+|+++||||||+|||+.++..+.+.|+++++ +|+|+|+++|++.. +. .||++++|++|++++.|+++++.+
T Consensus 144 aral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~-~~-~~d~i~~l~~G~i~~~~~~~~~~~ 221 (236)
T TIGR03864 144 ARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDE-IE-ADDRLVVLHRGRVLADGAAAELRG 221 (236)
T ss_pred HHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhh-Hh-hCCEEEEEeCCeEEEeCCHHHHHH
Confidence 9999999999999999999999999999999999975 58999999999864 44 599999999999999999887754
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-42 Score=365.19 Aligned_cols=218 Identities=29% Similarity=0.490 Sum_probs=187.5
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (746)
.|+++||++.| +++.+|+|+||+|++||+++|+||||||||||+++|+|.. ++.+|+|.++|.++..
T Consensus 5 ~l~~~~l~~~~--------~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~--~~~~G~i~~~g~~~~~~~~ 74 (257)
T PRK10619 5 KLNVIDLHKRY--------GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLE--KPSEGSIVVNGQTINLVRD 74 (257)
T ss_pred cEEEeeeEEEE--------CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC--CCCCeEEEECCEEcccccc
Confidence 48999999998 2457999999999999999999999999999999999964 3468999999987631
Q ss_pred --------------hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccc-cccccC
Q 004537 226 --------------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ-DTMIGG 290 (746)
Q Consensus 226 --------------~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-~~~vg~ 290 (746)
..++.++|++|++.+++.+||+||+.++..... .....+.++++.++++.+|+.+.. +.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~---- 148 (257)
T PRK10619 75 KDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL--GLSKQEARERAVKYLAKVGIDERAQGK---- 148 (257)
T ss_pred cccccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHcCCChhhhhC----
Confidence 335789999999999998999999987542111 123445567788999999997653 43
Q ss_pred ccccCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEe
Q 004537 291 SFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG 370 (746)
Q Consensus 291 ~~~~~LSGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~ 370 (746)
.++.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. ++.+.||++++|+
T Consensus 149 -~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~-~~~~~~d~i~~l~ 226 (257)
T PRK10619 149 -YPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSHVIFLH 226 (257)
T ss_pred -CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEE
Confidence 35689999999999999999999999999999999999999999999999877999999999975 4667899999999
Q ss_pred CCeEEEecCHHHHH
Q 004537 371 KGSLLYFGKASEAM 384 (746)
Q Consensus 371 ~G~iv~~G~~~~~~ 384 (746)
+|++++.|+++++.
T Consensus 227 ~G~i~~~~~~~~~~ 240 (257)
T PRK10619 227 QGKIEEEGAPEQLF 240 (257)
T ss_pred CCEEEEeCCHHHhh
Confidence 99999999988764
|
|
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-42 Score=362.32 Aligned_cols=220 Identities=28% Similarity=0.360 Sum_probs=182.6
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh----
Q 004537 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (746)
|+++||+++| +++.+|+|+|++|++||+++|+||||||||||+|+|+|....++.+|+|.++|+++..
T Consensus 1 l~~~~l~~~~--------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~ 72 (243)
T TIGR01978 1 LKIKDLHVSV--------EDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPD 72 (243)
T ss_pred CeEeeEEEEE--------CCEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHH
Confidence 4789999998 2457999999999999999999999999999999999964113568999999998742
Q ss_pred h-ccCcEEEEecCCcCCCCCCHHHHHHHHHhccCC---C-CCcHHHHHHHHHHHHHHcCCCc-cccccccCcccc-CCCH
Q 004537 226 S-LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLP---N-TLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVR-GVSG 298 (746)
Q Consensus 226 ~-~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~---~-~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~-~LSG 298 (746)
. .+..++||+|++.+++.+|++||+.+....... . ..+..+..+++.++++.+||++ ..++. +. +|||
T Consensus 73 ~~~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~~LS~ 147 (243)
T TIGR01978 73 ERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRS-----VNEGFSG 147 (243)
T ss_pred HhhccceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccc-----cccCcCH
Confidence 2 234599999999999999999999886532110 0 1123334567889999999973 44443 33 5999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhc-cCEEEEEeCCeEEEe
Q 004537 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHK-FDKLILLGKGSLLYF 377 (746)
Q Consensus 299 GerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~-~D~i~vL~~G~iv~~ 377 (746)
||||||+|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+... ||++++|++|++++.
T Consensus 148 G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~-~~~~~~~d~i~~l~~G~i~~~ 226 (243)
T TIGR01978 148 GEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQR-LLNYIKPDYVHVLLDGRIVKS 226 (243)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHH-HHHhhcCCeEEEEeCCEEEEe
Confidence 9999999999999999999999999999999999999999999877899999999975 46666 799999999999999
Q ss_pred cCHHHH
Q 004537 378 GKASEA 383 (746)
Q Consensus 378 G~~~~~ 383 (746)
|+++++
T Consensus 227 g~~~~~ 232 (243)
T TIGR01978 227 GDVELA 232 (243)
T ss_pred cCHHHh
Confidence 998754
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-43 Score=381.48 Aligned_cols=207 Identities=26% Similarity=0.462 Sum_probs=183.4
Q ss_pred ccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh----hc----cCcEEEEecCCc
Q 004537 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SL----KSKIGFVTQDDV 239 (746)
Q Consensus 168 ~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~----~~----~~~i~yv~Q~~~ 239 (746)
+++.+|+|+||+|++||+++|+|||||||||||++|+|.. ++.+|+|.++|+++.. .+ ++.++||+|++.
T Consensus 4 ~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~--~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~ 81 (363)
T TIGR01186 4 GGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLI--EPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFA 81 (363)
T ss_pred CCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCC--CCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCc
Confidence 3567999999999999999999999999999999999854 3568999999999853 23 678999999999
Q ss_pred CCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHHHHHhhCCCEEEE
Q 004537 240 LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFL 319 (746)
Q Consensus 240 l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~illL 319 (746)
+||++||+||+.|+.... ..++++..+++.++++.+||++..++ ++..|||||||||+|||||+.+|+||||
T Consensus 82 l~~~~TV~eNi~~~~~~~---~~~~~~~~~~~~~~l~~vgL~~~~~~-----~p~~LSGGq~QRV~lARAL~~~p~iLLl 153 (363)
T TIGR01186 82 LFPHMTILQNTSLGPELL---GWPEQERKEKALELLKLVGLEEYEHR-----YPDELSGGMQQRVGLARALAAEPDILLM 153 (363)
T ss_pred CCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCchhhhC-----ChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999999986543 23456667789999999999876665 4568999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHHH
Q 004537 320 DEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (746)
Q Consensus 320 DEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 385 (746)
||||+|||+.++..+.+.|+++.++ |+|||++||++. ++.+.||+|++|++|++++.|++++++.
T Consensus 154 DEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~-ea~~~~drI~vl~~G~iv~~g~~~ei~~ 219 (363)
T TIGR01186 154 DEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLD-EAIRIGDRIVIMKAGEIVQVGTPDEILR 219 (363)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCEEEeeCCHHHHHh
Confidence 9999999999999999999999764 899999999975 5778999999999999999999998753
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-43 Score=356.65 Aligned_cols=206 Identities=33% Similarity=0.517 Sum_probs=177.8
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh----
Q 004537 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (746)
++++|++++|. +++.+|+|+||+|++||+++|+||||||||||+++|+|.. ++.+|+|.++|+++..
T Consensus 2 l~~~~l~~~~~-------~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~--~~~~G~i~~~g~~~~~~~~~ 72 (214)
T TIGR02673 2 IEFHNVSKAYP-------GGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGAL--TPSRGQVRIAGEDVNRLRGR 72 (214)
T ss_pred EEEEeeeEEeC-------CCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC--CCCCceEEECCEEcccCCHH
Confidence 78999999882 2357999999999999999999999999999999999964 3468999999998742
Q ss_pred ---hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHH
Q 004537 226 ---SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (746)
Q Consensus 226 ---~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerq 302 (746)
.+++.++|++|++.+++.+||+||+.+..... .......+++++++++.++|.+..++. +..|||||||
T Consensus 73 ~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~q 144 (214)
T TIGR02673 73 QLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVR---GKKEREIQRRVGAALRQVGLEHKADAF-----PEQLSGGEQQ 144 (214)
T ss_pred HHHHHHhheEEEecChhhccCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCC-----hhhCCHHHHH
Confidence 24568999999999998899999999875432 123344556788999999998766554 4689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCe
Q 004537 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGS 373 (746)
Q Consensus 303 Rv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~ 373 (746)
|++|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. ++.+.||++++|++|+
T Consensus 145 rl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 145 RVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLS-LVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEecCCC
Confidence 999999999999999999999999999999999999999777999999999975 5777899999999985
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-42 Score=362.78 Aligned_cols=224 Identities=24% Similarity=0.396 Sum_probs=186.5
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCC---CCccEEEECCEeCCh
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP---TVGGSITYNDHPYSK 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~---~~~G~I~~~G~~~~~ 225 (746)
.++++||+++| +++.+|+|+||+|++||+++|+||||||||||+++|+|..... +.+|+|.++|.++..
T Consensus 3 ~l~~~~l~~~~--------~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~ 74 (250)
T PRK14247 3 KIEIRDLKVSF--------GQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFK 74 (250)
T ss_pred eEEEEeeEEEE--------CCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCc
Confidence 48999999998 2356999999999999999999999999999999999965321 358999999998742
Q ss_pred ----hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHH
Q 004537 226 ----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301 (746)
Q Consensus 226 ----~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGer 301 (746)
.+++.|+|++|++.+++.+||+||+.++...... .....+..+.+.++++.+||.+..+.. -+..+.+||||||
T Consensus 75 ~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~~~~LSgG~~ 152 (250)
T PRK14247 75 MDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRL-VKSKKELQERVRWALEKAQLWDEVKDR-LDAPAGKLSGGQQ 152 (250)
T ss_pred CCHHHHhccEEEEeccCccCCCCcHHHHHHHHHHhccc-cCCHHHHHHHHHHHHHHcCCCcchhhh-hcCCcccCCHHHH
Confidence 3467899999999888889999999987542211 112344456788999999986422111 1234578999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHH
Q 004537 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 381 (746)
Q Consensus 302 qRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 381 (746)
|||+|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ |+|+|+++|++. ++.+.||++++|++|++++.|+++
T Consensus 153 qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~ 230 (250)
T PRK14247 153 QRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKK-DMTIVLVTHFPQ-QAARISDYVAFLYKGQIVEWGPTR 230 (250)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCEEEEEECCeEEEECCHH
Confidence 999999999999999999999999999999999999999865 899999999976 467889999999999999999998
Q ss_pred HHH
Q 004537 382 EAM 384 (746)
Q Consensus 382 ~~~ 384 (746)
++.
T Consensus 231 ~~~ 233 (250)
T PRK14247 231 EVF 233 (250)
T ss_pred HHH
Confidence 874
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-42 Score=359.22 Aligned_cols=216 Identities=30% Similarity=0.504 Sum_probs=181.9
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (746)
.++++||+++|..+ ...+++|+|+||+|++||+++|+||||||||||+++|+|.. ++.+|+|.++|+++..
T Consensus 5 ~l~~~~l~~~~~~~----~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~--~~~~G~i~~~g~~i~~~~~ 78 (233)
T PRK11629 5 LLQCDNLCKRYQEG----SVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLD--TPTSGDVIFNGQPMSKLSS 78 (233)
T ss_pred eEEEEeEEEEcCCC----CcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCC--CCCceEEEECCEEcCcCCH
Confidence 58999999998310 01257999999999999999999999999999999999964 3468999999998742
Q ss_pred ----hc-cCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHH
Q 004537 226 ----SL-KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGE 300 (746)
Q Consensus 226 ----~~-~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGe 300 (746)
.. ++.++|++|++.+++.+||+||+.+..... .....+.++++.++++.+||++..++. ++.|||||
T Consensus 79 ~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgG~ 150 (233)
T PRK11629 79 AAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIG---KKKPAEINSRALEMLAAVGLEHRANHR-----PSELSGGE 150 (233)
T ss_pred HHHHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCC-----hhhCCHHH
Confidence 12 257999999999999999999999875432 123344556788999999998766653 46899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecC
Q 004537 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (746)
Q Consensus 301 rqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~-~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (746)
|||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ +|+|||++||++.. + ..+|++++|++|++++.|+
T Consensus 151 ~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~-~-~~~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 151 RQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQL-A-KRMSRQLEMRDGRLTAELS 228 (233)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-H-HhhCEEEEEECCEEEEEec
Confidence 9999999999999999999999999999999999999999975 58999999999754 4 4468999999999998886
Q ss_pred H
Q 004537 380 A 380 (746)
Q Consensus 380 ~ 380 (746)
.
T Consensus 229 ~ 229 (233)
T PRK11629 229 L 229 (233)
T ss_pred c
Confidence 3
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-42 Score=370.78 Aligned_cols=222 Identities=23% Similarity=0.432 Sum_probs=187.2
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (746)
.++++||+++|..+ ....+++|+|||++|++||+++|+||||||||||+++|+|.. ++.+|+|.++|+++..
T Consensus 2 ~l~~~~l~~~y~~~---~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~--~p~~G~i~~~g~~i~~~~~ 76 (286)
T PRK13646 2 TIRFDNVSYTYQKG---TPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALL--KPTTGTVTVDDITITHKTK 76 (286)
T ss_pred EEEEEEEEEEECCC---CccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC--CCCCcEEEECCEECccccc
Confidence 48999999999311 011246999999999999999999999999999999999954 3468999999998742
Q ss_pred -----hccCcEEEEecCC--cCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCC-ccccccccCccccCCC
Q 004537 226 -----SLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVS 297 (746)
Q Consensus 226 -----~~~~~i~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LS 297 (746)
..++.||||+|++ .+++ .||.||+.++.... ..+..+..+++.++++.+||. +..++ .++.||
T Consensus 77 ~~~~~~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~~LS 147 (286)
T PRK13646 77 DKYIRPVRKRIGMVFQFPESQLFE-DTVEREIIFGPKNF---KMNLDEVKNYAHRLLMDLGFSRDVMSQ-----SPFQMS 147 (286)
T ss_pred cchHHHHHhheEEEecChHhccch-hhHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhC-----CcccCC
Confidence 3567899999986 4666 59999999875432 234555667789999999996 55554 356899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCChHHHhccCEEEEEeCCeEEE
Q 004537 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (746)
Q Consensus 298 GGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~-~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~ 376 (746)
||||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++.+ .|+|||++||++. ++.+.||++++|++|++++
T Consensus 148 gGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~-~~~~~~dri~~l~~G~i~~ 226 (286)
T PRK13646 148 GGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMN-EVARYADEVIVMKEGSIVS 226 (286)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999975 4899999999975 4678899999999999999
Q ss_pred ecCHHHHHH
Q 004537 377 FGKASEAMA 385 (746)
Q Consensus 377 ~G~~~~~~~ 385 (746)
.|+++++.+
T Consensus 227 ~g~~~~~~~ 235 (286)
T PRK13646 227 QTSPKELFK 235 (286)
T ss_pred ECCHHHHHh
Confidence 999988653
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-42 Score=376.93 Aligned_cols=227 Identities=24% Similarity=0.423 Sum_probs=190.9
Q ss_pred eEEEEeEEEEEeeccc-----cccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeC
Q 004537 149 YLKFTDVTYKVILKGM-----TSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY 223 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~-----~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~ 223 (746)
.|+++||+++|..++. ...+...+|+||||+|++||+++|+|+||||||||+++|+|.+. +.+|+|.++|+++
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~--p~~G~I~~~G~~i 85 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVK--ATDGEVAWLGKDL 85 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCcEEEECCEEC
Confidence 6999999999843110 00123579999999999999999999999999999999999653 4689999999987
Q ss_pred Ch-------hccCcEEEEecCC--cCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCC-ccccccccCccc
Q 004537 224 SK-------SLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFV 293 (746)
Q Consensus 224 ~~-------~~~~~i~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~ 293 (746)
.. .++++|+||+|++ .++|.+||.||+.+......+ ..++++.++++.++++.+||. +..+ .++
T Consensus 86 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~-~~~~~~~~~~~~~~l~~vgl~~~~~~-----~~p 159 (331)
T PRK15079 86 LGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHP-KLSRQEVKDRVKAMMLKVGLLPNLIN-----RYP 159 (331)
T ss_pred CcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHcCCChHHhc-----CCc
Confidence 42 2457899999997 588899999999987543211 245566677888999999995 3334 456
Q ss_pred cCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCC
Q 004537 294 RGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKG 372 (746)
Q Consensus 294 ~~LSGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G 372 (746)
++|||||||||+|||||+.+|++||+||||+|||+.++.++++.|+++.++ |.|+|++|||+. .+.++||+|++|++|
T Consensus 160 ~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~-~~~~~~dri~vl~~G 238 (331)
T PRK15079 160 HEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLA-VVKHISDRVLVMYLG 238 (331)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECC
Confidence 799999999999999999999999999999999999999999999999765 899999999975 467789999999999
Q ss_pred eEEEecCHHHHH
Q 004537 373 SLLYFGKASEAM 384 (746)
Q Consensus 373 ~iv~~G~~~~~~ 384 (746)
++++.|+++++.
T Consensus 239 ~ive~g~~~~i~ 250 (331)
T PRK15079 239 HAVELGTYDEVY 250 (331)
T ss_pred EEEEEcCHHHHH
Confidence 999999998875
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-43 Score=361.72 Aligned_cols=215 Identities=24% Similarity=0.433 Sum_probs=183.5
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (746)
.++++||+++| +++.+|+|+||+|++||+++|+||||||||||+++|+|.. ++.+|+|.++|+++..
T Consensus 5 ~l~~~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~--~p~~G~i~~~g~~~~~~~~ 74 (237)
T PRK11614 5 MLSFDKVSAHY--------GKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDP--RATSGRIVFDGKDITDWQT 74 (237)
T ss_pred EEEEEeEEEee--------CCceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCC--CCCCceEEECCEecCCCCH
Confidence 58999999998 2457999999999999999999999999999999999954 3568999999998742
Q ss_pred --hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHc-CCCccccccccCccccCCCHHHHH
Q 004537 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL-GLERCQDTMIGGSFVRGVSGGERK 302 (746)
Q Consensus 226 --~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l-gL~~~~~~~vg~~~~~~LSGGerq 302 (746)
..++.++|++|++.+++.+||+||+.++.... ......+.++++++.+ ++.+..++ .++.|||||||
T Consensus 75 ~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~~l~~~~~~-----~~~~LS~G~~q 144 (237)
T PRK11614 75 AKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFA-----ERDQFQERIKWVYELFPRLHERRIQ-----RAGTMSGGEQQ 144 (237)
T ss_pred HHHHHhCEEEeccCcccCCCCcHHHHHHHhhhcc-----ChhHHHHHHHHHHHHHHHHHHHHhC-----chhhCCHHHHH
Confidence 24567999999999999899999998864221 1222334566777777 46654443 34689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHH
Q 004537 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (746)
Q Consensus 303 Rv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~ 382 (746)
|++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. ++.+.||++++|++|++++.|++++
T Consensus 145 rl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~ 223 (237)
T PRK11614 145 MLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNAN-QALKLADRGYVLENGHVVLEDTGDA 223 (237)
T ss_pred HHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHhhCCEEEEEeCCEEEeeCCHHH
Confidence 999999999999999999999999999999999999999877999999999975 5778999999999999999999988
Q ss_pred HH
Q 004537 383 AM 384 (746)
Q Consensus 383 ~~ 384 (746)
+.
T Consensus 224 ~~ 225 (237)
T PRK11614 224 LL 225 (237)
T ss_pred Hh
Confidence 74
|
|
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-42 Score=371.84 Aligned_cols=221 Identities=25% Similarity=0.453 Sum_probs=186.4
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCC----
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---- 224 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~---- 224 (746)
.|+++||+++|..+. .....+|+|+|++|++||+++|+||||||||||+++|+|.+ ++.+|+|.++|.+..
T Consensus 2 ~i~~~~l~~~y~~~~---~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~--~p~~G~i~~~g~~~~~~~~ 76 (305)
T PRK13651 2 QIKVKNIVKIFNKKL---PTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALL--LPDTGTIEWIFKDEKNKKK 76 (305)
T ss_pred EEEEEEEEEEECCCC---CccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCC--CCCCcEEEEeceecccccc
Confidence 389999999993210 11246999999999999999999999999999999999964 346899999987541
Q ss_pred ------------------------hhccCcEEEEecCC--cCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHc
Q 004537 225 ------------------------KSLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL 278 (746)
Q Consensus 225 ------------------------~~~~~~i~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l 278 (746)
..+++.||||+|++ .++ ..||+|||.|+.... ..++++..+++.++++.+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~-~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~ 152 (305)
T PRK13651 77 TKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLF-EQTIEKDIIFGPVSM---GVSKEEAKKRAAKYIELV 152 (305)
T ss_pred cccccccccccccccccccccchHHHHHhceEEEeeCcccccc-cccHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHc
Confidence 13467899999985 455 469999999876432 245556677889999999
Q ss_pred CCC-ccccccccCccccCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCh
Q 004537 279 GLE-RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSS 357 (746)
Q Consensus 279 gL~-~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~ 357 (746)
||+ +..++ .+..|||||||||+||++|+.+|++|||||||+|||+.++..+++.|++++++|+|||++||++.
T Consensus 153 gL~~~~~~~-----~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~- 226 (305)
T PRK13651 153 GLDESYLQR-----SPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLD- 226 (305)
T ss_pred CCChhhhhC-----ChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHH-
Confidence 996 45554 45789999999999999999999999999999999999999999999999877999999999965
Q ss_pred HHHhccCEEEEEeCCeEEEecCHHHHH
Q 004537 358 RLFHKFDKLILLGKGSLLYFGKASEAM 384 (746)
Q Consensus 358 ~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (746)
.+.+.||+|++|++|++++.|+++++.
T Consensus 227 ~~~~~adrv~vl~~G~i~~~g~~~~~~ 253 (305)
T PRK13651 227 NVLEWTKRTIFFKDGKIIKDGDTYDIL 253 (305)
T ss_pred HHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 477899999999999999999998874
|
|
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-43 Score=355.28 Aligned_cols=221 Identities=27% Similarity=0.487 Sum_probs=195.7
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (746)
.++.+||+++| +.-.+++|||+++++||+++|+||||||||||+|+|+|.+ . +++|+|.++|++++.
T Consensus 4 lL~v~~l~k~F--------GGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~-~-P~~G~v~~~G~~it~l~p 73 (250)
T COG0411 4 LLEVRGLSKRF--------GGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFY-K-PSSGTVIFRGRDITGLPP 73 (250)
T ss_pred eeeeccceeec--------CCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccc-c-CCCceEEECCcccCCCCH
Confidence 58899999988 6778999999999999999999999999999999999964 3 568999999999863
Q ss_pred --hccCcEEEEecCCcCCCCCCHHHHHHHHHhccC--------CCC-CcHHHHHHHHHHHHHHcCCCccccccccCcccc
Q 004537 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRL--------PNT-LTKQQKEKRAIDVINELGLERCQDTMIGGSFVR 294 (746)
Q Consensus 226 --~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~--------~~~-~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 294 (746)
..+..|+--||...+|++|||.||+..++..+. +.. -..++..+++.++|+.+||.+.+|+..|
T Consensus 74 ~~iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~----- 148 (250)
T COG0411 74 HRIARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAG----- 148 (250)
T ss_pred HHHHhccceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhh-----
Confidence 235678999999999999999999999865331 111 1245667789999999999999998764
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCe
Q 004537 295 GVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGS 373 (746)
Q Consensus 295 ~LSGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~ 373 (746)
+||+|||||+.|||||+.+|++|+||||.+||.+....++.+.|+++.++ |.||++|-||+. .++.+||||+||+.|+
T Consensus 149 ~LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~-~Vm~l~dri~Vl~~G~ 227 (250)
T COG0411 149 NLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMK-LVMGLADRIVVLNYGE 227 (250)
T ss_pred cCChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccH-HHhhhccEEEeccCCc
Confidence 79999999999999999999999999999999999999999999999874 699999999976 5899999999999999
Q ss_pred EEEecCHHHHHH
Q 004537 374 LLYFGKASEAMA 385 (746)
Q Consensus 374 iv~~G~~~~~~~ 385 (746)
++..|+|+|+.+
T Consensus 228 ~IAeG~P~eV~~ 239 (250)
T COG0411 228 VIAEGTPEEVRN 239 (250)
T ss_pred CcccCCHHHHhc
Confidence 999999999753
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-42 Score=363.72 Aligned_cols=217 Identities=32% Similarity=0.514 Sum_probs=186.3
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh----
Q 004537 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (746)
|+++||++.| +++.+|+|+||+|++||+++|+||||||||||+|+|+|.. ++.+|+|.++|+++..
T Consensus 1 i~~~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~--~~~~G~i~~~g~~i~~~~~~ 70 (252)
T TIGR03005 1 VRFSDVTKRF--------GILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLE--PIDEGQIQVEGEQLYHMPGR 70 (252)
T ss_pred CEEEEEEEEe--------CCeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC--CCCceEEEECCEEccccccc
Confidence 4789999998 2357999999999999999999999999999999999964 3468999999987631
Q ss_pred -------------hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCcc
Q 004537 226 -------------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSF 292 (746)
Q Consensus 226 -------------~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~ 292 (746)
..++.++|++|++.+++.+||.||+.++.... .........+.+.++++.+|+.+..+..
T Consensus 71 ~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~----- 143 (252)
T TIGR03005 71 NGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLV--LGMARAEAEKRAMELLDMVGLADKADHM----- 143 (252)
T ss_pred cccccccchhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHcCChhHhhcC-----
Confidence 24678999999999999899999999864211 1123444556788999999998766643
Q ss_pred ccCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeC
Q 004537 293 VRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGK 371 (746)
Q Consensus 293 ~~~LSGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~ 371 (746)
++.||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++.++ |+|+|++||++. ++.+.||++++|++
T Consensus 144 ~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~ 222 (252)
T TIGR03005 144 PAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMG-FAREFADRVCFFDK 222 (252)
T ss_pred hhhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEEEEEEC
Confidence 4689999999999999999999999999999999999999999999999765 899999999975 46788999999999
Q ss_pred CeEEEecCHHHHH
Q 004537 372 GSLLYFGKASEAM 384 (746)
Q Consensus 372 G~iv~~G~~~~~~ 384 (746)
|++++.|+++++.
T Consensus 223 G~i~~~g~~~~~~ 235 (252)
T TIGR03005 223 GRIVEQGKPDEIF 235 (252)
T ss_pred CEEEEeCCHHHHh
Confidence 9999999988764
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-42 Score=360.79 Aligned_cols=216 Identities=29% Similarity=0.481 Sum_probs=185.4
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCC----
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---- 224 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~---- 224 (746)
.++++|+++.| +++.+|+|+|+++++||+++|+||||||||||+|+|+|.. ++.+|+|.++|.++.
T Consensus 2 ~l~~~~l~~~~--------~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~--~~~~G~i~~~g~~~~~~~~ 71 (242)
T PRK11124 2 SIQLNGINCFY--------GAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLE--MPRSGTLNIAGNHFDFSKT 71 (242)
T ss_pred EEEEEeeEEEE--------CCeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCC--CCCceEEEECCEecccccc
Confidence 48899999998 2357999999999999999999999999999999999954 356899999999762
Q ss_pred ------hhccCcEEEEecCCcCCCCCCHHHHHHHHH-hccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCC
Q 004537 225 ------KSLKSKIGFVTQDDVLFPHLTVKETLTYAA-LLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVS 297 (746)
Q Consensus 225 ------~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~-~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS 297 (746)
...++.++|++|++.+++.+||.||+.+.. ... .....+..+++.++++.+||++..++. ++.||
T Consensus 72 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LS 143 (242)
T PRK11124 72 PSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVL---GLSKDQALARAEKLLERLRLKPYADRF-----PLHLS 143 (242)
T ss_pred cchhhHHHHHhheEEEecCccccCCCcHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCC-----hhhCC
Confidence 124568999999999999999999997532 211 123344456788999999998766654 46899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEe
Q 004537 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (746)
Q Consensus 298 GGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~ 377 (746)
||||||++|||+|+.+|+++||||||+|||+.++..+.+.|+++.++|+|+|+++|++. ++.+.||++++|++|++++.
T Consensus 144 ~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~~~~~d~i~~l~~g~i~~~ 222 (242)
T PRK11124 144 GGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVE-VARKTASRVVYMENGHIVEQ 222 (242)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEEECCEEEEe
Confidence 99999999999999999999999999999999999999999999877999999999975 46678999999999999999
Q ss_pred cCHHHH
Q 004537 378 GKASEA 383 (746)
Q Consensus 378 G~~~~~ 383 (746)
|++++.
T Consensus 223 ~~~~~~ 228 (242)
T PRK11124 223 GDASCF 228 (242)
T ss_pred CCHHHh
Confidence 998764
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-42 Score=355.73 Aligned_cols=207 Identities=34% Similarity=0.522 Sum_probs=177.8
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh----
Q 004537 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (746)
++++|++++|. +.+.+|+|+|+++++||+++|+||||||||||+++|+|.. ++.+|+|.++|+++..
T Consensus 1 l~~~~l~~~~~-------~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~--~~~~G~i~~~g~~i~~~~~~ 71 (214)
T cd03292 1 IEFINVTKTYP-------NGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEE--LPTSGTIRVNGQDVSDLRGR 71 (214)
T ss_pred CEEEEEEEEeC-------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC--CCCceEEEECCEEcccCCHH
Confidence 46899999882 1257999999999999999999999999999999999954 3568999999998742
Q ss_pred ---hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHH
Q 004537 226 ---SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (746)
Q Consensus 226 ---~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerq 302 (746)
..++.++|++|++.+++.+|++||+.+....+ ....++..+++.++++.+||++..++. +++|||||||
T Consensus 72 ~~~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~q 143 (214)
T cd03292 72 AIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVT---GVPPREIRKRVPAALELVGLSHKHRAL-----PAELSGGEQQ 143 (214)
T ss_pred HHHHHHHheEEEecCchhccCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCC-----hhhcCHHHHH
Confidence 24567999999999999999999999875432 123444556788999999998766654 4689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeE
Q 004537 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (746)
Q Consensus 303 Rv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~i 374 (746)
|++|||+|+.+|+++||||||+|||+.++..+.+.|++++++|+|||++||++. .+.+.||++++|++|++
T Consensus 144 rv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~-~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 144 RVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKE-LVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999999999999999777999999999975 46678999999999974
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-42 Score=368.76 Aligned_cols=218 Identities=29% Similarity=0.527 Sum_probs=187.3
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCC----
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---- 224 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~---- 224 (746)
.|+++||+++|. .++.+|+|+|++|++||+++|+||||||||||+++|+|.. ++.+|+|.++|.++.
T Consensus 5 ~l~~~~l~~~~~-------~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~--~p~~G~i~i~g~~~~~~~~ 75 (283)
T PRK13636 5 ILKVEELNYNYS-------DGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGIL--KPSSGRILFDGKPIDYSRK 75 (283)
T ss_pred eEEEEeEEEEeC-------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC--CCCccEEEECCEECCCCcc
Confidence 699999999982 2356999999999999999999999999999999999954 356899999999873
Q ss_pred --hhccCcEEEEecCCc--CCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHH
Q 004537 225 --KSLKSKIGFVTQDDV--LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGE 300 (746)
Q Consensus 225 --~~~~~~i~yv~Q~~~--l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGe 300 (746)
..+++.++|++|++. ++ ..||+||+.++.... ..+..+..++++++++.+||.+..++. ++.|||||
T Consensus 76 ~~~~~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~LS~G~ 146 (283)
T PRK13636 76 GLMKLRESVGMVFQDPDNQLF-SASVYQDVSFGAVNL---KLPEDEVRKRVDNALKRTGIEHLKDKP-----THCLSFGQ 146 (283)
T ss_pred hHHHHHhhEEEEecCcchhhc-cccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhhhhCC-----cccCCHHH
Confidence 135678999999973 44 479999999865422 234455566789999999998766654 56899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecC
Q 004537 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (746)
Q Consensus 301 rqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (746)
|||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.+.||++++|++|++++.|+
T Consensus 147 ~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~-~~~~~~dri~~l~~G~i~~~g~ 225 (283)
T PRK13636 147 KKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDID-IVPLYCDNVFVMKEGRVILQGN 225 (283)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999875 899999999975 4667899999999999999999
Q ss_pred HHHHHH
Q 004537 380 ASEAMA 385 (746)
Q Consensus 380 ~~~~~~ 385 (746)
++++..
T Consensus 226 ~~~~~~ 231 (283)
T PRK13636 226 PKEVFA 231 (283)
T ss_pred HHHHhc
Confidence 988754
|
|
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-44 Score=419.03 Aligned_cols=355 Identities=23% Similarity=0.326 Sum_probs=247.4
Q ss_pred HhHHHHHHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeeccccccceecchhchh
Q 004537 9 SLARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSG 88 (746)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 88 (746)
+.++..++...+..+...+.....+++|+++.+....+++.+..........+....................+.-+..|
T Consensus 184 ~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 263 (576)
T TIGR02204 184 KLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTRALLTAIVIVLVFGAIVGVLWVG 263 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677888888999999999999999999988888888766544333221110000000001111111223334567
Q ss_pred hhhhhhcccccchhhhhccccc----ChhhhccC-------CCCCCCCCcccccccCC-C-CCCCCC-CCCCCceEEEEe
Q 004537 89 AALSRASSASLGLSFSFTGFTM----PPDEIADS-------KPFSDDDIPEDIEAGTR-E-RPKFQT-EPTLPIYLKFTD 154 (746)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~-------~~~~~~~~~~~~~~~~~-~-~~~~~~-~~~~~~~l~~~n 154 (746)
+.++..++++.|....+..+.. |...+... .+ +..++.+.+...+. . ...... .......++++|
T Consensus 264 ~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~-~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~ 342 (576)
T TIGR02204 264 AHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAG-AAERLIELLQAEPDIKAPAHPKTLPVPLRGEIEFEQ 342 (576)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCCCCcCCCCCCCccCCcCCCceEEEEE
Confidence 7777778888887766653332 22211110 00 00111111110000 0 000000 001123599999
Q ss_pred EEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh----hccCc
Q 004537 155 VTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSK 230 (746)
Q Consensus 155 vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~----~~~~~ 230 (746)
|+|+|+. ..++.+|+|+|++++|||.++|+||||||||||+|+|+|.. + +.+|+|.+||.++++ .++++
T Consensus 343 v~f~y~~-----~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~-~-p~~G~I~i~g~~i~~~~~~~~~~~ 415 (576)
T TIGR02204 343 VNFAYPA-----RPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFY-D-PQSGRILLDGVDLRQLDPAELRAR 415 (576)
T ss_pred EEEECCC-----CCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhcc-C-CCCCEEEECCEEHHhcCHHHHHHh
Confidence 9999831 12367999999999999999999999999999999999954 3 458999999998753 46788
Q ss_pred EEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCC-------CccccccccCccccCCCHHHHHH
Q 004537 231 IGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL-------ERCQDTMIGGSFVRGVSGGERKR 303 (746)
Q Consensus 231 i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~vg~~~~~~LSGGerqR 303 (746)
++|+||++.+|+ .|++|||.++. ++ .++ +++.+.++..++ ++..||.+|+. ...||||||||
T Consensus 416 i~~~~Q~~~lf~-~Ti~~Ni~~~~----~~-~~~----~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~-g~~LSgGq~Qr 484 (576)
T TIGR02204 416 MALVPQDPVLFA-ASVMENIRYGR----PD-ATD----EEVEAAARAAHAHEFISALPEGYDTYLGER-GVTLSGGQRQR 484 (576)
T ss_pred ceEEccCCcccc-ccHHHHHhcCC----CC-CCH----HHHHHHHHHcCcHHHHHhCCCCCCceeCCC-CCcCCHHHHHH
Confidence 999999999997 49999998852 11 222 234444444443 45667888754 45799999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHH
Q 004537 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (746)
Q Consensus 304 v~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 383 (746)
++|||+++++|++|+||||||+||+.+++.+++.|+++. +++|+|++||+++ ..+.+|+|++|++|++++.|+++++
T Consensus 485 l~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~-~~~t~IiitH~~~--~~~~~d~vi~l~~g~~~~~g~~~~l 561 (576)
T TIGR02204 485 IAIARAILKDAPILLLDEATSALDAESEQLVQQALETLM-KGRTTLIIAHRLA--TVLKADRIVVMDQGRIVAQGTHAEL 561 (576)
T ss_pred HHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHh-CCCEEEEEecchH--HHHhCCEEEEEECCEEEeeecHHHH
Confidence 999999999999999999999999999999999999985 4899999999975 4578999999999999999999987
Q ss_pred HH
Q 004537 384 MA 385 (746)
Q Consensus 384 ~~ 385 (746)
.+
T Consensus 562 ~~ 563 (576)
T TIGR02204 562 IA 563 (576)
T ss_pred HH
Confidence 54
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-43 Score=355.79 Aligned_cols=208 Identities=30% Similarity=0.590 Sum_probs=179.4
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---h
Q 004537 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---S 226 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---~ 226 (746)
|+++|++++| +++++|+|+||++++| +++|+||||||||||+++|+|.+ ++.+|+|.++|.++.. .
T Consensus 1 i~~~~~~~~~--------~~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~--~~~~G~i~~~g~~~~~~~~~ 69 (211)
T cd03264 1 LQLENLTKRY--------GKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLT--PPSSGTIRIDGQDVLKQPQK 69 (211)
T ss_pred CEEEEEEEEE--------CCEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCC--CCCccEEEECCCccccchHH
Confidence 4789999998 2347999999999999 99999999999999999999954 3468999999987642 3
Q ss_pred ccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHH
Q 004537 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (746)
Q Consensus 227 ~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~I 306 (746)
+++.++|++|++.+|+.+||+||+.+..... ...+++..++++++++.+||++..++. +..||||||||++|
T Consensus 70 ~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~l 141 (211)
T cd03264 70 LRRRIGYLPQEFGVYPNFTVREFLDYIAWLK---GIPSKEVKARVDEVLELVNLGDRAKKK-----IGSLSGGMRRRVGI 141 (211)
T ss_pred HHhheEEecCCCcccccCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHHHCCCHHHHhCc-----hhhCCHHHHHHHHH
Confidence 4678999999999999899999999865432 123334456788999999998766654 46899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEec
Q 004537 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (746)
Q Consensus 307 A~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G 378 (746)
||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|++. .+.+.+|++++|++|++++.|
T Consensus 142 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~-~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 142 AQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE-DRIVILSTHIVE-DVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEcCCHH-HHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999999999999999999976 699999999975 466789999999999998765
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-42 Score=362.40 Aligned_cols=218 Identities=23% Similarity=0.374 Sum_probs=183.5
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCC---CCccEEEECCEeCCh
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP---TVGGSITYNDHPYSK 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~---~~~G~I~~~G~~~~~ 225 (746)
.++++|++++| +++.+|+|+||+|++||+++|+||||||||||+|+|+|..... +.+|+|.++|+++..
T Consensus 7 ~l~~~~l~~~~--------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~ 78 (254)
T PRK14273 7 IIETENLNLFY--------TDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYS 78 (254)
T ss_pred eEEEeeeEEEe--------CCceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEeccc
Confidence 69999999998 2356999999999999999999999999999999999965321 248999999988631
Q ss_pred ------hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCC----ccccccccCccccC
Q 004537 226 ------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE----RCQDTMIGGSFVRG 295 (746)
Q Consensus 226 ------~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~vg~~~~~~ 295 (746)
..++.++|++|++.+++ +||+||+.++..... .......++++.+.++.+++. +..++ .++.
T Consensus 79 ~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~-----~~~~ 150 (254)
T PRK14273 79 NNFDILELRRKIGMVFQTPNPFL-MSIYDNISYGPKIHG--TKDKKKLDEIVEQSLKKSALWNEVKDKLNT-----NALS 150 (254)
T ss_pred ccccHHHHhhceEEEeecccccc-CcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHhCCchhhHHHHhC-----Cccc
Confidence 34678999999998885 899999998754321 112334456788889988874 33343 4578
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEE
Q 004537 296 VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLL 375 (746)
Q Consensus 296 LSGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv 375 (746)
|||||||||+|||+|+.+|++|||||||+|||+.++..+++.|+++++ ++|||+++|++. ++.+.||++++|++|+++
T Consensus 151 LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~sH~~~-~~~~~~d~i~~l~~G~i~ 228 (254)
T PRK14273 151 LSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKE-SYTIIIVTHNMQ-QAGRISDRTAFFLNGCIE 228 (254)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999964 799999999976 467889999999999999
Q ss_pred EecCHHHHH
Q 004537 376 YFGKASEAM 384 (746)
Q Consensus 376 ~~G~~~~~~ 384 (746)
..|+++++.
T Consensus 229 ~~g~~~~~~ 237 (254)
T PRK14273 229 EESSTDELF 237 (254)
T ss_pred EeCCHHHHH
Confidence 999998874
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-42 Score=365.74 Aligned_cols=216 Identities=22% Similarity=0.433 Sum_probs=184.2
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCC-----
Q 004537 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS----- 224 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~----- 224 (746)
|+++||+++| +++.+|+|+|++|++||+++|+||||||||||+++|+|.+ ++.+|+|.++|+++.
T Consensus 2 l~~~~l~~~~--------~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~--~p~~G~i~~~g~~i~~~~~~ 71 (271)
T PRK13638 2 LATSDLWFRY--------QDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLL--RPQKGAVLWQGKPLDYSKRG 71 (271)
T ss_pred eEEEEEEEEc--------CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCC--CCCccEEEECCEEcccccCC
Confidence 7899999998 2457999999999999999999999999999999999954 356899999999873
Q ss_pred -hhccCcEEEEecCCcC-CCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHH
Q 004537 225 -KSLKSKIGFVTQDDVL-FPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (746)
Q Consensus 225 -~~~~~~i~yv~Q~~~l-~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerq 302 (746)
...++.++||+|++.+ +...|+.||+.+..... ....++..++++++++.+||.+..++. +..|||||||
T Consensus 72 ~~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~q 143 (271)
T PRK13638 72 LLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNL---GVPEAEITRRVDEALTLVDAQHFRHQP-----IQCLSHGQKK 143 (271)
T ss_pred HHHHHhheEEEeeChhhccccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHhHhcCC-----chhCCHHHHH
Confidence 1245679999999752 33468999998865332 123444456788899999998766654 4689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHH
Q 004537 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (746)
Q Consensus 303 Rv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~ 382 (746)
|++|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|++. .+.+.||++++|++|++++.|++++
T Consensus 144 rl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~ 222 (271)
T PRK13638 144 RVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDID-LIYEISDAVYVLRQGQILTHGAPGE 222 (271)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHH
Confidence 999999999999999999999999999999999999999877999999999975 4678899999999999999999887
Q ss_pred HH
Q 004537 383 AM 384 (746)
Q Consensus 383 ~~ 384 (746)
+.
T Consensus 223 ~~ 224 (271)
T PRK13638 223 VF 224 (271)
T ss_pred Hh
Confidence 64
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-42 Score=369.07 Aligned_cols=221 Identities=27% Similarity=0.437 Sum_probs=186.2
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (746)
.|+++||++.|..+ ....+.+|+|+|+++++||+++|+||||||||||+|+|+|.. ++.+|+|.++|+++..
T Consensus 2 ~i~~~~l~~~~~~~---~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~--~p~~G~i~~~g~~~~~~~~ 76 (287)
T PRK13641 2 SIKFENVDYIYSPG---TPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALL--KPSSGTITIAGYHITPETG 76 (287)
T ss_pred EEEEEEEEEEcCCC---CCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCC--CCCCcEEEECCEECccccc
Confidence 47899999998310 001257999999999999999999999999999999999954 3568999999998732
Q ss_pred -----hccCcEEEEecCC--cCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCC-ccccccccCccccCCC
Q 004537 226 -----SLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVS 297 (746)
Q Consensus 226 -----~~~~~i~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LS 297 (746)
..++.++|++|++ .++ .+||.||+.++.... ....++..++++++++.+||. +..++. ++.||
T Consensus 77 ~~~~~~~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~~LS 147 (287)
T PRK13641 77 NKNLKKLRKKVSLVFQFPEAQLF-ENTVLKDVEFGPKNF---GFSEDEAKEKALKWLKKVGLSEDLISKS-----PFELS 147 (287)
T ss_pred cchHHHHHhceEEEEeChhhhhc-cchHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhhCC-----cccCC
Confidence 2456799999997 455 479999999875432 234455566789999999996 455543 46899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEe
Q 004537 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (746)
Q Consensus 298 GGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~ 377 (746)
||||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+.+.||++++|++|++++.
T Consensus 148 gGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~-~~~~~~d~v~~l~~G~i~~~ 226 (287)
T PRK13641 148 GGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMD-DVAEYADDVLVLEHGKLIKH 226 (287)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEe
Confidence 99999999999999999999999999999999999999999999877999999999975 57789999999999999999
Q ss_pred cCHHHHH
Q 004537 378 GKASEAM 384 (746)
Q Consensus 378 G~~~~~~ 384 (746)
|+++++.
T Consensus 227 g~~~~~~ 233 (287)
T PRK13641 227 ASPKEIF 233 (287)
T ss_pred CCHHHHh
Confidence 9988764
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-43 Score=391.10 Aligned_cols=216 Identities=32% Similarity=0.534 Sum_probs=184.3
Q ss_pred CceEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCC--
Q 004537 147 PIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS-- 224 (746)
Q Consensus 147 ~~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~-- 224 (746)
+..++.+|++|.|+ +++++++|+|+++++|+.+||+|+||||||||+++|+|... +.+|+|.+||++..
T Consensus 318 ~~ei~~~~l~~~y~-------~g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~--~~~G~I~vng~~l~~l 388 (559)
T COG4988 318 PIEISLENLSFRYP-------DGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLA--PTQGEIRVNGIDLRDL 388 (559)
T ss_pred CceeeecceEEecC-------CCCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCC--CCCceEEECCcccccc
Confidence 44566779999983 23389999999999999999999999999999999999653 46899999999875
Q ss_pred --hhccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCC------CccccccccCccccCC
Q 004537 225 --KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL------ERCQDTMIGGSFVRGV 296 (746)
Q Consensus 225 --~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL------~~~~~~~vg~~~~~~L 296 (746)
..++++++||+|+|.+|+. |++|||.++.. +.+++ .+.+++++.|| ++..|+.+|+. .++|
T Consensus 389 ~~~~~~k~i~~v~Q~p~lf~g-TireNi~l~~~-----~~s~e----~i~~al~~a~l~~~v~~p~GLdt~ige~-G~~L 457 (559)
T COG4988 389 SPEAWRKQISWVSQNPYLFAG-TIRENILLARP-----DASDE----EIIAALDQAGLLEFVPKPDGLDTVIGEG-GAGL 457 (559)
T ss_pred CHHHHHhHeeeeCCCCccccc-cHHHHhhccCC-----cCCHH----HHHHHHHHhcHHHhhcCCCcccchhccC-CCCC
Confidence 3588999999999999985 99999998732 12333 34444444443 45778888854 5679
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEE
Q 004537 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (746)
Q Consensus 297 SGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~ 376 (746)
||||+|||++||||+.+++++++||||++||.++++.|++.|.++++ ++|+|++|||+.. ...+|+|++|++|++++
T Consensus 458 SgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~-~ktvl~itHrl~~--~~~~D~I~vld~G~l~~ 534 (559)
T COG4988 458 SGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAK-QKTVLVITHRLED--AADADRIVVLDNGRLVE 534 (559)
T ss_pred CHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHh-CCeEEEEEcChHH--HhcCCEEEEecCCceec
Confidence 99999999999999999999999999999999999999999999987 6999999999753 57799999999999999
Q ss_pred ecCHHHHHH
Q 004537 377 FGKASEAMA 385 (746)
Q Consensus 377 ~G~~~~~~~ 385 (746)
.|+|+++.+
T Consensus 535 ~g~~~~L~~ 543 (559)
T COG4988 535 QGTHEELSE 543 (559)
T ss_pred cCCHHHHhh
Confidence 999999864
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-42 Score=362.85 Aligned_cols=221 Identities=23% Similarity=0.405 Sum_probs=184.2
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCC---CCCccEEEECCEeCCh
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME---PTVGGSITYNDHPYSK 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~---~~~~G~I~~~G~~~~~ 225 (746)
.|+++|+++.| +++.+|+|+||+|++||+++|+||||||||||+++|+|.... ++.+|+|.++|+++..
T Consensus 12 ~l~~~~l~~~~--------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~ 83 (258)
T PRK14268 12 QIKVENLNLWY--------GEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYE 83 (258)
T ss_pred eEEEeeeEEEe--------CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEccc
Confidence 69999999988 245699999999999999999999999999999999996531 1368999999988632
Q ss_pred ------hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHH
Q 004537 226 ------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (746)
Q Consensus 226 ------~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGG 299 (746)
..++.++|++|++.+++ +||+||+.+..... ..+.+...++++++++.+++.+...... +..+..||||
T Consensus 84 ~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LSgG 158 (258)
T PRK14268 84 PDVDVVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIH---GANKKDLDGVVENALRSAALWDETSDRL-KSPALSLSGG 158 (258)
T ss_pred ccchHHHHhhhEEEEecCCccCc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcchhhhh-cCChhhCCHH
Confidence 24567999999999888 89999999875432 1233444566888999998843211111 2345689999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecC
Q 004537 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (746)
Q Consensus 300 erqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (746)
|||||+|||+|+.+|++|||||||+|||+.++..+.+.|+++++ |+|||++||++. ++.+.||++++|++|++++.|+
T Consensus 159 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~~~ 236 (258)
T PRK14268 159 QQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK-DYTIVIVTHNMQ-QAARISDYTGFFLMGELIEFGQ 236 (258)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh-CCEEEEEECCHH-HHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999965 899999999975 4678899999999999999999
Q ss_pred HHHHH
Q 004537 380 ASEAM 384 (746)
Q Consensus 380 ~~~~~ 384 (746)
++++.
T Consensus 237 ~~~~~ 241 (258)
T PRK14268 237 TRQIF 241 (258)
T ss_pred HHHHh
Confidence 98763
|
|
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-42 Score=361.87 Aligned_cols=224 Identities=23% Similarity=0.390 Sum_probs=185.3
Q ss_pred CceEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCC-CC--CCccEEEECCEeC
Q 004537 147 PIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLM-EP--TVGGSITYNDHPY 223 (746)
Q Consensus 147 ~~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~-~~--~~~G~I~~~G~~~ 223 (746)
|..|+++||+++| +++.+|+|+|++|++||+++|+||||||||||+|+|+|... .+ +.+|+|.++|+++
T Consensus 4 ~~~l~~~~l~~~~--------~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i 75 (253)
T PRK14242 4 PPKMEARGLSFFY--------GDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENI 75 (253)
T ss_pred CcEEEEeeeEEEE--------CCeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEc
Confidence 3469999999998 23569999999999999999999999999999999999542 12 3589999999987
Q ss_pred Ch------hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCC
Q 004537 224 SK------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVS 297 (746)
Q Consensus 224 ~~------~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS 297 (746)
.. ..++.++|++|++.+++ .||+||+.++...+. ....+..++++++.++.+++.+...... +..++.||
T Consensus 76 ~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS 151 (253)
T PRK14242 76 YDPHVDVVELRRRVGMVFQKPNPFP-KSIFENVAYGLRVNG--VKDKAYLAERVERSLRHAALWDEVKDRL-HESALGLS 151 (253)
T ss_pred cccccCHHHHhhcEEEEecCCCCCc-CcHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCchhhhHHh-hCCcccCC
Confidence 42 34578999999999888 599999998754321 1123344567888999999854322211 23457899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEe
Q 004537 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (746)
Q Consensus 298 GGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~ 377 (746)
|||||||+|||+|+.+|++|||||||+|||+.++..+.+.|+++.+ ++|||++||++. ++.+.||++++|++|++++.
T Consensus 152 gGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~tH~~~-~~~~~~d~v~~l~~G~i~~~ 229 (253)
T PRK14242 152 GGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKA-RYTIIIVTHNMQ-QAARVSDVTAFFYMGKLIEV 229 (253)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCeEEEEEecHH-HHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999964 799999999975 46788999999999999999
Q ss_pred cCHHHHH
Q 004537 378 GKASEAM 384 (746)
Q Consensus 378 G~~~~~~ 384 (746)
|+++++.
T Consensus 230 g~~~~~~ 236 (253)
T PRK14242 230 GPTEQIF 236 (253)
T ss_pred CCHHHHH
Confidence 9988763
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-42 Score=366.65 Aligned_cols=219 Identities=26% Similarity=0.450 Sum_probs=187.9
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (746)
.++++||+++|. ...+++|+|+|++|++||+++|+||||||||||+++|+|... +.+|+|.++|+++..
T Consensus 5 ~l~~~~l~~~~~------~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~--p~~G~i~~~g~~i~~~~~ 76 (279)
T PRK13635 5 IIRVEHISFRYP------DAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLL--PEAGTITVGGMVLSEETV 76 (279)
T ss_pred eEEEEEEEEEeC------CCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECCEECCcCcH
Confidence 589999999982 123569999999999999999999999999999999999653 468999999998752
Q ss_pred -hccCcEEEEecCCc-CCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHH
Q 004537 226 -SLKSKIGFVTQDDV-LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (746)
Q Consensus 226 -~~~~~i~yv~Q~~~-l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqR 303 (746)
..++.|+|++|++. +++..||.||+.++.... ..+.++..+++.++++.+||.+..++. +..||||||||
T Consensus 77 ~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~LS~G~~qr 148 (279)
T PRK13635 77 WDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENI---GVPREEMVERVDQALRQVGMEDFLNRE-----PHRLSGGQKQR 148 (279)
T ss_pred HHHhhheEEEEeCHHHhcccccHHHHHhhhHhhC---CCCHHHHHHHHHHHHHHcCChhhhhCC-----cccCCHHHHHH
Confidence 34678999999973 566689999999875432 234455567789999999998777654 46899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHH
Q 004537 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (746)
Q Consensus 304 v~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~ 382 (746)
|+|||+|+.+|++|||||||+|||+.++..+++.|++++++ |+|||++||++.. +. .||++++|++|++++.|++++
T Consensus 149 v~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~-~~-~~d~i~~l~~G~i~~~g~~~~ 226 (279)
T PRK13635 149 VAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDE-AA-QADRVIVMNKGEILEEGTPEE 226 (279)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHH-HH-cCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999999876 8999999999764 54 599999999999999999988
Q ss_pred HHH
Q 004537 383 AMA 385 (746)
Q Consensus 383 ~~~ 385 (746)
+.+
T Consensus 227 ~~~ 229 (279)
T PRK13635 227 IFK 229 (279)
T ss_pred Hhc
Confidence 753
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-42 Score=347.99 Aligned_cols=217 Identities=27% Similarity=0.463 Sum_probs=185.0
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (746)
.|+++||+..| +..++|++||+++++||+++|+||||+|||||||+|+|.. ++.+|+|.++|+|++.
T Consensus 3 mL~v~~l~~~Y--------G~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~--~~~~G~I~~~G~dit~~p~ 72 (237)
T COG0410 3 MLEVENLSAGY--------GKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLV--RPRSGRIIFDGEDITGLPP 72 (237)
T ss_pred ceeEEeEeecc--------cceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCC--CCCCeeEEECCeecCCCCH
Confidence 58999999988 5578999999999999999999999999999999999954 3458999999999863
Q ss_pred --hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcC-CCccccccccCccccCCCHHHHH
Q 004537 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG-LERCQDTMIGGSFVRGVSGGERK 302 (746)
Q Consensus 226 --~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-L~~~~~~~vg~~~~~~LSGGerq 302 (746)
..|..|+||||...+||.|||+|||..++..+.. ++..+...+++.+.|- |.+.++++- ..|||||||
T Consensus 73 ~~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~----~~~~~~~~e~v~~lFP~Lker~~~~a-----G~LSGGEQQ 143 (237)
T COG0410 73 HERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRD----KEAQERDLEEVYELFPRLKERRNQRA-----GTLSGGEQQ 143 (237)
T ss_pred HHHHhCCeEeCcccccchhhCcHHHHHhhhhhcccc----cccccccHHHHHHHChhHHHHhcCcc-----cCCChHHHH
Confidence 3467899999999999999999999998654321 1112222666777763 455555543 479999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHH
Q 004537 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 381 (746)
Q Consensus 303 Rv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 381 (746)
.++|||||+.+|++|+|||||.||-|.-..+|.+.|++++++ |.||+++-++.. ...+.+||.++|.+|++++.|+.+
T Consensus 144 MLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~-~Al~iaDr~yvle~Griv~~G~~~ 222 (237)
T COG0410 144 MLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNAR-FALEIADRGYVLENGRIVLSGTAA 222 (237)
T ss_pred HHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHH-HHHHhhCEEEEEeCCEEEEecCHH
Confidence 999999999999999999999999999999999999999976 779999988855 577899999999999999999999
Q ss_pred HHHH
Q 004537 382 EAMA 385 (746)
Q Consensus 382 ~~~~ 385 (746)
++.+
T Consensus 223 eL~~ 226 (237)
T COG0410 223 ELLA 226 (237)
T ss_pred HHhc
Confidence 9763
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-42 Score=373.36 Aligned_cols=227 Identities=25% Similarity=0.436 Sum_probs=191.2
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCC--CccEEEECCEeCCh-
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPT--VGGSITYNDHPYSK- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~--~~G~I~~~G~~~~~- 225 (746)
.|+++||++.|..+ .+...+|+||||+|++||+++|+|+||||||||+++|+|... +. .+|+|.++|+++..
T Consensus 12 ~L~i~~l~~~~~~~----~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~-p~~~~sG~I~~~G~~i~~~ 86 (330)
T PRK09473 12 LLDVKDLRVTFSTP----DGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLA-ANGRIGGSATFNGREILNL 86 (330)
T ss_pred eEEEeCeEEEEecC----CCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCC-CCCCCCeEEEECCEECCcC
Confidence 69999999998421 133579999999999999999999999999999999999653 32 38999999998742
Q ss_pred ---h---cc-CcEEEEecCC--cCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCC
Q 004537 226 ---S---LK-SKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGV 296 (746)
Q Consensus 226 ---~---~~-~~i~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~L 296 (746)
. +| +.|+||+|++ .++|.+|+.+++........ ..++.+..+++.++++.+||++..+. + +.++++|
T Consensus 87 ~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~--~~~~~~~~~~~~~~L~~vgL~~~~~~-~-~~~p~~L 162 (330)
T PRK09473 87 PEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHK--GMSKAEAFEESVRMLDAVKMPEARKR-M-KMYPHEF 162 (330)
T ss_pred CHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCCChHHH-h-cCCcccC
Confidence 1 22 4799999998 68899999999987654321 23455666788999999999764322 2 3567899
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEE
Q 004537 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLL 375 (746)
Q Consensus 297 SGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv 375 (746)
||||||||+|||||+.+|++||+||||+|||+.++.++++.|+++.++ |.|+|++|||+. .+.++||+|++|++|+++
T Consensus 163 SgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~~Dri~vm~~G~iv 241 (330)
T PRK09473 163 SGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLG-VVAGICDKVLVMYAGRTM 241 (330)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHH-HHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999765 899999999976 466789999999999999
Q ss_pred EecCHHHHHH
Q 004537 376 YFGKASEAMA 385 (746)
Q Consensus 376 ~~G~~~~~~~ 385 (746)
+.|+++++..
T Consensus 242 e~g~~~~i~~ 251 (330)
T PRK09473 242 EYGNARDVFY 251 (330)
T ss_pred EECCHHHHHh
Confidence 9999998753
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-42 Score=367.67 Aligned_cols=215 Identities=25% Similarity=0.427 Sum_probs=184.2
Q ss_pred EEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh----h
Q 004537 151 KFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----S 226 (746)
Q Consensus 151 ~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~----~ 226 (746)
.++|++++| +++.+|+|+|+++++||+++|+||||||||||+++|+|.. ++.+|+|.++|.++.. .
T Consensus 26 ~~~~~~~~~--------~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~--~p~~G~i~i~g~~~~~~~~~~ 95 (269)
T cd03294 26 SKEEILKKT--------GQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLI--EPTSGKVLIDGQDIAAMSRKE 95 (269)
T ss_pred hhhhhhhhc--------CCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC--CCCCeEEEECCEEccccChhh
Confidence 456777766 4567999999999999999999999999999999999954 3468999999998742 1
Q ss_pred ----ccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHH
Q 004537 227 ----LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (746)
Q Consensus 227 ----~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerq 302 (746)
.+++++|++|++.+++.+||+||+.+..... ........+++.++++.+||.+..++. ++.|||||||
T Consensus 96 ~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~Gq~q 167 (269)
T cd03294 96 LRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQ---GVPRAEREERAAEALELVGLEGWEHKY-----PDELSGGMQQ 167 (269)
T ss_pred hhhhhcCcEEEEecCcccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCC-----cccCCHHHHH
Confidence 1357999999999998899999999875432 123344556788999999998776654 4689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHH
Q 004537 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 381 (746)
Q Consensus 303 Rv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 381 (746)
||+|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+.||++++|++|++++.|+++
T Consensus 168 rv~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~-~~~~~~d~v~~l~~G~i~~~g~~~ 246 (269)
T cd03294 168 RVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLD-EALRLGDRIAIMKDGRLVQVGTPE 246 (269)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999754 899999999975 477889999999999999999988
Q ss_pred HHH
Q 004537 382 EAM 384 (746)
Q Consensus 382 ~~~ 384 (746)
++.
T Consensus 247 ~~~ 249 (269)
T cd03294 247 EIL 249 (269)
T ss_pred HHH
Confidence 764
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-42 Score=360.54 Aligned_cols=224 Identities=24% Similarity=0.389 Sum_probs=185.5
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCC---CCccEEEECCEeCC-
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP---TVGGSITYNDHPYS- 224 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~---~~~G~I~~~G~~~~- 224 (746)
.|+++||+++| +++++|+|+|+++++||+++|+||||||||||+++|+|..... +.+|+|.++|+++.
T Consensus 4 ~l~~~~l~~~~--------~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~ 75 (253)
T PRK14267 4 AIETVNLRVYY--------GSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYS 75 (253)
T ss_pred eEEEEeEEEEe--------CCeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccc
Confidence 58999999998 2356999999999999999999999999999999999965321 24899999999874
Q ss_pred -----hhccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHH
Q 004537 225 -----KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (746)
Q Consensus 225 -----~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGG 299 (746)
..+++.++|++|++.+++.+||.||+.++...+.. ....+...++++++++.+++.+..... -+..+..||||
T Consensus 76 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~~~~LS~G 153 (253)
T PRK14267 76 PDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGL-VKSKKELDERVEWALKKAALWDEVKDR-LNDYPSNLSGG 153 (253)
T ss_pred cccChHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCc-cCCHHHHHHHHHHHHHHcCCccchhhh-hccChhhCCHH
Confidence 13457899999999999989999999987542210 012334455678899999885321111 12345789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecC
Q 004537 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (746)
Q Consensus 300 erqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (746)
||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++. ++.+.||++++|++|++++.|+
T Consensus 154 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~ 231 (253)
T PRK14267 154 QRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK-EYTIVLVTHSPA-QAARVSDYVAFLYLGKLIEVGP 231 (253)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh-CCEEEEEECCHH-HHHhhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999975 799999999975 4678899999999999999999
Q ss_pred HHHHH
Q 004537 380 ASEAM 384 (746)
Q Consensus 380 ~~~~~ 384 (746)
++++.
T Consensus 232 ~~~~~ 236 (253)
T PRK14267 232 TRKVF 236 (253)
T ss_pred HHHHH
Confidence 88864
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-42 Score=372.85 Aligned_cols=227 Identities=26% Similarity=0.380 Sum_probs=188.6
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCC--CCccEEEECCEeCCh-
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP--TVGGSITYNDHPYSK- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~--~~~G~I~~~G~~~~~- 225 (746)
.|+++||++.|..+ .+...+|+||||+|++||+++|+|+||||||||+++|+|.+..+ +.+|+|.++|+++..
T Consensus 3 ~L~v~~l~~~~~~~----~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~ 78 (326)
T PRK11022 3 LLNVDKLSVHFGDE----SAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRI 78 (326)
T ss_pred eEEEeCeEEEECCC----CccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcC
Confidence 48999999998321 12246999999999999999999999999999999999965321 358999999998742
Q ss_pred ---hc----cCcEEEEecCC--cCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCC
Q 004537 226 ---SL----KSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGV 296 (746)
Q Consensus 226 ---~~----~~~i~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~L 296 (746)
.+ ++.|+||+|++ .+.|.+||.+++........ ...+++.++++.++++.+||.+..+ ..+.++++|
T Consensus 79 ~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~--~~~~~~~~~~~~~~L~~~gL~~~~~--~l~~~p~~L 154 (326)
T PRK11022 79 SEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQ--GGNKKTRRQRAIDLLNQVGIPDPAS--RLDVYPHQL 154 (326)
T ss_pred CHHHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChHH--HHhCCchhC
Confidence 11 24699999998 47889999998876543221 2345566778999999999975221 113457899
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCChHHHhccCEEEEEeCCeEE
Q 004537 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLL 375 (746)
Q Consensus 297 SGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~-~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv 375 (746)
||||||||+|||||+.+|++||+||||+|||+.++.++++.|+++.+ .|.|+|++|||+. .+.+.||+|++|++|+++
T Consensus 155 SgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~-~~~~~adri~vm~~G~iv 233 (326)
T PRK11022 155 SGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLA-LVAEAAHKIIVMYAGQVV 233 (326)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999999976 4899999999976 466889999999999999
Q ss_pred EecCHHHHH
Q 004537 376 YFGKASEAM 384 (746)
Q Consensus 376 ~~G~~~~~~ 384 (746)
+.|+++++.
T Consensus 234 e~g~~~~~~ 242 (326)
T PRK11022 234 ETGKAHDIF 242 (326)
T ss_pred EECCHHHHh
Confidence 999998875
|
|
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-42 Score=361.81 Aligned_cols=212 Identities=31% Similarity=0.492 Sum_probs=182.7
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCChhccC
Q 004537 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKS 229 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~ 229 (746)
|+++|++++| +++.+|+|+|++|++||+++|+||||||||||+++|+|.. ++.+|+|.++|+++.. ...
T Consensus 2 l~~~~l~~~~--------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~--~p~~G~i~~~g~~~~~-~~~ 70 (255)
T PRK11248 2 LQISHLYADY--------GGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFV--PYQHGSITLDGKPVEG-PGA 70 (255)
T ss_pred EEEEEEEEEe--------CCeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCC--CCCCcEEEECCEECCC-CCC
Confidence 7899999998 2357999999999999999999999999999999999954 3568999999998753 345
Q ss_pred cEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHHHH
Q 004537 230 KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNE 309 (746)
Q Consensus 230 ~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~a 309 (746)
.++|++|++.+++.+||+||+.+....+ .....+..+++.++++.+||.+..++. +..|||||||||+|||+
T Consensus 71 ~~~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgGq~qrl~lara 142 (255)
T PRK11248 71 ERGVVFQNEGLLPWRNVQDNVAFGLQLA---GVEKMQRLEIAHQMLKKVGLEGAEKRY-----IWQLSGGQRQRVGIARA 142 (255)
T ss_pred cEEEEeCCCccCCCCcHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCChhHhhCC-----hhhCCHHHHHHHHHHHH
Confidence 6899999999999899999998865422 123444556788999999998766643 46899999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCChHHHhccCEEEEEe--CCeEEEecCHH
Q 004537 310 IIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLG--KGSLLYFGKAS 381 (746)
Q Consensus 310 L~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~-~g~Tvi~~~H~~~~~i~~~~D~i~vL~--~G~iv~~G~~~ 381 (746)
|+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++||++. .+.+.||++++|+ +|+++..++.+
T Consensus 143 l~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~~ 216 (255)
T PRK11248 143 LAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIE-EAVFMATELVLLSPGPGRVVERLPLN 216 (255)
T ss_pred HhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCCcEEEEEecCC
Confidence 9999999999999999999999999999999854 5899999999975 5778899999998 59999988754
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-42 Score=353.19 Aligned_cols=202 Identities=29% Similarity=0.508 Sum_probs=171.9
Q ss_pred EEEeEEEEEeecccccccc-ccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh-hcc
Q 004537 151 KFTDVTYKVILKGMTSSEE-KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-SLK 228 (746)
Q Consensus 151 ~~~nvs~~~~~~~~~~~~~-~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~-~~~ 228 (746)
+++||+++| ++ +++|+|+||++++||+++|+|||||||||||++|+|.. ++.+|+|.++|.++.. ..+
T Consensus 1 ~~~~l~~~~--------~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~--~p~~G~i~~~g~~~~~~~~~ 70 (205)
T cd03226 1 RIENISFSY--------KKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLI--KESSGSILLNGKPIKAKERR 70 (205)
T ss_pred CcccEEEEe--------CCcCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCC--CCCceEEEECCEEhhhHHhh
Confidence 367899988 22 57999999999999999999999999999999999954 3568999999998753 345
Q ss_pred CcEEEEecCCc-CCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHH
Q 004537 229 SKIGFVTQDDV-LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (746)
Q Consensus 229 ~~i~yv~Q~~~-l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA 307 (746)
+.++|++|++. .+..+||+||+.+..... . ...+++.++++.+||.+..++. ++.||||||||++||
T Consensus 71 ~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~-----~--~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~la 138 (205)
T cd03226 71 KSIGYVMQDVDYQLFTDSVREELLLGLKEL-----D--AGNEQAETVLKDLDLYALKERH-----PLSLSGGQKQRLAIA 138 (205)
T ss_pred cceEEEecChhhhhhhccHHHHHhhhhhhc-----C--ccHHHHHHHHHHcCCchhcCCC-----chhCCHHHHHHHHHH
Confidence 67999999974 233579999998864321 1 1125678899999998776654 468999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEE
Q 004537 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLL 375 (746)
Q Consensus 308 ~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv 375 (746)
|+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. ++.+.||++++|++|+++
T Consensus 139 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 139 AALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYE-FLAKVCDRVLLLANGAIV 205 (205)
T ss_pred HHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEC
Confidence 9999999999999999999999999999999999777999999999975 466789999999999975
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-42 Score=353.13 Aligned_cols=207 Identities=32% Similarity=0.553 Sum_probs=177.7
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh----
Q 004537 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (746)
++++||+++| +++.+|+|+||++++||+++|+||||||||||+++|+|.. ++.+|+|.++|+++..
T Consensus 1 l~~~~l~~~~--------~~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~--~~~~G~i~~~g~~~~~~~~~ 70 (213)
T cd03262 1 IEIKNLHKSF--------GDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLE--EPDSGTIIIDGLKLTDDKKN 70 (213)
T ss_pred CEEEEEEEEE--------CCeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCC--CCCCceEEECCEECCccchh
Confidence 4689999998 2357999999999999999999999999999999999954 3568999999998731
Q ss_pred --hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHH
Q 004537 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (746)
Q Consensus 226 --~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqR 303 (746)
..++.++|++|++.+++.+|++||+.++..... ....++..++++++++.+|+++..++. ++.||||||||
T Consensus 71 ~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qr 143 (213)
T cd03262 71 INELRQKVGMVFQQFNLFPHLTVLENITLAPIKVK--GMSKAEAEERALELLEKVGLADKADAY-----PAQLSGGQQQR 143 (213)
T ss_pred HHHHHhcceEEecccccCCCCcHHHHHHhHHHHhc--CCCHHHHHHHHHHHHHHcCCHhHhhhC-----ccccCHHHHHH
Confidence 346789999999999998999999998643111 123444556788999999998766654 46899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeE
Q 004537 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (746)
Q Consensus 304 v~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~i 374 (746)
++|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. ++.+.||++++|++|++
T Consensus 144 v~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~-~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 144 VAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMG-FAREVADRVIFMDDGRI 213 (213)
T ss_pred HHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999999999999877899999999975 56788999999999974
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-42 Score=355.52 Aligned_cols=215 Identities=28% Similarity=0.450 Sum_probs=175.7
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh----
Q 004537 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (746)
|+++||+++|..+ ..+.++|+|+|+++++||+++|+||||||||||+++|+|.. ++.+|+|.++|+++..
T Consensus 2 l~~~~v~~~~~~~----~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~--~~~~G~i~~~g~~~~~~~~~ 75 (228)
T cd03257 2 LEVKNLSVSFPTG----GGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLL--KPTSGSIIFDGKDLLKLSRR 75 (228)
T ss_pred eEEEeeeEeccCC----CcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCC--CCCCceEEECCEEccccchh
Confidence 7899999998210 01136999999999999999999999999999999999954 3568999999998742
Q ss_pred ---hccCcEEEEecCC--cCCCCCCHHHHHHHHHhccCCCCCcHHHHHHH-HHHHHHHcCCC-ccccccccCccccCCCH
Q 004537 226 ---SLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKR-AIDVINELGLE-RCQDTMIGGSFVRGVSG 298 (746)
Q Consensus 226 ---~~~~~i~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~-v~~~l~~lgL~-~~~~~~vg~~~~~~LSG 298 (746)
..++.++|++|++ .+++.+||+||+.+......+. ......+. ++++++.+++. +..+. .+..|||
T Consensus 76 ~~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~~LS~ 148 (228)
T cd03257 76 LRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKL--SKKEARKEAVLLLLVGVGLPEEVLNR-----YPHELSG 148 (228)
T ss_pred hHHHhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccCC--cHHHHHHHHHHHHHHHCCCChhHhhC-----CchhcCH
Confidence 3457899999998 4677899999998865432211 11222222 35888999985 44454 3468999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEe
Q 004537 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (746)
Q Consensus 299 GerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~ 377 (746)
||||||+|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. .+.+.||++++|++|+++..
T Consensus 149 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~ 227 (228)
T cd03257 149 GQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLG-VVAKIADRVAVMYAGKIVEE 227 (228)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEeCCEEEec
Confidence 9999999999999999999999999999999999999999999875 899999999975 46678999999999999876
Q ss_pred c
Q 004537 378 G 378 (746)
Q Consensus 378 G 378 (746)
|
T Consensus 228 g 228 (228)
T cd03257 228 G 228 (228)
T ss_pred C
Confidence 5
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-42 Score=357.90 Aligned_cols=219 Identities=26% Similarity=0.416 Sum_probs=185.7
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (746)
.|+++|++++| +++++|+|+||++++||+++|+||||||||||+++|+|.. ++.+|+|.++|.++..
T Consensus 2 ~i~~~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~--~p~~G~i~~~g~~~~~~~~ 71 (242)
T TIGR03411 2 ILYLEGLSVSF--------DGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKT--RPDEGSVLFGGTDLTGLPE 71 (242)
T ss_pred eEEEEeeEEEc--------CCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC--CCCCCeEEECCeecCCCCH
Confidence 47899999998 2357999999999999999999999999999999999964 3468999999998742
Q ss_pred --hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCC--C---CCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCH
Q 004537 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLP--N---TLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSG 298 (746)
Q Consensus 226 --~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~--~---~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSG 298 (746)
..++.++|++|++.+++.+||+||+.+....... . ....+..+++++++++.+|+++..++. ++.|||
T Consensus 72 ~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~ 146 (242)
T TIGR03411 72 HQIARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRL-----AGLLSH 146 (242)
T ss_pred HHHHhcCeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCC-----hhhCCH
Confidence 1245699999999999999999999986432100 0 012234456788999999998766654 468999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEec
Q 004537 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (746)
Q Consensus 299 GerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G 378 (746)
||||||+|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||++||++. ++.+.||++++|++|++++.|
T Consensus 147 Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~g~~~~~~ 224 (242)
T TIGR03411 147 GQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG-KHSVVVVEHDME-FVRSIADKVTVLHQGSVLAEG 224 (242)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEECCHH-HHHHhCCEEEEEECCeEEeeC
Confidence 999999999999999999999999999999999999999999976 799999999975 577889999999999999999
Q ss_pred CHHHHH
Q 004537 379 KASEAM 384 (746)
Q Consensus 379 ~~~~~~ 384 (746)
+++++.
T Consensus 225 ~~~~~~ 230 (242)
T TIGR03411 225 SLDQVQ 230 (242)
T ss_pred CHHHHh
Confidence 988763
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-42 Score=361.15 Aligned_cols=220 Identities=23% Similarity=0.373 Sum_probs=185.7
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (746)
.++++|+++.| +++++|+|+|+++++||+++|+||||||||||+++|+|.. ++.+|+|.++|.++..
T Consensus 5 ~l~~~~l~~~~--------~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~--~~~~G~i~~~g~~~~~~~~ 74 (255)
T PRK11300 5 LLSVSGLMMRF--------GGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFY--KPTGGTILLRGQHIEGLPG 74 (255)
T ss_pred eEEEeeEEEEE--------CCEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCc--CCCcceEEECCEECCCCCH
Confidence 59999999998 3457999999999999999999999999999999999954 3568999999998742
Q ss_pred -h-ccCcEEEEecCCcCCCCCCHHHHHHHHHhccCC----------CCC--cHHHHHHHHHHHHHHcCCCccccccccCc
Q 004537 226 -S-LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLP----------NTL--TKQQKEKRAIDVINELGLERCQDTMIGGS 291 (746)
Q Consensus 226 -~-~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~----------~~~--~~~~~~~~v~~~l~~lgL~~~~~~~vg~~ 291 (746)
. .+..++|++|++.+++.+||+||+.++...... ... ...+..+++.++++.+||.+..++.
T Consensus 75 ~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~---- 150 (255)
T PRK11300 75 HQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQ---- 150 (255)
T ss_pred HHHHhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCC----
Confidence 1 234689999999999999999999986431110 000 1122345678889999998766654
Q ss_pred cccCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEe
Q 004537 292 FVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLG 370 (746)
Q Consensus 292 ~~~~LSGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~ 370 (746)
++.||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+.||++++|+
T Consensus 151 -~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~ 228 (255)
T PRK11300 151 -AGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMK-LVMGISDRIYVVN 228 (255)
T ss_pred -hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH-HHHHhCCEEEEEE
Confidence 4689999999999999999999999999999999999999999999999875 899999999975 5778899999999
Q ss_pred CCeEEEecCHHHHH
Q 004537 371 KGSLLYFGKASEAM 384 (746)
Q Consensus 371 ~G~iv~~G~~~~~~ 384 (746)
+|++++.|+++++.
T Consensus 229 ~g~i~~~~~~~~~~ 242 (255)
T PRK11300 229 QGTPLANGTPEEIR 242 (255)
T ss_pred CCeEEecCCHHHHh
Confidence 99999999988763
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-42 Score=359.28 Aligned_cols=222 Identities=22% Similarity=0.403 Sum_probs=184.6
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCC--CCC-CCccEEEECCEeCCh
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRL--MEP-TVGGSITYNDHPYSK 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~--~~~-~~~G~I~~~G~~~~~ 225 (746)
.|+++|+++.| +++.+|+|+||++++||+++|+||||||||||+++|+|.. ..+ +.+|+|.++|+++..
T Consensus 3 ~l~~~~~~~~~--------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~ 74 (250)
T PRK14245 3 KIDARDVNFWY--------GDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYD 74 (250)
T ss_pred EEEEEEEEEEE--------CCEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEeccc
Confidence 68999999998 3457999999999999999999999999999999999852 222 148999999998742
Q ss_pred ------hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHH
Q 004537 226 ------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (746)
Q Consensus 226 ------~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGG 299 (746)
..++.++|++|++.+++ .|++||+.++...+. ....+...+.++++++.+||.+..+... +..++.||||
T Consensus 75 ~~~~~~~~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G 150 (250)
T PRK14245 75 KGVQVDELRKNVGMVFQRPNPFP-KSIFENVAYGLRVNG--VKDNAFIRQRVEETLKGAALWDEVKDKL-KESAFALSGG 150 (250)
T ss_pred ccccHHHHhhheEEEecCCccCc-ccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCCcchhhhh-hCCcccCCHH
Confidence 34567999999998887 699999998754321 1122334566888999999865322211 2345789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecC
Q 004537 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (746)
Q Consensus 300 erqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (746)
||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++. +++|||+++|++. ++.+.||++++|++|++++.|+
T Consensus 151 ~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiivtH~~~-~~~~~~d~v~~l~~G~~~~~~~ 228 (250)
T PRK14245 151 QQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELK-KDYTIVIVTHNMQ-QAARVSDKTAFFYMGEMVEYDD 228 (250)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHhhCCEEEEEECCEEEEECC
Confidence 9999999999999999999999999999999999999999995 4899999999976 4678899999999999999999
Q ss_pred HHHHH
Q 004537 380 ASEAM 384 (746)
Q Consensus 380 ~~~~~ 384 (746)
++++.
T Consensus 229 ~~~~~ 233 (250)
T PRK14245 229 TKKIF 233 (250)
T ss_pred HHHHh
Confidence 98874
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-42 Score=362.28 Aligned_cols=217 Identities=27% Similarity=0.475 Sum_probs=185.5
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (746)
.|+++||+++| +++.+|+|+||++++|++++|+||||||||||+++|+|.. ++.+|+|.++|.++..
T Consensus 2 ~l~~~~l~~~~--------~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~--~p~~G~i~~~g~~~~~~~~ 71 (258)
T PRK13548 2 MLEARNLSVRL--------GGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGEL--SPDSGEVRLNGRPLADWSP 71 (258)
T ss_pred eEEEEeEEEEe--------CCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC--CCCCCEEEECCEEcccCCH
Confidence 48899999998 3457999999999999999999999999999999999964 3568999999998642
Q ss_pred -hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHH
Q 004537 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (746)
Q Consensus 226 -~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv 304 (746)
..++.++|++|++.+++.+||+||+.+..... ....+..+++++++++.+||.+..++. +..|||||||||
T Consensus 72 ~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgGe~qrv 143 (258)
T PRK13548 72 AELARRRAVLPQHSSLSFPFTVEEVVAMGRAPH---GLSRAEDDALVAAALAQVDLAHLAGRD-----YPQLSGGEQQRV 143 (258)
T ss_pred HHhhhheEEEccCCcCCCCCCHHHHHHhhhccc---CCCcHHHHHHHHHHHHHcCCHhHhcCC-----cccCCHHHHHHH
Confidence 34567999999998877899999999864321 112233445678899999998766654 468999999999
Q ss_pred HHHHHHh------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-HCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEe
Q 004537 305 CIGNEII------INPSLLFLDEPTSGLDSTTALRIVQMLQDIA-EAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (746)
Q Consensus 305 ~IA~aL~------~~p~illLDEPTsgLD~~~~~~i~~~L~~l~-~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~ 377 (746)
+|||+|+ .+|++|+|||||+|||+.++..+.+.|++++ ++|+|||++||++. .+.+.||++++|++|++++.
T Consensus 144 ~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~ 222 (258)
T PRK13548 144 QLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLN-LAARYADRIVLLHQGRLVAD 222 (258)
T ss_pred HHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhcCEEEEEECCEEEee
Confidence 9999999 5999999999999999999999999999997 56899999999975 46778999999999999999
Q ss_pred cCHHHHH
Q 004537 378 GKASEAM 384 (746)
Q Consensus 378 G~~~~~~ 384 (746)
|+++++.
T Consensus 223 ~~~~~~~ 229 (258)
T PRK13548 223 GTPAEVL 229 (258)
T ss_pred CCHHHHh
Confidence 9988764
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-42 Score=354.01 Aligned_cols=210 Identities=30% Similarity=0.535 Sum_probs=176.4
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh----
Q 004537 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (746)
|+++||+++|..+ .+.+++|+|+|+++++||+++|+||||||||||+++|+|.. ++.+|+|.++|+++..
T Consensus 2 l~~~~v~~~~~~~----~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~--~~~~G~i~~~g~~~~~~~~~ 75 (221)
T TIGR02211 2 LKCENLGKRYQEG----KLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLD--NPTSGEVLFNGQSLSKLSSN 75 (221)
T ss_pred EEEEeeeEEccCC----CcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC--CCCCcEEEECCEEhhhcCHh
Confidence 6899999998311 11256999999999999999999999999999999999964 3468999999998742
Q ss_pred h---cc-CcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHH
Q 004537 226 S---LK-SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301 (746)
Q Consensus 226 ~---~~-~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGer 301 (746)
. ++ +.++||+|++.+++.+||+||+.+....+ .....+..+++.++++.+||++..++. ++.||||||
T Consensus 76 ~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~ 147 (221)
T TIGR02211 76 ERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIG---KKSVKEAKERAYEMLEKVGLEHRINHR-----PSELSGGER 147 (221)
T ss_pred HHHHHHHhcEEEEecccccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCC-----hhhCCHHHH
Confidence 1 22 57999999999998899999999865432 123334456788999999998766654 468999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEE
Q 004537 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLL 375 (746)
Q Consensus 302 qRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv 375 (746)
|||+|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. .+ +.+|++++|++|+++
T Consensus 148 qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~-~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 148 QRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLE-LA-KKLDRVLEMKDGQLF 220 (221)
T ss_pred HHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-hhcCEEEEEeCCEec
Confidence 9999999999999999999999999999999999999999764 899999999976 34 558999999999975
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-42 Score=353.89 Aligned_cols=208 Identities=27% Similarity=0.481 Sum_probs=179.0
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh----
Q 004537 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (746)
|+++|++++|. +++.+|+|+|+++++||+++|+||||||||||+++|+|.. ++.+|+|.++|.++..
T Consensus 2 l~~~~l~~~~~-------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~--~~~~G~i~~~g~~i~~~~~~ 72 (222)
T PRK10908 2 IRFEHVSKAYL-------GGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIE--RPSAGKIWFSGHDITRLKNR 72 (222)
T ss_pred EEEEeeEEEec-------CCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC--CCCceEEEECCEEcccCChh
Confidence 78999999882 2357999999999999999999999999999999999954 3568999999998742
Q ss_pred ---hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHH
Q 004537 226 ---SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (746)
Q Consensus 226 ---~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerq 302 (746)
.+++.++|++|++.+++.+||+||+.+..... ..+.++..++++++++.+++.+..++. +..|||||||
T Consensus 73 ~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~q 144 (222)
T PRK10908 73 EVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIA---GASGDDIRRRVSAALDKVGLLDKAKNF-----PIQLSGGEQQ 144 (222)
T ss_pred HHHHHHhheEEEecCccccccccHHHHHHhHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCC-----chhCCHHHHH
Confidence 14578999999999888899999999875432 133444456678899999998766643 4689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEE
Q 004537 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLL 375 (746)
Q Consensus 303 Rv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv 375 (746)
|++|||+|+.+|++|||||||+|||+.++..+.+.|++++++|.|+|++||++. ++...||++++|++|+++
T Consensus 145 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~ 216 (222)
T PRK10908 145 RVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIG-LISRRSYRMLTLSDGHLH 216 (222)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEc
Confidence 999999999999999999999999999999999999999877899999999975 466789999999999975
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-43 Score=386.68 Aligned_cols=215 Identities=32% Similarity=0.566 Sum_probs=185.6
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (746)
.++++||+|+|+ ..+.++|+|+|+++++||.+||+|+||||||||+++|+|. ++ +.+|+|.+||.++..
T Consensus 336 ~l~~~~vsF~y~------~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~-~~-~~~G~i~~~g~~~~~l~~ 407 (573)
T COG4987 336 ALELRNVSFTYP------GQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGA-WD-PQQGSITLNGVEIASLDE 407 (573)
T ss_pred eeeeccceeecC------CCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhc-cC-CCCCeeeECCcChhhCCh
Confidence 699999999994 3455899999999999999999999999999999999984 34 458999999998742
Q ss_pred -hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCC-------ccccccccCccccCCC
Q 004537 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-------RCQDTMIGGSFVRGVS 297 (746)
Q Consensus 226 -~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~vg~~~~~~LS 297 (746)
.+++.|++++|...+|.+ |+++||.++. |+ .++ +.+.++++++||+ +..||.+|+. .+.||
T Consensus 408 ~~~~e~i~vl~Qr~hlF~~-Tlr~NL~lA~----~~-AsD----Eel~~aL~qvgL~~l~~~~p~gl~t~lge~-G~~LS 476 (573)
T COG4987 408 QALRETISVLTQRVHLFSG-TLRDNLRLAN----PD-ASD----EELWAALQQVGLEKLLESAPDGLNTWLGEG-GRRLS 476 (573)
T ss_pred hhHHHHHhhhccchHHHHH-HHHHHHhhcC----CC-CCH----HHHHHHHHHcCHHHHHHhChhhhhchhccC-CCcCC
Confidence 367889999999999975 9999999873 22 233 3355566666654 4567778754 46799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEe
Q 004537 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (746)
Q Consensus 298 GGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~ 377 (746)
||||||++|||+|++|.++++|||||.|||+.++.++++.|.+-++ |||+|++||+... .+.||+|++|++|++++.
T Consensus 477 GGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~-~kTll~vTHrL~~--le~~drIivl~~Gkiie~ 553 (573)
T COG4987 477 GGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAE-GKTLLMVTHRLRG--LERMDRIIVLDNGKIIEE 553 (573)
T ss_pred chHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhc-CCeEEEEeccccc--HhhcCEEEEEECCeeeec
Confidence 9999999999999999999999999999999999999999999775 9999999999875 578999999999999999
Q ss_pred cCHHHHHH
Q 004537 378 GKASEAMA 385 (746)
Q Consensus 378 G~~~~~~~ 385 (746)
|++.+++.
T Consensus 554 G~~~~Ll~ 561 (573)
T COG4987 554 GTHAELLA 561 (573)
T ss_pred CCHHhhhc
Confidence 99999875
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-42 Score=364.49 Aligned_cols=216 Identities=26% Similarity=0.456 Sum_probs=185.3
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh----
Q 004537 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (746)
++++||+++|. +++.+|+|+||+|++||+++|+||||||||||+++|+|.. ++.+|+|.++|.++..
T Consensus 2 l~~~~l~~~~~-------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~--~p~~G~i~~~g~~~~~~~~~ 72 (274)
T PRK13644 2 IRLENVSYSYP-------DGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLL--RPQKGKVLVSGIDTGDFSKL 72 (274)
T ss_pred EEEEEEEEEcC-------CCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCC--CCCCceEEECCEECCccccH
Confidence 78999999982 2356999999999999999999999999999999999954 3468999999998742
Q ss_pred -hccCcEEEEecCCc-CCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHH
Q 004537 226 -SLKSKIGFVTQDDV-LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (746)
Q Consensus 226 -~~~~~i~yv~Q~~~-l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqR 303 (746)
..++.++|++|++. .+...||.||+.+..... ..+..+..++++++++.+||.+..++. ++.||||||||
T Consensus 73 ~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~G~~qr 144 (274)
T PRK13644 73 QGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENL---CLPPIEIRKRVDRALAEIGLEKYRHRS-----PKTLSGGQGQC 144 (274)
T ss_pred HHHHhheEEEEEChhhhcccchHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCC-----cccCCHHHHHH
Confidence 34678999999975 355689999999875422 234455566788999999998776654 46899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHH
Q 004537 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (746)
Q Consensus 304 v~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 383 (746)
++|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. ++ ..||++++|++|++++.|+++++
T Consensus 145 v~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~-~~-~~~d~v~~l~~G~i~~~g~~~~~ 222 (274)
T PRK13644 145 VALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLE-EL-HDADRIIVMDRGKIVLEGEPENV 222 (274)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HH-hhCCEEEEEECCEEEEECCHHHH
Confidence 99999999999999999999999999999999999999877999999999976 45 56999999999999999998876
Q ss_pred H
Q 004537 384 M 384 (746)
Q Consensus 384 ~ 384 (746)
.
T Consensus 223 ~ 223 (274)
T PRK13644 223 L 223 (274)
T ss_pred h
Confidence 4
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-42 Score=364.07 Aligned_cols=221 Identities=25% Similarity=0.417 Sum_probs=184.2
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (746)
.|+++||+++|..+ ....+++|+|+|++|++||+++|+||||||||||+++|+|.. ++.+|+|.++|+++..
T Consensus 2 ~l~~~~l~~~~~~~---~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~--~p~~G~i~~~g~~i~~~~~ 76 (280)
T PRK13649 2 GINLQNVSYTYQAG---TPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLH--VPTQGSVRVDDTLITSTSK 76 (280)
T ss_pred eEEEEEEEEEcCCC---CccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC--CCCceEEEECCEEcccccc
Confidence 37899999998311 001246999999999999999999999999999999999954 3468999999998642
Q ss_pred -----hccCcEEEEecCC--cCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCc-cccccccCccccCCC
Q 004537 226 -----SLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVRGVS 297 (746)
Q Consensus 226 -----~~~~~i~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LS 297 (746)
.+++.|+|++|++ .+++ .||+||+.+..... ..+.++..++++++++.+||.+ ..+. .++.||
T Consensus 77 ~~~~~~~~~~i~~~~q~~~~~~~~-~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~~LS 147 (280)
T PRK13649 77 NKDIKQIRKKVGLVFQFPESQLFE-ETVLKDVAFGPQNF---GVSQEEAEALAREKLALVGISESLFEK-----NPFELS 147 (280)
T ss_pred ccCHHHHHhheEEEeeChhhhhcc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhC-----CcccCC
Confidence 2457799999997 4565 69999999865322 1234445567888999999963 3443 346899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEe
Q 004537 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (746)
Q Consensus 298 GGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~ 377 (746)
||||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+.+.||++++|++|++++.
T Consensus 148 gG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~ 226 (280)
T PRK13649 148 GGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMD-DVANYADFVYVLEKGKLVLS 226 (280)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH-HHHHhCCEEEEEECCEEEEe
Confidence 99999999999999999999999999999999999999999999877899999999975 56788999999999999999
Q ss_pred cCHHHHH
Q 004537 378 GKASEAM 384 (746)
Q Consensus 378 G~~~~~~ 384 (746)
|+++++.
T Consensus 227 g~~~~~~ 233 (280)
T PRK13649 227 GKPKDIF 233 (280)
T ss_pred CCHHHHh
Confidence 9998864
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-42 Score=361.27 Aligned_cols=218 Identities=24% Similarity=0.434 Sum_probs=185.8
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (746)
.++++|++++|. ...+.+|+|+|++|++||+++|+||||||||||+++|+|.. ++.+|+|.++|+++..
T Consensus 7 ~l~i~~l~~~~~------~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~--~~~~G~i~~~g~~~~~~~~ 78 (269)
T PRK13648 7 IIVFKNVSFQYQ------SDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIE--KVKSGEIFYNNQAITDDNF 78 (269)
T ss_pred eEEEEEEEEEcC------CCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC--CCCceEEEECCEECCcCCH
Confidence 699999999982 12246999999999999999999999999999999999964 3468999999998742
Q ss_pred -hccCcEEEEecCCc-CCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHH
Q 004537 226 -SLKSKIGFVTQDDV-LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (746)
Q Consensus 226 -~~~~~i~yv~Q~~~-l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqR 303 (746)
..++.++|++|++. +++..|+++|+.+..... ....+...++++++++.+++.+..++. ++.||||||||
T Consensus 79 ~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qr 150 (269)
T PRK13648 79 EKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENH---AVPYDEMHRRVSEALKQVDMLERADYE-----PNALSGGQKQR 150 (269)
T ss_pred HHHHhheeEEEeChHHhcccccHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCC-----cccCCHHHHHH
Confidence 35678999999984 677789999998875422 123444556788999999998766653 46899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHH
Q 004537 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (746)
Q Consensus 304 v~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~ 382 (746)
++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++.. +. .||++++|++|++++.|++++
T Consensus 151 l~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~-~~-~~d~i~~l~~G~i~~~g~~~~ 228 (269)
T PRK13648 151 VAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSE-AM-EADHVIVMNKGTVYKEGTPTE 228 (269)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchH-Hh-cCCEEEEEECCEEEEecCHHH
Confidence 99999999999999999999999999999999999999764 8999999999864 54 499999999999999999987
Q ss_pred HH
Q 004537 383 AM 384 (746)
Q Consensus 383 ~~ 384 (746)
+.
T Consensus 229 ~~ 230 (269)
T PRK13648 229 IF 230 (269)
T ss_pred Hh
Confidence 64
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-42 Score=362.99 Aligned_cols=217 Identities=30% Similarity=0.548 Sum_probs=185.9
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh----
Q 004537 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (746)
|+++||+++|. +.+.+|+|+|++|++||+++|+||||||||||+++|+|.. ++.+|+|.++|+++..
T Consensus 2 l~~~~l~~~~~-------~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~--~~~~G~i~~~g~~~~~~~~~ 72 (275)
T PRK13639 2 LETRDLKYSYP-------DGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGIL--KPTSGEVLIKGEPIKYDKKS 72 (275)
T ss_pred EEEEEEEEEeC-------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC--CCCccEEEECCEECccccch
Confidence 78999999982 2346999999999999999999999999999999999954 3568999999998731
Q ss_pred --hccCcEEEEecCC--cCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHH
Q 004537 226 --SLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301 (746)
Q Consensus 226 --~~~~~i~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGer 301 (746)
.+++.|+|++|++ .+++ .||.||+.++.... ....++..+++.++++.+||.+..++. ++.||||||
T Consensus 73 ~~~~~~~i~~v~q~~~~~~~~-~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~-----~~~LS~Gq~ 143 (275)
T PRK13639 73 LLEVRKTVGIVFQNPDDQLFA-PTVEEDVAFGPLNL---GLSKEEVEKRVKEALKAVGMEGFENKP-----PHHLSGGQK 143 (275)
T ss_pred HHHHHhheEEEeeChhhhhcc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchhhcCC-----hhhCCHHHH
Confidence 2467899999996 3454 69999998864321 233445556788999999998776654 468999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHH
Q 004537 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 381 (746)
Q Consensus 302 qRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 381 (746)
||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++. .+.+.||++++|++|++++.|+++
T Consensus 144 qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~-~~~~~~d~i~~l~~G~i~~~g~~~ 222 (275)
T PRK13639 144 KRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVD-LVPVYADKVYVMSDGKIIKEGTPK 222 (275)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEeCCHH
Confidence 9999999999999999999999999999999999999999877999999999975 567789999999999999999998
Q ss_pred HHHH
Q 004537 382 EAMA 385 (746)
Q Consensus 382 ~~~~ 385 (746)
++..
T Consensus 223 ~~~~ 226 (275)
T PRK13639 223 EVFS 226 (275)
T ss_pred HHhc
Confidence 8753
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-42 Score=361.70 Aligned_cols=207 Identities=26% Similarity=0.428 Sum_probs=180.6
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCChhcc
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~ 228 (746)
.|+++||+++| +++.+|+|+|++|++||+++|+||||||||||+++|+|.. ++.+|+|.++|.++. .++
T Consensus 12 ~l~i~~l~~~~--------~~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~--~p~~G~i~~~g~~~~-~~~ 80 (257)
T PRK11247 12 PLLLNAVSKRY--------GERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLE--TPSAGELLAGTAPLA-EAR 80 (257)
T ss_pred cEEEEEEEEEE--------CCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC--CCCCeEEEECCEEHH-Hhh
Confidence 59999999998 3457999999999999999999999999999999999964 346899999998763 456
Q ss_pred CcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHHH
Q 004537 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGN 308 (746)
Q Consensus 229 ~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~ 308 (746)
+.++|++|++.+++.+||+||+.+... . ...+++.++++.+||.+..+.. +..||||||||++|||
T Consensus 81 ~~i~~v~q~~~l~~~~tv~enl~~~~~----~-----~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgGqkqrl~lar 146 (257)
T PRK11247 81 EDTRLMFQDARLLPWKKVIDNVGLGLK----G-----QWRDAALQALAAVGLADRANEW-----PAALSGGQKQRVALAR 146 (257)
T ss_pred CceEEEecCccCCCCCcHHHHHHhccc----c-----hHHHHHHHHHHHcCChhHhcCC-----hhhCCHHHHHHHHHHH
Confidence 789999999999998999999987521 0 1235678899999998766643 4689999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHH
Q 004537 309 EIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 381 (746)
Q Consensus 309 aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~-~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 381 (746)
+|+.+|++|||||||+|||+.++..+.+.|+++.+ .|+|||++||++. .+.+.||++++|++|++++.|+.+
T Consensus 147 aL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~-~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 147 ALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVS-EAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEeecccc
Confidence 99999999999999999999999999999999865 4899999999975 467889999999999999988754
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-42 Score=371.29 Aligned_cols=227 Identities=26% Similarity=0.435 Sum_probs=190.9
Q ss_pred eEEEEeEEEEEeeccc--cccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh-
Q 004537 149 YLKFTDVTYKVILKGM--TSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~--~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~- 225 (746)
.|+++||++.|..+.. ...+...+|+||||+|++||+++|+|+||||||||+++|+|.+ ++.+|+|.++|+++..
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~--~p~~G~i~~~g~~l~~~ 82 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIE--TPTGGELYYQGQDLLKA 82 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCC--CCCCcEEEECCEEcCcC
Confidence 5999999999843210 0012357999999999999999999999999999999999964 2468999999998742
Q ss_pred ------hccCcEEEEecCC--cCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCc-cccccccCccccCC
Q 004537 226 ------SLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVRGV 296 (746)
Q Consensus 226 ------~~~~~i~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~L 296 (746)
.++++|+||+|++ .+.|.+||.+++....... ....+.+..+++.++++.+||.+ ..+ .++++|
T Consensus 83 ~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gL~~~~~~-----~~p~~L 155 (327)
T PRK11308 83 DPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLIN--TSLSAAERREKALAMMAKVGLRPEHYD-----RYPHMF 155 (327)
T ss_pred CHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHc--cCCCHHHHHHHHHHHHHHCCCChHHhc-----CCCccC
Confidence 2467899999998 5889999999998765432 12345566778999999999963 444 356799
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEE
Q 004537 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLL 375 (746)
Q Consensus 297 SGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv 375 (746)
||||||||+|||||+.+|++||+||||++||..++.++++.|+++.++ |.|+|++|||+. .+.+.||+|++|++|+++
T Consensus 156 SgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~adrv~vm~~G~iv 234 (327)
T PRK11308 156 SGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLS-VVEHIADEVMVMYLGRCV 234 (327)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999764 999999999975 466789999999999999
Q ss_pred EecCHHHHHH
Q 004537 376 YFGKASEAMA 385 (746)
Q Consensus 376 ~~G~~~~~~~ 385 (746)
+.|+.+++.+
T Consensus 235 e~g~~~~~~~ 244 (327)
T PRK11308 235 EKGTKEQIFN 244 (327)
T ss_pred EECCHHHHhc
Confidence 9999988753
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-39 Score=407.39 Aligned_cols=223 Identities=21% Similarity=0.369 Sum_probs=196.6
Q ss_pred ceEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh--
Q 004537 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (746)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (746)
..|+++||++.|. ++++.+|+|+|+++++||+++|+||||||||||+|+|+|... +++|+|.++|+++..
T Consensus 927 ~~L~I~nLsK~y~------~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~--PtsG~I~i~G~dI~~~~ 998 (2272)
T TIGR01257 927 PGVCVKNLVKIFE------PSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLP--PTSGTVLVGGKDIETNL 998 (2272)
T ss_pred ceEEEEeEEEEec------CCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCC--CCceEEEECCEECcchH
Confidence 4699999999982 124679999999999999999999999999999999999653 568999999998853
Q ss_pred -hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHH
Q 004537 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (746)
Q Consensus 226 -~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv 304 (746)
..|+.+|||+|++.+++.+||+||+.+.++.+. .+.++.+++++++++.+||++..++. +++|||||||||
T Consensus 999 ~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lkg---~~~~~~~~~v~~lL~~vgL~~~~~~~-----~~~LSGGqKQRL 1070 (2272)
T TIGR01257 999 DAVRQSLGMCPQHNILFHHLTVAEHILFYAQLKG---RSWEEAQLEMEAMLEDTGLHHKRNEE-----AQDLSGGMQRKL 1070 (2272)
T ss_pred HHHhhcEEEEecCCcCCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchhhcCC-----hhhCCHHHHHHH
Confidence 346789999999999999999999999876542 33445567789999999998877765 468999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHH
Q 004537 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (746)
Q Consensus 305 ~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (746)
+||+||+.+|+||||||||+|||+.++..+.+.|++++ +|+|||++||++. ++..+||||++|++|+++..|+++++.
T Consensus 1071 sLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~-~g~TIIltTHdmd-ea~~laDrI~iL~~GkL~~~Gs~~~Lk 1148 (2272)
T TIGR01257 1071 SVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR-SGRTIIMSTHHMD-EADLLGDRIAIISQGRLYCSGTPLFLK 1148 (2272)
T ss_pred HHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 99999999999999999999999999999999999995 5999999999975 577889999999999999999999998
Q ss_pred HHHH
Q 004537 385 AYFS 388 (746)
Q Consensus 385 ~~f~ 388 (746)
+.|.
T Consensus 1149 ~~~g 1152 (2272)
T TIGR01257 1149 NCFG 1152 (2272)
T ss_pred HhcC
Confidence 7774
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-42 Score=358.02 Aligned_cols=223 Identities=25% Similarity=0.412 Sum_probs=184.7
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCC-CCCccEEEECCEeCCh--
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-PTVGGSITYNDHPYSK-- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~-~~~~G~I~~~G~~~~~-- 225 (746)
.++++|+++.| +++.+|+|+|+++++||+++|+||||||||||+|+|+|.... ++.+|+|.++|+++..
T Consensus 2 ~~~~~~l~~~~--------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~ 73 (246)
T PRK14269 2 IAKTTNLNLFY--------GKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQD 73 (246)
T ss_pred ceeeeeeEEEE--------CCEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCC
Confidence 47899999998 235799999999999999999999999999999999996432 2468999999998752
Q ss_pred --hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHH
Q 004537 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (746)
Q Consensus 226 --~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqR 303 (746)
..++.++|++|++.+|+ .||+||+.++...+.. .......++++.++++.++|.+...... +..++.||||||||
T Consensus 74 ~~~~~~~i~~~~q~~~l~~-~tv~eni~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G~~qr 150 (246)
T PRK14269 74 VVALRKNVGMVFQQPNVFV-KSIYENISYAPKLHGM-IKNKDEEEALVVDCLQKVGLFEEVKDKL-KQNALALSGGQQQR 150 (246)
T ss_pred HHHHhhhEEEEecCCcccc-ccHHHHhhhHHhhcCc-ccChHHHHHHHHHHHHHcCCChhhhHHh-cCCcccCCHHHHHH
Confidence 34678999999999997 6999999987533210 0012334456788999999954221111 23456899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHH
Q 004537 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (746)
Q Consensus 304 v~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 383 (746)
++|||+|+.+|++++|||||+|||+.++..+.+.|+++.+ |+|+|++||++. ++.+.||++++|++|++++.|+++++
T Consensus 151 v~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 228 (246)
T PRK14269 151 LCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSH-NLSMIMVTHNMQ-QGKRVADYTAFFHLGELIEFGESKEF 228 (246)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH-HHHhhCcEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999999999865 899999999975 46788999999999999999998886
Q ss_pred H
Q 004537 384 M 384 (746)
Q Consensus 384 ~ 384 (746)
.
T Consensus 229 ~ 229 (246)
T PRK14269 229 F 229 (246)
T ss_pred H
Confidence 4
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-42 Score=363.90 Aligned_cols=218 Identities=30% Similarity=0.526 Sum_probs=187.3
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (746)
.++++||+++|. +++.+|+|+||+|++||+++|+||||||||||+|+|+|.. ++.+|+|.++|+++..
T Consensus 3 ~l~~~~l~~~~~-------~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~--~p~~G~i~~~g~~~~~~~~ 73 (277)
T PRK13652 3 LIETRDLCYSYS-------GSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGIL--KPTSGSVLIRGEPITKENI 73 (277)
T ss_pred eEEEEEEEEEeC-------CCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC--CCCceEEEECCEECCcCCH
Confidence 488999999982 2346999999999999999999999999999999999954 3568999999998742
Q ss_pred -hccCcEEEEecCCc--CCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHH
Q 004537 226 -SLKSKIGFVTQDDV--LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (746)
Q Consensus 226 -~~~~~i~yv~Q~~~--l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerq 302 (746)
..++.++||+|++. ++ ..||.||+.+..... ..+.+...++++++++.+||.+..++. ++.|||||||
T Consensus 74 ~~~~~~i~~v~q~~~~~~~-~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~Gq~q 144 (277)
T PRK13652 74 REVRKFVGLVFQNPDDQIF-SPTVEQDIAFGPINL---GLDEETVAHRVSSALHMLGLEELRDRV-----PHHLSGGEKK 144 (277)
T ss_pred HHHHhheEEEecCcccccc-cccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCC-----cccCCHHHHH
Confidence 35678999999973 45 579999998865422 234455566788999999998776654 4689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHH
Q 004537 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 381 (746)
Q Consensus 303 Rv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 381 (746)
|++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+.||++++|++|++++.|+++
T Consensus 145 rl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~-~~~~~~drv~~l~~G~i~~~g~~~ 223 (277)
T PRK13652 145 RVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLD-LVPEMADYIYVMDKGRIVAYGTVE 223 (277)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEECCeEEEECCHH
Confidence 999999999999999999999999999999999999999875 899999999976 577899999999999999999998
Q ss_pred HHHH
Q 004537 382 EAMA 385 (746)
Q Consensus 382 ~~~~ 385 (746)
++.+
T Consensus 224 ~~~~ 227 (277)
T PRK13652 224 EIFL 227 (277)
T ss_pred HHhc
Confidence 8753
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-42 Score=378.91 Aligned_cols=203 Identities=26% Similarity=0.463 Sum_probs=178.3
Q ss_pred cceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh----h----ccCcEEEEecCCcCCC
Q 004537 171 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----S----LKSKIGFVTQDDVLFP 242 (746)
Q Consensus 171 ~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~----~----~~~~i~yv~Q~~~l~~ 242 (746)
.+|+|+||+|++||+++|+||||||||||+|+|+|.. . +.+|+|.++|+++.. . .+++++||+|++.+|+
T Consensus 42 ~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~-~-p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~ 119 (400)
T PRK10070 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLI-E-PTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMP 119 (400)
T ss_pred EEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCC-C-CCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCC
Confidence 4899999999999999999999999999999999954 3 468999999998742 1 1357999999999999
Q ss_pred CCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 004537 243 HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEP 322 (746)
Q Consensus 243 ~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~illLDEP 322 (746)
++||+||+.++...+ ..+.++..+++.++++.+||.+..++. ++.|||||||||+|||||+.+|++||||||
T Consensus 120 ~~Tv~enl~~~~~~~---~~~~~~~~~~~~e~L~~~gL~~~~~~~-----~~~LSgGq~QRv~LArAL~~~P~iLLLDEP 191 (400)
T PRK10070 120 HMTVLDNTAFGMELA---GINAEERREKALDALRQVGLENYAHSY-----PDELSGGMRQRVGLARALAINPDILLMDEA 191 (400)
T ss_pred CCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCChhhhcC-----cccCCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 999999999986543 233455567788999999998766654 568999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHH
Q 004537 323 TSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (746)
Q Consensus 323 TsgLD~~~~~~i~~~L~~l~~-~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (746)
|+|||+.++..+.+.|+++.+ .|+|||++||++. ++.++||+|++|++|++++.|+++++.
T Consensus 192 ts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~-~~~~~~Dri~vL~~G~i~~~g~~~~l~ 253 (400)
T PRK10070 192 FSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLD-EAMRIGDRIAIMQNGEVVQVGTPDEIL 253 (400)
T ss_pred CccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHH-HHHHhCCEEEEEECCEEEecCCHHHHH
Confidence 999999999999999999975 4899999999975 577899999999999999999998875
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-42 Score=361.78 Aligned_cols=220 Identities=27% Similarity=0.484 Sum_probs=185.6
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCC--CccEEEECCEeCCh-
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPT--VGGSITYNDHPYSK- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~--~~G~I~~~G~~~~~- 225 (746)
.|+++||+++| +++.+|+|+||++++||+++|+||||||||||+++|+|... |. .+|+|.++|.++..
T Consensus 4 ~l~~~nl~~~~--------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-p~~~~~G~i~~~g~~~~~~ 74 (262)
T PRK09984 4 IIRVEKLAKTF--------NQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLIT-GDKSAGSHIELLGRTVQRE 74 (262)
T ss_pred EEEEeeEEEEe--------CCeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCC-CCCCCceEEEECCEecccc
Confidence 68999999998 34579999999999999999999999999999999999643 32 36999999988632
Q ss_pred --------hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCC-----CCcHHHHHHHHHHHHHHcCCCccccccccCcc
Q 004537 226 --------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPN-----TLTKQQKEKRAIDVINELGLERCQDTMIGGSF 292 (746)
Q Consensus 226 --------~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~-----~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~ 292 (746)
..++.++|++|++.+++.+||+||+.+......+. ....+..+++++++++.+||++..+..
T Consensus 75 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~----- 149 (262)
T PRK09984 75 GRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQR----- 149 (262)
T ss_pred cccchhHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCC-----
Confidence 23567999999999999899999998764211100 011233456788999999998766654
Q ss_pred ccCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeC
Q 004537 293 VRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGK 371 (746)
Q Consensus 293 ~~~LSGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~ 371 (746)
+..|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. .+.+.||++++|++
T Consensus 150 ~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~-~~~~~~d~i~~l~~ 228 (262)
T PRK09984 150 VSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVD-YALRYCERIVALRQ 228 (262)
T ss_pred ccccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC
Confidence 4689999999999999999999999999999999999999999999999764 899999999975 46788999999999
Q ss_pred CeEEEecCHHHH
Q 004537 372 GSLLYFGKASEA 383 (746)
Q Consensus 372 G~iv~~G~~~~~ 383 (746)
|++++.|++++.
T Consensus 229 g~i~~~g~~~~~ 240 (262)
T PRK09984 229 GHVFYDGSSQQF 240 (262)
T ss_pred CEEEEeCCHHHh
Confidence 999999998763
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-42 Score=360.03 Aligned_cols=224 Identities=25% Similarity=0.421 Sum_probs=185.9
Q ss_pred CceEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCC-C--CCccEEEECCEeC
Q 004537 147 PIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-P--TVGGSITYNDHPY 223 (746)
Q Consensus 147 ~~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~-~--~~~G~I~~~G~~~ 223 (746)
...++++|++++| +++.+|+|+|++|++||+++|+||||||||||+++|+|.... | +.+|+|.++|+++
T Consensus 11 ~~~l~~~~l~~~~--------~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~ 82 (260)
T PRK10744 11 PSKIQVRNLNFYY--------GKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENI 82 (260)
T ss_pred CceEEEEEEEEEe--------CCeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEc
Confidence 3469999999998 234699999999999999999999999999999999996531 2 3589999999987
Q ss_pred Ch------hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCC
Q 004537 224 SK------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVS 297 (746)
Q Consensus 224 ~~------~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS 297 (746)
.. .++++++|++|++.+++ .||+||+.+...... ..+.++..++++++++.+++.+...... +..+..||
T Consensus 83 ~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS 158 (260)
T PRK10744 83 LTPKQDIALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFE--KLSRAEMDERVEWALTKAALWNEVKDKL-HQSGYSLS 158 (260)
T ss_pred cccccchHHHhcceEEEecCCccCc-CcHHHHHhhhHhhcC--CCCHHHHHHHHHHHHHHcCCChhhHHHH-hcCCCCCC
Confidence 31 34678999999998887 799999998754221 1334445567889999999853211111 23456899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEe
Q 004537 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (746)
Q Consensus 298 GGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~ 377 (746)
||||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++.+ ++|||++||++. .+.+.||++++|++|++++.
T Consensus 159 ~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~ 236 (260)
T PRK10744 159 GGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQ-DYTVVIVTHNMQ-QAARCSDYTAFMYLGELIEF 236 (260)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999964 789999999975 46788999999999999999
Q ss_pred cCHHHHH
Q 004537 378 GKASEAM 384 (746)
Q Consensus 378 G~~~~~~ 384 (746)
|+++++.
T Consensus 237 g~~~~~~ 243 (260)
T PRK10744 237 GNTDTIF 243 (260)
T ss_pred CCHHHHH
Confidence 9988864
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-42 Score=361.34 Aligned_cols=220 Identities=26% Similarity=0.456 Sum_probs=186.3
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (746)
.++++|++++| +++.+|+|+||++++||+++|+||||||||||+++|+|.. ++.+|+|.++|+++..
T Consensus 2 ~l~~~~l~~~~--------~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~--~~~~G~i~~~g~~~~~~~~ 71 (255)
T PRK11231 2 TLRTENLTVGY--------GTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLL--TPQSGTVFLGDKPISMLSS 71 (255)
T ss_pred EEEEEeEEEEE--------CCEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCc--CCCCcEEEECCEEhHHCCH
Confidence 48899999998 3457999999999999999999999999999999999954 3468999999998642
Q ss_pred -hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCC-CCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHH
Q 004537 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLP-NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (746)
Q Consensus 226 -~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqR 303 (746)
..++.++|++|++.+++.+|+.||+.++...... .........++++++++.+||.+..++. ++.||||||||
T Consensus 72 ~~~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qr 146 (255)
T PRK11231 72 RQLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRR-----LTDLSGGQRQR 146 (255)
T ss_pred HHHhhheEEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCC-----cccCCHHHHHH
Confidence 3456799999999988889999999886321000 0011223455678899999998766654 46899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHH
Q 004537 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (746)
Q Consensus 304 v~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 383 (746)
++|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. ++.+.||++++|++|++++.|+++++
T Consensus 147 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 225 (255)
T PRK11231 147 AFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLN-QASRYCDHLVVLANGHVMAQGTPEEV 225 (255)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHhcCEEEEEECCeEEEEcCHHHh
Confidence 99999999999999999999999999999999999999877999999999975 57789999999999999999998876
Q ss_pred H
Q 004537 384 M 384 (746)
Q Consensus 384 ~ 384 (746)
.
T Consensus 226 ~ 226 (255)
T PRK11231 226 M 226 (255)
T ss_pred c
Confidence 4
|
|
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-42 Score=371.84 Aligned_cols=229 Identities=21% Similarity=0.311 Sum_probs=186.9
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCC--CCCccEEEECCEeCCh-
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME--PTVGGSITYNDHPYSK- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~--~~~~G~I~~~G~~~~~- 225 (746)
.|+++||+++|..+ .+...+|+||||+|++||+++|+|+||||||||+++|+|.... .+.+|+|.++|+++..
T Consensus 3 ~L~v~~l~~~y~~~----~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~ 78 (330)
T PRK15093 3 LLDIRNLTIEFKTS----DGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRL 78 (330)
T ss_pred eEEEeeeEEEEeCC----CCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcC
Confidence 58999999999432 1345799999999999999999999999999999999996532 1358999999998742
Q ss_pred ---h----ccCcEEEEecCCc--CCCCCCHHHHHHHHHhccCCCC---CcHHHHHHHHHHHHHHcCCCccccccccCccc
Q 004537 226 ---S----LKSKIGFVTQDDV--LFPHLTVKETLTYAALLRLPNT---LTKQQKEKRAIDVINELGLERCQDTMIGGSFV 293 (746)
Q Consensus 226 ---~----~~~~i~yv~Q~~~--l~~~lTV~E~l~~~~~~~~~~~---~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~ 293 (746)
. .++.|+||+|++. +.|.+||.+++........... ....+..+++.++++.+||.+..+ ..+.++
T Consensus 79 ~~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~--~~~~~p 156 (330)
T PRK15093 79 SPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKD--AMRSFP 156 (330)
T ss_pred CHHHHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHH--HHhCCc
Confidence 1 1357999999985 6788999999986432110000 112344567889999999975322 113456
Q ss_pred cCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCC
Q 004537 294 RGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKG 372 (746)
Q Consensus 294 ~~LSGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G 372 (746)
.+|||||||||+|||||+.+|++|||||||+|||+.++.++++.|+++.++ |.|||++|||+. .+.++||+|++|++|
T Consensus 157 ~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~-~v~~~~dri~vm~~G 235 (330)
T PRK15093 157 YELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQ-MLSQWADKINVLYCG 235 (330)
T ss_pred hhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEECC
Confidence 799999999999999999999999999999999999999999999999874 899999999975 577889999999999
Q ss_pred eEEEecCHHHHH
Q 004537 373 SLLYFGKASEAM 384 (746)
Q Consensus 373 ~iv~~G~~~~~~ 384 (746)
+|++.|+++++.
T Consensus 236 ~ive~g~~~~i~ 247 (330)
T PRK15093 236 QTVETAPSKELV 247 (330)
T ss_pred EEEEECCHHHHH
Confidence 999999998875
|
|
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-44 Score=386.81 Aligned_cols=361 Identities=25% Similarity=0.319 Sum_probs=276.2
Q ss_pred HHHHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeeccccccceecchhchhhhhh
Q 004537 13 TKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSGAALS 92 (746)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 92 (746)
.-+|.....+..++.+.-+.|+++|-+-.+.+.++..+.-....+..+.-....|.+.-.|+.+-+.+|.--+-.|+-++
T Consensus 189 eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~~~~~~~L~~~~~asd~~~~~~~~Sr~~Rm~lQs~iLg~GA~Lv 268 (580)
T COG4618 189 EASEASIRANQLADATLRNAEVIEAMGMLGNLAKRWGRFNAAYLSAQERASDRNGAFGALSRALRMALQSAVLGLGAWLV 268 (580)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcceeeE
Confidence 33556666666777777788999999998999888887776666665555555666666688888888888888999999
Q ss_pred hhcccccchhhhhcc---ccc-Chhhhcc-CCC-----CCCCCCcccccccCCCCCCCCCCCCCCceEEEEeEEEEEeec
Q 004537 93 RASSASLGLSFSFTG---FTM-PPDEIAD-SKP-----FSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFTDVTYKVILK 162 (746)
Q Consensus 93 ~~~~~~~~~~~~~~~---~~~-~~~~~~~-~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~nvs~~~~~~ 162 (746)
-.+.++-|....=+- -.. |.+.... .+. .++.++.+-+..-+...+ ....|.....|.++++++.
T Consensus 269 i~ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~~~-~m~LP~P~g~L~Ve~l~~~---- 343 (580)
T COG4618 269 IKGEITPGMMIAGSILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAELPAAAE-RMPLPAPQGALSVERLTAA---- 343 (580)
T ss_pred EcCcCCcchhhHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccC-CCCCCCCCceeeEeeeeec----
Confidence 999999998754332 222 2221110 010 122223333322222111 1233444457999999873
Q ss_pred cccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh----hccCcEEEEecCC
Q 004537 163 GMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDD 238 (746)
Q Consensus 163 ~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~----~~~~~i~yv~Q~~ 238 (746)
++..++++|+|+||++.+||.++|+||||||||||.|+|.|.. ++.+|.|.+||.++++ .+-++|||.|||-
T Consensus 344 --PPg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w--~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdV 419 (580)
T COG4618 344 --PPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIW--PPTSGSVRLDGADLRQWDREQLGRHIGYLPQDV 419 (580)
T ss_pred --CCCCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHccc--ccCCCcEEecchhhhcCCHHHhccccCcCcccc
Confidence 3556789999999999999999999999999999999999954 3569999999998853 4568899999999
Q ss_pred cCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHHHHHhhCCCEEE
Q 004537 239 VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 318 (746)
Q Consensus 239 ~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~ill 318 (746)
.||+. ||.|||.=...-..++.+-++.+.+.++|++-. +++.+||.||+.. ..||||||||+++||||..||.+++
T Consensus 420 eLF~G-TIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~--lP~GYdT~iG~~G-~~LSgGQRQRIaLARAlYG~P~lvV 495 (580)
T COG4618 420 ELFDG-TIAENIARFGEEADPEKVIEAARLAGVHELILR--LPQGYDTRIGEGG-ATLSGGQRQRIALARALYGDPFLVV 495 (580)
T ss_pred eecCC-cHHHHHHhccccCCHHHHHHHHHHcChHHHHHh--CcCCccCccCCCC-CCCCchHHHHHHHHHHHcCCCcEEE
Confidence 99985 999999732211111112233444557777765 4999999999754 5799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHHHHHH
Q 004537 319 LDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFS 388 (746)
Q Consensus 319 LDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~~f~ 388 (746)
||||-|+||.+.+..+.+.|.+++++|.|+|+++|+|+ +...+|+|++|++|++-.+|+.+|+++...
T Consensus 496 LDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs--~L~~~Dkilvl~~G~~~~FG~r~eVLa~~~ 563 (580)
T COG4618 496 LDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPS--ALASVDKILVLQDGRIAAFGPREEVLAKVL 563 (580)
T ss_pred ecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHH--HHhhcceeeeecCChHHhcCCHHHHHHHhc
Confidence 99999999999999999999999999999999999987 578899999999999999999999998764
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-42 Score=361.84 Aligned_cols=226 Identities=23% Similarity=0.428 Sum_probs=186.4
Q ss_pred eEEEEeEEEEEeecc-ccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh--
Q 004537 149 YLKFTDVTYKVILKG-MTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~-~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (746)
.|+++||+++|.... ....+++.+|+|+|++|++||+++|+||||||||||+++|+|.. ++.+|+|.++|+++..
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~--~p~~G~i~~~g~~i~~~~ 79 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLE--KPAQGTVSFRGQDLYQLD 79 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCC--CCCCcEEEECCEEccccC
Confidence 488999999983210 00012467999999999999999999999999999999999954 3568999999998742
Q ss_pred -----hccCcEEEEecCC--cCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCC-ccccccccCccccCCC
Q 004537 226 -----SLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVS 297 (746)
Q Consensus 226 -----~~~~~i~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LS 297 (746)
..++.++|++|++ .+++.+||+||+.+..... .........+++.++++.+||. +..+. .++.||
T Consensus 80 ~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~~LS 152 (265)
T TIGR02769 80 RKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHL--TSLDESEQKARIAELLDMVGLRSEDADK-----LPRQLS 152 (265)
T ss_pred HHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHcCCChhhhhC-----ChhhCC
Confidence 1356799999997 4677899999998764321 1123344556788999999996 45554 346899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEE
Q 004537 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (746)
Q Consensus 298 GGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~ 376 (746)
|||||||+|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++. .+.+.||++++|++|++++
T Consensus 153 gGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~ 231 (265)
T TIGR02769 153 GGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLR-LVQSFCQRVAVMDKGQIVE 231 (265)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHHhcEEEEEeCCEEEE
Confidence 99999999999999999999999999999999999999999999865 899999999975 4667899999999999999
Q ss_pred ecCHHHHH
Q 004537 377 FGKASEAM 384 (746)
Q Consensus 377 ~G~~~~~~ 384 (746)
.|+++++.
T Consensus 232 ~g~~~~~~ 239 (265)
T TIGR02769 232 ECDVAQLL 239 (265)
T ss_pred ECCHHHHc
Confidence 99998875
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-42 Score=362.42 Aligned_cols=218 Identities=27% Similarity=0.480 Sum_probs=186.6
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (746)
.++++|++++|. .+++++|+|+|+++++||+++|+||||||||||+++|+|.. ++.+|+|.++|+++..
T Consensus 7 ~l~~~nl~~~~~------~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~--~p~~G~I~~~g~~i~~~~~ 78 (271)
T PRK13632 7 MIKVENVSFSYP------NSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLL--KPQSGEIKIDGITISKENL 78 (271)
T ss_pred EEEEEeEEEEcC------CCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC--CCCCceEEECCEecCcCCH
Confidence 699999999982 12457999999999999999999999999999999999954 3568999999998752
Q ss_pred -hccCcEEEEecCCc-CCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHH
Q 004537 226 -SLKSKIGFVTQDDV-LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (746)
Q Consensus 226 -~~~~~i~yv~Q~~~-l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqR 303 (746)
.+++.++|++|++. .++.+||+||+.++.... ..+.++..++++++++.+||.+..++. ++.||||||||
T Consensus 79 ~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qr 150 (271)
T PRK13632 79 KEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENK---KVPPKKMKDIIDDLAKKVGMEDYLDKE-----PQNLSGGQKQR 150 (271)
T ss_pred HHHhcceEEEEeCHHHhcCcccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCC-----cccCCHHHHHH
Confidence 35678999999974 566789999999875322 123444556788999999998776654 46899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHH
Q 004537 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (746)
Q Consensus 304 v~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~ 382 (746)
++|||||+.+|++|+|||||+|||+.++..+++.|++++++ ++|||+++|++.. + ..||++++|++|++++.|+.++
T Consensus 151 l~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~-~-~~~d~v~~l~~G~i~~~g~~~~ 228 (271)
T PRK13632 151 VAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDE-A-ILADKVIVFSEGKLIAQGKPKE 228 (271)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhH-H-hhCCEEEEEECCEEEEecCHHH
Confidence 99999999999999999999999999999999999999766 5999999999864 4 4799999999999999999887
Q ss_pred HH
Q 004537 383 AM 384 (746)
Q Consensus 383 ~~ 384 (746)
+.
T Consensus 229 ~~ 230 (271)
T PRK13632 229 IL 230 (271)
T ss_pred Hh
Confidence 64
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-42 Score=362.08 Aligned_cols=220 Identities=25% Similarity=0.426 Sum_probs=185.9
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (746)
.|+++||+++| +++.+|+|+||++++||+++|+||||||||||+++|+|.. ++.+|+|.++|+++..
T Consensus 11 ~l~i~~l~~~~--------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~--~~~~G~i~~~g~~~~~~~~ 80 (265)
T PRK10575 11 TFALRNVSFRV--------PGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQ--PPSEGEILLDAQPLESWSS 80 (265)
T ss_pred eEEEeeEEEEE--------CCEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCC--CCCCCEEEECCEehhhCCH
Confidence 69999999998 2357999999999999999999999999999999999954 3568999999988642
Q ss_pred -hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCC-CCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHH
Q 004537 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLP-NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (746)
Q Consensus 226 -~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqR 303 (746)
.+++.++|++|++.+++.+||.||+.++...... ....+....++++++++.++|++..++. ++.||||||||
T Consensus 81 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qr 155 (265)
T PRK10575 81 KAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRL-----VDSLSGGERQR 155 (265)
T ss_pred HHHhhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCC-----cccCCHHHHHH
Confidence 3456799999998888889999999876321100 0011123345688999999998766654 46899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHH
Q 004537 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (746)
Q Consensus 304 v~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~ 382 (746)
|+|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+.||++++|++|++++.|++++
T Consensus 156 v~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~-~i~~~~d~i~~l~~G~i~~~~~~~~ 234 (265)
T PRK10575 156 AWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDIN-MAARYCDYLVALRGGEMIAQGTPAE 234 (265)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCeEEEecCHHH
Confidence 99999999999999999999999999999999999999765 899999999975 5778899999999999999999877
Q ss_pred HH
Q 004537 383 AM 384 (746)
Q Consensus 383 ~~ 384 (746)
+.
T Consensus 235 ~~ 236 (265)
T PRK10575 235 LM 236 (265)
T ss_pred hc
Confidence 53
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-42 Score=353.79 Aligned_cols=210 Identities=27% Similarity=0.499 Sum_probs=173.5
Q ss_pred EEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCc
Q 004537 151 KFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSK 230 (746)
Q Consensus 151 ~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~ 230 (746)
+++||+++| +++.+|+|+|++|++||+++|+||||||||||+++|+|.. ++.+|+|.++|+++. ..++.
T Consensus 1 ~~~~l~~~~--------~~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~--~p~~G~i~~~g~~~~-~~~~~ 69 (213)
T cd03235 1 EVEDLTVSY--------GGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLL--KPTSGSIRVFGKPLE-KERKR 69 (213)
T ss_pred CcccceeEE--------CCEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCC--CCCCCEEEECCccHH-HHHhh
Confidence 367899988 2356999999999999999999999999999999999954 346899999998764 45678
Q ss_pred EEEEecCCcCC--CCCCHHHHHHHHHhccCC-CCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHH
Q 004537 231 IGFVTQDDVLF--PHLTVKETLTYAALLRLP-NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (746)
Q Consensus 231 i~yv~Q~~~l~--~~lTV~E~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA 307 (746)
++|++|++.++ ..+||+||+.+....... .....+...++++++++.+++++..++. +..||||||||++||
T Consensus 70 i~~v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrv~la 144 (213)
T cd03235 70 IGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQ-----IGELSGGQQQRVLLA 144 (213)
T ss_pred eEEeccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCC-----cccCCHHHHHHHHHH
Confidence 99999998763 237999999886432110 0011233456788999999998766654 468999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEec
Q 004537 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (746)
Q Consensus 308 ~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G 378 (746)
|||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. ++.+.||++++|++| +++.|
T Consensus 145 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 145 RALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLG-LVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEcCc-EeecC
Confidence 9999999999999999999999999999999999877899999999975 577889999999886 66654
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-42 Score=360.88 Aligned_cols=223 Identities=23% Similarity=0.399 Sum_probs=185.0
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCC---CCCccEEEECCEeCCh
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME---PTVGGSITYNDHPYSK 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~---~~~~G~I~~~G~~~~~ 225 (746)
.|+++||+++| +++.+|+|+|++|++||+++|+||||||||||+++|+|.... ++.+|+|.++|+++..
T Consensus 19 ~l~~~nl~~~~--------~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~ 90 (267)
T PRK14235 19 KMRARDVSVFY--------GEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYD 90 (267)
T ss_pred eEEEEeEEEEE--------CCEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcc
Confidence 69999999998 245799999999999999999999999999999999996532 1368999999998742
Q ss_pred ------hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHH
Q 004537 226 ------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (746)
Q Consensus 226 ------~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGG 299 (746)
.+++.++|++|++.+++. ||.||+.++...+.. ..++....+++.++++.+||.+...... +..++.||||
T Consensus 91 ~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LSgG 167 (267)
T PRK14235 91 PRLDVVELRARVGMVFQKPNPFPK-SIYENVAYGPRIHGL-ARSKAELDEIVETSLRKAGLWEEVKDRL-HEPGTGLSGG 167 (267)
T ss_pred cccchHHHhhceEEEecCCCCCCC-cHHHHHHHHHHhccc-ccchHHHHHHHHHHHHHcCCchhhhHHh-hCCcccCCHH
Confidence 246779999999998875 999999987543211 0123344567888999999964211111 2345689999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecC
Q 004537 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (746)
Q Consensus 300 erqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (746)
||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|++. .+.+.||++++|++|++++.|+
T Consensus 168 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~-~~tiiivtH~~~-~~~~~~d~v~~l~~G~i~~~g~ 245 (267)
T PRK14235 168 QQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ-NYTIVIVTHSMQ-QAARVSQRTAFFHLGNLVEVGD 245 (267)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc-CCeEEEEEcCHH-HHHhhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999975 789999999975 4678899999999999999999
Q ss_pred HHHHH
Q 004537 380 ASEAM 384 (746)
Q Consensus 380 ~~~~~ 384 (746)
++++.
T Consensus 246 ~~~~~ 250 (267)
T PRK14235 246 TEKMF 250 (267)
T ss_pred HHHHH
Confidence 88764
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-42 Score=351.30 Aligned_cols=206 Identities=30% Similarity=0.542 Sum_probs=173.0
Q ss_pred EEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh----h
Q 004537 151 KFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----S 226 (746)
Q Consensus 151 ~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~----~ 226 (746)
+++|++++|. +.++.+|+|+||++++||+++|+||||||||||+++|+|.. ++.+|+|.++|+++.. .
T Consensus 1 ~~~~l~~~~~------~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~--~~~~G~i~~~g~~~~~~~~~~ 72 (211)
T cd03225 1 ELKNLSFSYP------DGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLL--GPTSGEVLVDGKDLTKLSLKE 72 (211)
T ss_pred CceeEEEecC------CCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCC--CCCCceEEECCEEcccCCHHH
Confidence 3688999882 11257999999999999999999999999999999999964 3568999999998742 3
Q ss_pred ccCcEEEEecCCc-CCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHH
Q 004537 227 LKSKIGFVTQDDV-LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (746)
Q Consensus 227 ~~~~i~yv~Q~~~-l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~ 305 (746)
.++.++|++|++. .++.+||+||+.+..... ........++++++++.++|.+..++. +..|||||||||+
T Consensus 73 ~~~~i~~~~q~~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrv~ 144 (211)
T cd03225 73 LRRKVGLVFQNPDDQFFGPTVEEEVAFGLENL---GLPEEEIEERVEEALELVGLEGLRDRS-----PFTLSGGQKQRVA 144 (211)
T ss_pred HHhhceEEecChhhhcCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCcHhhhcCC-----cccCCHHHHHHHH
Confidence 4678999999974 355689999998865422 123344456788999999998766654 4689999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCe
Q 004537 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGS 373 (746)
Q Consensus 306 IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~ 373 (746)
|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. ++.+.||++++|++|+
T Consensus 145 laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 145 IAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLD-LLLELADRVIVLEDGK 211 (211)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeCCC
Confidence 999999999999999999999999999999999999877999999999975 5677899999999985
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=357.19 Aligned_cols=223 Identities=22% Similarity=0.408 Sum_probs=185.8
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCC-C--CCccEEEECCEeCCh
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-P--TVGGSITYNDHPYSK 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~-~--~~~G~I~~~G~~~~~ 225 (746)
.|+++|++++| +++.+|+|+|++|++||+++|+||||||||||+++|+|.... + +++|+|.++|+++..
T Consensus 4 ~l~~~nl~~~~--------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~ 75 (252)
T PRK14256 4 KVKLEQLNVHF--------GKNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYD 75 (252)
T ss_pred EEEEEEEEEEe--------CCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEccc
Confidence 58999999998 235699999999999999999999999999999999996531 2 258999999998742
Q ss_pred ------hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHH
Q 004537 226 ------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (746)
Q Consensus 226 ------~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGG 299 (746)
..++.++|++|++.+++.+||+||+.++.... ......+.++++++.++.+++.+...... +..+..||||
T Consensus 76 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G 152 (252)
T PRK14256 76 RGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLN--GRVNRSEADEIVESSLKRVALWDEVKDRL-KSNAMELSGG 152 (252)
T ss_pred ccCChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhc--CCCCHHHHHHHHHHHHHHcCCchhhhHHh-hCCcCcCCHH
Confidence 34678999999999999899999998764321 11223344566888999999864221111 1345689999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecC
Q 004537 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (746)
Q Consensus 300 erqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (746)
||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++. ++.+.||++++|++|++++.|+
T Consensus 153 ~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~~~ 230 (252)
T PRK14256 153 QQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE-KYTIIIVTHNMQ-QAARVSDYTAFFYMGDLVECGE 230 (252)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCcEEEEECCHH-HHHhhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999976 689999999975 5678899999999999999999
Q ss_pred HHHHH
Q 004537 380 ASEAM 384 (746)
Q Consensus 380 ~~~~~ 384 (746)
++++.
T Consensus 231 ~~~~~ 235 (252)
T PRK14256 231 TKKIF 235 (252)
T ss_pred HHHHH
Confidence 88864
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=362.33 Aligned_cols=220 Identities=27% Similarity=0.463 Sum_probs=187.4
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCC--ccEEEECCEeCCh-
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTV--GGSITYNDHPYSK- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~--~G~I~~~G~~~~~- 225 (746)
.|+++|+++.|. ...+++|+|+|++|++||+++|+||||||||||+++|+|... +.. +|+|.++|+++..
T Consensus 5 ~l~i~~l~~~~~------~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~-p~~g~~G~i~i~g~~~~~~ 77 (282)
T PRK13640 5 IVEFKHVSFTYP------DSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLL-PDDNPNSKITVDGITLTAK 77 (282)
T ss_pred eEEEEEEEEEcC------CCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccC-CCCCCCcEEEECCEECCcC
Confidence 699999999982 123469999999999999999999999999999999999653 332 2999999998752
Q ss_pred ---hccCcEEEEecCCc-CCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHH
Q 004537 226 ---SLKSKIGFVTQDDV-LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301 (746)
Q Consensus 226 ---~~~~~i~yv~Q~~~-l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGer 301 (746)
..+++++||+|++. +++..||+||+.|..... ..+.++..+++.++++.+||.+..++. ++.||||||
T Consensus 78 ~~~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~-----~~~LS~G~~ 149 (282)
T PRK13640 78 TVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENR---AVPRPEMIKIVRDVLADVGMLDYIDSE-----PANLSGGQK 149 (282)
T ss_pred CHHHHHhheEEEEECHHHhhccCCHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCChhHhcCC-----cccCCHHHH
Confidence 34678999999974 566789999999864322 234556667889999999998766654 578999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCH
Q 004537 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380 (746)
Q Consensus 302 qRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~ 380 (746)
||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++.. + ..||++++|++|++++.|++
T Consensus 150 qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~-~-~~~d~i~~l~~G~i~~~g~~ 227 (282)
T PRK13640 150 QRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDE-A-NMADQVLVLDDGKLLAQGSP 227 (282)
T ss_pred HHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-H-HhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999999765 8999999999764 4 57999999999999999999
Q ss_pred HHHHH
Q 004537 381 SEAMA 385 (746)
Q Consensus 381 ~~~~~ 385 (746)
+++..
T Consensus 228 ~~~~~ 232 (282)
T PRK13640 228 VEIFS 232 (282)
T ss_pred HHHhc
Confidence 88754
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-42 Score=354.89 Aligned_cols=212 Identities=26% Similarity=0.417 Sum_probs=179.2
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh----
Q 004537 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (746)
|+++||++.| +++++|+|+||++++||+++|+||||||||||+++|+|.. ++.+|+|.++|.++..
T Consensus 1 l~~~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~--~~~~G~i~~~g~~~~~~~~~ 70 (230)
T TIGR03410 1 LEVSNLNVYY--------GQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLL--PVKSGSIRLDGEDITKLPPH 70 (230)
T ss_pred CEEEeEEEEe--------CCeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCC--CCCCCEEEECCEECCCCCHH
Confidence 4789999998 2457999999999999999999999999999999999954 3468999999998742
Q ss_pred -hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcC-CCccccccccCccccCCCHHHHHH
Q 004537 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG-LERCQDTMIGGSFVRGVSGGERKR 303 (746)
Q Consensus 226 -~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-L~~~~~~~vg~~~~~~LSGGerqR 303 (746)
..++.++|++|++.+++.+|++||+.++..... .. ..+.++++++.++ +.+..++ .++.||||||||
T Consensus 71 ~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~---~~~~~~~~l~~~~~l~~~~~~-----~~~~LS~G~~qr 139 (230)
T TIGR03410 71 ERARAGIAYVPQGREIFPRLTVEENLLTGLAALP---RR---SRKIPDEIYELFPVLKEMLGR-----RGGDLSGGQQQQ 139 (230)
T ss_pred HHHHhCeEEeccCCcccCCCcHHHHHHHHHHhcC---cc---hHHHHHHHHHHHHhHHHHhhC-----ChhhCCHHHHHH
Confidence 135679999999999998999999998754321 11 1233566777775 4544444 356899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHH
Q 004537 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (746)
Q Consensus 304 v~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~ 382 (746)
++|||+|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+.||++++|++|++++.|++++
T Consensus 140 v~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~g~i~~~~~~~~ 218 (230)
T TIGR03410 140 LAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLD-FARELADRYYVMERGRVVASGAGDE 218 (230)
T ss_pred HHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999999874 899999999975 5777899999999999999999887
Q ss_pred H
Q 004537 383 A 383 (746)
Q Consensus 383 ~ 383 (746)
+
T Consensus 219 ~ 219 (230)
T TIGR03410 219 L 219 (230)
T ss_pred c
Confidence 6
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=362.41 Aligned_cols=222 Identities=23% Similarity=0.409 Sum_probs=187.2
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (746)
.++++|++++|.... +..++.+|+|+|++|++||+++|+||||||||||+++|+|.. ++.+|+|.++|.++..
T Consensus 4 ~l~~~~l~~~~~~~~--~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~--~~~~G~i~i~g~~i~~~~~ 79 (280)
T PRK13633 4 MIKCKNVSYKYESNE--ESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALL--IPSEGKVYVDGLDTSDEEN 79 (280)
T ss_pred eEEEeeeEEEcCCCC--CCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC--CCCCceEEECCEecccccc
Confidence 699999999983210 011357999999999999999999999999999999999964 3568999999998742
Q ss_pred --hccCcEEEEecCCc--CCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHH
Q 004537 226 --SLKSKIGFVTQDDV--LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301 (746)
Q Consensus 226 --~~~~~i~yv~Q~~~--l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGer 301 (746)
..++.++||+|++. +++ .||.||+.|+.... ..++.+.+++++++++.+||.+..++. ++.||||||
T Consensus 80 ~~~~~~~i~~v~q~~~~~~~~-~~v~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~LS~G~~ 150 (280)
T PRK13633 80 LWDIRNKAGMVFQNPDNQIVA-TIVEEDVAFGPENL---GIPPEEIRERVDESLKKVGMYEYRRHA-----PHLLSGGQK 150 (280)
T ss_pred HHHHhhheEEEecChhhhhcc-ccHHHHHHhhHhhc---CCCHHHHHHHHHHHHHHCCCHhHhhCC-----cccCCHHHH
Confidence 34678999999974 454 69999999875422 234455567789999999998877764 468999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCH
Q 004537 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380 (746)
Q Consensus 302 qRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~ 380 (746)
||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++.. +. .||++++|++|++++.|++
T Consensus 151 qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~-~~-~~d~v~~l~~G~i~~~g~~ 228 (280)
T PRK13633 151 QRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEE-AV-EADRIIVMDSGKVVMEGTP 228 (280)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHH-Hh-cCCEEEEEECCEEEEecCH
Confidence 9999999999999999999999999999999999999999764 9999999999874 54 4999999999999999999
Q ss_pred HHHHH
Q 004537 381 SEAMA 385 (746)
Q Consensus 381 ~~~~~ 385 (746)
+++..
T Consensus 229 ~~~~~ 233 (280)
T PRK13633 229 KEIFK 233 (280)
T ss_pred HHHhc
Confidence 88754
|
|
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-42 Score=351.93 Aligned_cols=210 Identities=29% Similarity=0.494 Sum_probs=181.9
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCChhccC
Q 004537 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKS 229 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~ 229 (746)
|+++|++++| +++.+|+|+||++++||+++|+||||||||||+++|+|.+ ++.+|+|.++|.++....++
T Consensus 1 l~l~~v~~~~--------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~--~~~~G~i~~~~~~~~~~~~~ 70 (223)
T TIGR03740 1 LETKNLSKRF--------GKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGIL--RPTSGEIIFDGHPWTRKDLH 70 (223)
T ss_pred CEEEeEEEEE--------CCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC--CCCceEEEECCEeccccccc
Confidence 4789999988 2357999999999999999999999999999999999964 35689999999987543345
Q ss_pred cEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHHHH
Q 004537 230 KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNE 309 (746)
Q Consensus 230 ~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~a 309 (746)
.++|++|++.+++.+|++||+.+...... .. .+++.++++.+||++..+.. +..||||||||++|||+
T Consensus 71 ~~~~~~q~~~~~~~~t~~~~~~~~~~~~~---~~----~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~~rv~lara 138 (223)
T TIGR03740 71 KIGSLIESPPLYENLTARENLKVHTTLLG---LP----DSRIDEVLNIVDLTNTGKKK-----AKQFSLGMKQRLGIAIA 138 (223)
T ss_pred cEEEEcCCCCccccCCHHHHHHHHHHHcC---CC----HHHHHHHHHHcCCcHHHhhh-----HhhCCHHHHHHHHHHHH
Confidence 79999999999988999999988654321 11 24577889999998766654 46899999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHH
Q 004537 310 IIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (746)
Q Consensus 310 L~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~ 382 (746)
|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. ++.+.||++++|++|++++.|++++
T Consensus 139 l~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 139 LLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILS-EVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred HhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCEEEEEeCCEEEEecChhh
Confidence 99999999999999999999999999999999877999999999975 4678899999999999999998753
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=358.49 Aligned_cols=222 Identities=24% Similarity=0.421 Sum_probs=184.6
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCC-CC--CccEEEECCEeCCh
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-PT--VGGSITYNDHPYSK 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~-~~--~~G~I~~~G~~~~~ 225 (746)
.|+++|+++.| +++.+|+|+|++|++||+++|+||||||||||+++|+|.... +. .+|+|.++|+++..
T Consensus 12 ~l~i~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~ 83 (259)
T PRK14274 12 VYQINGMNLWY--------GQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILK 83 (259)
T ss_pred eEEEeeEEEEE--------CCeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccc
Confidence 59999999998 245799999999999999999999999999999999996531 21 48999999998741
Q ss_pred ------hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHH
Q 004537 226 ------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (746)
Q Consensus 226 ------~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGG 299 (746)
..++.++|++|++.+++. ||+||+.+...... ...+++..++++++++.+++.+...... +..+++||||
T Consensus 84 ~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~l-~~~~~~LS~G 159 (259)
T PRK14274 84 GKVDLVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHG--TKNKKKLQEIVEKSLKDVALWDEVKDRL-HTQALSLSGG 159 (259)
T ss_pred cccCHHHHhhceEEEecCCccccc-CHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhhhh-hCCcccCCHH
Confidence 346779999999999885 99999988753221 1123444566788899998854211111 2345689999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecC
Q 004537 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (746)
Q Consensus 300 erqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (746)
||||++|||+|+.+|+++||||||+|||+.++..+.+.|+++.+ ++|+|++||++. .+.+.||++++|++|+++..|+
T Consensus 160 q~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~~G~i~~~g~ 237 (259)
T PRK14274 160 QQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE-KYTIVIVTHNMQ-QAARVSDQTAFFYMGELVECND 237 (259)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHH-HHHHhCCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999999999999965 799999999975 5778899999999999999999
Q ss_pred HHHHH
Q 004537 380 ASEAM 384 (746)
Q Consensus 380 ~~~~~ 384 (746)
++++.
T Consensus 238 ~~~~~ 242 (259)
T PRK14274 238 TNKMF 242 (259)
T ss_pred HHHHh
Confidence 98864
|
|
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-42 Score=347.15 Aligned_cols=220 Identities=29% Similarity=0.545 Sum_probs=205.0
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCChhcc
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~ 228 (746)
.+++++|+++| +++.+++|+||.++||++.+++|||||||||.+++|.|.+. +++|+|.++|.+++...+
T Consensus 2 ~L~ie~vtK~F--------g~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle--~~~G~I~~~g~~~~~~~~ 71 (300)
T COG4152 2 ALEIEGVTKSF--------GDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLE--PTEGEITWNGGPLSQEIK 71 (300)
T ss_pred ceEEecchhcc--------CceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCC--ccCceEEEcCcchhhhhh
Confidence 48899999988 67899999999999999999999999999999999999653 458999999999998889
Q ss_pred CcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHHH
Q 004537 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGN 308 (746)
Q Consensus 229 ~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~ 308 (746)
.+|||.|.+.-|+|.+||.|.|.|.+.++ .+++++.++++..+|+++++......+ +.+||.|++|++.+-.
T Consensus 72 ~rIGyLPEERGLy~k~tv~dql~yla~Lk---Gm~~~e~~~~~~~wLer~~i~~~~~~k-----Ik~LSKGnqQKIQfis 143 (300)
T COG4152 72 NRIGYLPEERGLYPKMTVEDQLKYLAELK---GMPKAEIQKKLQAWLERLEIVGKKTKK-----IKELSKGNQQKIQFIS 143 (300)
T ss_pred hhcccChhhhccCccCcHHHHHHHHHHhc---CCcHHHHHHHHHHHHHhccccccccch-----HHHhhhhhhHHHHHHH
Confidence 99999999999999999999999999886 477888999999999999998766654 4789999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHHHHH
Q 004537 309 EIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYF 387 (746)
Q Consensus 309 aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~~f 387 (746)
+++++|+++|||||+|||||.+.+.+-+.+.+++++|.|||+++|++. .+.++||++++|++|+.|.+|+.+++.+-|
T Consensus 144 aviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me-~vEeLCD~llmL~kG~~V~~G~v~~ir~~~ 221 (300)
T COG4152 144 AVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRME-HVEELCDRLLMLKKGQTVLYGTVEDIRRSF 221 (300)
T ss_pred HHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHH-HHHHHhhhhheecCCceEEeccHHHHHHhc
Confidence 999999999999999999999999999999999999999999999975 689999999999999999999999988755
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-42 Score=359.56 Aligned_cols=219 Identities=26% Similarity=0.451 Sum_probs=184.6
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh----
Q 004537 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (746)
|+++|+++.| +++.+|+|+|+++++||+++|+||||||||||+++|+|.. ++.+|+|.++|.++..
T Consensus 2 l~~~~l~~~~--------~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~--~~~~G~i~~~g~~~~~~~~~ 71 (256)
T TIGR03873 2 LRLSRVSWSA--------GGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGAL--RPDAGTVDLAGVDLHGLSRR 71 (256)
T ss_pred ceEEeEEEEE--------CCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCC--CCCCCEEEECCEEcccCCHH
Confidence 6889999998 3457999999999999999999999999999999999954 3468999999998743
Q ss_pred hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCC-CCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHH
Q 004537 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLP-NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (746)
Q Consensus 226 ~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv 304 (746)
..++.++|++|++.+++.+||+||+.++...... ......+..+++.++++.+++.+..++. +..||||||||+
T Consensus 72 ~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl 146 (256)
T TIGR03873 72 ARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRD-----MSTLSGGERQRV 146 (256)
T ss_pred HHhhheEEecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCC-----cccCCHHHHHHH
Confidence 3456799999998777789999999885321000 0011123345788999999997766654 468999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHH
Q 004537 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (746)
Q Consensus 305 ~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (746)
+|||+|+.+|++++|||||+|||+.++..+.+.|++++++|+|||+++|++. .+.+.||+|++|++|++++.|+.+++.
T Consensus 147 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 225 (256)
T TIGR03873 147 HVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLN-LAASYCDHVVVLDGGRVVAAGPPREVL 225 (256)
T ss_pred HHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCCEEEecCHHHhh
Confidence 9999999999999999999999999999999999999877899999999976 477899999999999999999988763
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-42 Score=354.57 Aligned_cols=216 Identities=27% Similarity=0.502 Sum_probs=187.1
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh--hc
Q 004537 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SL 227 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--~~ 227 (746)
++++|++++| +++++|+|+|+++++||+++|+||||||||||+++|+|.. ++.+|+|.++|.++.. ..
T Consensus 1 i~i~~l~~~~--------~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~--~~~~G~i~i~g~~~~~~~~~ 70 (237)
T TIGR00968 1 IEIANISKRF--------GSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLE--QPDSGRIRLNGQDATRVHAR 70 (237)
T ss_pred CEEEEEEEEE--------CCeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC--CCCceEEEECCEEcCcCChh
Confidence 4789999998 2457999999999999999999999999999999999964 3468999999998753 33
Q ss_pred cCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHH
Q 004537 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (746)
Q Consensus 228 ~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA 307 (746)
++.++|++|++.+|+.+|++||+.+....+ ........+.++++++.+++.+..++. ++.|||||+||++||
T Consensus 71 ~~~i~~~~q~~~~~~~~t~~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~lS~G~~qrl~la 142 (237)
T TIGR00968 71 DRKIGFVFQHYALFKHLTVRDNIAFGLEIR---KHPKAKIKARVEELLELVQLEGLGDRY-----PNQLSGGQRQRVALA 142 (237)
T ss_pred hcCEEEEecChhhccCCcHHHHHHhHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCC-----hhhCCHHHHHHHHHH
Confidence 567999999999999899999999875432 123334456778999999997666654 468999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHH
Q 004537 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (746)
Q Consensus 308 ~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (746)
|+|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+.||++++|++|++++.|+++++.
T Consensus 143 ral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~-~~~~~~d~i~~l~~g~i~~~~~~~~~~ 219 (237)
T TIGR00968 143 RALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQE-EAMEVADRIVVMSNGKIEQIGSPDEVY 219 (237)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCEEEEEECCEEEEecCHHHHH
Confidence 9999999999999999999999999999999998775 899999999975 567889999999999999999988874
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-42 Score=361.47 Aligned_cols=220 Identities=23% Similarity=0.399 Sum_probs=186.6
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (746)
.|+++||+++| +++.+|+|+|+++++||+++|+||||||||||+++|+|.. ++.+|+|.++|+++..
T Consensus 7 ~l~i~~l~~~~--------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~--~~~~G~i~~~g~~~~~~~~ 76 (265)
T PRK10253 7 RLRGEQLTLGY--------GKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLM--TPAHGHVWLDGEHIQHYAS 76 (265)
T ss_pred EEEEEEEEEEE--------CCEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCC--CCCCcEEEECCEEhhhCCH
Confidence 69999999998 2457999999999999999999999999999999999964 3468999999998742
Q ss_pred -hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCC-CCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHH
Q 004537 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPN-TLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (746)
Q Consensus 226 -~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqR 303 (746)
..++.++|++|++.+++.+||+||+.++.....+. ....+...++++++++.+||.+..++. ++.||||||||
T Consensus 77 ~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~Gq~qr 151 (265)
T PRK10253 77 KEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQS-----VDTLSGGQRQR 151 (265)
T ss_pred HHHhhheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCC-----cccCChHHHHH
Confidence 34567999999999998899999998753111000 001123445688999999998766653 56899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHH
Q 004537 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (746)
Q Consensus 304 v~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~ 382 (746)
++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.+.||++++|++|++++.|++++
T Consensus 152 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~ 230 (265)
T PRK10253 152 AWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLN-QACRYASHLIALREGKIVAQGAPKE 230 (265)
T ss_pred HHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999764 899999999975 5788999999999999999999887
Q ss_pred HH
Q 004537 383 AM 384 (746)
Q Consensus 383 ~~ 384 (746)
+.
T Consensus 231 ~~ 232 (265)
T PRK10253 231 IV 232 (265)
T ss_pred Hh
Confidence 64
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-41 Score=359.07 Aligned_cols=224 Identities=24% Similarity=0.383 Sum_probs=187.4
Q ss_pred CceEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCC---CCCccEEEECCEeC
Q 004537 147 PIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME---PTVGGSITYNDHPY 223 (746)
Q Consensus 147 ~~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~---~~~~G~I~~~G~~~ 223 (746)
...|+++||+++| +++++|+|+|+++++||+++|+||||||||||+++|+|.... .+.+|+|.++|+++
T Consensus 18 ~~~l~~~nl~~~~--------~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~ 89 (267)
T PRK14237 18 EIALSTKDLHVYY--------GKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDI 89 (267)
T ss_pred CeEEEEeeEEEEE--------CCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEc
Confidence 3479999999998 346799999999999999999999999999999999996532 14689999999987
Q ss_pred Ch------hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCC
Q 004537 224 SK------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVS 297 (746)
Q Consensus 224 ~~------~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS 297 (746)
.. ..++.++|++|++.+++ .||+||+.++.... ....++..++++.++++.++|.+..+... +..++.||
T Consensus 90 ~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~i~~~~-~~~~~~LS 165 (267)
T PRK14237 90 NRKEINVYEMRKHIGMVFQRPNPFA-KSIYENITFALERA--GVKDKKVLDEIVETSLKQAALWDQVKDDL-HKSALTLS 165 (267)
T ss_pred ccccCChHHHhcceEEEecCCcccc-ccHHHHHHhHHHhc--CCCCHHHHHHHHHHHHHHcCCCchhhhhh-cCCcccCC
Confidence 42 24677999999998887 59999999875321 11233445567888999999864322222 24567899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEe
Q 004537 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (746)
Q Consensus 298 GGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~ 377 (746)
||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ +.|||++||++. ++.+.||++++|++|++++.
T Consensus 166 ~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~i~~l~~G~i~~~ 243 (267)
T PRK14237 166 GGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKK-NYTIIIVTHNMQ-QAARASDYTAFFYLGDLIEY 243 (267)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhcCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999964 799999999976 57789999999999999999
Q ss_pred cCHHHHH
Q 004537 378 GKASEAM 384 (746)
Q Consensus 378 G~~~~~~ 384 (746)
|+++++.
T Consensus 244 g~~~~~~ 250 (267)
T PRK14237 244 DKTRNIF 250 (267)
T ss_pred CCHHHHh
Confidence 9998864
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=358.06 Aligned_cols=223 Identities=22% Similarity=0.392 Sum_probs=185.2
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCC-C--CCccEEEECCEeCC-
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-P--TVGGSITYNDHPYS- 224 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~-~--~~~G~I~~~G~~~~- 224 (746)
.++++||+++| +++.+|+|+|++|++||+++|+||||||||||+++|+|.... | +.+|+|.++|+++.
T Consensus 4 ~l~i~~v~~~~--------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~ 75 (258)
T PRK14241 4 RIDVKDLNIYY--------GSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYG 75 (258)
T ss_pred cEEEeeEEEEE--------CCEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccc
Confidence 58999999998 235799999999999999999999999999999999996532 1 25899999998863
Q ss_pred -----hhccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHH
Q 004537 225 -----KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (746)
Q Consensus 225 -----~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGG 299 (746)
..+++.++|++|++.+++.+||+||+.++...+. .......+++++++++.+||.+...... +..+.+||||
T Consensus 76 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G 152 (258)
T PRK14241 76 PGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNG--VRNKKDLDELVEKSLRGANLWNEVKDRL-DKPGGGLSGG 152 (258)
T ss_pred cccChHHHhcceEEEccccccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhhHh-hCCcccCCHH
Confidence 1346789999999999998999999998754321 1123444567888999998842111111 2345689999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEe------CCe
Q 004537 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG------KGS 373 (746)
Q Consensus 300 erqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~------~G~ 373 (746)
|||||+|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++. ++.+.||++++|+ +|+
T Consensus 153 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tviivsH~~~-~~~~~~d~i~~l~~~~~~~~g~ 230 (258)
T PRK14241 153 QQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ-DYTIVIVTHNMQ-QAARVSDQTAFFNLEATGKPGR 230 (258)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhCCEEEEEecccCCCCce
Confidence 99999999999999999999999999999999999999999965 789999999975 4778899999997 799
Q ss_pred EEEecCHHHHH
Q 004537 374 LLYFGKASEAM 384 (746)
Q Consensus 374 iv~~G~~~~~~ 384 (746)
+++.|+++++.
T Consensus 231 i~~~~~~~~~~ 241 (258)
T PRK14241 231 LVEIDDTEKIF 241 (258)
T ss_pred EEecCCHHHHH
Confidence 99999998874
|
|
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-43 Score=410.49 Aligned_cols=338 Identities=22% Similarity=0.257 Sum_probs=226.5
Q ss_pred hHHHHHHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeeccccccceecchhchhh
Q 004537 10 LARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSGA 89 (746)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 89 (746)
..++.+++.++..+...|.....+++|+++.+..+.+++.+...+......+.................-..+.-+..|+
T Consensus 171 ~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (529)
T TIGR02857 171 AARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELFATLSVALVAVYIG 250 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667778888899999999999999999999888876555443322210000000000000111111111123444
Q ss_pred hhhhhcccccchhhhhcccc----cChhhhccCCC------CCCCCCcccccccCCCCCCCCCCCCCCceEEEEeEEEEE
Q 004537 90 ALSRASSASLGLSFSFTGFT----MPPDEIADSKP------FSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFTDVTYKV 159 (746)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~nvs~~~ 159 (746)
.....|.++.|....+..+. .|...+..... .+..++.+.++..+...+.....+.....++++||+|+|
T Consensus 251 ~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~~~~~~~~~~~~i~~~~v~f~y 330 (529)
T TIGR02857 251 FRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAGKAPVTAAPAPSLEFSGLSVAY 330 (529)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcCCCCCCCCeEEEEEEEEEC
Confidence 45556777777777665433 22222110000 000111111110000000000001111369999999999
Q ss_pred eeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCC----hhccCcEEEEe
Q 004537 160 ILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS----KSLKSKIGFVT 235 (746)
Q Consensus 160 ~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~----~~~~~~i~yv~ 235 (746)
+ ..++++|+|+|++++|||.++|+||||||||||+|+|+|. ++ +.+|+|.+||+++. +.+|++++||+
T Consensus 331 ~------~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~-~~-~~~G~I~~~g~~i~~~~~~~lr~~i~~v~ 402 (529)
T TIGR02857 331 P------GRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGF-VD-PTEGSIAVNGVPLADADADSWRDQIAWVP 402 (529)
T ss_pred C------CCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcC-CC-CCCcEEEECCEehhhCCHHHHHhheEEEc
Confidence 3 2235799999999999999999999999999999999984 43 45899999999875 35788999999
Q ss_pred cCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcC-------CCccccccccCccccCCCHHHHHHHHHHH
Q 004537 236 QDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG-------LERCQDTMIGGSFVRGVSGGERKRVCIGN 308 (746)
Q Consensus 236 Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~~~vg~~~~~~LSGGerqRv~IA~ 308 (746)
|++.+|+ .|++||+.++.. ..+++ +++++++..+ +++..||.+|+. ...||||||||++|||
T Consensus 403 Q~~~lf~-~ti~~Ni~~~~~-----~~~~~----~i~~a~~~~~l~~~i~~lp~Gldt~v~e~-g~~LSgGq~qri~laR 471 (529)
T TIGR02857 403 QHPFLFA-GTIAENIRLARP-----DASDA----EIRRALERAGLDEFVAALPQGLDTLIGEG-GAGLSGGQAQRLALAR 471 (529)
T ss_pred CCCcccC-cCHHHHHhccCC-----CCCHH----HHHHHHHHcCcHHHHHhCcccccchhccc-cccCCHHHHHHHHHHH
Confidence 9999997 599999998631 12222 2333333333 356778988864 4569999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEE
Q 004537 309 EIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL 369 (746)
Q Consensus 309 aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL 369 (746)
||+++|++++||||||+||+.+++.+.+.|+++. +++|+|+++|+++. .+.||+|++|
T Consensus 472 al~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~--~~~~d~i~~l 529 (529)
T TIGR02857 472 AFLRDAPLLLLDEPTAHLDAETEALVTEALRALA-QGRTVLLVTHRLAL--AERADRIVVL 529 (529)
T ss_pred HHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhc-CCCEEEEEecCHHH--HHhCCEEEeC
Confidence 9999999999999999999999999999999975 48999999999853 5789999985
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-41 Score=355.93 Aligned_cols=222 Identities=28% Similarity=0.449 Sum_probs=183.7
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCC-CCC--CccEEEECCEeCCh
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLM-EPT--VGGSITYNDHPYSK 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~-~~~--~~G~I~~~G~~~~~ 225 (746)
.++++||+++| +++.+|+|+|+++++||+++|+||||||||||+++|+|... .|. .+|+|.++|+++..
T Consensus 5 ~l~~~~l~~~~--------~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~ 76 (252)
T PRK14239 5 ILQVSDLSVYY--------NKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYS 76 (252)
T ss_pred eEEEEeeEEEE--------CCeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcC
Confidence 58999999998 24579999999999999999999999999999999999532 231 48999999998731
Q ss_pred ------hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHH
Q 004537 226 ------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (746)
Q Consensus 226 ------~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGG 299 (746)
.+++.++||+|++.+++ +||+||+.++..... ........+++.++++.+++.+...+.. +..++.||||
T Consensus 77 ~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G 152 (252)
T PRK14239 77 PRTDTVDLRKEIGMVFQQPNPFP-MSIYENVVYGLRLKG--IKDKQVLDEAVEKSLKGASIWDEVKDRL-HDSALGLSGG 152 (252)
T ss_pred cccchHhhhhcEEEEecCCccCc-CcHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCchhHHHHH-hcCcccCCHH
Confidence 34677999999999887 799999998754321 1122334566788899998753211111 2345789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecC
Q 004537 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (746)
Q Consensus 300 erqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (746)
|||||+|||+|+.+|++|||||||+|||+.++..+.+.|+++.+ ++|||++||++. ++.+.||++++|++|++++.|+
T Consensus 153 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~g~ 230 (252)
T PRK14239 153 QQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD-DYTMLLVTRSMQ-QASRISDRTGFFLDGDLIEYND 230 (252)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh-CCeEEEEECCHH-HHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999865 689999999975 5778899999999999999999
Q ss_pred HHHHH
Q 004537 380 ASEAM 384 (746)
Q Consensus 380 ~~~~~ 384 (746)
++++.
T Consensus 231 ~~~~~ 235 (252)
T PRK14239 231 TKQMF 235 (252)
T ss_pred HHHHH
Confidence 98874
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-41 Score=351.62 Aligned_cols=216 Identities=28% Similarity=0.473 Sum_probs=187.2
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh--hc
Q 004537 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SL 227 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--~~ 227 (746)
|+++|++++| +++.+|+|+|+++++||+++|+||||||||||+++|+|.. ++.+|+|.++|+++.. ..
T Consensus 1 l~~~~l~~~~--------~~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~--~~~~G~i~~~g~~~~~~~~~ 70 (232)
T cd03300 1 IELENVSKFY--------GGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFE--TPTSGEILLDGKDITNLPPH 70 (232)
T ss_pred CEEEeEEEEe--------CCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCC--CCCceEEEECCEEcCcCChh
Confidence 4689999998 3457999999999999999999999999999999999954 3458999999998753 23
Q ss_pred cCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHH
Q 004537 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (746)
Q Consensus 228 ~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA 307 (746)
++.++|++|++.+++.+|++||+.+....+. .......++++++++.+||.+..++. +..||||||||++||
T Consensus 71 ~~~i~~~~q~~~~~~~~t~~~nl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~lS~G~~qrl~la 142 (232)
T cd03300 71 KRPVNTVFQNYALFPHLTVFENIAFGLRLKK---LPKAEIKERVAEALDLVQLEGYANRK-----PSQLSGGQQQRVAIA 142 (232)
T ss_pred hcceEEEecccccCCCCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchhhcCC-----hhhCCHHHHHHHHHH
Confidence 5679999999999988999999998754331 23344456788899999998777654 468999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHH
Q 004537 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (746)
Q Consensus 308 ~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (746)
|+|+.+|+++||||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.+.||++++|++|++++.|+++++.
T Consensus 143 ral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~-~~~~~~d~i~~l~~G~~~~~~~~~~~~ 219 (232)
T cd03300 143 RALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQE-EALTMSDRIAVMNKGKIQQIGTPEEIY 219 (232)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEEECCEEEecCCHHHHH
Confidence 9999999999999999999999999999999999865 899999999975 477889999999999999999987764
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-42 Score=357.12 Aligned_cols=204 Identities=29% Similarity=0.492 Sum_probs=186.4
Q ss_pred cceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh-------h-ccCcEEEEecCCcCCC
Q 004537 171 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-------S-LKSKIGFVTQDDVLFP 242 (746)
Q Consensus 171 ~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~-------~-~~~~i~yv~Q~~~l~~ 242 (746)
.-++|+|++|+.||+..|||-||||||||+++|.+ +.+| +.|+|+++|.++.+ + .++++++|||...|+|
T Consensus 42 vGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~Nr-Liep-t~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlP 119 (386)
T COG4175 42 VGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNR-LIEP-TRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLP 119 (386)
T ss_pred EeeccceeeecCCeEEEEEecCCCCHHHHHHHHhc-cCCC-CCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhcccc
Confidence 46899999999999999999999999999999995 5554 58999999998742 2 3567999999999999
Q ss_pred CCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 004537 243 HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEP 322 (746)
Q Consensus 243 ~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~illLDEP 322 (746)
+.||.||..|+...+ .++++++++++.+.|+.+||..+.+. ++++|||||||||.|||||+.+|+||++|||
T Consensus 120 hrtVl~Nv~fGLev~---Gv~~~er~~~a~~~l~~VgL~~~~~~-----yp~eLSGGMqQRVGLARAla~~~~IlLMDEa 191 (386)
T COG4175 120 HRTVLENVAFGLEVQ---GVPKAEREERALEALELVGLEGYADK-----YPNELSGGMQQRVGLARALANDPDILLMDEA 191 (386)
T ss_pred chhHhhhhhcceeec---CCCHHHHHHHHHHHHHHcCchhhhhc-----CcccccchHHHHHHHHHHHccCCCEEEecCc
Confidence 999999999998765 57899999999999999999998875 5689999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHHH
Q 004537 323 TSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (746)
Q Consensus 323 TsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 385 (746)
+|+|||--+.++.+.|.+|.++ +||||++|||+. |.+++-|||.+|++|+|+..|+|+|++.
T Consensus 192 FSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLd-EAlriG~rIaimkdG~ivQ~Gtp~eIl~ 254 (386)
T COG4175 192 FSALDPLIRTEMQDELLELQAKLKKTIVFITHDLD-EALRIGDRIAIMKDGEIVQVGTPEEILL 254 (386)
T ss_pred hhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHH-HHHhccceEEEecCCeEEEeCCHHHHHc
Confidence 9999999999999999999765 899999999976 5789999999999999999999999873
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-41 Score=347.90 Aligned_cols=208 Identities=25% Similarity=0.444 Sum_probs=175.8
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh--hc
Q 004537 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SL 227 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--~~ 227 (746)
++++|++++|. ++. .|+|+++++||+++|+||||||||||+++|+|.. ++.+|+|.++|.++.. ..
T Consensus 1 i~~~~l~~~~~--------~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~--~~~~G~i~~~g~~~~~~~~~ 68 (211)
T cd03298 1 VRLDKIRFSYG--------EQP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFE--TPQSGRVLINGVDVTAAPPA 68 (211)
T ss_pred CEEEeEEEEeC--------CEe--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC--CCCCceEEECCEEcCcCCHh
Confidence 46899999882 222 3999999999999999999999999999999964 3568999999998743 23
Q ss_pred cCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHH
Q 004537 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (746)
Q Consensus 228 ~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA 307 (746)
++.++|++|++.+++.+||+||+.++..... .. ....++++.++++.+||.+..++. +..||||||||++||
T Consensus 69 ~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~-~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~ia 140 (211)
T cd03298 69 DRPVSMLFQENNLFAHLTVEQNVGLGLSPGL--KL-TAEDRQAIEVALARVGLAGLEKRL-----PGELSGGERQRVALA 140 (211)
T ss_pred HccEEEEecccccCCCCcHHHHHhccccccc--Cc-cHHHHHHHHHHHHHcCCHHHHhCC-----cccCCHHHHHHHHHH
Confidence 5679999999999998999999987643211 11 223455788999999998766654 468999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEec
Q 004537 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (746)
Q Consensus 308 ~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G 378 (746)
|+|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+.||++++|++|++++.|
T Consensus 141 ~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 141 RVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPE-DAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHhhhCEEEEEECCEEeecC
Confidence 9999999999999999999999999999999999754 899999999975 466889999999999998764
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=354.67 Aligned_cols=212 Identities=31% Similarity=0.487 Sum_probs=181.9
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (746)
.++++|++++| +++.+|+|+||++++||+++|+||||||||||+++|+|.. ++.+|+|.++|.++..
T Consensus 3 ~l~~~~l~~~~--------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~--~p~~G~i~~~g~~i~~~~~ 72 (241)
T PRK14250 3 EIEFKEVSYSS--------FGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLI--DPTEGSILIDGVDIKTIDV 72 (241)
T ss_pred eEEEEeEEEEe--------CCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC--CCCCcEEEECCEEhhhcCh
Confidence 48999999998 2456999999999999999999999999999999999954 3468999999998742
Q ss_pred -hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCC-ccccccccCccccCCCHHHHHH
Q 004537 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVSGGERKR 303 (746)
Q Consensus 226 -~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSGGerqR 303 (746)
..++.++|++|++.+++ .||+||+.+....+ . ...+++.++++.++|+ +..++ .+..||||||||
T Consensus 73 ~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~---~----~~~~~~~~~l~~~~l~~~~~~~-----~~~~LS~G~~qr 139 (241)
T PRK14250 73 IDLRRKIGMVFQQPHLFE-GTVKDNIEYGPMLK---G----EKNVDVEYYLSIVGLNKEYATR-----DVKNLSGGEAQR 139 (241)
T ss_pred HHhhhcEEEEecCchhch-hhHHHHHhcchhhc---C----cHHHHHHHHHHHcCCCHHHhhC-----CcccCCHHHHHH
Confidence 34678999999999887 69999998754321 1 1234677899999996 34443 456899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHH
Q 004537 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (746)
Q Consensus 304 v~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~ 382 (746)
++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+.||++++|++|++++.|++++
T Consensus 140 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~ 218 (241)
T PRK14250 140 VSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNME-QAKRIGDYTAFLNKGILVEYAKTYD 218 (241)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH-HHHHhCCEEEEEeCCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999764 899999999975 4678899999999999999999988
Q ss_pred HH
Q 004537 383 AM 384 (746)
Q Consensus 383 ~~ 384 (746)
+.
T Consensus 219 ~~ 220 (241)
T PRK14250 219 FF 220 (241)
T ss_pred Hh
Confidence 64
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-41 Score=366.16 Aligned_cols=224 Identities=21% Similarity=0.368 Sum_probs=188.0
Q ss_pred ceEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCC---CCCccEEEECCEeCC
Q 004537 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME---PTVGGSITYNDHPYS 224 (746)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~---~~~~G~I~~~G~~~~ 224 (746)
..|+++|++++|. .+.+.+|+|+||+|++||+++|+||||||||||+++|+|.... .+.+|+|.+||+++.
T Consensus 79 ~~i~~~nls~~y~------~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~ 152 (329)
T PRK14257 79 NVFEIRNFNFWYM------NRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTR 152 (329)
T ss_pred ceEEEEeeEEEec------CCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcc
Confidence 4699999999983 1335699999999999999999999999999999999985421 135899999999985
Q ss_pred ------hhccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCc-HHHHHHHHHHHHHHcCCCccccccccCccccCCC
Q 004537 225 ------KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLT-KQQKEKRAIDVINELGLERCQDTMIGGSFVRGVS 297 (746)
Q Consensus 225 ------~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~-~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS 297 (746)
..+++.++||||++.+|+ .|++||+.|+.... ..+ ++..++.+.+.++.++|.+..++.++ .....||
T Consensus 153 ~~~~~~~~lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~~---~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~-~~~~~LS 227 (329)
T PRK14257 153 SKKISSLELRTRIGMVFQKPTPFE-MSIFDNVAYGPRNN---GINDRKILEKIVEKSLKSAALWDEVKDDLD-KAGNALS 227 (329)
T ss_pred ccccchHhhhccEEEEecCCccCC-CcHHHHHHhHHHhc---CCChHHHHHHHHHHHHHHcCCcchhhhhhh-CCcccCC
Confidence 245778999999999996 79999999875321 122 23334557788899888655555554 3467899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEe
Q 004537 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (746)
Q Consensus 298 GGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~ 377 (746)
||||||++|||||+.+|+||||||||+|||+.+...+.+.|+++.+ ++|||++||++. .+.+.||+|++|++|++++.
T Consensus 228 gGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~-~~Tii~iTH~l~-~i~~~~Driivl~~G~i~e~ 305 (329)
T PRK14257 228 GGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK-KYSIIIVTHSMA-QAQRISDETVFFYQGWIEEA 305 (329)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999876 799999999975 46678999999999999999
Q ss_pred cCHHHHH
Q 004537 378 GKASEAM 384 (746)
Q Consensus 378 G~~~~~~ 384 (746)
|+++++.
T Consensus 306 g~~~~l~ 312 (329)
T PRK14257 306 GETKTIF 312 (329)
T ss_pred CCHHHHh
Confidence 9999985
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-41 Score=353.97 Aligned_cols=222 Identities=24% Similarity=0.433 Sum_probs=183.6
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCC-C--CCccEEEECCEeCCh
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-P--TVGGSITYNDHPYSK 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~-~--~~~G~I~~~G~~~~~ 225 (746)
.|+++||++.| +++++|+|+||+|++||+++|+||||||||||+++|+|.... + +.+|+|.++|+++..
T Consensus 3 ~l~~~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~ 74 (250)
T PRK14240 3 KISVKDLDLFY--------GDFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYK 74 (250)
T ss_pred eEEEEEEEEEE--------CCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccc
Confidence 48999999998 235799999999999999999999999999999999996432 2 158999999998742
Q ss_pred ------hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHH
Q 004537 226 ------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (746)
Q Consensus 226 ------~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGG 299 (746)
..++.++|++|++.+++ +|++||+.++..... ....+..+++++++++.+++.+...... +..+..||||
T Consensus 75 ~~~~~~~~~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~~LS~G 150 (250)
T PRK14240 75 SDIDVNQLRKRVGMVFQQPNPFP-MSIYDNVAYGPRTHG--IKDKKKLDEIVEKSLKGAALWDEVKDRL-KKSALGLSGG 150 (250)
T ss_pred cccchHHHhccEEEEecCCccCc-ccHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhHHHH-hcCCCCCCHH
Confidence 34677999999999887 899999998754321 1123344567788888888753211111 2345689999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecC
Q 004537 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (746)
Q Consensus 300 erqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (746)
||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||++||++. .+.+.||++++|++|++++.|+
T Consensus 151 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~v~~l~~G~i~~~~~ 228 (250)
T PRK14240 151 QQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKK-DYTIVIVTHNMQ-QASRISDKTAFFLNGEIVEFGD 228 (250)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEEeCHH-HHHhhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999964 899999999975 5778899999999999999999
Q ss_pred HHHHH
Q 004537 380 ASEAM 384 (746)
Q Consensus 380 ~~~~~ 384 (746)
++++.
T Consensus 229 ~~~~~ 233 (250)
T PRK14240 229 TVDLF 233 (250)
T ss_pred HHHHH
Confidence 88764
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-41 Score=362.24 Aligned_cols=221 Identities=24% Similarity=0.398 Sum_probs=183.1
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCC----
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---- 224 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~---- 224 (746)
.|+++||+++|..+. ...+.+|+|+||++++||+++|+||||||||||+|+|+|.. ++.+|+|.++|.++.
T Consensus 6 ~l~i~nl~~~~~~~~---~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~--~p~~G~i~~~g~~i~~~~~ 80 (289)
T PRK13645 6 DIILDNVSYTYAKKT---PFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLI--ISETGQTIVGDYAIPANLK 80 (289)
T ss_pred eEEEEEEEEEeCCCC---ccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCC--CCCCceEEECCEEcccccc
Confidence 589999999983110 00135999999999999999999999999999999999964 356899999998863
Q ss_pred -----hhccCcEEEEecCCc--CCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCC-ccccccccCccccCC
Q 004537 225 -----KSLKSKIGFVTQDDV--LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGV 296 (746)
Q Consensus 225 -----~~~~~~i~yv~Q~~~--l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~L 296 (746)
..+++.|+|++|++. +++ .||+||+.++.... ....+...+++.++++.++|+ +..++ .++.|
T Consensus 81 ~~~~~~~~~~~i~~v~q~~~~~~~~-~tv~enl~~~~~~~---~~~~~~~~~~~~~ll~~~~L~~~~~~~-----~~~~L 151 (289)
T PRK13645 81 KIKEVKRLRKEIGLVFQFPEYQLFQ-ETIEKDIAFGPVNL---GENKQEAYKKVPELLKLVQLPEDYVKR-----SPFEL 151 (289)
T ss_pred ccccHHHHhccEEEEEeCcchhhhh-hHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhcC-----ChhhC
Confidence 134567999999973 454 69999999875321 123444456678899999995 44554 34689
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEE
Q 004537 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLL 375 (746)
Q Consensus 297 SGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv 375 (746)
|||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++.++ |+|||++||++. ++.+.||++++|++|+++
T Consensus 152 S~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~-~~~~~~d~i~~l~~G~i~ 230 (289)
T PRK13645 152 SGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMD-QVLRIADEVIVMHEGKVI 230 (289)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999764 899999999975 577899999999999999
Q ss_pred EecCHHHHH
Q 004537 376 YFGKASEAM 384 (746)
Q Consensus 376 ~~G~~~~~~ 384 (746)
+.|+++++.
T Consensus 231 ~~g~~~~~~ 239 (289)
T PRK13645 231 SIGSPFEIF 239 (289)
T ss_pred EeCCHHHHh
Confidence 999988764
|
|
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=356.92 Aligned_cols=226 Identities=26% Similarity=0.459 Sum_probs=192.4
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCC---CCccEEEECCEeCC--
Q 004537 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP---TVGGSITYNDHPYS-- 224 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~---~~~G~I~~~G~~~~-- 224 (746)
|+++||+..|... .+...+++||||++++||++||+|.|||||||+.+.|.|.+..+ ..+|+|.++|+++.
T Consensus 2 L~v~nL~v~f~~~----~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l 77 (316)
T COG0444 2 LEVKNLSVSFPTD----AGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSL 77 (316)
T ss_pred ceEeeeEEEEecC----CccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccC
Confidence 6899999988532 23467999999999999999999999999999999999876523 25799999999763
Q ss_pred -h----hc-cCcEEEEecCC--cCCCCCCHHHHHHHHHhccCCCCC-cHHHHHHHHHHHHHHcCCCccccccccCccccC
Q 004537 225 -K----SL-KSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTL-TKQQKEKRAIDVINELGLERCQDTMIGGSFVRG 295 (746)
Q Consensus 225 -~----~~-~~~i~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~-~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~ 295 (746)
+ .+ .+.|+++|||+ .|.|.+||.+.+.-..... ... .+++..+++.++|+.+||++-.. +.+.++++
T Consensus 78 ~~~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h--~~~~~~~ea~~~a~~~L~~Vgi~~~~~--~~~~YPhe 153 (316)
T COG0444 78 SEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLH--GKGLSKKEAKERAIELLELVGIPDPER--RLKSYPHE 153 (316)
T ss_pred CHHHHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHh--hcchhhHHHHHHHHHHHHHcCCCCHHH--HHhhCCcc
Confidence 2 22 35799999997 5889999998887665432 122 45667788999999999986432 34578999
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCChHHHhccCEEEEEeCCeE
Q 004537 296 VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (746)
Q Consensus 296 LSGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~-~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~i 374 (746)
|||||||||.||.||+.+|++||.||||++||...+.+|+++|+++.+ .|.++|+||||+. .+.++||||+||..|+|
T Consensus 154 lSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~-vva~~aDri~VMYaG~i 232 (316)
T COG0444 154 LSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLG-VVAEIADRVAVMYAGRI 232 (316)
T ss_pred cCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcceEEEEECcEE
Confidence 999999999999999999999999999999999999999999999986 5999999999986 47899999999999999
Q ss_pred EEecCHHHHH
Q 004537 375 LYFGKASEAM 384 (746)
Q Consensus 375 v~~G~~~~~~ 384 (746)
|+.|+.+++.
T Consensus 233 VE~g~~~~i~ 242 (316)
T COG0444 233 VEEGPVEEIF 242 (316)
T ss_pred EEeCCHHHHh
Confidence 9999999875
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-41 Score=354.91 Aligned_cols=223 Identities=23% Similarity=0.392 Sum_probs=183.3
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCC-C--CCccEEEECCEeCCh
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-P--TVGGSITYNDHPYSK 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~-~--~~~G~I~~~G~~~~~ 225 (746)
.-+++||+++| +++++|+|+||+|++||+++|+||||||||||+++|+|.... + +.+|+|.++|+++..
T Consensus 5 ~~~~~~l~~~~--------~~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~ 76 (251)
T PRK14244 5 HASVKNLNLWY--------GSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYS 76 (251)
T ss_pred EEEeeeEEEEE--------CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHh
Confidence 35789999988 245799999999999999999999999999999999996431 2 358999999988642
Q ss_pred ------hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHH
Q 004537 226 ------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (746)
Q Consensus 226 ------~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGG 299 (746)
..++.++|++|++.+++. ||+||+.+....+. ........++.+.++++.+||.+...+.+ +..++.||||
T Consensus 77 ~~~~~~~~~~~i~~v~q~~~~~~~-tv~~ni~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G 153 (251)
T PRK14244 77 VDTNVVLLRAKVGMVFQKPNPFPK-SIYDNVAYGPKLHG-LAKNKKKLDEIVEKSLTSVGLWEELGDRL-KDSAFELSGG 153 (251)
T ss_pred cccchHHHhhhEEEEecCcccccC-CHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHcCCCchhhhHh-hcChhhCCHH
Confidence 246789999999998885 99999998743321 11122334456788999999965322211 2345689999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecC
Q 004537 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (746)
Q Consensus 300 erqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (746)
||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++.+ |+|||++||++. ++.+.||++++|++|++++.|+
T Consensus 154 q~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~~-~~~~~~d~i~~l~~G~i~~~~~ 231 (251)
T PRK14244 154 QQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKK-NFTIIVVTHSMK-QAKKVSDRVAFFQSGRIVEYNT 231 (251)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHhhcCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999864 899999999975 5678899999999999999999
Q ss_pred HHHHH
Q 004537 380 ASEAM 384 (746)
Q Consensus 380 ~~~~~ 384 (746)
++++.
T Consensus 232 ~~~~~ 236 (251)
T PRK14244 232 TQEIF 236 (251)
T ss_pred HHHHh
Confidence 88764
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-41 Score=358.38 Aligned_cols=219 Identities=24% Similarity=0.424 Sum_probs=186.5
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (746)
.|+++||+++|.. ...+.+|+|+|+++++||+++|+|+||||||||+++|+|.. ++.+|+|.++|+++..
T Consensus 4 ~l~~~~l~~~~~~-----~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~--~~~~G~i~~~g~~i~~~~~ 76 (277)
T PRK13642 4 ILEVENLVFKYEK-----ESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLF--EEFEGKVKIDGELLTAENV 76 (277)
T ss_pred eEEEEEEEEEcCC-----CCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC--CCCCCEEEECCEECCcCCH
Confidence 5899999999831 12346999999999999999999999999999999999964 3568999999998752
Q ss_pred -hccCcEEEEecCCc-CCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHH
Q 004537 226 -SLKSKIGFVTQDDV-LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (746)
Q Consensus 226 -~~~~~i~yv~Q~~~-l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqR 303 (746)
..++.++|++|++. .++..||.||+.++.... ..++++..++++++++.+||.+..++. +..||||||||
T Consensus 77 ~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qr 148 (277)
T PRK13642 77 WNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQ---GIPREEMIKRVDEALLAVNMLDFKTRE-----PARLSGGQKQR 148 (277)
T ss_pred HHHhcceEEEEECHHHhhccCCHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHhHhhCC-----cccCCHHHHHH
Confidence 35678999999974 566689999998865421 233445556788999999998766653 46899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHH
Q 004537 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (746)
Q Consensus 304 v~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~ 382 (746)
++|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++.. + ..||++++|++|++++.|++++
T Consensus 149 v~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~-~-~~~d~i~~l~~G~i~~~g~~~~ 226 (277)
T PRK13642 149 VAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDE-A-ASSDRILVMKAGEIIKEAAPSE 226 (277)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-H-HhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999875 8999999999764 4 4699999999999999999988
Q ss_pred HH
Q 004537 383 AM 384 (746)
Q Consensus 383 ~~ 384 (746)
+.
T Consensus 227 ~~ 228 (277)
T PRK13642 227 LF 228 (277)
T ss_pred Hh
Confidence 65
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-41 Score=349.45 Aligned_cols=213 Identities=31% Similarity=0.478 Sum_probs=179.0
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (746)
.|+++||+++|..+ ...+.+|+|+|+++++||+++|+||||||||||+++|+|.. ++.+|+|.++|+++..
T Consensus 6 ~l~~~~l~~~~~~~----~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~--~p~~G~i~~~g~~~~~~~~ 79 (228)
T PRK10584 6 IVEVHHLKKSVGQG----EHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLD--DGSSGEVSLVGQPLHQMDE 79 (228)
T ss_pred eEEEeeeEEEccCC----CcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCC--CCCCeeEEECCEEcccCCH
Confidence 59999999998310 01135999999999999999999999999999999999954 3468999999998742
Q ss_pred -h---c-cCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHH
Q 004537 226 -S---L-KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGE 300 (746)
Q Consensus 226 -~---~-~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGe 300 (746)
. . ++.++|++|++.+++.+||.||+.+....+ .....+..+++.++++.++|.+..+.. +..|||||
T Consensus 80 ~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~Ge 151 (228)
T PRK10584 80 EARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLR---GESSRQSRNGAKALLEQLGLGKRLDHL-----PAQLSGGE 151 (228)
T ss_pred HHHHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCC-----hhhCCHHH
Confidence 1 2 257999999999999899999998865332 123344567789999999998766654 46899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEe
Q 004537 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (746)
Q Consensus 301 rqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~ 377 (746)
|||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++. .+ +.||++++|++|++++.
T Consensus 152 ~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~-~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 152 QQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQ-LA-ARCDRRLRLVNGQLQEE 227 (228)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEECCEEEec
Confidence 99999999999999999999999999999999999999999764 899999999976 34 56999999999999753
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-41 Score=373.16 Aligned_cols=206 Identities=24% Similarity=0.409 Sum_probs=180.2
Q ss_pred ccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCE----eCCh----h---c-cCcEEEEe
Q 004537 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDH----PYSK----S---L-KSKIGFVT 235 (746)
Q Consensus 168 ~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~----~~~~----~---~-~~~i~yv~ 235 (746)
+...+|+|+||+|++||+++|+||||||||||+++|+|.. . +.+|+|+++|+ ++.. . . +++++||+
T Consensus 35 g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~-~-p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vf 112 (382)
T TIGR03415 35 GLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLN-P-VSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVF 112 (382)
T ss_pred CCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-C-CCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEE
Confidence 3457899999999999999999999999999999999954 3 46899999996 3321 1 2 25799999
Q ss_pred cCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHHHHHhhCCC
Q 004537 236 QDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPS 315 (746)
Q Consensus 236 Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~ 315 (746)
|++.++|.+||+||+.++...+ ..++++.++++.++++.+||.+..+.. +.+|||||||||+|||||+.+|+
T Consensus 113 Q~~~l~p~~Tv~eNi~~~~~~~---g~~~~~~~~~a~e~le~vgL~~~~~~~-----~~~LSgGq~QRV~LARALa~~P~ 184 (382)
T TIGR03415 113 QKFALMPWLTVEENVAFGLEMQ---GMPEAERRKRVDEQLELVGLAQWADKK-----PGELSGGMQQRVGLARAFAMDAD 184 (382)
T ss_pred CCCcCCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhcCC-----hhhCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999986432 234566677889999999998877654 46899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHH
Q 004537 316 LLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (746)
Q Consensus 316 illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (746)
||||||||+|||+.++.++.+.|+++.++ |+|||++||++. ++.++||+|++|++|+++..|++++++
T Consensus 185 ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~-e~~~l~DrI~vl~~G~iv~~g~~~ei~ 253 (382)
T TIGR03415 185 ILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLD-EALKIGNRIAIMEGGRIIQHGTPEEIV 253 (382)
T ss_pred EEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 99999999999999999999999999875 899999999975 577999999999999999999998875
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-41 Score=350.76 Aligned_cols=214 Identities=26% Similarity=0.456 Sum_probs=182.0
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh--hc
Q 004537 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SL 227 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--~~ 227 (746)
++++||+++|. ++. .|+||++++||+++|+||||||||||+++|+|.. ++.+|+|.++|+++.. ..
T Consensus 2 l~~~~l~~~~~--------~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~--~~~~G~i~~~g~~~~~~~~~ 69 (232)
T PRK10771 2 LKLTDITWLYH--------HLP--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFL--TPASGSLTLNGQDHTTTPPS 69 (232)
T ss_pred eEEEEEEEEEC--------Ccc--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC--CCCCceEEECCeecCcCChh
Confidence 78999999982 222 3999999999999999999999999999999954 3568999999998753 23
Q ss_pred cCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHH
Q 004537 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (746)
Q Consensus 228 ~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA 307 (746)
++.++|++|++.+++.+|+.||+.+...... .. .+..++++.++++.+||++..++. ++.||||||||++||
T Consensus 70 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~--~~-~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~la 141 (232)
T PRK10771 70 RRPVSMLFQENNLFSHLTVAQNIGLGLNPGL--KL-NAAQREKLHAIARQMGIEDLLARL-----PGQLSGGQRQRVALA 141 (232)
T ss_pred hccEEEEecccccccCCcHHHHHhccccccc--CC-CHHHHHHHHHHHHHcCcHHHHhCC-----cccCCHHHHHHHHHH
Confidence 4679999999999998999999987532111 11 223456788999999998776654 468999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHH
Q 004537 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (746)
Q Consensus 308 ~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (746)
|+|+.+|+++||||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.+.||++++|++|++++.|+++++.
T Consensus 142 ral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~g~i~~~g~~~~~~ 218 (232)
T PRK10771 142 RCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLE-DAARIAPRSLVVADGRIAWDGPTDELL 218 (232)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999999999999999998764 899999999975 467889999999999999999988764
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-41 Score=353.05 Aligned_cols=222 Identities=23% Similarity=0.394 Sum_probs=184.4
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCC-C--CCccEEEECCEeCCh
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-P--TVGGSITYNDHPYSK 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~-~--~~~G~I~~~G~~~~~ 225 (746)
.++++|++++| +++.+|+|+|++|++||+++|+||||||||||+++|+|.... + +.+|+|.++|.++..
T Consensus 4 ~l~~~~l~~~~--------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~ 75 (251)
T PRK14270 4 KMESKNLNLWY--------GEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYD 75 (251)
T ss_pred EEEEEEeEEEE--------CCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEeccc
Confidence 68999999998 235699999999999999999999999999999999996431 1 258999999998742
Q ss_pred ------hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHH
Q 004537 226 ------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (746)
Q Consensus 226 ------~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGG 299 (746)
..++.++|++|++.+++ +|++||+.+...... .....+..++++++++.++|.+...... +..++.||||
T Consensus 76 ~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G 151 (251)
T PRK14270 76 KDVDVVELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHG--IKDKKELDKIVEWALKKAALWDEVKDDL-KKSALKLSGG 151 (251)
T ss_pred ccccHHHHHhheEEEecCCCcCC-CcHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHcCCchhhhhHh-hCCcccCCHH
Confidence 24677999999999997 899999998754321 1123344566788999998853211111 2345789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecC
Q 004537 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (746)
Q Consensus 300 erqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (746)
||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||++||++. ++.+.||++++|++|++++.|+
T Consensus 152 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~~~d~v~~l~~G~i~~~~~ 229 (251)
T PRK14270 152 QQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK-EYTIVIVTHNMQ-QASRVSDYTAFFLMGDLIEFNK 229 (251)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEEcCHH-HHHHhcCEEEEEECCeEEEeCC
Confidence 99999999999999999999999999999999999999999876 689999999975 5778899999999999999999
Q ss_pred HHHHH
Q 004537 380 ASEAM 384 (746)
Q Consensus 380 ~~~~~ 384 (746)
++++.
T Consensus 230 ~~~~~ 234 (251)
T PRK14270 230 TEKIF 234 (251)
T ss_pred HHHHh
Confidence 98864
|
|
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-41 Score=353.00 Aligned_cols=223 Identities=25% Similarity=0.378 Sum_probs=183.1
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCC---CccEEEECCEeCCh
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPT---VGGSITYNDHPYSK 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~---~~G~I~~~G~~~~~ 225 (746)
.++++||+++| +++.+|+|+||+|++||+++|+||||||||||+|+|+|.....+ .+|+|.++|.++..
T Consensus 4 ~l~~~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~ 75 (252)
T PRK14272 4 LLSAQDVNIYY--------GDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYG 75 (252)
T ss_pred EEEEeeeEEEE--------CCEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEccc
Confidence 58999999998 24579999999999999999999999999999999999653211 37999999998742
Q ss_pred ------hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHH
Q 004537 226 ------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (746)
Q Consensus 226 ------~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGG 299 (746)
..++.++|++|++.+++.+|+.||+.++..... ...+++..+.+++.++.+++.+..... .+..++.||||
T Consensus 76 ~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~-~~~~~~~LS~G 152 (252)
T PRK14272 76 PRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAG--IRDRDHLMEVAERSLRGAALWDEVKDR-LKTPATGLSGG 152 (252)
T ss_pred CccCHHHhhceeEEEeccCccCcCCCHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCcchhhhhh-hcCCcccCCHH
Confidence 345679999999999998999999987653221 112333455667777777664211111 12345689999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecC
Q 004537 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (746)
Q Consensus 300 erqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (746)
||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++. .+.+.||++++|++|++++.|+
T Consensus 153 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~ 230 (252)
T PRK14272 153 QQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKK-VTTIIIVTHNMH-QAARVSDTTSFFLVGDLVEHGP 230 (252)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999865 799999999975 5777899999999999999999
Q ss_pred HHHHH
Q 004537 380 ASEAM 384 (746)
Q Consensus 380 ~~~~~ 384 (746)
++++.
T Consensus 231 ~~~~~ 235 (252)
T PRK14272 231 TDQLF 235 (252)
T ss_pred HHHHH
Confidence 98874
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-43 Score=442.49 Aligned_cols=350 Identities=21% Similarity=0.265 Sum_probs=233.8
Q ss_pred hHHHHHHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeeccccccceecchhchhh
Q 004537 10 LARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSGA 89 (746)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 89 (746)
..++.++..++..+.++|++++.+||++|+++..+.++|.+........+.+.....+.+.........-..+..++.|+
T Consensus 224 ~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~f~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~l~~~~G~ 303 (1466)
T PTZ00265 224 NKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSKYILKANFMESLHIGMINGFILASYAFGFWYGT 303 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHhChHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445666688999999999999999999999999999987666555544332222222211111111222344556788
Q ss_pred hhhhhc--------ccccchhhhhc--------cccc--Ch-hhhccCCCCCCCCCcccccccCCCC--CCCCCCCCCCc
Q 004537 90 ALSRAS--------SASLGLSFSFT--------GFTM--PP-DEIADSKPFSDDDIPEDIEAGTRER--PKFQTEPTLPI 148 (746)
Q Consensus 90 ~~~~~~--------~~~~~~~~~~~--------~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 148 (746)
.++..+ ..+.|.+.++. .+.. |. ..+..... +..++.+.+...+... ......+. ..
T Consensus 304 ~lv~~g~~~~~~~~~~t~g~v~~~~~~~l~~~~~l~~i~~~~~~~~~a~~-a~~ri~~ii~~~~~~~~~~~~~~~~~-~~ 381 (1466)
T PTZ00265 304 RIIISDLSNQQPNNDFHGGSVISILLGVLISMFMLTIILPNITEYMKSLE-ATNSLYEIINRKPLVENNDDGKKLKD-IK 381 (1466)
T ss_pred HHHHcCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcCCCCCCCCCCCccCCC-CC
Confidence 777664 22333222211 1100 00 00000000 0011111111110000 00000111 12
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEE-CCEeCC---
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITY-NDHPYS--- 224 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~-~G~~~~--- 224 (746)
.|+++||+|+|+. +.++++|+|+||+|++||++||+||||||||||+++|+|. ++ +.+|+|++ ||.++.
T Consensus 382 ~I~~~nVsf~Y~~-----~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl-~~-p~~G~I~i~~g~~i~~~~ 454 (1466)
T PTZ00265 382 KIQFKNVRFHYDT-----RKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERL-YD-PTEGDIIINDSHNLKDIN 454 (1466)
T ss_pred cEEEEEEEEEcCC-----CCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHh-cc-CCCCeEEEeCCcchhhCC
Confidence 6999999999931 1235799999999999999999999999999999999984 44 45899999 567764
Q ss_pred -hhccCcEEEEecCCcCCCCCCHHHHHHHHHhccC----------CC-----------------------------CC--
Q 004537 225 -KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRL----------PN-----------------------------TL-- 262 (746)
Q Consensus 225 -~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~----------~~-----------------------------~~-- 262 (746)
+.+|++||||+|++.+|+ .||+|||.++..... +. ..
T Consensus 455 ~~~lr~~Ig~V~Q~~~LF~-~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 (1466)
T PTZ00265 455 LKWWRSKIGVVSQDPLLFS-NSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNE 533 (1466)
T ss_pred HHHHHHhccEecccccchh-ccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhh
Confidence 246788999999999997 599999999742100 00 00
Q ss_pred -------cHHHHHHHHHHHHHHcC-------CCccccccccCccccCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 004537 263 -------TKQQKEKRAIDVINELG-------LERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDS 328 (746)
Q Consensus 263 -------~~~~~~~~v~~~l~~lg-------L~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~illLDEPTsgLD~ 328 (746)
.....++.+.++++.++ |++..||.+|.. ...||||||||++|||||+++|+|||||||||+||+
T Consensus 534 ~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~-g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~ 612 (1466)
T PTZ00265 534 LIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSN-ASKLSGGQKQRISIARAIIRNPKILILDEATSSLDN 612 (1466)
T ss_pred hhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCC-CCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCH
Confidence 00011234556655554 456678888754 567999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH-CCCEEEEEecCCChHHHhccCEEEEEeCC
Q 004537 329 TTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKG 372 (746)
Q Consensus 329 ~~~~~i~~~L~~l~~-~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G 372 (746)
.++..+.+.|+++.+ +|+|+|+++|+++. .+.||+|++|++|
T Consensus 613 ~se~~i~~~L~~~~~~~g~TvIiIsHrls~--i~~aD~Iivl~~g 655 (1466)
T PTZ00265 613 KSEYLVQKTINNLKGNENRITIIIAHRLST--IRYANTIFVLSNR 655 (1466)
T ss_pred HHHHHHHHHHHHHhhcCCCEEEEEeCCHHH--HHhCCEEEEEeCC
Confidence 999999999999975 58999999999864 4789999999986
|
|
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-41 Score=352.70 Aligned_cols=222 Identities=24% Similarity=0.444 Sum_probs=184.7
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCC-C--CCccEEEECCEeCCh
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-P--TVGGSITYNDHPYSK 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~-~--~~~G~I~~~G~~~~~ 225 (746)
.|+++||++.| +++++|+|+||++++||+++|+||||||||||+++|+|.... + +.+|+|.++|.++..
T Consensus 3 ~l~~~~l~~~~--------~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~ 74 (250)
T PRK14262 3 IIEIENFSAYY--------GEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYD 74 (250)
T ss_pred eEEEEeeEEEe--------CCceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccc
Confidence 58999999998 245799999999999999999999999999999999996432 1 258999999988742
Q ss_pred ------hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHH
Q 004537 226 ------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (746)
Q Consensus 226 ------~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGG 299 (746)
.+++.++|++|++.+++ .||+||+.+...... ...++..++.+++.++.+++.+..+.. .+..+.+||||
T Consensus 75 ~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~~~~LS~G 150 (250)
T PRK14262 75 PQLDVTEYRKKVGMVFQKPTPFP-MSIYDNVAFGPRIHG--VKSKHKLDRIVEESLKKAALWDEVKSE-LNKPGTRLSGG 150 (250)
T ss_pred chhhHHHhhhhEEEEecCCccCc-ccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCCchhHHH-HhCChhhcCHH
Confidence 34677999999999987 899999998754321 112333455678889998886422111 23456789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecC
Q 004537 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (746)
Q Consensus 300 erqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (746)
||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++. .+.+.||++++|++|+++..|+
T Consensus 151 q~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tili~sH~~~-~~~~~~d~i~~l~~G~i~~~g~ 228 (250)
T PRK14262 151 QQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE-NYTIVIVTHNIG-QAIRIADYIAFMYRGELIEYGP 228 (250)
T ss_pred HHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc-CcEEEEEeCCHH-HHHHhCCEEEEEECCEEEEecC
Confidence 99999999999999999999999999999999999999999875 789999999975 4678899999999999999999
Q ss_pred HHHHH
Q 004537 380 ASEAM 384 (746)
Q Consensus 380 ~~~~~ 384 (746)
++++.
T Consensus 229 ~~~~~ 233 (250)
T PRK14262 229 TREIV 233 (250)
T ss_pred HHHHH
Confidence 98875
|
|
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-41 Score=371.89 Aligned_cols=209 Identities=29% Similarity=0.469 Sum_probs=180.6
Q ss_pred eEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh--------
Q 004537 154 DVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-------- 225 (746)
Q Consensus 154 nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~-------- 225 (746)
||+++| +++. + |+|+++++||+++|+|||||||||||++|+|.. ++.+|+|.++|+++..
T Consensus 4 ~l~~~~--------~~~~-~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~--~p~~G~I~~~g~~i~~~~~~~~~~ 71 (354)
T TIGR02142 4 RFSKRL--------GDFS-L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLT--RPDEGEIVLNGRTLFDSRKGIFLP 71 (354)
T ss_pred EEEEEE--------CCEE-E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCC--CCCceEEEECCEECccCccccccc
Confidence 788887 2233 4 999999999999999999999999999999954 3468999999998742
Q ss_pred hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHH
Q 004537 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (746)
Q Consensus 226 ~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~ 305 (746)
..++.++||+|++.+|+++||+||+.|+.... ...+.+++++++++.+||.+..++. +++|||||||||+
T Consensus 72 ~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~-----~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~LSgGqkqRva 141 (354)
T TIGR02142 72 PEKRRIGYVFQEARLFPHLSVRGNLRYGMKRA-----RPSERRISFERVIELLGIGHLLGRL-----PGRLSGGEKQRVA 141 (354)
T ss_pred hhhCCeEEEecCCccCCCCcHHHHHHHHhhcc-----ChhHHHHHHHHHHHHcCChhHhcCC-----hhhCCHHHHHHHH
Confidence 24577999999999999999999999875421 1233456788999999998777654 4689999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHH
Q 004537 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (746)
Q Consensus 306 IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (746)
|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. ++..+||++++|++|++++.|+++++.
T Consensus 142 lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 220 (354)
T TIGR02142 142 IGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQ-EVLRLADRVVVLEDGRVAAAGPIAEVW 220 (354)
T ss_pred HHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEeCCEEEEECCHHHHh
Confidence 999999999999999999999999999999999999875 899999999975 577889999999999999999998875
Q ss_pred H
Q 004537 385 A 385 (746)
Q Consensus 385 ~ 385 (746)
.
T Consensus 221 ~ 221 (354)
T TIGR02142 221 A 221 (354)
T ss_pred c
Confidence 3
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-41 Score=357.12 Aligned_cols=226 Identities=20% Similarity=0.419 Sum_probs=186.2
Q ss_pred eEEEEeEEEEEeecccc-ccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh--
Q 004537 149 YLKFTDVTYKVILKGMT-SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~-~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (746)
.|+++||+++|..+... ..+++++|+|+|+++++||+++|+||||||||||+++|+|.. ++.+|+|.++|.++..
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~--~p~~G~i~~~g~~~~~~~ 81 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMI--EPTSGELLIDDHPLHFGD 81 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCC--CCCCCEEEECCEECCCCc
Confidence 58999999998311000 012357999999999999999999999999999999999964 3468999999998752
Q ss_pred --hccCcEEEEecCCc--CCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCC-ccccccccCccccCCCHHH
Q 004537 226 --SLKSKIGFVTQDDV--LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVSGGE 300 (746)
Q Consensus 226 --~~~~~i~yv~Q~~~--l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSGGe 300 (746)
..++.++|++|++. +++.+||.|++.+...... .....+..++++++++.+||. +..+. .+..|||||
T Consensus 82 ~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~~LS~G~ 154 (267)
T PRK15112 82 YSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNT--DLEPEQREKQIIETLRQVGLLPDHASY-----YPHMLAPGQ 154 (267)
T ss_pred hhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCCChHHHhc-----CchhcCHHH
Confidence 23457999999975 6778899999988654321 123344556788999999994 44444 346899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecC
Q 004537 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (746)
Q Consensus 301 rqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (746)
||||+|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++. ++...||++++|++|++++.|+
T Consensus 155 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l~~G~i~~~~~ 233 (267)
T PRK15112 155 KQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLG-MMKHISDQVLVMHQGEVVERGS 233 (267)
T ss_pred HHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhcCEEEEEECCEEEecCC
Confidence 99999999999999999999999999999999999999999764 899999999975 5777899999999999999999
Q ss_pred HHHHH
Q 004537 380 ASEAM 384 (746)
Q Consensus 380 ~~~~~ 384 (746)
++++.
T Consensus 234 ~~~~~ 238 (267)
T PRK15112 234 TADVL 238 (267)
T ss_pred HHHHh
Confidence 88764
|
|
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-41 Score=349.43 Aligned_cols=215 Identities=30% Similarity=0.542 Sum_probs=185.5
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh--hc
Q 004537 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SL 227 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--~~ 227 (746)
|+++|+++.| ++ ++|+|+|++|++||+++|+||||||||||+++|+|.. ++.+|+|.++|.++.. ..
T Consensus 1 l~~~~l~~~~--------~~-~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~--~p~~G~v~i~g~~~~~~~~~ 69 (235)
T cd03299 1 LKVENLSKDW--------KE-FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFI--KPDSGKILLNGKDITNLPPE 69 (235)
T ss_pred CeeEeEEEEe--------CC-ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCc--CCCceEEEECCEEcCcCChh
Confidence 4689999988 22 3899999999999999999999999999999999954 3568999999998753 23
Q ss_pred cCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHH
Q 004537 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (746)
Q Consensus 228 ~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA 307 (746)
++.++|++|++.+++.+|+.||+.+..... ..+..+..+.+.++++.+||.+..++. ++.||||||||++||
T Consensus 70 ~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~la 141 (235)
T cd03299 70 KRDISYVPQNYALFPHMTVYKNIAYGLKKR---KVDKKEIERKVLEIAEMLGIDHLLNRK-----PETLSGGEQQRVAIA 141 (235)
T ss_pred HcCEEEEeecCccCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHHhcC-----cccCCHHHHHHHHHH
Confidence 568999999999998899999999875322 123444556778899999998776654 468999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHH
Q 004537 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (746)
Q Consensus 308 ~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (746)
|+|+.+|++++|||||+|||+.++..+.+.|++++++ |+|+|++||++. ++.+.||++++|++|++++.|+++++.
T Consensus 142 ral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 218 (235)
T cd03299 142 RALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFE-EAWALADKVAIMLNGKLIQVGKPEEVF 218 (235)
T ss_pred HHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 9999999999999999999999999999999998765 899999999975 467789999999999999999988764
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-41 Score=390.15 Aligned_cols=220 Identities=22% Similarity=0.334 Sum_probs=188.6
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCC-CCccEEEECCEeCCh--
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP-TVGGSITYNDHPYSK-- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~-~~~G~I~~~G~~~~~-- 225 (746)
.|+++||+++| +++.+|+|+||+|++||+++|+||||||||||+|+|+|... + +.+|+|.++|.++..
T Consensus 5 ~l~~~nl~~~~--------~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-~~~~~G~i~~~g~~~~~~~ 75 (506)
T PRK13549 5 LLEMKNITKTF--------GGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYP-HGTYEGEIIFEGEELQASN 75 (506)
T ss_pred eEEEeeeEEEe--------CCeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC-CCCCCeEEEECCEECCCCC
Confidence 59999999998 34579999999999999999999999999999999999653 3 368999999998742
Q ss_pred ---hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHH
Q 004537 226 ---SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (746)
Q Consensus 226 ---~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerq 302 (746)
..++.++||+|++.+++.+||+||+.++...+.....+.++..++++++++.+||++..+.. +++|||||||
T Consensus 76 ~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgGqkq 150 (506)
T PRK13549 76 IRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATP-----VGNLGLGQQQ 150 (506)
T ss_pred HHHHHHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccc-----hhhCCHHHHH
Confidence 13467999999999999999999999875422111123344456788999999998766654 4689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHH
Q 004537 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (746)
Q Consensus 303 Rv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~ 382 (746)
||+|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+.+.||++++|++|++++.|++++
T Consensus 151 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~ 229 (506)
T PRK13549 151 LVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLN-EVKAISDTICVIRDGRHIGTRPAAG 229 (506)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHHhcCEEEEEECCEEeeeccccc
Confidence 999999999999999999999999999999999999999877999999999975 5778899999999999999998765
Q ss_pred H
Q 004537 383 A 383 (746)
Q Consensus 383 ~ 383 (746)
+
T Consensus 230 ~ 230 (506)
T PRK13549 230 M 230 (506)
T ss_pred C
Confidence 4
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-41 Score=356.32 Aligned_cols=222 Identities=23% Similarity=0.385 Sum_probs=182.8
Q ss_pred ceEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCC---CCCccEEEECCEeCC
Q 004537 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME---PTVGGSITYNDHPYS 224 (746)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~---~~~~G~I~~~G~~~~ 224 (746)
..|+++||+++| +++.+|+|+||+|++||+++|+||||||||||+++|+|.... .+.+|+|.++|+++.
T Consensus 12 ~~l~i~nl~~~~--------~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~ 83 (269)
T PRK14259 12 IIISLQNVTISY--------GTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLY 83 (269)
T ss_pred ceEEEEeEEEEE--------CCEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcc
Confidence 469999999998 345699999999999999999999999999999999996431 046899999999863
Q ss_pred ------hhccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCH
Q 004537 225 ------KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSG 298 (746)
Q Consensus 225 ------~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSG 298 (746)
..+++.++||+|++.+++ .||+||+.+.+..+. ... ..++++.++++.+++....+.. -+..+..|||
T Consensus 84 ~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~---~~~-~~~~~~~~~l~~~~l~~~l~~~-~~~~~~~LS~ 157 (269)
T PRK14259 84 DPRVDPVEVRRRIGMVFQQPNPFP-KSIYENIAFGARING---YTG-DMDELVERSLRKAAVWDECKDK-LNESGYSLSG 157 (269)
T ss_pred cccCCHHHHhhceEEEccCCccch-hhHHHHHhhhhhhcC---CcH-HHHHHHHHHHHHhCCcchhhhh-hCCCcccCCH
Confidence 134677999999999998 499999998764321 122 2345667788888774321111 1234578999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeC-------
Q 004537 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK------- 371 (746)
Q Consensus 299 GerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~------- 371 (746)
|||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++. ++.+.||++++|++
T Consensus 158 G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~~~~~~~~~ 235 (269)
T PRK14259 158 GQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKK-NFTIVIVTHNMQ-QAVRVSDMTAFFNAEEVEGGS 235 (269)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCEEEEEecccccccc
Confidence 999999999999999999999999999999999999999999965 799999999975 57889999999996
Q ss_pred ----CeEEEecCHHHHHH
Q 004537 372 ----GSLLYFGKASEAMA 385 (746)
Q Consensus 372 ----G~iv~~G~~~~~~~ 385 (746)
|++++.|+++++..
T Consensus 236 ~g~~g~~~~~~~~~~~~~ 253 (269)
T PRK14259 236 GGKVGYLVEFNETKKIFN 253 (269)
T ss_pred ccccceEEEeCCHHHHHh
Confidence 67999999988753
|
|
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-41 Score=370.38 Aligned_cols=207 Identities=28% Similarity=0.484 Sum_probs=180.4
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh----
Q 004537 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (746)
|++ ||+++| +++. + |+|+++++||+++|+||||||||||+++|+|.. ++.+|+|.++|+++..
T Consensus 2 l~~-~l~k~~--------~~~~-~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~--~p~~G~I~~~g~~~~~~~~~ 68 (352)
T PRK11144 2 LEL-NFKQQL--------GDLC-L-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLT--RPQKGRIVLNGRVLFDAEKG 68 (352)
T ss_pred eEE-EEEEEe--------CCEE-E-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC--CCCceEEEECCEEccccccc
Confidence 667 899888 2222 3 899999999999999999999999999999964 3468999999988642
Q ss_pred ----hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHH
Q 004537 226 ----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301 (746)
Q Consensus 226 ----~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGer 301 (746)
..++.++||+|++.+|+++||+||+.|+.. ....++++++++.+||.+..+.. +++||||||
T Consensus 69 ~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~---------~~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgGq~ 134 (352)
T PRK11144 69 ICLPPEKRRIGYVFQDARLFPHYKVRGNLRYGMA---------KSMVAQFDKIVALLGIEPLLDRY-----PGSLSGGEK 134 (352)
T ss_pred cccchhhCCEEEEcCCcccCCCCcHHHHHHhhhh---------hhhHHHHHHHHHHcCCchhhhCC-----cccCCHHHH
Confidence 236789999999999999999999998642 12345688999999998776654 468999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCH
Q 004537 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380 (746)
Q Consensus 302 qRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~ 380 (746)
|||+|||||+.+|++|||||||+|||+.++..+.+.|+++.++ |+|+|++||++. ++.++||++++|++|+++..|++
T Consensus 135 qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~-~~~~~~d~i~~l~~G~i~~~g~~ 213 (352)
T PRK11144 135 QRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLD-EILRLADRVVVLEQGKVKAFGPL 213 (352)
T ss_pred HHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHH-HHHHhCCEEEEEeCCEEEEecCH
Confidence 9999999999999999999999999999999999999999875 899999999975 57889999999999999999999
Q ss_pred HHHH
Q 004537 381 SEAM 384 (746)
Q Consensus 381 ~~~~ 384 (746)
+++.
T Consensus 214 ~~i~ 217 (352)
T PRK11144 214 EEVW 217 (352)
T ss_pred HHHH
Confidence 9875
|
|
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-41 Score=355.60 Aligned_cols=222 Identities=24% Similarity=0.380 Sum_probs=184.7
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCC---CCccEEEECCEeCCh
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP---TVGGSITYNDHPYSK 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~---~~~G~I~~~G~~~~~ 225 (746)
.++++|++++| +++.+|+|+||+|++||+++|+||||||||||+++|+|....+ +.+|+|.++|.++..
T Consensus 25 ~l~~~nl~~~~--------~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~ 96 (272)
T PRK14236 25 ALEVRNLNLFY--------GDKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYD 96 (272)
T ss_pred EEEEEEEEEEE--------CCeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcc
Confidence 69999999998 2357999999999999999999999999999999999965321 368999999998742
Q ss_pred ------hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHH
Q 004537 226 ------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (746)
Q Consensus 226 ------~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGG 299 (746)
.+++.++|++|++.+++. ||+||+.+...... ...++..+++++++++.+++.+...+.. +..+..||||
T Consensus 97 ~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G 172 (272)
T PRK14236 97 KKVDVAELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQG--INNRRVLDEAVERSLRGAALWDEVKDRL-HENAFGLSGG 172 (272)
T ss_pred cccCHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCChhHHHHh-hCCcccCCHH
Confidence 346789999999999985 99999988754321 1123334456788899988864211111 2345789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecC
Q 004537 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (746)
Q Consensus 300 erqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (746)
|||||+|||+|+.+|++|||||||+|||+.++..+.+.|+++++ +.|||++||++. ++.+.||++++|++|++++.|+
T Consensus 173 q~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~~G~i~~~g~ 250 (272)
T PRK14236 173 QQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS-KYTIVIVTHNMQ-QAARVSDYTAFMYMGKLVEYGD 250 (272)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEeCCHH-HHHhhCCEEEEEECCEEEecCC
Confidence 99999999999999999999999999999999999999999976 789999999975 4678899999999999999999
Q ss_pred HHHHH
Q 004537 380 ASEAM 384 (746)
Q Consensus 380 ~~~~~ 384 (746)
++++.
T Consensus 251 ~~~~~ 255 (272)
T PRK14236 251 TDTLF 255 (272)
T ss_pred HHHHh
Confidence 88764
|
|
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-41 Score=342.61 Aligned_cols=195 Identities=37% Similarity=0.672 Sum_probs=166.2
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCC-CCccEEEECCEeCCh--
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP-TVGGSITYNDHPYSK-- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~-~~~G~I~~~G~~~~~-- 225 (746)
.+.|+||+|.|+.+ ++++.+|+|+||++++||+++|+||||||||||+++|+|..... +.+|+|.++|.++..
T Consensus 3 ~~~~~~~~~~~~~~----~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~ 78 (202)
T cd03233 3 TLSWRNISFTTGKG----RSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA 78 (202)
T ss_pred eEEEEccEEEeccC----CCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccch
Confidence 47899999999542 24568999999999999999999999999999999999964311 568999999998753
Q ss_pred -hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHH
Q 004537 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (746)
Q Consensus 226 -~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv 304 (746)
..++.++|++|++.+++.+||+||+.++.... .+ ..+..||||||||+
T Consensus 79 ~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--------------------------~~-----~~~~~LS~Ge~qrl 127 (202)
T cd03233 79 EKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK--------------------------GN-----EFVRGISGGERKRV 127 (202)
T ss_pred hhhcceEEEEecccccCCCCcHHHHHhhhhhhc--------------------------cc-----cchhhCCHHHHHHH
Confidence 35678999999999999999999998763210 12 23468999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEec
Q 004537 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (746)
Q Consensus 305 ~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G 378 (746)
+|||+|+.+|++|||||||+|||+.++..+.+.|++++++ +.|+|+++|+...++.+.||++++|++|++++.|
T Consensus 128 ~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 128 SIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred HHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 9999999999999999999999999999999999999765 6787777776555678899999999999998765
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-43 Score=442.20 Aligned_cols=217 Identities=23% Similarity=0.368 Sum_probs=183.1
Q ss_pred ceEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCC---
Q 004537 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS--- 224 (746)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~--- 224 (746)
..|+|+||+|+|. .+.+++|+|+|++|+|||.+||+|+||||||||+++|.| ++++ .+|+|.+||+|++
T Consensus 1236 g~I~f~nVsf~Y~------~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~r-l~~p-~~G~I~IDG~dI~~i~ 1307 (1622)
T PLN03130 1236 GSIKFEDVVLRYR------PELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFR-IVEL-ERGRILIDGCDISKFG 1307 (1622)
T ss_pred CcEEEEEEEEEeC------CCCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhC-cCCC-CCceEEECCEecccCC
Confidence 3699999999993 123579999999999999999999999999999999996 5554 5899999999986
Q ss_pred -hhccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHH-----HHHHHHHHHHcCCCccccccccCccccCCCH
Q 004537 225 -KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQK-----EKRAIDVINELGLERCQDTMIGGSFVRGVSG 298 (746)
Q Consensus 225 -~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~-----~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSG 298 (746)
+.+|++|++||||+.+|+. |+||||.++. ..++++. ...+++.++. +++..||.+|+. ...|||
T Consensus 1308 l~~LR~~IsiVpQdp~LF~G-TIreNLd~~~------~~tdeei~~Al~~a~l~~~I~~--lp~GLdt~Vge~-G~nLSg 1377 (1622)
T PLN03130 1308 LMDLRKVLGIIPQAPVLFSG-TVRFNLDPFN------EHNDADLWESLERAHLKDVIRR--NSLGLDAEVSEA-GENFSV 1377 (1622)
T ss_pred HHHHHhccEEECCCCccccc-cHHHHhCcCC------CCCHHHHHHHHHHcCcHHHHHh--CccccCccccCC-CCCCCH
Confidence 3678999999999999985 9999998642 1222222 1222334433 366789999864 356999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEec
Q 004537 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (746)
Q Consensus 299 GerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G 378 (746)
|||||++|||||+++|+||+||||||+||++++..|.+.|++..+ ++|+|+++|+++. ...||+|++|++|+|++.|
T Consensus 1378 GQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~-~~TvI~IAHRL~t--I~~~DrIlVLd~G~IvE~G 1454 (1622)
T PLN03130 1378 GQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK-SCTMLIIAHRLNT--IIDCDRILVLDAGRVVEFD 1454 (1622)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC-CCEEEEEeCChHH--HHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999998754 8999999999875 4569999999999999999
Q ss_pred CHHHHHH
Q 004537 379 KASEAMA 385 (746)
Q Consensus 379 ~~~~~~~ 385 (746)
+|+++++
T Consensus 1455 t~~eLl~ 1461 (1622)
T PLN03130 1455 TPENLLS 1461 (1622)
T ss_pred CHHHHHh
Confidence 9999975
|
|
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-43 Score=374.22 Aligned_cols=341 Identities=26% Similarity=0.352 Sum_probs=240.3
Q ss_pred HHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeecccccccee--------cchhchhhh
Q 004537 19 VETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLE--------LDEVSSGAA 90 (746)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~g~~ 90 (746)
.++.+.|..|+-+-|||+-|+.+.-+..+|..-+++--....| .| .|..+..-++ ..-...++.
T Consensus 119 s~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k------~~--~Sl~~Ln~gQ~~I~~~~l~~~m~~s~~ 190 (497)
T COG5265 119 SDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIK------VH--VSLLVLNFGQTAIFSTGLRVMMTMSAL 190 (497)
T ss_pred hHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHHH------HH--HHHHHHHHhhHHHHHHHHHHHHhhcHH
Confidence 4556677788888899999999988888887655432211110 00 0111100000 000112223
Q ss_pred hhhhcccccchhhhhcccccChh-----------hhccC-----CCCCCCCCcccccccCCCCCCCCCCCCCCceEEEEe
Q 004537 91 LSRASSASLGLSFSFTGFTMPPD-----------EIADS-----KPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFTD 154 (746)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~n 154 (746)
.+..+.++.|.......+..+.. ++... .++...+.+.++...+..++- .+..+..+.|+|
T Consensus 191 ~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl~~~~~v~d~pda~~L---~~~~~g~v~F~~ 267 (497)
T COG5265 191 GVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLDVEAEVSDAPDAPPL---WPVRLGAVAFIN 267 (497)
T ss_pred HHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhhccchhhccCCCCccc---cccccceEEEEE
Confidence 33344555555444433222111 11111 112222222222222211111 112345699999
Q ss_pred EEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCC----hhccCc
Q 004537 155 VTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS----KSLKSK 230 (746)
Q Consensus 155 vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~----~~~~~~ 230 (746)
|+|.|. +.+++|+++||++++|+.+|++||||+||||++++|- |++++. +|.|.+||+++. +.+|+-
T Consensus 268 V~F~y~-------~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllf-RFyD~~-sG~I~id~qdir~vtq~slR~a 338 (497)
T COG5265 268 VSFAYD-------PRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLF-RFYDVN-SGSITIDGQDIRDVTQQSLRRA 338 (497)
T ss_pred EEeecc-------ccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHH-HHhCCc-CceEEEcchhHHHhHHHHHHHH
Confidence 999983 5679999999999999999999999999999999999 677754 899999999985 357899
Q ss_pred EEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHHHHH
Q 004537 231 IGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEI 310 (746)
Q Consensus 231 i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL 310 (746)
||.||||..||.+ |...|+.|+..-...++...+.+.+++.++++.+ ++..|+.||.++.+ |||||||||+|||++
T Consensus 339 Ig~VPQDtvLFND-ti~yni~ygr~~at~eev~aaa~~aqi~~fi~~l--P~gy~t~Vgerglk-lSggekqrvaiar~i 414 (497)
T COG5265 339 IGIVPQDTVLFND-TIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSL--PEGYDTGVGERGLK-LSGGEKQRVAIARTI 414 (497)
T ss_pred hCcCcccceehhh-hHHHHHhccCccccHHHHHHHHHHhhhhHHHHhC--chhhhcccchheee-ccCchHHHHHHHHHH
Confidence 9999999999975 9999999984322111122223334556666655 89999999987665 999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHHHH
Q 004537 311 IINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAY 386 (746)
Q Consensus 311 ~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~~ 386 (746)
+++|+||+|||.||+||..++++|...|+++.+ |+|.+++.|++++ + -.+|.|+||++|+|++.|+|+++++.
T Consensus 415 lk~p~il~~deatsaldt~te~~iq~~l~~~~~-~rttlviahrlst-i-~~adeiivl~~g~i~erg~h~~ll~~ 487 (497)
T COG5265 415 LKNPPILILDEATSALDTHTEQAIQAALREVSA-GRTTLVIAHRLST-I-IDADEIIVLDNGRIVERGTHEELLAA 487 (497)
T ss_pred hcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhC-CCeEEEEeehhhh-c-cCCceEEEeeCCEEEecCcHHHHHHc
Confidence 999999999999999999999999999999874 9999999999986 3 45899999999999999999999863
|
|
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-41 Score=339.76 Aligned_cols=189 Identities=48% Similarity=0.839 Sum_probs=165.3
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCChhcc
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~ 228 (746)
.|+++|+++.|... ..++++|+|+|+++++||+++|+||||||||||+++|+|....++.+|+|.++|+++....+
T Consensus 3 ~l~~~~l~~~~~~~----~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~ 78 (192)
T cd03232 3 VLTWKNLNYTVPVK----GGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQ 78 (192)
T ss_pred EEEEeeeEEEecCC----CCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhh
Confidence 48999999998321 11357999999999999999999999999999999999964323568999999998765566
Q ss_pred CcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHHH
Q 004537 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGN 308 (746)
Q Consensus 229 ~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~ 308 (746)
+.++|++|++.+++.+||+||+.++... + .||||||||++|||
T Consensus 79 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~-------------------~------------------~LSgGe~qrv~la~ 121 (192)
T cd03232 79 RSTGYVEQQDVHSPNLTVREALRFSALL-------------------R------------------GLSVEQRKRLTIGV 121 (192)
T ss_pred hceEEecccCccccCCcHHHHHHHHHHH-------------------h------------------cCCHHHhHHHHHHH
Confidence 7899999999999989999999875210 0 59999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeC-CeEEEec
Q 004537 309 EIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK-GSLLYFG 378 (746)
Q Consensus 309 aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~-G~iv~~G 378 (746)
+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|+|++||++..++.+.||++++|++ |++++.|
T Consensus 122 al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 122 ELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred HHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 999999999999999999999999999999999877999999999986446788999999999 9999876
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-41 Score=351.53 Aligned_cols=221 Identities=24% Similarity=0.385 Sum_probs=182.8
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCC---CCccEEEECCEeCCh
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP---TVGGSITYNDHPYSK 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~---~~~G~I~~~G~~~~~ 225 (746)
.++++|+++.| +++.+|+|+||+|++||+++|+||||||||||+++|+|..... +.+|+|.++|.++..
T Consensus 3 ~l~~~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~ 74 (249)
T PRK14253 3 KFNIENLDLFY--------GENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYG 74 (249)
T ss_pred eEEEeccEEEE--------CCeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEccc
Confidence 58999999998 2457999999999999999999999999999999999964311 258999999988731
Q ss_pred -----hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHH
Q 004537 226 -----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGE 300 (746)
Q Consensus 226 -----~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGe 300 (746)
..++.++|++|++.+++ .||.||+.++.... ....+...++++.+.++.+++.+...... +..+.+|||||
T Consensus 75 ~~~~~~~~~~i~~~~q~~~~~~-~tv~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~LS~G~ 150 (249)
T PRK14253 75 NIDVADLRIKVGMVFQKPNPFP-MSIYENVAYGLRAQ--GIKDKKVLDEVVERSLRGAALWDEVKDRL-KSHAFGLSGGQ 150 (249)
T ss_pred ccchHHHHhheeEEecCCCcCc-ccHHHHHHhHHHhc--CCCchHHHHHHHHHHHHHcCCchhhhHHh-hcCcccCCHHH
Confidence 34677999999999997 79999999875321 11123344566778888888754221111 23456899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCH
Q 004537 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380 (746)
Q Consensus 301 rqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~ 380 (746)
||||+|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++. ++.+.||++++|++|++++.|++
T Consensus 151 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~~~~d~i~~l~~G~i~~~g~~ 228 (249)
T PRK14253 151 QQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK-NYTIVIVTHSMQ-QARRISDRTAFFLMGELVEHDDT 228 (249)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEecCHH-HHHHhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999999976 689999999975 57788999999999999999998
Q ss_pred HHH
Q 004537 381 SEA 383 (746)
Q Consensus 381 ~~~ 383 (746)
+++
T Consensus 229 ~~~ 231 (249)
T PRK14253 229 QVI 231 (249)
T ss_pred HHH
Confidence 775
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-41 Score=343.40 Aligned_cols=209 Identities=26% Similarity=0.479 Sum_probs=178.0
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh--hc
Q 004537 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SL 227 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--~~ 227 (746)
++++||++.|. .+++|+|+++++||+++|+||||||||||+++|+|.. ++.+|+|.++|+++.. ..
T Consensus 1 ~~~~~l~~~~~----------~~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~--~~~~G~i~~~g~~~~~~~~~ 68 (213)
T TIGR01277 1 LALDKVRYEYE----------HLPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFI--EPASGSIKVNDQSHTGLAPY 68 (213)
T ss_pred CeEEeeeEEeC----------CcceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCC--CCCCcEEEECCEEcccCChh
Confidence 47899999881 2468999999999999999999999999999999954 3568999999998743 34
Q ss_pred cCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHH
Q 004537 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (746)
Q Consensus 228 ~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA 307 (746)
++.++||+|++.+++.+|+.||+.+...... . .....+++++++++.+||++..++. ++.||||||||++||
T Consensus 69 ~~~i~~v~q~~~~~~~~t~~en~~~~~~~~~--~-~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~la 140 (213)
T TIGR01277 69 QRPVSMLFQENNLFAHLTVRQNIGLGLHPGL--K-LNAEQQEKVVDAAQQVGIADYLDRL-----PEQLSGGQRQRVALA 140 (213)
T ss_pred ccceEEEeccCccCCCCcHHHHHHhHhhccC--C-ccHHHHHHHHHHHHHcCcHHHhhCC-----cccCCHHHHHHHHHH
Confidence 6779999999999998999999987643211 1 1122345678899999998766654 468999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecC
Q 004537 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (746)
Q Consensus 308 ~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (746)
|+|+.+|++++|||||+|||+.++..+.+.|+++.++ |+|||+++|++. ++.+.||++++|++|++++.|.
T Consensus 141 ral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~-~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 141 RCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLS-DARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCeEEEEECCeEEEecC
Confidence 9999999999999999999999999999999999764 899999999975 4667899999999999999875
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-41 Score=350.81 Aligned_cols=222 Identities=24% Similarity=0.412 Sum_probs=182.7
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCC-C--CCccEEEECCEeCCh
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-P--TVGGSITYNDHPYSK 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~-~--~~~G~I~~~G~~~~~ 225 (746)
.|+++|++++| +.+++|+|+|++|++||+++|+||||||||||+++|+|...+ | +.+|+|.++|+++..
T Consensus 4 ~l~~~~l~~~~--------~~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~ 75 (251)
T PRK14251 4 IISAKDVHLSY--------GNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYG 75 (251)
T ss_pred eEEEEeeEEEE--------CCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEccc
Confidence 58999999998 235799999999999999999999999999999999996531 2 358999999998631
Q ss_pred ------hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHH
Q 004537 226 ------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (746)
Q Consensus 226 ------~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGG 299 (746)
..++.++|++|++.+++ .||+||+.++..... ...++..+++++++++.+++....... -+..+.+||||
T Consensus 76 ~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~~~~LS~G 151 (251)
T PRK14251 76 SKMDLVELRKEVGMVFQQPTPFP-FSVYDNVAYGLKIAG--VKDKELIDQRVEESLKQAAIWKETKDN-LDRNAQAFSGG 151 (251)
T ss_pred ccchHHHhhccEEEEecCCccCC-CcHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCCcchHHH-hccChhhCCHH
Confidence 24667999999999886 799999988653221 112233445678889999885221111 12345789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecC
Q 004537 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (746)
Q Consensus 300 erqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (746)
||||++|||+|+.+|+++||||||+|||+.++..+.+.|+++.+ ++|||++||++. .+.+.||++++|++|+++..|+
T Consensus 152 q~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~~-~~~~~~d~i~~l~~G~i~~~~~ 229 (251)
T PRK14251 152 QQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKH-QYTFIMVTHNLQ-QAGRISDQTAFLMNGDLIEAGP 229 (251)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHc-CCeEEEEECCHH-HHHhhcCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999865 789999999975 4678899999999999999999
Q ss_pred HHHHH
Q 004537 380 ASEAM 384 (746)
Q Consensus 380 ~~~~~ 384 (746)
++++.
T Consensus 230 ~~~~~ 234 (251)
T PRK14251 230 TEEMF 234 (251)
T ss_pred HHHHH
Confidence 98764
|
|
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-41 Score=351.27 Aligned_cols=222 Identities=27% Similarity=0.415 Sum_probs=183.6
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCC-CC--CccEEEECCEeCCh
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-PT--VGGSITYNDHPYSK 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~-~~--~~G~I~~~G~~~~~ 225 (746)
.|+++||+++| +++.+|+|+||++++||+++|+||||||||||+++|+|.... |. .+|+|.++|+++..
T Consensus 6 ~i~~~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~ 77 (253)
T PRK14261 6 ILSTKNLNLWY--------GEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMD 77 (253)
T ss_pred eEEEeeeEEEE--------CCeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccc
Confidence 69999999998 345799999999999999999999999999999999995431 21 47999999998742
Q ss_pred ------hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHH
Q 004537 226 ------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (746)
Q Consensus 226 ------~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGG 299 (746)
..++.++|++|++.+++. ||+||+.+....+.. ......++.+.++++.+++.+...+.. +..++.||||
T Consensus 78 ~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~~LS~G 153 (253)
T PRK14261 78 SGADVVALRRKIGMVFQRPNPFPK-SIYENVAYGPRIHGE--KNKKTLDTIVEKSLKGAALWDEVKDRL-HDSALSLSGG 153 (253)
T ss_pred cccchhhhhceEEEEecCCccCcc-cHHHHHHhhHHhcCC--CCHHHHHHHHHHHHHHhcCchhhHHHh-hcChhhCCHH
Confidence 235679999999999984 999999987543211 122334556788888888754221111 2345689999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecC
Q 004537 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (746)
Q Consensus 300 erqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (746)
||||++|||+|+.+|+++||||||+|||+.++..+.+.|+++++ ++|||+++|++. ++.+.||++++|++|+++..|+
T Consensus 154 ~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~-~~tvii~sh~~~-~~~~~~d~v~~l~~G~i~~~g~ 231 (253)
T PRK14261 154 QQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK-EYTVIIVTHNMQ-QAARVSDYTGFMYLGKLIEFDK 231 (253)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh-CceEEEEEcCHH-HHHhhCCEEEEEECCEEEEcCC
Confidence 99999999999999999999999999999999999999999976 689999999975 4667899999999999999999
Q ss_pred HHHHH
Q 004537 380 ASEAM 384 (746)
Q Consensus 380 ~~~~~ 384 (746)
++++.
T Consensus 232 ~~~~~ 236 (253)
T PRK14261 232 TTQIF 236 (253)
T ss_pred HHHHH
Confidence 88764
|
|
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-41 Score=357.77 Aligned_cols=220 Identities=24% Similarity=0.379 Sum_probs=182.7
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCC-------CccEEEECCEe
Q 004537 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPT-------VGGSITYNDHP 222 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~-------~~G~I~~~G~~ 222 (746)
|+++|++++| +++.+|+|+||+|++||+++|+||||||||||+|+|+|.+. +. .+|+|.++|.+
T Consensus 2 l~~~nl~~~~--------~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~-p~~~~~~~~~~G~i~~~g~~ 72 (272)
T PRK13547 2 LTADHLHVAR--------RHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLT-GGGAPRGARVTGDVTLNGEP 72 (272)
T ss_pred eEEEEEEEEE--------CCEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CcccccccCCceEEEECCEE
Confidence 7899999988 34579999999999999999999999999999999999653 22 17999999998
Q ss_pred CCh----hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCC-CCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCC
Q 004537 223 YSK----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLP-NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVS 297 (746)
Q Consensus 223 ~~~----~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS 297 (746)
+.. .+++.++|++|++.+++.+||+||+.+....... ......+..++++++++.+||.+..++ .+..||
T Consensus 73 ~~~~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS 147 (272)
T PRK13547 73 LAAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGR-----DVTTLS 147 (272)
T ss_pred cccCCHHHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcC-----CcccCC
Confidence 742 3456789999998765568999999886321100 011112344568889999999866554 346899
Q ss_pred HHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEE
Q 004537 298 GGERKRVCIGNEII---------INPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLI 367 (746)
Q Consensus 298 GGerqRv~IA~aL~---------~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~ 367 (746)
|||||||+|||+|+ .+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.+.||+++
T Consensus 148 gG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~-~~~~~~d~i~ 226 (272)
T PRK13547 148 GGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPN-LAARHADRIA 226 (272)
T ss_pred HHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEE
Confidence 99999999999999 599999999999999999999999999999876 899999999975 5778899999
Q ss_pred EEeCCeEEEecCHHHHH
Q 004537 368 LLGKGSLLYFGKASEAM 384 (746)
Q Consensus 368 vL~~G~iv~~G~~~~~~ 384 (746)
+|++|++++.|+++++.
T Consensus 227 ~l~~G~i~~~g~~~~~~ 243 (272)
T PRK13547 227 MLADGAIVAHGAPADVL 243 (272)
T ss_pred EEECCeEEEecCHHHHc
Confidence 99999999999988763
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-41 Score=353.66 Aligned_cols=222 Identities=24% Similarity=0.395 Sum_probs=182.5
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCC-CC--CCccEEEECCEeCCh
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLM-EP--TVGGSITYNDHPYSK 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~-~~--~~~G~I~~~G~~~~~ 225 (746)
.++++|++++| +++.+|+|+|+++++||+++|+||||||||||+++|+|... .+ +.+|+|.++|+++..
T Consensus 21 ~l~~~~l~~~~--------~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~ 92 (268)
T PRK14248 21 ILEVKDLSIYY--------GEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILD 92 (268)
T ss_pred eEEEEEEEEEe--------CCceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEccc
Confidence 59999999998 34579999999999999999999999999999999999532 11 468999999998742
Q ss_pred ------hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHH
Q 004537 226 ------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (746)
Q Consensus 226 ------~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGG 299 (746)
..++.++|++|++.+++. |++||+.+...... .......++.+.+.++.+++.+..... -+..+..||||
T Consensus 93 ~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~~~~LSgG 168 (268)
T PRK14248 93 SNINVVNLRREIGMVFQKPNPFPK-SIYNNITHALKYAG--ERRKSVLDEIVEESLTKAALWDEVKDR-LHSSALSLSGG 168 (268)
T ss_pred ccccHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCCcchHHH-HhcCcccCCHH
Confidence 246679999999999885 99999998643221 112223345677888888885321111 12345689999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecC
Q 004537 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (746)
Q Consensus 300 erqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (746)
||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++. ++.+.||++++|++|++++.|+
T Consensus 169 q~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~v~~l~~G~i~~~~~ 246 (268)
T PRK14248 169 QQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE-EYSIIIVTHNMQ-QALRVSDRTAFFLNGDLVEYDQ 246 (268)
T ss_pred HHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEEeCHH-HHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999965 689999999975 4778899999999999999999
Q ss_pred HHHHH
Q 004537 380 ASEAM 384 (746)
Q Consensus 380 ~~~~~ 384 (746)
++++.
T Consensus 247 ~~~~~ 251 (268)
T PRK14248 247 TEQIF 251 (268)
T ss_pred HHHHH
Confidence 88764
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-41 Score=350.12 Aligned_cols=221 Identities=22% Similarity=0.390 Sum_probs=182.3
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCC----CccEEEECCEeCC
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPT----VGGSITYNDHPYS 224 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~----~~G~I~~~G~~~~ 224 (746)
.++++||+++| +++.+|+|+|++|++|++++|+||||||||||+++|+|... +. .+|+|.++|.++.
T Consensus 4 ~l~~~~l~~~~--------~~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~-~~~~~~~~G~v~~~g~~~~ 74 (251)
T PRK14249 4 KIKIRGVNFFY--------HKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMND-IVSGARLEGAVLLDNENIY 74 (251)
T ss_pred eEEEEEEEEEE--------CCeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC-ccccCCcccEEEECCEEcc
Confidence 58999999998 23569999999999999999999999999999999999643 32 2699999998864
Q ss_pred h------hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCH
Q 004537 225 K------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSG 298 (746)
Q Consensus 225 ~------~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSG 298 (746)
. .+++.++||+|++.+++. |++||+.+....+.. ..++...+++++.++.+++.+..... .+..+..|||
T Consensus 75 ~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~-~~~~~~~LS~ 150 (251)
T PRK14249 75 SPNLDVVNLRKRVGMVFQQPNPFPK-SIFDNVAFGPRMLGT--TAQSRLDEVVEKSLRQAALWDEVKDN-LHKSGLALSG 150 (251)
T ss_pred ccccChHHhhceEEEEecCCccCcC-cHHHHHhhHHHhcCC--ChhhHHHHHHHHHHHHhCCchhhhhH-hhCCcccCCH
Confidence 2 346789999999999985 999999987543211 11223345677788888875422211 1244678999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEec
Q 004537 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (746)
Q Consensus 299 GerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G 378 (746)
||||||+|||+|+.+|++|||||||+|||+.++..+.+.|+++. +++|||++||++. .+.+.||++++|++|++++.|
T Consensus 151 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tilivsh~~~-~~~~~~d~i~~l~~G~i~~~~ 228 (251)
T PRK14249 151 GQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK-QNYTIAIVTHNMQ-QAARASDWTGFLLTGDLVEYG 228 (251)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHhhCCEEEEEeCCeEEEeC
Confidence 99999999999999999999999999999999999999999985 5899999999975 467889999999999999999
Q ss_pred CHHHHH
Q 004537 379 KASEAM 384 (746)
Q Consensus 379 ~~~~~~ 384 (746)
+++++.
T Consensus 229 ~~~~~~ 234 (251)
T PRK14249 229 RTGEIF 234 (251)
T ss_pred CHHHHH
Confidence 988764
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-41 Score=352.24 Aligned_cols=214 Identities=31% Similarity=0.538 Sum_probs=172.5
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh----
Q 004537 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (746)
++++||+++|. ...+++|+|+|+++++||+++|+||||||||||+++|+|.. ++.+|+|.++|.++..
T Consensus 1 i~~~~l~~~~~------~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~--~~~~G~i~~~g~~~~~~~~~ 72 (237)
T cd03252 1 ITFEHVRFRYK------PDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFY--VPENGRVLVDGHDLALADPA 72 (237)
T ss_pred CEEEEEEEecC------CCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCc--CCCCCEEEECCeehHhcCHH
Confidence 47899999882 12357999999999999999999999999999999999964 3568999999998642
Q ss_pred hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHH-----HHHHHHHHHHc--CCCccccccccCccccCCCH
Q 004537 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQK-----EKRAIDVINEL--GLERCQDTMIGGSFVRGVSG 298 (746)
Q Consensus 226 ~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~-----~~~v~~~l~~l--gL~~~~~~~vg~~~~~~LSG 298 (746)
.+++.++|++|++.+++ .||+||+.+.... ...... .....+.++.+ ++.+..+ ..+++|||
T Consensus 73 ~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~-----~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~-----~~~~~LSg 141 (237)
T cd03252 73 WLRRQVGVVLQENVLFN-RSIRDNIALADPG-----MSMERVIEAAKLAGAHDFISELPEGYDTIVG-----EQGAGLSG 141 (237)
T ss_pred HHhhcEEEEcCCchhcc-chHHHHhhccCCC-----CCHHHHHHHHHHcCcHHHHHhCcccccchhh-----cCCCcCCH
Confidence 34677999999998886 6999999875321 111111 11223444444 3333222 34578999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEec
Q 004537 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (746)
Q Consensus 299 GerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G 378 (746)
||||||+|||+|+.+|++|||||||+|||+.++..+.+.|+++++ |+|||+++|++.. + ..||++++|++|++++.|
T Consensus 142 G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~~-~-~~~d~v~~l~~G~i~~~~ 218 (237)
T cd03252 142 GQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICA-GRTVIIIAHRLST-V-KNADRIIVMEKGRIVEQG 218 (237)
T ss_pred HHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHHH-H-HhCCEEEEEECCEEEEEc
Confidence 999999999999999999999999999999999999999999974 8999999999864 4 569999999999999999
Q ss_pred CHHHHHH
Q 004537 379 KASEAMA 385 (746)
Q Consensus 379 ~~~~~~~ 385 (746)
+++++.+
T Consensus 219 ~~~~~~~ 225 (237)
T cd03252 219 SHDELLA 225 (237)
T ss_pred CHHHHHh
Confidence 9888654
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-40 Score=353.64 Aligned_cols=222 Identities=23% Similarity=0.411 Sum_probs=181.4
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCC-C--CCccEEEECCEeCCh
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-P--TVGGSITYNDHPYSK 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~-~--~~~G~I~~~G~~~~~ 225 (746)
.|+++|++++| +++.+|+|+|++|++||+++|+|+||||||||+++|+|.... + +.+|+|.++|+++..
T Consensus 24 ~l~~~~l~~~~--------~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~ 95 (271)
T PRK14238 24 VFDTQNLNLWY--------GEDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFD 95 (271)
T ss_pred EEEEeeeEEEE--------CCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEccc
Confidence 69999999998 235699999999999999999999999999999999996531 2 468999999998731
Q ss_pred ------hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHH
Q 004537 226 ------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (746)
Q Consensus 226 ------~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGG 299 (746)
.+++.++|++|++.+++ .||+||+.++..... ...+...++.+.+.++.+++.+...... +..+..||||
T Consensus 96 ~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~l~~~~-~~~~~~LSgG 171 (271)
T PRK14238 96 KSYSVEELRTNVGMVFQKPNPFP-KSIYDNVTYGPKIHG--IKDKKTLDEIVEKSLRGAAIWDELKDRL-HDNAYGLSGG 171 (271)
T ss_pred ccccHHHHhhhEEEEecCCcccc-ccHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCcchHHHHH-hcCcccCCHH
Confidence 34678999999999887 599999998754221 1122233455677777775432111111 2345789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecC
Q 004537 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (746)
Q Consensus 300 erqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (746)
||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|++. .+.+.||++++|++|++++.|+
T Consensus 172 e~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~i~~~~d~i~~l~~G~i~~~g~ 249 (271)
T PRK14238 172 QQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK-DYSIIIVTHNMQ-QAARISDKTAFFLNGYVNEYDD 249 (271)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc-CCEEEEEEcCHH-HHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999976 799999999975 4678899999999999999999
Q ss_pred HHHHH
Q 004537 380 ASEAM 384 (746)
Q Consensus 380 ~~~~~ 384 (746)
++++.
T Consensus 250 ~~~~~ 254 (271)
T PRK14238 250 TDKIF 254 (271)
T ss_pred HHHHH
Confidence 88763
|
|
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-41 Score=351.22 Aligned_cols=218 Identities=26% Similarity=0.405 Sum_probs=182.1
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEe-----C
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP-----Y 223 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~-----~ 223 (746)
.|+++||++.| +++.+|+|+||++++||+++|+||||||||||+++|+|.. ++.+|+|.++|++ +
T Consensus 6 ~l~~~~l~~~~--------~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~--~p~~G~i~~~g~~~~~~~i 75 (258)
T PRK11701 6 LLSVRGLTKLY--------GPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARL--APDAGEVHYRMRDGQLRDL 75 (258)
T ss_pred eEEEeeeEEEc--------CCceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCC--CCCCCEEEECCcccccccc
Confidence 59999999998 2357999999999999999999999999999999999954 3468999999987 5
Q ss_pred Ch----h----ccCcEEEEecCCc--CCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCc-cccccccCcc
Q 004537 224 SK----S----LKSKIGFVTQDDV--LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-CQDTMIGGSF 292 (746)
Q Consensus 224 ~~----~----~~~~i~yv~Q~~~--l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~ 292 (746)
.. . .++.++||+|++. +++.+|+.||+.+...... .....+.++++.++++.+++.+ ..++ .
T Consensus 76 ~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~ 148 (258)
T PRK11701 76 YALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVG--ARHYGDIRATAGDWLERVEIDAARIDD-----L 148 (258)
T ss_pred ccCCHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhc--cCcHHHHHHHHHHHHHHcCCChhHHhC-----C
Confidence 32 1 2456999999973 6777899999976532111 1122334566889999999963 4443 3
Q ss_pred ccCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeC
Q 004537 293 VRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGK 371 (746)
Q Consensus 293 ~~~LSGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~ 371 (746)
+..||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||++. .+.+.||++++|++
T Consensus 149 ~~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~-~~~~~~d~i~~l~~ 227 (258)
T PRK11701 149 PTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLA-VARLLAHRLLVMKQ 227 (258)
T ss_pred CccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEEEEEEC
Confidence 4689999999999999999999999999999999999999999999998765 899999999975 46678999999999
Q ss_pred CeEEEecCHHHHH
Q 004537 372 GSLLYFGKASEAM 384 (746)
Q Consensus 372 G~iv~~G~~~~~~ 384 (746)
|++++.|+++++.
T Consensus 228 g~i~~~~~~~~~~ 240 (258)
T PRK11701 228 GRVVESGLTDQVL 240 (258)
T ss_pred CEEEEeCCHHHHh
Confidence 9999999988764
|
|
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=354.17 Aligned_cols=221 Identities=24% Similarity=0.391 Sum_probs=185.9
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCC----CCccEEEECCEeCC
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP----TVGGSITYNDHPYS 224 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~----~~~G~I~~~G~~~~ 224 (746)
.|+++||+++| +++++|+|+||+|++||+++|+||||||||||+++|+|... | +.+|+|.++|.++.
T Consensus 21 ~l~i~nl~~~~--------~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~-p~~~~~~~G~i~~~g~~i~ 91 (276)
T PRK14271 21 AMAAVNLTLGF--------AGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMND-KVSGYRYSGDVLLGGRSIF 91 (276)
T ss_pred EEEEeeEEEEE--------CCEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCC-cCCCCCCceEEEECCEEcc
Confidence 68999999998 34679999999999999999999999999999999999643 3 35899999998874
Q ss_pred h-----hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHH
Q 004537 225 K-----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (746)
Q Consensus 225 ~-----~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGG 299 (746)
. .+++.++|++|++.+|+ .||+||+.++.... ...+..+..+++.+.++.++|.+..++.. +..++.||||
T Consensus 92 ~~~~~~~~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~l-~~~~~~LSgG 167 (276)
T PRK14271 92 NYRDVLEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAH--KLVPRKEFRGVAQARLTEVGLWDAVKDRL-SDSPFRLSGG 167 (276)
T ss_pred ccchhHHHhhheEEeccCCccCC-ccHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHHcCCCchhhhHh-hCCcccCCHH
Confidence 2 34678999999999998 79999999864321 11233444456778899999875432222 2345689999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecC
Q 004537 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (746)
Q Consensus 300 erqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (746)
||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|++. ++.+.||++++|++|++++.|+
T Consensus 168 q~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~~~dri~~l~~G~i~~~g~ 245 (276)
T PRK14271 168 QQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD-RLTVIIVTHNLA-QAARISDRAALFFDGRLVEEGP 245 (276)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999976 589999999975 5778899999999999999999
Q ss_pred HHHHH
Q 004537 380 ASEAM 384 (746)
Q Consensus 380 ~~~~~ 384 (746)
++++.
T Consensus 246 ~~~~~ 250 (276)
T PRK14271 246 TEQLF 250 (276)
T ss_pred HHHHH
Confidence 98874
|
|
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-41 Score=332.07 Aligned_cols=217 Identities=29% Similarity=0.540 Sum_probs=185.9
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (746)
+|+.+|++|+. ..+.+|++||++++|||++||+||||||||||||.|+|.+. +.+|++.+||.+++.
T Consensus 1 mi~a~nls~~~--------~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~--p~~G~v~~~g~~l~~~~~ 70 (259)
T COG4559 1 MIRAENLSYSL--------AGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELS--PDSGEVTLNGVPLNSWPP 70 (259)
T ss_pred CeeeeeeEEEe--------ecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccC--CCCCeEeeCCcChhhCCH
Confidence 37889999987 56789999999999999999999999999999999999653 468999999999863
Q ss_pred -hccCcEEEEecCCcC-CCCCCHHHHHHHHHhccCCCCC--cHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHH
Q 004537 226 -SLKSKIGFVTQDDVL-FPHLTVKETLTYAALLRLPNTL--TKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301 (746)
Q Consensus 226 -~~~~~i~yv~Q~~~l-~~~lTV~E~l~~~~~~~~~~~~--~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGer 301 (746)
++.++-+.+||+..+ || .||+|.+.++. .|... ...+..+.+++++...++.+.+... ...||||||
T Consensus 71 ~~lA~~raVlpQ~s~laFp-Ftv~eVV~mGr---~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~-----y~~LSGGEq 141 (259)
T COG4559 71 EELARHRAVLPQNSSLAFP-FTVQEVVQMGR---IPHRSGREPEEDERIAAQALAATDLSGLAGRD-----YRTLSGGEQ 141 (259)
T ss_pred HHHHHHhhhcccCcccccc-eEHHHHHHhcc---cccccCCCchhhHHHHHHHHHHcChhhhhccc-----hhhcCchHH
Confidence 455677999999877 65 69999999985 34322 2235555678899998888766543 368999999
Q ss_pred HHHHHHHHHhh------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEE
Q 004537 302 KRVCIGNEIII------NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLL 375 (746)
Q Consensus 302 qRv~IA~aL~~------~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv 375 (746)
|||.+||.|+. ++++||||||||+||...+..++++.++++++|..|+++.||+.- ...+||||++|++||++
T Consensus 142 QRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNL-AA~YaDrivll~~Grv~ 220 (259)
T COG4559 142 QRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNL-AAQYADRIVLLHQGRVI 220 (259)
T ss_pred HHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchH-HHHhhheeeeeeCCeEe
Confidence 99999999975 456999999999999999999999999999999999999999875 56899999999999999
Q ss_pred EecCHHHHHH
Q 004537 376 YFGKASEAMA 385 (746)
Q Consensus 376 ~~G~~~~~~~ 385 (746)
..|++++++.
T Consensus 221 a~g~p~~vlt 230 (259)
T COG4559 221 ASGSPQDVLT 230 (259)
T ss_pred ecCCHHHhcC
Confidence 9999998763
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-42 Score=440.69 Aligned_cols=215 Identities=22% Similarity=0.346 Sum_probs=182.3
Q ss_pred ceEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCC---
Q 004537 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS--- 224 (746)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~--- 224 (746)
..|+|+||+|+|. .+.+++|+|+|++|+|||.+||+|+||||||||+++|.| +++| .+|+|.+||+|++
T Consensus 1233 g~I~f~nVsf~Y~------~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~r-l~~p-~~G~I~IdG~di~~i~ 1304 (1495)
T PLN03232 1233 GSIKFEDVHLRYR------PGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFR-IVEL-EKGRIMIDDCDVAKFG 1304 (1495)
T ss_pred CcEEEEEEEEEEC------CCCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhC-CCcC-CCceEEECCEEhhhCC
Confidence 3699999999993 233579999999999999999999999999999999996 4544 5899999999986
Q ss_pred -hhccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcC-------CCccccccccCccccCC
Q 004537 225 -KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG-------LERCQDTMIGGSFVRGV 296 (746)
Q Consensus 225 -~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~~~vg~~~~~~L 296 (746)
+.+|++|+|||||+.+|+. |+||||.++. ..+++ ++.++++..+ +++..||.+|+. ...|
T Consensus 1305 ~~~lR~~i~iVpQdp~LF~g-TIr~NL~~~~------~~sde----ei~~al~~a~l~~~I~~lp~GLdt~v~e~-G~~L 1372 (1495)
T PLN03232 1305 LTDLRRVLSIIPQSPVLFSG-TVRFNIDPFS------EHNDA----DLWEALERAHIKDVIDRNPFGLDAEVSEG-GENF 1372 (1495)
T ss_pred HHHHHhhcEEECCCCeeeCc-cHHHHcCCCC------CCCHH----HHHHHHHHcCCHHHHHhCcCCCCceecCC-CCCC
Confidence 3578999999999999985 9999998642 12332 2333343333 356788998864 3569
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEE
Q 004537 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (746)
Q Consensus 297 SGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~ 376 (746)
|||||||++|||||+++|+||+||||||+||++++..|.+.|++.. +++|+|+++|+++. ...||+|++|++|++++
T Consensus 1373 SgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~-~~~TvI~IAHRl~t--i~~~DrIlVL~~G~ivE 1449 (1495)
T PLN03232 1373 SVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEF-KSCTMLVIAHRLNT--IIDCDKILVLSSGQVLE 1449 (1495)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHHH--HHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999875 48999999999864 45699999999999999
Q ss_pred ecCHHHHHH
Q 004537 377 FGKASEAMA 385 (746)
Q Consensus 377 ~G~~~~~~~ 385 (746)
.|+|+|+++
T Consensus 1450 ~Gt~~eLl~ 1458 (1495)
T PLN03232 1450 YDSPQELLS 1458 (1495)
T ss_pred ECCHHHHHh
Confidence 999999874
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-42 Score=438.01 Aligned_cols=215 Identities=23% Similarity=0.345 Sum_probs=182.0
Q ss_pred ceEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh--
Q 004537 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (746)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (746)
..|+|+||+|+|+ .+.+++|+|||++|+|||.+||+|+||||||||+++|.| ++++ .+|+|.+||+|+++
T Consensus 1283 g~I~f~nVsf~Y~------~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~r-l~~~-~~G~I~IdG~dI~~i~ 1354 (1522)
T TIGR00957 1283 GRVEFRNYCLRYR------EDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFR-INES-AEGEIIIDGLNIAKIG 1354 (1522)
T ss_pred CcEEEEEEEEEeC------CCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhc-CccC-CCCeEEECCEEccccC
Confidence 4699999999993 223479999999999999999999999999999999996 5554 58999999999863
Q ss_pred --hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcC-------CCccccccccCccccCC
Q 004537 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG-------LERCQDTMIGGSFVRGV 296 (746)
Q Consensus 226 --~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~~~vg~~~~~~L 296 (746)
.+|++|+|||||+.+|+. |+||||.... ..++++ +.++++..+ +++..||.+|+. ...|
T Consensus 1355 ~~~LR~~i~iVpQdp~LF~g-TIr~NLdp~~------~~sdee----i~~al~~a~l~~~I~~lp~GLdt~v~e~-G~~L 1422 (1522)
T TIGR00957 1355 LHDLRFKITIIPQDPVLFSG-SLRMNLDPFS------QYSDEE----VWWALELAHLKTFVSALPDKLDHECAEG-GENL 1422 (1522)
T ss_pred HHHHHhcCeEECCCCcccCc-cHHHHcCccc------CCCHHH----HHHHHHHcCcHHHHhhCccCCCceecCC-CCcC
Confidence 678999999999999985 9999997321 123322 333444433 356789999864 3569
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEE
Q 004537 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (746)
Q Consensus 297 SGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~ 376 (746)
|||||||++|||||+++|+||+||||||+||+++...|.+.|++.. +++|||+|+|+++. ...||+|++|++|+|++
T Consensus 1423 SgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~-~~~TvI~IAHRl~t--i~~~DrIlVld~G~IvE 1499 (1522)
T TIGR00957 1423 SVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQF-EDCTVLTIAHRLNT--IMDYTRVIVLDKGEVAE 1499 (1522)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH--HHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999865 48999999999864 56799999999999999
Q ss_pred ecCHHHHHH
Q 004537 377 FGKASEAMA 385 (746)
Q Consensus 377 ~G~~~~~~~ 385 (746)
.|+|+++++
T Consensus 1500 ~G~~~eLl~ 1508 (1522)
T TIGR00957 1500 FGAPSNLLQ 1508 (1522)
T ss_pred ECCHHHHHh
Confidence 999999975
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-41 Score=342.14 Aligned_cols=203 Identities=30% Similarity=0.504 Sum_probs=173.1
Q ss_pred EEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh-----
Q 004537 151 KFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----- 225 (746)
Q Consensus 151 ~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~----- 225 (746)
.+ ||+++| +++.+ |+|+++++ |+++|+||||||||||+++|+|.. ++.+|+|.++|.++..
T Consensus 3 ~~-~l~~~~--------~~~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~--~~~~G~i~~~g~~~~~~~~~~ 68 (214)
T cd03297 3 CV-DIEKRL--------PDFTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLE--KPDGGTIVLNGTVLFDSRKKI 68 (214)
T ss_pred ee-eeeEec--------CCeee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCC--CCCCceEEECCEecccccchh
Confidence 44 888888 23444 99999999 999999999999999999999964 3468999999988641
Q ss_pred ---hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHH
Q 004537 226 ---SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (746)
Q Consensus 226 ---~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerq 302 (746)
..++.++|++|++.+++.+|++||+.+..... ..+..++++.++++.+|+++..+.. ++.|||||||
T Consensus 69 ~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~q 138 (214)
T cd03297 69 NLPPQQRKIGLVFQQYALFPHLNVRENLAFGLKRK-----RNREDRISVDELLDLLGLDHLLNRY-----PAQLSGGEKQ 138 (214)
T ss_pred hhhhHhhcEEEEecCCccCCCCCHHHHHHHHHhhC-----CHHHHHHHHHHHHHHcCCHhHhhcC-----cccCCHHHHH
Confidence 23567999999999998899999998865321 2334456788999999998665543 4689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEec
Q 004537 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (746)
Q Consensus 303 Rv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G 378 (746)
|++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+.||++++|++|++++.|
T Consensus 139 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 139 RVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLS-EAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHH-HHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999999999999999999875 899999999975 466889999999999998875
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-41 Score=385.24 Aligned_cols=219 Identities=23% Similarity=0.400 Sum_probs=187.5
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (746)
.|+++|++++| +++++|+|+||+|++||+++|+||||||||||+|+|+|.+ ++.+|+|.++|.++..
T Consensus 4 ~i~~~~l~~~~--------~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~--~p~~G~i~~~g~~~~~~~~ 73 (501)
T PRK10762 4 LLQLKGIDKAF--------PGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIY--TRDAGSILYLGKEVTFNGP 73 (501)
T ss_pred eEEEeeeEEEe--------CCeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCC--CCCCcEEEECCEECCCCCH
Confidence 58999999998 3457999999999999999999999999999999999965 3458999999998742
Q ss_pred -h-ccCcEEEEecCCcCCCCCCHHHHHHHHHhccCC-CCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHH
Q 004537 226 -S-LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLP-NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (746)
Q Consensus 226 -~-~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerq 302 (746)
. .++.++||+|++.+++.+||+||+.++...... ...+..+.+++++++++.+||++..+.. +..|||||||
T Consensus 74 ~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~q 148 (501)
T PRK10762 74 KSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKL-----VGELSIGEQQ 148 (501)
T ss_pred HHHHhCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCc-----hhhCCHHHHH
Confidence 1 246799999999999999999999986432110 1122334456788999999998776654 4589999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHH
Q 004537 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (746)
Q Consensus 303 Rv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~ 382 (746)
||+|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. ++.+.||+|++|++|+++..|++++
T Consensus 149 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~-~~~~~~d~i~~l~~G~i~~~~~~~~ 227 (501)
T PRK10762 149 MVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLK-EIFEICDDVTVFRDGQFIAEREVAD 227 (501)
T ss_pred HHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeCCEEEEecCcCc
Confidence 999999999999999999999999999999999999999877999999999975 5778999999999999999998765
Q ss_pred H
Q 004537 383 A 383 (746)
Q Consensus 383 ~ 383 (746)
+
T Consensus 228 ~ 228 (501)
T PRK10762 228 L 228 (501)
T ss_pred C
Confidence 4
|
|
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=350.61 Aligned_cols=222 Identities=22% Similarity=0.423 Sum_probs=183.7
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCC-C--CccEEEECCEeCCh
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP-T--VGGSITYNDHPYSK 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~-~--~~G~I~~~G~~~~~ 225 (746)
.|+++||+++| +++.+|+|+|+++++||+++|+|+||||||||+|+|+|..... + .+|+|.++|+++..
T Consensus 7 ~l~~~~l~~~~--------~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~ 78 (259)
T PRK14260 7 AIKVKDLSFYY--------NTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYD 78 (259)
T ss_pred eEEEEEEEEEE--------CCeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccc
Confidence 58999999998 2356999999999999999999999999999999999964321 2 48999999998732
Q ss_pred ------hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHH
Q 004537 226 ------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (746)
Q Consensus 226 ------~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGG 299 (746)
.+++.++|++|++.+|+ +||+||+.++...+. ...+....+++.++++.+++.+..... .+..+..||||
T Consensus 79 ~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~-~~~~~~~LS~G 154 (259)
T PRK14260 79 PRININRLRRQIGMVFQRPNPFP-MSIYENVAYGVRISA--KLPQADLDEIVESALKGAALWQEVKDK-LNKSALGLSGG 154 (259)
T ss_pred cccchHhhhhheEEEecccccCC-ccHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhhH-hcCCcccCCHH
Confidence 34568999999999997 899999988754321 123334456678889988884321111 12345789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEe-----CCeE
Q 004537 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG-----KGSL 374 (746)
Q Consensus 300 erqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~-----~G~i 374 (746)
||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++. ++.+.||++++|+ +|++
T Consensus 155 ~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~i~~~~d~i~~l~~~~~~~G~i 232 (259)
T PRK14260 155 QQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS-ELTIAIVTHNMQ-QATRVSDFTAFFSTDESRIGQM 232 (259)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCeEEEEeccCCCCceE
Confidence 99999999999999999999999999999999999999999875 699999999975 5778999999998 5999
Q ss_pred EEecCHHHHH
Q 004537 375 LYFGKASEAM 384 (746)
Q Consensus 375 v~~G~~~~~~ 384 (746)
++.|+++++.
T Consensus 233 ~~~~~~~~~~ 242 (259)
T PRK14260 233 VEFGVTTQIF 242 (259)
T ss_pred EEeCCHHHHh
Confidence 9999999874
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-40 Score=347.43 Aligned_cols=222 Identities=25% Similarity=0.395 Sum_probs=181.4
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCC-CCC--CccEEEECCEeCCh
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLM-EPT--VGGSITYNDHPYSK 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~-~~~--~~G~I~~~G~~~~~ 225 (746)
.++++||+++| +++.+|+|+|+++++||+++|+||||||||||+++|+|... .+. .+|+|.++|+++..
T Consensus 5 ~l~~~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~ 76 (252)
T PRK14255 5 IITSSDVHLFY--------GKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYA 76 (252)
T ss_pred eEEEEeEEEEE--------CCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEccc
Confidence 58999999998 23579999999999999999999999999999999999642 121 48999999998731
Q ss_pred ------hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHH
Q 004537 226 ------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (746)
Q Consensus 226 ------~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGG 299 (746)
..++.++|++|++.+++ .||+||+.+....+.. ..++..++++.+.++.+++....... -+..+..||||
T Consensus 77 ~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~i~~~-~~~~~~~LS~G 152 (252)
T PRK14255 77 PNEDVVQLRKQVGMVFQQPNPFP-FSIYENVIYGLRLAGV--KDKAVLDEAVETSLKQAAIWDEVKDH-LHESALSLSGG 152 (252)
T ss_pred ccccHHHhcCeEEEEECCCccCC-CcHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHcCCccchhhH-HhcCcccCCHH
Confidence 34578999999999998 6999999987543211 12222344567778888764221111 12345689999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecC
Q 004537 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (746)
Q Consensus 300 erqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (746)
||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ +.|||++||++. .+.+.||+|++|++|+++..|+
T Consensus 153 q~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~-~~~~~~d~i~~l~~G~i~~~~~ 230 (252)
T PRK14255 153 QQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD-QYTIILVTHSMH-QASRISDKTAFFLTGNLIEFAD 230 (252)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEECCHH-HHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999976 589999999975 5778899999999999999999
Q ss_pred HHHHH
Q 004537 380 ASEAM 384 (746)
Q Consensus 380 ~~~~~ 384 (746)
+.+..
T Consensus 231 ~~~~~ 235 (252)
T PRK14255 231 TKQMF 235 (252)
T ss_pred HHHHh
Confidence 88764
|
|
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-41 Score=347.96 Aligned_cols=200 Identities=33% Similarity=0.491 Sum_probs=171.4
Q ss_pred ccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---hccCcEEEEe-cCCcCCCC
Q 004537 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---SLKSKIGFVT-QDDVLFPH 243 (746)
Q Consensus 168 ~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---~~~~~i~yv~-Q~~~l~~~ 243 (746)
+++++|+|+||+|++||+++|+||||||||||+++|+|.. ++.+|+|.++|+++.. ..++.++|++ |++.+++.
T Consensus 32 ~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~--~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~ 109 (236)
T cd03267 32 REVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLL--QPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWD 109 (236)
T ss_pred CCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCc--CCCceEEEECCEEccccchhhcccEEEEcCCccccCCC
Confidence 4567999999999999999999999999999999999954 3468999999987532 3467899998 55778888
Q ss_pred CCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 004537 244 LTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPT 323 (746)
Q Consensus 244 lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~illLDEPT 323 (746)
+||+||+.+..... ....++..+++.++++.+||++..++.+ ..||||||||++||++|+.+|++|||||||
T Consensus 110 ~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrl~la~al~~~p~llllDEPt 181 (236)
T cd03267 110 LPVIDSFYLLAAIY---DLPPARFKKRLDELSELLDLEELLDTPV-----RQLSLGQRMRAEIAAALLHEPEILFLDEPT 181 (236)
T ss_pred CcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 99999998865432 1234445566788999999988777654 589999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEec
Q 004537 324 SGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (746)
Q Consensus 324 sgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G 378 (746)
+|||+.++..+.+.|++++++ |+|||++||++. ++.+.||++++|++|++++.|
T Consensus 182 ~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 182 IGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMK-DIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHH-HHHHhCCEEEEEeCCEEEecC
Confidence 999999999999999999764 899999999975 577889999999999998765
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=350.11 Aligned_cols=222 Identities=23% Similarity=0.417 Sum_probs=185.1
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCC----CccEEEECCEeCC
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPT----VGGSITYNDHPYS 224 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~----~~G~I~~~G~~~~ 224 (746)
.|+++||+++| +++.+|+|+||++++||+++|+||||||||||+++|+|... +. .+|+|.++|+++.
T Consensus 7 ~l~~~nl~~~~--------~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~-~~g~i~~~G~i~~~g~~i~ 77 (261)
T PRK14258 7 AIKVNNLSFYY--------DTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNE-LESEVRVEGRVEFFNQNIY 77 (261)
T ss_pred eEEEeeEEEEe--------CCeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccC-CCCCccccceEEECCEEhh
Confidence 59999999998 23469999999999999999999999999999999999653 31 3799999998863
Q ss_pred ------hhccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCH
Q 004537 225 ------KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSG 298 (746)
Q Consensus 225 ------~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSG 298 (746)
..+++.++|++|++.+++ +|++||+.+...... ..+..+..+++.++++.+++.+..+... +..+..|||
T Consensus 78 ~~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LSg 153 (261)
T PRK14258 78 ERRVNLNRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVG--WRPKLEIDDIVESALKDADLWDEIKHKI-HKSALDLSG 153 (261)
T ss_pred ccccchHHhhccEEEEecCCccCc-ccHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCcchhhhHh-cCCcccCCH
Confidence 134677999999999988 899999988653221 1123344567888999998854322211 234578999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCChHHHhccCEEEEEeC-----C
Q 004537 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGK-----G 372 (746)
Q Consensus 299 GerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~-~g~Tvi~~~H~~~~~i~~~~D~i~vL~~-----G 372 (746)
|||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++||++. ++.+.||+|++|++ |
T Consensus 154 Gq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~-~i~~~~d~i~~l~~~~~~~G 232 (261)
T PRK14258 154 GQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLH-QVSRLSDFTAFFKGNENRIG 232 (261)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhcCEEEEEccCCCcCc
Confidence 999999999999999999999999999999999999999999875 4899999999975 57889999999999 9
Q ss_pred eEEEecCHHHHH
Q 004537 373 SLLYFGKASEAM 384 (746)
Q Consensus 373 ~iv~~G~~~~~~ 384 (746)
++++.|+++++.
T Consensus 233 ~i~~~~~~~~~~ 244 (261)
T PRK14258 233 QLVEFGLTKKIF 244 (261)
T ss_pred eEEEeCCHHHHH
Confidence 999999999874
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-41 Score=385.32 Aligned_cols=219 Identities=25% Similarity=0.408 Sum_probs=187.2
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (746)
.|+++|++++| +++.+|+|+||+|++||+++|+||||||||||+|+|+|.. ++.+|+|.++|+++..
T Consensus 5 ~l~~~~l~~~~--------~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~--~p~~G~i~~~g~~i~~~~~ 74 (510)
T PRK09700 5 YISMAGIGKSF--------GPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIH--EPTKGTITINNINYNKLDH 74 (510)
T ss_pred eEEEeeeEEEc--------CCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCc--CCCccEEEECCEECCCCCH
Confidence 59999999998 3457999999999999999999999999999999999964 3468999999998742
Q ss_pred --hccCcEEEEecCCcCCCCCCHHHHHHHHHhcc--C-C-CCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHH
Q 004537 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLR--L-P-NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (746)
Q Consensus 226 --~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~--~-~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGG 299 (746)
..++.++||+|++.+++.+||+||+.++.... . . ......+..+++.++++.+||.+..++. +++||||
T Consensus 75 ~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgG 149 (510)
T PRK09700 75 KLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEK-----VANLSIS 149 (510)
T ss_pred HHHHHCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccc-----hhhCCHH
Confidence 12457999999999999999999998754210 0 0 0012334456788999999998776654 4689999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecC
Q 004537 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (746)
Q Consensus 300 erqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (746)
|||||+|||+|+.+|++|||||||+|||+.++..+++.|++++++|+|||++||++. .+...||++++|++|++++.|+
T Consensus 150 ~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~-~~~~~~d~v~~l~~G~i~~~g~ 228 (510)
T PRK09700 150 HKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLA-EIRRICDRYTVMKDGSSVCSGM 228 (510)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEeeecc
Confidence 999999999999999999999999999999999999999999888999999999975 4778899999999999999999
Q ss_pred HHHH
Q 004537 380 ASEA 383 (746)
Q Consensus 380 ~~~~ 383 (746)
++++
T Consensus 229 ~~~~ 232 (510)
T PRK09700 229 VSDV 232 (510)
T ss_pred hhhC
Confidence 8764
|
|
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=355.33 Aligned_cols=222 Identities=23% Similarity=0.368 Sum_probs=182.5
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCC-CC--CCccEEEECCEeCCh
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLM-EP--TVGGSITYNDHPYSK 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~-~~--~~~G~I~~~G~~~~~ 225 (746)
.|+++||+++| +++.+|+|+|++|++||+++|+||||||||||+++|+|... .+ +.+|+|.++|+++..
T Consensus 39 ~l~~~~l~~~~--------~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~ 110 (286)
T PRK14275 39 HVVAKNFSIYY--------GEFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYG 110 (286)
T ss_pred EEEEeeeEEEE--------CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhh
Confidence 69999999998 23469999999999999999999999999999999999542 13 368999999988642
Q ss_pred ------hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHH
Q 004537 226 ------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (746)
Q Consensus 226 ------~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGG 299 (746)
.+++.++||+|++.+++. ||.||+.++...... .+....++++.++++.+++.+..... -+..+..||||
T Consensus 111 ~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~-~~~~~~~LSgG 186 (286)
T PRK14275 111 KFTDEVLLRKKIGMVFQKPNPFPK-SIFDNIAYGPRLHGI--NDKKQLEEIVEKSLRKAALWDEVSDR-LDKNALGLSGG 186 (286)
T ss_pred cccchHHhhhcEEEECCCCCCCcc-CHHHHHHhHHHhcCC--CcHHHHHHHHHHHHHHhCCccchhhH-hhCChhhCCHH
Confidence 246789999999998875 999999987543211 12233445677888888874211111 12345789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecC
Q 004537 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (746)
Q Consensus 300 erqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (746)
|||||+|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|++. ++.+.||++++|++|++++.|+
T Consensus 187 q~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tvIivsH~~~-~~~~~~d~i~~L~~G~i~~~g~ 264 (286)
T PRK14275 187 QQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG-SYTIMIVTHNMQ-QASRVSDYTMFFYEGVLVEHAP 264 (286)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999875 689999999975 4678899999999999999999
Q ss_pred HHHHH
Q 004537 380 ASEAM 384 (746)
Q Consensus 380 ~~~~~ 384 (746)
++++.
T Consensus 265 ~~~~~ 269 (286)
T PRK14275 265 TAQLF 269 (286)
T ss_pred HHHHH
Confidence 88864
|
|
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-40 Score=346.74 Aligned_cols=222 Identities=24% Similarity=0.344 Sum_probs=181.3
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (746)
.|+++||++.| +++.+|+|+|+++++||+++|+||||||||||+++|+|....++.+|+|.++|.++..
T Consensus 7 ~l~~~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~ 78 (252)
T CHL00131 7 ILEIKNLHASV--------NENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEP 78 (252)
T ss_pred eEEEEeEEEEe--------CCEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCCh
Confidence 59999999998 2356999999999999999999999999999999999953223568999999998743
Q ss_pred -hccC-cEEEEecCCcCCCCCCHHHHHHHHHhccCC----CCCcHHHHHHHHHHHHHHcCCC-ccccccccCccccCCCH
Q 004537 226 -SLKS-KIGFVTQDDVLFPHLTVKETLTYAALLRLP----NTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVSG 298 (746)
Q Consensus 226 -~~~~-~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~----~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSG 298 (746)
..++ .++|++|++.+++.+|+.|++.+....... ......+..+++.++++.+|+. +..++.++ .+|||
T Consensus 79 ~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~----~~LSg 154 (252)
T CHL00131 79 EERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVN----EGFSG 154 (252)
T ss_pred hhhheeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccc----cCCCH
Confidence 1222 488999999999999999999876432110 0112223345678899999997 34444321 25999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhc-cCEEEEEeCCeEEEe
Q 004537 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHK-FDKLILLGKGSLLYF 377 (746)
Q Consensus 299 GerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~-~D~i~vL~~G~iv~~ 377 (746)
||||||+|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++.. +... ||++++|++|++++.
T Consensus 155 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~-~~~~~~d~i~~l~~G~i~~~ 233 (252)
T CHL00131 155 GEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRL-LDYIKPDYVHVMQNGKIIKT 233 (252)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHH-HHhhhCCEEEEEeCCEEEEe
Confidence 99999999999999999999999999999999999999999998779999999999753 4454 899999999999999
Q ss_pred cCHHHH
Q 004537 378 GKASEA 383 (746)
Q Consensus 378 G~~~~~ 383 (746)
|+++.+
T Consensus 234 ~~~~~~ 239 (252)
T CHL00131 234 GDAELA 239 (252)
T ss_pred cChhhh
Confidence 999854
|
|
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-42 Score=326.92 Aligned_cols=218 Identities=29% Similarity=0.504 Sum_probs=192.7
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCC----
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---- 224 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~---- 224 (746)
.|+++|+.++| +...+|++||++.+.|+++.|+|.|||||||+|+||. .+.. +..|+|.+||+.+.
T Consensus 6 ~l~v~dlHK~~--------G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN-~LE~-P~~G~I~v~geei~~k~~ 75 (256)
T COG4598 6 ALEVEDLHKRY--------GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCIN-FLEK-PSAGSIRVNGEEIRLKRD 75 (256)
T ss_pred ceehhHHHhhc--------ccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHH-hhcC-CCCceEEECCeEEEeeeC
Confidence 58899999888 6678999999999999999999999999999999998 4543 56899999998762
Q ss_pred -------------hhccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCc
Q 004537 225 -------------KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGS 291 (746)
Q Consensus 225 -------------~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~ 291 (746)
+.+|.+.++|+|+.+|++++||.||+.-+...-+ ..++.+..++++.+|+.+||.+..|.
T Consensus 76 ~~G~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVL--g~~k~ea~e~Ae~~L~kVGi~ek~~~----- 148 (256)
T COG4598 76 KDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVL--GVSKAEAIERAEKYLAKVGIAEKADA----- 148 (256)
T ss_pred CCCCeeeCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhh--cCCHHHHHHHHHHHHHHhCchhhhhc-----
Confidence 1246779999999999999999999976532211 35678888899999999999887774
Q ss_pred cccCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeC
Q 004537 292 FVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 371 (746)
Q Consensus 292 ~~~~LSGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~ 371 (746)
++..|||||+||++|||||+.+|+++++|||||+|||+-.-++++.+++|+++|+|.+++||.+.. ..+...+|++|++
T Consensus 149 YP~~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~F-AR~Vss~v~fLh~ 227 (256)
T COG4598 149 YPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGF-ARDVSSHVIFLHQ 227 (256)
T ss_pred CccccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhH-HHhhhhheEEeec
Confidence 567899999999999999999999999999999999999999999999999999999999999764 5678899999999
Q ss_pred CeEEEecCHHHHH
Q 004537 372 GSLLYFGKASEAM 384 (746)
Q Consensus 372 G~iv~~G~~~~~~ 384 (746)
|.|-+.|+|+++.
T Consensus 228 G~iEE~G~P~qvf 240 (256)
T COG4598 228 GKIEEEGPPEQVF 240 (256)
T ss_pred ceecccCChHHHh
Confidence 9999999999874
|
|
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-40 Score=348.03 Aligned_cols=216 Identities=20% Similarity=0.345 Sum_probs=180.5
Q ss_pred ceEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCC---CCccEEEECCEeCC
Q 004537 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP---TVGGSITYNDHPYS 224 (746)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~---~~~G~I~~~G~~~~ 224 (746)
..|+++||+++| ++.+|+|+|+++++||+++|+||||||||||+++|+|... + +++|+|.++|+++.
T Consensus 3 ~~l~~~~l~~~~---------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-~~~~~~~G~i~~~g~~i~ 72 (254)
T PRK10418 3 QQIELRNIALQA---------AQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILP-AGVRQTAGRVLLDGKPVA 72 (254)
T ss_pred cEEEEeCeEEEe---------ccceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCCCcCCEEEECCeecc
Confidence 368999999987 2369999999999999999999999999999999999653 3 16899999999875
Q ss_pred h-h-ccCcEEEEecCCc--CCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCcc---ccccccCccccCCC
Q 004537 225 K-S-LKSKIGFVTQDDV--LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC---QDTMIGGSFVRGVS 297 (746)
Q Consensus 225 ~-~-~~~~i~yv~Q~~~--l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~---~~~~vg~~~~~~LS 297 (746)
. . .++.++||+|++. +.+.+|+.+++.+.+.... ... .++++.++++.++|.+. .++ .+..||
T Consensus 73 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~l~~~~l~~~~~~~~~-----~~~~LS 142 (254)
T PRK10418 73 PCALRGRKIATIMQNPRSAFNPLHTMHTHARETCLALG---KPA--DDATLTAALEAVGLENAARVLKL-----YPFEMS 142 (254)
T ss_pred ccccccceEEEEecCCccccCccccHHHHHHHHHHHcC---CCh--HHHHHHHHHHHcCCCChhhhhhc-----CCcccC
Confidence 3 2 2357999999974 4566799999876543211 111 23568889999999752 333 456899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEE
Q 004537 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (746)
Q Consensus 298 GGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~ 376 (746)
|||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.+.||++++|++|++++
T Consensus 143 ~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~-~~~~~~d~v~~l~~G~i~~ 221 (254)
T PRK10418 143 GGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMG-VVARLADDVAVMSHGRIVE 221 (254)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999764 899999999975 4668899999999999999
Q ss_pred ecCHHHHH
Q 004537 377 FGKASEAM 384 (746)
Q Consensus 377 ~G~~~~~~ 384 (746)
.|+++++.
T Consensus 222 ~~~~~~~~ 229 (254)
T PRK10418 222 QGDVETLF 229 (254)
T ss_pred ecCHHHHh
Confidence 99988864
|
|
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-40 Score=346.78 Aligned_cols=222 Identities=22% Similarity=0.393 Sum_probs=184.8
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCC-C--CCccEEEECCEeCCh
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-P--TVGGSITYNDHPYSK 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~-~--~~~G~I~~~G~~~~~ 225 (746)
.++++||++.| +++.+|+|+|++|++||+++|+||||||||||+++|+|.... + +.+|+|.+||+++..
T Consensus 3 ~l~~~~v~~~~--------~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~ 74 (250)
T PRK14266 3 RIEVENLNTYF--------DDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYD 74 (250)
T ss_pred EEEEEeEEEEe--------CCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEccc
Confidence 48899999988 245799999999999999999999999999999999995421 2 368999999998742
Q ss_pred ------hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHH
Q 004537 226 ------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (746)
Q Consensus 226 ------~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGG 299 (746)
..++.++|++|++.+|+. |+.||+.++.... .....+..++++.+.++.+++.+...... +..+..||||
T Consensus 75 ~~~~~~~~~~~i~~~~q~~~~~~~-t~~~nl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~~LS~G 150 (250)
T PRK14266 75 PAVDVVELRKKVGMVFQKPNPFPK-SIFDNVAYGLRIH--GEDDEDFIEERVEESLKAAALWDEVKDKL-DKSALGLSGG 150 (250)
T ss_pred ccccHHHHhhheEEEecCCccCcc-hHHHHHHhHHhhc--CCCCHHHHHHHHHHHHHHcCCchhHHHHH-hCCcccCCHH
Confidence 346789999999999985 9999998865322 11223344567888999998854322111 2345789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecC
Q 004537 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (746)
Q Consensus 300 erqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (746)
||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|++. ++.+.+|++++|++|++++.|+
T Consensus 151 q~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiii~sh~~~-~~~~~~~~i~~l~~G~i~~~g~ 228 (250)
T PRK14266 151 QQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKE-DYTIVIVTHNMQ-QATRVSKYTSFFLNGEIIESGL 228 (250)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEECCHH-HHHhhcCEEEEEECCeEEEeCC
Confidence 99999999999999999999999999999999999999999965 899999999975 5788899999999999999999
Q ss_pred HHHHH
Q 004537 380 ASEAM 384 (746)
Q Consensus 380 ~~~~~ 384 (746)
++++.
T Consensus 229 ~~~~~ 233 (250)
T PRK14266 229 TDQIF 233 (250)
T ss_pred HHHHH
Confidence 98864
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=382.74 Aligned_cols=213 Identities=24% Similarity=0.439 Sum_probs=186.0
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (746)
.|+++||+++| +++.+|+|+||+|++||+++|+||||||||||||+|+|.+ ++.+|+|.++|.++..
T Consensus 11 ~l~~~~l~~~~--------~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~--~p~~G~i~~~g~~~~~~~~ 80 (510)
T PRK15439 11 LLCARSISKQY--------SGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIV--PPDSGTLEIGGNPCARLTP 80 (510)
T ss_pred eEEEEeEEEEe--------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC--CCCceEEEECCEECCCCCH
Confidence 69999999998 3457999999999999999999999999999999999964 3568999999998742
Q ss_pred -h-ccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHH
Q 004537 226 -S-LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (746)
Q Consensus 226 -~-~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqR 303 (746)
. .++.++||+|++.+++.+||+||+.+.... ....+++++++++.+||.+..+.. +..||||||||
T Consensus 81 ~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~-------~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qr 148 (510)
T PRK15439 81 AKAHQLGIYLVPQEPLLFPNLSVKENILFGLPK-------RQASMQKMKQLLAALGCQLDLDSS-----AGSLEVADRQI 148 (510)
T ss_pred HHHHhCCEEEEeccCccCCCCcHHHHhhccccc-------chHHHHHHHHHHHHcCCCccccCC-----hhhCCHHHHHH
Confidence 1 235699999999999999999999885321 123446788999999998776654 46899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHH
Q 004537 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (746)
Q Consensus 304 v~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 383 (746)
|+|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+.+.||+|++|++|++++.|+++++
T Consensus 149 v~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 227 (510)
T PRK15439 149 VEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLP-EIRQLADRISVMRDGTIALSGKTADL 227 (510)
T ss_pred HHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEecChHHc
Confidence 99999999999999999999999999999999999999888999999999975 47788999999999999999998765
Q ss_pred H
Q 004537 384 M 384 (746)
Q Consensus 384 ~ 384 (746)
.
T Consensus 228 ~ 228 (510)
T PRK15439 228 S 228 (510)
T ss_pred C
Confidence 3
|
|
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-40 Score=334.54 Aligned_cols=191 Identities=52% Similarity=0.894 Sum_probs=164.8
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh-hc
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-SL 227 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~-~~ 227 (746)
.++++||+++|.... ...++++|+|+|+++++||+++|+||||||||||+++|+|....++.+|+|.++|+++.. ..
T Consensus 3 ~l~~~~ls~~~~~~~--~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~ 80 (194)
T cd03213 3 TLSFRNLTVTVKSSP--SKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSF 80 (194)
T ss_pred EEEEEeeEEEEecCC--CcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhh
Confidence 489999999983210 011367999999999999999999999999999999999954113568999999998864 45
Q ss_pred cCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHH
Q 004537 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (746)
Q Consensus 228 ~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA 307 (746)
++.++|++|++.+++.+|++||+.+.... ..||||||||++||
T Consensus 81 ~~~i~~~~q~~~~~~~~t~~~~i~~~~~~-------------------------------------~~LS~G~~qrv~la 123 (194)
T cd03213 81 RKIIGYVPQDDILHPTLTVRETLMFAAKL-------------------------------------RGLSGGERKRVSIA 123 (194)
T ss_pred hheEEEccCcccCCCCCcHHHHHHHHHHh-------------------------------------ccCCHHHHHHHHHH
Confidence 67899999999999989999999864210 05999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEec
Q 004537 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (746)
Q Consensus 308 ~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G 378 (746)
|+|+.+|++++|||||+|||+.++..+.+.|+++.++|+|+|+++|++..++.+.||++++|++|++++.|
T Consensus 124 ral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~ 194 (194)
T cd03213 124 LELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194 (194)
T ss_pred HHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence 99999999999999999999999999999999998779999999999865577889999999999998765
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-40 Score=340.48 Aligned_cols=210 Identities=30% Similarity=0.508 Sum_probs=179.2
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh----
Q 004537 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (746)
++++|+++.|..+ .+++.+|+|+||++++|++++|+||||||||||+++|+|.. ++.+|+|.++|+++..
T Consensus 2 l~~~~l~~~~~~~----~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~--~~~~G~i~~~g~~~~~~~~~ 75 (220)
T TIGR02982 2 ISIRNLNHYYGHG----SLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLR--SVQEGSLKVLGQELYGASEK 75 (220)
T ss_pred EEEEEEEEEccCC----CcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC--CCCCeEEEECCEEhHhcCHh
Confidence 7899999988311 11367999999999999999999999999999999999954 3568999999998742
Q ss_pred ---hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHH
Q 004537 226 ---SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (746)
Q Consensus 226 ---~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerq 302 (746)
..++.++|++|++.+++.+|+.||+.++..... ....++..+++.++++.+||.+..++. ++.|||||||
T Consensus 76 ~~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~lS~G~~q 148 (220)
T TIGR02982 76 ELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQP--NLSYQEARERARAMLEAVGLGDHLDYY-----PHNLSGGQKQ 148 (220)
T ss_pred HHHHHHhheEEEcCChhhcCCCCHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCChhhhhcC-----hhhCCHHHHH
Confidence 245789999999999998999999998754321 133445566789999999998766654 4689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCChHHHhccCEEEEEeCCeE
Q 004537 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (746)
Q Consensus 303 Rv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~-~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~i 374 (746)
|++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ .|+|||+++|++. +.+.||++++|++|++
T Consensus 149 rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~--~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 149 RVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNR--ILDVADRIVHMEDGKL 219 (220)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH--HHhhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999976 4899999999975 4589999999999986
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=338.14 Aligned_cols=198 Identities=28% Similarity=0.505 Sum_probs=169.5
Q ss_pred EEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCC---h---
Q 004537 152 FTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---K--- 225 (746)
Q Consensus 152 ~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~---~--- 225 (746)
++||++.| +++++|+|+||++++||+++|+||||||||||+++|+|.. ++.+|+|.++|+++. .
T Consensus 1 i~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~--~~~~G~i~~~g~~~~~~~~~~~ 70 (206)
T TIGR03608 1 LKNISKKF--------GDKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLE--KFDSGQVYLNGKETPPLNSKKA 70 (206)
T ss_pred CcceEEEE--------CCEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCC--CCCCeEEEECCEEccccchhhH
Confidence 36888888 2457999999999999999999999999999999999964 346899999999853 1
Q ss_pred --hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHH
Q 004537 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (746)
Q Consensus 226 --~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqR 303 (746)
..++.++|++|++.+++.+|++||+.+..... ...+.+..++++++++.+||++..++. +++||||||||
T Consensus 71 ~~~~~~~i~~~~q~~~~~~~~t~~e~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~lS~G~~qr 142 (206)
T TIGR03608 71 SKFRREKLGYLFQNFALIENETVEENLDLGLKYK---KLSKKEKREKKKEALEKVGLNLKLKQK-----IYELSGGEQQR 142 (206)
T ss_pred HHHHHhCeeEEecchhhccCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCchhhhcCC-----hhhCCHHHHHH
Confidence 23568999999999999899999999875432 223445566788999999998766654 46899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEE
Q 004537 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL 369 (746)
Q Consensus 304 v~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL 369 (746)
++|||+|+.+|++|||||||+|||+.++..+.+.|+++.++|+|+|+++|++. ..+.||++++|
T Consensus 143 ~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~--~~~~~d~i~~l 206 (206)
T TIGR03608 143 VALARAILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPE--VAKQADRVIEL 206 (206)
T ss_pred HHHHHHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--HHhhcCEEEeC
Confidence 99999999999999999999999999999999999999877999999999975 34689999875
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-40 Score=349.54 Aligned_cols=221 Identities=22% Similarity=0.356 Sum_probs=181.3
Q ss_pred ceEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCC-C--CCccEEEECCEeCC
Q 004537 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-P--TVGGSITYNDHPYS 224 (746)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~-~--~~~G~I~~~G~~~~ 224 (746)
..|+++||+++| +++.+|+|+|++|++||+++|+||||||||||+++|+|.... + +.+|+|.++|+++.
T Consensus 19 ~~l~~~nl~~~~--------~~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~ 90 (274)
T PRK14265 19 SVFEVEGVKVFY--------GGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIY 90 (274)
T ss_pred ceEEEeeEEEEe--------CCeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecc
Confidence 369999999998 235799999999999999999999999999999999996432 1 25899999999873
Q ss_pred h------hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCH
Q 004537 225 K------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSG 298 (746)
Q Consensus 225 ~------~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSG 298 (746)
. .+++.|+|++|++.+++. ||.||+.++...+. ... ..++.+.+.++.+++.+..... -+..+..|||
T Consensus 91 ~~~~~~~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~~~~~---~~~-~~~~~~~~~l~~~~l~~~l~~~-~~~~~~~LSg 164 (274)
T PRK14265 91 DSQINSVKLRRQVGMVFQRPNPFPK-SIYENIAFAPRANG---YKG-NLDELVEDSLRRAAIWEEVKDK-LKEKGTALSG 164 (274)
T ss_pred cccchhHHHhhcEEEEccCCccccc-cHHHHHHhHHHhcC---chH-HHHHHHHHHHHHcccchhhHHH-hcCCcccCCH
Confidence 1 346789999999998874 99999998653221 111 2234466778887774221111 1234578999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEe--------
Q 004537 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG-------- 370 (746)
Q Consensus 299 GerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~-------- 370 (746)
||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|++. .+.+.||++++|+
T Consensus 165 Gq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~~~~~~~~ 242 (274)
T PRK14265 165 GQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE-QYTIIMVTHNMQ-QASRVADWTAFFNTEIDEYGK 242 (274)
T ss_pred HHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEecccccccc
Confidence 999999999999999999999999999999999999999999975 789999999975 5778999999998
Q ss_pred -CCeEEEecCHHHHH
Q 004537 371 -KGSLLYFGKASEAM 384 (746)
Q Consensus 371 -~G~iv~~G~~~~~~ 384 (746)
+|++++.|+++++.
T Consensus 243 ~~G~~~~~g~~~~~~ 257 (274)
T PRK14265 243 RRGKLVEFSPTEQMF 257 (274)
T ss_pred cCceEEEeCCHHHHH
Confidence 89999999998874
|
|
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-40 Score=350.47 Aligned_cols=221 Identities=24% Similarity=0.419 Sum_probs=182.1
Q ss_pred ceEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCC---CCCccEEEECCEeCC
Q 004537 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME---PTVGGSITYNDHPYS 224 (746)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~---~~~~G~I~~~G~~~~ 224 (746)
..|+++||+++| +++.+|+|+||+|++||+++|+||||||||||+++|+|.... .+.+|+|.++|+++.
T Consensus 38 ~~l~i~~l~~~~--------~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~ 109 (285)
T PRK14254 38 TVIEARDLNVFY--------GDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVY 109 (285)
T ss_pred ceEEEEEEEEEE--------CCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEcc
Confidence 369999999998 235799999999999999999999999999999999996531 146899999998863
Q ss_pred h------hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCH
Q 004537 225 K------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSG 298 (746)
Q Consensus 225 ~------~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSG 298 (746)
. ..++.++|++|++.+++. ||+||+.+...... ... ...++++++++.++|.+...... +..+..|||
T Consensus 110 ~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~---~~~-~~~~~~~~~l~~~~l~~~i~~~~-~~~~~~LSg 183 (285)
T PRK14254 110 DADVDPVALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQG---YDG-DIDERVEESLRRAALWDEVKDQL-DSSGLDLSG 183 (285)
T ss_pred ccccchHhhhccEEEEecCCccCcC-CHHHHHHHHHHHcC---CcH-HHHHHHHHHHHHcCCCchhHHHH-hCCcccCCH
Confidence 1 346789999999988885 99999998754321 122 33456888999998853211111 234578999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEE-EEeCCeEEEe
Q 004537 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLI-LLGKGSLLYF 377 (746)
Q Consensus 299 GerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~-vL~~G~iv~~ 377 (746)
||||||+|||+|+.+|+||||||||+|||+.++..+.+.|+++++ ++|||+++|++. .+.+.||+++ +|++|++++.
T Consensus 184 Ge~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~-~~tiii~tH~~~-~i~~~~dri~v~l~~G~i~~~ 261 (285)
T PRK14254 184 GQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAE-EYTVVIVTHNMQ-QAARISDKTAVFLTGGELVEF 261 (285)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHhhcCEEEEEeeCCEEEEe
Confidence 999999999999999999999999999999999999999999976 489999999975 5677899975 6799999999
Q ss_pred cCHHHHH
Q 004537 378 GKASEAM 384 (746)
Q Consensus 378 G~~~~~~ 384 (746)
|+++++.
T Consensus 262 g~~~~~~ 268 (285)
T PRK14254 262 DDTDKIF 268 (285)
T ss_pred CCHHHHH
Confidence 9988763
|
|
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-40 Score=350.48 Aligned_cols=226 Identities=24% Similarity=0.451 Sum_probs=185.7
Q ss_pred eEEEEeEEEEEeecccc-ccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh--
Q 004537 149 YLKFTDVTYKVILKGMT-SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~-~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (746)
.|+++||+++|...+.. ...++.+|+|+||+|++||+++|+||||||||||+++|+|.. ++.+|+|.++|.++..
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~--~p~sG~i~~~g~~~~~~~ 80 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLE--SPSQGNVSWRGEPLAKLN 80 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC--CCCCcEEEECCEeccccC
Confidence 48999999998310000 001367999999999999999999999999999999999954 3468999999998642
Q ss_pred -----hccCcEEEEecCC--cCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCC-ccccccccCccccCCC
Q 004537 226 -----SLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVS 297 (746)
Q Consensus 226 -----~~~~~i~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LS 297 (746)
.+++.++|++|++ .+++..|+.||+.+..... .....++..++++++++.+|+. +..++ .++.||
T Consensus 81 ~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~~LS 153 (268)
T PRK10419 81 RAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHL--LSLDKAERLARASEMLRAVDLDDSVLDK-----RPPQLS 153 (268)
T ss_pred hhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhh--ccCCHHHHHHHHHHHHHHcCCChhHhhC-----CCccCC
Confidence 2467899999997 4667789999997754211 1123445556789999999996 34454 346899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEE
Q 004537 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (746)
Q Consensus 298 GGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~ 376 (746)
||||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |+|+|++||++. .+.+.||++++|++|++++
T Consensus 154 ~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~-~i~~~~d~i~~l~~G~i~~ 232 (268)
T PRK10419 154 GGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLR-LVERFCQRVMVMDNGQIVE 232 (268)
T ss_pred hHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHH-HHHHhCCEEEEEECCEEee
Confidence 99999999999999999999999999999999999999999999765 899999999975 5667899999999999999
Q ss_pred ecCHHHHH
Q 004537 377 FGKASEAM 384 (746)
Q Consensus 377 ~G~~~~~~ 384 (746)
.|+++++.
T Consensus 233 ~g~~~~~~ 240 (268)
T PRK10419 233 TQPVGDKL 240 (268)
T ss_pred eCChhhcc
Confidence 99998864
|
|
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-40 Score=347.57 Aligned_cols=222 Identities=20% Similarity=0.322 Sum_probs=185.1
Q ss_pred CceEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCC---CCccEEEECCEeC
Q 004537 147 PIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP---TVGGSITYNDHPY 223 (746)
Q Consensus 147 ~~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~---~~~G~I~~~G~~~ 223 (746)
++.+.++++++.| +++.+|+|+||++++||+++|+||||||||||+++|+|..... +.+|+|.++|+++
T Consensus 6 ~~~~~~~~~~~~~--------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i 77 (261)
T PRK14263 6 PIVMDCKLDKIFY--------GNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDV 77 (261)
T ss_pred CceEEEEeEEEEe--------CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEec
Confidence 3468999999887 3467999999999999999999999999999999999965320 2589999999987
Q ss_pred Ch------hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCC
Q 004537 224 SK------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVS 297 (746)
Q Consensus 224 ~~------~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS 297 (746)
.. .+++.++|++|++.++ .+|+.||+.++...+. . ..+..++++++++.++|.+..+... +..++.||
T Consensus 78 ~~~~~~~~~~~~~i~~v~q~~~~~-~~tv~enl~~~~~~~~---~-~~~~~~~~~~~l~~~~l~~~i~~~~-~~~~~~LS 151 (261)
T PRK14263 78 YGKGVDPVVVRRYIGMVFQQPNPF-SMSIFDNVAFGLRLNR---Y-KGDLGDRVKHALQGAALWDEVKDKL-KVSGLSLS 151 (261)
T ss_pred cccccchHhhhhceEEEecCCccc-cccHHHHHHHHHhhcC---c-hHHHHHHHHHHHHHcCCchhhhhhh-hCCcccCC
Confidence 42 3467799999999888 4899999998764321 1 2233467888999999865332222 23457899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEe-------
Q 004537 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG------- 370 (746)
Q Consensus 298 GGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~------- 370 (746)
||||||++|||||+.+|++|||||||+|||+.++.++.+.|+++.+ ++|+|+++|++. ++.+.||++++|+
T Consensus 152 ~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~-~~tii~isH~~~-~i~~~~d~v~~l~~~~~~~~ 229 (261)
T PRK14263 152 GGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKK-DYTIALVTHNMQ-QAIRVADTTAFFSVDISQGT 229 (261)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEeccccccc
Confidence 9999999999999999999999999999999999999999999964 799999999975 4778899999996
Q ss_pred -CCeEEEecCHHHHH
Q 004537 371 -KGSLLYFGKASEAM 384 (746)
Q Consensus 371 -~G~iv~~G~~~~~~ 384 (746)
+|++++.|+++++.
T Consensus 230 ~~G~i~~~g~~~~~~ 244 (261)
T PRK14263 230 RTGYLVEMGPTAQIF 244 (261)
T ss_pred CCceEEEeCCHHHHH
Confidence 89999999998865
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-40 Score=370.53 Aligned_cols=228 Identities=27% Similarity=0.444 Sum_probs=196.6
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCC--CccEEEECCEeCCh-
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPT--VGGSITYNDHPYSK- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~--~~G~I~~~G~~~~~- 225 (746)
.|+++||+..|... .+...+++||||++.+||++||+|.|||||||+.++|.|.+..+. .+|+|.++|.++..
T Consensus 5 lL~V~nL~v~~~~~----~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l 80 (539)
T COG1123 5 LLEVENLTVEFATD----GGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGL 80 (539)
T ss_pred eEEEeceEEEEecC----CcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcC
Confidence 69999999999543 233579999999999999999999999999999999999765431 47999999997631
Q ss_pred ------h-ccCcEEEEecCC--cCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCC
Q 004537 226 ------S-LKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGV 296 (746)
Q Consensus 226 ------~-~~~~i~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~L 296 (746)
. ..++|+||||++ .|-|-+||.+.+.=...... ..+.++.++++.++++.+||++.... +.++++|
T Consensus 81 ~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~--~~~~~ea~~~a~elL~~Vgl~~~~~~---~~yPheL 155 (539)
T COG1123 81 SEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHG--KGSRAEARKRAVELLEQVGLPDPERR---DRYPHQL 155 (539)
T ss_pred CHHHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHcCCCChhhh---ccCCccc
Confidence 1 236799999997 46777899988876655443 23477888899999999999986654 5689999
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCChHHHhccCEEEEEeCCeEE
Q 004537 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLL 375 (746)
Q Consensus 297 SGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~-~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv 375 (746)
||||||||.||+||+.+|++||+||||++||+.++.+|+++|+++.+ .|.++|+||||+. -+.++||||+||++|+++
T Consensus 156 SGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~-Vva~~aDrv~Vm~~G~iV 234 (539)
T COG1123 156 SGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLG-VVAELADRVVVMYKGEIV 234 (539)
T ss_pred CchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHH-HHHHhcCeEEEEECCEEE
Confidence 99999999999999999999999999999999999999999999985 4999999999986 578999999999999999
Q ss_pred EecCHHHHHHH
Q 004537 376 YFGKASEAMAY 386 (746)
Q Consensus 376 ~~G~~~~~~~~ 386 (746)
+.|+++++++-
T Consensus 235 E~G~~~~i~~~ 245 (539)
T COG1123 235 ETGPTEEILSN 245 (539)
T ss_pred EecCHHHHHhc
Confidence 99999999764
|
|
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-40 Score=344.08 Aligned_cols=229 Identities=27% Similarity=0.347 Sum_probs=181.4
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh----
Q 004537 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (746)
++++||++.| +++++|+|+|++|++|++++|+||||||||||+++|+|....++.+|+|.++|+++..
T Consensus 2 i~~~nl~~~~--------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~ 73 (248)
T PRK09580 2 LSIKDLHVSV--------EDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPE 73 (248)
T ss_pred eEEEEEEEEe--------CCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHH
Confidence 7899999998 2457999999999999999999999999999999999964213568999999987642
Q ss_pred h-ccCcEEEEecCCcCCCCCCHHHHHHHHHh-ccC--C-CCCcHHHHHHHHHHHHHHcCCCc-cccccccCccccCCCHH
Q 004537 226 S-LKSKIGFVTQDDVLFPHLTVKETLTYAAL-LRL--P-NTLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVRGVSGG 299 (746)
Q Consensus 226 ~-~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~-~~~--~-~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSGG 299 (746)
. .++.++|++|++.+++.+|+.+++.+... .+. . .........+.+++.++.+++++ ..+..+ .+.||||
T Consensus 74 ~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~----~~~LS~G 149 (248)
T PRK09580 74 DRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSV----NVGFSGG 149 (248)
T ss_pred HHhhcceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCC----CCCCCHH
Confidence 1 23569999999998888888777654321 110 0 01112233456788899999963 333322 1369999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhc-cCEEEEEeCCeEEEec
Q 004537 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHK-FDKLILLGKGSLLYFG 378 (746)
Q Consensus 300 erqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~-~D~i~vL~~G~iv~~G 378 (746)
|||||+|||+|+.+|++|+|||||+|||+.++..+.+.|+++++.|+|||++||++. .+... +|++++|++|++++.|
T Consensus 150 ~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~-~~~~~~~d~i~~l~~g~i~~~g 228 (248)
T PRK09580 150 EKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQR-ILDYIKPDYVHVLYQGRIVKSG 228 (248)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHhhhCCEEEEEECCeEEEeC
Confidence 999999999999999999999999999999999999999999877899999999975 35454 8999999999999999
Q ss_pred CHHHHHHHHHhcCC
Q 004537 379 KASEAMAYFSSIGC 392 (746)
Q Consensus 379 ~~~~~~~~f~~~G~ 392 (746)
+++.+ ..++..++
T Consensus 229 ~~~~~-~~~~~~~~ 241 (248)
T PRK09580 229 DFTLV-KQLEEQGY 241 (248)
T ss_pred CHHHH-HHHHhcCC
Confidence 98854 44554443
|
|
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-41 Score=346.47 Aligned_cols=215 Identities=31% Similarity=0.509 Sum_probs=174.3
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh----
Q 004537 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (746)
++++|++++|. ..++.+|+|+||++++||+++|+||||||||||+++|+|.. ++.+|+|.++|+++..
T Consensus 1 i~~~~l~~~~~------~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~--~p~~G~i~~~g~~~~~~~~~ 72 (234)
T cd03251 1 VEFKNVTFRYP------GDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFY--DVDSGRILIDGHDVRDYTLA 72 (234)
T ss_pred CEEEEEEEEeC------CCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccc--cCCCCEEEECCEEhhhCCHH
Confidence 47899999982 12236999999999999999999999999999999999964 3568999999988642
Q ss_pred hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHH-----HHHHHHHHHHc--CCCccccccccCccccCCCH
Q 004537 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQK-----EKRAIDVINEL--GLERCQDTMIGGSFVRGVSG 298 (746)
Q Consensus 226 ~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~-----~~~v~~~l~~l--gL~~~~~~~vg~~~~~~LSG 298 (746)
..++.++|++|++.+++ .||+||+.+.... ...... ...+.+.++.+ ++.+..+ ..+..|||
T Consensus 73 ~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-----~~~~~LS~ 141 (234)
T cd03251 73 SLRRQIGLVSQDVFLFN-DTVAENIAYGRPG-----ATREEVEEAARAANAHEFIMELPEGYDTVIG-----ERGVKLSG 141 (234)
T ss_pred HHHhhEEEeCCCCeecc-ccHHHHhhccCCC-----CCHHHHHHHHHHcCcHHHHHhcccCcceeec-----cCCCcCCH
Confidence 34677999999999887 6999999875321 111111 11234555555 4443333 34578999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEec
Q 004537 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (746)
Q Consensus 299 GerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G 378 (746)
|||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++.+ |+|||++||++.. +. .||++++|++|++++.|
T Consensus 142 G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~-~~-~~d~v~~l~~G~i~~~~ 218 (234)
T cd03251 142 GQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLMK-NRTTFVIAHRLST-IE-NADRIVVLEDGKIVERG 218 (234)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEecCHHH-Hh-hCCEEEEecCCeEeeeC
Confidence 999999999999999999999999999999999999999999964 8999999999864 54 49999999999999999
Q ss_pred CHHHHHHH
Q 004537 379 KASEAMAY 386 (746)
Q Consensus 379 ~~~~~~~~ 386 (746)
+++++.+.
T Consensus 219 ~~~~~~~~ 226 (234)
T cd03251 219 THEELLAQ 226 (234)
T ss_pred CHHHHHHc
Confidence 98887543
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=322.30 Aligned_cols=220 Identities=29% Similarity=0.490 Sum_probs=190.6
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCChhcc
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~ 228 (746)
.+..++++.+|+. ....+|+|+|++|.+||.++++||||||||||||+++|... +..|+|.+||++++.. -
T Consensus 3 ~l~~~~~sl~y~g------~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~--P~~G~i~l~~r~i~gP-g 73 (259)
T COG4525 3 MLNVSHLSLSYEG------KPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVT--PSRGSIQLNGRRIEGP-G 73 (259)
T ss_pred eeehhheEEecCC------cchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcC--cccceEEECCEeccCC-C
Confidence 4667888888832 22569999999999999999999999999999999999543 4689999999998632 2
Q ss_pred CcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHHH
Q 004537 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGN 308 (746)
Q Consensus 229 ~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~ 308 (746)
..-|.|+|++.|+|.+||.||+.|+.+++ .+.++++.+++.+.+..+||.+..+. ++.+|||||||||.|||
T Consensus 74 aergvVFQ~~~LlPWl~~~dNvafgL~l~---Gi~k~~R~~~a~q~l~~VgL~~~~~~-----~i~qLSGGmrQRvGiAR 145 (259)
T COG4525 74 AERGVVFQNEALLPWLNVIDNVAFGLQLR---GIEKAQRREIAHQMLALVGLEGAEHK-----YIWQLSGGMRQRVGIAR 145 (259)
T ss_pred ccceeEeccCccchhhHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHhCccccccc-----ceEeecchHHHHHHHHH
Confidence 23489999999999999999999999876 47889999999999999999987664 45789999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCChHHHhccCEEEEEeC--CeEEEecCHHHHHH
Q 004537 309 EIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGK--GSLLYFGKASEAMA 385 (746)
Q Consensus 309 aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~-~g~Tvi~~~H~~~~~i~~~~D~i~vL~~--G~iv~~G~~~~~~~ 385 (746)
||+.+|++|+||||+++||.-+++++.++|-++++ .|+.++++||+..+ ..-++++++||+. |||+..=+++-..+
T Consensus 146 ALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieE-AlflatrLvvlsp~pgRvv~~~~~df~rR 224 (259)
T COG4525 146 ALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEE-ALFLATRLVVLSPGPGRVVERLPLDFARR 224 (259)
T ss_pred HhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHH-HHhhhheeEEecCCCceeeEecCCCHHHH
Confidence 99999999999999999999999999999999876 49999999999875 4557999999985 79998877764333
Q ss_pred H
Q 004537 386 Y 386 (746)
Q Consensus 386 ~ 386 (746)
|
T Consensus 225 ~ 225 (259)
T COG4525 225 Y 225 (259)
T ss_pred h
Confidence 3
|
|
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=344.68 Aligned_cols=201 Identities=31% Similarity=0.470 Sum_probs=171.1
Q ss_pred eeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEecCCcCCCCCCHHHHHHH
Q 004537 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTY 252 (746)
Q Consensus 173 L~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~ 252 (746)
|+|+|++|++||+++|+||||||||||+++|+|.. ++.+|+|.++|+++... ....+|++|++.+++.+||+||+.+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~--~p~~G~i~~~g~~~~~~-~~~~~~v~q~~~l~~~~tv~e~l~~ 77 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLA--QPTSGGVILEGKQITEP-GPDRMVVFQNYSLLPWLTVRENIAL 77 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC--CCCCceEEECCEECCCC-ChhheEEecCcccCCCCCHHHHHHH
Confidence 58999999999999999999999999999999964 35689999999987532 2235899999999998999999988
Q ss_pred HHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 004537 253 AALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTAL 332 (746)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~ 332 (746)
......+ ...+.+..+++.++++.+||++..++. +.+||||||||++|||+|+.+|++|||||||+|||+.++.
T Consensus 78 ~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~ 151 (230)
T TIGR01184 78 AVDRVLP-DLSKSERRAIVEEHIALVGLTEAADKR-----PGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRG 151 (230)
T ss_pred HHHhccc-CCCHHHHHHHHHHHHHHcCCHHHHcCC-----hhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHH
Confidence 6421111 233445556788999999998766654 4689999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHH
Q 004537 333 RIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (746)
Q Consensus 333 ~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 383 (746)
.+.+.|++++++ |+|||++||++. ++.+.||++++|++|++++.|+..++
T Consensus 152 ~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~ 202 (230)
T TIGR01184 152 NLQEELMQIWEEHRVTVLMVTHDVD-EALLLSDRVVMLTNGPAANIGQILEV 202 (230)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEeCCcEecccCceec
Confidence 999999999765 899999999975 57788999999999999998865543
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-42 Score=434.30 Aligned_cols=215 Identities=23% Similarity=0.400 Sum_probs=182.2
Q ss_pred ceEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCC---
Q 004537 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS--- 224 (746)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~--- 224 (746)
..|+|+||+|+|. .+.+.+|+||||+|+|||.+||+|+||||||||+++|.| ++++ .+|+|.+||+|+.
T Consensus 1307 G~I~f~nVsf~Y~------~~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlr-l~~p-~~G~I~IDG~di~~i~ 1378 (1560)
T PTZ00243 1307 GSLVFEGVQMRYR------EGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMR-MVEV-CGGEIRVNGREIGAYG 1378 (1560)
T ss_pred CeEEEEEEEEEeC------CCCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhC-CCCC-CCcEEEECCEEcccCC
Confidence 3699999999993 233469999999999999999999999999999999996 4544 5899999999986
Q ss_pred -hhccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCC-------CccccccccCccccCC
Q 004537 225 -KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL-------ERCQDTMIGGSFVRGV 296 (746)
Q Consensus 225 -~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~vg~~~~~~L 296 (746)
+.+|++|+|||||+.+|+. ||+|||.... ..++ +.+.++++..++ ++..||.+|+. ...|
T Consensus 1379 l~~LR~~I~iVpQdp~LF~g-TIreNIdp~~------~~sd----eeI~~Al~~a~l~~~I~~lp~Gldt~vge~-G~nL 1446 (1560)
T PTZ00243 1379 LRELRRQFSMIPQDPVLFDG-TVRQNVDPFL------EASS----AEVWAALELVGLRERVASESEGIDSRVLEG-GSNY 1446 (1560)
T ss_pred HHHHHhcceEECCCCccccc-cHHHHhCccc------CCCH----HHHHHHHHHCCChHHHhhCcccccccccCC-cCcC
Confidence 3678999999999999975 9999996421 2232 334455554443 56789999864 3569
Q ss_pred CHHHHHHHHHHHHHhhC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEE
Q 004537 297 SGGERKRVCIGNEIIIN-PSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLL 375 (746)
Q Consensus 297 SGGerqRv~IA~aL~~~-p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv 375 (746)
|||||||++|||||+++ |+|||||||||+||+++...|.+.|++.. +++|||+|+|+++. ...||+|++|++|+|+
T Consensus 1447 SgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~-~~~TvI~IAHRl~t--i~~~DrIlVLd~G~Vv 1523 (1560)
T PTZ00243 1447 SVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAF-SAYTVITIAHRLHT--VAQYDKIIVMDHGAVA 1523 (1560)
T ss_pred CHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHC-CCCEEEEEeccHHH--HHhCCEEEEEECCEEE
Confidence 99999999999999996 89999999999999999999999999864 48999999999864 5779999999999999
Q ss_pred EecCHHHHHH
Q 004537 376 YFGKASEAMA 385 (746)
Q Consensus 376 ~~G~~~~~~~ 385 (746)
+.|+|+|+++
T Consensus 1524 E~Gt~~eLl~ 1533 (1560)
T PTZ00243 1524 EMGSPRELVM 1533 (1560)
T ss_pred EECCHHHHHh
Confidence 9999999874
|
|
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-40 Score=348.37 Aligned_cols=220 Identities=21% Similarity=0.378 Sum_probs=181.4
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCC-C--CCccEEEECCEeCC-
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-P--TVGGSITYNDHPYS- 224 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~-~--~~~G~I~~~G~~~~- 224 (746)
.|+++||+++| +++++|+|+|++|++||+++|+||||||||||+|+|+|.... + +.+|+|.++|+++.
T Consensus 10 ~l~i~~v~~~~--------~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~ 81 (264)
T PRK14243 10 VLRTENLNVYY--------GSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYA 81 (264)
T ss_pred EEEEeeeEEEE--------CCEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccc
Confidence 59999999998 235799999999999999999999999999999999995431 1 25899999998863
Q ss_pred -----hhccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHH
Q 004537 225 -----KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (746)
Q Consensus 225 -----~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGG 299 (746)
...++.++|++|++.+++ .||+||+.+..... ... ....++++++++.+++.+..+.. -+..+..||||
T Consensus 82 ~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~---~~~-~~~~~~~~~~l~~~~l~~~l~~~-~~~~~~~LSgG 155 (264)
T PRK14243 82 PDVDPVEVRRRIGMVFQKPNPFP-KSIYDNIAYGARIN---GYK-GDMDELVERSLRQAALWDEVKDK-LKQSGLSLSGG 155 (264)
T ss_pred cccChHHHhhhEEEEccCCcccc-ccHHHHHHhhhhhc---Ccc-hHHHHHHHHHHHHhCchhhHHHH-hcCCcccCCHH
Confidence 134677999999998887 49999999875422 111 12335566778887774321111 12345689999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEe---------
Q 004537 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG--------- 370 (746)
Q Consensus 300 erqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~--------- 370 (746)
||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|++. ++.+.||++++|+
T Consensus 156 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tvi~vtH~~~-~~~~~~d~v~~l~~~~~~~~~~ 233 (264)
T PRK14243 156 QQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE-QYTIIIVTHNMQ-QAARVSDMTAFFNVELTEGGGR 233 (264)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhCCEEEEEeccccccccc
Confidence 99999999999999999999999999999999999999999976 589999999975 5789999999998
Q ss_pred CCeEEEecCHHHHH
Q 004537 371 KGSLLYFGKASEAM 384 (746)
Q Consensus 371 ~G~iv~~G~~~~~~ 384 (746)
+|++++.|+++++.
T Consensus 234 ~g~i~~~~~~~~~~ 247 (264)
T PRK14243 234 YGYLVEFDRTEKIF 247 (264)
T ss_pred CceEEEeCCHHHHH
Confidence 79999999998874
|
|
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-40 Score=346.69 Aligned_cols=216 Identities=30% Similarity=0.497 Sum_probs=171.8
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh----
Q 004537 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (746)
++++|+++.|.. ..++++|+|+||++++||+++|+||||||||||+++|+|.. ++.+|+|.++|.++..
T Consensus 1 l~i~~l~~~~~~-----~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~--~~~~G~i~~~g~~~~~~~~~ 73 (238)
T cd03249 1 IEFKNVSFRYPS-----RPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFY--DPTSGEILLDGVDIRDLNLR 73 (238)
T ss_pred CeEEEEEEecCC-----CCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccC--CCCCCEEEECCEehhhcCHH
Confidence 468999998821 12357999999999999999999999999999999999954 3568999999988642
Q ss_pred hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHH-----HHHHHHHHc--CCCccccccccCccccCCCH
Q 004537 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEK-----RAIDVINEL--GLERCQDTMIGGSFVRGVSG 298 (746)
Q Consensus 226 ~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~-----~v~~~l~~l--gL~~~~~~~vg~~~~~~LSG 298 (746)
..++.++|++|++.+++ .||+||+.+..... ..+...+ .+.+.++.+ ++....+ ..++.|||
T Consensus 74 ~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~~~LS~ 142 (238)
T cd03249 74 WLRSQIGLVSQEPVLFD-GTIAENIRYGKPDA-----TDEEVEEAAKKANIHDFIMSLPDGYDTLVG-----ERGSQLSG 142 (238)
T ss_pred HHHhhEEEECCchhhhh-hhHHHHhhccCCCC-----CHHHHHHHHHHcChHHHHHhhccccceeec-----cCCccCCH
Confidence 23567999999998886 69999998753211 1111111 122233333 2322222 34578999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEec
Q 004537 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (746)
Q Consensus 299 GerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G 378 (746)
||||||+|||+|+.+|++|+|||||+|||+.++..+.+.|+++. +|+|||++||++.. + ..||++++|++|++++.|
T Consensus 143 G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~~~-~-~~~d~v~~l~~G~i~~~~ 219 (238)
T cd03249 143 GQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRLST-I-RNADLIAVLQNGQVVEQG 219 (238)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHH-H-hhCCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999999999999999987 69999999999764 5 479999999999999999
Q ss_pred CHHHHHHH
Q 004537 379 KASEAMAY 386 (746)
Q Consensus 379 ~~~~~~~~ 386 (746)
+.+++.++
T Consensus 220 ~~~~~~~~ 227 (238)
T cd03249 220 THDELMAQ 227 (238)
T ss_pred CHHHHhhc
Confidence 98887654
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-40 Score=344.69 Aligned_cols=218 Identities=25% Similarity=0.423 Sum_probs=179.8
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEe-----C
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP-----Y 223 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~-----~ 223 (746)
.|+++||+++| +++.+|+|+|++|++||+++|+||||||||||+++|+|.. ++.+|+|.++|++ +
T Consensus 3 ~l~~~~l~~~~--------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~--~~~~G~i~~~g~~~~~~~~ 72 (253)
T TIGR02323 3 LLQVSGLSKSY--------GGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRL--APDHGTATYIMRSGAELEL 72 (253)
T ss_pred eEEEeeeEEEe--------CCceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCC--CCCCcEEEEeccccccccc
Confidence 58999999998 2356899999999999999999999999999999999954 3568999999976 4
Q ss_pred Ch----h----ccCcEEEEecCCc--CCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCc-cccccccCcc
Q 004537 224 SK----S----LKSKIGFVTQDDV--LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-CQDTMIGGSF 292 (746)
Q Consensus 224 ~~----~----~~~~i~yv~Q~~~--l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~ 292 (746)
.. . .++.++|++|++. +++.+|+.||+.+..... . .......++++.++++.+|+.+ ..++ .
T Consensus 73 ~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~-~-~~~~~~~~~~~~~~l~~l~l~~~~~~~-----~ 145 (253)
T TIGR02323 73 YQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAI-G-ARHYGNIRAAAHDWLEEVEIDPTRIDD-----L 145 (253)
T ss_pred ccCCHHHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHh-c-ccchHHHHHHHHHHHHHcCCChhhhhc-----C
Confidence 31 1 2356999999974 456679999997643211 1 0111234467889999999963 4454 3
Q ss_pred ccCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeC
Q 004537 293 VRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGK 371 (746)
Q Consensus 293 ~~~LSGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~ 371 (746)
++.|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++ |.|||+++|++. .+.+.||++++|++
T Consensus 146 ~~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~-~~~~~~d~~~~l~~ 224 (253)
T TIGR02323 146 PRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLG-VARLLAQRLLVMQQ 224 (253)
T ss_pred chhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEEC
Confidence 5689999999999999999999999999999999999999999999998764 899999999975 56678999999999
Q ss_pred CeEEEecCHHHHH
Q 004537 372 GSLLYFGKASEAM 384 (746)
Q Consensus 372 G~iv~~G~~~~~~ 384 (746)
|++++.|+++++.
T Consensus 225 G~i~~~~~~~~~~ 237 (253)
T TIGR02323 225 GRVVESGLTDQVL 237 (253)
T ss_pred CEEEEECCHHHHh
Confidence 9999999988764
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-40 Score=350.93 Aligned_cols=213 Identities=22% Similarity=0.382 Sum_probs=178.2
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (746)
.|+++||+++|. .++..+|+|+|++|++||+++|+||||||||||+++|+|.. + .+|+|.+||.++..
T Consensus 2 ~i~~~nls~~~~------~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~--~-~~G~I~i~g~~i~~~~~ 72 (275)
T cd03289 2 QMTVKDLTAKYT------EGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL--N-TEGDIQIDGVSWNSVPL 72 (275)
T ss_pred eEEEEEEEEEeC------CCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhc--C-CCcEEEECCEEhhhCCH
Confidence 488999999983 23456999999999999999999999999999999999865 2 47999999998742
Q ss_pred -hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccc-------cccCccccCCC
Q 004537 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDT-------MIGGSFVRGVS 297 (746)
Q Consensus 226 -~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~-------~vg~~~~~~LS 297 (746)
.+++.++||+|++.+|+. ||+||+.... ..+. +++.+.++.+||.+..+. .+++ ....||
T Consensus 73 ~~lr~~i~~v~q~~~lf~~-tv~~nl~~~~------~~~~----~~~~~~l~~~gL~~~~~~~p~~l~~~~~~-~g~~LS 140 (275)
T cd03289 73 QKWRKAFGVIPQKVFIFSG-TFRKNLDPYG------KWSD----EEIWKVAEEVGLKSVIEQFPGQLDFVLVD-GGCVLS 140 (275)
T ss_pred HHHhhhEEEECCCcccchh-hHHHHhhhcc------CCCH----HHHHHHHHHcCCHHHHHhCcccccceecC-CCCCCC
Confidence 457889999999999984 9999996421 1122 345667778887654443 3332 235699
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEe
Q 004537 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (746)
Q Consensus 298 GGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~ 377 (746)
||||||++|||||+.+|+||+|||||++||+.+...+.+.|+++. .++|||+++|++. .+ ..||+|++|++|++++.
T Consensus 141 ~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~-~~~tii~isH~~~-~i-~~~dri~vl~~G~i~~~ 217 (275)
T cd03289 141 HGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAF-ADCTVILSEHRIE-AM-LECQRFLVIEENKVRQY 217 (275)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhc-CCCEEEEEECCHH-HH-HhCCEEEEecCCeEeec
Confidence 999999999999999999999999999999999999999999875 4899999999974 45 45999999999999999
Q ss_pred cCHHHHHH
Q 004537 378 GKASEAMA 385 (746)
Q Consensus 378 G~~~~~~~ 385 (746)
|+++++++
T Consensus 218 g~~~~l~~ 225 (275)
T cd03289 218 DSIQKLLN 225 (275)
T ss_pred CCHHHHhh
Confidence 99999874
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=344.01 Aligned_cols=214 Identities=33% Similarity=0.520 Sum_probs=172.2
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (746)
.|+++|++++|. ..+.+|+|+|+++++||+++|+||||||||||+++|+|.. ++.+|+|.++|.++..
T Consensus 2 ~l~~~~l~~~~~-------~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~--~~~~G~i~~~g~~~~~~~~ 72 (229)
T cd03254 2 EIEFENVNFSYD-------EKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFY--DPQKGQILIDGIDIRDISR 72 (229)
T ss_pred eEEEEEEEEecC-------CCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCc--CCCCCEEEECCEeHHHcCH
Confidence 478999999882 1346999999999999999999999999999999999964 3568999999988742
Q ss_pred -hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccc-------cccccCccccCCC
Q 004537 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ-------DTMIGGSFVRGVS 297 (746)
Q Consensus 226 -~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-------~~~vg~~~~~~LS 297 (746)
.+++.++|++|++.+++. ||+||+.+.... ... .++.+.++.+++.+.. ++.. +..++.||
T Consensus 73 ~~~~~~i~~~~q~~~~~~~-tv~~~~~~~~~~-----~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~LS 141 (229)
T cd03254 73 KSLRSMIGVVLQDTFLFSG-TIMENIRLGRPN-----ATD----EEVIEAAKEAGAHDFIMKLPNGYDTVL-GENGGNLS 141 (229)
T ss_pred HHHhhhEEEecCCchhhhh-HHHHHHhccCCC-----CCH----HHHHHHHHHhChHHHHHhCcccccCHh-hcCCCcCC
Confidence 346779999999988875 999999875321 111 1223333333332221 1121 23357899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEe
Q 004537 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (746)
Q Consensus 298 GGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~ 377 (746)
|||||||+|||+|+.+|++|||||||+|||+.++..+++.|++++ +|+|||++||++.. + ..||++++|++|++++.
T Consensus 142 ~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~-~-~~~d~i~~l~~g~~~~~ 218 (229)
T cd03254 142 QGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLM-KGRTSIIIAHRLST-I-KNADKILVLDDGKIIEE 218 (229)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHHH-H-hhCCEEEEEeCCeEEEe
Confidence 999999999999999999999999999999999999999999986 48999999999753 4 56999999999999999
Q ss_pred cCHHHHHH
Q 004537 378 GKASEAMA 385 (746)
Q Consensus 378 G~~~~~~~ 385 (746)
|+.++..+
T Consensus 219 ~~~~~~~~ 226 (229)
T cd03254 219 GTHDELLA 226 (229)
T ss_pred CCHHHHHh
Confidence 99877654
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-40 Score=370.08 Aligned_cols=228 Identities=26% Similarity=0.425 Sum_probs=194.3
Q ss_pred ceEEEEeEEEEEeeccc---cccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCC
Q 004537 148 IYLKFTDVTYKVILKGM---TSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS 224 (746)
Q Consensus 148 ~~l~~~nvs~~~~~~~~---~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~ 224 (746)
..++++||++.|..++. ...+...+++||||++++||++||+|+||||||||.|+|+|.. . +.+|+|.++|.+..
T Consensus 279 ~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~-~-P~~G~i~~~g~~~~ 356 (539)
T COG1123 279 PLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLL-P-PSSGSIIFDGQDLD 356 (539)
T ss_pred ceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCC-C-CCCceEEEeCcccc
Confidence 35899999999975331 1123467999999999999999999999999999999999854 3 46899999998731
Q ss_pred ------hhccCcEEEEecCC--cCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCC
Q 004537 225 ------KSLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGV 296 (746)
Q Consensus 225 ------~~~~~~i~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~L 296 (746)
...++++-+||||+ .|.|.+||+++|.-....... ...++.++++.++++.+||+.. ..++++++|
T Consensus 357 ~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~--~~~~~~~~rv~~ll~~VgL~~~----~l~ryP~el 430 (539)
T COG1123 357 LTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGG--GSGAERRARVAELLELVGLPPE----FLDRYPHEL 430 (539)
T ss_pred cccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcc--cchHHHHHHHHHHHHHcCCCHH----HHhcCchhc
Confidence 13567888999987 589999999999987654332 2356677789999999999842 345688999
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEE
Q 004537 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLL 375 (746)
Q Consensus 297 SGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv 375 (746)
|||||||++|||||+.+|++|++|||||+||+..+.+++++|+++.++ |.|.|+||||+. .+...||||++|++|+||
T Consensus 431 SGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~-vV~~i~drv~vm~~G~iV 509 (539)
T COG1123 431 SGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLA-VVRYIADRVAVMYDGRIV 509 (539)
T ss_pred CcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH-HHHhhCceEEEEECCeEE
Confidence 999999999999999999999999999999999999999999999876 999999999976 578899999999999999
Q ss_pred EecCHHHHH
Q 004537 376 YFGKASEAM 384 (746)
Q Consensus 376 ~~G~~~~~~ 384 (746)
+.|+.+++.
T Consensus 510 E~G~~~~v~ 518 (539)
T COG1123 510 EEGPTEKVF 518 (539)
T ss_pred EeCCHHHHh
Confidence 999888875
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-40 Score=378.32 Aligned_cols=219 Identities=26% Similarity=0.403 Sum_probs=184.7
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCC-CCccEEEECCEeCCh---
Q 004537 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP-TVGGSITYNDHPYSK--- 225 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~-~~~G~I~~~G~~~~~--- 225 (746)
|+++||+++| +++++|+|+||++++||+++|+||||||||||+|+|+|.. .+ +.+|+|.++|+++..
T Consensus 2 l~i~~l~~~~--------~~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~-~~~~~~G~i~~~g~~~~~~~~ 72 (500)
T TIGR02633 2 LEMKGIVKTF--------GGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVY-PHGTWDGEIYWSGSPLKASNI 72 (500)
T ss_pred EEEEeEEEEe--------CCeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCC-CCCCCCeEEEECCEECCCCCH
Confidence 7899999998 3457999999999999999999999999999999999965 33 258999999998752
Q ss_pred --hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCC-CCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHH
Q 004537 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPN-TLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (746)
Q Consensus 226 --~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerq 302 (746)
..++.++||+|++.+++.+||+||+.++....... ....++..++++++++.++|.+..+. ..+++|||||||
T Consensus 73 ~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~----~~~~~LSgG~~q 148 (500)
T TIGR02633 73 RDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVT----RPVGDYGGGQQQ 148 (500)
T ss_pred HHHHhCCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCccc----CchhhCCHHHHH
Confidence 13467999999999999999999999865322111 12233445678899999999765421 234689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHH
Q 004537 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (746)
Q Consensus 303 Rv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~ 382 (746)
||+|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+.+.||+|++|++|++++.|++++
T Consensus 149 rv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~-~~~~~~d~i~~l~~G~i~~~~~~~~ 227 (500)
T TIGR02633 149 LVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLN-EVKAVCDTICVIRDGQHVATKDMST 227 (500)
T ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHH-HHHHhCCEEEEEeCCeEeeecCccc
Confidence 999999999999999999999999999999999999999888999999999975 5778899999999999999998654
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-40 Score=341.08 Aligned_cols=210 Identities=24% Similarity=0.410 Sum_probs=175.8
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (746)
.|+++||+++| +++++|+|+|+++++||+++|+||||||||||+++|+|.. ++.+|+|.++|.++..
T Consensus 7 ~i~~~~l~~~~--------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~--~~~~G~i~~~g~~~~~~~~ 76 (225)
T PRK10247 7 LLQLQNVGYLA--------GDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLI--SPTSGTLLFEGEDISTLKP 76 (225)
T ss_pred eEEEeccEEee--------CCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhccc--CCCCCeEEECCEEcCcCCH
Confidence 59999999988 3457999999999999999999999999999999999954 3568999999988642
Q ss_pred -hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCC-ccccccccCccccCCCHHHHHH
Q 004537 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVSGGERKR 303 (746)
Q Consensus 226 -~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSGGerqR 303 (746)
.+++.++|++|++.+++ .||+||+.+....+.. . ...++++++++.+++. ...++ .++.||||||||
T Consensus 77 ~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~---~--~~~~~~~~~l~~~~l~~~~~~~-----~~~~LS~G~~qr 145 (225)
T PRK10247 77 EIYRQQVSYCAQTPTLFG-DTVYDNLIFPWQIRNQ---Q--PDPAIFLDDLERFALPDTILTK-----NIAELSGGEKQR 145 (225)
T ss_pred HHHHhccEEEeccccccc-ccHHHHHHhHHhhcCC---C--hHHHHHHHHHHHcCCChHHhcC-----CcccCCHHHHHH
Confidence 34678999999999887 5999999886433211 1 1234577899999995 34443 356899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEe-CCeEEEecCHH
Q 004537 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLG-KGSLLYFGKAS 381 (746)
Q Consensus 304 v~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~-~G~iv~~G~~~ 381 (746)
|+|||+|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|++.. + +.||++++|+ ++..+.+|+++
T Consensus 146 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~-~-~~~d~i~~l~~~~~~~~~~~~~ 223 (225)
T PRK10247 146 ISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDE-I-NHADKVITLQPHAGEMQEARYE 223 (225)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHH-H-HhCCEEEEEecccchHhhhhhc
Confidence 99999999999999999999999999999999999998764 8999999999763 5 5699999995 56777777764
|
|
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-41 Score=317.37 Aligned_cols=212 Identities=32% Similarity=0.500 Sum_probs=183.0
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (746)
.|+.+++++.+.. ..+...||++|++.|++||.+||+|||||||||||-+++|. . .+++|+|.+.|+++.+
T Consensus 6 ii~~~~l~ktvg~----~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGL-d-~~ssGeV~l~G~~L~~ldE 79 (228)
T COG4181 6 IIEVHHLSKTVGQ----GEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGL-D-DPSSGEVRLLGQPLHKLDE 79 (228)
T ss_pred eeehhhhhhhhcC----CCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcC-C-CCCCceEEEcCcchhhcCH
Confidence 4788888887632 23456899999999999999999999999999999999994 3 3569999999999752
Q ss_pred ----hc-cCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHH
Q 004537 226 ----SL-KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGE 300 (746)
Q Consensus 226 ----~~-~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGe 300 (746)
.+ .+++|+|||...|.|+||..||+...+.++.. ......+.+.+.++.+||.+..+. ++.+|||||
T Consensus 80 d~rA~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge---~~~~~~~~A~~lL~~vGLg~Rl~H-----yP~qLSGGE 151 (228)
T COG4181 80 DARAALRARHVGFVFQSFHLIPNLTALENVALPLELRGE---SSADSRAGAKALLEAVGLGKRLTH-----YPAQLSGGE 151 (228)
T ss_pred HHHHHhhccceeEEEEeeeccccchhhhhccchhhhcCC---ccccHHHHHHHHHHHhCccccccc-----CccccCchH
Confidence 23 47899999999999999999999998877642 233445668889999999876654 567999999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEE
Q 004537 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (746)
Q Consensus 301 rqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~ 376 (746)
+|||+||||++..|+|||.||||-+||..+..+|.++|-.+.++ |.|.|++||||. +...|||++-|.+|+++.
T Consensus 152 QQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~--LA~Rc~R~~r~~~G~l~~ 226 (228)
T COG4181 152 QQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQ--LAARCDRQLRLRSGRLVE 226 (228)
T ss_pred HHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHH--HHHhhhheeeeecceecc
Confidence 99999999999999999999999999999999999999998754 999999999986 567799999999999975
|
|
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=351.58 Aligned_cols=224 Identities=24% Similarity=0.429 Sum_probs=183.6
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCC---CCCccEEEECCEeCCh
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME---PTVGGSITYNDHPYSK 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~---~~~~G~I~~~G~~~~~ 225 (746)
.|+++||+++| +++.+|+|+|++|++||+++|+||||||||||+++|+|.... ++.+|+|.++|.++..
T Consensus 45 ~l~i~nl~~~~--------~~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~ 116 (305)
T PRK14264 45 KLSVEDLDVYY--------GDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQ 116 (305)
T ss_pred eEEEEEEEEEe--------CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccc
Confidence 69999999998 345799999999999999999999999999999999996532 1468999999998742
Q ss_pred ------hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCC---------CCc-HHHHHHHHHHHHHHcCCCcccccccc
Q 004537 226 ------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPN---------TLT-KQQKEKRAIDVINELGLERCQDTMIG 289 (746)
Q Consensus 226 ------~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~---------~~~-~~~~~~~v~~~l~~lgL~~~~~~~vg 289 (746)
..++.++||+|++.+++ .||+||+.++....... ... ....++++.++++.+++.+..+...
T Consensus 117 ~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~- 194 (305)
T PRK14264 117 DGVNLVELRKRVGMVFQSPNPFP-KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRL- 194 (305)
T ss_pred ccccHHHHhhceEEEccCCcccc-ccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHh-
Confidence 34578999999998887 59999999875321100 011 2233566888999998854332222
Q ss_pred CccccCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEE-EE
Q 004537 290 GSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKL-IL 368 (746)
Q Consensus 290 ~~~~~~LSGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i-~v 368 (746)
+..++.|||||||||+|||+|+.+|+||||||||+|||+.++..+.+.|+++++ ++|||+++|++. .+.+.||++ ++
T Consensus 195 ~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~-~i~~~~d~i~~~ 272 (305)
T PRK14264 195 DDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE-EYTVVVVTHNMQ-QAARISDQTAVF 272 (305)
T ss_pred cCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHH-HHHHhcCEEEEE
Confidence 244678999999999999999999999999999999999999999999999976 589999999975 467889997 57
Q ss_pred EeCCeEEEecCHHHHH
Q 004537 369 LGKGSLLYFGKASEAM 384 (746)
Q Consensus 369 L~~G~iv~~G~~~~~~ 384 (746)
|++|++++.|+++++.
T Consensus 273 l~~G~i~~~g~~~~~~ 288 (305)
T PRK14264 273 LTGGELVEYDDTDKIF 288 (305)
T ss_pred ecCCEEEEeCCHHHHH
Confidence 8999999999988764
|
|
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-40 Score=348.08 Aligned_cols=219 Identities=23% Similarity=0.389 Sum_probs=179.9
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCChhcc
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~ 228 (746)
.|+++||+++|. +++.+|+|+|++|++||+++|+||||||||||+|+|+|.. ++.+|+|.++|+++....+
T Consensus 6 ~l~~~~l~~~~~-------~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~--~p~~G~i~~~g~~i~~~~~ 76 (272)
T PRK15056 6 GIVVNDVTVTWR-------NGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFV--RLASGKISILGQPTRQALQ 76 (272)
T ss_pred eEEEEeEEEEec-------CCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC--CCCceEEEECCEEhHHhhc
Confidence 589999999982 2357999999999999999999999999999999999964 3468999999998754333
Q ss_pred -CcEEEEecCCcCC--CCCCHHHHHHHHHhccCC-CCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHH
Q 004537 229 -SKIGFVTQDDVLF--PHLTVKETLTYAALLRLP-NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (746)
Q Consensus 229 -~~i~yv~Q~~~l~--~~lTV~E~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv 304 (746)
+.++|++|++.+. ...+++||+.++...... ........++++.++++.+||.+..++. +..||||||||+
T Consensus 77 ~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgG~~qrv 151 (272)
T PRK15056 77 KNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQ-----IGELSGGQKKRV 151 (272)
T ss_pred cceEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCC-----cccCCHHHHHHH
Confidence 4699999997652 234789998764211000 0011223345678899999998777654 458999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHH
Q 004537 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (746)
Q Consensus 305 ~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 383 (746)
+|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++. ++.+.||+++++ +|++++.|+++++
T Consensus 152 ~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~-~~~~~~d~v~~~-~G~i~~~g~~~~~ 228 (272)
T PRK15056 152 FLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLG-SVTEFCDYTVMV-KGTVLASGPTETT 228 (272)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEE-CCEEEeecCHHhc
Confidence 9999999999999999999999999999999999999877999999999975 577889999877 8999999998876
|
|
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-40 Score=339.51 Aligned_cols=203 Identities=24% Similarity=0.393 Sum_probs=171.5
Q ss_pred ceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCC---CCccEEEECCEeCChh-c-cCcEEEEecCCc--CCCCC
Q 004537 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP---TVGGSITYNDHPYSKS-L-KSKIGFVTQDDV--LFPHL 244 (746)
Q Consensus 172 iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~---~~~G~I~~~G~~~~~~-~-~~~i~yv~Q~~~--l~~~l 244 (746)
+|+|+|+++++||+++|+||||||||||+|+|+|.. .| +.+|+|.++|+++... . ++.++|++|++. +++.+
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~ 79 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLL-PPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLF 79 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCccc
Confidence 589999999999999999999999999999999964 33 1689999999987532 2 357999999984 56678
Q ss_pred CHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCc---cccccccCccccCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q 004537 245 TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER---CQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDE 321 (746)
Q Consensus 245 TV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~---~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~illLDE 321 (746)
|++||+.+...... .......+++.++++.+++++ ..+. .+..|||||||||+|||+|+.+|++|||||
T Consensus 80 t~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~~~LS~G~~qrv~laral~~~p~vllLDE 151 (230)
T TIGR02770 80 TMGNHAIETLRSLG---KLSKQARALILEALEAVGLPDPEEVLKK-----YPFQLSGGMLQRVMIALALLLEPPFLIADE 151 (230)
T ss_pred CHHHHHHHHHHHcC---ccHHHHHHHHHHHHHHcCCCchHHHHhC-----ChhhcCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 99999987653221 112334567889999999973 3333 456899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHH
Q 004537 322 PTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (746)
Q Consensus 322 PTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (746)
||+|||+.++..+.+.|++++++ |+|||+++|++. ++...||++++|++|+++..|+++++.
T Consensus 152 Pt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 214 (230)
T TIGR02770 152 PTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLG-VVARIADEVAVMDDGRIVERGTVKEIF 214 (230)
T ss_pred CccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999764 899999999976 577889999999999999999988874
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-40 Score=376.14 Aligned_cols=216 Identities=25% Similarity=0.399 Sum_probs=184.0
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (746)
.|+++||+++| +++.+|+|+||++++||+++|+||||||||||+|+|+|.. ++.+|+|.++|+++..
T Consensus 4 ~l~~~~l~~~~--------~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~--~p~~G~I~~~g~~i~~~~~ 73 (501)
T PRK11288 4 YLSFDGIGKTF--------PGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNY--QPDAGSILIDGQEMRFAST 73 (501)
T ss_pred eEEEeeeEEEE--------CCEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCC--CCCCCEEEECCEECCCCCH
Confidence 58999999998 2456999999999999999999999999999999999954 3568999999998742
Q ss_pred --hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHH
Q 004537 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (746)
Q Consensus 226 --~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqR 303 (746)
.+++.++||+|++.+++.+||+||+.++............+..+++.++++.+||++..+.. +.+||||||||
T Consensus 74 ~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgGq~qr 148 (501)
T PRK11288 74 TAALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTP-----LKYLSIGQRQM 148 (501)
T ss_pred HHHHhCCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCc-----hhhCCHHHHHH
Confidence 24578999999999999999999999864211111123344456788999999998665543 46899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCH
Q 004537 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380 (746)
Q Consensus 304 v~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~ 380 (746)
|+|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. ++.+.||++++|++|+++..++.
T Consensus 149 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~-~~~~~~d~i~~l~~G~i~~~~~~ 224 (501)
T PRK11288 149 VEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRME-EIFALCDAITVFKDGRYVATFDD 224 (501)
T ss_pred HHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEeecCc
Confidence 99999999999999999999999999999999999999878999999999975 56788999999999999877653
|
|
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-40 Score=338.82 Aligned_cols=209 Identities=30% Similarity=0.546 Sum_probs=172.1
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (746)
.++++|++++|. ..++.+|+|+|+++++|++++|+||||||||||+++|+|.. ++.+|+|.++|.++..
T Consensus 2 ~l~~~~l~~~~~------~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~--~~~~G~i~~~g~~~~~~~~ 73 (220)
T cd03245 2 RIEFRNVSFSYP------NQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLY--KPTSGSVLLDGTDIRQLDP 73 (220)
T ss_pred eEEEEEEEEEcC------CCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCc--CCCCCeEEECCEEhHHCCH
Confidence 378999999882 12356999999999999999999999999999999999964 3568999999998642
Q ss_pred -hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCcccccccc------CccccCCCH
Q 004537 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIG------GSFVRGVSG 298 (746)
Q Consensus 226 -~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg------~~~~~~LSG 298 (746)
..++.++|++|++.+++ .||.||+.+.... .. .+.+.+.++.+++.+..+.... ...+..|||
T Consensus 74 ~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~-----~~----~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSg 143 (220)
T cd03245 74 ADLRRNIGYVPQDVTLFY-GTLRDNITLGAPL-----AD----DERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSG 143 (220)
T ss_pred HHHHhhEEEeCCCCcccc-chHHHHhhcCCCC-----CC----HHHHHHHHHHcCcHHHHHhccccccceecCCCccCCH
Confidence 24567999999998887 6999999874211 11 2345567777888765554321 123468999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEec
Q 004537 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (746)
Q Consensus 299 GerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G 378 (746)
|||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++. .+ +.||++++|++|++++.|
T Consensus 144 G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~-~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 144 GQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLG-DKTLIIITHRPS-LL-DLVDRIIVMDSGRIVADG 220 (220)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHH-HH-HhCCEEEEEeCCeEeecC
Confidence 999999999999999999999999999999999999999999876 489999999976 34 799999999999998764
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-40 Score=332.19 Aligned_cols=192 Identities=30% Similarity=0.429 Sum_probs=163.2
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh----
Q 004537 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (746)
++++|++++| +++.+|+|+|+++++||+++|+||||||||||+++|+|....++.+|+|.+||+++..
T Consensus 1 l~~~~l~~~~--------~~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~ 72 (200)
T cd03217 1 LEIKDLHVSV--------GGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPE 72 (200)
T ss_pred CeEEEEEEEe--------CCEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHH
Confidence 4689999988 2356999999999999999999999999999999999963123468999999998753
Q ss_pred h-ccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHH
Q 004537 226 S-LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (746)
Q Consensus 226 ~-~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv 304 (746)
. .++.++|++|++.+++..|+++++. ...+.||||||||+
T Consensus 73 ~~~~~~i~~v~q~~~~~~~~~~~~~l~---------------------------------------~~~~~LS~G~~qrv 113 (200)
T cd03217 73 ERARLGIFLAFQYPPEIPGVKNADFLR---------------------------------------YVNEGFSGGEKKRN 113 (200)
T ss_pred HHhhCcEEEeecChhhccCccHHHHHh---------------------------------------hccccCCHHHHHHH
Confidence 1 2445999999999998888887760 01136999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHh-ccCEEEEEeCCeEEEecCHHHH
Q 004537 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFH-KFDKLILLGKGSLLYFGKASEA 383 (746)
Q Consensus 305 ~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~-~~D~i~vL~~G~iv~~G~~~~~ 383 (746)
+|||+|+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||++. .+.+ .||++++|++|++++.|+. ++
T Consensus 114 ~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~-~~~~~~~d~i~~l~~G~i~~~~~~-~~ 191 (200)
T cd03217 114 EILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQR-LLDYIKPDRVHVLYDGRIVKSGDK-EL 191 (200)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhhCCEEEEEECCEEEEEccH-HH
Confidence 9999999999999999999999999999999999999877899999999976 4555 7999999999999999954 46
Q ss_pred HHHHHhc
Q 004537 384 MAYFSSI 390 (746)
Q Consensus 384 ~~~f~~~ 390 (746)
..+|...
T Consensus 192 ~~~~~~~ 198 (200)
T cd03217 192 ALEIEKK 198 (200)
T ss_pred Hhhhccc
Confidence 6666433
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. |
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-40 Score=375.25 Aligned_cols=215 Identities=20% Similarity=0.312 Sum_probs=182.5
Q ss_pred EeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh-----hc
Q 004537 153 TDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-----SL 227 (746)
Q Consensus 153 ~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~-----~~ 227 (746)
+|++++| +++++|+|+||++++||+++|+||||||||||+|+|+|.. ++.+|+|.++|+++.. ..
T Consensus 2 ~nl~~~~--------~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~--~p~~G~i~~~g~~~~~~~~~~~~ 71 (491)
T PRK10982 2 SNISKSF--------PGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIY--QKDSGSILFQGKEIDFKSSKEAL 71 (491)
T ss_pred CceEEEe--------CCEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCC--CCCceEEEECCEECCCCCHHHHH
Confidence 6888888 3457999999999999999999999999999999999954 3468999999998742 23
Q ss_pred cCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHH
Q 004537 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (746)
Q Consensus 228 ~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA 307 (746)
++.++||+|++.+++.+||+||+.++............+..++++++++.+++.+..++. +.+|||||||||+||
T Consensus 72 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgGq~qrv~lA 146 (491)
T PRK10982 72 ENGISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAK-----VATLSVSQMQMIEIA 146 (491)
T ss_pred hCCEEEEecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCc-----hhhCCHHHHHHHHHH
Confidence 567999999998898999999998764211010112334456788999999998766654 468999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHH
Q 004537 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (746)
Q Consensus 308 ~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 383 (746)
|+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. ++.+.||++++|++|++++.|++++.
T Consensus 147 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 221 (491)
T PRK10982 147 KAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKME-EIFQLCDEITILRDGQWIATQPLAGL 221 (491)
T ss_pred HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEeecChhhC
Confidence 9999999999999999999999999999999999888999999999975 57788999999999999999987664
|
|
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-39 Score=341.67 Aligned_cols=221 Identities=25% Similarity=0.447 Sum_probs=181.6
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEEC------CEe
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYN------DHP 222 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~------G~~ 222 (746)
.++++|++++| +++.+|+|+||++++||+++|+||||||||||+++|+|.. . +.+|+|.++ |++
T Consensus 10 ~i~~~~~~~~~--------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~-~-~~~G~v~~~G~~~~~g~~ 79 (257)
T PRK14246 10 VFNISRLYLYI--------NDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLI-E-IYDSKIKVDGKVLYFGKD 79 (257)
T ss_pred heeeeeEEEec--------CCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-C-CCcCceeEcCEEEECCcc
Confidence 59999999998 4567999999999999999999999999999999999954 3 345555554 455
Q ss_pred CC----hhccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCH
Q 004537 223 YS----KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSG 298 (746)
Q Consensus 223 ~~----~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSG 298 (746)
+. ...++.++|++|++.+++.+||+||+.++..... ...+++..+++.++++.+++.+...... +..++.|||
T Consensus 80 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~LS~ 156 (257)
T PRK14246 80 IFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHG--IKEKREIKKIVEECLRKVGLWKEVYDRL-NSPASQLSG 156 (257)
T ss_pred cccCCHHHHhcceEEEccCCccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCCccchhhh-cCCcccCCH
Confidence 42 1346789999999999998999999998754221 1123445567889999999864211111 124568999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEec
Q 004537 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (746)
Q Consensus 299 GerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G 378 (746)
|||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++.+ +.|||++||++. .+.+.||++++|++|+++..|
T Consensus 157 G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiilvsh~~~-~~~~~~d~v~~l~~g~i~~~g 234 (257)
T PRK14246 157 GQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN-EIAIVIVSHNPQ-QVARVADYVAFLYNGELVEWG 234 (257)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CcEEEEEECCHH-HHHHhCCEEEEEECCEEEEEC
Confidence 999999999999999999999999999999999999999999865 699999999975 466889999999999999999
Q ss_pred CHHHHH
Q 004537 379 KASEAM 384 (746)
Q Consensus 379 ~~~~~~ 384 (746)
+++++.
T Consensus 235 ~~~~~~ 240 (257)
T PRK14246 235 SSNEIF 240 (257)
T ss_pred CHHHHH
Confidence 998865
|
|
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-40 Score=343.18 Aligned_cols=200 Identities=29% Similarity=0.468 Sum_probs=172.9
Q ss_pred ceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh----hccCcEEEEecCCcCCCCCCHH
Q 004537 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHLTVK 247 (746)
Q Consensus 172 iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~----~~~~~i~yv~Q~~~l~~~lTV~ 247 (746)
+|+|+||++++||+++|+||||||||||+++|+|.. ++ +|+|.++|+++.. ..++.++|++|++.+++.+||+
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~--~~-~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 87 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLL--PG-SGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVF 87 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCC--CC-CeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHH
Confidence 799999999999999999999999999999999964 34 8999999998742 3456799999998888789999
Q ss_pred HHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHHHHHhh-------CCCEEEEe
Q 004537 248 ETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIII-------NPSLLFLD 320 (746)
Q Consensus 248 E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~-------~p~illLD 320 (746)
||+.+.... ....++..++++++++.+||.+..++. ++.||||||||++|||+|+. +|++||||
T Consensus 88 ~nl~~~~~~----~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllD 158 (248)
T PRK03695 88 QYLTLHQPD----KTRTEAVASALNEVAEALGLDDKLGRS-----VNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLD 158 (248)
T ss_pred HHHHhcCcc----CCCcHHHHHHHHHHHHHcCCHhHhcCC-----cccCCHHHHHHHHHHHHHhccccccCCCCCEEEEc
Confidence 999986321 122334456788999999998766654 46899999999999999997 67999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHH
Q 004537 321 EPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (746)
Q Consensus 321 EPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (746)
|||+|||+.++..+.+.|++++++|+|||++||++. ++.+.||++++|++|++++.|+++++.
T Consensus 159 EPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 221 (248)
T PRK03695 159 EPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLN-HTLRHADRVWLLKQGKLLASGRRDEVL 221 (248)
T ss_pred CCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 999999999999999999999877999999999975 477899999999999999999987763
|
|
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-39 Score=341.84 Aligned_cols=223 Identities=24% Similarity=0.388 Sum_probs=182.0
Q ss_pred ceEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCC-C--CCccEEEECCEeCC
Q 004537 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-P--TVGGSITYNDHPYS 224 (746)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~-~--~~~G~I~~~G~~~~ 224 (746)
..|+++|++++| +++++|+|+|++|++||+++|+||||||||||+++|+|.... + +.+|+|.++|.++.
T Consensus 15 ~~l~~~~l~~~~--------~~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~ 86 (265)
T PRK14252 15 QKSEVNKLNFYY--------GGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVN 86 (265)
T ss_pred ceEEEEEEEEEE--------CCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCcccc
Confidence 359999999998 245799999999999999999999999999999999996532 1 15899999997652
Q ss_pred --------hhccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCC
Q 004537 225 --------KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGV 296 (746)
Q Consensus 225 --------~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~L 296 (746)
..+++.++|++|++.+++. ||+||+.++..... .......++++.+.++.+++.+...... +..+..|
T Consensus 87 ~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~~L 162 (265)
T PRK14252 87 ILSPEVDPIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIRG--VKRRSILEERVENALRNAALWDEVKDRL-GDLAFNL 162 (265)
T ss_pred ccccccCHHHHhccEEEEccCCcCCcc-hHHHHHHhHHHHcC--CChHHHHHHHHHHHHHHcCCchhhhHHH-hCCcccC
Confidence 1346779999999999985 99999998753221 1112233456778888887743211111 2345689
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEE
Q 004537 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (746)
Q Consensus 297 SGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~ 376 (746)
|||||||++|||+|+.+|+++||||||+|||+.++..+.+.|+++++ ++|||++||++. ++.+.||++++|++|++++
T Consensus 163 S~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~tiiivth~~~-~~~~~~d~i~~l~~G~i~~ 240 (265)
T PRK14252 163 SGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKN-KVTILIVTHNMQ-QAARVSDYTAYMYMGELIE 240 (265)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEecCHH-HHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999976 789999999975 5778899999999999999
Q ss_pred ecCHHHHH
Q 004537 377 FGKASEAM 384 (746)
Q Consensus 377 ~G~~~~~~ 384 (746)
.|+.+++.
T Consensus 241 ~g~~~~~~ 248 (265)
T PRK14252 241 FGATDTIF 248 (265)
T ss_pred eCCHHHHH
Confidence 99988764
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=376.08 Aligned_cols=221 Identities=29% Similarity=0.447 Sum_probs=185.3
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEEC----------
Q 004537 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYN---------- 219 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~---------- 219 (746)
|+++|++++| +++.+|+|+||++++||+++|+||||||||||+|+|+|....++.+|+|.++
T Consensus 1 l~~~~l~~~~--------~~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~ 72 (520)
T TIGR03269 1 IEVKNLTKKF--------DGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYV 72 (520)
T ss_pred CEEEEEEEEE--------CCeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEecccccccccc
Confidence 4789999998 3457999999999999999999999999999999999964113458999997
Q ss_pred -------------CEeC----------C----hhccCcEEEEecC-CcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHH
Q 004537 220 -------------DHPY----------S----KSLKSKIGFVTQD-DVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRA 271 (746)
Q Consensus 220 -------------G~~~----------~----~~~~~~i~yv~Q~-~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v 271 (746)
|.++ . ...++.++||+|+ +.+++.+||+||+.++.... ..+..+.++++
T Consensus 73 ~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~ 149 (520)
T TIGR03269 73 ERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEI---GYEGKEAVGRA 149 (520)
T ss_pred ccccccccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHc---CCCHHHHHHHH
Confidence 3221 0 1235679999997 67888899999999875432 12344556788
Q ss_pred HHHHHHcCCCccccccccCccccCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEE
Q 004537 272 IDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVT 350 (746)
Q Consensus 272 ~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~-~g~Tvi~ 350 (746)
.++++.+||++..+.. +++|||||||||+|||||+.+|++|||||||++||+.++..+++.|+++++ .|+|||+
T Consensus 150 ~~~l~~~gl~~~~~~~-----~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvii 224 (520)
T TIGR03269 150 VDLIEMVQLSHRITHI-----ARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVL 224 (520)
T ss_pred HHHHHHcCChhhhhcC-----cccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEE
Confidence 9999999998766643 468999999999999999999999999999999999999999999999965 4899999
Q ss_pred EecCCChHHHhccCEEEEEeCCeEEEecCHHHHHHHH
Q 004537 351 TIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYF 387 (746)
Q Consensus 351 ~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~~f 387 (746)
+||++. .+.+.||++++|++|++++.|+++++...+
T Consensus 225 vtHd~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 260 (520)
T TIGR03269 225 TSHWPE-VIEDLSDKAIWLENGEIKEEGTPDEVVAVF 260 (520)
T ss_pred EeCCHH-HHHHhcCEEEEEeCCEEeeecCHHHHHHHH
Confidence 999975 466889999999999999999998876654
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=382.64 Aligned_cols=227 Identities=24% Similarity=0.382 Sum_probs=188.9
Q ss_pred ceEEEEeEEEEEeeccc--c-ccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCC
Q 004537 148 IYLKFTDVTYKVILKGM--T-SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS 224 (746)
Q Consensus 148 ~~l~~~nvs~~~~~~~~--~-~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~ 224 (746)
..|+++||++.|...+. . ....+.+|+||||+|++||+++|+||||||||||+|+|+|.+ ++.+|+|.++|+++.
T Consensus 312 ~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~--~p~~G~I~~~g~~i~ 389 (623)
T PRK10261 312 PILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLV--ESQGGEIIFNGQRID 389 (623)
T ss_pred ceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCC--CCCCcEEEECCEECC
Confidence 36999999999842100 0 001246999999999999999999999999999999999965 346899999999874
Q ss_pred h-------hccCcEEEEecCC--cCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCC-ccccccccCcccc
Q 004537 225 K-------SLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVR 294 (746)
Q Consensus 225 ~-------~~~~~i~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~ 294 (746)
. .++++|+||+|++ .+++.+||.||+.+...... ...+++..+++.++++.+||+ +..++ +++
T Consensus 390 ~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~L~~~gL~~~~~~~-----~~~ 462 (623)
T PRK10261 390 TLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHG--LLPGKAAAARVAWLLERVGLLPEHAWR-----YPH 462 (623)
T ss_pred cCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCCHHHhhC-----Ccc
Confidence 2 2456899999997 58889999999988654321 112344557788999999996 44554 457
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCe
Q 004537 295 GVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGS 373 (746)
Q Consensus 295 ~LSGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~ 373 (746)
+|||||||||+|||||+.+|++|||||||+|||+.++.++++.|++++++ |.|||++|||+. .+.++||+|++|++|+
T Consensus 463 ~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~-~v~~~~dri~vl~~G~ 541 (623)
T PRK10261 463 EFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMA-VVERISHRVAVMYLGQ 541 (623)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCE
Confidence 89999999999999999999999999999999999999999999999775 899999999975 5778999999999999
Q ss_pred EEEecCHHHHH
Q 004537 374 LLYFGKASEAM 384 (746)
Q Consensus 374 iv~~G~~~~~~ 384 (746)
+++.|+++++.
T Consensus 542 iv~~g~~~~i~ 552 (623)
T PRK10261 542 IVEIGPRRAVF 552 (623)
T ss_pred EEEecCHHHHh
Confidence 99999999874
|
|
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-40 Score=340.71 Aligned_cols=214 Identities=33% Similarity=0.517 Sum_probs=170.5
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh----
Q 004537 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (746)
++++|++++|. +++.+|+|+|++|++||+++|+||||||||||+++|+|.. ++.+|+|.++|+++..
T Consensus 1 l~~~~l~~~~~-------~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~--~~~~G~v~~~g~~~~~~~~~ 71 (236)
T cd03253 1 IEFENVTFAYD-------PGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFY--DVSSGSILIDGQDIREVTLD 71 (236)
T ss_pred CEEEEEEEEeC-------CCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccc--CCCCCEEEECCEEhhhCCHH
Confidence 47899999882 1356999999999999999999999999999999999954 3568999999988742
Q ss_pred hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHH-----HHHHHHHHcCCCccccccccCccccCCCHHH
Q 004537 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEK-----RAIDVINELGLERCQDTMIGGSFVRGVSGGE 300 (746)
Q Consensus 226 ~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~-----~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGe 300 (746)
.+++.++|++|++.+++ .||+||+.+.... .......+ .+.+.++.+ +...++.+. ..++.|||||
T Consensus 72 ~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~-----~~~~~~~~~~~~~~l~~~~~~l--~~~~~~~~~-~~~~~LS~G~ 142 (236)
T cd03253 72 SLRRAIGVVPQDTVLFN-DTIGYNIRYGRPD-----ATDEEVIEAAKAAQIHDKIMRF--PDGYDTIVG-ERGLKLSGGE 142 (236)
T ss_pred HHHhhEEEECCCChhhc-chHHHHHhhcCCC-----CCHHHHHHHHHHcCcHHHHHhc--cccccchhh-cCCCcCCHHH
Confidence 34667999999999886 6999999875321 11111111 122233333 212222222 2357899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCH
Q 004537 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380 (746)
Q Consensus 301 rqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~ 380 (746)
||||+|||+|+.+|++|||||||+|||+.+...+.+.|+++++ |+|||+++|++.. + ..||++++|++|++++.|+.
T Consensus 143 ~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sh~~~~-~-~~~d~~~~l~~g~i~~~~~~ 219 (236)
T cd03253 143 KQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSK-GRTTIVIAHRLST-I-VNADKIIVLKDGRIVERGTH 219 (236)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHH-H-HhCCEEEEEECCEEEeeCCH
Confidence 9999999999999999999999999999999999999999977 9999999999764 4 45999999999999999998
Q ss_pred HHHH
Q 004537 381 SEAM 384 (746)
Q Consensus 381 ~~~~ 384 (746)
+++.
T Consensus 220 ~~~~ 223 (236)
T cd03253 220 EELL 223 (236)
T ss_pred HHHh
Confidence 7764
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-40 Score=310.29 Aligned_cols=216 Identities=31% Similarity=0.522 Sum_probs=190.0
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCC----
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---- 224 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~---- 224 (746)
.|+++|+++.| +...+|.||+++.+.||.+.++||||||||||++.|. .+ +.+.+|+..+.|...+
T Consensus 2 sirv~~in~~y--------g~~q~lfdi~l~~~~getlvllgpsgagkssllr~ln-ll-e~p~sg~l~ia~~~fd~s~~ 71 (242)
T COG4161 2 SIQLNGINCFY--------GAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLN-LL-EMPRSGTLNIAGNHFDFSKT 71 (242)
T ss_pred ceEEccccccc--------ccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHH-HH-hCCCCCeEEecccccccccC
Confidence 47899999988 5668999999999999999999999999999999997 44 3456899999886432
Q ss_pred ------hhccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCH
Q 004537 225 ------KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSG 298 (746)
Q Consensus 225 ------~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSG 298 (746)
..+|+.+|+|+|+..++|++||-|||.-+.. +. ..+++++...++.++++++.|.+.+|. ++-.|||
T Consensus 72 ~~~k~i~~lr~~vgmvfqqy~lwphltv~enlieap~-kv-~gl~~~qa~~~a~ellkrlrl~~~adr-----~plhlsg 144 (242)
T COG4161 72 PSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPC-RV-LGLSKDQALARAEKLLKRLRLKPYADR-----YPLHLSG 144 (242)
T ss_pred ccHHHHHHHHHhhhhhhhhhccCchhHHHHHHHhhhH-HH-hCCCHHHHHHHHHHHHHHhcccccccc-----Cceeccc
Confidence 1468899999999999999999999976532 22 246788888899999999999998885 4568999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEec
Q 004537 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (746)
Q Consensus 299 GerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G 378 (746)
||+|||+|||||+.+|++|++||||++|||+-..++++++++|+..|.|-+++||... ...+.+.+|+.|++|+|++.|
T Consensus 145 gqqqrvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~-va~k~as~vvyme~g~ive~g 223 (242)
T COG4161 145 GQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVE-VARKTASRVVYMENGHIVEQG 223 (242)
T ss_pred chhhhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehh-HHHhhhhheEeeecCeeEeec
Confidence 9999999999999999999999999999999999999999999999999999999965 356789999999999999999
Q ss_pred CHHH
Q 004537 379 KASE 382 (746)
Q Consensus 379 ~~~~ 382 (746)
+++.
T Consensus 224 ~a~~ 227 (242)
T COG4161 224 DASC 227 (242)
T ss_pred chhh
Confidence 8754
|
|
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=330.08 Aligned_cols=198 Identities=24% Similarity=0.426 Sum_probs=169.1
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCC---hh
Q 004537 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---KS 226 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~---~~ 226 (746)
++++|++++| +++.+|+|+|+++++||+++|+||||||||||+++|+|.. ++.+|+|.++|.++. ..
T Consensus 2 l~~~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~--~p~~G~v~~~g~~~~~~~~~ 71 (204)
T PRK13538 2 LEARNLACER--------DERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLA--RPDAGEVLWQGEPIRRQRDE 71 (204)
T ss_pred eEEEEEEEEE--------CCEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCC--CCCCcEEEECCEEcccchHH
Confidence 7899999998 2356999999999999999999999999999999999954 356899999999874 23
Q ss_pred ccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHH
Q 004537 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (746)
Q Consensus 227 ~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~I 306 (746)
.+++++|++|++.+++.+||.||+.+...... . ..+++++++++.+||.+..++. ++.||||||||++|
T Consensus 72 ~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~---~---~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~G~~qrl~l 140 (204)
T PRK13538 72 YHQDLLYLGHQPGIKTELTALENLRFYQRLHG---P---GDDEALWEALAQVGLAGFEDVP-----VRQLSAGQQRRVAL 140 (204)
T ss_pred hhhheEEeCCccccCcCCcHHHHHHHHHHhcC---c---cHHHHHHHHHHHcCCHHHhhCC-----hhhcCHHHHHHHHH
Confidence 56789999999999999999999998754321 1 2345678899999998766654 46899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEE
Q 004537 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL 369 (746)
Q Consensus 307 A~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL 369 (746)
||+|+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||++.. +-...+|++++
T Consensus 141 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~-i~~~~~~~~~~ 202 (204)
T PRK13538 141 ARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLP-VASDKVRKLRL 202 (204)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhh-hccCCceEEec
Confidence 999999999999999999999999999999999998778999999999763 54555677766
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=376.29 Aligned_cols=226 Identities=27% Similarity=0.469 Sum_probs=187.0
Q ss_pred eEEEEeEEEEEeeccc---cccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh
Q 004537 149 YLKFTDVTYKVILKGM---TSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~---~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~ 225 (746)
.|+++||+++|..+.. ...+++.+|+|+||+|++||+++|+||||||||||+|+|+|.. + .+|+|+++|+++..
T Consensus 275 ~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~--~-~~G~i~~~g~~i~~ 351 (529)
T PRK15134 275 LLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI--N-SQGEIWFDGQPLHN 351 (529)
T ss_pred cccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcC--C-CCcEEEECCEEccc
Confidence 5999999999831100 0001357999999999999999999999999999999999964 3 58999999988742
Q ss_pred -------hccCcEEEEecCC--cCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCC-ccccccccCccccC
Q 004537 226 -------SLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRG 295 (746)
Q Consensus 226 -------~~~~~i~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~ 295 (746)
.++++++||+|++ .+++.+||+||+.++...+.. ..+..+.++++.++++.+||. +..+. .++.
T Consensus 352 ~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~~ 425 (529)
T PRK15134 352 LNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQP-TLSAAQREQQVIAVMEEVGLDPETRHR-----YPAE 425 (529)
T ss_pred cchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccc-cCChHHHHHHHHHHHHHcCCCHHHHhc-----CCcc
Confidence 1356799999997 478889999999987532211 123344556788999999996 34554 3568
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeE
Q 004537 296 VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (746)
Q Consensus 296 LSGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~i 374 (746)
|||||||||+|||+|+.+|++|||||||+|||+.++..+++.|++++++ |+|||++||++. .+.+.||++++|++|++
T Consensus 426 LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~-~~~~~~d~i~~l~~G~i 504 (529)
T PRK15134 426 FSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLH-VVRALCHQVIVLRQGEV 504 (529)
T ss_pred CCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhcCeEEEEECCEE
Confidence 9999999999999999999999999999999999999999999999875 899999999975 47788999999999999
Q ss_pred EEecCHHHHH
Q 004537 375 LYFGKASEAM 384 (746)
Q Consensus 375 v~~G~~~~~~ 384 (746)
++.|+++++.
T Consensus 505 ~~~~~~~~~~ 514 (529)
T PRK15134 505 VEQGDCERVF 514 (529)
T ss_pred EEEcCHHHHh
Confidence 9999998874
|
|
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=321.98 Aligned_cols=170 Identities=31% Similarity=0.608 Sum_probs=153.2
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---h
Q 004537 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---S 226 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---~ 226 (746)
++++|++++| +++++|+|+|+++++||+++|+||||||||||+++|+|.. ++.+|+|.++|+++.. .
T Consensus 1 l~~~~l~~~~--------~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~--~~~~G~i~~~g~~~~~~~~~ 70 (173)
T cd03230 1 IEVRNLSKRY--------GKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLL--KPDSGEIKVLGKDIKKEPEE 70 (173)
T ss_pred CEEEEEEEEE--------CCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC--CCCCeEEEECCEEcccchHh
Confidence 4689999988 2346999999999999999999999999999999999954 3468999999998752 4
Q ss_pred ccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHH
Q 004537 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (746)
Q Consensus 227 ~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~I 306 (746)
.++.++|++|++.+++.+|++||+. ||||||||++|
T Consensus 71 ~~~~i~~~~q~~~~~~~~tv~~~~~--------------------------------------------LS~G~~qrv~l 106 (173)
T cd03230 71 VKRRIGYLPEEPSLYENLTVRENLK--------------------------------------------LSGGMKQRLAL 106 (173)
T ss_pred hhccEEEEecCCccccCCcHHHHhh--------------------------------------------cCHHHHHHHHH
Confidence 5678999999999998899999973 99999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeE
Q 004537 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (746)
Q Consensus 307 A~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~i 374 (746)
||+|+.+|++++|||||+|||+.++..+.+.|++++++|.|+|++||++. ++.+.||++++|++|++
T Consensus 107 aral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~-~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 107 AQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILE-EAERLCDRVAILNNGRI 173 (173)
T ss_pred HHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhCCEEEEEeCCCC
Confidence 99999999999999999999999999999999999877899999999975 56678999999999974
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-39 Score=328.83 Aligned_cols=195 Identities=27% Similarity=0.444 Sum_probs=169.0
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCC---hh
Q 004537 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---KS 226 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~---~~ 226 (746)
|+++||++.| +++.+|+|+|++|++||+++|+|+||||||||+++|+|.. ++.+|+|.++|.++. ..
T Consensus 1 l~i~~l~~~~--------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~--~~~~G~i~~~g~~~~~~~~~ 70 (201)
T cd03231 1 LEADELTCER--------DGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLS--PPLAGRVLLNGGPLDFQRDS 70 (201)
T ss_pred CEEEEEEEEe--------CCceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC--CCCCcEEEECCEecccccHH
Confidence 4789999988 3457999999999999999999999999999999999954 356899999998864 24
Q ss_pred ccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHH
Q 004537 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (746)
Q Consensus 227 ~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~I 306 (746)
.+++++|++|++.+++.+||+||+.+.... ..+++++++++.+++++..++. ++.||||||||++|
T Consensus 71 ~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~---------~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~l 136 (201)
T cd03231 71 IARGLLYLGHAPGIKTTLSVLENLRFWHAD---------HSDEQVEEALARVGLNGFEDRP-----VAQLSAGQQRRVAL 136 (201)
T ss_pred hhhheEEeccccccCCCcCHHHHHHhhccc---------ccHHHHHHHHHHcCChhhhcCc-----hhhCCHHHHHHHHH
Confidence 567899999999998889999999875311 1235678899999998766654 46899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEE
Q 004537 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL 369 (746)
Q Consensus 307 A~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL 369 (746)
||+|+.+|+++||||||+|||+.++..+.+.|+++.++|+|+|++||++. ++...+|+++++
T Consensus 137 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~-~~~~~~~~~~~~ 198 (201)
T cd03231 137 ARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDL-GLSEAGARELDL 198 (201)
T ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCch-hhhhccceeEec
Confidence 99999999999999999999999999999999998877999999999976 466789999887
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-39 Score=407.45 Aligned_cols=224 Identities=26% Similarity=0.388 Sum_probs=198.0
Q ss_pred ceEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh--
Q 004537 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (746)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (746)
..|+++||+++|. ++++.+|+|||+.|++||+++|+||||||||||+|+|+|... +++|+|.++|+++..
T Consensus 1936 ~~L~v~nLsK~Y~------~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~--ptsG~I~i~G~~i~~~~ 2007 (2272)
T TIGR01257 1936 DILRLNELTKVYS------GTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTT--VTSGDATVAGKSILTNI 2007 (2272)
T ss_pred ceEEEEEEEEEEC------CCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCC--CCccEEEECCEECcchH
Confidence 3599999999982 123679999999999999999999999999999999999653 568999999998852
Q ss_pred -hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHH
Q 004537 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (746)
Q Consensus 226 -~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv 304 (746)
..++.|||++|++.+++.+||+||+.+.+.++. .++++.+++++++++.+||.+..|+.+ ++|||||||||
T Consensus 2008 ~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g---~~~~~~~~~v~~lLe~lgL~~~~dk~~-----~~LSGGqKqRL 2079 (2272)
T TIGR01257 2008 SDVHQNMGYCPQFDAIDDLLTGREHLYLYARLRG---VPAEEIEKVANWSIQSLGLSLYADRLA-----GTYSGGNKRKL 2079 (2272)
T ss_pred HHHhhhEEEEeccccCCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCHHHhcCCh-----hhCCHHHHHHH
Confidence 346789999999999999999999998776542 344455667889999999988877654 58999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHH
Q 004537 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (746)
Q Consensus 305 ~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (746)
+||+||+.+|+||||||||+|||+.+++.+.+.|++++++|+|||++||++. ++..+||||++|++|+++..|+++++.
T Consensus 2080 slA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~me-e~e~lcDrV~IL~~G~i~~~Gs~q~Lk 2158 (2272)
T TIGR01257 2080 STAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSME-ECEALCTRLAIMVKGAFQCLGTIQHLK 2158 (2272)
T ss_pred HHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999999999999999999999999878999999999975 688899999999999999999999998
Q ss_pred HHHH
Q 004537 385 AYFS 388 (746)
Q Consensus 385 ~~f~ 388 (746)
..|.
T Consensus 2159 ~~~g 2162 (2272)
T TIGR01257 2159 SKFG 2162 (2272)
T ss_pred HHhC
Confidence 8775
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-39 Score=379.66 Aligned_cols=222 Identities=22% Similarity=0.358 Sum_probs=186.6
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeC-----
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY----- 223 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~----- 223 (746)
.|+++||++.|... .++.++|+||||++++||++||+||||||||||+|+|+|.+. +.+|+|.++|.++
T Consensus 12 ~l~v~~l~~~y~~~----~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~--p~~G~i~~~g~~~~~~~~ 85 (623)
T PRK10261 12 VLAVENLNIAFMQE----QQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLE--QAGGLVQCDKMLLRRRSR 85 (623)
T ss_pred eEEEeceEEEecCC----CCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC--CCCeEEEECCEEeccccc
Confidence 69999999998321 123579999999999999999999999999999999999653 4589999998643
Q ss_pred --------Ch----hcc-CcEEEEecCC--cCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCc---ccc
Q 004537 224 --------SK----SLK-SKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER---CQD 285 (746)
Q Consensus 224 --------~~----~~~-~~i~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~---~~~ 285 (746)
.. ..+ +.||||+|++ .+++.+||+||+.++..... ..+..+.++++.++++.+||++ ..+
T Consensus 86 ~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~~~~~~ 163 (623)
T PRK10261 86 QVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQ--GASREEAMVEAKRMLDQVRIPEAQTILS 163 (623)
T ss_pred cccccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChhhHHh
Confidence 11 122 4799999998 68888999999999865321 2345555678899999999964 233
Q ss_pred ccccCccccCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccC
Q 004537 286 TMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFD 364 (746)
Q Consensus 286 ~~vg~~~~~~LSGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D 364 (746)
..+.+|||||||||+|||||+.+|++|||||||++||+.++.++.+.|++++++ |+|||++||++. .+.+.||
T Consensus 164 -----~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~-~~~~~ad 237 (623)
T PRK10261 164 -----RYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMG-VVAEIAD 237 (623)
T ss_pred -----CCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCC
Confidence 346789999999999999999999999999999999999999999999999865 899999999975 4778999
Q ss_pred EEEEEeCCeEEEecCHHHHH
Q 004537 365 KLILLGKGSLLYFGKASEAM 384 (746)
Q Consensus 365 ~i~vL~~G~iv~~G~~~~~~ 384 (746)
+|++|++|++++.|+++++.
T Consensus 238 ri~vl~~G~i~~~g~~~~~~ 257 (623)
T PRK10261 238 RVLVMYQGEAVETGSVEQIF 257 (623)
T ss_pred EEEEeeCCeecccCCHHHhh
Confidence 99999999999999988764
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-39 Score=372.01 Aligned_cols=224 Identities=23% Similarity=0.413 Sum_probs=186.0
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCC---CCccEEEECCEeCCh
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP---TVGGSITYNDHPYSK 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~---~~~G~I~~~G~~~~~ 225 (746)
.++++||+++|... ...+++|+|+||++++||+++|+||||||||||+|+|+|.+... +.+|+|.++|+++..
T Consensus 5 ~l~~~~l~~~~~~~----~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~ 80 (529)
T PRK15134 5 LLAIENLSVAFRQQ----QTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLH 80 (529)
T ss_pred eEEEeceEEEecCC----CCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEeccc
Confidence 58999999998310 11357999999999999999999999999999999999965321 258999999998742
Q ss_pred -------hcc-CcEEEEecCCc--CCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCcc---ccccccCcc
Q 004537 226 -------SLK-SKIGFVTQDDV--LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC---QDTMIGGSF 292 (746)
Q Consensus 226 -------~~~-~~i~yv~Q~~~--l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~---~~~~vg~~~ 292 (746)
..+ +++|||+|++. +++.+||+||+.+..... ...+..+..++++++++.+||.+. .++ .
T Consensus 81 ~~~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~ 153 (529)
T PRK15134 81 ASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLH--RGMRREAARGEILNCLDRVGIRQAAKRLTD-----Y 153 (529)
T ss_pred CCHHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHCCCCChHHHHhh-----C
Confidence 122 57999999974 667789999988654321 123445566788999999999752 343 4
Q ss_pred ccCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeC
Q 004537 293 VRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGK 371 (746)
Q Consensus 293 ~~~LSGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~ 371 (746)
+.+|||||||||+|||||+.+|++|||||||++||+.++..+++.|++++++ |+|||++||++. .+.+.||+|++|++
T Consensus 154 ~~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~dri~~l~~ 232 (529)
T PRK15134 154 PHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLS-IVRKLADRVAVMQN 232 (529)
T ss_pred CcccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHH-HHHHhcCEEEEEEC
Confidence 5689999999999999999999999999999999999999999999999765 899999999975 46788999999999
Q ss_pred CeEEEecCHHHHH
Q 004537 372 GSLLYFGKASEAM 384 (746)
Q Consensus 372 G~iv~~G~~~~~~ 384 (746)
|++++.|+++++.
T Consensus 233 G~i~~~g~~~~~~ 245 (529)
T PRK15134 233 GRCVEQNRAATLF 245 (529)
T ss_pred CEEEEeCCHHHHh
Confidence 9999999988764
|
|
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-39 Score=329.91 Aligned_cols=201 Identities=23% Similarity=0.338 Sum_probs=173.2
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh-hc
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-SL 227 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~-~~ 227 (746)
.|+++|++++| +++.+|+|+|+++++||+++|+||||||||||+++|+|.. ++.+|+|.++|+++.. ..
T Consensus 11 ~l~~~~l~~~~--------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~--~~~~G~i~~~g~~i~~~~~ 80 (214)
T PRK13543 11 LLAAHALAFSR--------NEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLL--HVESGQIQIDGKTATRGDR 80 (214)
T ss_pred eEEEeeEEEec--------CCceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCC--CCCCeeEEECCEEccchhh
Confidence 69999999987 3456999999999999999999999999999999999954 3468999999998753 23
Q ss_pred cCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHH
Q 004537 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (746)
Q Consensus 228 ~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA 307 (746)
++.++|++|++.+++.+|++||+.+....+. . ..++.++++++.++|++..++. +..||||||||++||
T Consensus 81 ~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~---~---~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~la 149 (214)
T PRK13543 81 SRFMAYLGHLPGLKADLSTLENLHFLCGLHG---R---RAKQMPGSALAIVGLAGYEDTL-----VRQLSAGQKKRLALA 149 (214)
T ss_pred hhceEEeecCcccccCCcHHHHHHHHHHhcC---C---cHHHHHHHHHHHcCChhhccCC-----hhhCCHHHHHHHHHH
Confidence 4569999999999998999999988654321 1 1234567889999998766654 468999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeC
Q 004537 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 371 (746)
Q Consensus 308 ~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~ 371 (746)
|+++.+|++++|||||+|||+.++..+.+.|++++++|+|+|++||++. ++.+.||++++++.
T Consensus 150 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~~~i~~l~~ 212 (214)
T PRK13543 150 RLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAY-AAPPVRTRMLTLEA 212 (214)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChh-hhhhhcceEEEEee
Confidence 9999999999999999999999999999999999888999999999975 57889999999863
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-39 Score=373.78 Aligned_cols=223 Identities=21% Similarity=0.384 Sum_probs=184.8
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (746)
.|+++||++.|.. .+++.+|+|+||+|++||+++|+||||||||||+|+|+|.. .++.+|+|.++|+++..
T Consensus 259 ~l~~~~l~~~~~~-----~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~-~~~~~G~i~~~g~~~~~~~~ 332 (506)
T PRK13549 259 ILEVRNLTAWDPV-----NPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAY-PGRWEGEIFIDGKPVKIRNP 332 (506)
T ss_pred eEEEecCcccccc-----ccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCC-CCCCCcEEEECCEECCCCCH
Confidence 5999999998721 12356999999999999999999999999999999999954 33368999999988742
Q ss_pred --hccCcEEEEecCC---cCCCCCCHHHHHHHHHhccCCC--CCcHHHHHHHHHHHHHHcCCC-ccccccccCccccCCC
Q 004537 226 --SLKSKIGFVTQDD---VLFPHLTVKETLTYAALLRLPN--TLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVS 297 (746)
Q Consensus 226 --~~~~~i~yv~Q~~---~l~~~lTV~E~l~~~~~~~~~~--~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LS 297 (746)
..++.++||+|++ .+++.+||.||+.++....... ...++..+++++++++.+++. +..++. ++.||
T Consensus 333 ~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LS 407 (506)
T PRK13549 333 QQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELA-----IARLS 407 (506)
T ss_pred HHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccc-----cccCC
Confidence 2356799999995 4788899999998763211110 012334456788999999996 455654 46899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEe
Q 004537 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (746)
Q Consensus 298 GGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~ 377 (746)
|||||||+|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. ++.+.||++++|++|+++..
T Consensus 408 gG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~-~~~~~~d~v~~l~~G~i~~~ 486 (506)
T PRK13549 408 GGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELP-EVLGLSDRVLVMHEGKLKGD 486 (506)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEE
Confidence 99999999999999999999999999999999999999999999888999999999975 57789999999999999999
Q ss_pred cCHHHH
Q 004537 378 GKASEA 383 (746)
Q Consensus 378 G~~~~~ 383 (746)
|+++++
T Consensus 487 ~~~~~~ 492 (506)
T PRK13549 487 LINHNL 492 (506)
T ss_pred eccccC
Confidence 987654
|
|
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-39 Score=333.59 Aligned_cols=208 Identities=26% Similarity=0.452 Sum_probs=170.2
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (746)
.++++|++++|. ..++.+|+|+||++++||+++|+||||||||||+++|+|.. ++.+|+|.++|.++..
T Consensus 2 ~l~~~~l~~~~~------~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~--~~~~G~i~~~g~~~~~~~~ 73 (221)
T cd03244 2 DIEFKNVSLRYR------PNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLV--ELSSGSILIDGVDISKIGL 73 (221)
T ss_pred cEEEEEEEEecC------CCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCC--CCCCCEEEECCEEhHhCCH
Confidence 378999999982 12357999999999999999999999999999999999954 3568999999998742
Q ss_pred -hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCcccc-------ccccCccccCCC
Q 004537 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQD-------TMIGGSFVRGVS 297 (746)
Q Consensus 226 -~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~-------~~vg~~~~~~LS 297 (746)
.+++.++|++|++.+++ .||+||+.+.. ... .+++.+.++.+++.+..+ +.. +..+..||
T Consensus 74 ~~~~~~i~~~~q~~~l~~-~tv~enl~~~~------~~~----~~~~~~~~~~~~l~~~~~~l~~~l~~~~-~~~~~~LS 141 (221)
T cd03244 74 HDLRSRISIIPQDPVLFS-GTIRSNLDPFG------EYS----DEELWQALERVGLKEFVESLPGGLDTVV-EEGGENLS 141 (221)
T ss_pred HHHhhhEEEECCCCcccc-chHHHHhCcCC------CCC----HHHHHHHHHHhCcHHHHHhccccccccc-ccCCCcCC
Confidence 45678999999999886 59999997531 111 123455566666544322 222 23567899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEe
Q 004537 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (746)
Q Consensus 298 GGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~ 377 (746)
||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++.+ ++|||+++|++.. + ..||++++|++|++++.
T Consensus 142 ~G~~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~-~-~~~d~i~~l~~g~~~~~ 218 (221)
T cd03244 142 VGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFK-DCTVLTIAHRLDT-I-IDSDRILVLDKGRVVEF 218 (221)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHHH-H-hhCCEEEEEECCeEEec
Confidence 9999999999999999999999999999999999999999999865 7899999999753 4 45999999999999988
Q ss_pred cC
Q 004537 378 GK 379 (746)
Q Consensus 378 G~ 379 (746)
|+
T Consensus 219 ~~ 220 (221)
T cd03244 219 DS 220 (221)
T ss_pred CC
Confidence 76
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-39 Score=370.74 Aligned_cols=223 Identities=26% Similarity=0.447 Sum_probs=184.9
Q ss_pred ceEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEEC-CEe---C
Q 004537 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYN-DHP---Y 223 (746)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~-G~~---~ 223 (746)
..|+++||+++|... ..+++.+|+|+||+|++||+++|+||||||||||+|+|+|.. ++.+|+|.++ |.+ +
T Consensus 278 ~~l~~~~l~~~~~~~---~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~--~p~~G~i~~~~g~~~~~~ 352 (520)
T TIGR03269 278 PIIKVRNVSKRYISV---DRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVL--EPTSGEVNVRVGDEWVDM 352 (520)
T ss_pred ceEEEeccEEEeccC---CCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC--CCCCeEEEEecCCccccc
Confidence 369999999998310 012357999999999999999999999999999999999964 3568999996 532 2
Q ss_pred Ch-------hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCc-----cccccccCc
Q 004537 224 SK-------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-----CQDTMIGGS 291 (746)
Q Consensus 224 ~~-------~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-----~~~~~vg~~ 291 (746)
.. ..+++++||+|++.+++.+||+||+.+..... .+.+..++++.++++.+||.+ ..++
T Consensus 353 ~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~----- 423 (520)
T TIGR03269 353 TKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLE----LPDELARMKAVITLKMVGFDEEKAEEILDK----- 423 (520)
T ss_pred cccchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcC----CCHHHHHHHHHHHHHhCCCCCccchhhhhC-----
Confidence 11 23567999999999999999999998764321 223334567889999999974 2343
Q ss_pred cccCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEe
Q 004537 292 FVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLG 370 (746)
Q Consensus 292 ~~~~LSGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~ 370 (746)
.+.+|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++ |+|||++||++. .+.+.||++++|+
T Consensus 424 ~~~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~d~i~~l~ 502 (520)
T TIGR03269 424 YPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMD-FVLDVCDRAALMR 502 (520)
T ss_pred ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhCCEEEEEE
Confidence 45789999999999999999999999999999999999999999999999765 899999999975 5778999999999
Q ss_pred CCeEEEecCHHHHHH
Q 004537 371 KGSLLYFGKASEAMA 385 (746)
Q Consensus 371 ~G~iv~~G~~~~~~~ 385 (746)
+|++++.|+++++.+
T Consensus 503 ~G~i~~~g~~~~~~~ 517 (520)
T TIGR03269 503 DGKIVKIGDPEEIVE 517 (520)
T ss_pred CCEEEEECCHHHHHh
Confidence 999999999888653
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=322.93 Aligned_cols=220 Identities=25% Similarity=0.457 Sum_probs=194.2
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCC----
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---- 224 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~---- 224 (746)
+++++||+++| +++.+|+|+|++|++|.+++|+|||||||||||.+++ |+.. .++|+|+++|.++.
T Consensus 1 MI~i~nv~K~y--------~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~s-RL~~-~d~G~i~i~g~~~~~~~s 70 (252)
T COG4604 1 MITIENVSKSY--------GTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMS-RLLK-KDSGEITIDGLELTSTPS 70 (252)
T ss_pred CeeehhhhHhh--------CCEEeeccceeeecCCceeEEECCCCccHHHHHHHHH-Hhcc-ccCceEEEeeeecccCCh
Confidence 36889999998 5778999999999999999999999999999999999 5653 46899999999985
Q ss_pred hhccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHH
Q 004537 225 KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (746)
Q Consensus 225 ~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv 304 (746)
+++.++++..-|+..+-..+||+|-+.|+....... ....+++..+++.++.++|++..|.. ..+||||||||.
T Consensus 71 ~~LAk~lSILkQ~N~i~~rlTV~dLv~FGRfPYSqG-Rlt~eD~~~I~~aieyl~L~~l~dry-----Ld~LSGGQrQRA 144 (252)
T COG4604 71 KELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQG-RLTKEDRRIINEAIEYLHLEDLSDRY-----LDELSGGQRQRA 144 (252)
T ss_pred HHHHHHHHHHHhhchhhheeEHHHHhhcCCCcccCC-CCchHHHHHHHHHHHHhcccchHHHh-----HHhcccchhhhh
Confidence 357788999999999988999999999985332222 23456677899999999999888754 468999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHH
Q 004537 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (746)
Q Consensus 305 ~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 383 (746)
-||+.|+.+.+.++||||.++||-..+.++|+.|++++++ |+||+++.||... ...++|+|+-|++|+++..|+++|+
T Consensus 145 fIAMVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINf-AS~YsD~IVAlK~G~vv~~G~~~ei 223 (252)
T COG4604 145 FIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINF-ASCYSDHIVALKNGKVVKQGSPDEI 223 (252)
T ss_pred hhheeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccH-HHhhhhheeeecCCEEEecCCHHHh
Confidence 9999999999999999999999999999999999999876 9999999999874 5578899999999999999999998
Q ss_pred HH
Q 004537 384 MA 385 (746)
Q Consensus 384 ~~ 385 (746)
++
T Consensus 224 i~ 225 (252)
T COG4604 224 IQ 225 (252)
T ss_pred cC
Confidence 64
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-39 Score=357.43 Aligned_cols=216 Identities=26% Similarity=0.454 Sum_probs=192.2
Q ss_pred ceEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCC---
Q 004537 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS--- 224 (746)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~--- 224 (746)
..++++|++++| +..++|+||||++++||++||+|.||||||||+|+|+|.. ++++|+|.+||++..
T Consensus 7 ~ll~~~~i~K~F--------ggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~--~p~~G~I~~~G~~~~~~s 76 (500)
T COG1129 7 PLLELRGISKSF--------GGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVY--PPDSGEILIDGKPVAFSS 76 (500)
T ss_pred ceeeeecceEEc--------CCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcc--cCCCceEEECCEEccCCC
Confidence 369999999998 5678999999999999999999999999999999999953 356999999999874
Q ss_pred --hhccCcEEEEecCCcCCCCCCHHHHHHHHHhccC-CCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHH
Q 004537 225 --KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRL-PNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301 (746)
Q Consensus 225 --~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~-~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGer 301 (746)
+.....|+.|+|+..|+|+|||.|||.++...+. ..-++.....+++.++|+.+|+....++.+ .+||+|||
T Consensus 77 p~~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v-----~~Lsiaqr 151 (500)
T COG1129 77 PRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLV-----GDLSIAQR 151 (500)
T ss_pred HHHHHhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhh-----hhCCHHHH
Confidence 1345679999999999999999999998865433 123566777888999999999964466665 47999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecC
Q 004537 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (746)
Q Consensus 302 qRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (746)
|.|.|||||..+++|||||||||+|+......+.+.+++|.++|.+||++||++. ++++.||||.||.||+.+..++
T Consensus 152 Q~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~-Ei~~i~DritVlRDG~~v~~~~ 228 (500)
T COG1129 152 QMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLD-EVFEIADRITVLRDGRVVGTRP 228 (500)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHH-HHHHhcCEEEEEeCCEEeeecc
Confidence 9999999999999999999999999999999999999999999999999999975 7999999999999999998877
|
|
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-39 Score=337.57 Aligned_cols=202 Identities=25% Similarity=0.464 Sum_probs=172.5
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCChhcc
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~ 228 (746)
.|+++||+++| +++.+|+|+||+|++||+++|+||||||||||+++|+|.+ ++.+|+|.++| +
T Consensus 4 ~l~~~~l~~~~--------~~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~--~p~~G~i~~~~-------~ 66 (251)
T PRK09544 4 LVSLENVSVSF--------GQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLV--APDEGVIKRNG-------K 66 (251)
T ss_pred EEEEeceEEEE--------CCceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC--CCCceEEEECC-------c
Confidence 58999999998 2457999999999999999999999999999999999964 34689999987 2
Q ss_pred CcEEEEecCCcCCCC--CCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHH
Q 004537 229 SKIGFVTQDDVLFPH--LTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (746)
Q Consensus 229 ~~i~yv~Q~~~l~~~--lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~I 306 (746)
..++|++|++.+++. .|+.+++.+. + ... .+++.++++.+||.+..++. +..||||||||++|
T Consensus 67 ~~i~~v~q~~~~~~~l~~~~~~~~~~~-----~-~~~----~~~~~~~l~~~gl~~~~~~~-----~~~LSgGq~qrv~l 131 (251)
T PRK09544 67 LRIGYVPQKLYLDTTLPLTVNRFLRLR-----P-GTK----KEDILPALKRVQAGHLIDAP-----MQKLSGGETQRVLL 131 (251)
T ss_pred cCEEEeccccccccccChhHHHHHhcc-----c-ccc----HHHHHHHHHHcCChHHHhCC-----hhhCCHHHHHHHHH
Confidence 469999999887765 3788877542 1 111 24567889999998776654 46899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHH
Q 004537 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (746)
Q Consensus 307 A~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (746)
||+|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+.||++++|++ ++++.|+++++.
T Consensus 132 aral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~-~i~~~~d~i~~l~~-~i~~~g~~~~~~ 208 (251)
T PRK09544 132 ARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLH-LVMAKTDEVLCLNH-HICCSGTPEVVS 208 (251)
T ss_pred HHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEECC-ceEeeCCHHHHh
Confidence 99999999999999999999999999999999999765 899999999975 57788999999965 799999988764
|
|
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-39 Score=324.21 Aligned_cols=194 Identities=25% Similarity=0.393 Sum_probs=165.0
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---h
Q 004537 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---S 226 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---~ 226 (746)
++++|++++| +++.+|+|+|+++++||+++|+||||||||||+++|+|.. ++.+|+|.++|.++.. .
T Consensus 1 l~~~~l~~~~--------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~--~~~~G~i~~~g~~~~~~~~~ 70 (198)
T TIGR01189 1 LAARNLACSR--------GERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLL--RPDSGEVRWNGTALAEQRDE 70 (198)
T ss_pred CEEEEEEEEE--------CCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC--CCCccEEEECCEEcccchHH
Confidence 4689999988 3457999999999999999999999999999999999954 3568999999998642 3
Q ss_pred ccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHH
Q 004537 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (746)
Q Consensus 227 ~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~I 306 (746)
.++.++|++|++.+++.+||.||+.+...... . .++++.++++.++|.+..++. +..||||||||++|
T Consensus 71 ~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~-----~--~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~l 138 (198)
T TIGR01189 71 PHRNILYLGHLPGLKPELSALENLHFWAAIHG-----G--AQRTIEDALAAVGLTGFEDLP-----AAQLSAGQQRRLAL 138 (198)
T ss_pred hhhheEEeccCcccccCCcHHHHHHHHHHHcC-----C--cHHHHHHHHHHcCCHHHhcCC-----hhhcCHHHHHHHHH
Confidence 45789999999989888999999988654321 1 134577889999998776654 46899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEE
Q 004537 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLIL 368 (746)
Q Consensus 307 A~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~v 368 (746)
||+|+.+|++++|||||+|||+.++..+.+.|++++++|+|+|++||++.. -.+++++.
T Consensus 139 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~---~~~~~~~~ 197 (198)
T TIGR01189 139 ARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLG---LVEARELR 197 (198)
T ss_pred HHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEccccc---ccceEEee
Confidence 999999999999999999999999999999999998779999999999754 34677664
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-39 Score=332.81 Aligned_cols=202 Identities=26% Similarity=0.373 Sum_probs=168.6
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCChhccC
Q 004537 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKS 229 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~ 229 (746)
+..+|++++| +++++|+|+||+|++||+++|+||||||||||+++|+|.. ++.+|+|.++|+++..
T Consensus 23 l~~~~~~~~~--------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~--~p~~G~i~~~g~~~~~---- 88 (224)
T cd03220 23 LGILGRKGEV--------GEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIY--PPDSGTVTVRGRVSSL---- 88 (224)
T ss_pred hhhhhhhhhc--------CCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC--CCCceEEEECCEEchh----
Confidence 5667777766 4567999999999999999999999999999999999954 3568999999987531
Q ss_pred cEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHHHH
Q 004537 230 KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNE 309 (746)
Q Consensus 230 ~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~a 309 (746)
..+...+.+.+||+||+.+..... ....++.++++.++++.++|++..++.+ ++||||||||++|||+
T Consensus 89 ----~~~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~lara 156 (224)
T cd03220 89 ----LGLGGGFNPELTGRENIYLNGRLL---GLSRKEIDEKIDEIIEFSELGDFIDLPV-----KTYSSGMKARLAFAIA 156 (224)
T ss_pred ----hcccccCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHHHHHHHHH
Confidence 111234456789999999875432 1233445567888999999987777654 5899999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEec
Q 004537 310 IIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (746)
Q Consensus 310 L~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G 378 (746)
|+.+|+++||||||+|||+.++..+.+.|++++++|+|||+++|++. ++.+.+|++++|++|++++.|
T Consensus 157 l~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 157 TALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPS-SIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999999999999877899999999975 466789999999999998765
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-39 Score=338.67 Aligned_cols=217 Identities=23% Similarity=0.366 Sum_probs=172.3
Q ss_pred ceEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh--
Q 004537 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (746)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (746)
..|+++|++++|. ..++.+|+|+|+++++||+++|+|+||||||||+++|+|.. ++.+|+|.++|+++..
T Consensus 18 ~~i~~~~l~~~~~------~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~--~~~~G~i~i~g~~i~~~~ 89 (257)
T cd03288 18 GEIKIHDLCVRYE------NNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMV--DIFDGKIVIDGIDISKLP 89 (257)
T ss_pred ceEEEEEEEEEeC------CCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHccc--CCCCCeEEECCEEhhhCC
Confidence 3699999999982 12357999999999999999999999999999999999964 3568999999998743
Q ss_pred --hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHH-----HHHHHHHHHHcCCCccccccccCccccCCCH
Q 004537 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQK-----EKRAIDVINELGLERCQDTMIGGSFVRGVSG 298 (746)
Q Consensus 226 --~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~-----~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSG 298 (746)
..++.++||+|++.+++ .|++||+.... ....... ...+.+.++.+ +...++.++ ...+.|||
T Consensus 90 ~~~~~~~i~~v~q~~~l~~-~tv~~nl~~~~------~~~~~~~~~~l~~~~l~~~~~~~--~~~l~~~~~-~~~~~LS~ 159 (257)
T cd03288 90 LHTLRSRLSIILQDPILFS-GSIRFNLDPEC------KCTDDRLWEALEIAQLKNMVKSL--PGGLDAVVT-EGGENFSV 159 (257)
T ss_pred HHHHhhhEEEECCCCcccc-cHHHHhcCcCC------CCCHHHHHHHHHHhCcHHHHhhc--ccccCcEec-cCCCcCCH
Confidence 35678999999998887 59999986421 1111111 11223334443 112223332 24568999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEec
Q 004537 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (746)
Q Consensus 299 GerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G 378 (746)
|||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++. +++|||+++|++.. +. .||++++|++|++++.|
T Consensus 160 G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~-~~~tiii~sh~~~~-~~-~~dri~~l~~G~i~~~g 236 (257)
T cd03288 160 GQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAF-ADRTVVTIAHRVST-IL-DADLVLVLSRGILVECD 236 (257)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhc-CCCEEEEEecChHH-HH-hCCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999999999999999875 48999999999864 44 49999999999999999
Q ss_pred CHHHHHH
Q 004537 379 KASEAMA 385 (746)
Q Consensus 379 ~~~~~~~ 385 (746)
+++++.+
T Consensus 237 ~~~~~~~ 243 (257)
T cd03288 237 TPENLLA 243 (257)
T ss_pred CHHHHHh
Confidence 9988754
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-39 Score=320.36 Aligned_cols=171 Identities=36% Similarity=0.634 Sum_probs=153.1
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh----
Q 004537 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (746)
++++|++++| +++++|+|+|+++++||+++|+||||||||||+++|+|.. ++.+|+|.++|+++..
T Consensus 1 i~~~~l~~~~--------~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~--~~~~G~i~~~g~~~~~~~~~ 70 (178)
T cd03229 1 LELKNVSKRY--------GQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLE--EPDSGSILIDGEDLTDLEDE 70 (178)
T ss_pred CEEEEEEEEE--------CCeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC--CCCceEEEECCEEccccchh
Confidence 4689999988 2356999999999999999999999999999999999954 3468999999988642
Q ss_pred --hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHH
Q 004537 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (746)
Q Consensus 226 --~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqR 303 (746)
..++.++|++|++.+++.+|++||+.+. ||||||||
T Consensus 71 ~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~------------------------------------------lS~G~~qr 108 (178)
T cd03229 71 LPPLRRRIGMVFQDFALFPHLTVLENIALG------------------------------------------LSGGQQQR 108 (178)
T ss_pred HHHHhhcEEEEecCCccCCCCCHHHheeec------------------------------------------CCHHHHHH
Confidence 3467899999999999889999997642 99999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCe
Q 004537 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGS 373 (746)
Q Consensus 304 v~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~ 373 (746)
++|||+|+.+|++++|||||+|||+.++..+.+.|++++++ |+|+|+++|++. ++.+.||++++|++|+
T Consensus 109 ~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 109 VALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLD-EAARLADRVVVLRDGK 178 (178)
T ss_pred HHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEeCCC
Confidence 99999999999999999999999999999999999999887 899999999975 4667899999999985
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-40 Score=419.24 Aligned_cols=214 Identities=21% Similarity=0.368 Sum_probs=183.3
Q ss_pred ceEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCC---
Q 004537 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS--- 224 (746)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~--- 224 (746)
..|+|+||+++|. .+.+++|+||||+|+|||.+||+|+||||||||+++|.|. ++ .+|+|.+||.|+.
T Consensus 1216 g~I~f~nVs~~Y~------~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl-~~--~~G~I~IdG~di~~i~ 1286 (1490)
T TIGR01271 1216 GQMDVQGLTAKYT------EAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRL-LS--TEGEIQIDGVSWNSVT 1286 (1490)
T ss_pred CeEEEEEEEEEeC------CCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhh-cC--CCcEEEECCEEcccCC
Confidence 4699999999993 2346899999999999999999999999999999999975 43 4899999999986
Q ss_pred -hhccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCC-------CccccccccCccccCC
Q 004537 225 -KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL-------ERCQDTMIGGSFVRGV 296 (746)
Q Consensus 225 -~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~vg~~~~~~L 296 (746)
+.+|++++|||||+.+|+. ||||||.... ..+ ++.+.++++..+| ++..|+.+|+. ...|
T Consensus 1287 ~~~lR~~is~IpQdp~LF~G-TIR~NLdp~~------~~t----deei~~aL~~~~L~~~i~~lp~GLdt~v~e~-G~nL 1354 (1490)
T TIGR01271 1287 LQTWRKAFGVIPQKVFIFSG-TFRKNLDPYE------QWS----DEEIWKVAEEVGLKSVIEQFPDKLDFVLVDG-GYVL 1354 (1490)
T ss_pred HHHHHhceEEEeCCCccCcc-CHHHHhCccc------CCC----HHHHHHHHHHCCCHHHHHhCccccccccccC-CCcC
Confidence 3578999999999999985 9999996421 122 2345566666554 45678888853 4569
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEE
Q 004537 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (746)
Q Consensus 297 SGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~ 376 (746)
|||||||++|||||+++|+|||||||||+||+.+...|.+.|++..+ ++|||+++|+++. ...||+|++|++|+|++
T Consensus 1355 SgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~-~~TvI~IaHRl~t--i~~~DrIlvL~~G~ivE 1431 (1490)
T TIGR01271 1355 SNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFS-NCTVILSEHRVEA--LLECQQFLVIEGSSVKQ 1431 (1490)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC-CCEEEEEecCHHH--HHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999998754 8999999999864 46699999999999999
Q ss_pred ecCHHHHHH
Q 004537 377 FGKASEAMA 385 (746)
Q Consensus 377 ~G~~~~~~~ 385 (746)
.|+|+++++
T Consensus 1432 ~g~p~~Ll~ 1440 (1490)
T TIGR01271 1432 YDSIQKLLN 1440 (1490)
T ss_pred eCCHHHHHc
Confidence 999999874
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-39 Score=320.16 Aligned_cols=175 Identities=33% Similarity=0.605 Sum_probs=153.9
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---h
Q 004537 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---S 226 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---~ 226 (746)
|+++|++++|. ..++++|+|+|+++++||+++|+||||||||||+++|+|.. ++.+|+|.++|.++.. .
T Consensus 1 i~~~~~~~~~~------~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~--~~~~G~i~~~g~~~~~~~~~ 72 (178)
T cd03247 1 LSINNVSFSYP------EQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDL--KPQQGEITLDGVPVSDLEKA 72 (178)
T ss_pred CEEEEEEEEeC------CCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccC--CCCCCEEEECCEEHHHHHHH
Confidence 47899999882 12246999999999999999999999999999999999954 3568999999997642 3
Q ss_pred ccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHH
Q 004537 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (746)
Q Consensus 227 ~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~I 306 (746)
+++.++|++|++.+++ .|++||+ +..||||||||++|
T Consensus 73 ~~~~i~~~~q~~~~~~-~tv~~~i------------------------------------------~~~LS~G~~qrv~l 109 (178)
T cd03247 73 LSSLISVLNQRPYLFD-TTLRNNL------------------------------------------GRRFSGGERQRLAL 109 (178)
T ss_pred HHhhEEEEccCCeeec-ccHHHhh------------------------------------------cccCCHHHHHHHHH
Confidence 4678999999998886 6999987 24799999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEec
Q 004537 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (746)
Q Consensus 307 A~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G 378 (746)
||+|+.+|++|+|||||+|||+.++..+++.|+++. +++|||+++|++.. + ..||++++|++|++++.|
T Consensus 110 aral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~-~-~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 110 ARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVL-KDKTLIWITHHLTG-I-EHMDKILFLENGKIIMQG 178 (178)
T ss_pred HHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH-H-HhCCEEEEEECCEEEecC
Confidence 999999999999999999999999999999999986 48999999999763 4 569999999999998765
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-39 Score=324.60 Aligned_cols=193 Identities=26% Similarity=0.393 Sum_probs=165.1
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---h
Q 004537 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---S 226 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---~ 226 (746)
|+++|++++| +++++|+|+|+++++||+++|+||||||||||+++|+|.. ++.+|+|.++|+++.. .
T Consensus 2 l~~~~l~~~~--------~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~--~~~~G~v~~~g~~~~~~~~~ 71 (200)
T PRK13540 2 LDVIELDFDY--------HDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLL--NPEKGEILFERQSIKKDLCT 71 (200)
T ss_pred EEEEEEEEEe--------CCeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCC--CCCCeeEEECCCccccCHHH
Confidence 7899999998 3457999999999999999999999999999999999954 3568999999988742 3
Q ss_pred ccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHH
Q 004537 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (746)
Q Consensus 227 ~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~I 306 (746)
++++++|++|++.+++.+||+||+.+..... . .+.++.++++.+++++..+.. +..||||||||++|
T Consensus 72 ~~~~i~~~~q~~~~~~~~tv~~~~~~~~~~~------~--~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~~rv~l 138 (200)
T PRK13540 72 YQKQLCFVGHRSGINPYLTLRENCLYDIHFS------P--GAVGITELCRLFSLEHLIDYP-----CGLLSSGQKRQVAL 138 (200)
T ss_pred HHhheEEeccccccCcCCCHHHHHHHHHhcC------c--chHHHHHHHHHcCCchhhhCC-----hhhcCHHHHHHHHH
Confidence 5678999999999988899999999864211 1 124678899999997765544 35799999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEE
Q 004537 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLI 367 (746)
Q Consensus 307 A~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~ 367 (746)
||+|+.+|++|+|||||+|||+.++..+.+.|++++++|.|||+++|++.. .+.+|..+
T Consensus 139 aral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~--~~~~d~~~ 197 (200)
T PRK13540 139 LRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLP--LNKADYEE 197 (200)
T ss_pred HHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchh--ccccchhh
Confidence 999999999999999999999999999999999987779999999999753 46677654
|
|
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-39 Score=334.01 Aligned_cols=211 Identities=32% Similarity=0.521 Sum_probs=169.3
Q ss_pred ceEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh--
Q 004537 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (746)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (746)
..++++|++++|.. ..++.+|+|+|++|++||+++|+||||||||||+++|+|.. ++.+|+|.++|+++..
T Consensus 10 ~~l~~~~l~~~~~~-----~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~--~~~~G~i~~~g~~~~~~~ 82 (226)
T cd03248 10 GIVKFQNVTFAYPT-----RPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFY--QPQGGQVLLDGKPISQYE 82 (226)
T ss_pred ceEEEEEEEEEeCC-----CCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCc--CCCCcEEEECCCchHHcC
Confidence 36999999999831 11246999999999999999999999999999999999954 3568999999987642
Q ss_pred --hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHc--CCCccccccccCccccCCCHHHH
Q 004537 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL--GLERCQDTMIGGSFVRGVSGGER 301 (746)
Q Consensus 226 --~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l--gL~~~~~~~vg~~~~~~LSGGer 301 (746)
..++.++|++|++.+++ .||+||+.++..........+......+++.++.+ |+.+..+. .++.||||||
T Consensus 83 ~~~~~~~i~~~~q~~~l~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~-----~~~~LSgG~~ 156 (226)
T cd03248 83 HKYLHSKVSLVGQEPVLFA-RSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGE-----KGSQLSGGQK 156 (226)
T ss_pred HHHHHhhEEEEecccHHHh-hhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhc-----CCCcCCHHHH
Confidence 34567999999998886 59999998754211000000111122356778888 66654443 3568999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeE
Q 004537 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (746)
Q Consensus 302 qRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~i 374 (746)
|||+|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|+|++||++.. + ..||++++|++|++
T Consensus 157 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~-~-~~~d~i~~l~~g~i 226 (226)
T cd03248 157 QRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPE-RRTVLVIAHRLST-V-ERADQILVLDGGRI 226 (226)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC-CCEEEEEECCHHH-H-HhCCEEEEecCCcC
Confidence 999999999999999999999999999999999999999865 6899999999764 5 45999999999974
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-39 Score=318.08 Aligned_cols=169 Identities=34% Similarity=0.617 Sum_probs=150.5
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh----
Q 004537 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (746)
++++|++++|. ..++.+++|+|+++++||+++|+||||||||||+++|+|.. ++.+|+|.++|+++.+
T Consensus 1 i~~~~l~~~~~------~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~--~~~~G~i~~~g~~~~~~~~~ 72 (173)
T cd03246 1 LEVENVSFRYP------GAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLL--RPTSGRVRLDGADISQWDPN 72 (173)
T ss_pred CEEEEEEEEcC------CCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhcc--CCCCCeEEECCEEcccCCHH
Confidence 47899999882 12356999999999999999999999999999999999954 3568999999998742
Q ss_pred hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHH
Q 004537 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (746)
Q Consensus 226 ~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~ 305 (746)
.++++++|++|++.+++ .||+||+ ||||||||++
T Consensus 73 ~~~~~i~~~~q~~~~~~-~tv~~~l---------------------------------------------LS~G~~qrv~ 106 (173)
T cd03246 73 ELGDHVGYLPQDDELFS-GSIAENI---------------------------------------------LSGGQRQRLG 106 (173)
T ss_pred HHHhheEEECCCCcccc-CcHHHHC---------------------------------------------cCHHHHHHHH
Confidence 34678999999998887 4999987 9999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeE
Q 004537 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (746)
Q Consensus 306 IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~i 374 (746)
|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|++. .+ +.||++++|++|++
T Consensus 107 la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~-~~~d~v~~l~~G~i 173 (173)
T cd03246 107 LARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPE-TL-ASADRILVLEDGRV 173 (173)
T ss_pred HHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HH-HhCCEEEEEECCCC
Confidence 999999999999999999999999999999999999877999999999975 34 67999999999974
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >PRK13546 teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-38 Score=331.19 Aligned_cols=218 Identities=22% Similarity=0.311 Sum_probs=182.4
Q ss_pred ceEEEEeEEEEEeecc------------ccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccE
Q 004537 148 IYLKFTDVTYKVILKG------------MTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGS 215 (746)
Q Consensus 148 ~~l~~~nvs~~~~~~~------------~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~ 215 (746)
..++++||++.|.... ......+++|+|+|++|++||+++|+||||||||||+++|+|.. ++.+|+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~--~p~~G~ 80 (264)
T PRK13546 3 VSVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSL--SPTVGK 80 (264)
T ss_pred ceEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCc--CCCceE
Confidence 3688999988886521 01123457999999999999999999999999999999999954 356899
Q ss_pred EEECCEeCChhccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccC
Q 004537 216 ITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRG 295 (746)
Q Consensus 216 I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~ 295 (746)
|.++|. +++++|++.+.+.+|+.||+.+..... ..+.++..+.++++++.++|.+..+.. ++.
T Consensus 81 I~~~g~---------~~~~~~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~ 143 (264)
T PRK13546 81 VDRNGE---------VSVIAISAGLSGQLTGIENIEFKMLCM---GFKRKEIKAMTPKIIEFSELGEFIYQP-----VKK 143 (264)
T ss_pred EEECCE---------EeEEecccCCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCC-----ccc
Confidence 999985 467788877788899999998765332 123444455677888888988766654 468
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEE
Q 004537 296 VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLL 375 (746)
Q Consensus 296 LSGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv 375 (746)
||||||||++||++|+.+|++|||||||+|||+.++..+++.|.++++.|+|||+++|++. .+.+.||++++|++|+++
T Consensus 144 LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~-~i~~~~d~i~~l~~G~i~ 222 (264)
T PRK13546 144 YSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLG-QVRQFCTKIAWIEGGKLK 222 (264)
T ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHHcCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999999999999877999999999965 567889999999999999
Q ss_pred EecCHHHHHH
Q 004537 376 YFGKASEAMA 385 (746)
Q Consensus 376 ~~G~~~~~~~ 385 (746)
+.|+.+++.+
T Consensus 223 ~~g~~~~~~~ 232 (264)
T PRK13546 223 DYGELDDVLP 232 (264)
T ss_pred EeCCHHHHHH
Confidence 9999988765
|
|
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-40 Score=378.64 Aligned_cols=203 Identities=23% Similarity=0.311 Sum_probs=170.7
Q ss_pred ceEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh--
Q 004537 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (746)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (746)
..++++||+|+|+ +++++|+|+|+++++||.+||+||||||||||+++|+|. ++ +.+|+|.+||+++.+
T Consensus 321 ~~i~~~~v~f~y~-------~~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~-~~-~~~G~i~~~g~~~~~~~ 391 (547)
T PRK10522 321 QTLELRNVTFAYQ-------DNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGL-YQ-PQSGEILLDGKPVTAEQ 391 (547)
T ss_pred ceEEEEEEEEEeC-------CCCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC-CC-CCCeEEEECCEECCCCC
Confidence 3699999999993 234699999999999999999999999999999999984 43 468999999999863
Q ss_pred --hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCc--cccCCCHHHH
Q 004537 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGS--FVRGVSGGER 301 (746)
Q Consensus 226 --~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~--~~~~LSGGer 301 (746)
.++++++||+||+.+|+. |++|| + + ...++.++++++.+++.+..+. ++. ....||||||
T Consensus 392 ~~~~~~~i~~v~q~~~lf~~-ti~~n---~-----~-----~~~~~~~~~~~~~~~l~~~~~~--~~~~~~G~~LSgGq~ 455 (547)
T PRK10522 392 PEDYRKLFSAVFTDFHLFDQ-LLGPE---G-----K-----PANPALVEKWLERLKMAHKLEL--EDGRISNLKLSKGQK 455 (547)
T ss_pred HHHHhhheEEEecChhHHHH-hhccc---c-----C-----chHHHHHHHHHHHcCCchhhhc--cccCCCCCCCCHHHH
Confidence 568899999999999974 88887 1 1 1233457788899988764432 221 1357999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCChHHHhccCEEEEEeCCeEEEe
Q 004537 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (746)
Q Consensus 302 qRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~-~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~ 377 (746)
||++|||||+++|++|+||||||+||+.++..+.+.|.+..+ .|+|+|+++|+++ ..+.||+|++|++|++++.
T Consensus 456 qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~--~~~~~d~i~~l~~G~i~e~ 530 (547)
T PRK10522 456 KRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDH--YFIHADRLLEMRNGQLSEL 530 (547)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechH--HHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999999999999999999987654 5899999999975 4678999999999999877
|
|
| >cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-39 Score=319.45 Aligned_cols=171 Identities=27% Similarity=0.538 Sum_probs=153.0
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (746)
.++++|++++| +|+|+|+++++||+++|+||||||||||+++|+|.. ++.+|+|.++|+++..
T Consensus 4 ~l~~~~l~~~~------------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~--~~~~G~i~~~g~~~~~~~~ 69 (182)
T cd03215 4 VLEVRGLSVKG------------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLR--PPASGEITLDGKPVTRRSP 69 (182)
T ss_pred EEEEeccEEEe------------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC--CCCCceEEECCEECCccCH
Confidence 58999999864 899999999999999999999999999999999954 3568999999998742
Q ss_pred --hccCcEEEEecCC---cCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHH
Q 004537 226 --SLKSKIGFVTQDD---VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGE 300 (746)
Q Consensus 226 --~~~~~i~yv~Q~~---~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGe 300 (746)
..++.++|++|++ .+++.+|++||+.+... |||||
T Consensus 70 ~~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~~~----------------------------------------LS~G~ 109 (182)
T cd03215 70 RDAIRAGIAYVPEDRKREGLVLDLSVAENIALSSL----------------------------------------LSGGN 109 (182)
T ss_pred HHHHhCCeEEecCCcccCcccCCCcHHHHHHHHhh----------------------------------------cCHHH
Confidence 2467899999984 57888999999986420 99999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeE
Q 004537 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (746)
Q Consensus 301 rqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~i 374 (746)
|||++|||+|+.+|++|||||||+|||+.++..+.+.|+++.++|+|+|+++|++. ++.+.||++++|++|++
T Consensus 110 ~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 110 QQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELD-ELLGLCDRILVMYEGRI 182 (182)
T ss_pred HHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEecCCcC
Confidence 99999999999999999999999999999999999999999877899999999975 57788999999999974
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-40 Score=381.29 Aligned_cols=210 Identities=21% Similarity=0.277 Sum_probs=170.7
Q ss_pred ceEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh--
Q 004537 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (746)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (746)
..++++||+|+|+.+. ..++++|+|+|+++++||+++|+||||||||||+++|+|. ++ +.+|+|.+||.++.+
T Consensus 336 ~~i~~~~v~f~y~~~~---~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~-~~-p~~G~i~~~g~~i~~~~ 410 (555)
T TIGR01194 336 DSIELKDVHMNPKAPE---GSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGL-YI-PQEGEILLDGAAVSADS 410 (555)
T ss_pred ceEEEEEEEEEeCCCC---CCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCC-CC-CCCcEEEECCEECCCCC
Confidence 4699999999994210 0124699999999999999999999999999999999984 44 458999999999863
Q ss_pred --hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccC-ccccCCCHHHHH
Q 004537 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGG-SFVRGVSGGERK 302 (746)
Q Consensus 226 --~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~-~~~~~LSGGerq 302 (746)
.++++++||+||+.+|+. |+++|+. + ...+++++++++.+++.+..+....+ .....|||||||
T Consensus 411 ~~~~~~~i~~v~q~~~lf~~-ti~~n~~-------~-----~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~q 477 (555)
T TIGR01194 411 RDDYRDLFSAIFADFHLFDD-LIGPDEG-------E-----HASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQK 477 (555)
T ss_pred HHHHHhhCcEEccChhhhhh-hhhcccc-------c-----chhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHH
Confidence 567889999999999975 8998841 1 12344577888888887644332211 123579999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH-HHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEe
Q 004537 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQ-DIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (746)
Q Consensus 303 Rv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~-~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~ 377 (746)
|++|||+|+++|+||+|||||++||+.++..+.+.+. ++..+|+|+|+++|+++ ..+.||+|++|++|++++.
T Consensus 478 RlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~--~~~~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 478 RLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQ--YFELADQIIKLAAGCIVKD 551 (555)
T ss_pred HHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH--HHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999998764 45556899999999985 4578999999999999864
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-39 Score=368.82 Aligned_cols=214 Identities=23% Similarity=0.430 Sum_probs=179.4
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (746)
.|+++|+++.| +.+|+|+||+|++||+++|+||||||||||+|+|+|.. ++.+|+|.++|+++..
T Consensus 265 ~l~~~~l~~~~----------~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~--~p~~G~I~~~g~~~~~~~~ 332 (510)
T PRK09700 265 VFEVRNVTSRD----------RKKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVD--KRAGGEIRLNGKDISPRSP 332 (510)
T ss_pred EEEEeCccccC----------CCcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC--cCCCCeEEECCEECCCCCH
Confidence 69999999754 13899999999999999999999999999999999954 3468999999988742
Q ss_pred --hccCcEEEEecC---CcCCCCCCHHHHHHHHHhcc---CCC--C-CcHHHHHHHHHHHHHHcCCC-ccccccccCccc
Q 004537 226 --SLKSKIGFVTQD---DVLFPHLTVKETLTYAALLR---LPN--T-LTKQQKEKRAIDVINELGLE-RCQDTMIGGSFV 293 (746)
Q Consensus 226 --~~~~~i~yv~Q~---~~l~~~lTV~E~l~~~~~~~---~~~--~-~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~ 293 (746)
..++.++||+|+ ..+++.+||+||+.++...+ ... . ......+++++++++.+||. +..++. +
T Consensus 333 ~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~ 407 (510)
T PRK09700 333 LDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQN-----I 407 (510)
T ss_pred HHHHHCCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCc-----c
Confidence 235679999998 46888899999998753211 000 0 12223345678999999996 666654 4
Q ss_pred cCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCe
Q 004537 294 RGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGS 373 (746)
Q Consensus 294 ~~LSGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~ 373 (746)
+.|||||||||+|||+|+.+|++|||||||+|||+.++..+++.|++++++|+|||++|||+. .+.+.||++++|++|+
T Consensus 408 ~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~-~~~~~~d~i~~l~~G~ 486 (510)
T PRK09700 408 TELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELP-EIITVCDRIAVFCEGR 486 (510)
T ss_pred ccCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHhhCCEEEEEECCE
Confidence 689999999999999999999999999999999999999999999999878999999999975 5778999999999999
Q ss_pred EEEecCH
Q 004537 374 LLYFGKA 380 (746)
Q Consensus 374 iv~~G~~ 380 (746)
+++.++.
T Consensus 487 i~~~~~~ 493 (510)
T PRK09700 487 LTQILTN 493 (510)
T ss_pred EEEEecC
Confidence 9988865
|
|
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=324.15 Aligned_cols=198 Identities=26% Similarity=0.430 Sum_probs=167.6
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh-hc
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-SL 227 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~-~~ 227 (746)
.++++||++.| +++.+|+|+||+|++||+++|+||||||||||+++|+|.. ++.+|+|.++|.++.. ..
T Consensus 2 ~l~~~~l~~~~--------~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~--~~~~G~i~~~g~~~~~~~~ 71 (207)
T PRK13539 2 MLEGEDLACVR--------GGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLL--PPAAGTIKLDGGDIDDPDV 71 (207)
T ss_pred EEEEEeEEEEE--------CCeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC--CCCCceEEECCEeCcchhh
Confidence 48999999998 2356999999999999999999999999999999999954 3468999999987642 25
Q ss_pred cCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHH
Q 004537 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (746)
Q Consensus 228 ~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA 307 (746)
++.++|++|++.+++.+||+||+.+...... . ..+++.++++.+||.+..+.. ++.||||||||++||
T Consensus 72 ~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~---~----~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~la 139 (207)
T PRK13539 72 AEACHYLGHRNAMKPALTVAENLEFWAAFLG---G----EELDIAAALEAVGLAPLAHLP-----FGYLSAGQKRRVALA 139 (207)
T ss_pred HhhcEEecCCCcCCCCCcHHHHHHHHHHhcC---C----cHHHHHHHHHHcCCHHHHcCC-----hhhcCHHHHHHHHHH
Confidence 6789999999988888999999987653321 1 123478899999998655543 468999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeC
Q 004537 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 371 (746)
Q Consensus 308 ~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~ 371 (746)
|+|+.+|++|||||||+|||+.+...+.+.|++++++|+|||++||++.. +. . |+++.++.
T Consensus 140 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~-~~-~-~~~~~~~~ 200 (207)
T PRK13539 140 RLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLG-LP-G-ARELDLGP 200 (207)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchh-hc-c-CcEEeecC
Confidence 99999999999999999999999999999999988779999999999753 43 3 88887744
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-38 Score=335.42 Aligned_cols=230 Identities=27% Similarity=0.496 Sum_probs=200.2
Q ss_pred CCceEEEEeEEEEEeeccccc---cccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEe
Q 004537 146 LPIYLKFTDVTYKVILKGMTS---SEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP 222 (746)
Q Consensus 146 ~~~~l~~~nvs~~~~~~~~~~---~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~ 222 (746)
.+..++.+||...|..++.-- .....++++||+++++||.++|+|.||||||||-.+|.+ +.. + +|+|.++|++
T Consensus 273 ~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allr-L~~-s-~G~I~F~G~~ 349 (534)
T COG4172 273 APVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLR-LIP-S-QGEIRFDGQD 349 (534)
T ss_pred CCceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHh-hcC-c-CceEEECCcc
Confidence 355799999999998764211 123579999999999999999999999999999999995 432 3 6999999999
Q ss_pred CCh-------hccCcEEEEecCCc--CCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccc
Q 004537 223 YSK-------SLKSKIGFVTQDDV--LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFV 293 (746)
Q Consensus 223 ~~~-------~~~~~i~yv~Q~~~--l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~ 293 (746)
+.. .+|+++-.|||||. |-|.+||.|-|.-+.....| ..+.+++++++.++++++||+.... ++++
T Consensus 350 i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~-~ls~~eR~~rv~~aL~EVGLDp~~r----~RYP 424 (534)
T COG4172 350 IDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEP-KLSAAERDQRVIEALEEVGLDPATR----NRYP 424 (534)
T ss_pred ccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCC-CCCHHHHHHHHHHHHHHcCCChhHh----hcCC
Confidence 852 36789999999985 88999999999988765543 4788999999999999999975322 4688
Q ss_pred cCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCC
Q 004537 294 RGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKG 372 (746)
Q Consensus 294 ~~LSGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G 372 (746)
+++|||||||++|||||+.+|++++||||||+||-.-+.+|+++|++|.++ |.+-++++||+. .+..+||+|+||.+|
T Consensus 425 hEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~-VvrAl~~~viVm~~G 503 (534)
T COG4172 425 HEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLA-VVRALCHRVIVMRDG 503 (534)
T ss_pred cccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHH-HHHHhhceEEEEeCC
Confidence 999999999999999999999999999999999999999999999999754 899999999976 577899999999999
Q ss_pred eEEEecCHHHHH
Q 004537 373 SLLYFGKASEAM 384 (746)
Q Consensus 373 ~iv~~G~~~~~~ 384 (746)
+||+.|+.+++.
T Consensus 504 kiVE~G~~~~if 515 (534)
T COG4172 504 KIVEQGPTEAVF 515 (534)
T ss_pred EEeeeCCHHHHh
Confidence 999999999885
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-39 Score=367.18 Aligned_cols=221 Identities=21% Similarity=0.376 Sum_probs=182.8
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (746)
.|+++|++++|.. .+++.+|+|+||+|++||+++|+||||||||||+|+|+|.. .|+.+|+|.++|+++..
T Consensus 257 ~l~~~~l~~~~~~-----~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~-~p~~~G~i~~~g~~~~~~~~ 330 (500)
T TIGR02633 257 ILEARNLTCWDVI-----NPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAY-PGKFEGNVFINGKPVDIRNP 330 (500)
T ss_pred eEEEeCCcccccc-----cccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCC-CCCCCeEEEECCEECCCCCH
Confidence 5999999987621 12346999999999999999999999999999999999965 33358999999988742
Q ss_pred --hccCcEEEEecCC---cCCCCCCHHHHHHHHHhccCC--CCCcHHHHHHHHHHHHHHcCCCc-cccccccCccccCCC
Q 004537 226 --SLKSKIGFVTQDD---VLFPHLTVKETLTYAALLRLP--NTLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVRGVS 297 (746)
Q Consensus 226 --~~~~~i~yv~Q~~---~l~~~lTV~E~l~~~~~~~~~--~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LS 297 (746)
..+++++||+|+. .+++.+||+||+.++...... ........+++++++++.++|.+ ..++. ++.||
T Consensus 331 ~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LS 405 (500)
T TIGR02633 331 AQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLP-----IGRLS 405 (500)
T ss_pred HHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCc-----cccCC
Confidence 2457899999995 588889999999876321110 01223344567889999999964 45544 46899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEe
Q 004537 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (746)
Q Consensus 298 GGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~ 377 (746)
|||||||+|||+|+.+|++|||||||+|||+.++..+++.|++++++|+|||++|||+. ++.+.||++++|++|+++..
T Consensus 406 gGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~-~~~~~~d~v~~l~~G~i~~~ 484 (500)
T TIGR02633 406 GGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELA-EVLGLSDRVLVIGEGKLKGD 484 (500)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEE
Confidence 99999999999999999999999999999999999999999999888999999999975 57789999999999999988
Q ss_pred cCHH
Q 004537 378 GKAS 381 (746)
Q Consensus 378 G~~~ 381 (746)
++.+
T Consensus 485 ~~~~ 488 (500)
T TIGR02633 485 FVNH 488 (500)
T ss_pred Eccc
Confidence 7654
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-39 Score=366.32 Aligned_cols=209 Identities=22% Similarity=0.359 Sum_probs=178.1
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (746)
.|+++||+++| +++.+|+|+|+++++||+++|+||||||||||+|+|+|.+ ++.+|+|.++|.++..
T Consensus 3 ~l~~~~l~~~~--------~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~--~p~~G~i~~~~~~~~~~~~ 72 (490)
T PRK10938 3 SLQISQGTFRL--------SDTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGEL--PLLSGERQSQFSHITRLSF 72 (490)
T ss_pred eEEEEeEEEEc--------CCeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccC--CCCCceEEECCcccccCCH
Confidence 48999999998 2346999999999999999999999999999999999964 3568999999976532
Q ss_pred -hccCcEEEEecCCcC--C-C-----CCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCC
Q 004537 226 -SLKSKIGFVTQDDVL--F-P-----HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGV 296 (746)
Q Consensus 226 -~~~~~i~yv~Q~~~l--~-~-----~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~L 296 (746)
..++.++|++|++.+ + + .+||+|++.+. ....++++++++.+||++..+.. +.+|
T Consensus 73 ~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~l~~~~l~~~~~~~-----~~~L 136 (490)
T PRK10938 73 EQLQKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDE-----------VKDPARCEQLAQQFGITALLDRR-----FKYL 136 (490)
T ss_pred HHHHHHhceeccCcchhhcccchhhccccHHHhcccc-----------hhHHHHHHHHHHHcCCHhhhhCC-----cccC
Confidence 234569999998643 1 1 46888887532 12345688999999998766654 4689
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEE
Q 004537 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (746)
Q Consensus 297 SGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~ 376 (746)
||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|++. .+.+.||++++|++|+++.
T Consensus 137 SgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~-~~~~~~d~v~~l~~G~i~~ 215 (490)
T PRK10938 137 STGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFD-EIPDFVQFAGVLADCTLAE 215 (490)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHH-HHHhhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999999999877999999999975 5778899999999999999
Q ss_pred ecCHHHHH
Q 004537 377 FGKASEAM 384 (746)
Q Consensus 377 ~G~~~~~~ 384 (746)
.|+++++.
T Consensus 216 ~~~~~~~~ 223 (490)
T PRK10938 216 TGEREEIL 223 (490)
T ss_pred eCCHHHHh
Confidence 99988754
|
|
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-38 Score=325.70 Aligned_cols=208 Identities=25% Similarity=0.400 Sum_probs=169.1
Q ss_pred EEEEeEEEEEeeccccccc-cccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEEC--CE--eCC
Q 004537 150 LKFTDVTYKVILKGMTSSE-EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYN--DH--PYS 224 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~-~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~--G~--~~~ 224 (746)
|+++||+++|..+. +.+ .+.+|+|+|++|++||+++|+||||||||||+++|+|.. . +.+|+|.++ |. ++.
T Consensus 2 l~~~~l~~~~~~~~--~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~-~-~~~G~i~~~~~g~~~~~~ 77 (224)
T TIGR02324 2 LEVEDLSKTFTLHQ--QGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANY-L-PDSGRILVRHEGAWVDLA 77 (224)
T ss_pred EEEEeeEEEeeccc--CCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCC-C-CCCCeEEEecCCCccchh
Confidence 78999999983210 011 247999999999999999999999999999999999954 3 458999998 42 432
Q ss_pred h-------hc-cCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCcc-ccccccCccccC
Q 004537 225 K-------SL-KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC-QDTMIGGSFVRG 295 (746)
Q Consensus 225 ~-------~~-~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~ 295 (746)
. .. ++.++|++|++.+++.+||+||+.+..... ........+++.++++.+||.+. .+. .+++
T Consensus 78 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~~ 149 (224)
T TIGR02324 78 QASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLER---GVPREAARARARELLARLNIPERLWHL-----PPAT 149 (224)
T ss_pred hcCHHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhhC-----Cccc
Confidence 1 12 357999999999999999999998865322 12334445678889999999753 343 3568
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEe
Q 004537 296 VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG 370 (746)
Q Consensus 296 LSGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~ 370 (746)
||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++. .+.+.||+++.+.
T Consensus 150 LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~-~~~~~~d~i~~~~ 223 (224)
T TIGR02324 150 FSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEE-VRELVADRVMDVT 223 (224)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcceeEecC
Confidence 9999999999999999999999999999999999999999999999877999999999954 4567899998763
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-38 Score=322.64 Aligned_cols=198 Identities=21% Similarity=0.402 Sum_probs=163.9
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (746)
.++++|++++|. ..++.+|+|+|+++++||+++|+||||||||||+++|+|.. ++.+|+|.++|.++..
T Consensus 6 ~l~~~~l~~~~~------~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~--~~~~G~i~~~g~~~~~~~~ 77 (207)
T cd03369 6 EIEVENLSVRYA------PDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFL--EAEEGKIEIDGIDISTIPL 77 (207)
T ss_pred eEEEEEEEEEeC------CCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhccc--CCCCCeEEECCEEhHHCCH
Confidence 589999999982 12247999999999999999999999999999999999954 3468999999998742
Q ss_pred -hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHH
Q 004537 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (746)
Q Consensus 226 -~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv 304 (746)
..++.++||+|++.+++ .||+||+.+.. .... +.+.+.++ + + ..+..||||||||+
T Consensus 78 ~~~~~~i~~v~q~~~~~~-~tv~~~l~~~~------~~~~----~~~~~~l~---~----~-----~~~~~LS~G~~qrv 134 (207)
T cd03369 78 EDLRSSLTIIPQDPTLFS-GTIRSNLDPFD------EYSD----EEIYGALR---V----S-----EGGLNLSQGQRQLL 134 (207)
T ss_pred HHHHhhEEEEecCCcccC-ccHHHHhcccC------CCCH----HHHHHHhh---c----c-----CCCCcCCHHHHHHH
Confidence 34678999999998887 59999997531 1121 12333333 2 2 23568999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCH
Q 004537 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380 (746)
Q Consensus 305 ~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~ 380 (746)
+|||+|+.+|+++||||||+|||+.++..+.+.|+++. +|+|+|++||++.. +. .||++++|++|+++..|++
T Consensus 135 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~th~~~~-~~-~~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 135 CLARALLKRPRVLVLDEATASIDYATDALIQKTIREEF-TNSTILTIAHRLRT-II-DYDKILVMDAGEVKEYDHP 207 (207)
T ss_pred HHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHH-Hh-hCCEEEEEECCEEEecCCC
Confidence 99999999999999999999999999999999999985 48999999999764 44 4999999999999988863
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-38 Score=317.01 Aligned_cols=177 Identities=32% Similarity=0.576 Sum_probs=151.3
Q ss_pred cccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh------hccCcEEEEecCC--cC
Q 004537 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK------SLKSKIGFVTQDD--VL 240 (746)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~------~~~~~i~yv~Q~~--~l 240 (746)
++.+|+|+|++|++||+++|+||||||||||+++|+|.. ++.+|+|.++|+++.. .+++.++|++|++ .+
T Consensus 4 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~--~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 81 (190)
T TIGR01166 4 GPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLL--RPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQL 81 (190)
T ss_pred ccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC--CCCceeEEECCEEccccccchHHHHhhEEEEecChhhcc
Confidence 457999999999999999999999999999999999964 3468999999998731 2456799999997 35
Q ss_pred CCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHHHHHhhCCCEEEEe
Q 004537 241 FPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLD 320 (746)
Q Consensus 241 ~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~illLD 320 (746)
++ .||+||+.+..... ..+.++..++++++++.+||++..++. ++.||||||||++|||+|+.+|++++||
T Consensus 82 ~~-~tv~~nl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~laral~~~p~llllD 152 (190)
T TIGR01166 82 FA-ADVDQDVAFGPLNL---GLSEAEVERRVREALTAVGASGLRERP-----THCLSGGEKKRVAIAGAVAMRPDVLLLD 152 (190)
T ss_pred cc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCchhhhhCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 54 79999999875422 123444556788999999998766654 4689999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCC
Q 004537 321 EPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPS 356 (746)
Q Consensus 321 EPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~ 356 (746)
|||+|||+.++..+.+.|++++++|+|||++||++.
T Consensus 153 EPt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~ 188 (190)
T TIGR01166 153 EPTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVD 188 (190)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeeccc
Confidence 999999999999999999999877999999999974
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=349.68 Aligned_cols=214 Identities=25% Similarity=0.339 Sum_probs=178.8
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCChhcc
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~ 228 (746)
.++++||++.|.. ...+.+|+|+||+|++|++++|+||||||||||+++|+|.. ++.+|+|.++|.+.
T Consensus 21 mL~lknL~~~~~~-----~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl--~P~sGeI~I~G~~~----- 88 (549)
T PRK13545 21 FDKLKDLFFRSKD-----GEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVT--MPNKGTVDIKGSAA----- 88 (549)
T ss_pred eeEEEEEEEecCC-----CccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCC--CCCceEEEECCEee-----
Confidence 5888999887721 12357999999999999999999999999999999999964 35689999999752
Q ss_pred CcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHHH
Q 004537 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGN 308 (746)
Q Consensus 229 ~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~ 308 (746)
++.+.+.+++.+||+||+.+..... ..+.++..+++.++++.++|.+..+.. ++.||||||||++|||
T Consensus 89 ----~i~~~~~l~~~lTV~EnL~l~~~~~---~~~~~e~~e~i~elLe~lgL~~~ld~~-----~~~LSGGQrQRVaLAr 156 (549)
T PRK13545 89 ----LIAISSGLNGQLTGIENIELKGLMM---GLTKEKIKEIIPEIIEFADIGKFIYQP-----VKTYSSGMKSRLGFAI 156 (549)
T ss_pred ----eEEeccccCCCCcHHHHHHhhhhhc---CCCHHHHHHHHHHHHHHcCChhHhhCC-----cccCCHHHHHHHHHHH
Confidence 2233445667789999998754322 123444556678899999998776654 4689999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHHHHH
Q 004537 309 EIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYF 387 (746)
Q Consensus 309 aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~~f 387 (746)
||+.+|++|||||||+|||+.++..+++.|++++++|+|||+++|++. .+.+.||++++|++|++++.|+++++..-|
T Consensus 157 AL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~-~i~~l~DrIivL~~GkIv~~G~~~el~~~~ 234 (549)
T PRK13545 157 SVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLS-QVKSFCTKALWLHYGQVKEYGDIKEVVDHY 234 (549)
T ss_pred HHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEECCHHHHHhhH
Confidence 999999999999999999999999999999999877999999999975 577889999999999999999999886544
|
|
| >TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-38 Score=323.77 Aligned_cols=197 Identities=28% Similarity=0.443 Sum_probs=163.7
Q ss_pred EEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEecCCcCCC--CCCHHHHHHHHHh
Q 004537 178 GSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFP--HLTVKETLTYAAL 255 (746)
Q Consensus 178 ~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~--~lTV~E~l~~~~~ 255 (746)
|++++||+++|+||||||||||+++|+|.. ++.+|+|.+||+++. ..+++++|++|++.+++ .+|+.||+.++..
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~--~~~~G~i~~~g~~~~-~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~ 77 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLI--PPAKGTVKVAGASPG-KGWRHIGYVPQRHEFAWDFPISVAHTVMSGRT 77 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCC--CCCCceEEECCccch-HhhCcEEEecccccccCCCCccHHHHHHhccc
Confidence 468999999999999999999999999954 346899999999864 34577999999987632 4799999987632
Q ss_pred ccCC-CCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 004537 256 LRLP-NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRI 334 (746)
Q Consensus 256 ~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i 334 (746)
.... ........++++.++++.+++.+..++. +.+||||||||++|||+|+.+|+++||||||+|||+.++..+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l 152 (223)
T TIGR03771 78 GHIGWLRRPCVADFAAVRDALRRVGLTELADRP-----VGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELL 152 (223)
T ss_pred cccccccCCcHHHHHHHHHHHHHhCCchhhcCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH
Confidence 1100 0011223345688899999998766654 458999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHH
Q 004537 335 VQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (746)
Q Consensus 335 ~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (746)
.+.|++++++|+|+|++||++. ++.+.||+++++ +|++++.|+++++.
T Consensus 153 ~~~l~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l-~G~i~~~~~~~~~~ 200 (223)
T TIGR03771 153 TELFIELAGAGTAILMTTHDLA-QAMATCDRVVLL-NGRVIADGTPQQLQ 200 (223)
T ss_pred HHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEE-CCEEEeecCHHHhc
Confidence 9999999877999999999975 577889999999 89999999988763
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. |
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-38 Score=361.37 Aligned_cols=214 Identities=23% Similarity=0.432 Sum_probs=179.2
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (746)
.++++|+++ .+|+|+||+|++||+++|+||||||||||+|+|+|.. ++.+|+|.++|+++..
T Consensus 257 ~l~~~~l~~-------------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~--~p~~G~I~~~g~~i~~~~~ 321 (501)
T PRK10762 257 RLKVDNLSG-------------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGAL--PRTSGYVTLDGHEVVTRSP 321 (501)
T ss_pred EEEEeCccc-------------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCC--CCCceEEEECCEECCCCCH
Confidence 578888862 3799999999999999999999999999999999964 2458999999988742
Q ss_pred --hccCcEEEEecCC---cCCCCCCHHHHHHHHHhccCC---CCCcHHHHHHHHHHHHHHcCCC-ccccccccCccccCC
Q 004537 226 --SLKSKIGFVTQDD---VLFPHLTVKETLTYAALLRLP---NTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGV 296 (746)
Q Consensus 226 --~~~~~i~yv~Q~~---~l~~~lTV~E~l~~~~~~~~~---~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~L 296 (746)
..+++++||+|++ .+++.+||+||+.+....... ......+.+++++++++.+||. +..++. +..|
T Consensus 322 ~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~L 396 (501)
T PRK10762 322 QDGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQA-----IGLL 396 (501)
T ss_pred HHHHHCCCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCc-----hhhC
Confidence 2356799999996 578889999999875321100 0122334456788999999995 555654 4689
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEE
Q 004537 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (746)
Q Consensus 297 SGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~ 376 (746)
||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+.+.||++++|++|+++.
T Consensus 397 SgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~-~~~~~~d~v~~l~~G~i~~ 475 (501)
T PRK10762 397 SGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMP-EVLGMSDRILVMHEGRISG 475 (501)
T ss_pred CHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHhhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999999999878999999999975 5778999999999999999
Q ss_pred ecCHHHH
Q 004537 377 FGKASEA 383 (746)
Q Consensus 377 ~G~~~~~ 383 (746)
.|+++++
T Consensus 476 ~~~~~~~ 482 (501)
T PRK10762 476 EFTREQA 482 (501)
T ss_pred EeccccC
Confidence 9987664
|
|
| >COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-39 Score=326.13 Aligned_cols=195 Identities=30% Similarity=0.497 Sum_probs=172.4
Q ss_pred eceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh--------hccCcEEEEecCCcCCCCCC
Q 004537 174 NGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--------SLKSKIGFVTQDDVLFPHLT 245 (746)
Q Consensus 174 ~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--------~~~~~i~yv~Q~~~l~~~lT 245 (746)
=++++..+.-.++||-|+||||||||+|+|+|... +++|.|.+||.-+.+ ..+|+|||||||..|||++|
T Consensus 15 l~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~r--PdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~t 92 (352)
T COG4148 15 LDANFTLPARGITALFGPSGSGKTSLINMIAGLTR--PDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYT 92 (352)
T ss_pred EEEeccCCCCceEEEecCCCCChhhHHHHHhccCC--ccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceE
Confidence 46778887757999999999999999999999653 468999999986532 24789999999999999999
Q ss_pred HHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 004537 246 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSG 325 (746)
Q Consensus 246 V~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~illLDEPTsg 325 (746)
|+.||.|+.... ..+..+++++.||++|..+. ++..|||||||||+|+|||+++|++|++|||.++
T Consensus 93 VrgNL~YG~~~~---------~~~~fd~iv~lLGI~hLL~R-----~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaS 158 (352)
T COG4148 93 VRGNLRYGMWKS---------MRAQFDQLVALLGIEHLLDR-----YPGTLSGGEKQRVAIGRALLTAPELLLMDEPLAS 158 (352)
T ss_pred Eecchhhhhccc---------chHhHHHHHHHhCcHHHHhh-----CCCccCcchhhHHHHHHHHhcCCCeeeecCchhh
Confidence 999999985321 33457788999999998885 4678999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHHH
Q 004537 326 LDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (746)
Q Consensus 326 LD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 385 (746)
||-..+.+++-.|.+|.++ ...|+.+||.+. |+.+++|+|++|++|++..+|+.+++..
T Consensus 159 LD~~RK~EilpylERL~~e~~IPIlYVSHS~~-Ev~RLAd~vV~le~GkV~A~g~~e~v~~ 218 (352)
T COG4148 159 LDLPRKREILPYLERLRDEINIPILYVSHSLD-EVLRLADRVVVLENGKVKASGPLEEVWG 218 (352)
T ss_pred cccchhhHHHHHHHHHHHhcCCCEEEEecCHH-HHHhhhheEEEecCCeEEecCcHHHHhc
Confidence 9999999999999999876 789999999965 6899999999999999999999999864
|
|
| >cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-38 Score=314.96 Aligned_cols=175 Identities=33% Similarity=0.586 Sum_probs=150.3
Q ss_pred EEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh----h
Q 004537 151 KFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----S 226 (746)
Q Consensus 151 ~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~----~ 226 (746)
+++||+++| +++.+|+|+|+++++||+++|+||||||||||+++|+|.. ++.+|+|.++|.++.. .
T Consensus 1 ~~~~l~~~~--------~~~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~--~~~~G~v~~~g~~~~~~~~~~ 70 (180)
T cd03214 1 EVENLSVGY--------GGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLL--KPSSGEILLDGKDLASLSPKE 70 (180)
T ss_pred CeeEEEEEE--------CCeeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCC--CCCCcEEEECCEECCcCCHHH
Confidence 478999988 2356999999999999999999999999999999999954 3568999999998742 2
Q ss_pred ccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHH
Q 004537 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (746)
Q Consensus 227 ~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~I 306 (746)
+++.++|++| +++.+|+.+..++ .++.||||||||++|
T Consensus 71 ~~~~i~~~~q-------------------------------------~l~~~gl~~~~~~-----~~~~LS~G~~qrl~l 108 (180)
T cd03214 71 LARKIAYVPQ-------------------------------------ALELLGLAHLADR-----PFNELSGGERQRVLL 108 (180)
T ss_pred HHHHHhHHHH-------------------------------------HHHHcCCHhHhcC-----CcccCCHHHHHHHHH
Confidence 3456788887 4556677654443 346899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEec
Q 004537 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (746)
Q Consensus 307 A~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G 378 (746)
||+|+.+|+++||||||+|||+.++..+.+.|++++++ |+|+|+++|++. ++.+.||++++|++|++++.|
T Consensus 109 aral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~-~~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 109 ARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLN-LAARYADRVILLKDGRIVAQG 180 (180)
T ss_pred HHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999999999999999776 899999999976 466889999999999998754
|
Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. |
| >COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-37 Score=307.70 Aligned_cols=231 Identities=29% Similarity=0.401 Sum_probs=199.8
Q ss_pred eEEEEeEEEEEeecccccccc-ccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh--
Q 004537 149 YLKFTDVTYKVILKGMTSSEE-KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~-~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (746)
.|+++||+.++ .+ +.||++||++|++||+.+||||||||||||.++|+|+-....++|+|.++|+++..
T Consensus 3 ~L~I~dLhv~v--------~~~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~ 74 (251)
T COG0396 3 MLEIKDLHVEV--------EGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELS 74 (251)
T ss_pred eeEEeeeEEEe--------cCchhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCC
Confidence 58999999987 34 58999999999999999999999999999999999965334578999999999852
Q ss_pred ---hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCc-cccccccCccccCCCHHHH
Q 004537 226 ---SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVRGVSGGER 301 (746)
Q Consensus 226 ---~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSGGer 301 (746)
..|..|...+|.|.=+|..|+.+.|..+...+....-...+..+++++.++.+++++ ..++.+. .++|||||
T Consensus 75 ~~ERAr~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN----~GFSGGEk 150 (251)
T COG0396 75 PDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVN----EGFSGGEK 150 (251)
T ss_pred HhHHHhcCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccC----CCcCcchH
Confidence 356779999999999999999999998875433221113456677889999999987 4555443 47999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhcc--CEEEEEeCCeEEEecC
Q 004537 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKF--DKLILLGKGSLLYFGK 379 (746)
Q Consensus 302 qRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~--D~i~vL~~G~iv~~G~ 379 (746)
||..|+..++.+|++.|||||-||||..+-+.+-+.++++...|.+++++||.. .+.++. |++.+|.+|+|+..|.
T Consensus 151 KR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~--rll~~i~pD~vhvl~~GrIv~sG~ 228 (251)
T COG0396 151 KRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQ--RLLDYIKPDKVHVLYDGRIVKSGD 228 (251)
T ss_pred HHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHH--HHHhhcCCCEEEEEECCEEEecCC
Confidence 999999999999999999999999999999999999999999999999999984 466766 9999999999999999
Q ss_pred HHHHHHHHHhcCCCC
Q 004537 380 ASEAMAYFSSIGCSP 394 (746)
Q Consensus 380 ~~~~~~~f~~~G~~~ 394 (746)
+ ++..+++.-||.|
T Consensus 229 ~-el~~~le~~gy~~ 242 (251)
T COG0396 229 P-ELAEELEEKGYDW 242 (251)
T ss_pred H-HHHHHHHHhchHH
Confidence 9 9999999999865
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-39 Score=409.99 Aligned_cols=342 Identities=19% Similarity=0.195 Sum_probs=225.9
Q ss_pred HHHHHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeeccccccceecchhchhhhh
Q 004537 12 RTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSGAAL 91 (746)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 91 (746)
++.++.-.+.++...|.+.+.++||.++.+....+++.+...+......+.....+......... ..-+.-++.|+.+
T Consensus 469 ~~~~~~~d~r~~~~~E~l~gi~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~fg~~~ 546 (1495)
T PLN03232 469 KEGLQWTDKRVGIINEILASMDTVKCYAWEKSFESRIQGIRNEELSWFRKAQLLSAFNSFILNSI--PVVVTLVSFGVFV 546 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Confidence 33345556677788899999999999999887777766433322222221111000000000000 0011123456666
Q ss_pred hhhcccccchhhhhcccc----cChhhhccCCC------CCCCCCcccccccCCCCCCCCCCCCCCceEEEEeEEEEEee
Q 004537 92 SRASSASLGLSFSFTGFT----MPPDEIADSKP------FSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFTDVTYKVIL 161 (746)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~nvs~~~~~ 161 (746)
...+.++.|..+++..+. .|...+..... .+..++.+-+...+...............++++|++|+|+.
T Consensus 547 v~~~~lt~g~vf~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~~~~~~~~~~~~~~~~~~I~~~~vsF~y~~ 626 (1495)
T PLN03232 547 LLGGDLTPARAFTSLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLSEERILAQNPPLQPGAPAISIKNGYFSWDS 626 (1495)
T ss_pred HhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccCCcCCCCCcEEEEeeEEEcCC
Confidence 666777777776664222 22221111100 01111111111111000000000011235999999999942
Q ss_pred ccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEecCCcCC
Q 004537 162 KGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLF 241 (746)
Q Consensus 162 ~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~ 241 (746)
..++++|+|+|++|++||.++|+||||||||||+++|.|.. + +.+|.+. .+++.|+||+|++.+|
T Consensus 627 -----~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~-~-~~~G~i~--------~~~~~Iayv~Q~p~Lf 691 (1495)
T PLN03232 627 -----KTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGEL-S-HAETSSV--------VIRGSVAYVPQVSWIF 691 (1495)
T ss_pred -----CCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-c-ccCCCEE--------EecCcEEEEcCccccc
Confidence 12467999999999999999999999999999999999854 3 3466552 3567899999999999
Q ss_pred CCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHc-------CCCccccccccCccccCCCHHHHHHHHHHHHHhhCC
Q 004537 242 PHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL-------GLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINP 314 (746)
Q Consensus 242 ~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l-------gL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p 314 (746)
+ .||+|||.|+.. .+++ +.+++++.. .|+++.+|.+|+.. ..||||||||++||||++++|
T Consensus 692 ~-gTIreNI~fg~~------~~~e----~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G-~~LSGGQkQRIaLARAly~~~ 759 (1495)
T PLN03232 692 N-ATVRENILFGSD------FESE----RYWRAIDVTALQHDLDLLPGRDLTEIGERG-VNISGGQKQRVSMARAVYSNS 759 (1495)
T ss_pred c-ccHHHHhhcCCc------cCHH----HHHHHHHHhCCHHHHHhCCCCCCceecCCC-cccCHHHHHHHHHHHHHhcCC
Confidence 7 599999999731 2222 223333322 35677889999764 469999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHH-HHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHHH
Q 004537 315 SLLFLDEPTSGLDSTTALRIVQM-LQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (746)
Q Consensus 315 ~illLDEPTsgLD~~~~~~i~~~-L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 385 (746)
+|++||||||+||++++.++++. ++.+. +++|+|++||+++ ..+.||+|++|++|++++.|+++++++
T Consensus 760 ~IlLLDEptSaLD~~t~~~I~~~~l~~~l-~~kT~IlvTH~~~--~l~~aD~Ii~L~~G~i~~~Gt~~eL~~ 828 (1495)
T PLN03232 760 DIYIFDDPLSALDAHVAHQVFDSCMKDEL-KGKTRVLVTNQLH--FLPLMDRIILVSEGMIKEEGTFAELSK 828 (1495)
T ss_pred CEEEEcCCccccCHHHHHHHHHHHhhhhh-cCCEEEEEECChh--hHHhCCEEEEEeCCEEEEecCHHHHHh
Confidence 99999999999999999988765 55443 5899999999986 367899999999999999999999874
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-38 Score=360.27 Aligned_cols=215 Identities=20% Similarity=0.372 Sum_probs=179.4
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (746)
.++++|+++ +.+++|+|++|++||+++|+||||||||||+|+|+|.. ++.+|+|.++|+++..
T Consensus 257 ~l~~~~~~~------------~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~--~p~~G~i~~~g~~~~~~~~ 322 (501)
T PRK11288 257 RLRLDGLKG------------PGLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGAT--RRTAGQVYLDGKPIDIRSP 322 (501)
T ss_pred EEEEecccc------------CCcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCC--cCCCceEEECCEECCCCCH
Confidence 578888863 14899999999999999999999999999999999964 3568999999988642
Q ss_pred --hccCcEEEEecCC---cCCCCCCHHHHHHHHHhccC-CCC--CcHHHHHHHHHHHHHHcCCC-ccccccccCccccCC
Q 004537 226 --SLKSKIGFVTQDD---VLFPHLTVKETLTYAALLRL-PNT--LTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGV 296 (746)
Q Consensus 226 --~~~~~i~yv~Q~~---~l~~~lTV~E~l~~~~~~~~-~~~--~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~L 296 (746)
..++.++|++|++ .+++.+||.||+.++..... +.. ......++.++++++.+++. +..++. +..|
T Consensus 323 ~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~L 397 (501)
T PRK11288 323 RDAIRAGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQL-----IMNL 397 (501)
T ss_pred HHHHhCCCEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCc-----cccC
Confidence 2356799999996 48888999999987532110 000 12233345688999999994 556654 4589
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEE
Q 004537 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (746)
Q Consensus 297 SGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~ 376 (746)
||||||||+|||+|+.+|++|||||||+|||+.++.++++.|++++++|.|||++|||+. ++.+.||++++|++|++++
T Consensus 398 SgGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~-~~~~~~d~i~~l~~g~i~~ 476 (501)
T PRK11288 398 SGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLP-EVLGVADRIVVMREGRIAG 476 (501)
T ss_pred CHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHhhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999999999888999999999975 5788999999999999999
Q ss_pred ecCHHHH
Q 004537 377 FGKASEA 383 (746)
Q Consensus 377 ~G~~~~~ 383 (746)
.|+++++
T Consensus 477 ~~~~~~~ 483 (501)
T PRK11288 477 ELAREQA 483 (501)
T ss_pred EEccccC
Confidence 9987653
|
|
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-38 Score=317.50 Aligned_cols=194 Identities=27% Similarity=0.447 Sum_probs=152.8
Q ss_pred EEEEeEEEEEeeccccccc--cccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCChhc
Q 004537 150 LKFTDVTYKVILKGMTSSE--EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~--~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~ 227 (746)
++++||+++|.. +. .+.+|+|+|++|++||+++|+||||||||||+++|+|.. ++.+|+|.++|
T Consensus 1 l~~~~l~~~~~~-----~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~--~~~~G~i~~~g------- 66 (204)
T cd03250 1 ISVEDASFTWDS-----GEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGEL--EKLSGSVSVPG------- 66 (204)
T ss_pred CEEeEEEEecCC-----CCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcC--CCCCCeEEEcC-------
Confidence 478999999821 11 136999999999999999999999999999999999954 35689999998
Q ss_pred cCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCc-------cccccccCccccCCCHHH
Q 004537 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-------CQDTMIGGSFVRGVSGGE 300 (746)
Q Consensus 228 ~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~vg~~~~~~LSGGe 300 (746)
+|+|++|++.+++ .|++||+.+... ...+ ...+.++.+++.+ ..++.+. .....|||||
T Consensus 67 --~i~~~~q~~~l~~-~t~~enl~~~~~------~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~lS~G~ 132 (204)
T cd03250 67 --SIAYVSQEPWIQN-GTIRENILFGKP------FDEE----RYEKVIKACALEPDLEILPDGDLTEIG-EKGINLSGGQ 132 (204)
T ss_pred --EEEEEecCchhcc-CcHHHHhccCCC------cCHH----HHHHHHHHcCcHHHHHhccCcccceec-CCCCcCCHHH
Confidence 5999999999885 699999987532 1111 1222233333221 1222222 2357899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCe
Q 004537 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQ-MLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGS 373 (746)
Q Consensus 301 rqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~-~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~ 373 (746)
|||++|||+|+.+|++++|||||+|||+.++..+.+ .++++.++|+|||+++|++.. +.. +|++++|++|+
T Consensus 133 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~-~~~-~d~i~~l~~G~ 204 (204)
T cd03250 133 KQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQL-LPH-ADQIVVLDNGR 204 (204)
T ss_pred HHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHH-Hhh-CCEEEEEeCCC
Confidence 999999999999999999999999999999999998 567666668999999999753 544 99999999985
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=338.26 Aligned_cols=215 Identities=27% Similarity=0.392 Sum_probs=191.4
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCC----
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---- 224 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~---- 224 (746)
.++++|+++.| +...+++|||++|++||+.||+|.||||||||+++|.|. +. +++|+|.+||+++.
T Consensus 4 ~l~~~~itK~f--------~~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~-~~-P~~GeI~v~G~~v~~~sP 73 (501)
T COG3845 4 ALEMRGITKRF--------PGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGL-YQ-PDSGEIRVDGKEVRIKSP 73 (501)
T ss_pred eEEEeccEEEc--------CCEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCc-cc-CCcceEEECCEEeccCCH
Confidence 58999999998 467899999999999999999999999999999999995 44 46999999999874
Q ss_pred -hhccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHH
Q 004537 225 -KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (746)
Q Consensus 225 -~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqR 303 (746)
+..+..||+|.|++.|+|++||.|||..+........++.+..+++++++.++.||+-..|..+ .+||-|||||
T Consensus 74 ~dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V-----~dLsVG~qQR 148 (501)
T COG3845 74 RDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKV-----ADLSVGEQQR 148 (501)
T ss_pred HHHHHcCCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCcccee-----ecCCcchhHH
Confidence 2356789999999999999999999999864322223567778889999999999987667655 5799999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecC
Q 004537 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (746)
Q Consensus 304 v~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (746)
|.|-++|.++|++|||||||+-|-|....++++.|++++++|+|||++||.+. |+.+.|||+.||.+|+++..-+
T Consensus 149 VEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~-Ev~~iaDrvTVLR~Gkvvgt~~ 223 (501)
T COG3845 149 VEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLK-EVMAIADRVTVLRRGKVVGTVD 223 (501)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH-HHHHhhCeeEEEeCCeEEeeec
Confidence 99999999999999999999999999999999999999999999999999975 6889999999999999876654
|
|
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-37 Score=317.12 Aligned_cols=200 Identities=26% Similarity=0.425 Sum_probs=158.4
Q ss_pred EEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh-----
Q 004537 151 KFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----- 225 (746)
Q Consensus 151 ~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~----- 225 (746)
.+.|+.|.|. +++++|+|+||++++||+++|+||||||||||+++|+|.. ++.+|+|.++|+++..
T Consensus 2 ~~~~~~~~~~-------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~--~~~~G~i~~~g~~~~~~~~~~ 72 (218)
T cd03290 2 QVTNGYFSWG-------SGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEM--QTLEGKVHWSNKNESEPSFEA 72 (218)
T ss_pred eeeeeEEecC-------CCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccC--CCCCCeEEECCcccccccccc
Confidence 4678888872 2357999999999999999999999999999999999964 3458999999987632
Q ss_pred ---hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccc-------cccccCccccC
Q 004537 226 ---SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ-------DTMIGGSFVRG 295 (746)
Q Consensus 226 ---~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-------~~~vg~~~~~~ 295 (746)
..++.++|++|++.+++ .|++||+.+... ... +...++++.++|.+.. ++.. +..+..
T Consensus 73 ~~~~~~~~i~~~~q~~~~~~-~t~~~nl~~~~~------~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~ 140 (218)
T cd03290 73 TRSRNRYSVAYAAQKPWLLN-ATVEENITFGSP------FNK----QRYKAVTDACSLQPDIDLLPFGDQTEI-GERGIN 140 (218)
T ss_pred cchhhcceEEEEcCCCcccc-ccHHHHHhhcCc------CCH----HHHHHHHHHhCcHHHHHhCcCccccCc-ccCCCc
Confidence 13467999999998884 799999987531 111 1223445555554322 2222 234678
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH--HHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCe
Q 004537 296 VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQ--MLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGS 373 (746)
Q Consensus 296 LSGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~--~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~ 373 (746)
|||||||||+|||+|+.+|++|||||||+|||+.++..+++ .++.+.+.|+|+|+++|++.. + ..||++++|++|+
T Consensus 141 LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~-~-~~~d~i~~l~~G~ 218 (218)
T cd03290 141 LSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQY-L-PHADWIIAMKDGS 218 (218)
T ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHH-H-hhCCEEEEecCCC
Confidence 99999999999999999999999999999999999999998 667666668999999999864 4 5799999999884
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >PRK13541 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-37 Score=311.00 Aligned_cols=192 Identities=21% Similarity=0.327 Sum_probs=160.0
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCChhccC
Q 004537 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKS 229 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~ 229 (746)
++++|++++| +++.+++ +|+++++||+++|+||||||||||+++|+|.. ++.+|+|.++|.++....++
T Consensus 2 l~~~~l~~~~--------~~~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~--~~~~G~i~~~g~~i~~~~~~ 70 (195)
T PRK13541 2 LSLHQLQFNI--------EQKNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIM--QPSSGNIYYKNCNINNIAKP 70 (195)
T ss_pred eEEEEeeEEE--------CCcEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCC--CCCCcEEEECCcccChhhhh
Confidence 7899999998 2344555 99999999999999999999999999999954 35689999999987543345
Q ss_pred cEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHHHH
Q 004537 230 KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNE 309 (746)
Q Consensus 230 ~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~a 309 (746)
.++|++|++.+++.+||+||+.+..... . ..+++.++++.+++.+..++. ++.||||||||++|||+
T Consensus 71 ~~~~~~~~~~~~~~~tv~~~l~~~~~~~-----~---~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~~rl~la~a 137 (195)
T PRK13541 71 YCTYIGHNLGLKLEMTVFENLKFWSEIY-----N---SAETLYAAIHYFKLHDLLDEK-----CYSLSSGMQKIVAIARL 137 (195)
T ss_pred hEEeccCCcCCCccCCHHHHHHHHHHhc-----c---cHHHHHHHHHHcCCHhhhccC-----hhhCCHHHHHHHHHHHH
Confidence 6999999987777899999998864321 0 134567888999997766643 46899999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEE
Q 004537 310 IIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLI 367 (746)
Q Consensus 310 L~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~ 367 (746)
|+.+|++++|||||+|||+.++..+.+.|++..++|+|+|+++|++.. .+.+|-|.
T Consensus 138 l~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~--i~~~~~~~ 193 (195)
T PRK13541 138 IACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESS--IKSAQILQ 193 (195)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCccc--cchhheec
Confidence 999999999999999999999999999998777779999999999763 35566553
|
|
| >cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-37 Score=306.75 Aligned_cols=167 Identities=37% Similarity=0.639 Sum_probs=147.1
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh----
Q 004537 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (746)
++++|++++|.. .+..+|+|+|+++++||+++|+||||||||||+++|+|.. ++.+|+|.++|+++..
T Consensus 1 l~~~~l~~~~~~------~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~--~~~~G~i~~~g~~~~~~~~~ 72 (171)
T cd03228 1 IEFKNVSFSYPG------RPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLY--DPTSGEILIDGVDLRDLDLE 72 (171)
T ss_pred CEEEEEEEEcCC------CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCC--CCCCCEEEECCEEhhhcCHH
Confidence 468999998821 1236999999999999999999999999999999999954 3468999999998742
Q ss_pred hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHH
Q 004537 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (746)
Q Consensus 226 ~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~ 305 (746)
..++.++|++|++.+++ .|+.||+ ||||||||++
T Consensus 73 ~~~~~i~~~~~~~~~~~-~t~~e~l---------------------------------------------LS~G~~~rl~ 106 (171)
T cd03228 73 SLRKNIAYVPQDPFLFS-GTIRENI---------------------------------------------LSGGQRQRIA 106 (171)
T ss_pred HHHhhEEEEcCCchhcc-chHHHHh---------------------------------------------hCHHHHHHHH
Confidence 34677999999998886 5999887 9999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCe
Q 004537 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGS 373 (746)
Q Consensus 306 IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~ 373 (746)
|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|+|++||++. .+.. ||++++|++|+
T Consensus 107 la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~~-~d~~~~l~~g~ 171 (171)
T cd03228 107 IARALLRDPPILILDEATSALDPETEALILEALRALAK-GKTVIVIAHRLS-TIRD-ADRIIVLDDGR 171 (171)
T ss_pred HHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcC-CCEEEEEecCHH-HHHh-CCEEEEEcCCC
Confidence 99999999999999999999999999999999999864 799999999976 4555 99999999985
|
They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-37 Score=356.70 Aligned_cols=214 Identities=22% Similarity=0.325 Sum_probs=176.8
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (746)
.|+++|++. .+|+|+|++|++||+++|+||||||||||+|+|+|.. ++.+|+|.++|.++..
T Consensus 268 ~l~~~~l~~-------------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~--~p~~G~i~~~g~~i~~~~~ 332 (510)
T PRK15439 268 VLTVEDLTG-------------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLR--PARGGRIMLNGKEINALST 332 (510)
T ss_pred eEEEeCCCC-------------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCC--CCCCcEEEECCEECCCCCH
Confidence 588888872 1599999999999999999999999999999999954 3458999999998742
Q ss_pred --hccCcEEEEecCC---cCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCC-ccccccccCccccCCCHH
Q 004537 226 --SLKSKIGFVTQDD---VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVSGG 299 (746)
Q Consensus 226 --~~~~~i~yv~Q~~---~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSGG 299 (746)
..++.|+||+|++ .+++.+|+.||+........+........+++++++++.+||+ +..++. ++.||||
T Consensus 333 ~~~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgG 407 (510)
T PRK15439 333 AQRLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQA-----ARTLSGG 407 (510)
T ss_pred HHHHhCCcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCc-----cccCCcH
Confidence 1346799999984 4788899999996431111110011222345688999999996 566654 4689999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecC
Q 004537 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (746)
Q Consensus 300 erqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (746)
|||||+|||+|+.+|++|||||||+|||+.++..+.+.|++++++|.|||++||++. ++.+.||++++|++|+++..|+
T Consensus 408 ~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~-~i~~~~d~i~~l~~G~i~~~~~ 486 (510)
T PRK15439 408 NQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLE-EIEQMADRVLVMHQGEISGALT 486 (510)
T ss_pred HHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEEc
Confidence 999999999999999999999999999999999999999999888999999999975 5778999999999999999987
Q ss_pred HHHH
Q 004537 380 ASEA 383 (746)
Q Consensus 380 ~~~~ 383 (746)
++++
T Consensus 487 ~~~~ 490 (510)
T PRK15439 487 GAAI 490 (510)
T ss_pred cccC
Confidence 7653
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-38 Score=405.11 Aligned_cols=341 Identities=18% Similarity=0.200 Sum_probs=224.3
Q ss_pred HHHHHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeeccccccceecchhchhhhh
Q 004537 12 RTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSGAAL 91 (746)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 91 (746)
++..+...+.++...|.+.+.+++|.++.+....++..+...+-....++.+............ ..+.+.-++.|+.+
T Consensus 469 ~~~~~~~d~r~~~~~E~L~gi~~IK~~~~E~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~fg~~~ 546 (1622)
T PLN03130 469 KEGLQRTDKRIGLMNEVLAAMDTVKCYAWENSFQSKVQTVRDDELSWFRKAQLLSAFNSFILNS--IPVLVTVVSFGVFT 546 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 3344555666778888999999999999988766666543222111111100000000000000 00011223356666
Q ss_pred hhhcccccchhhhhcc----cccChhhhccCCC------CCCCCCcccccccCCCCCCCCCCCCCCceEEEEeEEEEEee
Q 004537 92 SRASSASLGLSFSFTG----FTMPPDEIADSKP------FSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFTDVTYKVIL 161 (746)
Q Consensus 92 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~nvs~~~~~ 161 (746)
...+.++.|..+++.. +..|...+..... .+..++.+-+...+...............++++|++|+|+.
T Consensus 547 ~~~g~Lt~g~vf~~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~~L~~~e~~~~~~~~~~~~~~~I~~~nvsf~y~~ 626 (1622)
T PLN03130 547 LLGGDLTPARAFTSLSLFAVLRFPLFMLPNLITQAVNANVSLKRLEELLLAEERVLLPNPPLEPGLPAISIKNGYFSWDS 626 (1622)
T ss_pred HhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccCCcccCCCCceEEEeeEEEccC
Confidence 6666677776655432 2223222211000 01111111111111100000000011235999999999942
Q ss_pred ccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCc-cEEEECCEeCChhccCcEEEEecCCcC
Q 004537 162 KGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVG-GSITYNDHPYSKSLKSKIGFVTQDDVL 240 (746)
Q Consensus 162 ~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~-G~I~~~G~~~~~~~~~~i~yv~Q~~~l 240 (746)
..++++|+|+|++|++||+++|+||||||||||+++|.|.. + +.+ |+|.+ +++|+||+|++.+
T Consensus 627 -----~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~-~-~~~GG~I~l---------~~~Iayv~Q~p~L 690 (1622)
T PLN03130 627 -----KAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGEL-P-PRSDASVVI---------RGTVAYVPQVSWI 690 (1622)
T ss_pred -----CCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhh-c-cCCCceEEE---------cCeEEEEcCcccc
Confidence 12467999999999999999999999999999999999954 3 457 89975 5579999999999
Q ss_pred CCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHc-------CCCccccccccCccccCCCHHHHHHHHHHHHHhhC
Q 004537 241 FPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL-------GLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIIN 313 (746)
Q Consensus 241 ~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l-------gL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~ 313 (746)
|+ .||+|||.|+.. .++ ++.+++++.. .|+++.+|.+|++. ..|||||||||+||||++++
T Consensus 691 fn-gTIreNI~fg~~------~d~----e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G-~~LSGGQKQRIaLARAly~~ 758 (1622)
T PLN03130 691 FN-ATVRDNILFGSP------FDP----ERYERAIDVTALQHDLDLLPGGDLTEIGERG-VNISGGQKQRVSMARAVYSN 758 (1622)
T ss_pred CC-CCHHHHHhCCCc------ccH----HHHHHHHHHhCcHHHHHhCCCcccccccCCC-CCCCHHHHHHHHHHHHHhCC
Confidence 97 599999999732 122 2233333333 34677899998764 46999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHH-HHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHHH
Q 004537 314 PSLLFLDEPTSGLDSTTALRIVQ-MLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (746)
Q Consensus 314 p~illLDEPTsgLD~~~~~~i~~-~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 385 (746)
|+|+|||||||+||++++.++++ .++.+. +|+|+|++||+++ ....||+|++|++|++++.|+++++++
T Consensus 759 ~~IlLLDEptSALD~~~~~~I~~~~l~~~l-~~kTvIlVTH~l~--~l~~aD~Ii~L~~G~i~e~Gt~~eL~~ 828 (1622)
T PLN03130 759 SDVYIFDDPLSALDAHVGRQVFDKCIKDEL-RGKTRVLVTNQLH--FLSQVDRIILVHEGMIKEEGTYEELSN 828 (1622)
T ss_pred CCEEEECCCccccCHHHHHHHHHHHhhHHh-cCCEEEEEECCHh--HHHhCCEEEEEeCCEEEEeCCHHHHHh
Confidence 99999999999999999998865 566554 5899999999985 467899999999999999999999864
|
|
| >TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-37 Score=335.15 Aligned_cols=187 Identities=31% Similarity=0.526 Sum_probs=163.1
Q ss_pred EECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh--hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHH
Q 004537 188 LMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQ 265 (746)
Q Consensus 188 IvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~ 265 (746)
|+||||||||||+|+|+|.. ++.+|+|.++|+++.. ..++.++|++|++.+|+++||+||+.|+...+ ..+++
T Consensus 1 l~G~nGsGKSTLl~~iaGl~--~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~---~~~~~ 75 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFE--QPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMR---KVPRA 75 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCC--CCCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhc---CCCHH
Confidence 68999999999999999954 3568999999998743 24578999999999999999999999986432 23344
Q ss_pred HHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-
Q 004537 266 QKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA- 344 (746)
Q Consensus 266 ~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~- 344 (746)
+.+++++++++.++|.+..++. +++|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|+++.++
T Consensus 76 ~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~ 150 (325)
T TIGR01187 76 EIKPRVLEALRLVQLEEFADRK-----PHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQL 150 (325)
T ss_pred HHHHHHHHHHHHcCCcchhcCC-----hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhc
Confidence 5566789999999998776654 4689999999999999999999999999999999999999999999999765
Q ss_pred CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHHH
Q 004537 345 GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (746)
Q Consensus 345 g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 385 (746)
|+|+|++||++. ++.++||+|++|++|++++.|+++++..
T Consensus 151 g~tiiivTHd~~-e~~~~~d~i~vl~~G~i~~~g~~~~~~~ 190 (325)
T TIGR01187 151 GITFVFVTHDQE-EAMTMSDRIAIMRKGKIAQIGTPEEIYE 190 (325)
T ss_pred CCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 899999999975 5788999999999999999999998753
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). |
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-37 Score=301.36 Aligned_cols=157 Identities=31% Similarity=0.489 Sum_probs=141.4
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh----
Q 004537 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (746)
|+++|++++| +++++|+|+|+++++||+++|+||||||||||+++|+|.. ++.+|+|.++|+++..
T Consensus 1 l~~~~l~~~~--------~~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~--~~~~G~v~~~g~~~~~~~~~ 70 (163)
T cd03216 1 LELRGITKRF--------GGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLY--KPDSGEILVDGKEVSFASPR 70 (163)
T ss_pred CEEEEEEEEE--------CCeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCC--CCCCeEEEECCEECCcCCHH
Confidence 4789999998 2347999999999999999999999999999999999964 3568999999998742
Q ss_pred -hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHH
Q 004537 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (746)
Q Consensus 226 -~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv 304 (746)
..++.++|++| ||||||||+
T Consensus 71 ~~~~~~i~~~~q-----------------------------------------------------------LS~G~~qrl 91 (163)
T cd03216 71 DARRAGIAMVYQ-----------------------------------------------------------LSVGERQMV 91 (163)
T ss_pred HHHhcCeEEEEe-----------------------------------------------------------cCHHHHHHH
Confidence 23567899988 999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEE
Q 004537 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (746)
Q Consensus 305 ~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~ 376 (746)
+|||+|+.+|++++|||||+|||+.++..+.+.|++++++|+|+|+++|++. ++.+.||++++|++|++++
T Consensus 92 ~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 92 EIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLD-EVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred HHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEe
Confidence 9999999999999999999999999999999999999877999999999965 4667899999999999875
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-37 Score=324.40 Aligned_cols=204 Identities=29% Similarity=0.442 Sum_probs=163.1
Q ss_pred CCceEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh
Q 004537 146 LPIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK 225 (746)
Q Consensus 146 ~~~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~ 225 (746)
.+..|+++|+++. .+.+|+|+|++|++||+++|+||||||||||+++|+|.. ++.+|+|.++|
T Consensus 36 ~~~~l~i~nls~~----------~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~--~p~~G~I~i~g----- 98 (282)
T cd03291 36 DDNNLFFSNLCLV----------GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGEL--EPSEGKIKHSG----- 98 (282)
T ss_pred CCCeEEEEEEEEe----------cccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC--CCCCcEEEECC-----
Confidence 3456999999974 246999999999999999999999999999999999964 35689999998
Q ss_pred hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCc-------cccccccCccccCCCH
Q 004537 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-------CQDTMIGGSFVRGVSG 298 (746)
Q Consensus 226 ~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~vg~~~~~~LSG 298 (746)
.++|++|++.+++. ||+||+.+.... .. .++.+.++.+++.+ ..++.++ ..+..|||
T Consensus 99 ----~i~yv~q~~~l~~~-tv~enl~~~~~~------~~----~~~~~~l~~~~l~~~l~~~~~~~~~~~~-~~~~~LSg 162 (282)
T cd03291 99 ----RISFSSQFSWIMPG-TIKENIIFGVSY------DE----YRYKSVVKACQLEEDITKFPEKDNTVLG-EGGITLSG 162 (282)
T ss_pred ----EEEEEeCccccccc-CHHHHhhccccc------CH----HHHHHHHHHhCCHHHHHhccccccceec-CCCCcCCH
Confidence 39999999998875 999999875311 11 11222333333322 2233332 23468999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH-HHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEe
Q 004537 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQML-QDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (746)
Q Consensus 299 GerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L-~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~ 377 (746)
|||||++|||+|+.+|++|||||||+|||+.++..+.+.+ +++. +++|||+++|++.. + ..||++++|++|++++.
T Consensus 163 Gq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~-~~~tIiiisH~~~~-~-~~~d~i~~l~~G~i~~~ 239 (282)
T cd03291 163 GQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLM-ANKTRILVTSKMEH-L-KKADKILILHEGSSYFY 239 (282)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhh-CCCEEEEEeCChHH-H-HhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999865 5554 48999999999764 4 67999999999999999
Q ss_pred cCHHHHHH
Q 004537 378 GKASEAMA 385 (746)
Q Consensus 378 G~~~~~~~ 385 (746)
|+++++..
T Consensus 240 g~~~~~~~ 247 (282)
T cd03291 240 GTFSELQS 247 (282)
T ss_pred CCHHHHHh
Confidence 99988753
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-39 Score=303.44 Aligned_cols=194 Identities=28% Similarity=0.491 Sum_probs=169.1
Q ss_pred ccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCC----hhccCcEEEEecCCcCCCC
Q 004537 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS----KSLKSKIGFVTQDDVLFPH 243 (746)
Q Consensus 168 ~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~----~~~~~~i~yv~Q~~~l~~~ 243 (746)
.+.++|+|+||++.+||..+|.||||||||||+|+++. +. ++++|.+++.|++++ +.+|.+|+||.|.+.||+.
T Consensus 14 ~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~-Li-sp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~ 91 (223)
T COG4619 14 GDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVAS-LI-SPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGD 91 (223)
T ss_pred CCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHh-cc-CCCCceEEEcCccccccChHHHHHHHHHHHcCcccccc
Confidence 56789999999999999999999999999999999996 43 456899999999986 3578999999999999986
Q ss_pred CCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 004537 244 LTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPT 323 (746)
Q Consensus 244 lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~illLDEPT 323 (746)
||++|+.|..+.+..+ .+.+++.+.++++++++..- ++.+..||||||||++|+|.|..-|+||+|||||
T Consensus 92 -tVeDNlifP~~~r~rr-----~dr~aa~~llar~~l~~~~L----~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~T 161 (223)
T COG4619 92 -TVEDNLIFPWQIRNRR-----PDRAAALDLLARFALPDSIL----TKNITELSGGEKQRIALIRNLQFMPKILLLDEIT 161 (223)
T ss_pred -chhhccccchHHhccC-----CChHHHHHHHHHcCCchhhh----cchhhhccchHHHHHHHHHHhhcCCceEEecCch
Confidence 9999999987665321 13456788999999986432 2445689999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHH-HCCCEEEEEecCCChHHHhccCEEEEEeCCeE
Q 004537 324 SGLDSTTALRIVQMLQDIA-EAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (746)
Q Consensus 324 sgLD~~~~~~i~~~L~~l~-~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~i 374 (746)
|+||+.+++.|-++|.++. .+.+.++.+||++.. ..+.+|+++-+..|++
T Consensus 162 sALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dq-a~rha~k~itl~~G~~ 212 (223)
T COG4619 162 SALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQ-AIRHADKVITLQPGHA 212 (223)
T ss_pred hhcChhhHHHHHHHHHHHhhhhceEEEEEecChHH-HhhhhheEEEeccCcc
Confidence 9999999999999999986 568999999999764 5688999999999876
|
|
| >PRK10535 macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=358.97 Aligned_cols=220 Identities=27% Similarity=0.472 Sum_probs=189.3
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (746)
.|+++|+++.|... .+.+.+|+|+||++++||+++|+||||||||||+|+|+|.. ++.+|+|.+||+++..
T Consensus 4 ~l~~~nl~~~y~~~----~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~--~~~~G~i~~~g~~i~~~~~ 77 (648)
T PRK10535 4 LLELKDIRRSYPSG----EEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLD--KPTSGTYRVAGQDVATLDA 77 (648)
T ss_pred EEEEeeEEEEeCCC----CCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC--CCCCeEEEECCEEcCcCCH
Confidence 59999999998311 12357999999999999999999999999999999999964 3568999999998752
Q ss_pred -h----ccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHH
Q 004537 226 -S----LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGE 300 (746)
Q Consensus 226 -~----~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGe 300 (746)
+ .++.++|++|++.+++.+|+.||+.+..... ..+.++.++++.++++.+||.+..|+. ++.|||||
T Consensus 78 ~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~lgl~~~~~~~-----~~~LS~Gq 149 (648)
T PRK10535 78 DALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYA---GLERKQRLLRAQELLQRLGLEDRVEYQ-----PSQLSGGQ 149 (648)
T ss_pred HHHHHHHhccEEEEeCCcccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhhhcCC-----cccCCHHH
Confidence 1 1467999999999999999999999865322 223455667789999999998776654 45899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCH
Q 004537 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380 (746)
Q Consensus 301 rqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~ 380 (746)
+||++|||+|+.+|++|+|||||+|||+.+++.+.+.|++++++|+|+|+++|++. ..+.||++++|++|++++.|+.
T Consensus 150 ~qrv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~--~~~~~d~i~~l~~G~i~~~g~~ 227 (648)
T PRK10535 150 QQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQ--VAAQAERVIEIRDGEIVRNPPA 227 (648)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHH--HHHhCCEEEEEECCEEEeecCc
Confidence 99999999999999999999999999999999999999999877999999999975 3467999999999999999999
Q ss_pred HHHH
Q 004537 381 SEAM 384 (746)
Q Consensus 381 ~~~~ 384 (746)
++..
T Consensus 228 ~~~~ 231 (648)
T PRK10535 228 QEKV 231 (648)
T ss_pred cccc
Confidence 8765
|
|
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-37 Score=300.73 Aligned_cols=163 Identities=30% Similarity=0.546 Sum_probs=143.2
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCChhccC
Q 004537 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKS 229 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~ 229 (746)
++++|++++|. .++++|+|+|+++++||+++|+||||||||||+++|+|.. ++.+|+|.++|. +
T Consensus 1 i~~~~~~~~~~-------~~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~--~~~~G~i~~~~~-------~ 64 (166)
T cd03223 1 IELENLSLATP-------DGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLW--PWGSGRIGMPEG-------E 64 (166)
T ss_pred CEEEEEEEEcC-------CCCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCC--CCCCceEEECCC-------c
Confidence 46899999882 1256999999999999999999999999999999999954 346899999873 5
Q ss_pred cEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHHHH
Q 004537 230 KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNE 309 (746)
Q Consensus 230 ~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~a 309 (746)
+++|++|++.++ ..||+||+.+. .++.||||||||++|||+
T Consensus 65 ~i~~~~q~~~~~-~~tv~~nl~~~--------------------------------------~~~~LS~G~~~rv~lara 105 (166)
T cd03223 65 DLLFLPQRPYLP-LGTLREQLIYP--------------------------------------WDDVLSGGEQQRLAFARL 105 (166)
T ss_pred eEEEECCCCccc-cccHHHHhhcc--------------------------------------CCCCCCHHHHHHHHHHHH
Confidence 799999998876 57999998752 124799999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCC
Q 004537 310 IIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKG 372 (746)
Q Consensus 310 L~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G 372 (746)
|+.+|++++|||||+|||+.++..+.+.|+++ ++|+|++||++. ....||++++|++|
T Consensus 106 l~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsh~~~--~~~~~d~i~~l~~~ 163 (166)
T cd03223 106 LLHKPKFVFLDEATSALDEESEDRLYQLLKEL---GITVISVGHRPS--LWKFHDRVLDLDGE 163 (166)
T ss_pred HHcCCCEEEEECCccccCHHHHHHHHHHHHHh---CCEEEEEeCChh--HHhhCCEEEEEcCC
Confidence 99999999999999999999999999999986 689999999975 34789999999875
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-37 Score=353.40 Aligned_cols=211 Identities=27% Similarity=0.448 Sum_probs=174.0
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCChhccC
Q 004537 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKS 229 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~ 229 (746)
|+++|++++| +++++|+|+||+|++||+++|+||||||||||||+|+|.+ ++.+|+|.++|. .
T Consensus 2 l~i~~ls~~~--------~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~--~p~~G~i~~~~~-------~ 64 (530)
T PRK15064 2 LSTANITMQF--------GAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDL--EPSAGNVSLDPN-------E 64 (530)
T ss_pred EEEEEEEEEe--------CCcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCC--CCCCceEEecCC-------C
Confidence 7899999998 3457999999999999999999999999999999999954 345899999873 4
Q ss_pred cEEEEecCCcCCCCCCHHHHHHHHHh-c-----------cCCCC-----------------CcHHHHHHHHHHHHHHcCC
Q 004537 230 KIGFVTQDDVLFPHLTVKETLTYAAL-L-----------RLPNT-----------------LTKQQKEKRAIDVINELGL 280 (746)
Q Consensus 230 ~i~yv~Q~~~l~~~lTV~E~l~~~~~-~-----------~~~~~-----------------~~~~~~~~~v~~~l~~lgL 280 (746)
.|+|++|++.+++.+||+||+.++.. . ..+.. ....+.++++.++++.+||
T Consensus 65 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl 144 (530)
T PRK15064 65 RLGKLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGI 144 (530)
T ss_pred EEEEEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCC
Confidence 59999999999999999999987531 0 00000 0001224568889999999
Q ss_pred CccccccccCccccCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHH
Q 004537 281 ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLF 360 (746)
Q Consensus 281 ~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~ 360 (746)
++..+. ..+..|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++ .|+|||+++|++. .+.
T Consensus 145 ~~~~~~----~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~~~tiiivsHd~~-~~~ 216 (530)
T PRK15064 145 PEEQHY----GLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE---RNSTMIIISHDRH-FLN 216 (530)
T ss_pred ChhHhc----CchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh---CCCeEEEEeCCHH-HHH
Confidence 753321 23468999999999999999999999999999999999999999999864 5899999999975 577
Q ss_pred hccCEEEEEeCCeE-EEecCHHHHHH
Q 004537 361 HKFDKLILLGKGSL-LYFGKASEAMA 385 (746)
Q Consensus 361 ~~~D~i~vL~~G~i-v~~G~~~~~~~ 385 (746)
+.||+|++|++|++ ++.|++++.++
T Consensus 217 ~~~d~i~~l~~g~i~~~~g~~~~~~~ 242 (530)
T PRK15064 217 SVCTHMADLDYGELRVYPGNYDEYMT 242 (530)
T ss_pred hhcceEEEEeCCEEEEecCCHHHHHH
Confidence 89999999999999 58999887654
|
|
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-38 Score=371.85 Aligned_cols=340 Identities=16% Similarity=0.159 Sum_probs=221.7
Q ss_pred hHhHHHHHHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeecccccc--ceecchh
Q 004537 8 TSLARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQL--KLELDEV 85 (746)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 85 (746)
.++.++.+++.++..+..+|...+.++|++|+++..+.+++.++.........+................. -..+.-+
T Consensus 264 ~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 343 (659)
T TIGR00954 264 GKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEHLNLIIKFRFSYGFLDNIVAKYTWSAVGLV 343 (659)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 46778889999999999999999999999999999999999988776655543322111111011111100 0011111
Q ss_pred chhhhhhh-----hcccccchhhh-hccc-------ccChhhhccC------------CCCCCCCCcccccccC----CC
Q 004537 86 SSGAALSR-----ASSASLGLSFS-FTGF-------TMPPDEIADS------------KPFSDDDIPEDIEAGT----RE 136 (746)
Q Consensus 86 ~~g~~~~~-----~~~~~~~~~~~-~~~~-------~~~~~~~~~~------------~~~~~~~~~~~~~~~~----~~ 136 (746)
..|..... .+.++.|.... |..+ ..|...+... +.++..+..+++.... ..
T Consensus 344 ~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i~~~~~~~~Ri~~ll~~~~~~~~~~~~~~~~ 423 (659)
T TIGR00954 344 AVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDMTRLAGFTARVDTLLQVLDDVKSGNFKRPRV 423 (659)
T ss_pred HHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccc
Confidence 22221221 13445454333 2221 1111111100 0000011000000000 00
Q ss_pred C------------CC---CCCCCCCCceEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHH
Q 004537 137 R------------PK---FQTEPTLPIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLN 201 (746)
Q Consensus 137 ~------------~~---~~~~~~~~~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~ 201 (746)
. +. ..........++++||++.|+ +++++|+|+|+++++||+++|+||||||||||++
T Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~-------~~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~ 496 (659)
T TIGR00954 424 EEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTP-------NGDVLIESLSFEVPSGNHLLICGPNGCGKSSLFR 496 (659)
T ss_pred ccccccccccccccccccccccccCCCeEEEEeeEEECC-------CCCeeeecceEEECCCCEEEEECCCCCCHHHHHH
Confidence 0 00 000011123599999999872 2347999999999999999999999999999999
Q ss_pred HHHcCCCCCCCccEEEECCEeCChhccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCC
Q 004537 202 LLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE 281 (746)
Q Consensus 202 ~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~ 281 (746)
+|+|.. ++.+|+|.+++ +++++||+|++.+++. |++||+.++...... ..+...++++.++++.+++.
T Consensus 497 lL~Gl~--~~~~G~i~~~~-------~~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~--~~~~~~~~~i~~~l~~~~l~ 564 (659)
T TIGR00954 497 ILGELW--PVYGGRLTKPA-------KGKLFYVPQRPYMTLG-TLRDQIIYPDSSEDM--KRRGLSDKDLEQILDNVQLT 564 (659)
T ss_pred HHhCCC--CCCCCeEeecC-------CCcEEEECCCCCCCCc-CHHHHHhcCCChhhh--hccCCCHHHHHHHHHHcCCH
Confidence 999953 34589998864 5679999999999986 999999986421100 00011234567888888887
Q ss_pred cccccccc----CccccCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCh
Q 004537 282 RCQDTMIG----GSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSS 357 (746)
Q Consensus 282 ~~~~~~vg----~~~~~~LSGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~ 357 (746)
+..+...| ......||||||||++|||+|+++|+++||||||+|||+.++..+.+.+++ .|+|+|+++|+++.
T Consensus 565 ~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~---~~~tvI~isH~~~~ 641 (659)
T TIGR00954 565 HILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCRE---FGITLFSVSHRKSL 641 (659)
T ss_pred HHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHH---cCCEEEEEeCchHH
Confidence 65443221 113467999999999999999999999999999999999999999998876 38999999999763
Q ss_pred HHHhccCEEEEEeC
Q 004537 358 RLFHKFDKLILLGK 371 (746)
Q Consensus 358 ~i~~~~D~i~vL~~ 371 (746)
.+.||++++|+.
T Consensus 642 --~~~~d~il~l~~ 653 (659)
T TIGR00954 642 --WKYHEYLLYMDG 653 (659)
T ss_pred --HHhCCEEEEEeC
Confidence 578999999974
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=352.27 Aligned_cols=211 Identities=27% Similarity=0.384 Sum_probs=173.5
Q ss_pred ceEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCChhc
Q 004537 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (746)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~ 227 (746)
..|+++||+++|. +++++|+|+||+|++|++++|+|||||||||||++|+|.+. +.+|+|.+++
T Consensus 5 ~~l~i~~l~~~y~-------~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~--p~~G~i~~~~------- 68 (556)
T PRK11819 5 YIYTMNRVSKVVP-------PKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDK--EFEGEARPAP------- 68 (556)
T ss_pred EEEEEeeEEEEeC-------CCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEecC-------
Confidence 3699999999981 14679999999999999999999999999999999999643 4689999975
Q ss_pred cCcEEEEecCCcCCCCCCHHHHHHHHHhc---------------cCCC-CCc-----------------HHHHHHHHHHH
Q 004537 228 KSKIGFVTQDDVLFPHLTVKETLTYAALL---------------RLPN-TLT-----------------KQQKEKRAIDV 274 (746)
Q Consensus 228 ~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~---------------~~~~-~~~-----------------~~~~~~~v~~~ 274 (746)
...+|||+|++.+++.+||.||+.++... ..+. ... ..+..++++++
T Consensus 69 ~~~i~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (556)
T PRK11819 69 GIKVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIA 148 (556)
T ss_pred CCEEEEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHH
Confidence 24699999999999999999999875310 0000 000 00123567888
Q ss_pred HHHcCCCccccccccCccccCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecC
Q 004537 275 INELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQ 354 (746)
Q Consensus 275 l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~ 354 (746)
++.+||++ .+. .+.+|||||||||+|||+|+.+|++|||||||++||+.+...+.+.|+++ +.|||++||+
T Consensus 149 l~~~gl~~-~~~-----~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~---~~tviiisHd 219 (556)
T PRK11819 149 MDALRCPP-WDA-----KVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDY---PGTVVAVTHD 219 (556)
T ss_pred HHhCCCCc-ccC-----chhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhC---CCeEEEEeCC
Confidence 99999953 444 34689999999999999999999999999999999999999999999986 2499999999
Q ss_pred CChHHHhccCEEEEEeCCeEE-EecCHHHHH
Q 004537 355 PSSRLFHKFDKLILLGKGSLL-YFGKASEAM 384 (746)
Q Consensus 355 ~~~~i~~~~D~i~vL~~G~iv-~~G~~~~~~ 384 (746)
+. .+.+.||+|++|++|+++ +.|+.++..
T Consensus 220 ~~-~~~~~~d~i~~l~~g~i~~~~g~~~~~~ 249 (556)
T PRK11819 220 RY-FLDNVAGWILELDRGRGIPWEGNYSSWL 249 (556)
T ss_pred HH-HHHhhcCeEEEEeCCEEEEecCCHHHHH
Confidence 75 577889999999999986 889887654
|
|
| >COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-37 Score=308.76 Aligned_cols=216 Identities=28% Similarity=0.484 Sum_probs=183.0
Q ss_pred ceEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCC---
Q 004537 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS--- 224 (746)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~--- 224 (746)
..|+++||+.+| ++|+||+|+|.+|+|||-.+|+|||||||||||++++|. .++.+|.+.+.|++..
T Consensus 30 ~li~l~~v~v~r--------~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~--~~pssg~~~~~G~~~G~~~ 99 (257)
T COG1119 30 PLIELKNVSVRR--------NGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGE--HPPSSGDVTLLGRRFGKGE 99 (257)
T ss_pred ceEEecceEEEE--------CCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcc--cCCCCCceeeeeeeccCCc
Confidence 469999999998 578999999999999999999999999999999999994 3455899999998863
Q ss_pred --hhccCcEEEEecC--CcCCCCCCHHHHHHHHHh--ccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCH
Q 004537 225 --KSLKSKIGFVTQD--DVLFPHLTVKETLTYAAL--LRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSG 298 (746)
Q Consensus 225 --~~~~~~i~yv~Q~--~~l~~~lTV~E~l~~~~~--~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSG 298 (746)
.++|++||+|.-. ..+.+..+|+|-+.-+.. .-.......++..+++..+++.+|+.+.+|... ..||-
T Consensus 100 ~~~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~-----~~LS~ 174 (257)
T COG1119 100 TIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPF-----GSLSQ 174 (257)
T ss_pred chHHHHHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCch-----hhcCH
Confidence 3678999999753 345556788887764322 111111223556778899999999999888654 58999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC--CCEEEEEecCCChHHHhccCEEEEEeCCeEEE
Q 004537 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA--GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (746)
Q Consensus 299 GerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~--g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~ 376 (746)
||||||-|||||+++|++||||||++|||...+..+.+.|.+++.. +.++|+|||+.. ++-..+++++++++|++++
T Consensus 175 Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~e-Ei~~~~th~lll~~g~v~~ 253 (257)
T COG1119 175 GEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAE-EIPPCFTHRLLLKEGEVVA 253 (257)
T ss_pred hHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchh-hcccccceEEEeeCCceee
Confidence 9999999999999999999999999999999999999999999865 789999999965 6889999999999999999
Q ss_pred ecC
Q 004537 377 FGK 379 (746)
Q Consensus 377 ~G~ 379 (746)
.|.
T Consensus 254 ~g~ 256 (257)
T COG1119 254 QGK 256 (257)
T ss_pred ccc
Confidence 884
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-36 Score=346.98 Aligned_cols=215 Identities=20% Similarity=0.370 Sum_probs=175.0
Q ss_pred ceEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh--
Q 004537 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (746)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (746)
..|+++|+++.+ +.+|+|+|+++++||+++|+||||||||||+++|+|.. ++.+|+|.++|+++..
T Consensus 249 ~~i~~~~l~~~~----------~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~--~p~~G~i~~~g~~i~~~~ 316 (491)
T PRK10982 249 VILEVRNLTSLR----------QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIR--EKSAGTITLHGKKINNHN 316 (491)
T ss_pred cEEEEeCccccc----------CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCC--cCCccEEEECCEECCCCC
Confidence 369999998752 35999999999999999999999999999999999954 3468999999988742
Q ss_pred ---hccCcEEEEecCC---cCCCCCCHHHHHHHHHh--c-cCCCCCcHHHHHHHHHHHHHHcCCC-ccccccccCccccC
Q 004537 226 ---SLKSKIGFVTQDD---VLFPHLTVKETLTYAAL--L-RLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRG 295 (746)
Q Consensus 226 ---~~~~~i~yv~Q~~---~l~~~lTV~E~l~~~~~--~-~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~ 295 (746)
..++.++|++|++ .+|+.+|+.+|..+... . ...........++.+.++++.+++. +..++ .+.+
T Consensus 317 ~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~~ 391 (491)
T PRK10982 317 ANEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRT-----QIGS 391 (491)
T ss_pred HHHHHHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCccc-----cccc
Confidence 2356699999985 46888888877433210 0 0000012233456678899999995 34454 4568
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEE
Q 004537 296 VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLL 375 (746)
Q Consensus 296 LSGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv 375 (746)
|||||||||+|||+|+.+|+||||||||+|||+.++..+++.|+++.++|+|||++||++. ++.++||++++|++|+++
T Consensus 392 LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~-~~~~~~d~v~~l~~g~i~ 470 (491)
T PRK10982 392 LSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMP-ELLGITDRILVMSNGLVA 470 (491)
T ss_pred CCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChH-HHHhhCCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999999999999888999999999975 577899999999999999
Q ss_pred EecCH
Q 004537 376 YFGKA 380 (746)
Q Consensus 376 ~~G~~ 380 (746)
..++.
T Consensus 471 ~~~~~ 475 (491)
T PRK10982 471 GIVDT 475 (491)
T ss_pred EEEcc
Confidence 87754
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=347.37 Aligned_cols=215 Identities=21% Similarity=0.374 Sum_probs=172.1
Q ss_pred ceEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh--
Q 004537 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (746)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (746)
..|+++|+++.| +++.+|+|+||++++||+++|+||||||||||+|+|+|.. .+..+|+|.++|+++..
T Consensus 259 ~~l~~~~l~~~~--------~~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~-~~~~~G~i~~~g~~~~~~~ 329 (490)
T PRK10938 259 PRIVLNNGVVSY--------NDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDH-PQGYSNDLTLFGRRRGSGE 329 (490)
T ss_pred ceEEEeceEEEE--------CCeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCC-CcccCCeEEEecccCCCCC
Confidence 369999999998 2356999999999999999999999999999999999943 22258999999986531
Q ss_pred ---hccCcEEEEecCCcCCC--CCCHHHHHHHHHhc--cCCCCCcHHHHHHHHHHHHHHcCCCc-cccccccCccccCCC
Q 004537 226 ---SLKSKIGFVTQDDVLFP--HLTVKETLTYAALL--RLPNTLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVRGVS 297 (746)
Q Consensus 226 ---~~~~~i~yv~Q~~~l~~--~lTV~E~l~~~~~~--~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LS 297 (746)
..+++++|++|++.++. ..|+++++.++... ....... ...+++++++++.+||.+ ..++. +..||
T Consensus 330 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LS 403 (490)
T PRK10938 330 TIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVS-DRQQKLAQQWLDILGIDKRTADAP-----FHSLS 403 (490)
T ss_pred CHHHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCC-HHHHHHHHHHHHHcCCchhhccCc-----hhhCC
Confidence 23567999999976543 24777776544211 0101112 223457889999999986 56654 46899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCC-EEEEEecCCChHHHh-ccCEEEEEeCCeEE
Q 004537 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGK-TVVTTIHQPSSRLFH-KFDKLILLGKGSLL 375 (746)
Q Consensus 298 GGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~-Tvi~~~H~~~~~i~~-~~D~i~vL~~G~iv 375 (746)
|||||||+|||+|+.+|++|||||||+|||+.++..+.+.|++++++|. |||++||++. ++.+ .||++++|++|+++
T Consensus 404 gGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~-~~~~~~~d~v~~l~~G~i~ 482 (490)
T PRK10938 404 WGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAE-DAPACITHRLEFVPDGDIY 482 (490)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchh-hhhhhhheeEEEecCCceE
Confidence 9999999999999999999999999999999999999999999987764 6999999975 4555 58999999999987
Q ss_pred Eec
Q 004537 376 YFG 378 (746)
Q Consensus 376 ~~G 378 (746)
+.-
T Consensus 483 ~~~ 485 (490)
T PRK10938 483 RYV 485 (490)
T ss_pred Eee
Confidence 754
|
|
| >PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-36 Score=307.18 Aligned_cols=196 Identities=20% Similarity=0.217 Sum_probs=159.9
Q ss_pred cceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEE-ECCEeCChhccCcEEEEecCCcCCCCCCHHHH
Q 004537 171 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSIT-YNDHPYSKSLKSKIGFVTQDDVLFPHLTVKET 249 (746)
Q Consensus 171 ~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~-~~G~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~ 249 (746)
.+|+||||+|++||+++|+||||||||||+|+|+|.. ++.+|+|. ++|..+ .+.|++.+++.+|++||
T Consensus 1 ~vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~--~~~sG~i~~~~~~~~---------~~~~~~~l~~~ltv~en 69 (213)
T PRK15177 1 VVLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLD--APDEGDFIGLRGDAL---------PLGANSFILPGLTGEEN 69 (213)
T ss_pred CeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCc--cCCCCCEEEecCcee---------ccccccccCCcCcHHHH
Confidence 3799999999999999999999999999999999954 35689997 777543 13356678899999999
Q ss_pred HHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 004537 250 LTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDST 329 (746)
Q Consensus 250 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~illLDEPTsgLD~~ 329 (746)
+.+...... ...++.. +.+.+.++|++..++.+ +.||||||||++|||+|+.+|+++||||||++||+.
T Consensus 70 l~~~~~~~~---~~~~~~~---~~~~~~~~l~~~~~~~~-----~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~ 138 (213)
T PRK15177 70 ARMMASLYG---LDGDEFS---HFCYQLTQLEQCYTDRV-----SEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNA 138 (213)
T ss_pred HHHHHHHcC---CCHHHHH---HHHHHHhChhHHhhchH-----hhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHH
Confidence 998765321 2222222 23345567776666544 589999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHHHHHHhc
Q 004537 330 TALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSI 390 (746)
Q Consensus 330 ~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~~f~~~ 390 (746)
++..+.+.|.+..+ ++|+|+++|++. .+.+.||++++|++|++++.|+.+++.++++..
T Consensus 139 ~~~~~~~~l~~~~~-~~~ii~vsH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~ 197 (213)
T PRK15177 139 TQLRMQAALACQLQ-QKGLIVLTHNPR-LIKEHCHAFGVLLHGKITMCEDLAQATALFEQY 197 (213)
T ss_pred HHHHHHHHHHHHhh-CCcEEEEECCHH-HHHHhcCeeEEEECCeEEEeCCHHHHHHHHHHH
Confidence 99999998876544 578999999976 466789999999999999999999998887643
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-36 Score=318.07 Aligned_cols=227 Identities=26% Similarity=0.454 Sum_probs=194.2
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCC---CccEEEECCEeCC-
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPT---VGGSITYNDHPYS- 224 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~---~~G~I~~~G~~~~- 224 (746)
.|+++|++..+... .+...++++|||+|++||.+||+|.||||||-..+.+.|.+..+. .+|+|.++|+++-
T Consensus 6 lL~v~nLsV~f~~~----~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~ 81 (534)
T COG4172 6 LLSIRNLSVAFHQE----GGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLA 81 (534)
T ss_pred ceeeeccEEEEecC----CcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhc
Confidence 58999999998543 356789999999999999999999999999999999998775532 4799999999873
Q ss_pred --h-hc---c-CcEEEEecCCc--CCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccC
Q 004537 225 --K-SL---K-SKIGFVTQDDV--LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRG 295 (746)
Q Consensus 225 --~-~~---~-~~i~yv~Q~~~--l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~ 295 (746)
+ .+ | .+|+++||+|. |.|-.|+.+-|.-..++ ...+++++.++++.++++.+|+++-.... +.++++
T Consensus 82 ~se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~--Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl--~~yPHe 157 (534)
T COG4172 82 ASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRL--HRGLSRAAARARALELLELVGIPEPEKRL--DAYPHE 157 (534)
T ss_pred CCHHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHH--HhcccHHHHHHHHHHHHHHcCCCchhhhh--hhCCcc
Confidence 1 22 2 47999999984 67777887777655443 34577888899999999999998755432 468999
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeE
Q 004537 296 VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (746)
Q Consensus 296 LSGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~i 374 (746)
|||||||||.||+||+.+|++||.||||++||...+.+|+++|++|.++ |..+++||||+. -+.+++|||+||.+|++
T Consensus 158 LSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~-iVr~~ADrV~VM~~G~i 236 (534)
T COG4172 158 LSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLG-IVRKFADRVYVMQHGEI 236 (534)
T ss_pred cCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHH-HHHHhhhhEEEEeccEE
Confidence 9999999999999999999999999999999999999999999999765 999999999986 47788999999999999
Q ss_pred EEecCHHHHH
Q 004537 375 LYFGKASEAM 384 (746)
Q Consensus 375 v~~G~~~~~~ 384 (746)
++.|+.+++.
T Consensus 237 vE~~~t~~lF 246 (534)
T COG4172 237 VETGTTETLF 246 (534)
T ss_pred eecCcHHHHh
Confidence 9999988874
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-36 Score=346.18 Aligned_cols=203 Identities=23% Similarity=0.377 Sum_probs=171.7
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCChhcc
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~ 228 (746)
.|+++||+++| +++.+|+|+||+|++||+++|+||||||||||+|+|+|.. ++.+|+|.++|.
T Consensus 319 ~l~~~~l~~~~--------~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~--~p~~G~i~~~~~------- 381 (530)
T PRK15064 319 ALEVENLTKGF--------DNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGEL--EPDSGTVKWSEN------- 381 (530)
T ss_pred eEEEEeeEEee--------CCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCC--CCCCeEEEECCc-------
Confidence 69999999998 3456999999999999999999999999999999999954 345899999873
Q ss_pred CcEEEEecCCc--CCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCC-ccccccccCccccCCCHHHHHHHH
Q 004537 229 SKIGFVTQDDV--LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVSGGERKRVC 305 (746)
Q Consensus 229 ~~i~yv~Q~~~--l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSGGerqRv~ 305 (746)
+.+||++|++. +++.+||+||+.+.. .. ...+++++++++.+|+. +..+.. +..|||||||||+
T Consensus 382 ~~i~~~~q~~~~~~~~~~t~~~~~~~~~---~~-----~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgGq~qrv~ 448 (530)
T PRK15064 382 ANIGYYAQDHAYDFENDLTLFDWMSQWR---QE-----GDDEQAVRGTLGRLLFSQDDIKKS-----VKVLSGGEKGRML 448 (530)
T ss_pred eEEEEEcccccccCCCCCcHHHHHHHhc---cC-----CccHHHHHHHHHHcCCChhHhcCc-----ccccCHHHHHHHH
Confidence 46999999864 566789999986421 11 01235678899999994 455543 4689999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEE-EecCHHHHH
Q 004537 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLL-YFGKASEAM 384 (746)
Q Consensus 306 IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv-~~G~~~~~~ 384 (746)
|||+|+.+|++|||||||+|||+.++..+.+.|+++ +.|||++||++. .+.+.||++++|++|+++ +.|++++++
T Consensus 449 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~-~~~~~~d~i~~l~~g~i~~~~g~~~~~~ 524 (530)
T PRK15064 449 FGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY---EGTLIFVSHDRE-FVSSLATRIIEITPDGVVDFSGTYEEYL 524 (530)
T ss_pred HHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC---CCEEEEEeCCHH-HHHHhCCEEEEEECCeEEEcCCCHHHHH
Confidence 999999999999999999999999999999999886 359999999975 577889999999999998 889887764
Q ss_pred H
Q 004537 385 A 385 (746)
Q Consensus 385 ~ 385 (746)
+
T Consensus 525 ~ 525 (530)
T PRK15064 525 R 525 (530)
T ss_pred H
Confidence 3
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-36 Score=346.35 Aligned_cols=211 Identities=27% Similarity=0.370 Sum_probs=171.4
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCChhcc
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~ 228 (746)
.++++||+++|. +++++|+|+||+|++|++++|+|||||||||||++|+|.. ++.+|+|.+++ +
T Consensus 4 ~i~~~nls~~~~-------~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~--~p~~G~i~~~~-------~ 67 (552)
T TIGR03719 4 IYTMNRVSKVVP-------PKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVD--KEFNGEARPAP-------G 67 (552)
T ss_pred EEEEeeEEEecC-------CCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCC--CCCCceEEecC-------C
Confidence 589999999982 1457999999999999999999999999999999999964 24689999975 2
Q ss_pred CcEEEEecCCcCCCCCCHHHHHHHHHhc-cC-----------CCCCcHH---------------------HHHHHHHHHH
Q 004537 229 SKIGFVTQDDVLFPHLTVKETLTYAALL-RL-----------PNTLTKQ---------------------QKEKRAIDVI 275 (746)
Q Consensus 229 ~~i~yv~Q~~~l~~~lTV~E~l~~~~~~-~~-----------~~~~~~~---------------------~~~~~v~~~l 275 (746)
..||||+|++.+++.+||+||+.++... +. ......+ ....++.+++
T Consensus 68 ~~i~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 147 (552)
T TIGR03719 68 IKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAM 147 (552)
T ss_pred CEEEEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHH
Confidence 4699999999999999999999875321 00 0000010 0123566777
Q ss_pred HHcCCCccccccccCccccCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCC
Q 004537 276 NELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQP 355 (746)
Q Consensus 276 ~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~ 355 (746)
+.+|++. .+. .+..|||||||||+|||+|+.+|++|||||||++||+.++..+.+.|+++ +.|||++||++
T Consensus 148 ~~~~l~~-~~~-----~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~---~~tvIiisHd~ 218 (552)
T TIGR03719 148 DALRCPP-WDA-----DVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY---PGTVVAVTHDR 218 (552)
T ss_pred hhCCCCc-ccC-----chhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC---CCeEEEEeCCH
Confidence 8888853 343 34689999999999999999999999999999999999999999999876 35999999997
Q ss_pred ChHHHhccCEEEEEeCCeEE-EecCHHHHHH
Q 004537 356 SSRLFHKFDKLILLGKGSLL-YFGKASEAMA 385 (746)
Q Consensus 356 ~~~i~~~~D~i~vL~~G~iv-~~G~~~~~~~ 385 (746)
. .+...||++++|++|+++ +.|+.++..+
T Consensus 219 ~-~~~~~~d~v~~l~~g~i~~~~g~~~~~~~ 248 (552)
T TIGR03719 219 Y-FLDNVAGWILELDRGRGIPWEGNYSSWLE 248 (552)
T ss_pred H-HHHhhcCeEEEEECCEEEEecCCHHHHHH
Confidence 5 577889999999999975 7898887654
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-36 Score=307.20 Aligned_cols=194 Identities=26% Similarity=0.440 Sum_probs=165.8
Q ss_pred eEEEEeEEEEEeeccc-cccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCChhc
Q 004537 149 YLKFTDVTYKVILKGM-TSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~-~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~ 227 (746)
.++++|+++.|..+.. .......+++||||+|++||+++|+|+||||||||-|+|.|. .. +++|+|+++|+++....
T Consensus 4 ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L-~~-pt~G~i~f~g~~i~~~~ 81 (268)
T COG4608 4 LLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGL-EE-PTSGEILFEGKDITKLS 81 (268)
T ss_pred eEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcC-cC-CCCceEEEcCcchhhcc
Confidence 5899999999975431 111124799999999999999999999999999999999974 43 46899999999864211
Q ss_pred cCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHH
Q 004537 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (746)
Q Consensus 228 ~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA 307 (746)
+++..+++.++++.+||.... .++++++||||||||++||
T Consensus 82 ------------------------------------~~~~~~~v~elL~~Vgl~~~~----~~ryPhelSGGQrQRi~IA 121 (268)
T COG4608 82 ------------------------------------KEERRERVLELLEKVGLPEEF----LYRYPHELSGGQRQRIGIA 121 (268)
T ss_pred ------------------------------------hhHHHHHHHHHHHHhCCCHHH----hhcCCcccCchhhhhHHHH
Confidence 345667899999999986421 2357899999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHHH
Q 004537 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (746)
Q Consensus 308 ~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 385 (746)
|||+.+|+++++|||||+||...+.+++++|+++.++ |.|.++++||++ .+..++|||.+|..|+||+.|+.+++..
T Consensus 122 RALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~-vv~~isdri~VMy~G~iVE~g~~~~~~~ 199 (268)
T COG4608 122 RALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLS-VVRYISDRIAVMYLGKIVEIGPTEEVFS 199 (268)
T ss_pred HHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHH-hhhhhcccEEEEecCceeEecCHHHHhh
Confidence 9999999999999999999999999999999999865 999999999976 4788899999999999999999999863
|
|
| >cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=310.10 Aligned_cols=189 Identities=25% Similarity=0.310 Sum_probs=154.2
Q ss_pred cceeceEEEEe-----CCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEecCCcCCCCCC
Q 004537 171 DILNGITGSVN-----PGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLT 245 (746)
Q Consensus 171 ~iL~~vs~~i~-----~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lT 245 (746)
..++|++++++ +||+++|+||||||||||+++|+|.. ++.+|+|.++|. .|+|++|+...++.+|
T Consensus 8 ~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~--~p~~G~i~~~g~--------~i~~~~q~~~~~~~~t 77 (246)
T cd03237 8 KTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVL--KPDEGDIEIELD--------TVSYKPQYIKADYEGT 77 (246)
T ss_pred cccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCC--cCCCCeEEECCc--------eEEEecccccCCCCCC
Confidence 36677777776 79999999999999999999999954 356899999985 5899999987766789
Q ss_pred HHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 004537 246 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSG 325 (746)
Q Consensus 246 V~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~illLDEPTsg 325 (746)
|+|++.+...... . ....+.++++.++|.+..++. +..|||||||||+||++|+.+|+++||||||++
T Consensus 78 v~e~l~~~~~~~~----~---~~~~~~~~l~~l~l~~~~~~~-----~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~ 145 (246)
T cd03237 78 VRDLLSSITKDFY----T---HPYFKTEIAKPLQIEQILDRE-----VPELSGGELQRVAIAACLSKDADIYLLDEPSAY 145 (246)
T ss_pred HHHHHHHHhhhcc----c---cHHHHHHHHHHcCCHHHhhCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 9999976532110 0 122356788999998766654 468999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEE--EecCHHH
Q 004537 326 LDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLL--YFGKASE 382 (746)
Q Consensus 326 LD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv--~~G~~~~ 382 (746)
||+.++..+.+.|++++++ |+|||+++|++. .+...||++++|+++..+ ..+++.+
T Consensus 146 LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~-~~~~~~d~i~~l~~~~~~~~~~~~~~~ 204 (246)
T cd03237 146 LDVEQRLMASKVIRRFAENNEKTAFVVEHDII-MIDYLADRLIVFEGEPSVNGVANPPQS 204 (246)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEcCCCeeEEEeCCchH
Confidence 9999999999999999764 899999999975 566789999999764333 3445544
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-36 Score=291.12 Aligned_cols=220 Identities=27% Similarity=0.443 Sum_probs=190.6
Q ss_pred ceEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECC-EeCCh-
Q 004537 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYND-HPYSK- 225 (746)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G-~~~~~- 225 (746)
..|+++||+.++ +...+|+|+||++.+||+-+|+|||||||||++++|+|.. ++..|+|+++| .++++
T Consensus 4 ~iL~~~~vsVsF--------~GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKt--rp~~G~v~f~g~~dl~~~ 73 (249)
T COG4674 4 IILYLDGVSVSF--------GGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKT--RPQEGEVLFDGDTDLTKL 73 (249)
T ss_pred ceEEEeceEEEE--------cceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccC--CCCcceEEEcCchhhccC
Confidence 468999999998 5667999999999999999999999999999999999953 45689999999 77753
Q ss_pred ----hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCC-----CCcHHHHHHHHHHHHHHcCCCccccccccCccccCC
Q 004537 226 ----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPN-----TLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGV 296 (746)
Q Consensus 226 ----~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~-----~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~L 296 (746)
..|..||--||.|..|+.+||+|||..+.....+- .-...+.+++++++|+..||.+.++...+ .|
T Consensus 74 ~e~~IAr~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~-----~L 148 (249)
T COG4674 74 PEHRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAA-----LL 148 (249)
T ss_pred CHHHHHHhccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhh-----hh
Confidence 23567999999999999999999999876432110 01124456789999999999998886653 69
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEE
Q 004537 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (746)
Q Consensus 297 SGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~ 376 (746)
|-||||++.|++-++.+|++|+||||++|+--+...+.-++|+.++. +++|+++-||+. .+.+++|+|-||++|.+..
T Consensus 149 SHGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~-~hsilVVEHDM~-Fvr~~A~~VTVlh~G~VL~ 226 (249)
T COG4674 149 SHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAG-KHSILVVEHDMG-FVREIADKVTVLHEGSVLA 226 (249)
T ss_pred ccchhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhc-CceEEEEeccHH-HHHHhhheeEEEeccceee
Confidence 99999999999999999999999999999999999999999999986 789999999975 5889999999999999999
Q ss_pred ecCHHHHH
Q 004537 377 FGKASEAM 384 (746)
Q Consensus 377 ~G~~~~~~ 384 (746)
.|+.+++.
T Consensus 227 EGsld~v~ 234 (249)
T COG4674 227 EGSLDEVQ 234 (249)
T ss_pred cccHHHhh
Confidence 99998874
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-35 Score=340.10 Aligned_cols=205 Identities=22% Similarity=0.374 Sum_probs=168.3
Q ss_pred ceEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCChhc
Q 004537 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (746)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~ 227 (746)
..|+++||++.| +++.+|+|+|++|++||+++|+||||||||||+++|+|.. ++.+|+|.+++.
T Consensus 323 ~~l~~~~l~~~~--------~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~--~p~~G~i~~~~~------ 386 (556)
T PRK11819 323 KVIEAENLSKSF--------GDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQE--QPDSGTIKIGET------ 386 (556)
T ss_pred eEEEEEeEEEEE--------CCeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC--CCCCeEEEECCc------
Confidence 369999999998 3457999999999999999999999999999999999954 356899999542
Q ss_pred cCcEEEEecCC-cCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCc-cccccccCccccCCCHHHHHHHH
Q 004537 228 KSKIGFVTQDD-VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVRGVSGGERKRVC 305 (746)
Q Consensus 228 ~~~i~yv~Q~~-~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSGGerqRv~ 305 (746)
..||||+|++ .+++.+||+||+.+...... .... ...+.++++.+|+.+ ..+.. +.+|||||||||+
T Consensus 387 -~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~---~~~~--~~~~~~~l~~~~l~~~~~~~~-----~~~LSgG~~qrv~ 455 (556)
T PRK11819 387 -VKLAYVDQSRDALDPNKTVWEEISGGLDIIK---VGNR--EIPSRAYVGRFNFKGGDQQKK-----VGVLSGGERNRLH 455 (556)
T ss_pred -eEEEEEeCchhhcCCCCCHHHHHHhhccccc---cccc--HHHHHHHHHhCCCChhHhcCc-----hhhCCHHHHHHHH
Confidence 1599999996 78888999999998643211 1111 123457899999964 34543 4689999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeC-CeEE-EecCHHHH
Q 004537 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK-GSLL-YFGKASEA 383 (746)
Q Consensus 306 IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~-G~iv-~~G~~~~~ 383 (746)
|||+|+.+|++|||||||+|||+.++..+.+.|+++. | |||++||++. .+.+.||+|++|++ |++. +.|+.++.
T Consensus 456 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-tvi~vtHd~~-~~~~~~d~i~~l~~~g~~~~~~g~~~~~ 531 (556)
T PRK11819 456 LAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFP--G-CAVVISHDRW-FLDRIATHILAFEGDSQVEWFEGNFQEY 531 (556)
T ss_pred HHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC--C-eEEEEECCHH-HHHHhCCEEEEEECCCeEEEecCCHHHH
Confidence 9999999999999999999999999999999999872 4 8999999975 57788999999986 7876 56665543
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-36 Score=364.32 Aligned_cols=223 Identities=26% Similarity=0.430 Sum_probs=183.9
Q ss_pred CceEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh-
Q 004537 147 PIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK- 225 (746)
Q Consensus 147 ~~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~- 225 (746)
...|+|+|++.+|. .+...||||||++|+|||.+||+|..|||||||+++|- |+.++ .+|+|.+||.|+.+
T Consensus 1136 ~G~I~f~~~~~RYr------p~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLF-Rl~e~-~~G~I~IDgvdI~~i 1207 (1381)
T KOG0054|consen 1136 KGEIEFEDLSLRYR------PNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALF-RLVEP-AEGEILIDGVDISKI 1207 (1381)
T ss_pred CCeEEEEEeEEEeC------CCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHH-HhcCc-cCCeEEEcCeecccc
Confidence 35799999999993 23468999999999999999999999999999999999 56554 58999999999974
Q ss_pred ---hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHH
Q 004537 226 ---SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (746)
Q Consensus 226 ---~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerq 302 (746)
++|++++.+||||.+|.. |||.||.=.... .++.++++-.+...++.++. ++...|+.+.+. ...+|-||||
T Consensus 1208 gL~dLRsrlsIIPQdPvLFsG-TvR~NLDPf~e~-sD~~IW~ALe~~~Lk~~v~~--~p~~Ld~~v~eg-G~N~SvGQRQ 1282 (1381)
T KOG0054|consen 1208 GLHDLRSRLSIIPQDPVLFSG-TVRFNLDPFDEY-SDDEIWEALERCQLKDVVSS--LPGGLDSEVSEG-GENFSVGQRQ 1282 (1381)
T ss_pred cHHHHHhcCeeeCCCCceecC-ccccccCccccc-CHHHHHHHHHHhChHHHHhh--CCcCCCceecCC-CccCChHHHH
Confidence 789999999999999985 999999632111 11122233333344445543 345577777543 4579999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHH
Q 004537 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (746)
Q Consensus 303 Rv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~ 382 (746)
-+++||||+++++||+|||+|++.|+++-..|.+.|++--+ ++|||.+.|+..+ +. .+|||+||++|+++++|+|.+
T Consensus 1283 LlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~-dcTVltIAHRl~T-Vm-d~DrVlVld~G~v~EfdsP~~ 1359 (1381)
T KOG0054|consen 1283 LLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEFK-DCTVLTIAHRLNT-VM-DSDRVLVLDAGRVVEFDSPAE 1359 (1381)
T ss_pred HHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhc-CCeEEEEeeccch-hh-hcCeEEEeeCCeEeecCChHH
Confidence 99999999999999999999999999999999999998543 8999999999886 44 489999999999999999999
Q ss_pred HHH
Q 004537 383 AMA 385 (746)
Q Consensus 383 ~~~ 385 (746)
+++
T Consensus 1360 Ll~ 1362 (1381)
T KOG0054|consen 1360 LLS 1362 (1381)
T ss_pred HHh
Confidence 985
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-36 Score=383.62 Aligned_cols=209 Identities=22% Similarity=0.404 Sum_probs=171.3
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCChhcc
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~ 228 (746)
.++++|++|.|. ..++++|+|+|+++++||+++|+||||||||||+++|+|.. ++.+|+|.++|
T Consensus 636 ~i~~~~~~~~~~------~~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~--~~~~G~i~~~g-------- 699 (1522)
T TIGR00957 636 SITVHNATFTWA------RDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEM--DKVEGHVHMKG-------- 699 (1522)
T ss_pred cEEEEEeEEEcC------CCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC--ccCCcEEEECC--------
Confidence 699999999983 12357999999999999999999999999999999999954 34689999987
Q ss_pred CcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHH---HHHHcC-CCccccccccCccccCCCHHHHHHH
Q 004537 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAID---VINELG-LERCQDTMIGGSFVRGVSGGERKRV 304 (746)
Q Consensus 229 ~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~---~l~~lg-L~~~~~~~vg~~~~~~LSGGerqRv 304 (746)
+|+||+|++.+++ .||+|||.|+.. .+++.. +++.+ +.+.++ +++..+|.+|+. ...||||||||+
T Consensus 700 -~i~yv~Q~~~l~~-~Ti~eNI~~g~~------~~~~~~-~~~~~~~~l~~~l~~~~~g~~t~ig~~-g~~LSGGQkqRi 769 (1522)
T TIGR00957 700 -SVAYVPQQAWIQN-DSLRENILFGKA------LNEKYY-QQVLEACALLPDLEILPSGDRTEIGEK-GVNLSGGQKQRV 769 (1522)
T ss_pred -EEEEEcCCccccC-CcHHHHhhcCCc------cCHHHH-HHHHHHhCCHHHHHhcCCCCCceecCC-CCCCCHHHHHHH
Confidence 4999999999886 699999998632 122221 11222 122332 355667888765 467999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH--HHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHH
Q 004537 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI--AEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (746)
Q Consensus 305 ~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l--~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~ 382 (746)
+||||++.+|++++||||||+||+.++..+.+.+.+. ..+|+|+|++||++.. ...||+|++|++|++++.|++++
T Consensus 770 aLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~--l~~~D~ii~l~~G~i~~~g~~~~ 847 (1522)
T TIGR00957 770 SLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISY--LPQVDVIIVMSGGKISEMGSYQE 847 (1522)
T ss_pred HHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhh--hhhCCEEEEecCCeEEeeCCHHH
Confidence 9999999999999999999999999999999999753 2348999999999863 45699999999999999999999
Q ss_pred HHH
Q 004537 383 AMA 385 (746)
Q Consensus 383 ~~~ 385 (746)
+.+
T Consensus 848 l~~ 850 (1522)
T TIGR00957 848 LLQ 850 (1522)
T ss_pred HHh
Confidence 864
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-35 Score=337.81 Aligned_cols=204 Identities=25% Similarity=0.394 Sum_probs=167.6
Q ss_pred ceEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCChhc
Q 004537 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (746)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~ 227 (746)
..++++|++++| +++.+|+|+|++|++||+++|+||||||||||+++|+|.. ++.+|+|.+++.
T Consensus 321 ~~l~~~~l~~~~--------~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~--~p~~G~i~~~~~------ 384 (552)
T TIGR03719 321 KVIEAENLSKGF--------GDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQE--QPDSGTIKIGET------ 384 (552)
T ss_pred eEEEEeeEEEEE--------CCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCC--CCCCeEEEECCc------
Confidence 369999999998 3457999999999999999999999999999999999954 356899999542
Q ss_pred cCcEEEEecCC-cCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCc-cccccccCccccCCCHHHHHHHH
Q 004537 228 KSKIGFVTQDD-VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVRGVSGGERKRVC 305 (746)
Q Consensus 228 ~~~i~yv~Q~~-~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSGGerqRv~ 305 (746)
..|||++|++ .+++.+||.||+.++..... .... +.++.++++.+|+.+ ..+.. +..|||||||||+
T Consensus 385 -~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~---~~~~--~~~~~~~l~~~~l~~~~~~~~-----~~~LSgGe~qrv~ 453 (552)
T TIGR03719 385 -VKLAYVDQSRDALDPNKTVWEEISGGLDIIQ---LGKR--EVPSRAYVGRFNFKGSDQQKK-----VGQLSGGERNRVH 453 (552)
T ss_pred -eEEEEEeCCccccCCCCcHHHHHHhhccccc---cCcc--hHHHHHHHHhCCCChhHhcCc-----hhhCCHHHHHHHH
Confidence 1599999996 47888999999998643211 1111 223557899999964 34543 4689999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeC-CeEE-EecCHHH
Q 004537 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK-GSLL-YFGKASE 382 (746)
Q Consensus 306 IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~-G~iv-~~G~~~~ 382 (746)
|||+|+.+|++|||||||+|||+.++..+.+.|+++. + |||++||++. .+.+.||++++|++ |+++ +.|+.++
T Consensus 454 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-~viivsHd~~-~~~~~~d~i~~l~~~~~~~~~~g~~~~ 528 (552)
T TIGR03719 454 LAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFA--G-CAVVISHDRW-FLDRIATHILAFEGDSHVEWFEGNYSE 528 (552)
T ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC--C-eEEEEeCCHH-HHHHhCCEEEEEECCCeEEEeCCCHHH
Confidence 9999999999999999999999999999999999872 4 8999999975 57788999999987 5876 5566544
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-35 Score=307.29 Aligned_cols=199 Identities=26% Similarity=0.370 Sum_probs=162.8
Q ss_pred eEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEE-----------ECCEe
Q 004537 154 DVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSIT-----------YNDHP 222 (746)
Q Consensus 154 nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~-----------~~G~~ 222 (746)
||+++|. ..+.+|+|+| .+++||+++|+||||||||||+|+|+|.. ++++|+|. ++|++
T Consensus 5 ~~~~~y~-------~~~~~l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~--~p~~G~I~~~~~~~~~~~~~~g~~ 74 (255)
T cd03236 5 EPVHRYG-------PNSFKLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGKL--KPNLGKFDDPPDWDEILDEFRGSE 74 (255)
T ss_pred Ccceeec-------CcchhhhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCc--CCCCceEeeccccchhhhhccCch
Confidence 5777772 1235999999 59999999999999999999999999964 35689996 88887
Q ss_pred CCh---hcc---CcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCC
Q 004537 223 YSK---SLK---SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGV 296 (746)
Q Consensus 223 ~~~---~~~---~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~L 296 (746)
+.+ ..+ ..++|++|+..+++. ++.+++.+.. .....++.+.++++.+||.+..+.. +..|
T Consensus 75 ~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~i~~~l--------~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~L 140 (255)
T cd03236 75 LQNYFTKLLEGDVKVIVKPQYVDLIPK-AVKGKVGELL--------KKKDERGKLDELVDQLELRHVLDRN-----IDQL 140 (255)
T ss_pred hhhhhHHhhhcccceeeecchhccCch-HHHHHHHHHh--------chhHHHHHHHHHHHHcCCchhhcCC-----hhhC
Confidence 643 111 247999999888874 8888887642 1223345678999999998766543 4689
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEE
Q 004537 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (746)
Q Consensus 297 SGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~ 376 (746)
|||||||++|||+|+.+|++++|||||++||+.++..+.+.|++++++|+|||+++|++. .+.+.||+|++| +|++.+
T Consensus 141 S~G~~qrv~laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~-~~~~~ad~i~~l-~~~~~~ 218 (255)
T cd03236 141 SGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLA-VLDYLSDYIHCL-YGEPGA 218 (255)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEE-CCCCCc
Confidence 999999999999999999999999999999999999999999999877899999999975 466789999999 466665
Q ss_pred ec
Q 004537 377 FG 378 (746)
Q Consensus 377 ~G 378 (746)
.|
T Consensus 219 ~~ 220 (255)
T cd03236 219 YG 220 (255)
T ss_pred ce
Confidence 44
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=337.00 Aligned_cols=197 Identities=29% Similarity=0.373 Sum_probs=168.4
Q ss_pred ceEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCChhc
Q 004537 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (746)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~ 227 (746)
..++++|+++.| ++ ..|+++|++|++||+++|+||||||||||+++|+|.+ ++.+|+|.++
T Consensus 339 ~~l~~~~ls~~~--------~~-~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~--~p~~G~I~~~-------- 399 (590)
T PRK13409 339 TLVEYPDLTKKL--------GD-FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVL--KPDEGEVDPE-------- 399 (590)
T ss_pred eEEEEcceEEEE--------CC-EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCC--CCCceEEEEe--------
Confidence 469999999988 22 2599999999999999999999999999999999964 3568999986
Q ss_pred cCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHH
Q 004537 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (746)
Q Consensus 228 ~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA 307 (746)
..++|++|+..+++.+||+||+.+.... ... ...++++++.++|.+..++. +..|||||||||+||
T Consensus 400 -~~i~y~~Q~~~~~~~~tv~e~l~~~~~~-----~~~---~~~~~~~L~~l~l~~~~~~~-----~~~LSGGe~QRvaiA 465 (590)
T PRK13409 400 -LKISYKPQYIKPDYDGTVEDLLRSITDD-----LGS---SYYKSEIIKPLQLERLLDKN-----VKDLSGGELQRVAIA 465 (590)
T ss_pred -eeEEEecccccCCCCCcHHHHHHHHhhh-----cCh---HHHHHHHHHHCCCHHHHhCC-----cccCCHHHHHHHHHH
Confidence 1599999998888889999999875321 111 12467899999998766654 468999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecC
Q 004537 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (746)
Q Consensus 308 ~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (746)
|+|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++|||+. .+...||++++|+ |++...|+
T Consensus 466 raL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~-~~~~~aDrvivl~-~~~~~~g~ 536 (590)
T PRK13409 466 ACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIY-MIDYISDRLMVFE-GEPGKHGH 536 (590)
T ss_pred HHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEc-Ccceeeee
Confidence 9999999999999999999999999999999999764 899999999975 5778899999996 58877776
|
|
| >COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-35 Score=299.23 Aligned_cols=208 Identities=27% Similarity=0.421 Sum_probs=178.9
Q ss_pred ccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---hccCcEEEEe-cCCcCCCCCC
Q 004537 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---SLKSKIGFVT-QDDVLFPHLT 245 (746)
Q Consensus 170 ~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---~~~~~i~yv~-Q~~~l~~~lT 245 (746)
..+.+||||+|++|++++++|||||||||+||+|+|.+. +.+|.|.++|.+.-+ ++-+++++|+ |.-.+.-.+.
T Consensus 37 ~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~--p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp 114 (325)
T COG4586 37 IEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLL--PTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLP 114 (325)
T ss_pred hhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccc--cCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeech
Confidence 358999999999999999999999999999999999654 568999999986532 3446677776 4455655667
Q ss_pred HHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 004537 246 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSG 325 (746)
Q Consensus 246 V~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~illLDEPTsg 325 (746)
+.|.+......+ +++.++..++.+.+.+.|+|+...+.+ +|.||-|||.|+.||.+|+++|+||||||||-|
T Consensus 115 ~~ds~~v~~~Iy---~Ipd~~F~~r~~~l~eiLdl~~~lk~~-----vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvg 186 (325)
T COG4586 115 ALDSLEVLKLIY---EIPDDEFAERLDFLTEILDLEGFLKWP-----VRKLSLGQRMRAELAAALLHPPKVLFLDEPTVG 186 (325)
T ss_pred hhhhHHHHHHHH---hCCHHHHHHHHHHHHHHhcchhhhhhh-----hhhccchHHHHHHHHHHhcCCCcEEEecCCccC
Confidence 788777654333 467788888999999999998877765 478999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHH-CCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHHHHHH
Q 004537 326 LDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFS 388 (746)
Q Consensus 326 LD~~~~~~i~~~L~~l~~-~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~~f~ 388 (746)
||..++..|.+.|++..+ .+.||+.+||+.+ ++.++||||++|+.|+++|.|+.+++.+.|.
T Consensus 187 LDV~aq~~ir~Flke~n~~~~aTVllTTH~~~-di~~lc~rv~~I~~Gqlv~dg~l~~l~~~f~ 249 (325)
T COG4586 187 LDVNAQANIREFLKEYNEERQATVLLTTHIFD-DIATLCDRVLLIDQGQLVFDGTLAQLQEQFG 249 (325)
T ss_pred cchhHHHHHHHHHHHHHHhhCceEEEEecchh-hHHHhhhheEEeeCCcEeecccHHHHHHHhC
Confidence 999999999999999875 4899999999976 5889999999999999999999999988764
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-34 Score=338.38 Aligned_cols=203 Identities=29% Similarity=0.440 Sum_probs=169.4
Q ss_pred ceEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCChhc
Q 004537 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (746)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~ 227 (746)
..|+++||++.| +++.+|+|+||+|++|++++|+||||||||||||+|+|.. ++++|+|.+++.
T Consensus 311 ~~l~~~~l~~~y--------~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~--~p~~G~i~~~~~------ 374 (638)
T PRK10636 311 PLLKMEKVSAGY--------GDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGEL--APVSGEIGLAKG------ 374 (638)
T ss_pred ceEEEEeeEEEe--------CCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCC--CCCCCeEEECCC------
Confidence 369999999998 3467999999999999999999999999999999999964 356899999742
Q ss_pred cCcEEEEecCC--cCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCc-cccccccCccccCCCHHHHHHH
Q 004537 228 KSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVRGVSGGERKRV 304 (746)
Q Consensus 228 ~~~i~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSGGerqRv 304 (746)
.++||++|+. .+.+..|+.+++.-. . .....+++.++++.+++.. ..++. +..|||||||||
T Consensus 375 -~~igy~~Q~~~~~l~~~~~~~~~~~~~----~-----~~~~~~~~~~~L~~~~l~~~~~~~~-----~~~LSgGekqRl 439 (638)
T PRK10636 375 -IKLGYFAQHQLEFLRADESPLQHLARL----A-----PQELEQKLRDYLGGFGFQGDKVTEE-----TRRFSGGEKARL 439 (638)
T ss_pred -EEEEEecCcchhhCCccchHHHHHHHh----C-----chhhHHHHHHHHHHcCCChhHhcCc-----hhhCCHHHHHHH
Confidence 2599999974 355667888876421 0 1123456788999999963 45544 468999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEE-EecCHHHH
Q 004537 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLL-YFGKASEA 383 (746)
Q Consensus 305 ~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv-~~G~~~~~ 383 (746)
+||++|+.+|++|||||||+|||+.+...+.+.|+++ .| |||++|||+. .+.+.||+|++|++|+++ +.|+.++.
T Consensus 440 ~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~g-tvi~vSHd~~-~~~~~~d~i~~l~~G~i~~~~g~~~~~ 515 (638)
T PRK10636 440 VLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF--EG-ALVVVSHDRH-LLRSTTDDLYLVHDGKVEPFDGDLEDY 515 (638)
T ss_pred HHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CC-eEEEEeCCHH-HHHHhCCEEEEEECCEEEEcCCCHHHH
Confidence 9999999999999999999999999999999999987 34 9999999965 577889999999999997 88998876
Q ss_pred HH
Q 004537 384 MA 385 (746)
Q Consensus 384 ~~ 385 (746)
.+
T Consensus 516 ~~ 517 (638)
T PRK10636 516 QQ 517 (638)
T ss_pred HH
Confidence 43
|
|
| >COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=285.02 Aligned_cols=203 Identities=28% Similarity=0.416 Sum_probs=168.6
Q ss_pred ccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCChh----ccCcEEEEecCCc--CC
Q 004537 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS----LKSKIGFVTQDDV--LF 241 (746)
Q Consensus 168 ~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~----~~~~i~yv~Q~~~--l~ 241 (746)
.++++|+++|++|..|+++-|+|.||||||||+|+|+|.+. +++|+|.+||.++++. ....++-|+|||. .+
T Consensus 17 ~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~--~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~ 94 (263)
T COG1101 17 LEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLK--PTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTA 94 (263)
T ss_pred hHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccc--cCCceEEECceecccCCHHHHhhHHHHHhcchhhCCc
Confidence 56789999999999999999999999999999999999763 5699999999999742 2345889999985 69
Q ss_pred CCCCHHHHHHHHHhccCCCCCcH---HHHHHHHHHHHHHc--CCCccccccccCccccCCCHHHHHHHHHHHHHhhCCCE
Q 004537 242 PHLTVKETLTYAALLRLPNTLTK---QQKEKRAIDVINEL--GLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSL 316 (746)
Q Consensus 242 ~~lTV~E~l~~~~~~~~~~~~~~---~~~~~~v~~~l~~l--gL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~i 316 (746)
+.||+.||+..+......+.++. ..+.+...+-++.+ ||++..++++| -|||||||-+++++|-++.|+|
T Consensus 95 ~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~ig-----lLSGGQRQalsL~MAtl~~pki 169 (263)
T COG1101 95 PELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIG-----LLSGGQRQALSLLMATLHPPKI 169 (263)
T ss_pred ccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhh-----hccchHHHHHHHHHHhcCCCcE
Confidence 99999999998764322222332 22333344455554 66777777765 6999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEec
Q 004537 317 LFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (746)
Q Consensus 317 llLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G 378 (746)
|+|||-|++|||.++..+++.=.++.++ +.|.+++||.+. +..++-+|.++|++|+||..=
T Consensus 170 LLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~-~Al~yG~RlImLh~G~IvlDv 231 (263)
T COG1101 170 LLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNME-DALDYGNRLIMLHSGKIVLDV 231 (263)
T ss_pred EEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHH-HHHhhCCeEEEEeCCeEEEEc
Confidence 9999999999999999999999998755 679999999976 567999999999999999763
|
|
| >COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=270.10 Aligned_cols=191 Identities=31% Similarity=0.499 Sum_probs=166.4
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCC-CCccEEEECCEeCCh--
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP-TVGGSITYNDHPYSK-- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~-~~~G~I~~~G~~~~~-- 225 (746)
.+.++||+.+. ++...|.|+|++|.+||++-||||||||||||+..+.|.+... ..+|++++|+++++.
T Consensus 2 ~l~l~nvsl~l--------~g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lP 73 (213)
T COG4136 2 MLCLKNVSLRL--------PGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLP 73 (213)
T ss_pred ceeeeeeeecC--------CCceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccc
Confidence 46788998654 5678999999999999999999999999999999999976432 368999999998863
Q ss_pred hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHH
Q 004537 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (746)
Q Consensus 226 ~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~ 305 (746)
..+|++|+.+||+.+||+++|.+||.|+ +|..+..+.++..++..+++.||....+. .+.+||||||-||+
T Consensus 74 a~qRq~GiLFQD~lLFphlsVg~Nl~fA----lp~~~KG~aRr~~a~aAL~~~gL~g~f~~-----dP~tlSGGQrARva 144 (213)
T COG4136 74 AAQRQIGILFQDALLFPHLSVGQNLLFA----LPATLKGNARRNAANAALERSGLDGAFHQ-----DPATLSGGQRARVA 144 (213)
T ss_pred hhhhheeeeecccccccccccccceEEe----cCcccccHHHHhhHHHHHHHhccchhhhc-----ChhhcCcchHHHHH
Confidence 4578999999999999999999999997 45566667788889999999999877664 45789999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH-HHCCCEEEEEecCCC
Q 004537 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI-AEAGKTVVTTIHQPS 356 (746)
Q Consensus 306 IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l-~~~g~Tvi~~~H~~~ 356 (746)
+-|+|+..|+.++||||+|.||..-+.++.+..-.- ...|..+|.+|||..
T Consensus 145 L~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~ 196 (213)
T COG4136 145 LLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQ 196 (213)
T ss_pred HHHHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccc
Confidence 999999999999999999999999999999887654 445999999999954
|
|
| >cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-34 Score=274.25 Aligned_cols=144 Identities=33% Similarity=0.564 Sum_probs=130.2
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCChhccC
Q 004537 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKS 229 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~ 229 (746)
++++|++++| ++..+|+|+|+++++||+++|+||||||||||+++|+|.. ++.+|+|.++|+ +
T Consensus 1 l~~~~l~~~~--------~~~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~--~~~~G~i~~~~~-------~ 63 (144)
T cd03221 1 IELENLSKTY--------GGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGEL--EPDEGIVTWGST-------V 63 (144)
T ss_pred CEEEEEEEEE--------CCceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCC--CCCceEEEECCe-------E
Confidence 4689999988 2346999999999999999999999999999999999954 356899999984 4
Q ss_pred cEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHHHH
Q 004537 230 KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNE 309 (746)
Q Consensus 230 ~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~a 309 (746)
.++|++| ||+||+||++|||+
T Consensus 64 ~i~~~~~-----------------------------------------------------------lS~G~~~rv~lara 84 (144)
T cd03221 64 KIGYFEQ-----------------------------------------------------------LSGGEKMRLALAKL 84 (144)
T ss_pred EEEEEcc-----------------------------------------------------------CCHHHHHHHHHHHH
Confidence 6899998 99999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCe
Q 004537 310 IIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGS 373 (746)
Q Consensus 310 L~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~ 373 (746)
|+.+|++++|||||+|||+.++..+.+.|+++ ++|+|+++|++. ++.+.||++++|++|+
T Consensus 85 l~~~p~illlDEP~~~LD~~~~~~l~~~l~~~---~~til~~th~~~-~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 85 LLENPNLLLLDEPTNHLDLESIEALEEALKEY---PGTVILVSHDRY-FLDQVATKIIELEDGK 144 (144)
T ss_pred HhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc---CCEEEEEECCHH-HHHHhCCEEEEEeCCC
Confidence 99999999999999999999999999999986 479999999975 5667899999999985
|
EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. |
| >COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-33 Score=282.90 Aligned_cols=224 Identities=22% Similarity=0.320 Sum_probs=190.3
Q ss_pred eEEEEeEEEEEeecc----------------ccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCC
Q 004537 149 YLKFTDVTYKVILKG----------------MTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTV 212 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~----------------~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~ 212 (746)
.++++||++.|.... ........+|+||||++++||.++|+|+||||||||||+|+|.. +|+
T Consensus 3 ~I~~~~V~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~--~Pt 80 (249)
T COG1134 3 VIKVSNVSKKFRIYHEKSYSLKKRLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIY--KPT 80 (249)
T ss_pred EEEeeceeEEEecchhhhhhHHHHHHHHhcCCCCcceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCcc--CCC
Confidence 578888888876432 01123457999999999999999999999999999999999954 356
Q ss_pred ccEEEECCEeCChhccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCcc
Q 004537 213 GGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSF 292 (746)
Q Consensus 213 ~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~ 292 (746)
+|+|.++|+-.. -+--..| +-|.+|.+||+.+-..+. .+++++.+++++++++--+|.+..|.++
T Consensus 81 ~G~v~v~G~v~~-li~lg~G-------f~pelTGreNi~l~~~~~---G~~~~ei~~~~~eIieFaELG~fi~~Pv---- 145 (249)
T COG1134 81 SGKVKVTGKVAP-LIELGAG-------FDPELTGRENIYLRGLIL---GLTRKEIDEKVDEIIEFAELGDFIDQPV---- 145 (249)
T ss_pred CceEEEcceEeh-hhhcccC-------CCcccchHHHHHHHHHHh---CccHHHHHHHHHHHHHHHHHHHHhhCch----
Confidence 999999997421 1111122 345699999999876543 4678899999999999999999998765
Q ss_pred ccCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCC
Q 004537 293 VRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKG 372 (746)
Q Consensus 293 ~~~LSGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G 372 (746)
+..|-||+-|++.|.+...+|+|||+||-.+--|+.-+++-.+.++++.++++|||+++|++. .+.+.||++++|++|
T Consensus 146 -ktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~~~tiv~VSHd~~-~I~~~Cd~~i~l~~G 223 (249)
T COG1134 146 -KTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVSHDLG-AIKQYCDRAIWLEHG 223 (249)
T ss_pred -hhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHcCCEEEEEECCHH-HHHHhcCeeEEEeCC
Confidence 789999999999999999999999999999999999999999999999888899999999975 588999999999999
Q ss_pred eEEEecCHHHHHHHHHhcC
Q 004537 373 SLLYFGKASEAMAYFSSIG 391 (746)
Q Consensus 373 ~iv~~G~~~~~~~~f~~~G 391 (746)
++.+.|++++++++|+...
T Consensus 224 ~i~~~G~~~~vi~~Y~~~~ 242 (249)
T COG1134 224 QIRMEGSPEEVIPAYEEDL 242 (249)
T ss_pred EEEEcCCHHHHHHHHHHhh
Confidence 9999999999999987643
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=333.34 Aligned_cols=205 Identities=26% Similarity=0.454 Sum_probs=168.8
Q ss_pred ceEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCChhc
Q 004537 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (746)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~ 227 (746)
..|+++||++.| +++++|+|+||+|++|++++|+|||||||||||++|+|.. ++.+|+|.+ |.++
T Consensus 318 ~~l~~~~l~~~~--------~~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~--~p~~G~i~~-~~~~---- 382 (635)
T PRK11147 318 IVFEMENVNYQI--------DGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQL--QADSGRIHC-GTKL---- 382 (635)
T ss_pred ceEEEeeeEEEE--------CCeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC--CCCCcEEEE-CCCc----
Confidence 369999999998 3457999999999999999999999999999999999964 356899998 4332
Q ss_pred cCcEEEEecCC-cCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCC-ccccccccCccccCCCHHHHHHHH
Q 004537 228 KSKIGFVTQDD-VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVSGGERKRVC 305 (746)
Q Consensus 228 ~~~i~yv~Q~~-~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSGGerqRv~ 305 (746)
.|||++|+. .+++.+||.||+.++.... ... .....+.++++.+++. +..++. ++.|||||||||+
T Consensus 383 --~i~y~~q~~~~l~~~~tv~e~l~~~~~~~---~~~--~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgGekqRl~ 450 (635)
T PRK11147 383 --EVAYFDQHRAELDPEKTVMDNLAEGKQEV---MVN--GRPRHVLGYLQDFLFHPKRAMTP-----VKALSGGERNRLL 450 (635)
T ss_pred --EEEEEeCcccccCCCCCHHHHHHhhcccc---ccc--chHHHHHHHHHhcCCCHHHHhCh-----hhhCCHHHHHHHH
Confidence 599999985 5888999999998753211 011 1234577889999985 345544 4689999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEe-CCeEE-EecCHHHH
Q 004537 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG-KGSLL-YFGKASEA 383 (746)
Q Consensus 306 IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~-~G~iv-~~G~~~~~ 383 (746)
||++|+.+|++|||||||+|||+.+...+.+.|+++ +.|||++|||.. .+...||++++|+ +|+++ |.|+.++-
T Consensus 451 la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vSHd~~-~~~~~~d~i~~l~~~g~i~~~~g~y~~y 526 (635)
T PRK11147 451 LARLFLKPSNLLILDEPTNDLDVETLELLEELLDSY---QGTVLLVSHDRQ-FVDNTVTECWIFEGNGKIGRYVGGYHDA 526 (635)
T ss_pred HHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC---CCeEEEEECCHH-HHHHhcCEEEEEeCCCeEEEccCCHHHH
Confidence 999999999999999999999999999999999876 459999999965 5778899999998 79985 45776654
|
|
| >cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-34 Score=280.77 Aligned_cols=158 Identities=27% Similarity=0.386 Sum_probs=132.8
Q ss_pred ccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEecCCcCCCCCCHH
Q 004537 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVK 247 (746)
Q Consensus 168 ~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTV~ 247 (746)
..+++|+|+||++++|++++|+||||||||||||+|.+ .+|+|.++|... ...++.++|++|
T Consensus 6 ~~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~------~~G~v~~~~~~~-~~~~~~~~~~~q----------- 67 (176)
T cd03238 6 ANVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY------ASGKARLISFLP-KFSRNKLIFIDQ----------- 67 (176)
T ss_pred eeeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh------cCCcEEECCccc-ccccccEEEEhH-----------
Confidence 35679999999999999999999999999999999863 379999988732 222445888877
Q ss_pred HHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCcc-ccccccCccccCCCHHHHHHHHHHHHHhhC--CCEEEEeCCCC
Q 004537 248 ETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC-QDTMIGGSFVRGVSGGERKRVCIGNEIIIN--PSLLFLDEPTS 324 (746)
Q Consensus 248 E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSGGerqRv~IA~aL~~~--p~illLDEPTs 324 (746)
.++++.++|.+. .+. .++.||||||||++|||+|+.+ |+++||||||+
T Consensus 68 ------------------------~~~l~~~~L~~~~~~~-----~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~ 118 (176)
T cd03238 68 ------------------------LQFLIDVGLGYLTLGQ-----KLSTLSGGELQRVKLASELFSEPPGTLFILDEPST 118 (176)
T ss_pred ------------------------HHHHHHcCCCccccCC-----CcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcc
Confidence 235677787642 443 3568999999999999999999 99999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeE
Q 004537 325 GLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (746)
Q Consensus 325 gLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~i 374 (746)
+||+.++..+.+.|+++.+.|+|||++||++.. + +.||++++|++|+.
T Consensus 119 ~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~-~-~~~d~i~~l~~g~~ 166 (176)
T cd03238 119 GLHQQDINQLLEVIKGLIDLGNTVILIEHNLDV-L-SSADWIIDFGPGSG 166 (176)
T ss_pred cCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-H-HhCCEEEEECCCCC
Confidence 999999999999999998779999999999753 4 67999999966543
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-33 Score=331.63 Aligned_cols=207 Identities=21% Similarity=0.376 Sum_probs=166.0
Q ss_pred ceEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCChhc
Q 004537 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (746)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~ 227 (746)
..|+++||++.|. +++.+|+|+||+|++|++++|+||||||||||||+|+|.+ ++.+|+|.+++
T Consensus 507 ~~L~~~~ls~~y~-------~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll--~p~~G~I~~~~------- 570 (718)
T PLN03073 507 PIISFSDASFGYP-------GGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGEL--QPSSGTVFRSA------- 570 (718)
T ss_pred ceEEEEeeEEEeC-------CCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC--CCCCceEEECC-------
Confidence 4699999999982 2346999999999999999999999999999999999964 35689999875
Q ss_pred cCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCc-cccccccCccccCCCHHHHHHHHH
Q 004537 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVRGVSGGERKRVCI 306 (746)
Q Consensus 228 ~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSGGerqRv~I 306 (746)
+.+|||++|++. +.+++.++.........+. .. .+++.++++.+|+.+ ..+. .+..|||||||||+|
T Consensus 571 ~~~igyv~Q~~~--~~l~~~~~~~~~~~~~~~~-~~----~~~i~~~L~~~gl~~~~~~~-----~~~~LSgGqkqRvaL 638 (718)
T PLN03073 571 KVRMAVFSQHHV--DGLDLSSNPLLYMMRCFPG-VP----EQKLRAHLGSFGVTGNLALQ-----PMYTLSGGQKSRVAF 638 (718)
T ss_pred ceeEEEEecccc--ccCCcchhHHHHHHHhcCC-CC----HHHHHHHHHHCCCChHHhcC-----CccccCHHHHHHHHH
Confidence 246999999852 3456766644322111111 11 345778999999973 3443 356899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEE-EecCHHHHHH
Q 004537 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLL-YFGKASEAMA 385 (746)
Q Consensus 307 A~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv-~~G~~~~~~~ 385 (746)
||+|+.+|++|||||||+|||+.+...+++.|++. .| |||++|||+. .+...||++++|++|+++ +.|+.++..+
T Consensus 639 AraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~--~g-tvIivSHd~~-~i~~~~drv~~l~~G~i~~~~g~~~~~~~ 714 (718)
T PLN03073 639 AKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF--QG-GVLMVSHDEH-LISGSVDELWVVSEGKVTPFHGTFHDYKK 714 (718)
T ss_pred HHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CC-EEEEEECCHH-HHHHhCCEEEEEECCEEEEeCCCHHHHHH
Confidence 99999999999999999999999999999888765 34 9999999975 577889999999999998 7888876544
Q ss_pred H
Q 004537 386 Y 386 (746)
Q Consensus 386 ~ 386 (746)
+
T Consensus 715 ~ 715 (718)
T PLN03073 715 T 715 (718)
T ss_pred H
Confidence 3
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=331.51 Aligned_cols=208 Identities=28% Similarity=0.440 Sum_probs=163.3
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCChhccC
Q 004537 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKS 229 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~ 229 (746)
|+++||+++| +++.+|+||||+|++|++++|+||||||||||||+|+|.. ++++|+|.++|..
T Consensus 2 i~i~nls~~~--------g~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~--~pd~G~I~~~~~~------- 64 (638)
T PRK10636 2 IVFSSLQIRR--------GVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEI--SADGGSYTFPGNW------- 64 (638)
T ss_pred EEEEEEEEEe--------CCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCC--CCCCceEEecCCC-------
Confidence 7899999998 4567999999999999999999999999999999999954 3568999998842
Q ss_pred cEEEEecCCcCCCCCCHHHHHHHHHh--------c-----cCC-----------CCCcHHHHHHHHHHHHHHcCCC-ccc
Q 004537 230 KIGFVTQDDVLFPHLTVKETLTYAAL--------L-----RLP-----------NTLTKQQKEKRAIDVINELGLE-RCQ 284 (746)
Q Consensus 230 ~i~yv~Q~~~l~~~lTV~E~l~~~~~--------~-----~~~-----------~~~~~~~~~~~v~~~l~~lgL~-~~~ 284 (746)
.++|++|++..+. .|+.+.+.-... + ... ........+.++.++++.+|+. +..
T Consensus 65 ~i~~~~q~~~~~~-~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~ 143 (638)
T PRK10636 65 QLAWVNQETPALP-QPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQL 143 (638)
T ss_pred EEEEEecCCCCCC-CCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhh
Confidence 3889998654432 466554431100 0 000 0000012345788899999996 455
Q ss_pred cccccCccccCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccC
Q 004537 285 DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFD 364 (746)
Q Consensus 285 ~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D 364 (746)
+.. +..|||||||||+||++|+.+|++|||||||++||+.+...+.+.|+++ +.|||+||||.. .+.+.||
T Consensus 144 ~~~-----~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~---~~tviivsHd~~-~l~~~~d 214 (638)
T PRK10636 144 ERP-----VSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY---QGTLILISHDRD-FLDPIVD 214 (638)
T ss_pred cCc-----hhhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC---CCeEEEEeCCHH-HHHHhcC
Confidence 554 4589999999999999999999999999999999999999999998875 569999999965 5778899
Q ss_pred EEEEEeCCeEE-EecCHHHHH
Q 004537 365 KLILLGKGSLL-YFGKASEAM 384 (746)
Q Consensus 365 ~i~vL~~G~iv-~~G~~~~~~ 384 (746)
+|++|++|+++ |.|+.++..
T Consensus 215 ~i~~L~~G~i~~~~g~~~~~~ 235 (638)
T PRK10636 215 KIIHIEQQSLFEYTGNYSSFE 235 (638)
T ss_pred EEEEEeCCEEEEecCCHHHHH
Confidence 99999999996 678766543
|
|
| >cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=280.56 Aligned_cols=149 Identities=28% Similarity=0.417 Sum_probs=130.8
Q ss_pred EeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEE
Q 004537 153 TDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIG 232 (746)
Q Consensus 153 ~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~ 232 (746)
.||+++| +++.+++++ +++++||+++|+||||||||||+|+|+|.. ++.+|+|.++|.+ ++
T Consensus 4 ~~l~~~~--------~~~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~--~p~~G~i~~~g~~--------i~ 64 (177)
T cd03222 4 PDCVKRY--------GVFFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQL--IPNGDNDEWDGIT--------PV 64 (177)
T ss_pred CCeEEEE--------CCEEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCC--CCCCcEEEECCEE--------EE
Confidence 5788887 356789885 899999999999999999999999999954 3568999999863 78
Q ss_pred EEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHHHHHhh
Q 004537 233 FVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIII 312 (746)
Q Consensus 233 yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~ 312 (746)
|++|+.. ||||||||++|||+|+.
T Consensus 65 ~~~q~~~--------------------------------------------------------LSgGq~qrv~laral~~ 88 (177)
T cd03222 65 YKPQYID--------------------------------------------------------LSGGELQRVAIAAALLR 88 (177)
T ss_pred EEcccCC--------------------------------------------------------CCHHHHHHHHHHHHHhc
Confidence 8888532 99999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCC-CEEEEEecCCChHHHhccCEEEEEeCCeEEEe
Q 004537 313 NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAG-KTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (746)
Q Consensus 313 ~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g-~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~ 377 (746)
+|++++|||||++||+.++..+.+.|+++++++ +|||+++|++. .+.+.||++++|+++-.++.
T Consensus 89 ~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~~~~~~~ 153 (177)
T cd03222 89 NATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLA-VLDYLSDRIHVFEGEPGVYG 153 (177)
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHH-HHHHhCCEEEEEcCCCccce
Confidence 999999999999999999999999999997765 89999999975 46678999999998766544
|
RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-33 Score=355.03 Aligned_cols=197 Identities=27% Similarity=0.438 Sum_probs=159.3
Q ss_pred ccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEecCCcCCCCCCHHHH
Q 004537 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKET 249 (746)
Q Consensus 170 ~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~ 249 (746)
+++|+|+|++|++|++++|+|||||||||||++|+|... +.+|+|.++| .|+||+|++.+++. ||+||
T Consensus 439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~--~~~G~i~~~g---------~iayv~Q~~~l~~~-Ti~eN 506 (1490)
T TIGR01271 439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELE--PSEGKIKHSG---------RISFSPQTSWIMPG-TIKDN 506 (1490)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECC---------EEEEEeCCCccCCc-cHHHH
Confidence 469999999999999999999999999999999999543 5689999998 49999999999975 99999
Q ss_pred HHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 004537 250 LTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDST 329 (746)
Q Consensus 250 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~illLDEPTsgLD~~ 329 (746)
|.|+.... .....+..+....++.++.+ ++..+|.+|.. ...|||||||||+||||++.+|+++||||||+|||+.
T Consensus 507 I~~g~~~~-~~~~~~~~~~~~L~~~l~~l--~~g~~t~vg~~-g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~ 582 (1490)
T TIGR01271 507 IIFGLSYD-EYRYTSVIKACQLEEDIALF--PEKDKTVLGEG-GITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVV 582 (1490)
T ss_pred HHhccccc-hHHHHHHHHHHhHHHHHHhc--cccccccccCc-CCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHH
Confidence 99874211 00000000111123333433 44556778765 5679999999999999999999999999999999999
Q ss_pred HHHHHHHH-HHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHHH
Q 004537 330 TALRIVQM-LQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (746)
Q Consensus 330 ~~~~i~~~-L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 385 (746)
++.++++. ++++. +|+|+|++||++.. ...||+|++|++|++++.|+++++..
T Consensus 583 ~~~~i~~~~l~~~~-~~~tvilvtH~~~~--~~~ad~ii~l~~g~i~~~g~~~~l~~ 636 (1490)
T TIGR01271 583 TEKEIFESCLCKLM-SNKTRILVTSKLEH--LKKADKILLLHEGVCYFYGTFSELQA 636 (1490)
T ss_pred HHHHHHHHHHHHHh-cCCeEEEEeCChHH--HHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999984 67765 48999999999864 45699999999999999999998864
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-33 Score=269.11 Aligned_cols=227 Identities=22% Similarity=0.449 Sum_probs=189.6
Q ss_pred eEEEEeEEEEEeecc-ccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh--
Q 004537 149 YLKFTDVTYKVILKG-MTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~-~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (746)
-++++|+++++.... .-.+....+.+.|||+++.|+.+||+|.||||||||.|+|+|.. ++++|+|++||+++.-
T Consensus 4 LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi--~PTsG~il~n~~~L~~~D 81 (267)
T COG4167 4 LLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMI--EPTSGEILINDHPLHFGD 81 (267)
T ss_pred hhhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhccc--CCCCceEEECCccccccc
Confidence 377888877663221 11123456899999999999999999999999999999999965 3569999999998742
Q ss_pred -hc-cCcEEEEecCCc--CCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCC-ccccccccCccccCCCHHH
Q 004537 226 -SL-KSKIGFVTQDDV--LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVSGGE 300 (746)
Q Consensus 226 -~~-~~~i~yv~Q~~~--l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSGGe 300 (746)
.. .++|-+++||+. +.|.+.+.+-|....++ ..+++.+++.+++.+.++.+||- +.++ -+++.||-||
T Consensus 82 y~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l--~T~~~~~~R~~~i~~TL~~VGL~Pdhan-----~~~~~la~~Q 154 (267)
T COG4167 82 YSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRL--NTDLEPEQRRKQIFETLRMVGLLPDHAN-----YYPHMLAPGQ 154 (267)
T ss_pred hHhhhhheeeeecCCccccChhhhhhhHhcchhhh--cccCChHHHHHHHHHHHHHhccCccccc-----cchhhcCchh
Confidence 23 467999999985 67777787777766543 44677888999999999999984 4444 3567899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecC
Q 004537 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (746)
Q Consensus 301 rqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (746)
||||++||||+.+|+|+|.||...+||...+.+++++.-+|.++ |.+-|.++.+.. .+...+|+|+||++|++++.|+
T Consensus 155 KQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG-~iKHi~D~viVM~EG~vvE~G~ 233 (267)
T COG4167 155 KQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIG-MIKHISDQVLVMHEGEVVERGS 233 (267)
T ss_pred HHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhh-HhhhhcccEEEEecCceeecCC
Confidence 99999999999999999999999999999999999999999764 999999999876 4788999999999999999999
Q ss_pred HHHHHH
Q 004537 380 ASEAMA 385 (746)
Q Consensus 380 ~~~~~~ 385 (746)
+.+++.
T Consensus 234 t~~v~a 239 (267)
T COG4167 234 TADVLA 239 (267)
T ss_pred hhhhhc
Confidence 998863
|
|
| >KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=340.19 Aligned_cols=223 Identities=24% Similarity=0.435 Sum_probs=200.7
Q ss_pred ceEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh--
Q 004537 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (746)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (746)
..+..+|+++.|.. .++ +++++|+.|++||+.+++|||||||||++|+|.|.. ++++|++.++|.++..
T Consensus 563 ~~~~~~~L~k~y~~------~~~-Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~--~~t~G~a~i~g~~i~~~~ 633 (885)
T KOG0059|consen 563 SALVLNNLSKVYGG------KDG-AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGET--KPTSGEALIKGHDITVST 633 (885)
T ss_pred ceEEEcceeeeecc------hhh-hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCc--cCCcceEEEecCcccccc
Confidence 35889999998832 122 999999999999999999999999999999999943 4569999999998853
Q ss_pred ---hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHH
Q 004537 226 ---SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (746)
Q Consensus 226 ---~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerq 302 (746)
+.++.+||+||+|.+++.+|.||++.+.++++ .+++.+..+.++..++.++|.+..|+.+ +.+|||+||
T Consensus 634 ~~~~~~~~iGyCPQ~d~l~~~lT~rEhL~~~arlr---G~~~~di~~~v~~ll~~~~L~~~~~~~~-----~~ySgG~kR 705 (885)
T KOG0059|consen 634 DFQQVRKQLGYCPQFDALWEELTGREHLEFYARLR---GLPRSDIGSAIEKLLRLVGLGPYANKQV-----RTYSGGNKR 705 (885)
T ss_pred chhhhhhhcccCCchhhhhhhccHHHHHHHHHHHc---CCChhHHHHHHHHHHHHcCChhhhccch-----hhCCCcchh
Confidence 25788999999999999999999999999887 3556667777999999999999999875 579999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHH
Q 004537 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (746)
Q Consensus 303 Rv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~ 382 (746)
|+++|.||+.+|++++|||||+|+||.+++.+.+.++++.+.|+.||+|||-. +|...+|||+.+|.+|++.-.|++++
T Consensus 706 kLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsM-eE~EaLCtR~aImv~G~l~ciGs~q~ 784 (885)
T KOG0059|consen 706 RLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSM-EEAEALCTRTAIMVIGQLRCIGSPQE 784 (885)
T ss_pred hHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHHhhhhheeecCeeEEecChHH
Confidence 99999999999999999999999999999999999999998888999999996 46889999999999999999999999
Q ss_pred HHHHHH
Q 004537 383 AMAYFS 388 (746)
Q Consensus 383 ~~~~f~ 388 (746)
+...|.
T Consensus 785 LKsrfG 790 (885)
T KOG0059|consen 785 LKSRYG 790 (885)
T ss_pred HHhhcC
Confidence 998875
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-33 Score=325.60 Aligned_cols=208 Identities=24% Similarity=0.377 Sum_probs=161.9
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCChhcc
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~ 228 (746)
.|+++||+++| +++++|+||||+|++|++++|+||||||||||||+|+|.. ++++|+|.++|..
T Consensus 3 ~l~i~~ls~~~--------~~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~--~p~~G~I~~~~~~------ 66 (635)
T PRK11147 3 LISIHGAWLSF--------SDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEV--LLDDGRIIYEQDL------ 66 (635)
T ss_pred EEEEeeEEEEe--------CCceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCC--CCCCeEEEeCCCC------
Confidence 58999999998 3467999999999999999999999999999999999954 3568999998732
Q ss_pred CcEEEEecCCcCCCCCCHHHHHHHHHh-----------c--cCCC------------------CCcHHHHHHHHHHHHHH
Q 004537 229 SKIGFVTQDDVLFPHLTVKETLTYAAL-----------L--RLPN------------------TLTKQQKEKRAIDVINE 277 (746)
Q Consensus 229 ~~i~yv~Q~~~l~~~lTV~E~l~~~~~-----------~--~~~~------------------~~~~~~~~~~v~~~l~~ 277 (746)
.++|++|++......+|.+++..+.. + .... .........++.++++.
T Consensus 67 -~~~~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 145 (635)
T PRK11147 67 -IVARLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQ 145 (635)
T ss_pred -EEEEeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHh
Confidence 26788876543333466665421100 0 0000 00001124568889999
Q ss_pred cCCCccccccccCccccCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCh
Q 004537 278 LGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSS 357 (746)
Q Consensus 278 lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~ 357 (746)
+|+.. +. .+..|||||||||+|||+|+.+|+||||||||++||+.+...+.+.|+++ +.|||++|||+.
T Consensus 146 lgl~~--~~-----~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~---~~tvlivsHd~~- 214 (635)
T PRK11147 146 LGLDP--DA-----ALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTF---QGSIIFISHDRS- 214 (635)
T ss_pred CCCCC--CC-----chhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhC---CCEEEEEeCCHH-
Confidence 99963 33 45689999999999999999999999999999999999999999999987 359999999965
Q ss_pred HHHhccCEEEEEeCCeEE-EecCHHHHH
Q 004537 358 RLFHKFDKLILLGKGSLL-YFGKASEAM 384 (746)
Q Consensus 358 ~i~~~~D~i~vL~~G~iv-~~G~~~~~~ 384 (746)
.+.+.||+|++|++|+++ +.|+.++.+
T Consensus 215 ~l~~~~d~i~~L~~G~i~~~~g~~~~~~ 242 (635)
T PRK11147 215 FIRNMATRIVDLDRGKLVSYPGNYDQYL 242 (635)
T ss_pred HHHHhcCeEEEEECCEEEEecCCHHHHH
Confidence 477889999999999997 568776543
|
|
| >cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-32 Score=267.58 Aligned_cols=152 Identities=37% Similarity=0.729 Sum_probs=135.6
Q ss_pred EEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh----hc
Q 004537 152 FTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SL 227 (746)
Q Consensus 152 ~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~----~~ 227 (746)
++|++++| .++.+|+++|+++++|++++|+||||||||||+++|+|.+. +.+|+|+++|.++.. ..
T Consensus 2 ~~~~~~~~--------~~~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~--~~~G~i~~~~~~~~~~~~~~~ 71 (157)
T cd00267 2 IENLSFRY--------GGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLK--PTSGEILIDGKDIAKLPLEEL 71 (157)
T ss_pred eEEEEEEe--------CCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCccEEEECCEEcccCCHHHH
Confidence 67898887 23469999999999999999999999999999999999643 468999999987643 34
Q ss_pred cCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHH
Q 004537 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (746)
Q Consensus 228 ~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA 307 (746)
++.++|++| |||||+||++||
T Consensus 72 ~~~i~~~~q-----------------------------------------------------------lS~G~~~r~~l~ 92 (157)
T cd00267 72 RRRIGYVPQ-----------------------------------------------------------LSGGQRQRVALA 92 (157)
T ss_pred HhceEEEee-----------------------------------------------------------CCHHHHHHHHHH
Confidence 567999998 999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCe
Q 004537 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGS 373 (746)
Q Consensus 308 ~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~ 373 (746)
|+++.+|++++|||||+|||+.++..+.+.|+++.+.++|+|+++|++. .+...||++++|++|+
T Consensus 93 ~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 93 RALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPE-LAELAADRVIVLKDGK 157 (157)
T ss_pred HHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeCcC
Confidence 9999999999999999999999999999999998776799999999975 4667789999999875
|
The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-32 Score=332.17 Aligned_cols=207 Identities=25% Similarity=0.404 Sum_probs=174.0
Q ss_pred ceEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCChhc
Q 004537 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (746)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~ 227 (746)
..++++|.++++.. ....+.|+|||++|++|+++||+||-|||||+||.+|.|.+. ..+|+|.++|.
T Consensus 517 ~~i~i~~~sfsW~~-----~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~--~~sG~v~v~gs------ 583 (1381)
T KOG0054|consen 517 NAIEIKNGSFSWDS-----ESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMP--KLSGSVAVNGS------ 583 (1381)
T ss_pred ceEEEeeeeEecCC-----CCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcc--cccceEEEcCe------
Confidence 36999999999843 234459999999999999999999999999999999999663 56899999985
Q ss_pred cCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcC-------CCccccccccCccccCCCHHH
Q 004537 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG-------LERCQDTMIGGSFVRGVSGGE 300 (746)
Q Consensus 228 ~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~~~vg~~~~~~LSGGe 300 (746)
++||+|++.++. .||||||.|+... . +++.+++++... |+++-.|.||++++ +|||||
T Consensus 584 ---iaYv~Q~pWI~n-gTvreNILFG~~~------d----~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGi-nLSGGQ 648 (1381)
T KOG0054|consen 584 ---VAYVPQQPWIQN-GTVRENILFGSPY------D----EERYDKVIKACALKKDLEILPFGDLTEIGERGI-NLSGGQ 648 (1381)
T ss_pred ---EEEeccccHhhC-CcHHHhhhcCccc------c----HHHHHHHHHHccCHhHHhhcCCCCcceecCCcc-CCcHhH
Confidence 899999999996 5999999998432 2 233334444333 34566788987765 599999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCH
Q 004537 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380 (746)
Q Consensus 301 rqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~ 380 (746)
|||+++|||+.+|++|++||.|.|++|+++..+|.+..-+-.-++||+|++|||.. ..+.+|+|++|++|+|++.|+.
T Consensus 649 KqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~--~L~~ad~Iivl~~G~I~~~Gty 726 (1381)
T KOG0054|consen 649 KQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQ--FLPHADQIIVLKDGKIVESGTY 726 (1381)
T ss_pred HHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchh--hhhhCCEEEEecCCeEecccCH
Confidence 99999999999999999999999999999999988665544445899999999864 5788999999999999999999
Q ss_pred HHHH
Q 004537 381 SEAM 384 (746)
Q Consensus 381 ~~~~ 384 (746)
+|++
T Consensus 727 ~el~ 730 (1381)
T KOG0054|consen 727 EELL 730 (1381)
T ss_pred HHHH
Confidence 9998
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-32 Score=318.11 Aligned_cols=189 Identities=29% Similarity=0.405 Sum_probs=155.3
Q ss_pred eEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEE-----------ECCEe
Q 004537 154 DVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSIT-----------YNDHP 222 (746)
Q Consensus 154 nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~-----------~~G~~ 222 (746)
+++++|. .+..+|++++ .+++||+++|+||||||||||+|+|+|.+. +.+|+|. ++|.+
T Consensus 78 ~~~~~yg-------~~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~--p~~G~i~~~~~~~~~~~~~~G~~ 147 (590)
T PRK13409 78 EPVHRYG-------VNGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELI--PNLGDYEEEPSWDEVLKRFRGTE 147 (590)
T ss_pred CceEEec-------CCceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCcc--CCCccccCCCcHHHHHHHhCChH
Confidence 3666661 2246999999 999999999999999999999999999543 4589998 99988
Q ss_pred CChh---c---cCcEEEEecC----CcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCcc
Q 004537 223 YSKS---L---KSKIGFVTQD----DVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSF 292 (746)
Q Consensus 223 ~~~~---~---~~~i~yv~Q~----~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~ 292 (746)
+... . +.++++++|. +.++. .||+|++... +..++++++++.++|.+..|+.+
T Consensus 148 l~~~~~~~~~~~~~~~~~~q~~~~~p~~~~-~tv~e~l~~~------------~~~~~~~~~l~~l~l~~~~~~~~---- 210 (590)
T PRK13409 148 LQNYFKKLYNGEIKVVHKPQYVDLIPKVFK-GKVRELLKKV------------DERGKLDEVVERLGLENILDRDI---- 210 (590)
T ss_pred HHHHHHHHhccCcceeecccchhhhhhhhc-chHHHHHHhh------------hHHHHHHHHHHHcCCchhhcCCh----
Confidence 7431 1 2345666664 44443 3999998631 12356889999999987777654
Q ss_pred ccCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCC
Q 004537 293 VRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKG 372 (746)
Q Consensus 293 ~~~LSGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G 372 (746)
.+|||||||||+||++|+.+|++|||||||++||+.++..+.+.|+++++ |+|||+++|++. .+...+|+|++|+++
T Consensus 211 -~~LSgGe~qrv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~-g~tvIivsHd~~-~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 211 -SELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAE-GKYVLVVEHDLA-VLDYLADNVHIAYGE 287 (590)
T ss_pred -hhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCEEEEEeCCHH-HHHHhCCEEEEEeCC
Confidence 58999999999999999999999999999999999999999999999988 999999999975 577889999999863
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=7.8e-32 Score=341.92 Aligned_cols=199 Identities=27% Similarity=0.374 Sum_probs=155.6
Q ss_pred cccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEecCCcCCCCCCHHH
Q 004537 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKE 248 (746)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTV~E 248 (746)
++++|+|+|++|++|++++|+|||||||||||++|+|... +.+|+|.++ ++|+||+|++.+++ .||+|
T Consensus 672 ~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~--~~~G~i~~~---------~~i~yv~Q~~~l~~-~Tv~e 739 (1560)
T PTZ00243 672 PKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFE--ISEGRVWAE---------RSIAYVPQQAWIMN-ATVRG 739 (1560)
T ss_pred CceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEEC---------CeEEEEeCCCccCC-CcHHH
Confidence 4569999999999999999999999999999999999643 458999863 46999999999885 69999
Q ss_pred HHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 004537 249 TLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDS 328 (746)
Q Consensus 249 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~illLDEPTsgLD~ 328 (746)
||.|+.... .+...+..+...+++.++.+ ++..++.+|. ....|||||||||+|||||+.+|++++|||||++||+
T Consensus 740 nI~~~~~~~-~~~~~~~~~~~~l~~~l~~l--~~g~~t~i~~-~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~ 815 (1560)
T PTZ00243 740 NILFFDEED-AARLADAVRVSQLEADLAQL--GGGLETEIGE-KGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDA 815 (1560)
T ss_pred HHHcCChhh-HHHHHHHHHHhhhHHHHHHh--hccchHHhcC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCH
Confidence 999852110 00000111112234445544 3334566654 3567999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHHH
Q 004537 329 TTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (746)
Q Consensus 329 ~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 385 (746)
.++..+++.+.....+|+|+|++||++.. .+.||+|++|++|++++.|+++++++
T Consensus 816 ~~~~~i~~~~~~~~~~~~TvIlvTH~~~~--~~~ad~ii~l~~G~i~~~G~~~~l~~ 870 (1560)
T PTZ00243 816 HVGERVVEECFLGALAGKTRVLATHQVHV--VPRADYVVALGDGRVEFSGSSADFMR 870 (1560)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEEeCCHHH--HHhCCEEEEEECCEEEEecCHHHHHh
Confidence 99999887543222358999999999753 47799999999999999999998753
|
|
| >COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.6e-32 Score=256.99 Aligned_cols=214 Identities=29% Similarity=0.473 Sum_probs=169.3
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEe---CC-
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP---YS- 224 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~---~~- 224 (746)
-++++++|+.| +...--+||||++.|||+.+|+|+|||||||||++|++|+. ++.|+|.|.-.+ ..
T Consensus 6 LL~V~~lsk~Y--------g~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~--p~~G~v~Y~~r~~~~~dl 75 (258)
T COG4107 6 LLSVSGLSKLY--------GPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLT--PDAGTVTYRMRDGQPRDL 75 (258)
T ss_pred ceeehhhhhhh--------CCCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccC--CCCCeEEEEcCCCCchhH
Confidence 58899999988 44567899999999999999999999999999999999874 568999996532 21
Q ss_pred ----h-h----ccCcEEEEecCCc--CCCCC----CHHHHHH-HHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccc
Q 004537 225 ----K-S----LKSKIGFVTQDDV--LFPHL----TVKETLT-YAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMI 288 (746)
Q Consensus 225 ----~-~----~~~~i~yv~Q~~~--l~~~l----TV~E~l~-~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 288 (746)
+ + .|..-|+|.|+|. +-... .|.|-+. .+++ .....++.+.++++++.++..+ +
T Consensus 76 ~~msEaeRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~R-------HYG~iR~~a~~WL~~VEI~~~R---i 145 (258)
T COG4107 76 YTMSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGAR-------HYGNIRAEAQDWLEEVEIDLDR---I 145 (258)
T ss_pred hhhchHHHHHHhhhccceeecCccccceeeeccCCccchhHHhhhhh-------hhhhHHHHHHHHHHhcccCccc---c
Confidence 1 1 2345799999874 32222 3333332 1111 1233456678899998876432 2
Q ss_pred cCccccCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEE
Q 004537 289 GGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLI 367 (746)
Q Consensus 289 g~~~~~~LSGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~ 367 (746)
+..++.+|||++||+.|||.|++.|+++|+||||-|||...+..++++++.+..+ |..++++|||+.- +.-++||.+
T Consensus 146 -DD~PrtFSGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~V-arLla~rlm 223 (258)
T COG4107 146 -DDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAV-ARLLADRLM 223 (258)
T ss_pred -cCcccccchHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHH-HHHhhhcce
Confidence 2457899999999999999999999999999999999999999999999999765 8999999999753 445689999
Q ss_pred EEeCCeEEEecCHHHHH
Q 004537 368 LLGKGSLLYFGKASEAM 384 (746)
Q Consensus 368 vL~~G~iv~~G~~~~~~ 384 (746)
+|++|++++.|-.+.++
T Consensus 224 vmk~g~vve~GLTDrvL 240 (258)
T COG4107 224 VMKQGQVVESGLTDRVL 240 (258)
T ss_pred eecCCCEeccccccccc
Confidence 99999999999888775
|
|
| >COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.6e-32 Score=260.87 Aligned_cols=187 Identities=25% Similarity=0.431 Sum_probs=160.9
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---h
Q 004537 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---S 226 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~---~ 226 (746)
++.+|++.. +++..++.++||++.+||++-|.||||||||||||+|+|... +.+|+|.++|.++.. .
T Consensus 3 L~a~~L~~~--------R~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~--p~~G~v~~~~~~i~~~~~~ 72 (209)
T COG4133 3 LEAENLSCE--------RGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLR--PDAGEVYWQGEPIQNVRES 72 (209)
T ss_pred chhhhhhhc--------cCcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccC--CCCCeEEecCCCCccchhh
Confidence 456667653 367789999999999999999999999999999999999653 458999999998864 2
Q ss_pred ccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHH
Q 004537 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (746)
Q Consensus 227 ~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~I 306 (746)
.++.+-|+--.+-+=+.+||.|||.|....... ...+.+.+.++.+||....|.++ +.||-||||||+|
T Consensus 73 ~~~~l~yLGH~~giK~eLTa~ENL~F~~~~~~~------~~~~~i~~Al~~vgL~g~~dlp~-----~~LSAGQqRRvAl 141 (209)
T COG4133 73 YHQALLYLGHQPGIKTELTALENLHFWQRFHGS------GNAATIWEALAQVGLAGLEDLPV-----GQLSAGQQRRVAL 141 (209)
T ss_pred HHHHHHHhhccccccchhhHHHHHHHHHHHhCC------CchhhHHHHHHHcCcccccccch-----hhcchhHHHHHHH
Confidence 446678888888888899999999998664321 12356788999999999888766 4899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCh
Q 004537 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSS 357 (746)
Q Consensus 307 A~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~ 357 (746)
||-+++.+++.|||||+++||......+-..+..-+.+|-.||.+||||..
T Consensus 142 ArL~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~ 192 (209)
T COG4133 142 ARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPLP 192 (209)
T ss_pred HHHHcCCCCceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCccC
Confidence 999999999999999999999999999999999888888899999999865
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.7e-31 Score=302.13 Aligned_cols=208 Identities=29% Similarity=0.459 Sum_probs=169.5
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCChhcc
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~ 228 (746)
.|+++|++++| +++++++|+|+++.+|+.++|||+||||||||||+|+|... +.+|+|...+.
T Consensus 3 ~i~~~~ls~~~--------g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~--~~~G~i~~~~~------- 65 (530)
T COG0488 3 MITLENLSLAY--------GDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELE--PDSGEVTRPKG------- 65 (530)
T ss_pred eEEEeeeEEee--------CCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCc--CCCCeEeecCC-------
Confidence 58999999998 57889999999999999999999999999999999999653 56899987642
Q ss_pred CcEEEEecCCcCCCCCCHHHHHHHHHhcc-------------CCCC--------------CcHHHHHHHHHHHHHHcCCC
Q 004537 229 SKIGFVTQDDVLFPHLTVKETLTYAALLR-------------LPNT--------------LTKQQKEKRAIDVINELGLE 281 (746)
Q Consensus 229 ~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~-------------~~~~--------------~~~~~~~~~v~~~l~~lgL~ 281 (746)
-+++|++|++.+.+..||.+.+.-+..-. .++. +..-..+.++..++..+|++
T Consensus 66 ~~v~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~ 145 (530)
T COG0488 66 LRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFP 145 (530)
T ss_pred ceEEEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCC
Confidence 35999999999999899999887653210 0000 00001135677888888888
Q ss_pred ccccccccCccccCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHh
Q 004537 282 RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFH 361 (746)
Q Consensus 282 ~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~ 361 (746)
+. ++.+ .+||||||.||+||++|+.+|++|+|||||+.||..+..-+-+.|++. .| |+|+|||| ...+-+
T Consensus 146 ~~-~~~~-----~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~--~g-tviiVSHD-R~FLd~ 215 (530)
T COG0488 146 DE-DRPV-----SSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY--PG-TVIVVSHD-RYFLDN 215 (530)
T ss_pred cc-cCch-----hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC--CC-cEEEEeCC-HHHHHH
Confidence 76 5544 589999999999999999999999999999999999999988888854 47 99999999 566788
Q ss_pred ccCEEEEEeCCeE-EEecCHHHH
Q 004537 362 KFDKLILLGKGSL-LYFGKASEA 383 (746)
Q Consensus 362 ~~D~i~vL~~G~i-v~~G~~~~~ 383 (746)
.|++|+-++.|++ .|.|..+.-
T Consensus 216 V~t~I~~ld~g~l~~y~Gny~~~ 238 (530)
T COG0488 216 VATHILELDRGKLTPYKGNYSSY 238 (530)
T ss_pred HhhheEEecCCceeEecCCHHHH
Confidence 9999999999976 566765543
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-31 Score=317.47 Aligned_cols=219 Identities=22% Similarity=0.282 Sum_probs=157.3
Q ss_pred CceEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCC-CCCccEEEECCEeC--
Q 004537 147 PIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-PTVGGSITYNDHPY-- 223 (746)
Q Consensus 147 ~~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~-~~~~G~I~~~G~~~-- 223 (746)
...|+++|++++| +++.+|+|+||+|++|+.+||+|||||||||||++|+|+... .+.+|+|.+.++..
T Consensus 175 ~~~I~i~nls~~y--------~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g 246 (718)
T PLN03073 175 IKDIHMENFSISV--------GGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVG 246 (718)
T ss_pred ceeEEEceEEEEe--------CCCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCC
Confidence 3469999999999 345699999999999999999999999999999999986421 23468887644321
Q ss_pred ---Ch-------------hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCC---------------CcHHHHHHHHH
Q 004537 224 ---SK-------------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNT---------------LTKQQKEKRAI 272 (746)
Q Consensus 224 ---~~-------------~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~---------------~~~~~~~~~v~ 272 (746)
+. .+++.++|++|++.+... ++.++.........+.. ......++++.
T Consensus 247 ~~~t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~ 325 (718)
T PLN03073 247 DDTTALQCVLNTDIERTQLLEEEAQLVAQQRELEFE-TETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAA 325 (718)
T ss_pred CCCCHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhc-ccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHH
Confidence 10 012335666665443221 22222111000000000 00012344566
Q ss_pred HHHHHcCCC-ccccccccCccccCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEE
Q 004537 273 DVINELGLE-RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTT 351 (746)
Q Consensus 273 ~~l~~lgL~-~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~ 351 (746)
+++..+|+. +..++ .+..|||||||||+||++|+.+|++|||||||++||+.+...+.+.|+++ +.|||++
T Consensus 326 ~~L~~lgl~~~~~~~-----~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~---~~tviiv 397 (718)
T PLN03073 326 SILAGLSFTPEMQVK-----ATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW---PKTFIVV 397 (718)
T ss_pred HHHHHCCCChHHHhC-----chhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc---CCEEEEE
Confidence 778888885 33343 34689999999999999999999999999999999999999999999886 6799999
Q ss_pred ecCCChHHHhccCEEEEEeCCeEE-EecCHHHH
Q 004537 352 IHQPSSRLFHKFDKLILLGKGSLL-YFGKASEA 383 (746)
Q Consensus 352 ~H~~~~~i~~~~D~i~vL~~G~iv-~~G~~~~~ 383 (746)
+|+.. .+...||+|++|++|+++ |.|+.++.
T Consensus 398 sHd~~-~l~~~~d~i~~l~~g~i~~~~g~~~~~ 429 (718)
T PLN03073 398 SHARE-FLNTVVTDILHLHGQKLVTYKGDYDTF 429 (718)
T ss_pred ECCHH-HHHHhCCEEEEEECCEEEEeCCCHHHH
Confidence 99964 577889999999999996 77876654
|
|
| >COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-30 Score=246.94 Aligned_cols=212 Identities=26% Similarity=0.402 Sum_probs=170.6
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEe--CC--
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP--YS-- 224 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~--~~-- 224 (746)
.|..+||++++.... ..+-.-++|+|+||+++.||++++=||||+|||||||+|-|.. . +++|+|++.-.. ++
T Consensus 4 ~l~v~~~~KtFtlH~-q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY-~-~d~G~I~v~H~g~~vdl~ 80 (235)
T COG4778 4 PLNVSNVSKTFTLHQ-QGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANY-L-PDEGQILVRHEGEWVDLV 80 (235)
T ss_pred eeeeecchhheEeee-cCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhcc-C-CCCceEEEEeCcchhhhh
Confidence 478899988775321 1122357999999999999999999999999999999999854 3 568999985432 11
Q ss_pred ----h---h-ccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCC
Q 004537 225 ----K---S-LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGV 296 (746)
Q Consensus 225 ----~---~-~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~L 296 (746)
. . .++.||||.|.-...|..+..|.+.-.+.- ...+.+..++++.+++.+|++++....+ .+.++
T Consensus 81 ~a~pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~---~gv~~~~a~~~a~~Ll~rLnlperLW~L----aPaTF 153 (235)
T COG4778 81 TAEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLA---RGVPREVARAKAADLLTRLNLPERLWSL----APATF 153 (235)
T ss_pred ccChHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHH---cCCCHHHHHHHHHHHHHHcCCCHHHhcC----CCccc
Confidence 1 1 345699999988778877777766544322 3466777888899999999998766654 35789
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeC
Q 004537 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 371 (746)
Q Consensus 297 SGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~ 371 (746)
||||+|||.|||.++.|-+||+|||||+.||..++.-++++|++-+.+|..+|=+-||- +.-...+||++-+..
T Consensus 154 SGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDe-evre~vadR~~~~~~ 227 (235)
T COG4778 154 SGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDE-EVREAVADRLLDVSA 227 (235)
T ss_pred CCchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeeccH-HHHHHHhhheeeccc
Confidence 99999999999999999999999999999999999999999999877899999999993 334567899988764
|
|
| >cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-29 Score=262.59 Aligned_cols=191 Identities=23% Similarity=0.371 Sum_probs=136.1
Q ss_pred ccccceeceEEEEeCCeEEEEECCCCccHHHHH-HHHHcCCCCCCCccEEEEC------------CEeCCh--hcc-CcE
Q 004537 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLL-NLLSGRLMEPTVGGSITYN------------DHPYSK--SLK-SKI 231 (746)
Q Consensus 168 ~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL-~~L~G~~~~~~~~G~I~~~------------G~~~~~--~~~-~~i 231 (746)
.+..+|+||||+|++||+++|+||||||||||+ ..|.. .|++.+. .....+ ..+ ...
T Consensus 6 ~~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~-------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (226)
T cd03270 6 AREHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYA-------EGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSP 78 (226)
T ss_pred chhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHH-------HHHHHHhhcccchhhhhhcccCccccccccCCCc
Confidence 356799999999999999999999999999995 44431 1222110 000000 111 224
Q ss_pred EEEecCCc--CCCCCCHH---HHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCc-cccccccCccccCCCHHHHHHHH
Q 004537 232 GFVTQDDV--LFPHLTVK---ETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVRGVSGGERKRVC 305 (746)
Q Consensus 232 ~yv~Q~~~--l~~~lTV~---E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSGGerqRv~ 305 (746)
++..|++. +.+..+|. |...+...+. ......++ .+.++.++|.+ ..+. .+.+||||||||++
T Consensus 79 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~~~-~~~l~~~~l~~~~~~~-----~~~~LSgG~~qrv~ 147 (226)
T cd03270 79 AIAIDQKTTSRNPRSTVGTVTEIYDYLRLLF-----ARVGIRER-LGFLVDVGLGYLTLSR-----SAPTLSGGEAQRIR 147 (226)
T ss_pred eEEecCCCCCCCCCccHHHHHHHHHHHHHHh-----hhhhHHHH-HHHHHHCCCCcccccC-----ccCcCCHHHHHHHH
Confidence 45555443 23444544 3222221111 11112223 56789999975 3443 45789999999999
Q ss_pred HHHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEE------eCCeEEEe
Q 004537 306 IGNEIIINP--SLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL------GKGSLLYF 377 (746)
Q Consensus 306 IA~aL~~~p--~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL------~~G~iv~~ 377 (746)
|||+|+.+| ++|||||||+|||+.++..+.+.|++++++|.|+|++||++. .+ +.||++++| ++|+|+++
T Consensus 148 laral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~-~~-~~~d~i~~l~~~~~~~~G~iv~~ 225 (226)
T cd03270 148 LATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDED-TI-RAADHVIDIGPGAGVHGGEIVAQ 225 (226)
T ss_pred HHHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHH-HH-HhCCEEEEeCCCccccCCEEEec
Confidence 999999998 599999999999999999999999999878999999999975 34 689999999 99999998
Q ss_pred c
Q 004537 378 G 378 (746)
Q Consensus 378 G 378 (746)
|
T Consensus 226 g 226 (226)
T cd03270 226 G 226 (226)
T ss_pred C
Confidence 7
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.3e-30 Score=243.70 Aligned_cols=133 Identities=44% Similarity=0.768 Sum_probs=117.9
Q ss_pred eeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh----hccCcEEEEecCCcCCCCCCHHH
Q 004537 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHLTVKE 248 (746)
Q Consensus 173 L~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~----~~~~~i~yv~Q~~~l~~~lTV~E 248 (746)
|+|||+++++|++++|+|+||||||||+++|+|... +.+|+|.++|.++.. ..++.++|++|++.+++.+||+|
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~--~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~ 78 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLP--PDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVRE 78 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSH--ESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHH
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeeccccc--cccccccccccccccccccccccccccccccccccccccccc
Confidence 799999999999999999999999999999999542 468999999999864 35788999999999999999999
Q ss_pred HHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 004537 249 TLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTS 324 (746)
Q Consensus 249 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~illLDEPTs 324 (746)
| ...++++++++.+++.+..++.++.. ...|||||||||+||++|+.+|++++|||||+
T Consensus 79 ~----------------~~~~~~~~~l~~l~~~~~~~~~~~~~-~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 79 N----------------ESDERIEEVLKKLGLEDLLDRKIGQR-ASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp H----------------HHHHHHHHHHHHTTHGGGTGSBGTSC-GGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred c----------------cccccccccccccccccccccccccc-cchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 9 23455888999999988778777543 47899999999999999999999999999996
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D .... |
| >cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-29 Score=263.87 Aligned_cols=195 Identities=27% Similarity=0.410 Sum_probs=152.8
Q ss_pred ccceeceEEEEeCCeEEEEECCCCccHHHHHHHHH-----cCCCC----C----------CCccEEEECCEeCChhccC-
Q 004537 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLS-----GRLME----P----------TVGGSITYNDHPYSKSLKS- 229 (746)
Q Consensus 170 ~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~-----G~~~~----~----------~~~G~I~~~G~~~~~~~~~- 229 (746)
..-|+|||.+|+.|++++|.|+||||||||++.+. ..+.. + ...--|.+|..|+....|.
T Consensus 8 ~~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~ 87 (261)
T cd03271 8 ENNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSN 87 (261)
T ss_pred hhcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCc
Confidence 45799999999999999999999999999998552 11110 0 0112477787776421111
Q ss_pred -----------------------------cEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCC
Q 004537 230 -----------------------------KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL 280 (746)
Q Consensus 230 -----------------------------~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL 280 (746)
.+.|..++......+||.|++.|..... ..+++.+.++.+||
T Consensus 88 ~~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~---------~~~~~~~~L~~vgL 158 (261)
T cd03271 88 PATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIP---------KIARKLQTLCDVGL 158 (261)
T ss_pred HHHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhh---------hHHHHHHHHHHcCC
Confidence 2456666655567899999999875431 12456789999999
Q ss_pred Cc-cccccccCccccCCCHHHHHHHHHHHHHhhC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCC
Q 004537 281 ER-CQDTMIGGSFVRGVSGGERKRVCIGNEIIIN---PSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPS 356 (746)
Q Consensus 281 ~~-~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~---p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~ 356 (746)
.+ ..+. .+..||||||||+.||++|+.+ |++++|||||+|||+.....+.+.|+++.++|.|||+++|++.
T Consensus 159 ~~l~l~~-----~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~ 233 (261)
T cd03271 159 GYIKLGQ-----PATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLD 233 (261)
T ss_pred chhhhcC-----ccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 76 2443 3468999999999999999996 7999999999999999999999999999888999999999975
Q ss_pred hHHHhccCEEEEE------eCCeEEEecCH
Q 004537 357 SRLFHKFDKLILL------GKGSLLYFGKA 380 (746)
Q Consensus 357 ~~i~~~~D~i~vL------~~G~iv~~G~~ 380 (746)
. .+.||+++.| ++|++++.|++
T Consensus 234 ~--i~~aD~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 234 V--IKCADWIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred H--HHhCCEEEEecCCcCCCCCEEEEeCCC
Confidence 3 4679999999 79999999974
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.1e-28 Score=268.12 Aligned_cols=213 Identities=23% Similarity=0.443 Sum_probs=178.1
Q ss_pred CceEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh-
Q 004537 147 PIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK- 225 (746)
Q Consensus 147 ~~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~- 225 (746)
++.++++|++.. ..++|+||++++||+++|-|-=|||+|-|+++|.|. .+..+|+|.+||+++..
T Consensus 261 ~~~l~v~~l~~~------------~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~--~~~~~G~i~l~G~~v~~~ 326 (500)
T COG1129 261 EPVLEVRNLSGG------------GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGA--RPASSGEILLDGKPVRIR 326 (500)
T ss_pred CcEEEEecCCCC------------CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCC--CcCCCceEEECCEEccCC
Confidence 345788877642 258999999999999999999999999999999993 34568999999998742
Q ss_pred ----hccCcEEEEecC---CcCCCCCCHHHHHHHHHhccCC-C-CCcHHHHHHHHHHHHHHcCCCc-cccccccCccccC
Q 004537 226 ----SLKSKIGFVTQD---DVLFPHLTVKETLTYAALLRLP-N-TLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVRG 295 (746)
Q Consensus 226 ----~~~~~i~yv~Q~---~~l~~~lTV~E~l~~~~~~~~~-~-~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~ 295 (746)
..+..|+|||.| .-++..++|++|+.++...+.. . -++....++.+++.++.+++.. ..+. .+..
T Consensus 327 sp~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~-----~v~~ 401 (500)
T COG1129 327 SPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQ-----PIGT 401 (500)
T ss_pred CHHHHHHcCCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccc-----hhhc
Confidence 356789999997 4578889999999988332221 1 2556666677889999998852 2223 3568
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEE
Q 004537 296 VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLL 375 (746)
Q Consensus 296 LSGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv 375 (746)
||||.+|||.|||.|..+|++|||||||.|.|.-++.+|.++|++++++|++||++|.++ +|+..+||||+||++|+++
T Consensus 402 LSGGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSEl-pEll~~~DRIlVm~~Gri~ 480 (500)
T COG1129 402 LSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSEL-PELLGLSDRILVMREGRIV 480 (500)
T ss_pred CCchhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCCh-HHHHhhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999999999999999996 4789999999999999998
Q ss_pred EecC
Q 004537 376 YFGK 379 (746)
Q Consensus 376 ~~G~ 379 (746)
..=+
T Consensus 481 ~e~~ 484 (500)
T COG1129 481 GELD 484 (500)
T ss_pred EEec
Confidence 7433
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.6e-28 Score=275.73 Aligned_cols=205 Identities=28% Similarity=0.454 Sum_probs=166.7
Q ss_pred CceEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCChh
Q 004537 147 PIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS 226 (746)
Q Consensus 147 ~~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~ 226 (746)
...++++|+++.|. +++.+++++||.|.+|+.+||+||||+|||||||+|+|... +.+|+|.+.-.
T Consensus 319 ~~vl~~~~~~~~y~-------~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~--~~~G~v~~g~~----- 384 (530)
T COG0488 319 KLVLEFENVSKGYD-------GGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELG--PLSGTVKVGET----- 384 (530)
T ss_pred CeeEEEeccccccC-------CCceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcc--cCCceEEeCCc-----
Confidence 34699999999982 23689999999999999999999999999999999999543 44899987532
Q ss_pred ccCcEEEEecCC-cCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHH
Q 004537 227 LKSKIGFVTQDD-VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (746)
Q Consensus 227 ~~~~i~yv~Q~~-~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~ 305 (746)
-++||..|+. .+.+..|+.|++.-.. |. ..+..+...+..++++...- ...++.||||||.||.
T Consensus 385 --v~igyf~Q~~~~l~~~~t~~d~l~~~~----~~-----~~e~~~r~~L~~f~F~~~~~----~~~v~~LSGGEk~Rl~ 449 (530)
T COG0488 385 --VKIGYFDQHRDELDPDKTVLEELSEGF----PD-----GDEQEVRAYLGRFGFTGEDQ----EKPVGVLSGGEKARLL 449 (530)
T ss_pred --eEEEEEEehhhhcCccCcHHHHHHhhC----cc-----ccHHHHHHHHHHcCCChHHH----hCchhhcCHhHHHHHH
Confidence 3599999986 4557789999987532 11 11566788999999974322 1345689999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEe-cCHHHHH
Q 004537 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF-GKASEAM 384 (746)
Q Consensus 306 IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~-G~~~~~~ 384 (746)
+|+.++.+|.+|||||||+.||..+...+.+.|.+.. | |||+||||. ..+-+.|++++.+.+ ++..+ |..++..
T Consensus 450 La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f~--G-tvl~VSHDr-~Fl~~va~~i~~~~~-~~~~~~g~y~~y~ 524 (530)
T COG0488 450 LAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDFE--G-TVLLVSHDR-YFLDRVATRIWLVED-KVEEFEGGYEDYL 524 (530)
T ss_pred HHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhCC--C-eEEEEeCCH-HHHHhhcceEEEEcC-ceeEcCCCHHHHH
Confidence 9999999999999999999999999999999998762 4 999999995 458889999999998 65544 8776655
Q ss_pred H
Q 004537 385 A 385 (746)
Q Consensus 385 ~ 385 (746)
+
T Consensus 525 ~ 525 (530)
T COG0488 525 E 525 (530)
T ss_pred H
Confidence 4
|
|
| >COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.3e-29 Score=237.86 Aligned_cols=207 Identities=28% Similarity=0.467 Sum_probs=173.6
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh---
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (746)
.++++||... +-|-.+|+.+..||++-++|||||||||||-.++|.. +-+|+|.++|.|+..
T Consensus 3 l~qln~v~~~------------tRL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~---~~sGsi~~~G~~l~~~~~ 67 (248)
T COG4138 3 LMQLNDVAES------------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT---SGSGSIQFAGQPLEAWSA 67 (248)
T ss_pred eeeecccccc------------ccccccccccccceEEEEECCCCccHHHHHHHHhCCC---CCCceEEECCcchhHHhH
Confidence 3566676543 3478899999999999999999999999999999965 348999999999853
Q ss_pred -hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHH
Q 004537 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (746)
Q Consensus 226 -~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv 304 (746)
++.++-+|..|+..-...|.|...+.+. . +..+....++++...++|++..... +..|||||.|||
T Consensus 68 ~eLArhRAYLsQqq~p~f~mpV~~YL~L~----q----P~~~~a~~i~~i~~~L~l~DKL~Rs-----~~qLSGGEWQRV 134 (248)
T COG4138 68 TELARHRAYLSQQQTPPFAMPVWHYLTLH----Q----PDKTRTELLNDVAGALALDDKLGRS-----TNQLSGGEWQRV 134 (248)
T ss_pred hHHHHHHHHHhhccCCcchhhhhhhhhhc----C----chHHHHHHHHHHHhhhcccchhhhh-----hhhcCcccceee
Confidence 5666778998876544458899888754 2 2355667788899999998766543 468999999999
Q ss_pred HHHHHHhh-----CC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEe
Q 004537 305 CIGNEIII-----NP--SLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (746)
Q Consensus 305 ~IA~aL~~-----~p--~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~ 377 (746)
-+|...+. || ++|+||||.++||...+..+-+.|.+++++|.+||++.||+.. ..+.+|++.+|++|++...
T Consensus 135 RLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLNh-TLrhA~~~wLL~rG~l~~~ 213 (248)
T COG4138 135 RLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNH-TLRHAHRAWLLKRGKLLAS 213 (248)
T ss_pred EEeEEEEEecCCCCccceeEEecCCCcchhHHHHHHHHHHHHHHHhCCcEEEEeccchhh-HHHHHHHHHHHhcCeEEee
Confidence 99987753 44 6899999999999999999999999999999999999999875 5688999999999999999
Q ss_pred cCHHHHH
Q 004537 378 GKASEAM 384 (746)
Q Consensus 378 G~~~~~~ 384 (746)
|..+|++
T Consensus 214 G~~~eVl 220 (248)
T COG4138 214 GRREEVL 220 (248)
T ss_pred cchhhhc
Confidence 9999986
|
|
| >cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.9e-28 Score=244.85 Aligned_cols=165 Identities=18% Similarity=0.265 Sum_probs=130.0
Q ss_pred eceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCC-------CCCccEEEECCEeCCh-hccCcEEEEecCCcCCCCCC
Q 004537 174 NGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-------PTVGGSITYNDHPYSK-SLKSKIGFVTQDDVLFPHLT 245 (746)
Q Consensus 174 ~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~-------~~~~G~I~~~G~~~~~-~~~~~i~yv~Q~~~l~~~lT 245 (746)
+++++++++| +++|+||||||||||+++|+|.... ....|++.++|++... ..+++++||+|++..+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~---- 88 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGR---- 88 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCc----
Confidence 7889999999 9999999999999999999985421 1123678888876543 3357899999998766
Q ss_pred HHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHHHHHh----hCCCEEEEeC
Q 004537 246 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEII----INPSLLFLDE 321 (746)
Q Consensus 246 V~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~----~~p~illLDE 321 (746)
|.. . ..++++++++. .+..++ .+..||||||||++||++|+ .+|++++|||
T Consensus 89 ------~~~--~---------~~~~~~~~l~~---~~~~~~-----~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDE 143 (197)
T cd03278 89 ------YSI--I---------SQGDVSEIIEA---PGKKVQ-----RLSLLSGGEKALTALALLFAIFRVRPSPFCVLDE 143 (197)
T ss_pred ------eeE--E---------ehhhHHHHHhC---CCcccc-----chhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeC
Confidence 110 0 02355666665 333343 35689999999999999997 4669999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeC
Q 004537 322 PTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 371 (746)
Q Consensus 322 PTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~ 371 (746)
||+|||+.....+.+.|+++++ +.|||++||++. ..+.||+++.+..
T Consensus 144 P~~~LD~~~~~~l~~~l~~~~~-~~tiIiitH~~~--~~~~~d~v~~~~~ 190 (197)
T cd03278 144 VDAALDDANVERFARLLKEFSK-ETQFIVITHRKG--TMEAADRLYGVTM 190 (197)
T ss_pred CcccCCHHHHHHHHHHHHHhcc-CCEEEEEECCHH--HHhhcceEEEEEe
Confidence 9999999999999999999865 789999999975 3478999999974
|
Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w |
| >cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.2e-28 Score=248.86 Aligned_cols=188 Identities=15% Similarity=0.189 Sum_probs=139.3
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCChhccC
Q 004537 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKS 229 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~ 229 (746)
|+++|.. +| +++.+|+++++ ++++|+||||||||||+++|.- . +|.+.....++
T Consensus 6 l~l~nfk-~~--------~~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~-~-----------~G~~~~~~~~~ 59 (212)
T cd03274 6 LVLENFK-SY--------AGEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSMLF-V-----------FGFRASKMRQK 59 (212)
T ss_pred EEEECcc-cC--------CCCeeeccCCC-----CeEEEECCCCCCHHHHHHHHHH-H-----------hccCHHHhhhh
Confidence 5666654 34 45679999987 8999999999999999999972 1 22222122235
Q ss_pred cEEEEecCCcCCCCCCHHHHHHHHHhccCC-----CCCcHHHHHH--HHHHHHHHcCCCccccccccCccccCCCHHHHH
Q 004537 230 KIGFVTQDDVLFPHLTVKETLTYAALLRLP-----NTLTKQQKEK--RAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (746)
Q Consensus 230 ~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~-----~~~~~~~~~~--~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerq 302 (746)
++++++|+..+++.+|++|++.+....... .....+.... ...++++.++|++..++.+ +.||+||||
T Consensus 60 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~-----~~lS~G~~~ 134 (212)
T cd03274 60 KLSDLIHNSAGHPNLDSCSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNI-----SNLSGGEKT 134 (212)
T ss_pred hHHHHhcCCCCCCCCceEEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccch-----hhcCHHHHH
Confidence 789999999888889999887765432100 0011111000 1245566777877776643 579999999
Q ss_pred HHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeC
Q 004537 303 RVCIGNEIII----NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 371 (746)
Q Consensus 303 Rv~IA~aL~~----~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~ 371 (746)
|++||++++. +|++++|||||+|||+.++..+.+.|+++++ +.|+|++||++ ++.+.||++++|..
T Consensus 135 r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~-~~~~iivs~~~--~~~~~~d~v~~~~~ 204 (212)
T cd03274 135 LSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERTK-NAQFIVISLRN--NMFELADRLVGIYK 204 (212)
T ss_pred HHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcC-CCEEEEEECcH--HHHHhCCEEEEEEe
Confidence 9999999974 5799999999999999999999999999864 67899999995 57789999999975
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.1e-26 Score=238.71 Aligned_cols=186 Identities=16% Similarity=0.313 Sum_probs=131.5
Q ss_pred ccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCC---------------CCCCCcc--------EEEECCEe--
Q 004537 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRL---------------MEPTVGG--------SITYNDHP-- 222 (746)
Q Consensus 168 ~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~---------------~~~~~~G--------~I~~~G~~-- 222 (746)
+++.++++++ |++++|+||||||||||+++|++.+ .. +.+| +|.+++.+
T Consensus 13 ~~~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~-~~~~~~~~~~~v~i~~~~~~~~ 86 (243)
T cd03272 13 KDQTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLH-EGSGPSVMSAYVEIIFDNSDNR 86 (243)
T ss_pred ccCcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEe-CCCCCCCceEEEEEEEEcCCCc
Confidence 3567888887 7899999999999999999998321 11 1234 56666532
Q ss_pred --CC-h--hccCcEEEEecCCcCCC-CCCHHHHHHHHHhccCCCCCcH-HHHHHHHHHHHHHcCCCccccccccCccccC
Q 004537 223 --YS-K--SLKSKIGFVTQDDVLFP-HLTVKETLTYAALLRLPNTLTK-QQKEKRAIDVINELGLERCQDTMIGGSFVRG 295 (746)
Q Consensus 223 --~~-~--~~~~~i~yv~Q~~~l~~-~lTV~E~l~~~~~~~~~~~~~~-~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~ 295 (746)
+. . ..++.++|++|+..+++ ..|..|...+............ ...+.++.+ .+++.+..+. .++.
T Consensus 87 ~~~~~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~~~l~~~gl~~~~~~~~~~qg~i~~---l~~l~~~~~~-----~~~~ 158 (243)
T cd03272 87 FPIDKEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNLLESAGFSRSNPYYIVPQGKINS---LTNMKQDEQQ-----EMQQ 158 (243)
T ss_pred cCCCCCEEEEEEEEECCCCEEEECCeEcCHHHHHHHHHHcCCCCCCCcEEEEcCchHH---hhhccccccc-----cccc
Confidence 11 1 24677999999888876 3577776666554322211000 000112222 2344433333 3468
Q ss_pred CCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEe
Q 004537 296 VSGGERKRVCIGNEIII----NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG 370 (746)
Q Consensus 296 LSGGerqRv~IA~aL~~----~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~ 370 (746)
||||||||++|||+|+. +|++++|||||+|||+.++..+++.|+++++ ++|+|+++|++ ++.+.||++++|.
T Consensus 159 lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~-~~~ii~~~h~~--~~~~~~d~i~~l~ 234 (243)
T cd03272 159 LSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSD-GAQFITTTFRP--ELLEVADKFYGVK 234 (243)
T ss_pred cCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEecCH--HHHhhCCEEEEEE
Confidence 99999999999999974 5899999999999999999999999999865 78889888884 4678999999986
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.9e-26 Score=241.81 Aligned_cols=182 Identities=18% Similarity=0.249 Sum_probs=136.4
Q ss_pred CeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCE-eCCh------hccCcEEEEecCC---------cCCCCCCH
Q 004537 183 GEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDH-PYSK------SLKSKIGFVTQDD---------VLFPHLTV 246 (746)
Q Consensus 183 Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~-~~~~------~~~~~i~yv~Q~~---------~l~~~lTV 246 (746)
..+++|+||||||||||+++|++.+. +...|++...|. ++-. ..+.++++++|++ .+.|.+||
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~-~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV 103 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLG-ITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITV 103 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc-ccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEE
Confidence 34999999999999999999998653 223568888776 3311 1234799999985 34567899
Q ss_pred HHHHHHHHhccCCCCC-cHHHHHHHHHHHHHHcCCCccccc---------------cccCccccCCCHHHHHHHHHHHHH
Q 004537 247 KETLTYAALLRLPNTL-TKQQKEKRAIDVINELGLERCQDT---------------MIGGSFVRGVSGGERKRVCIGNEI 310 (746)
Q Consensus 247 ~E~l~~~~~~~~~~~~-~~~~~~~~v~~~l~~lgL~~~~~~---------------~vg~~~~~~LSGGerqRv~IA~aL 310 (746)
.+++..+...+. .. .+....+++.+.++.+|+...... ..-+..+..||||||||++||++|
T Consensus 104 ~r~I~~~~~~~~--~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al 181 (251)
T cd03273 104 TRQIVLGGTNKY--LINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLIL 181 (251)
T ss_pred EEEEEcCCceEE--EECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHH
Confidence 998876432111 01 122334678889999998611000 011234678999999999999999
Q ss_pred h----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEe
Q 004537 311 I----INPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG 370 (746)
Q Consensus 311 ~----~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~ 370 (746)
+ .+|+++++||||++||+.....+.+.|+++.+ |.|+|++||++ ++.+.||+++-+.
T Consensus 182 ~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~~-g~~ii~iSH~~--~~~~~~d~v~~~~ 242 (251)
T cd03273 182 ALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHFK-GSQFIVVSLKE--GMFNNANVLFRTR 242 (251)
T ss_pred HHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHcC-CCEEEEEECCH--HHHHhCCEEEEEE
Confidence 8 57899999999999999999999999999854 89999999994 5778899999875
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.1e-26 Score=233.64 Aligned_cols=192 Identities=18% Similarity=0.187 Sum_probs=132.2
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEe-CCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECC-Ee-CC-
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVN-PGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYND-HP-YS- 224 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~-~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G-~~-~~- 224 (746)
.|+++|+. +| .+. ++++|... +|++++|+||||||||||+++|++.++.+. .+....+. .. +.
T Consensus 5 ~i~l~nf~-~y--------~~~---~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~-~~~~~~~~~~~~~~~ 71 (213)
T cd03279 5 KLELKNFG-PF--------REE---QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKT-PRYGRQENLRSVFAP 71 (213)
T ss_pred EEEEECCc-Cc--------CCc---eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCc-cccccchhHHHHhcC
Confidence 47777776 44 121 56666543 589999999999999999999996554322 33333321 01 11
Q ss_pred hhccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHH
Q 004537 225 KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (746)
Q Consensus 225 ~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv 304 (746)
...+..|++++|++... .++.+.. .++.++..+.+ .++..++.+..+ ..+..||||||||+
T Consensus 72 ~~~~~~v~~~f~~~~~~--~~~~r~~----------gl~~~~~~~~~--~l~~g~l~~~l~-----~~~~~lS~G~~~r~ 132 (213)
T cd03279 72 GEDTAEVSFTFQLGGKK--YRVERSR----------GLDYDQFTRIV--LLPQGEFDRFLA-----RPVSTLSGGETFLA 132 (213)
T ss_pred CCccEEEEEEEEECCeE--EEEEEec----------CCCHHHHHHhh--hhhhcchHHHhc-----CCccccCHHHHHHH
Confidence 23356699999987431 1221111 12222222111 123333333333 34568999999999
Q ss_pred HHHHHHhh----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCe
Q 004537 305 CIGNEIII----------NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGS 373 (746)
Q Consensus 305 ~IA~aL~~----------~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~ 373 (746)
+||++|+. +|+++||||||++||+.+...+.+.|++++++|+|+|++||++. .+...+|+++++++|.
T Consensus 133 ~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~-~~~~~~~~i~~~~~~~ 210 (213)
T cd03279 133 SLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVEE-LKERIPQRLEVIKTPG 210 (213)
T ss_pred HHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchH-HHHhhCcEEEEEecCC
Confidence 99999985 57899999999999999999999999999877999999999975 4678899999999874
|
They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini. |
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.1e-25 Score=272.96 Aligned_cols=138 Identities=25% Similarity=0.369 Sum_probs=112.2
Q ss_pred CCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCcc-ccccccCccccCCCHHHHHHHHHHHHHh---hCCC
Q 004537 240 LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC-QDTMIGGSFVRGVSGGERKRVCIGNEII---INPS 315 (746)
Q Consensus 240 l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSGGerqRv~IA~aL~---~~p~ 315 (746)
.+...||.|+|.++..-........++..+++ +.++.+||.+. .+.. +.+||||||||++||++|+ .+|+
T Consensus 759 ~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~l~q~-----~~tLSGGE~QRV~LAraL~~~~~~P~ 832 (1809)
T PRK00635 759 RYKGKNIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLPLGRP-----LSSLSGGEIQRLKLAYELLAPSKKPT 832 (1809)
T ss_pred ccCCCCHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCcchhhcCc-----cccCCHHHHHHHHHHHHHhhcCCCCC
Confidence 45678999999987542111111233444556 58889999764 4543 4689999999999999998 6999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEe------CCeEEEecCHHHHHH
Q 004537 316 LLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG------KGSLLYFGKASEAMA 385 (746)
Q Consensus 316 illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~------~G~iv~~G~~~~~~~ 385 (746)
++||||||+|||+.+...+++.|++++++|.|||+++|++. .+ +.+|++++|. +|+++..|+++++..
T Consensus 833 LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~-~i-~~aDrVi~L~p~gg~~~G~iv~~Gtpeel~~ 906 (1809)
T PRK00635 833 LYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMH-VV-KVADYVLELGPEGGNLGGYLLASCSPEELIH 906 (1809)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-HhCCEEEEEccCCCCCCCEEEEeCCHHHHHh
Confidence 99999999999999999999999999888999999999975 34 8999999996 789999999998753
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-24 Score=237.10 Aligned_cols=222 Identities=23% Similarity=0.375 Sum_probs=186.0
Q ss_pred CceEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeC---
Q 004537 147 PIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY--- 223 (746)
Q Consensus 147 ~~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~--- 223 (746)
...|+++|++..- ..+...+++|||++++||+++|.|-.|-|-+.|+.+|+|.. . +.+|+|.++|+++
T Consensus 255 ~~vL~V~~L~v~~-------~~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr-~-~~~G~I~l~G~~v~~~ 325 (501)
T COG3845 255 EVVLEVEDLSVKD-------RRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLR-K-PASGRILLNGKDVLGR 325 (501)
T ss_pred CeEEEEeeeEeec-------CCCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCC-c-cCCceEEECCEecccc
Confidence 4579999998752 23357899999999999999999999999999999999953 2 3469999999996
Q ss_pred -Ch--hccCcEEEEecCC---cCCCCCCHHHHHHHHHhccCC----CCCcHHHHHHHHHHHHHHcCCCccccccccCccc
Q 004537 224 -SK--SLKSKIGFVTQDD---VLFPHLTVKETLTYAALLRLP----NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFV 293 (746)
Q Consensus 224 -~~--~~~~~i~yv~Q~~---~l~~~lTV~E~l~~~~~~~~~----~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~ 293 (746)
+. ..+..++|||+|. -+-+.+|+.||+.+....+.| .-+...+..+.+.+++++++....-.. ...
T Consensus 326 ~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~----~~a 401 (501)
T COG3845 326 LSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPD----APA 401 (501)
T ss_pred CCHHHHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCC----cch
Confidence 22 2346799999986 367789999999987543211 125567778889999999988632211 235
Q ss_pred cCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCe
Q 004537 294 RGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGS 373 (746)
Q Consensus 294 ~~LSGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~ 373 (746)
+.||||++||+-+||+|.++|++|+..+||.|||..+...|.+.|.++++.|+.|++++-++. +++.+||||.||.+|+
T Consensus 402 ~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLD-Eil~lsDrIaVi~~Gr 480 (501)
T COG3845 402 RSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLD-EILELSDRIAVIYEGR 480 (501)
T ss_pred hhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHH-HHHHhhheeeeeeCCc
Confidence 689999999999999999999999999999999999999999999999999999999999975 6999999999999999
Q ss_pred EEEecCHHH
Q 004537 374 LLYFGKASE 382 (746)
Q Consensus 374 iv~~G~~~~ 382 (746)
++...++++
T Consensus 481 i~~~~~~~~ 489 (501)
T COG3845 481 IVGIVPPEE 489 (501)
T ss_pred eeccccccc
Confidence 999888765
|
|
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=5e-26 Score=240.78 Aligned_cols=206 Identities=24% Similarity=0.303 Sum_probs=164.4
Q ss_pred ceEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh--
Q 004537 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (746)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (746)
..|+++||.|.|.. ..-=+..||++|++||++-|+|.||||||||+++|.|. +. |.+|+|++||+|++.
T Consensus 321 ~~lelrnvrfay~~-------~~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL-~~-PqsG~I~ldg~pV~~e~ 391 (546)
T COG4615 321 KTLELRNVRFAYQD-------NAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGL-YQ-PQSGEILLDGKPVSAEQ 391 (546)
T ss_pred cceeeeeeeeccCc-------ccceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcc-cC-CCCCceeECCccCCCCC
Confidence 36999999999842 22568899999999999999999999999999999995 44 458999999999973
Q ss_pred --hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHH
Q 004537 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (746)
Q Consensus 226 --~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqR 303 (746)
++|+-++-|+-|..+|+.+- .++.. ...+.++..++++.|.+...-.-|+-..-.||.|||||
T Consensus 392 ledYR~LfSavFsDyhLF~~ll------------~~e~~---as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKR 456 (546)
T COG4615 392 LEDYRKLFSAVFSDYHLFDQLL------------GPEGK---ASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKR 456 (546)
T ss_pred HHHHHHHHHHHhhhHhhhHhhh------------CCccC---CChHHHHHHHHHHHHhhhhcccCCcccccccccchHHH
Confidence 56777888999988887521 11111 12234666777777665433222222334699999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH-HHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecC
Q 004537 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQD-IAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (746)
Q Consensus 304 v~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~-l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (746)
+++-.||+-+-+|+++||=-+.-||.-++.+.+.+-- +.++||||+.+|||-. -|..+||++.+.+|++++.-+
T Consensus 457 lAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~--YF~~ADrll~~~~G~~~e~tg 531 (546)
T COG4615 457 LALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDH--YFIHADRLLEMRNGQLSELTG 531 (546)
T ss_pred HHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCch--hhhhHHHHHHHhcCceeeccc
Confidence 9999999999999999999999999999999887765 4567999999999943 588999999999999988753
|
|
| >cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.8e-25 Score=227.41 Aligned_cols=165 Identities=17% Similarity=0.267 Sum_probs=124.6
Q ss_pred ceEEEEeCCeEEEEECCCCccHHHHHHHHH----cCCCCCCCccEEEECCEeCC-hhccCcEEEEecCC-----cCCCCC
Q 004537 175 GITGSVNPGEVLALMGPSGSGKTTLLNLLS----GRLMEPTVGGSITYNDHPYS-KSLKSKIGFVTQDD-----VLFPHL 244 (746)
Q Consensus 175 ~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~----G~~~~~~~~G~I~~~G~~~~-~~~~~~i~yv~Q~~-----~l~~~l 244 (746)
..++++.+| +++|+||||||||||+++|. |... +.+|.+..+...+. ...+..|++++|++ .....+
T Consensus 15 ~~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~--~~~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~ 91 (204)
T cd03240 15 RSEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELP--PNSKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSL 91 (204)
T ss_pred ceEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCC--cccccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEh
Confidence 344567788 99999999999999999995 7542 33455542222222 23456799999987 445556
Q ss_pred CHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHH------HHHHHHHhhCCCEEE
Q 004537 245 TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR------VCIGNEIIINPSLLF 318 (746)
Q Consensus 245 TV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqR------v~IA~aL~~~p~ill 318 (746)
|+.||+.+. ..+ .+++.+ + ..++.||+||||| ++||++++.+|++++
T Consensus 92 ~~~~~~~~~---------~~~----~~~~~~---------~-----~~~~~LS~G~~~~~~la~rlala~al~~~p~ill 144 (204)
T cd03240 92 AILENVIFC---------HQG----ESNWPL---------L-----DMRGRCSGGEKVLASLIIRLALAETFGSNCGILA 144 (204)
T ss_pred hHhhceeee---------chH----HHHHHH---------h-----cCccccCccHHHHHHHHHHHHHHHHhccCCCEEE
Confidence 888888653 111 122222 2 2346899999996 789999999999999
Q ss_pred EeCCCCCCCHHHHH-HHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeC
Q 004537 319 LDEPTSGLDSTTAL-RIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGK 371 (746)
Q Consensus 319 LDEPTsgLD~~~~~-~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~ 371 (746)
+||||++||+..+. .+.+.|+++.++ |+|||++||++. ....||+++.|.+
T Consensus 145 lDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~--~~~~~d~i~~l~~ 197 (204)
T cd03240 145 LDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEE--LVDAADHIYRVEK 197 (204)
T ss_pred EcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHH--HHhhCCEEEEEee
Confidence 99999999999999 999999999776 889999999964 4577999999965
|
The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. |
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.6e-25 Score=249.35 Aligned_cols=197 Identities=28% Similarity=0.451 Sum_probs=156.8
Q ss_pred CceEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCChh
Q 004537 147 PIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS 226 (746)
Q Consensus 147 ~~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~ 226 (746)
...++++|++..- ...+..|++.++.++|||.+.|.||||||||||+|+|+|. . |--+|+|..-
T Consensus 390 ~~~i~~~nl~l~~-------p~~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGL-W-P~g~G~I~~P------- 453 (604)
T COG4178 390 DHGITLENLSLRT-------PDGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGL-W-PWGSGRISMP------- 453 (604)
T ss_pred cceeEEeeeeEEC-------CCCCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhcc-C-ccCCCceecC-------
Confidence 3579999999864 2345899999999999999999999999999999999995 4 2335777543
Q ss_pred ccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccC-ccccCCCHHHHHHHH
Q 004537 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGG-SFVRGVSGGERKRVC 305 (746)
Q Consensus 227 ~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~-~~~~~LSGGerqRv~ 305 (746)
....+-|+||.|.+... |.||-|.|.... .. ..++.+.++|.++||++..+..-+. +.-+.||+||||||+
T Consensus 454 ~~~~~lflpQ~PY~p~G-tLre~l~YP~~~---~~----~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRla 525 (604)
T COG4178 454 ADSALLFLPQRPYLPQG-TLREALCYPNAA---PD----FSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLA 525 (604)
T ss_pred CCCceEEecCCCCCCCc-cHHHHHhCCCCC---CC----CChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHH
Confidence 12458899999998765 999999986321 11 3345678899999998876653221 234569999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEe
Q 004537 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG 370 (746)
Q Consensus 306 IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~ 370 (746)
+||.|+++|++++|||.||+||+.++..+++.|++-. .+.|||-+.|++. +....++.+-+.
T Consensus 526 fARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~l-p~~tvISV~Hr~t--l~~~h~~~l~l~ 587 (604)
T COG4178 526 FARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEEL-PDATVISVGHRPT--LWNFHSRQLELL 587 (604)
T ss_pred HHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhC-CCCEEEEeccchh--hHHHHhhheeec
Confidence 9999999999999999999999999999999998743 3899999999975 456666655543
|
|
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.2e-24 Score=254.48 Aligned_cols=126 Identities=29% Similarity=0.453 Sum_probs=106.4
Q ss_pred CCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCc-cccccccCccccCCCHHHHHHHHHHHHHhhCC---CEEEE
Q 004537 244 LTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVRGVSGGERKRVCIGNEIIINP---SLLFL 319 (746)
Q Consensus 244 lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p---~illL 319 (746)
+||.|++.|...+. + ..+..+.++.+||.+ ..+. .+..||||||||+.||++|+.+| +++||
T Consensus 792 ltv~E~l~~f~~~~------~---i~~~l~~L~~vgL~~l~l~~-----~~~tLSgGEkQRl~LAraL~~~p~~~~llIL 857 (943)
T PRK00349 792 MTVEEALEFFEAIP------K---IARKLQTLVDVGLGYIKLGQ-----PATTLSGGEAQRVKLAKELSKRSTGKTLYIL 857 (943)
T ss_pred CcHHHHHHHHHhch------h---hhHHHHHHHHCCCCcccccC-----CcccCCHHHHHHHHHHHHHhcCCCCCeEEEE
Confidence 78999988865421 1 123467899999975 2343 34689999999999999999999 99999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEE------eCCeEEEecCHHHHHH
Q 004537 320 DEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL------GKGSLLYFGKASEAMA 385 (746)
Q Consensus 320 DEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL------~~G~iv~~G~~~~~~~ 385 (746)
||||+|||+.....+++.|+++.++|.|||+++|++.. .+.+|+|+.| ++|++++.|+++++.+
T Consensus 858 DEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~~--i~~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~~ 927 (943)
T PRK00349 858 DEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLDV--IKTADWIIDLGPEGGDGGGEIVATGTPEEVAK 927 (943)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHH--HHhCCEEEEecCCcCCCCCEEEEeCCHHHHHh
Confidence 99999999999999999999998789999999999753 4679999999 6899999999998753
|
|
| >COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.3e-24 Score=211.41 Aligned_cols=229 Identities=21% Similarity=0.309 Sum_probs=175.3
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCC--CCccEEEECCEeCC---
Q 004537 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP--TVGGSITYNDHPYS--- 224 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~--~~~G~I~~~G~~~~--- 224 (746)
+.++|++..+.. +.+...+++++|++++.||+-+++|.||||||-..|+|+|...+. .+.-+..+++.++-
T Consensus 4 LDIrnL~IE~~T----sqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~ 79 (330)
T COG4170 4 LDIRNLTIEFKT----SQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLS 79 (330)
T ss_pred ccccceEEEEec----CCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCC
Confidence 567777777643 345668999999999999999999999999999999999965431 12234456666542
Q ss_pred h-hc----cCcEEEEecCCcC--CCCCCHHHHHHHHHhccCCC-CCc--HHHHHHHHHHHHHHcCCCccccccccCcccc
Q 004537 225 K-SL----KSKIGFVTQDDVL--FPHLTVKETLTYAALLRLPN-TLT--KQQKEKRAIDVINELGLERCQDTMIGGSFVR 294 (746)
Q Consensus 225 ~-~~----~~~i~yv~Q~~~l--~~~lTV~E~l~~~~~~~~~~-~~~--~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 294 (746)
. +. -+.|++++|+|.- -|.-+|...|.-......-+ ..+ -..++.++-+++.++|+.+..|-+ ..++.
T Consensus 80 Pr~RRk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM--~SYP~ 157 (330)
T COG4170 80 PRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIM--RSYPY 157 (330)
T ss_pred hHHhhhhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHH--HhCcc
Confidence 1 22 2458899999863 33333433322111111001 111 134567788999999999877743 46788
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCChHHHhccCEEEEEeCCe
Q 004537 295 GVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGS 373 (746)
Q Consensus 295 ~LSGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~-~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~ 373 (746)
+|.-||-|+|.||.|++.+|++||.||||+++||.++.+|.++|.++.+ +|.||++++||.. .+.+.||+|-||.-|+
T Consensus 158 ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~-~is~W~d~i~VlYCGQ 236 (330)
T COG4170 158 ELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQ-MISQWADKINVLYCGQ 236 (330)
T ss_pred hhccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHH-HHHHHhhheEEEEecc
Confidence 9999999999999999999999999999999999999999999999975 4899999999976 4788999999999999
Q ss_pred EEEecCHHHHHH
Q 004537 374 LLYFGKASEAMA 385 (746)
Q Consensus 374 iv~~G~~~~~~~ 385 (746)
-++.++.+++++
T Consensus 237 ~~ESa~~e~l~~ 248 (330)
T COG4170 237 TVESAPSEELVT 248 (330)
T ss_pred cccccchhHHhc
Confidence 999999999874
|
|
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.2e-23 Score=247.95 Aligned_cols=125 Identities=27% Similarity=0.453 Sum_probs=103.1
Q ss_pred CCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCcc-ccccccCccccCCCHHHHHHHHHHHHHhh---CCCEEE
Q 004537 243 HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC-QDTMIGGSFVRGVSGGERKRVCIGNEIII---NPSLLF 318 (746)
Q Consensus 243 ~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSGGerqRv~IA~aL~~---~p~ill 318 (746)
.+||.|.+.|...+. ...+..++++.+||... .+. ..++|||||+||+.||++|+. +|++++
T Consensus 789 ~~tv~e~~~f~~~~~---------~i~~~l~~L~~~gL~~l~l~~-----~~~tLSgGe~QRl~LA~aL~~~~~~p~llI 854 (924)
T TIGR00630 789 DMTVEEAYEFFEAVP---------SISRKLQTLCDVGLGYIKLGQ-----PATTLSGGEAQRIKLAKELSKRSTGRTLYI 854 (924)
T ss_pred CCcHHHHHHHHHhcc---------chhHHHHHHHHcCCCchhhcC-----ccccCCHHHHHHHHHHHHHhhcCCCCCEEE
Confidence 467777777764321 01234578889999752 333 346899999999999999997 599999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEE------eCCeEEEecCHHHH
Q 004537 319 LDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL------GKGSLLYFGKASEA 383 (746)
Q Consensus 319 LDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL------~~G~iv~~G~~~~~ 383 (746)
|||||+|||+.....+++.|+++.++|.|||+++|++.. .+.||++++| ++|++++.|+++++
T Consensus 855 LDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~~--i~~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 855 LDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLDV--IKTADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH--HHhCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 999999999999999999999998889999999999753 4679999999 79999999998875
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.8e-24 Score=231.91 Aligned_cols=216 Identities=24% Similarity=0.349 Sum_probs=145.9
Q ss_pred ceEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCChhc
Q 004537 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (746)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~ 227 (746)
..+.++|+++++ .++.+++|+++++++|+.++|+|+|||||||+|++|.|+..+.+.+=.++.-.+.+....
T Consensus 74 ~dvk~~sls~s~--------~g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~~ps~ 145 (614)
T KOG0927|consen 74 RDVKIESLSLSF--------HGVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEPSE 145 (614)
T ss_pred ccceeeeeeecc--------CCceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccCCCch
Confidence 468999999987 567899999999999999999999999999999999998653232222332222221110
Q ss_pred cCcEEEEecCCcCCCCCCHHHHHHHHHh-c----------------cCCCCCcHHHHHHHHHHHHHHcCCC-cccccccc
Q 004537 228 KSKIGFVTQDDVLFPHLTVKETLTYAAL-L----------------RLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIG 289 (746)
Q Consensus 228 ~~~i~yv~Q~~~l~~~lTV~E~l~~~~~-~----------------~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg 289 (746)
..-+-+|.+. .-..+.-+.+-.. + .....+..+..+.++.+++..+|.. +..+.
T Consensus 146 ~~av~~v~~~-----~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k--- 217 (614)
T KOG0927|consen 146 KQAVQAVVME-----TDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDK--- 217 (614)
T ss_pred HHHHHHHhhh-----hHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHH---
Confidence 0111111100 0001111111000 0 0001122333445566667666543 33333
Q ss_pred CccccCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEE
Q 004537 290 GSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL 369 (746)
Q Consensus 290 ~~~~~~LSGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL 369 (746)
.+.++|||+|.|+++||+|..+|++|+|||||++||..+..-+-+.|.+..+ + ++|+++|.- ..+-..|.+|+-|
T Consensus 218 --~~~~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~-~-~lVi~sh~Q-Dfln~vCT~Ii~l 292 (614)
T KOG0927|consen 218 --KVKDLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDR-I-ILVIVSHSQ-DFLNGVCTNIIHL 292 (614)
T ss_pred --HhhccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccC-c-eEEEEecch-hhhhhHhhhhhee
Confidence 4568999999999999999999999999999999999999888888876532 2 899999984 4577889999999
Q ss_pred eCCe-EEEecCHHHHH
Q 004537 370 GKGS-LLYFGKASEAM 384 (746)
Q Consensus 370 ~~G~-iv~~G~~~~~~ 384 (746)
++++ +.|.|+.++.+
T Consensus 293 ~~kkl~~y~Gnydqy~ 308 (614)
T KOG0927|consen 293 DNKKLIYYEGNYDQYV 308 (614)
T ss_pred cccceeeecCCHHHHh
Confidence 9998 67778877644
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=6e-24 Score=233.21 Aligned_cols=203 Identities=22% Similarity=0.351 Sum_probs=157.2
Q ss_pred CceEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCChh
Q 004537 147 PIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS 226 (746)
Q Consensus 147 ~~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~ 226 (746)
++.+.++||+|.|. ++..++++++|-|.+++.+|+|||||+|||||||++.|.+. +..|.|.-.-
T Consensus 387 ~pvi~~~nv~F~y~-------~~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~--p~~G~vs~~~------ 451 (614)
T KOG0927|consen 387 PPVIMVQNVSFGYS-------DNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQ--PTIGMVSRHS------ 451 (614)
T ss_pred CCeEEEeccccCCC-------CcchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccc--cccccccccc------
Confidence 45799999999983 22379999999999999999999999999999999999654 4578775432
Q ss_pred ccCcEEEEecC--CcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHH
Q 004537 227 LKSKIGFVTQD--DVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (746)
Q Consensus 227 ~~~~i~yv~Q~--~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv 304 (746)
..++++-.|+ +.+--+.++-|++.=.. ++....+.+..++.++||....++ ...+.||+|||+||
T Consensus 452 -H~~~~~y~Qh~~e~ldl~~s~le~~~~~~--------~~~~~~e~~r~ilgrfgLtgd~q~----~p~~~LS~Gqr~rV 518 (614)
T KOG0927|consen 452 -HNKLPRYNQHLAEQLDLDKSSLEFMMPKF--------PDEKELEEMRSILGRFGLTGDAQV----VPMSQLSDGQRRRV 518 (614)
T ss_pred -cccchhhhhhhHhhcCcchhHHHHHHHhc--------cccchHHHHHHHHHHhCCCccccc----cchhhcccccchhH
Confidence 2334555554 23333467777765321 113345668889999999854443 24578999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeE-EEecCHH
Q 004537 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL-LYFGKAS 381 (746)
Q Consensus 305 ~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~i-v~~G~~~ 381 (746)
..|+.++..|.+|+|||||+|||..+...+-+.|.+.- | +||+++||.. -+-+.+++|.+..+|.+ .+.|...
T Consensus 519 lFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~~--G-gvv~vSHDfr-lI~qVaeEi~~c~~~~~~~~~G~i~ 592 (614)
T KOG0927|consen 519 LFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEFP--G-GVVLVSHDFR-LISQVAEEIWVCENGTVTKWDGDIE 592 (614)
T ss_pred HHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhccC--C-ceeeeechhh-HHHHHHHHhHhhccCceeecCccHH
Confidence 99999999999999999999999999999999888752 3 8999999965 47788999999988754 5666643
|
|
| >cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.4e-22 Score=203.56 Aligned_cols=167 Identities=20% Similarity=0.219 Sum_probs=121.1
Q ss_pred eeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEE--CCEeCCh-----hccCcEEEEecCCcCCCCCC
Q 004537 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITY--NDHPYSK-----SLKSKIGFVTQDDVLFPHLT 245 (746)
Q Consensus 173 L~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~--~G~~~~~-----~~~~~i~yv~Q~~~l~~~lT 245 (746)
++++++.+.+| +++|+||||||||||+.+|..-+ .|+... .|..... .....|.+++|+..+++
T Consensus 12 ~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l-----~~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~--- 82 (198)
T cd03276 12 HRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGL-----GGKASDTNRGSSLKDLIKDGESSAKITVTLKNQGLDA--- 82 (198)
T ss_pred eeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHh-----cCCcccccccccHHHHhhCCCCeEEEEEEEEcCCccC---
Confidence 46778888887 88999999999999999997422 122111 1221111 11345888888776554
Q ss_pred HHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHHHHH----hhCCCEEEEeC
Q 004537 246 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEI----IINPSLLFLDE 321 (746)
Q Consensus 246 V~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL----~~~p~illLDE 321 (746)
| ... ...+++++++++. .+..++ .++.||+|||||++||++| +.+|++++|||
T Consensus 83 ---~-----------~~~-~~~~~~~~~~l~~---~~~~~~-----~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDE 139 (198)
T cd03276 83 ---N-----------PLC-VLSQDMARSFLTS---NKAAVR-----DVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDE 139 (198)
T ss_pred ---C-----------cCC-HHHHHHHHHHhcc---ccccCC-----cccccChhHHHHHHHHHHHHHhcccCCCEEEecC
Confidence 1 011 1123556677766 444444 3468999999999999999 58999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHC---CCEEEEEecCCChHHHhccCEEEEEeCCe
Q 004537 322 PTSGLDSTTALRIVQMLQDIAEA---GKTVVTTIHQPSSRLFHKFDKLILLGKGS 373 (746)
Q Consensus 322 PTsgLD~~~~~~i~~~L~~l~~~---g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~ 373 (746)
||+|||+.+...+.+.|+++.++ ++|||+++|++.. +.+ +|+|-+|..++
T Consensus 140 P~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~~-i~~-~d~v~~~~~~~ 192 (198)
T cd03276 140 FDVFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDISG-LAS-SDDVKVFRMKD 192 (198)
T ss_pred cccccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCcccc-ccc-ccceeEEEecC
Confidence 99999999999999999998653 3689999999764 544 59999998753
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.8e-22 Score=218.55 Aligned_cols=204 Identities=21% Similarity=0.343 Sum_probs=157.9
Q ss_pred ceEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCChhc
Q 004537 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (746)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~ 227 (746)
..++|++|+..- +..+..+++|+|++|+.|+-+.|.||||||||+|+|+|+|. . |..+|.+.--.+..
T Consensus 432 n~i~~e~v~l~t------Pt~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggL-W-p~~~G~l~k~~~~~---- 499 (659)
T KOG0060|consen 432 NAIEFEEVSLST------PTNGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGL-W-PSTGGKLTKPTDGG---- 499 (659)
T ss_pred ceEEeeeeeecC------CCCCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcc-c-ccCCCeEEecccCC----
Confidence 479999999864 33355788899999999999999999999999999999984 4 34578886543321
Q ss_pred cCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCcccccccc------CccccCCCHHHH
Q 004537 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIG------GSFVRGVSGGER 301 (746)
Q Consensus 228 ~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg------~~~~~~LSGGer 301 (746)
-+.+-||||.|.+--. |.||-+.|...--.+ ..+...++++.+.|+.++|.|..+..-| -.....||+||+
T Consensus 500 ~~~lfflPQrPYmt~G-TLRdQvIYP~~~~~~--~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEq 576 (659)
T KOG0060|consen 500 PKDLFFLPQRPYMTLG-TLRDQVIYPLKAEDM--DSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQ 576 (659)
T ss_pred CCceEEecCCCCcccc-chhheeeccCccccc--cccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHH
Confidence 1458899999987654 999999987321111 1122334567777777777765543211 112346999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeC
Q 004537 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 371 (746)
Q Consensus 302 qRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~ 371 (746)
||++.||-+.++|++-||||.||++|...+..+.+.+++ .|.|.|-+.|+.+ +.+.-|.++-|+.
T Consensus 577 QRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~---~giT~iSVgHRkS--L~kfHd~~L~~~g 641 (659)
T KOG0060|consen 577 QRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCRE---MGITFISVGHRKS--LWKFHDYVLRMDG 641 (659)
T ss_pred HHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHH---cCCeEEEeccHHH--HHhhhhEEEEecC
Confidence 999999999999999999999999999999999998886 4999999999976 5666688888875
|
|
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1e-21 Score=211.62 Aligned_cols=174 Identities=27% Similarity=0.374 Sum_probs=136.0
Q ss_pred ceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEecCCcCCCCCCHHHHHH
Q 004537 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLT 251 (746)
Q Consensus 172 iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~ 251 (746)
-|+-=.++|..||+++++||||-||||+.++|+|.+. +++|+ .. .-+|+|=||--.--...||++-|.
T Consensus 356 ~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ik--Pdeg~----~~------~~~vSyKPQyI~~~~~gtV~~~l~ 423 (591)
T COG1245 356 KLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIK--PDEGS----EE------DLKVSYKPQYISPDYDGTVEDLLR 423 (591)
T ss_pred EEEecCCeeecceEEEEECCCCcchHHHHHHHhcccc--CCCCC----Cc------cceEeecceeecCCCCCcHHHHHH
Confidence 4555556777889999999999999999999999653 45676 11 234888888533223579999887
Q ss_pred HHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 004537 252 YAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTA 331 (746)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~ 331 (746)
-....+... .-...++++-|+|++..+..+ .+|||||.|||+||.+|.+++++.+||||++.||.+.+
T Consensus 424 ~~~~~~~~~-------s~~~~ei~~pl~l~~i~e~~v-----~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR 491 (591)
T COG1245 424 SAIRSAFGS-------SYFKTEIVKPLNLEDLLERPV-----DELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQR 491 (591)
T ss_pred Hhhhhhccc-------chhHHhhcCccchHHHHhccc-----ccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHH
Confidence 654322111 122357788899988888665 68999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEe
Q 004537 332 LRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLG 370 (746)
Q Consensus 332 ~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~ 370 (746)
..+-+.|+++... ++|.+++-||..- +--++||++|.+
T Consensus 492 ~~vakvIRR~~e~~~kta~vVdHDi~~-~dyvsDr~ivF~ 530 (591)
T COG1245 492 IIVAKVIRRFIENNEKTALVVDHDIYM-IDYVSDRLIVFE 530 (591)
T ss_pred HHHHHHHHHHHhhcCceEEEEecceeh-hhhhhceEEEEe
Confidence 9999999999864 7899999999753 444578888775
|
|
| >cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.6e-22 Score=209.10 Aligned_cols=178 Identities=17% Similarity=0.224 Sum_probs=117.6
Q ss_pred eEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEe-C-Ch---------hccCcEEEEecCCcC-CCCCCHHHHHH
Q 004537 184 EVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP-Y-SK---------SLKSKIGFVTQDDVL-FPHLTVKETLT 251 (746)
Q Consensus 184 e~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~-~-~~---------~~~~~i~yv~Q~~~l-~~~lTV~E~l~ 251 (746)
.+++|+|||||||||||++|++.+. + ..|++..++.. + .. ...-.+.|..|++.. .-..++++...
T Consensus 23 ~~~~i~G~NGsGKStll~ai~~~l~-~-~~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~~ 100 (247)
T cd03275 23 RFTCIIGPNGSGKSNLMDAISFVLG-E-KSSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRIITGGSS 100 (247)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC-C-CcccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEEECCce
Confidence 3999999999999999999998553 2 24665543321 0 00 111123444444321 00112222110
Q ss_pred HHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccc---------cccCc--------cccCCCHHHHHHHHHHHHHhhC-
Q 004537 252 YAALLRLPNTLTKQQKEKRAIDVINELGLERCQDT---------MIGGS--------FVRGVSGGERKRVCIGNEIIIN- 313 (746)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~---------~vg~~--------~~~~LSGGerqRv~IA~aL~~~- 313 (746)
..+.... ....+.++++++.+|+...... .+.+. .+..||||||||++||++++.+
T Consensus 101 ---~~~ingk---~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~~~ 174 (247)
T cd03275 101 ---SYRINGK---VVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAIHS 174 (247)
T ss_pred ---EEEECCE---EecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHHhc
Confidence 0011110 1123345688888888633211 11111 2368999999999999999875
Q ss_pred ---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeC
Q 004537 314 ---PSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 371 (746)
Q Consensus 314 ---p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~ 371 (746)
|+++||||||+|||+..+..+.+.|++++++|.|||++||++ ++.+.||++++|.+
T Consensus 175 ~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~--~~~~~~d~i~~~~~ 233 (247)
T cd03275 175 YQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKE--EFFSKADALVGVYR 233 (247)
T ss_pred cCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCH--HHHhhCCeEEEEEe
Confidence 899999999999999999999999999987799999999994 46788999999874
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription] | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.7e-21 Score=188.55 Aligned_cols=209 Identities=23% Similarity=0.305 Sum_probs=158.1
Q ss_pred ceEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh--
Q 004537 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (746)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (746)
..|++.++.|+|+ ...+++-|+|++++.|..+.++|.||||||||||+|+|.-. ...|.|.++|.+.-.
T Consensus 12 ~aievsgl~f~y~-------~~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhm--v~~~~v~VlgrsaFhDt 82 (291)
T KOG2355|consen 12 FAIEVSGLQFKYK-------VSDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHM--VGGGVVQVLGRSAFHDT 82 (291)
T ss_pred ceEEEeccEEecc-------cCCceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCccc--ccCCeEEEcCcCccccc
Confidence 3699999999994 23489999999999999999999999999999999999432 335899999986421
Q ss_pred -------------hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCcc
Q 004537 226 -------------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSF 292 (746)
Q Consensus 226 -------------~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~ 292 (746)
++.+.+++-- +-.+-.++++.+.| |+.. .... +|-+++++.|.+.- +. .
T Consensus 83 ~l~~Sgdl~YLGgeW~~~~~~ag-evplq~D~sae~mi-fgV~-----g~dp----~Rre~LI~iLDIdl-~W------R 144 (291)
T KOG2355|consen 83 SLESSGDLSYLGGEWSKTVGIAG-EVPLQGDISAEHMI-FGVG-----GDDP----ERREKLIDILDIDL-RW------R 144 (291)
T ss_pred cccccCceeEecccccccccccc-cccccccccHHHHH-hhcc-----CCCh----hHhhhhhhheeccc-eE------E
Confidence 2333333333 22223346765544 4432 1122 23345666666542 12 2
Q ss_pred ccCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCChHHHhccCEEEEEeC
Q 004537 293 VRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGK 371 (746)
Q Consensus 293 ~~~LSGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~-~g~Tvi~~~H~~~~~i~~~~D~i~vL~~ 371 (746)
.+.+|-|||+||.|++.|++.=++|+|||-|-.||..++.++++.|++-.+ +|.||+..||-... +.....+++.|++
T Consensus 145 mHkvSDGqrRRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDG-Le~Wpthl~yi~~ 223 (291)
T KOG2355|consen 145 MHKVSDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDG-LETWPTHLVYIKS 223 (291)
T ss_pred EeeccccchhhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccc-hhhcchhEEEecC
Confidence 357999999999999999999999999999999999999999999999875 48999999998654 6677899999999
Q ss_pred CeEEEecCHHHHH
Q 004537 372 GSLLYFGKASEAM 384 (746)
Q Consensus 372 G~iv~~G~~~~~~ 384 (746)
|+++..-+.+++.
T Consensus 224 Gkl~~~l~~~~i~ 236 (291)
T KOG2355|consen 224 GKLVDNLKYQKIK 236 (291)
T ss_pred Ceeeeccccchhh
Confidence 9999866555544
|
|
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.6e-22 Score=218.27 Aligned_cols=203 Identities=23% Similarity=0.287 Sum_probs=142.2
Q ss_pred ceEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCChhc
Q 004537 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (746)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~ 227 (746)
.+|...|++..| +.+.+|++-++++..|..++|+|+||+|||||||+|+. |.| ++-++.++.
T Consensus 79 ~Di~~~~fdLa~--------G~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~--------~~v--~~f~veqE~ 140 (582)
T KOG0062|consen 79 KDIHIDNFDLAY--------GGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN--------GQV--SGFHVEQEV 140 (582)
T ss_pred cceeeeeeeeee--------cchhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh--------cCc--CccCchhhe
Confidence 368888888888 57889999999999999999999999999999999984 222 222332232
Q ss_pred cCcEEEEecC-CcCCCCCCHHHHHHHHHhccCCCCCcHH-HHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHH
Q 004537 228 KSKIGFVTQD-DVLFPHLTVKETLTYAALLRLPNTLTKQ-QKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (746)
Q Consensus 228 ~~~i~yv~Q~-~~l~~~lTV~E~l~~~~~~~~~~~~~~~-~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~ 305 (746)
+. .+++-. +.+-.+.++.+-+.--. .+... ..++...++|..+|..+.... ...+.||||-|-|++
T Consensus 141 ~g--~~t~~~~~~l~~D~~~~dfl~~e~------~l~~~~~l~ei~~~~L~glGFt~emq~----~pt~slSGGWrMrla 208 (582)
T KOG0062|consen 141 RG--DDTEALQSVLESDTERLDFLAEEK------ELLAGLTLEEIYDKILAGLGFTPEMQL----QPTKSLSGGWRMRLA 208 (582)
T ss_pred ec--cchHHHhhhhhccHHHHHHHHhhh------hhhccchHHHHHHHHHHhCCCCHHHHh----ccccccCcchhhHHH
Confidence 22 122221 12222323332222110 11111 223334448888988754432 345789999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeE-EEecCHHHHH
Q 004537 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL-LYFGKASEAM 384 (746)
Q Consensus 306 IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~i-v~~G~~~~~~ 384 (746)
+||||..+|+||+|||||+.||..+..=+.+.|+.+ +.|+|+++|| +..+-..|..|+-+++-++ .|.|+.++..
T Consensus 209 LARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~---~~T~liVSHD-r~FLn~V~tdIIH~~~~kL~~YkGN~~~Fv 284 (582)
T KOG0062|consen 209 LARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTW---KITSLIVSHD-RNFLNTVCTDIIHLENLKLDYYKGNYSQFV 284 (582)
T ss_pred HHHHHhcCCCEEeecCCcccchhHHHHHHHHHHhhC---CceEEEEecc-HHHHHHHHHHHHHHhhhhhhhhcCcHHHHH
Confidence 999999999999999999999999988888888764 4799999999 5556677888887777555 4566655543
|
|
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.1e-20 Score=201.68 Aligned_cols=193 Identities=26% Similarity=0.400 Sum_probs=150.2
Q ss_pred CCceEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh
Q 004537 146 LPIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK 225 (746)
Q Consensus 146 ~~~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~ 225 (746)
.|+.|-++||+|.|+ +.++++++++|-|.-...+||+||||.||||||++|.|.+. | ..|+..-
T Consensus 583 ~PPvLGlH~VtFgy~-------gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~-P-~~GE~RK------- 646 (807)
T KOG0066|consen 583 NPPVLGLHDVTFGYP-------GQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLD-P-NDGELRK------- 646 (807)
T ss_pred CCCeeecccccccCC-------CCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCC-C-Ccchhhc-------
Confidence 356799999999983 56789999999999999999999999999999999999764 3 4676532
Q ss_pred hccCcEEEEecCC--cCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHH
Q 004537 226 SLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (746)
Q Consensus 226 ~~~~~i~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqR 303 (746)
..|-+||+..|+. .|-..-|.-|.|.-... ++. +.+...|-.+||...++|. .+..||||||-|
T Consensus 647 nhrL~iG~FdQh~~E~L~~Eetp~EyLqr~FN------lpy----q~ARK~LG~fGL~sHAHTi----kikdLSGGQKaR 712 (807)
T KOG0066|consen 647 NHRLRIGWFDQHANEALNGEETPVEYLQRKFN------LPY----QEARKQLGTFGLASHAHTI----KIKDLSGGQKAR 712 (807)
T ss_pred cceeeeechhhhhHHhhccccCHHHHHHHhcC------CCh----HHHHHHhhhhhhhhccceE----eeeecCCcchHH
Confidence 2345699988874 35555677777654321 222 2345678889999888885 367899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCC
Q 004537 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKG 372 (746)
Q Consensus 304 v~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G 372 (746)
|++|.--+..|+||||||||++||.++...+-+.|++.. -.||+++||-.. +.+.--.+.|+.+-
T Consensus 713 ValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney~---GgVi~VsHDeRL-i~eT~C~LwVvE~Q 777 (807)
T KOG0066|consen 713 VALAELALGGPDVLILDEPTNNLDIESIDALAEAINEYN---GGVIMVSHDERL-IVETDCNLWVVENQ 777 (807)
T ss_pred HHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhcc---CcEEEEecccce-eeecCceEEEEccC
Confidence 999999999999999999999999999999999988763 379999999553 33333355665543
|
|
| >cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.1e-20 Score=191.35 Aligned_cols=81 Identities=19% Similarity=0.224 Sum_probs=68.6
Q ss_pred cccCCCHHHHHHHHHHHHH----hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-C-CEEEEEecCCChHHHhccC-
Q 004537 292 FVRGVSGGERKRVCIGNEI----IINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-G-KTVVTTIHQPSSRLFHKFD- 364 (746)
Q Consensus 292 ~~~~LSGGerqRv~IA~aL----~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~-g-~Tvi~~~H~~~~~i~~~~D- 364 (746)
.+.+||||||||+.++++| +.+|+++++||||+|||+.++..+++.|++++++ | .|+|++||++.. +.+.+|
T Consensus 123 ~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~-~~~~~~~ 201 (213)
T cd03277 123 DPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLLP-GLNYHEK 201 (213)
T ss_pred chhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhcc-CCcccCc
Confidence 3568999999998877554 5799999999999999999999999999999776 5 589999999754 446665
Q ss_pred -EEEEEeCCe
Q 004537 365 -KLILLGKGS 373 (746)
Q Consensus 365 -~i~vL~~G~ 373 (746)
+|++|++|+
T Consensus 202 ~~v~~l~~g~ 211 (213)
T cd03277 202 MTVLCVYNGP 211 (213)
T ss_pred eEEEEEecCc
Confidence 888888886
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.1e-20 Score=200.41 Aligned_cols=205 Identities=23% Similarity=0.332 Sum_probs=157.0
Q ss_pred CCceEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh
Q 004537 146 LPIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK 225 (746)
Q Consensus 146 ~~~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~ 225 (746)
.++.+++.+|+|.|.. ++-+++.+++..++.-+..+++|+||+||||++|++.|.+. +..|.+.+.+
T Consensus 359 ~~p~l~i~~V~f~y~p------~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~--~~rgi~~~~~----- 425 (582)
T KOG0062|consen 359 SPPNLRISYVAFEYTP------SEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLT--PTRGIVGRHP----- 425 (582)
T ss_pred CCCeeEEEeeeccCCC------cchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCC--cccceeeecc-----
Confidence 3557999999998831 12279999999999999999999999999999999998553 3467776553
Q ss_pred hccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHH
Q 004537 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (746)
Q Consensus 226 ~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~ 305 (746)
|.+|+|-.|...=+-.+.|.+- .+...++ |. .++ +.++.-+..+||+... ....+.+||||||=||+
T Consensus 426 --r~ri~~f~Qhhvd~l~~~v~~v-d~~~~~~-pG-~~~----ee~r~hl~~~Gl~g~l----a~~si~~LSGGQKsrva 492 (582)
T KOG0062|consen 426 --RLRIKYFAQHHVDFLDKNVNAV-DFMEKSF-PG-KTE----EEIRRHLGSFGLSGEL----ALQSIASLSGGQKSRVA 492 (582)
T ss_pred --cceecchhHhhhhHHHHHhHHH-HHHHHhC-CC-CCH----HHHHHHHHhcCCCchh----hhccccccCCcchhHHH
Confidence 5679999997543333455443 3333332 22 233 3455678899997422 12235789999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEE-ecCH
Q 004537 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY-FGKA 380 (746)
Q Consensus 306 IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~-~G~~ 380 (746)
+|.....+|.+|+|||||+.||-.+-..+.+.|+++. | .||++||+. +.+-..|+.+.+.++|++.- .|..
T Consensus 493 fA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F~--G-GVv~VSHd~-~fi~~~c~E~Wvve~g~vt~ieg~~ 564 (582)
T KOG0062|consen 493 FAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNFN--G-GVVLVSHDE-EFISSLCKELWVVEDGKVTPIEGGI 564 (582)
T ss_pred HHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhcC--C-cEEEEECcH-HHHhhcCceeEEEcCCcEEeeeccH
Confidence 9999999999999999999999999999999998762 3 799999995 45778899999999999864 3444
|
|
| >cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.2e-20 Score=186.14 Aligned_cols=153 Identities=23% Similarity=0.215 Sum_probs=109.8
Q ss_pred ceeceEEEEeCCe-EEEEECCCCccHHHHHHHHH-cCCCCCCCcc-EEEECCEeCChhccCcEEEEecCCcCCCCCCHHH
Q 004537 172 ILNGITGSVNPGE-VLALMGPSGSGKTTLLNLLS-GRLMEPTVGG-SITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKE 248 (746)
Q Consensus 172 iL~~vs~~i~~Ge-~~aIvGpsGsGKSTLL~~L~-G~~~~~~~~G-~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTV~E 248 (746)
-.-++|+++.+|+ +++|.||||||||||||+|+ +.+. ...| .+-.. -...++|+.|....+
T Consensus 16 ~~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~--~~~G~~vp~~-------~~~~~~~~~~~~~~l------- 79 (200)
T cd03280 16 KVVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLM--AQSGLPIPAA-------EGSSLPVFENIFADI------- 79 (200)
T ss_pred ceEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHH--HHcCCCcccc-------ccccCcCccEEEEec-------
Confidence 4568999999995 89999999999999999998 2110 0011 00000 001233444431111
Q ss_pred HHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 004537 249 TLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDS 328 (746)
Q Consensus 249 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~illLDEPTsgLD~ 328 (746)
+.++..+. ....+|+|||||+.|+++ +.+|+++++||||+|||+
T Consensus 80 ------------------------------g~~~~l~~-----~~s~fs~g~~~~~~i~~~-~~~p~llllDEp~~glD~ 123 (200)
T cd03280 80 ------------------------------GDEQSIEQ-----SLSTFSSHMKNIARILQH-ADPDSLVLLDELGSGTDP 123 (200)
T ss_pred ------------------------------Cchhhhhc-----CcchHHHHHHHHHHHHHh-CCCCcEEEEcCCCCCCCH
Confidence 11111111 124699999999999987 489999999999999999
Q ss_pred HHHHHHH-HHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEec
Q 004537 329 TTALRIV-QMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (746)
Q Consensus 329 ~~~~~i~-~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G 378 (746)
.....+. ..++++.+.|.|+|++||+. ++.+.||++++|++|++++.+
T Consensus 124 ~~~~~i~~~~l~~l~~~~~~vi~~tH~~--~l~~~~d~~~~l~~g~l~~~~ 172 (200)
T cd03280 124 VEGAALAIAILEELLERGALVIATTHYG--ELKAYAYKREGVENASMEFDP 172 (200)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEECCHH--HHHHHHhcCCCeEEEEEEEec
Confidence 9999996 46788877789999999983 577899999999999998874
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a |
| >PF01061 ABC2_membrane: ABC-2 type transporter; InterPro: IPR013525 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.7e-21 Score=196.05 Aligned_cols=206 Identities=28% Similarity=0.549 Sum_probs=182.6
Q ss_pred HHHHHHHHHHHHH-hhcchhH-HHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Q 004537 491 QQYTILFRRGIKE-HRHDYFS-WLRITQVLATAVILGLLWWQSDSKSPKGLEDQAGLLFFIAVFWSFFPIFTAIFTFPQE 568 (746)
Q Consensus 491 ~Q~~~L~~R~~~~-~R~~~~~-~~r~~~~i~~ali~G~lf~~~~~~~~~~~~~~~g~lff~~~~~~~~~~~~~i~~~~~e 568 (746)
+|++.+++|+++. +|++... ..+++..++.++++|.+|.+++ ++.++. ++.|++++.+...++............|
T Consensus 1 ~q~~~l~~r~~~~~~r~~~~~~~~~~~~pl~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (210)
T PF01061_consen 1 RQIWALLRREFKRFWRNPFLGLIWSLIFPLLLLLIFGFIFGKLG-NSQDGF-NRPGLIFGSIIFSFFSSISGSSISFERE 78 (210)
T ss_pred CHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHhccc-cccccc-ccceeeehhhHHhhhhhcccchhhhhhh
Confidence 5999999999985 6888666 7889999999999999999886 344455 7788888877776655544455778899
Q ss_pred hHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 004537 569 RAMLSKERAADMYRLSAYFLARTTSDLPLNLVLPVLFLVIVYFMAGLRMGAGPFFLSMLTVFLSIVAAQGLGLAIGAILM 648 (746)
Q Consensus 569 R~v~~rEr~~g~Y~~~ay~la~~l~~lP~~~~~~~if~~ivY~m~gl~~~~~~Ff~f~l~~~l~~~~~~slg~~i~a~~~ 648 (746)
|..+.||+.++.|++.+|++|+.+.+++..++..+++.++.|++.|++.+ +|+.+++.++++.+++.++|.+++++++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~g~~~~~~~~ 156 (210)
T PF01061_consen 79 RGTLERERASPLYSPFAYLLAKVLSAFLISLIISLIVLIIAYLLFGLDFE--SFFLFLLILLLSILCSSGLGLLLAALFP 156 (210)
T ss_pred ccccccccccccccchhhheeeccccccccccccchhhhhhhhhhccccc--cchheecccccccccccccccccccchh
Confidence 99999999999999999999999999999999999999999999999887 6777778888888999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHhhcccC--CCccchhhhhccCHHHHHHHHHHHHHc
Q 004537 649 DLKKATTLASVTIMTFMLAGGYFVQ--EVPVFISWIRYMSFNFHTYKILLKIQY 700 (746)
Q Consensus 649 ~~~~A~~~~~~~~~~~~lf~Gf~i~--~ip~~~~Wl~yiS~~~yafeal~~nef 700 (746)
+.+.+..+.+++..++++++|.+.| .+|+|++|+.|+||.+|++|++..++|
T Consensus 157 ~~~~~~~~~~~~~~~~~~~sg~~~p~~~lP~~~~~i~~~~P~~~~~~~~r~~~f 210 (210)
T PF01061_consen 157 SFRDASAISSLILLLLFFLSGVFFPLSSLPSWLRWISYLNPLTYAVEALRAALF 210 (210)
T ss_pred hhhhhhhhhhhcccccccceeeecchHHChHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 9999999999999999999999998 799999999999999999999998876
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A number of bacterial transport systems have been found to contain integral membrane components that have similar sequences []: these systems fit the characteristics of ATP-binding cassette transporters []. The proteins form homo- or hetero-oligomeric channels, allowing ATP-mediated transport. Hydropathy analysis of the proteins has revealed the presence of 6 possible transmembrane regions. These proteins belong to family 2 of ABC transporters.; GO: 0016020 membrane |
| >cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.9e-19 Score=175.75 Aligned_cols=74 Identities=24% Similarity=0.353 Sum_probs=68.5
Q ss_pred CCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeC
Q 004537 296 VSGGERKRVCIGNEII----INPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 371 (746)
Q Consensus 296 LSGGerqRv~IA~aL~----~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~ 371 (746)
||||||||++||++++ .+|+++++|||+++||+..+..+.+.|++++++|.|+|+++|++. ....+|+++.+.+
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~--~~~~adrvi~i~~ 172 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKE--MFENADKLIGVLF 172 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHH--HHhhCCeEEEEEE
Confidence 9999999999999996 699999999999999999999999999999877899999999964 4578999999975
|
SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression. |
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.4e-19 Score=195.27 Aligned_cols=170 Identities=31% Similarity=0.486 Sum_probs=127.0
Q ss_pred EEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEe-------------CChhcc----C--cEEEEec---
Q 004537 179 SVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP-------------YSKSLK----S--KIGFVTQ--- 236 (746)
Q Consensus 179 ~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~-------------~~~~~~----~--~i~yv~Q--- 236 (746)
..++|++++|+||||-||||-+|+|+|.+. |. =|+ .++.| +...++ . ++..=+|
T Consensus 96 ~pr~G~V~GilG~NGiGKsTalkILaGel~-PN-LG~--~~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd 171 (591)
T COG1245 96 TPRPGKVVGILGPNGIGKSTALKILAGELK-PN-LGR--YEDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVD 171 (591)
T ss_pred CCCCCcEEEEEcCCCccHHHHHHHHhCccc-cC-CCC--CCCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHHH
Confidence 457999999999999999999999999764 33 232 22221 100010 1 1222233
Q ss_pred -CCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHHHHHhhCCC
Q 004537 237 -DDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPS 315 (746)
Q Consensus 237 -~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~ 315 (746)
-|..+. -||.|-|.-. ...-..+++++.++|.+..|..+ +.|||||-||++||.+++++++
T Consensus 172 ~iPk~~K-G~v~elLk~~------------de~g~~devve~l~L~nvl~r~v-----~~LSGGELQr~aIaa~l~rdAD 233 (591)
T COG1245 172 LIPKVVK-GKVGELLKKV------------DERGKFDEVVERLGLENVLDRDV-----SELSGGELQRVAIAAALLRDAD 233 (591)
T ss_pred HHHHHhc-chHHHHHHhh------------hhcCcHHHHHHHhcchhhhhhhh-----hhcCchHHHHHHHHHHHhccCC
Confidence 233343 3677765421 11235788999999998888654 6899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeC
Q 004537 316 LLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 371 (746)
Q Consensus 316 illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~ 371 (746)
++++|||||-||...+...-+.++++++.+++||++-||+.- +--++|-|.++..
T Consensus 234 vY~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLav-LD~lsD~vhI~YG 288 (591)
T COG1245 234 VYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLAV-LDYLSDFVHILYG 288 (591)
T ss_pred EEEEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEechHHH-HHHhhheeEEEec
Confidence 999999999999999999999999999889999999999753 4446788888864
|
|
| >cd03283 ABC_MutS-like MutS-like homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.1e-19 Score=180.87 Aligned_cols=136 Identities=19% Similarity=0.258 Sum_probs=102.9
Q ss_pred cccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEecCCcCCCCCCHHH
Q 004537 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKE 248 (746)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTV~E 248 (746)
++.+++|+++.. |++++|+||||||||||+|+|+|... +...|.++... .+++|.+.+|+.+|+.|
T Consensus 13 ~~~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~-------l~~~G~~v~a~-----~~~~q~~~l~~~~~~~d 78 (199)
T cd03283 13 EKRVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVI-------LAQAGAPVCAS-----SFELPPVKIFTSIRVSD 78 (199)
T ss_pred CCeecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHH-------HHHcCCEEecC-----ccCcccceEEEeccchh
Confidence 346788887765 79999999999999999999998431 12344444221 36778888899999999
Q ss_pred HHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 004537 249 TLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDS 328 (746)
Q Consensus 249 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~illLDEPTsgLD~ 328 (746)
|+.++.. .... ..+++.++++.+++ .+|+++++||||+|+|+
T Consensus 79 ~l~~~~s------~~~~-e~~~~~~iL~~~~~-------------------------------~~p~llllDEp~~glD~ 120 (199)
T cd03283 79 DLRDGIS------YFYA-ELRRLKEIVEKAKK-------------------------------GEPVLFLLDEIFKGTNS 120 (199)
T ss_pred ccccccC------hHHH-HHHHHHHHHHhccC-------------------------------CCCeEEEEecccCCCCH
Confidence 9987531 1122 22556777776642 79999999999999999
Q ss_pred HHHHHHHH-HHHHHHHCCCEEEEEecCCC
Q 004537 329 TTALRIVQ-MLQDIAEAGKTVVTTIHQPS 356 (746)
Q Consensus 329 ~~~~~i~~-~L~~l~~~g~Tvi~~~H~~~ 356 (746)
.....+.. .++++.+.|.|+|++||++.
T Consensus 121 ~~~~~l~~~ll~~l~~~~~tiiivTH~~~ 149 (199)
T cd03283 121 RERQAASAAVLKFLKNKNTIGIISTHDLE 149 (199)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEcCcHH
Confidence 99987754 68888777899999999975
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid |
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.4e-18 Score=214.23 Aligned_cols=200 Identities=24% Similarity=0.363 Sum_probs=145.1
Q ss_pred cceeceEEEEeCCeEEEEECCCCccHHHHHHHHH-c----CCCC--CCCccEEEECCEeCCh--------------hcc-
Q 004537 171 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLS-G----RLME--PTVGGSITYNDHPYSK--------------SLK- 228 (746)
Q Consensus 171 ~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~-G----~~~~--~~~~G~I~~~G~~~~~--------------~~~- 228 (746)
.=|+||+.+|+-|.+++|.|.||||||||++-.. - .+.. ....--|.+|..|+.. ..|
T Consensus 1504 nNLk~v~v~iPlg~l~~vTGVSGSGKStLi~~~l~~~l~~~l~~g~~~~~~vi~vdQspIgrt~RS~paTY~g~fd~IR~ 1583 (1809)
T PRK00635 1504 HTIQNLNVSAPLHSLVAISGVSGSGKTSLLLEGFYKQACALIEKGPSVFSEIIFLDSHPQISSQRSDISTYFDIAPSLRN 1583 (1809)
T ss_pred ccCCcceeeccCCcEEEEeCCCCCcHHHHHHHHHHHHHHHHhcccccccCcEEEEeCCCCCCCCCCchhhhhhhHHHHHH
Confidence 3489999999999999999999999999997433 1 1100 0123447777666521 000
Q ss_pred ---------------CcE---------------EEEecCCcCCC--------------------------------CCCH
Q 004537 229 ---------------SKI---------------GFVTQDDVLFP--------------------------------HLTV 246 (746)
Q Consensus 229 ---------------~~i---------------~yv~Q~~~l~~--------------------------------~lTV 246 (746)
.+. |++.=+-.++| .|||
T Consensus 1584 lFA~~~~ak~rg~~~~~FSfN~~~GrC~~C~G~G~i~i~m~fl~dv~~~C~~C~G~R~~~e~L~v~~~gk~I~dvL~mtv 1663 (1809)
T PRK00635 1584 FYASLTQAKALNISASMFSTNTKQGQCSDCWGLGYQWIDRAFYALEKRPCPTCSGFRIQPLAQEVVYEGKHFGQLLQTPI 1663 (1809)
T ss_pred HHhcCHHHHHcCCCcccccccCCCCCCCCCccCceEEEecccCCCcccCCCCCCCcCCCHHHHhheeCCCCHHHHhcCCH
Confidence 001 11111111111 3677
Q ss_pred HHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHHHHHhhC---CCEEEEeCCC
Q 004537 247 KETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIIN---PSLLFLDEPT 323 (746)
Q Consensus 247 ~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~---p~illLDEPT 323 (746)
.|.+.|... ..+-.+.-+.|.++||.... +| +...+|||||.||+-||.+|..+ +.+++|||||
T Consensus 1664 ~ea~~~F~~---------~~~i~~~L~~L~~vGLgYl~---LG-q~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt 1730 (1809)
T PRK00635 1664 EEVAETFPF---------LKKIQKPLQALIDNGLGYLP---LG-QNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIA 1730 (1809)
T ss_pred HHHHHHhhc---------cHHHHHHHHHHHHcCCCeee---CC-CcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCC
Confidence 776666421 11234456788889997532 33 44567999999999999999876 7899999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEE------eCCeEEEecCHHHHHH
Q 004537 324 SGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL------GKGSLLYFGKASEAMA 385 (746)
Q Consensus 324 sgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL------~~G~iv~~G~~~~~~~ 385 (746)
+||++.....+++.|++|.+.|.|||++.|++ ++.+.||.|+=| +.|+|++.|+|+++.+
T Consensus 1731 ~GLh~~d~~~Ll~~l~~L~~~g~tvivieH~~--~~i~~aD~iidlgp~gG~~GG~iva~Gtp~~i~~ 1796 (1809)
T PRK00635 1731 TSLDNQQKSALLVQLRTLVSLGHSVIYIDHDP--ALLKQADYLIEMGPGSGKTGGKILFSGPPKDISA 1796 (1809)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCeEEEEeCCH--HHHHhCCEEEEcCCCcccCCCEEEEEeCHHHHhh
Confidence 99999999999999999999999999999996 467889999999 3479999999999864
|
|
| >COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.1e-18 Score=195.90 Aligned_cols=128 Identities=28% Similarity=0.484 Sum_probs=104.9
Q ss_pred CCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHHHHHhhCC---CEEEE
Q 004537 243 HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINP---SLLFL 319 (746)
Q Consensus 243 ~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p---~illL 319 (746)
.|||.|...|... . ..-.+..+.|.++||.-. .+| +...+|||||.|||-+|.+|.++. -+++|
T Consensus 783 ~MTveEA~~FF~~------~---p~I~rkLqtL~dVGLgYi---~LG-QpatTLSGGEaQRvKLA~EL~k~~tg~TlYiL 849 (935)
T COG0178 783 DMTVEEALEFFEA------I---PKIARKLQTLVDVGLGYI---KLG-QPATTLSGGEAQRVKLAKELSKRSTGKTLYIL 849 (935)
T ss_pred hccHHHHHHHHhc------c---hHHHHHHHHHHHcCcceE---ecC-CccccccchHHHHHHHHHHHhhccCCCeEEEe
Confidence 3667776666532 1 123345567788888643 233 445689999999999999999887 89999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEE------eCCeEEEecCHHHHHH
Q 004537 320 DEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL------GKGSLLYFGKASEAMA 385 (746)
Q Consensus 320 DEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL------~~G~iv~~G~~~~~~~ 385 (746)
||||+||-.....++++.|.+|.+.|.|||+|-|.+. +.+.||.|+=| +.|+|+..|+|+|+.+
T Consensus 850 DEPTTGLH~~Di~kLl~VL~rLvd~GnTViVIEHNLd--VIk~AD~IIDLGPeGG~~GG~iva~GTPeeva~ 919 (935)
T COG0178 850 DEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNLD--VIKTADWIIDLGPEGGDGGGEIVASGTPEEVAK 919 (935)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecccc--eEeecCEEEEcCCCCCCCCceEEEecCHHHHHh
Confidence 9999999999999999999999999999999999975 68999999998 4579999999999875
|
|
| >cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.9e-19 Score=181.83 Aligned_cols=153 Identities=22% Similarity=0.213 Sum_probs=116.1
Q ss_pred cccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEE-EEecCCcCCCCCCHH
Q 004537 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIG-FVTQDDVLFPHLTVK 247 (746)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~-yv~Q~~~l~~~lTV~ 247 (746)
.+.+.+|++++.++|++++|.||||+|||||++.++- . .+..++| |||.+...++
T Consensus 16 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~-~------------------~~la~~g~~vpa~~~~~~----- 71 (222)
T cd03285 16 VAFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGV-I------------------VLMAQIGCFVPCDSADIP----- 71 (222)
T ss_pred CCeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHH-H------------------HHHHHhCCCcCcccEEEe-----
Confidence 4568999999999999999999999999999999972 1 1122333 5555432221
Q ss_pred HHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHHHHH--hhCCCEEEEeCC---
Q 004537 248 ETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEI--IINPSLLFLDEP--- 322 (746)
Q Consensus 248 E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL--~~~p~illLDEP--- 322 (746)
.+++++..+++++.. .+++|.|+++++.+++++ +.+|+++|||||
T Consensus 72 ----------------------~~~~il~~~~l~d~~--------~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~g 121 (222)
T cd03285 72 ----------------------IVDCILARVGASDSQ--------LKGVSTFMAEMLETAAILKSATENSLIIIDELGRG 121 (222)
T ss_pred ----------------------ccceeEeeeccccch--------hcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCC
Confidence 122344555665432 257999999999999999 899999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecC
Q 004537 323 TSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (746)
Q Consensus 323 TsgLD~~~~~~i~~~L~~l~~-~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (746)
|++||+...... .++.+.+ .|.++|++||+ .++.++||++..+++|++...++
T Consensus 122 T~~lD~~~~~~~--il~~l~~~~~~~vlisTH~--~el~~~~~~~~~i~~g~~~~~~~ 175 (222)
T cd03285 122 TSTYDGFGLAWA--IAEYIATQIKCFCLFATHF--HELTALADEVPNVKNLHVTALTD 175 (222)
T ss_pred CChHHHHHHHHH--HHHHHHhcCCCeEEEEech--HHHHHHhhcCCCeEEEEEEEEEe
Confidence 999999887543 3344443 48899999996 46789999999999999987764
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.4e-18 Score=183.22 Aligned_cols=76 Identities=24% Similarity=0.362 Sum_probs=68.7
Q ss_pred CCCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEe
Q 004537 295 GVSGGERKRVCIGNEIII----NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG 370 (746)
Q Consensus 295 ~LSGGerqRv~IA~aL~~----~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~ 370 (746)
.|||||+||+++|++++. +|+++++||||++||+.....+.+.|+++.+ +.|+|+++|++. +...+|++++|.
T Consensus 170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~-~~tii~isH~~~--~~~~~d~~~~l~ 246 (276)
T cd03241 170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSR-SHQVLCITHLPQ--VAAMADNHFLVE 246 (276)
T ss_pred hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEechHH--HHHhcCcEEEEE
Confidence 499999999999997654 9999999999999999999999999999865 789999999975 468899999998
Q ss_pred CCe
Q 004537 371 KGS 373 (746)
Q Consensus 371 ~G~ 373 (746)
+|+
T Consensus 247 ~~~ 249 (276)
T cd03241 247 KEV 249 (276)
T ss_pred Eec
Confidence 763
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.1e-18 Score=190.68 Aligned_cols=188 Identities=22% Similarity=0.368 Sum_probs=136.2
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCChhcc
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228 (746)
Q Consensus 149 ~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~ 228 (746)
.|.++||-.-. + ....+...+||.|++|--+.|.||||||||+|.++|+|. . |...|.... ...
T Consensus 481 gI~lenIpvIt------P-~~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggL-W-Pvy~g~L~~-------P~~ 544 (728)
T KOG0064|consen 481 GIILENIPVIT------P-AGDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGL-W-PVYNGLLSI-------PRP 544 (728)
T ss_pred ceEEecCceec------c-CcceeecceeEEecCCceEEEECCCCccHHHHHHHHhcc-C-cccCCeeec-------CCC
Confidence 36777775432 2 334689999999999999999999999999999999994 4 333343321 123
Q ss_pred CcEEEEecCCcCCCCCCHHHHHHHHHhcc--CCCCCcHHHHHHHHHHHHHHcCCCccccccccC----ccccCCCHHHHH
Q 004537 229 SKIGFVTQDDVLFPHLTVKETLTYAALLR--LPNTLTKQQKEKRAIDVINELGLERCQDTMIGG----SFVRGVSGGERK 302 (746)
Q Consensus 229 ~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~--~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~----~~~~~LSGGerq 302 (746)
.++-|+||.|..- .-|.||.+.|..... ..+..+ ++..+.+++.+.|++......|= ..-.-|||||||
T Consensus 545 ~~mFYIPQRPYms-~gtlRDQIIYPdS~e~~~~kg~~----d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQ 619 (728)
T KOG0064|consen 545 NNIFYIPQRPYMS-GGTLRDQIIYPDSSEQMKRKGYT----DQDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQ 619 (728)
T ss_pred cceEeccCCCccC-cCcccceeecCCcHHHHHhcCCC----HHHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHH
Confidence 4599999999876 458888877642100 001111 23345566666666554433321 112359999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhc
Q 004537 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHK 362 (746)
Q Consensus 303 Rv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~ 362 (746)
|+++||.+.++|+.-+|||.||+..+..+..+.+..++ .|.+.|-++|+|+ +++.
T Consensus 620 R~~mARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak~---~gi~llsithrps--lwk~ 674 (728)
T KOG0064|consen 620 RMGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKD---AGISLLSITHRPS--LWKY 674 (728)
T ss_pred HHHHHHHHhcCcchhhhhhhhcccccchHHHHHHHHHh---cCceEEEeecCcc--HHHH
Confidence 99999999999999999999999999999999988875 4999999999997 4554
|
|
| >COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.1e-18 Score=184.08 Aligned_cols=185 Identities=26% Similarity=0.430 Sum_probs=139.0
Q ss_pred cccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCC------CCCccEEEECCEeCChhccCcEEEEecCC-cCC
Q 004537 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME------PTVGGSITYNDHPYSKSLKSKIGFVTQDD-VLF 241 (746)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~------~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~-~l~ 241 (746)
+..+|+|+|++++||++++|+|+|||||||||++|+|.... .+++|.|.+--.. ..+.+|-+. .-|
T Consensus 395 eryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt-------~~a~iPge~Ep~f 467 (593)
T COG2401 395 ERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNT-------VSALIPGEYEPEF 467 (593)
T ss_pred eeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccc-------hhhccCccccccc
Confidence 45799999999999999999999999999999999984321 1356776653221 123444432 223
Q ss_pred CCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q 004537 242 PHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDE 321 (746)
Q Consensus 242 ~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~illLDE 321 (746)
..-|+.|.+.- .+.+ -..+.+++++.||.+-. .-....++||-|||.|..||.++...|.+++.||
T Consensus 468 ~~~tilehl~s-----~tGD------~~~AveILnraGlsDAv---lyRr~f~ELStGQKeR~KLAkllaerpn~~~iDE 533 (593)
T COG2401 468 GEVTILEHLRS-----KTGD------LNAAVEILNRAGLSDAV---LYRRKFSELSTGQKERAKLAKLLAERPNVLLIDE 533 (593)
T ss_pred CchhHHHHHhh-----ccCc------hhHHHHHHHhhccchhh---hhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhh
Confidence 35577776642 1111 12356889999997532 2223457899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhc-cCEEEEEeCCeEE
Q 004537 322 PTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHK-FDKLILLGKGSLL 375 (746)
Q Consensus 322 PTsgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~-~D~i~vL~~G~iv 375 (746)
--+.||+.++..+.+-|.+++++ |.|++++||+|.- +-.+ -|+++++.=|.+.
T Consensus 534 F~AhLD~~TA~rVArkiselaRe~giTlivvThrpEv-~~AL~PD~li~vgYg~v~ 588 (593)
T COG2401 534 FAAHLDELTAVRVARKISELAREAGITLIVVTHRPEV-GNALRPDTLILVGYGKVP 588 (593)
T ss_pred hhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHH-HhccCCceeEEeeccccc
Confidence 99999999999999999999865 9999999999752 3334 4898888766543
|
|
| >cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.2e-17 Score=163.71 Aligned_cols=75 Identities=28% Similarity=0.413 Sum_probs=68.0
Q ss_pred CCCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEe
Q 004537 295 GVSGGERKRVCIGNEIII----NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG 370 (746)
Q Consensus 295 ~LSGGerqRv~IA~aL~~----~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~ 370 (746)
+||+||+||++||++|.. +|+++++|||++|+|+.....+.+.+.++.++|.++|++||++. +.+.+|+++.|+
T Consensus 77 ~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~~--~~~~~d~~~~l~ 154 (162)
T cd03227 77 QLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPE--LAELADKLIHIK 154 (162)
T ss_pred eccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHH--HHHhhhhEEEEE
Confidence 499999999999999987 78999999999999999999999999998666889999999964 467799999996
Q ss_pred C
Q 004537 371 K 371 (746)
Q Consensus 371 ~ 371 (746)
.
T Consensus 155 ~ 155 (162)
T cd03227 155 K 155 (162)
T ss_pred E
Confidence 4
|
These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. |
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.5e-17 Score=197.15 Aligned_cols=134 Identities=24% Similarity=0.401 Sum_probs=105.8
Q ss_pred CCCHHHHHHHHHhccCCCCCcH------HHHHHHHHHHHHHcCCCcc-ccccccCccccCCCHHHHHHHHHHHHHhhCC-
Q 004537 243 HLTVKETLTYAALLRLPNTLTK------QQKEKRAIDVINELGLERC-QDTMIGGSFVRGVSGGERKRVCIGNEIIINP- 314 (746)
Q Consensus 243 ~lTV~E~l~~~~~~~~~~~~~~------~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p- 314 (746)
.|||.|.+.|...+..+..... .+..+++ +.+..+||.+. .+ +.+.+|||||+|||.||++|+.+|
T Consensus 434 ~~~v~~~~~~~~~l~~~~~~~~ia~~i~~~i~~rl-~~L~~vgL~~l~l~-----r~~~tLSGGE~QRv~LA~aL~~~~~ 507 (924)
T TIGR00630 434 ELSIREAHEFFNQLDLTPEEKKIAEEILKEIKERL-GFLIDVGLDYLTLS-----RAAGTLSGGEAQRIRLATQIGSGLT 507 (924)
T ss_pred cCCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH-HhHhhccccccccC-----CCcCcCCHHHHHHHHHHHHHhhCCC
Confidence 5899999998765432211000 0111122 34667787643 34 345789999999999999999986
Q ss_pred -CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEE------eCCeEEEecCHHHHH
Q 004537 315 -SLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL------GKGSLLYFGKASEAM 384 (746)
Q Consensus 315 -~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL------~~G~iv~~G~~~~~~ 384 (746)
+++||||||+|||+.....+++.|+++.++|.|||+++|++. .+ ..||+|++| ++|+|++.|+++++.
T Consensus 508 ~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~~-~i-~~aD~vi~LgpgaG~~~G~Iv~~g~~~el~ 582 (924)
T TIGR00630 508 GVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDEE-TI-RAADYVIDIGPGAGIHGGEVVASGTPEEIL 582 (924)
T ss_pred CcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HH-hhCCEEEEecccccCCCCEEeeccCHHHHh
Confidence 899999999999999999999999999888999999999975 34 689999999 899999999998874
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.8e-17 Score=197.23 Aligned_cols=135 Identities=23% Similarity=0.417 Sum_probs=108.3
Q ss_pred CCCHHHHHHHHHhccCCCC---Cc---HHHHHHHHHHHHHHcCCCcc-ccccccCccccCCCHHHHHHHHHHHHHhhCC-
Q 004537 243 HLTVKETLTYAALLRLPNT---LT---KQQKEKRAIDVINELGLERC-QDTMIGGSFVRGVSGGERKRVCIGNEIIINP- 314 (746)
Q Consensus 243 ~lTV~E~l~~~~~~~~~~~---~~---~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p- 314 (746)
.+||.|.+.|...+..+.. +. -.+..++++ .++.+||.+. .|+. +.+|||||||||.||++|..+|
T Consensus 436 ~~~v~~~~~~~~~~~~~~~~~~~a~~~~~~i~~rl~-~L~~vGL~~l~l~r~-----~~~LSgGE~QRv~LA~aL~~~~~ 509 (943)
T PRK00349 436 ELSIGEALEFFENLKLSEQEAKIAEPILKEIRERLK-FLVDVGLDYLTLSRS-----AGTLSGGEAQRIRLATQIGSGLT 509 (943)
T ss_pred cCcHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH-HhhccccCCCCCCCc-----hhhCCHHHHHHHHHHHHHhhCCC
Confidence 5899999998544322210 00 012233443 6788888754 4544 4689999999999999999997
Q ss_pred -CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEE------eCCeEEEecCHHHHHH
Q 004537 315 -SLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL------GKGSLLYFGKASEAMA 385 (746)
Q Consensus 315 -~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL------~~G~iv~~G~~~~~~~ 385 (746)
++++|||||+|||+.....+++.|+++.++|.|||+++|++.. + ..||+|++| ++|++++.|+++++..
T Consensus 510 ~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~~~-i-~~aD~vi~LgpgaG~~~G~iv~~g~~~e~~~ 585 (943)
T PRK00349 510 GVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDEDT-I-RAADYIVDIGPGAGVHGGEVVASGTPEEIMK 585 (943)
T ss_pred CcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-H-HhCCEEEEeccccCCCCCEEeeccCHHHHhc
Confidence 9999999999999999999999999998889999999999763 4 569999999 8999999999988743
|
|
| >cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.7e-16 Score=166.89 Aligned_cols=77 Identities=14% Similarity=0.207 Sum_probs=62.2
Q ss_pred ccCCCHHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhcc
Q 004537 293 VRGVSGGERKRVCIGNEII---------INPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKF 363 (746)
Q Consensus 293 ~~~LSGGerqRv~IA~aL~---------~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~ 363 (746)
..-+|+||||+++||++|+ .+|+++++||||++||+..+..+.+.|+++ +.+ ++++|+.. .+...|
T Consensus 181 ~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~---~q~-ii~~~~~~-~~~~~~ 255 (270)
T cd03242 181 ADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGR---VQT-FVTTTDLA-DFDALW 255 (270)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcC---CCE-EEEeCCch-hccchh
Confidence 3458999999999999985 799999999999999999999999999865 334 55555433 345556
Q ss_pred ---CEEEEEeCCeE
Q 004537 364 ---DKLILLGKGSL 374 (746)
Q Consensus 364 ---D~i~vL~~G~i 374 (746)
++++.+++|++
T Consensus 256 ~~~~~i~~l~~g~i 269 (270)
T cd03242 256 LRRAQIFRVDAGTL 269 (270)
T ss_pred ccCccEEEEeCcEE
Confidence 68999999986
|
When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.68 E-value=9e-18 Score=179.61 Aligned_cols=215 Identities=26% Similarity=0.365 Sum_probs=149.7
Q ss_pred ceEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh--
Q 004537 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (746)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (746)
..|.++|.+.+- ..+.++.|.|++|-.|..++++||||-||||||+-|+.|-..-+..=+|++..+.+-.
T Consensus 263 ~DIKiEnF~ISA--------~Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~ 334 (807)
T KOG0066|consen 263 MDIKIENFDISA--------QGKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADS 334 (807)
T ss_pred ccceeeeeeeec--------ccceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecC
Confidence 358888877654 4567999999999999999999999999999999999875432223455555443310
Q ss_pred ------hc---cCcEEEEecCCcC-----CCCCCHHHHHHHHH-hccCCCCCcHHHHHHHHHHHHHHcCCCccccccccC
Q 004537 226 ------SL---KSKIGFVTQDDVL-----FPHLTVKETLTYAA-LLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGG 290 (746)
Q Consensus 226 ------~~---~~~i~yv~Q~~~l-----~~~lTV~E~l~~~~-~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~ 290 (746)
-+ .++...+..++.| -...|+.|-+.-.+ .++. +.....++++..+|.-||.+.....
T Consensus 335 t~Ai~tvl~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELra---iGA~sAEarARRILAGLGFskEMQ~---- 407 (807)
T KOG0066|consen 335 TSAIDTVLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRA---IGADSAEARARRILAGLGFSKEMQE---- 407 (807)
T ss_pred cHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHH---hccccchhHHHHHHhhcCCChhHhc----
Confidence 00 1111221111111 12346666554322 2221 1122345567788888888754432
Q ss_pred ccccCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEe
Q 004537 291 SFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG 370 (746)
Q Consensus 291 ~~~~~LSGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~ 370 (746)
+....+|||-|-||++||||...|-+|.|||||+.||.....-+-+.|+.+. +|.++++||-+ .+-..|..|+-|+
T Consensus 408 rPt~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWk---KTLLIVSHDQg-FLD~VCtdIIHLD 483 (807)
T KOG0066|consen 408 RPTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWK---KTLLIVSHDQG-FLDSVCTDIIHLD 483 (807)
T ss_pred CCccccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhh---heeEEEecccc-hHHHHHHHHhhhh
Confidence 3345799999999999999999999999999999999988877777777764 59999999965 4778899999999
Q ss_pred CCeEE-EecCHH
Q 004537 371 KGSLL-YFGKAS 381 (746)
Q Consensus 371 ~G~iv-~~G~~~ 381 (746)
+-++- |.|...
T Consensus 484 ~qkLhyYrGNY~ 495 (807)
T KOG0066|consen 484 NQKLHYYRGNYT 495 (807)
T ss_pred hhhhhhhcchHH
Confidence 87764 456543
|
|
| >cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.8e-16 Score=161.04 Aligned_cols=154 Identities=15% Similarity=0.135 Sum_probs=103.8
Q ss_pred eEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEecCCcCCCCCCHHHHHHHHHh
Q 004537 176 ITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAAL 255 (746)
Q Consensus 176 vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~ 255 (746)
.++++.+|++++|+|||||||||||++|++.... ...|.. . ...+..+++..|.. ..+...+++
T Consensus 22 ~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~-~~~g~~------~-~~~~~~i~~~dqi~---~~~~~~d~i----- 85 (202)
T cd03243 22 NDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLL-AQIGCF------V-PAESASIPLVDRIF---TRIGAEDSI----- 85 (202)
T ss_pred eeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHH-HHcCCC------c-cccccccCCcCEEE---EEecCcccc-----
Confidence 3445558999999999999999999999953211 112211 1 01122344433321 111111110
Q ss_pred ccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Q 004537 256 LRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIV 335 (746)
Q Consensus 256 ~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~ 335 (746)
+. ....++++++ |++.+.+++.+|+++++||||+|||+.....+.
T Consensus 86 -----------------------------~~-----~~s~~~~e~~-~l~~i~~~~~~~~llllDEp~~gld~~~~~~l~ 130 (202)
T cd03243 86 -----------------------------SD-----GRSTFMAELL-ELKEILSLATPRSLVLIDELGRGTSTAEGLAIA 130 (202)
T ss_pred -----------------------------cC-----CceeHHHHHH-HHHHHHHhccCCeEEEEecCCCCCCHHHHHHHH
Confidence 00 1134565555 577778889999999999999999999888876
Q ss_pred H-HHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHH
Q 004537 336 Q-MLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (746)
Q Consensus 336 ~-~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~ 382 (746)
. .++.+.+.+.++|++||++ ++.+.+|++..++.|++...++.++
T Consensus 131 ~~ll~~l~~~~~~vi~~tH~~--~~~~~~~~~~~l~~~~~~~~~~~~~ 176 (202)
T cd03243 131 YAVLEHLLEKGCRTLFATHFH--ELADLPEQVPGVKNLHMEELITTGG 176 (202)
T ss_pred HHHHHHHHhcCCeEEEECChH--HHHHHhhcCCCeEEEEEEEEecCCe
Confidence 5 4666766789999999985 4677899999999999998886544
|
Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru |
| >cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.62 E-value=6.3e-16 Score=157.25 Aligned_cols=136 Identities=21% Similarity=0.245 Sum_probs=98.4
Q ss_pred cccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEE-EEecCCcCCCCCCHH
Q 004537 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIG-FVTQDDVLFPHLTVK 247 (746)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~-yv~Q~~~l~~~lTV~ 247 (746)
++.+.+|+++++++|++++|+||||+|||||++++++.. ...++| +| |..++.+++.
T Consensus 15 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~-------------------~la~~G~~v---pa~~~~l~~~ 72 (204)
T cd03282 15 KNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLA-------------------IMAQIGCFV---PAEYATLPIF 72 (204)
T ss_pred CcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHH-------------------HHHHcCCCc---chhhcCccCh
Confidence 457999999999999999999999999999999998732 111222 33 3334456666
Q ss_pred HHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 004537 248 ETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLD 327 (746)
Q Consensus 248 E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~illLDEPTsgLD 327 (746)
|+|... ++..+..+. ....+|+|++|+ ..+.+++.+|++++||||++|+|
T Consensus 73 d~I~~~------------------------~~~~d~~~~-----~~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~ 122 (204)
T cd03282 73 NRLLSR------------------------LSNDDSMER-----NLSTFASEMSET-AYILDYADGDSLVLIDELGRGTS 122 (204)
T ss_pred hheeEe------------------------cCCccccch-----hhhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCC
Confidence 666422 122211111 124689999865 55667889999999999999999
Q ss_pred HHHHHHH-HHHHHHHHHCCCEEEEEecCCC
Q 004537 328 STTALRI-VQMLQDIAEAGKTVVTTIHQPS 356 (746)
Q Consensus 328 ~~~~~~i-~~~L~~l~~~g~Tvi~~~H~~~ 356 (746)
+.....+ ...++.+.+.|.++|++||+..
T Consensus 123 ~~~~~~l~~~il~~l~~~~~~~i~~TH~~~ 152 (204)
T cd03282 123 SADGFAISLAILECLIKKESTVFFATHFRD 152 (204)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEECChHH
Confidence 9876655 4567777777999999999853
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >cd03284 ABC_MutS1 MutS1 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.1e-15 Score=154.92 Aligned_cols=158 Identities=20% Similarity=0.172 Sum_probs=110.0
Q ss_pred cccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEecCCcCCCCCCHHH
Q 004537 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKE 248 (746)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTV~E 248 (746)
++.+.+|++++.++ ++++|.||||+|||||||.+++...- |+ .|.++.. .+..++++.| +|+.+++.|
T Consensus 17 ~~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l----~~---~g~~vp~-~~~~i~~~~~---i~~~~~~~~ 84 (216)
T cd03284 17 EPFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALL----AQ---IGSFVPA-SKAEIGVVDR---IFTRIGASD 84 (216)
T ss_pred CceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHH----hc---cCCeecc-ccceecceee---EeccCCchh
Confidence 34689999999987 99999999999999999999863221 21 1222221 2356777765 567778877
Q ss_pred HHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCH--HHHHHHHHHHHHhhCCCEEEEeCC---C
Q 004537 249 TLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSG--GERKRVCIGNEIIINPSLLFLDEP---T 323 (746)
Q Consensus 249 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSG--GerqRv~IA~aL~~~p~illLDEP---T 323 (746)
++..+. |. .|+++++-+...+.+|++++|||| |
T Consensus 85 ~ls~g~------------------------------------------s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt 122 (216)
T cd03284 85 DLAGGR------------------------------------------STFMVEMVETANILNNATERSLVLLDEIGRGT 122 (216)
T ss_pred hhccCc------------------------------------------chHHHHHHHHHHHHHhCCCCeEEEEecCCCCC
Confidence 765431 11 133444444444679999999999 8
Q ss_pred CCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHH
Q 004537 324 SGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (746)
Q Consensus 324 sgLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (746)
+++|.... ....++.+.+. +.|+|++||+. ++.+++|++.-+++|++...+..+++.
T Consensus 123 ~~lD~~~~--~~~il~~l~~~~~~~vi~~TH~~--~l~~l~~~~~~v~~~~~~~~~~~~~l~ 180 (216)
T cd03284 123 STYDGLSI--AWAIVEYLHEKIGAKTLFATHYH--ELTELEGKLPRVKNFHVAVKEKGGGVV 180 (216)
T ss_pred ChHHHHHH--HHHHHHHHHhccCCcEEEEeCcH--HHHHHhhcCCCeEEEEEEEEeeCCeEE
Confidence 88887652 23344555555 88999999995 577888988888899988877666543
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam |
| >KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.2e-14 Score=156.10 Aligned_cols=178 Identities=25% Similarity=0.367 Sum_probs=134.0
Q ss_pred cccceeceEEEEeCCe-----EEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEecCCcCCCC
Q 004537 169 EKDILNGITGSVNPGE-----VLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPH 243 (746)
Q Consensus 169 ~~~iL~~vs~~i~~Ge-----~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~ 243 (746)
.+.-+.+..+.|+.|+ ++..+|.||.|||||+++++|++. |...|+|-. -.++|=||.-.-=..
T Consensus 348 m~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~-pd~~~e~p~----------lnVSykpqkispK~~ 416 (592)
T KOG0063|consen 348 MKKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLK-PDEGGEIPV----------LNVSYKPQKISPKRE 416 (592)
T ss_pred ceeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCC-CCccCcccc----------cceeccccccCcccc
Confidence 4456778888888874 789999999999999999999764 444455432 246777876433234
Q ss_pred CCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 004537 244 LTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPT 323 (746)
Q Consensus 244 lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~illLDEPT 323 (746)
-|||+.+.--.+. .-....-+.++++-|.+++..|..+ .+|||||.|||+||..|=+.+++.+.|||.
T Consensus 417 ~tvR~ll~~kIr~-------ay~~pqF~~dvmkpL~ie~i~dqev-----q~lSggelQRval~KOGGKpAdvYliDEps 484 (592)
T KOG0063|consen 417 GTVRQLLHTKIRD-------AYMHPQFVNDVMKPLQIENIIDQEV-----QGLSGGELQRVALALCLGKPADVYLIDEPS 484 (592)
T ss_pred chHHHHHHHHhHh-------hhcCHHHHHhhhhhhhHHHHHhHHh-----hcCCchhhHHHHHHHhcCCCCceEEecCch
Confidence 5899876532110 0112245678888888887777554 689999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHH-HCCCEEEEEecCCChHHHhccCEEEEEe
Q 004537 324 SGLDSTTALRIVQMLQDIA-EAGKTVVTTIHQPSSRLFHKFDKLILLG 370 (746)
Q Consensus 324 sgLD~~~~~~i~~~L~~l~-~~g~Tvi~~~H~~~~~i~~~~D~i~vL~ 370 (746)
+-||++.+..--+.+++.. +.++|-.++-||.--+. -++||+++..
T Consensus 485 AylDSeQRi~AskvikRfilhakktafvVEhdfImaT-Yladrvivf~ 531 (592)
T KOG0063|consen 485 AYLDSEQRIIASKVIKRFILHAKKTAFVVEHDFIMAT-YLADRVIVFE 531 (592)
T ss_pred hhcChHHHHHHHHHHHHHHHhccchhhhhhhHHHHHH-hhcceeEEEe
Confidence 9999999999888888864 45889999999965433 3578887764
|
|
| >TIGR02858 spore_III_AA stage III sporulation protein AA | Back alignment and domain information |
|---|
Probab=99.56 E-value=1e-14 Score=154.16 Aligned_cols=139 Identities=20% Similarity=0.265 Sum_probs=95.5
Q ss_pred eEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCC-----hhccCcEEEEecCCcCCCCCCHHHHHHHHHhccC
Q 004537 184 EVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS-----KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRL 258 (746)
Q Consensus 184 e~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~-----~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~ 258 (746)
.-++|+||||||||||+++|+|.+. +.+|+|.++|+++. .++...+++++|++. .+.++|.||..
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~--~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~-~~r~~v~~~~~------- 181 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILS--TGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDV-GIRTDVLDGCP------- 181 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccC--CCCceEEECCEEeecchhHHHHHHHhcccccccc-cccccccccch-------
Confidence 5789999999999999999998653 45899999999874 234456778888653 34455544311
Q ss_pred CCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 004537 259 PNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQML 338 (746)
Q Consensus 259 ~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L 338 (746)
+. .|. ..+++ ..+|+++++|||++ ...+...+
T Consensus 182 -----k~--------------------------------~~~---~~~i~--~~~P~villDE~~~------~e~~~~l~ 213 (270)
T TIGR02858 182 -----KA--------------------------------EGM---MMLIR--SMSPDVIVVDEIGR------EEDVEALL 213 (270)
T ss_pred -----HH--------------------------------HHH---HHHHH--hCCCCEEEEeCCCc------HHHHHHHH
Confidence 00 011 12223 35999999999974 33444555
Q ss_pred HHHHHCCCEEEEEecCCChHHH------------hccCEEEEEeCCeEEEecCHHHH
Q 004537 339 QDIAEAGKTVVTTIHQPSSRLF------------HKFDKLILLGKGSLLYFGKASEA 383 (746)
Q Consensus 339 ~~l~~~g~Tvi~~~H~~~~~i~------------~~~D~i~vL~~G~iv~~G~~~~~ 383 (746)
+.+ +.|+|+|+++|++..+-. ..|||+++|++|+ ..|+++++
T Consensus 214 ~~~-~~G~~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~~--~~g~~~~i 267 (270)
T TIGR02858 214 EAL-HAGVSIIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRRK--GPGTVEAV 267 (270)
T ss_pred HHH-hCCCEEEEEechhHHHHHHhChHHHHHHhcCceEEEEEEecCC--CCCceeec
Confidence 554 369999999998543222 5689999999887 66666544
|
Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation. |
| >PRK00064 recF recombination protein F; Reviewed | Back alignment and domain information |
|---|
Probab=99.46 E-value=1e-12 Score=145.13 Aligned_cols=77 Identities=21% Similarity=0.290 Sum_probs=64.7
Q ss_pred cCCCHHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhc--
Q 004537 294 RGVSGGERKRVCIGNEII---------INPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHK-- 362 (746)
Q Consensus 294 ~~LSGGerqRv~IA~aL~---------~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~-- 362 (746)
..+|.||+|++.||+.|+ .+|+|++||||+++||+..+..+++.|.++ +..+++++|++.. +...
T Consensus 272 ~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~---~~qv~it~~~~~~-~~~~~~ 347 (361)
T PRK00064 272 DFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL---GAQVFITTTDLED-LADLLE 347 (361)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc---CCEEEEEcCChhh-hhhhhc
Confidence 469999999999999885 799999999999999999999999988754 4578899998542 3333
Q ss_pred cCEEEEEeCCeE
Q 004537 363 FDKLILLGKGSL 374 (746)
Q Consensus 363 ~D~i~vL~~G~i 374 (746)
.++++.+++|++
T Consensus 348 ~~~i~~v~~G~i 359 (361)
T PRK00064 348 NAKIFHVEQGKI 359 (361)
T ss_pred cCcEEEEeCCEE
Confidence 357999999987
|
|
| >smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family | Back alignment and domain information |
|---|
Probab=99.44 E-value=8.8e-14 Score=139.49 Aligned_cols=78 Identities=18% Similarity=0.147 Sum_probs=57.2
Q ss_pred cCCCHHHHHHHHHHHHHh--hCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHHC-CCEEEEEecCCChHHHhccCEEEEE
Q 004537 294 RGVSGGERKRVCIGNEII--INPSLLFLDEPTSGLDSTTALRIV-QMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILL 369 (746)
Q Consensus 294 ~~LSGGerqRv~IA~aL~--~~p~illLDEPTsgLD~~~~~~i~-~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~i~vL 369 (746)
..+|+|++| +++++. .+|+++++|||++|+|+.....+. ..++.+.++ +.++|++||++ ++.+.+|+.--+
T Consensus 60 s~fs~~~~~---l~~~l~~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~--~l~~~~~~~~~v 134 (185)
T smart00534 60 STFMVEMKE---TANILKNATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYH--ELTKLADEHPGV 134 (185)
T ss_pred cHHHHHHHH---HHHHHHhCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHH--HHHHHhhcCccc
Confidence 468887776 444444 499999999999999999877765 556777764 88999999996 467778754444
Q ss_pred eCCeEEE
Q 004537 370 GKGSLLY 376 (746)
Q Consensus 370 ~~G~iv~ 376 (746)
.+++...
T Consensus 135 ~~~~~~~ 141 (185)
T smart00534 135 RNLHMSA 141 (185)
T ss_pred eEEEEEE
Confidence 4454443
|
|
| >PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression [] | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.7e-13 Score=140.81 Aligned_cols=88 Identities=27% Similarity=0.480 Sum_probs=64.8
Q ss_pred HHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC
Q 004537 269 KRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEII----INPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA 344 (746)
Q Consensus 269 ~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~----~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~ 344 (746)
+.+.+.+...++.. ..+|||||.+++||.-|+ .+.++++||||.++||...+..+.+.|+++.+
T Consensus 121 ~~~~~~l~~~~i~~-----------~~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~- 188 (220)
T PF02463_consen 121 KDLEELLPEVGISP-----------EFLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSK- 188 (220)
T ss_dssp HHHHHHHHCTTTTT-----------TGS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTT-
T ss_pred cccccccccccccc-----------cccccccccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence 34555666555542 269999999999997664 46799999999999999999999999999865
Q ss_pred CCEEEEEecCCChHHHhccCEEEEEe
Q 004537 345 GKTVVTTIHQPSSRLFHKFDKLILLG 370 (746)
Q Consensus 345 g~Tvi~~~H~~~~~i~~~~D~i~vL~ 370 (746)
+.-+|++||++ ..+..+|+.+-+.
T Consensus 189 ~~Q~ii~Th~~--~~~~~a~~~~~v~ 212 (220)
T PF02463_consen 189 QSQFIITTHNP--EMFEDADKLIGVT 212 (220)
T ss_dssp TSEEEEE-S-H--HHHTT-SEEEEEE
T ss_pred ccccccccccc--ccccccccccccc
Confidence 57799999995 4788999887664
|
The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A .... |
| >cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.7e-12 Score=133.16 Aligned_cols=134 Identities=17% Similarity=0.197 Sum_probs=87.6
Q ss_pred cceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEecCCcCCC-CCCHHHH
Q 004537 171 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFP-HLTVKET 249 (746)
Q Consensus 171 ~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~-~lTV~E~ 249 (746)
.|-+|+++.=..+.+++|.||||+|||||||.++....- ...|...... ...++|..|....+. ..++.++
T Consensus 17 ~vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~a~-------~~~~~~~d~i~~~l~~~~si~~~ 88 (213)
T cd03281 17 FVPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVPAD-------SATIGLVDKIFTRMSSRESVSSG 88 (213)
T ss_pred eEcceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeEcC-------CcEEeeeeeeeeeeCCccChhhc
Confidence 455566554222379999999999999999999831110 1235443221 234677777532221 1111111
Q ss_pred HHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 004537 250 LTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDST 329 (746)
Q Consensus 250 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~illLDEPTsgLD~~ 329 (746)
+ +.. .-|.||++++++++.+|++++||||++|+|+.
T Consensus 89 ~------------------------------S~f--------------~~el~~l~~~l~~~~~~slvllDE~~~gtd~~ 124 (213)
T cd03281 89 Q------------------------------SAF--------------MIDLYQVSKALRLATRRSLVLIDEFGKGTDTE 124 (213)
T ss_pred c------------------------------chH--------------HHHHHHHHHHHHhCCCCcEEEeccccCCCCHH
Confidence 0 100 23689999999999999999999999999997
Q ss_pred HHHHH-HHHHHHHHHC---CCEEEEEecCCC
Q 004537 330 TALRI-VQMLQDIAEA---GKTVVTTIHQPS 356 (746)
Q Consensus 330 ~~~~i-~~~L~~l~~~---g~Tvi~~~H~~~ 356 (746)
....+ ...++++.+. +.++|++||++.
T Consensus 125 ~~~~~~~ail~~l~~~~~~~~~vli~TH~~~ 155 (213)
T cd03281 125 DGAGLLIATIEHLLKRGPECPRVIVSTHFHE 155 (213)
T ss_pred HHHHHHHHHHHHHHhcCCCCcEEEEEcChHH
Confidence 65444 5688888764 248999999964
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.7e-13 Score=122.89 Aligned_cols=72 Identities=19% Similarity=0.125 Sum_probs=61.0
Q ss_pred ccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh----hccCcEEEEecCCcCCCCCC
Q 004537 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHLT 245 (746)
Q Consensus 170 ~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~----~~~~~i~yv~Q~~~l~~~lT 245 (746)
+.+|+++++++++|++++|+||||||||||++++. +|++.++|.++.. ..++.++|++|+ +|. .|
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~--------~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf~-~t 70 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI--------KRKHRLVGDDNVEIREDSKDELIGRNPEL--GLE-IR 70 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh--------CCeEEEeeEeHHHhhhhhcCCEEEEechh--cch-hh
Confidence 46899999999999999999999999999999985 5889999998742 344557777777 554 59
Q ss_pred HHHHHHH
Q 004537 246 VKETLTY 252 (746)
Q Consensus 246 V~E~l~~ 252 (746)
++|||.+
T Consensus 71 i~~Ni~~ 77 (107)
T cd00820 71 LRLNIFL 77 (107)
T ss_pred HHhhcee
Confidence 9999987
|
It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural |
| >TIGR01069 mutS2 MutS2 family protein | Back alignment and domain information |
|---|
Probab=99.37 E-value=8e-13 Score=158.07 Aligned_cols=131 Identities=21% Similarity=0.250 Sum_probs=90.8
Q ss_pred ceEEEEeCC-eEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEecCCc-CCCCCCHHHHHHH
Q 004537 175 GITGSVNPG-EVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDV-LFPHLTVKETLTY 252 (746)
Q Consensus 175 ~vs~~i~~G-e~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~-l~~~lTV~E~l~~ 252 (746)
.+|+.+.++ ++++|.||||+|||||||+|+|...- ...| .+||.... .+ .+.+.+.
T Consensus 313 p~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~-aq~G-----------------~~Vpa~~~~~~---~~~d~i~- 370 (771)
T TIGR01069 313 PFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALM-FQSG-----------------IPIPANEHSEI---PYFEEIF- 370 (771)
T ss_pred eceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHH-HHhC-----------------CCccCCccccc---cchhhee-
Confidence 378888887 89999999999999999999984211 1122 13333321 11 1111110
Q ss_pred HHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 004537 253 AALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTAL 332 (746)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~ 332 (746)
. .+..+ + .+. .....+|+|+++++.|++.+ .+|+++|+|||++|+|+....
T Consensus 371 ~-------~i~~~---~---si~---------------~~LStfS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~~eg~ 421 (771)
T TIGR01069 371 A-------DIGDE---Q---SIE---------------QNLSTFSGHMKNISAILSKT-TENSLVLFDELGAGTDPDEGS 421 (771)
T ss_pred e-------ecChH---h---HHh---------------hhhhHHHHHHHHHHHHHHhc-CCCcEEEecCCCCCCCHHHHH
Confidence 0 00000 0 011 11247999999999998876 799999999999999999999
Q ss_pred HH-HHHHHHHHHCCCEEEEEecCCC
Q 004537 333 RI-VQMLQDIAEAGKTVVTTIHQPS 356 (746)
Q Consensus 333 ~i-~~~L~~l~~~g~Tvi~~~H~~~ 356 (746)
.+ ...|+.+.+.|.++|++||+..
T Consensus 422 ala~aiLe~l~~~g~~viitTH~~e 446 (771)
T TIGR01069 422 ALAISILEYLLKQNAQVLITTHYKE 446 (771)
T ss_pred HHHHHHHHHHHhcCCEEEEECChHH
Confidence 88 5778888777999999999964
|
Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function. |
| >TIGR01247 drrB daunorubicin resistance ABC transporter membrane protein | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.2e-10 Score=118.92 Aligned_cols=158 Identities=14% Similarity=0.150 Sum_probs=121.7
Q ss_pred hhHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 004537 568 ERAMLSKERAADMYRLSAYFLARTTSDLPLNLVLPVLFLVIVYFMAGLRMGAGPFFLSMLTVFLSIVAAQGLGLAIGAIL 647 (746)
Q Consensus 568 eR~v~~rEr~~g~Y~~~ay~la~~l~~lP~~~~~~~if~~ivY~m~gl~~~~~~Ff~f~l~~~l~~~~~~slg~~i~a~~ 647 (746)
|+.++.|=+.. =.++..|+++|.+..++..++..+++..+.|++.+++. ..++.+++..++..++..++|.++++..
T Consensus 75 ~~g~~~~~~~~-P~~~~~~~l~~~l~~~~~~~~~~~i~~~i~~~~~~~~~--~~~~~~~~~~~l~~~~~~~lg~~l~~~~ 151 (236)
T TIGR01247 75 QFGFLKEILVA-PASRVEMIVGRILGGSTVAMIQGAIILALSFIVAILKP--SGVIPTLVLAFIVGVALSGLGVAIAARM 151 (236)
T ss_pred HhCHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444443332 33678999999999999999999999999998877654 3455455555666778899999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHhhcccC--CCccchhhhhccCHHHHHHHHHHHHHcCCCCCCCCCcccCchhhhHHHHHHH
Q 004537 648 MDLKKATTLASVTIMTFMLAGGYFVQ--EVPVFISWIRYMSFNFHTYKILLKIQYADISPIVNGMRTDSGFREVCALVAM 725 (746)
Q Consensus 648 ~~~~~A~~~~~~~~~~~~lf~Gf~i~--~ip~~~~Wl~yiS~~~yafeal~~nef~~~~~~~~g~~~~~~~~~~~iL~~~ 725 (746)
+|.+.++.+.+++..+++++||.+.| .+|+|++|+.|++|.+|+.|++-..-.++ ....+.+.++++|+.+
T Consensus 152 ~~~~~~~~i~~~~~~~l~~lsG~~~P~~~~P~~~~~i~~~~P~~~~~~~~r~~~~~~-------~~~~~~~~~~~~l~~~ 224 (236)
T TIGR01247 152 DSMEGFQIIMSMLMLPMFFLSGAFYPITTMPAWMQGLAKINPLTYAVDGARYYLAGV-------SPTFPLEQDLLVLTLL 224 (236)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhhcCHHhCHHHHHHHHHHCcHHHHHHHHHHHHhCC-------CcccchHHHHHHHHHH
Confidence 99999988898988999999999998 79999999999999999999965543321 1123344578888888
Q ss_pred HHHHHHHHHH
Q 004537 726 VFGYRLLAYL 735 (746)
Q Consensus 726 ~~~f~~l~~~ 735 (746)
.+++.+++..
T Consensus 225 ~~~~~~l~~~ 234 (236)
T TIGR01247 225 AVIFVGIAAV 234 (236)
T ss_pred HHHHHHHHHH
Confidence 8888777654
|
This model describes daunorubicin resistance ABC transporter, membrane associated protein in bacteria and archaea. The protein associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.5e-12 Score=133.44 Aligned_cols=173 Identities=17% Similarity=0.228 Sum_probs=105.1
Q ss_pred EEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEEC--CEe-CC-hhccC---cEEEEecCCcCCCCCCHHHHH
Q 004537 178 GSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYN--DHP-YS-KSLKS---KIGFVTQDDVLFPHLTVKETL 250 (746)
Q Consensus 178 ~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~--G~~-~~-~~~~~---~i~yv~Q~~~l~~~lTV~E~l 250 (746)
+.+..||.++|+||+|+|||||++.|.+.......+..+.+- +.+ .. .++.+ .+-++.+-+. +..+.+
T Consensus 11 ~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~-----~~~~~~ 85 (249)
T cd01128 11 APIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDE-----PPERHV 85 (249)
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCC-----CHHHHH
Confidence 368899999999999999999999999754321111222221 111 11 11111 1222333222 111111
Q ss_pred HHHHhccCCCCCcHHHHHHHHHHHHHHcC------------CCccccccccCccccCCCHHH--------HHHHHHHHHH
Q 004537 251 TYAALLRLPNTLTKQQKEKRAIDVINELG------------LERCQDTMIGGSFVRGVSGGE--------RKRVCIGNEI 310 (746)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lg------------L~~~~~~~vg~~~~~~LSGGe--------rqRv~IA~aL 310 (746)
.... ...+.++... .-| +.+..++..| ...+.+|||+ +||+++||++
T Consensus 86 ~~~~-----------~~~~~a~~~~-~~G~~vll~iDei~r~a~a~~ev~~-~~G~~~sgG~~~~~~~~~~q~~~~Ar~~ 152 (249)
T cd01128 86 QVAE-----------MVLEKAKRLV-EHGKDVVILLDSITRLARAYNTVVP-PSGKILSGGVDANALHKPKRFFGAARNI 152 (249)
T ss_pred HHHH-----------HHHHHHHHHH-HCCCCEEEEEECHHHhhhhhhhccc-cCCCCCCCCcChhhhhhhHHHHHHhcCC
Confidence 1000 0000111111 001 1222344333 2335689999 9999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHH-HHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeE
Q 004537 311 IINPSLLFLDEPTSGLDSTTALR-IVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (746)
Q Consensus 311 ~~~p~illLDEPTsgLD~~~~~~-i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~i 374 (746)
..+++|.+| ||+.+|+.+... ++ +.++...+.|.|+.+|++.. ...+|.|.+|+.|++
T Consensus 153 ~~~gsIt~l--~T~~~d~~~~~~~~i--~~~~~~~~~~~ivls~~la~--~~~~paI~vl~s~sr 211 (249)
T cd01128 153 EEGGSLTII--ATALVDTGSRMDDVI--FEEFKGTGNMELVLDRRLAE--RRIFPAIDILKSGTR 211 (249)
T ss_pred CCCCceEEe--eeheecCCCcccchH--HHHHhcCCCcEEEEchHHhh--CCCCCeEEEcCCCCc
Confidence 999999999 999999766654 54 55555457899999999864 578999999999987
|
It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain. |
| >PTZ00132 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.5e-12 Score=131.57 Aligned_cols=44 Identities=20% Similarity=0.381 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCC-----CCCCHHHHHHHHHHHHHHHH
Q 004537 300 ERKRVCIGNEIIINPSLLFLDEPT-----SGLDSTTALRIVQMLQDIAE 343 (746)
Q Consensus 300 erqRv~IA~aL~~~p~illLDEPT-----sgLD~~~~~~i~~~L~~l~~ 343 (746)
|++++.||++++.+|+++++|||| +|||+.++..+.+.++++++
T Consensus 157 ~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~~ 205 (215)
T PTZ00132 157 EKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAAN 205 (215)
T ss_pred HHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999 99999999999999999875
|
|
| >TIGR03062 pip_yhgE_Cterm YhgE/Pip C-terminal domain | Back alignment and domain information |
|---|
Probab=99.31 E-value=7.1e-11 Score=120.24 Aligned_cols=148 Identities=14% Similarity=0.101 Sum_probs=120.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004537 582 RLSAYFLARTTSDLPLNLVLPVLFLVIVYFMAGLRMGAGPFFLSMLTVFLSIVAAQGLGLAIGAILMDLKKATTLASVTI 661 (746)
Q Consensus 582 ~~~ay~la~~l~~lP~~~~~~~if~~ivY~m~gl~~~~~~Ff~f~l~~~l~~~~~~slg~~i~a~~~~~~~A~~~~~~~~ 661 (746)
+...++++|.+..++..+++.+++..+.|++.|++.. +++.+++.+++..++..++|.++++..++...+. ..+.+
T Consensus 58 ~~~~~~~~k~~~~~~~~~~~~~~~~~i~~~~~g~~~~--~~~~~~l~~~l~~~~~~~lg~~l~~~~~~~~~~~--~~~~~ 133 (208)
T TIGR03062 58 RSWRIALAKLLPGGLIGVLQAIILYGVLILGLGLDPA--HPPATFGFAILTSLTFMAIIQFLVALFGNVGRFL--ALVLL 133 (208)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccC--CHHHHHHHHHHHHHHHHHHHHHHHHHhCcchHHH--HHHHH
Confidence 4467799999999999999999999999999999864 4666777778888899999999999998765443 33344
Q ss_pred HHHHHHhhcccC--CCccchhhhhccCHHHHHHHHHHHHHcCCCCCCCCCcccCchhhhHHHHHHHHHHHHHHHHHHHHH
Q 004537 662 MTFMLAGGYFVQ--EVPVFISWIRYMSFNFHTYKILLKIQYADISPIVNGMRTDSGFREVCALVAMVFGYRLLAYLSLRK 739 (746)
Q Consensus 662 ~~~~lf~Gf~i~--~ip~~~~Wl~yiS~~~yafeal~~nef~~~~~~~~g~~~~~~~~~~~iL~~~~~~f~~l~~~~L~~ 739 (746)
.+.++++|.+.| .+|.|++|+.|++|.+|+.+++-...+++ .....+.++++|+++.+++.++++...|+
T Consensus 134 ~~~~~~sG~~~P~~~~P~~~~~i~~~~P~t~~~~~~r~~~~~~--------~~~~~~~~~~~L~~~~~v~~~la~~~~~~ 205 (208)
T TIGR03062 134 VLQLGSSGGTFPIELLPAFFQAIHPFLPMTYSVNGLRQLISGG--------NDGTLWQAVAVLLLILVVFLALSLLSARR 205 (208)
T ss_pred HHHHccCCCccchhhCHHHHHHhhhhCcHHHHHHHHHHHHhCC--------cHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 566667887787 79999999999999999999998777643 12234668889999999999999988876
Q ss_pred hh
Q 004537 740 MK 741 (746)
Q Consensus 740 ~~ 741 (746)
.+
T Consensus 206 ~~ 207 (208)
T TIGR03062 206 KR 207 (208)
T ss_pred hc
Confidence 54
|
This family contains the C-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03061, represents the conserved N-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057. |
| >cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.5e-11 Score=125.06 Aligned_cols=134 Identities=19% Similarity=0.220 Sum_probs=88.4
Q ss_pred ccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEecCCcCCCCCCHHHH
Q 004537 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKET 249 (746)
Q Consensus 170 ~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~ 249 (746)
+.+.+|+++.+++|++++|.||||+||||+++++++.... ...|...... .-.++|..| ++..+...|+
T Consensus 18 ~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~l-a~~G~~v~a~-------~~~~~~~~~---i~~~~~~~d~ 86 (222)
T cd03287 18 SFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIM-AQIGSFVPAS-------SATLSIFDS---VLTRMGASDS 86 (222)
T ss_pred CEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHH-HhCCCEEEcC-------ceEEeccce---EEEEecCccc
Confidence 5689999999999999999999999999999999983221 2345543221 112333322 1111111111
Q ss_pred HHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCC--HHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 004537 250 LTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVS--GGERKRVCIGNEIIINPSLLFLDEPTSGLD 327 (746)
Q Consensus 250 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS--GGerqRv~IA~aL~~~p~illLDEPTsgLD 327 (746)
+. .++| ..|-+|++-...-+.+|+++|||||.+|.|
T Consensus 87 ~~------------------------------------------~~~StF~~e~~~~~~il~~~~~~sLvllDE~~~gT~ 124 (222)
T cd03287 87 IQ------------------------------------------HGMSTFMVELSETSHILSNCTSRSLVILDELGRGTS 124 (222)
T ss_pred cc------------------------------------------cccchHHHHHHHHHHHHHhCCCCeEEEEccCCCCCC
Confidence 10 0112 224555555555667899999999999988
Q ss_pred HHHHHHH-HHHHHHHHHC-CCEEEEEecCCC
Q 004537 328 STTALRI-VQMLQDIAEA-GKTVVTTIHQPS 356 (746)
Q Consensus 328 ~~~~~~i-~~~L~~l~~~-g~Tvi~~~H~~~ 356 (746)
+.....+ ...++.+.+. +.++|++||++.
T Consensus 125 ~~d~~~i~~~il~~l~~~~~~~~i~~TH~~~ 155 (222)
T cd03287 125 THDGIAIAYATLHYLLEEKKCLVLFVTHYPS 155 (222)
T ss_pred hhhHHHHHHHHHHHHHhccCCeEEEEcccHH
Confidence 7776664 5667777765 889999999964
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.27 E-value=9.2e-12 Score=134.25 Aligned_cols=170 Identities=27% Similarity=0.397 Sum_probs=118.0
Q ss_pred EeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh--------h------------ccC--cEEEEecC
Q 004537 180 VNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--------S------------LKS--KIGFVTQD 237 (746)
Q Consensus 180 i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~--------~------------~~~--~i~yv~Q~ 237 (746)
-+||++.+++|.||-||||-+++++|++. |+. |.- .++-+..+ + ++. +.-||.|-
T Consensus 97 prpg~vlglvgtngigkstAlkilagk~k-pnl-g~~-~~pp~w~~il~~frgselq~yftk~le~~lk~~~kpQyvd~i 173 (592)
T KOG0063|consen 97 PRPGQVLGLVGTNGIGKSTALKILAGKQK-PNL-GRY-DNPPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQYVDQI 173 (592)
T ss_pred CCcchhccccccCcccHHHHHHHHhCCCC-CCC-CCC-CCCcchHHHhhhhhhHHHhhhhhhhccccccCcCChHHHHHH
Confidence 35899999999999999999999999764 332 211 01111000 0 000 00111111
Q ss_pred CcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHHHHHhhCCCEE
Q 004537 238 DVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLL 317 (746)
Q Consensus 238 ~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~il 317 (746)
+... ..+|.++|. ....++..+++++.+.|.+..+..+ ..|||||-||.+||++-+.+.++.
T Consensus 174 pr~~-k~~v~~~l~------------~~~~r~~~~~~~~~~~L~~~~~re~-----~~lsggelqrfaia~~~vq~advy 235 (592)
T KOG0063|consen 174 PRAV-KGTVGSLLD------------RKDERDNKEEVCDQLDLNNLLDREV-----EQLSGGELQRFAIAMVCVQKADVY 235 (592)
T ss_pred HHHH-HHHHHHHHH------------HHhhcccHHHHHHHHHHhhHHHhhh-----hhcccchhhhhhhhhhhhhhccee
Confidence 1111 113333332 1222234667788888877766544 579999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeC
Q 004537 318 FLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 371 (746)
Q Consensus 318 lLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~ 371 (746)
++|||.+.||...+..--..++.+....+=||++-||++- +--+.|-+.+|..
T Consensus 236 MFDEpSsYLDVKQRLkaA~~IRsl~~p~~YiIVVEHDLsV-LDylSDFiCcLYG 288 (592)
T KOG0063|consen 236 MFDEPSSYLDVKQRLKAAITIRSLINPDRYIIVVEHDLSV-LDYLSDFICCLYG 288 (592)
T ss_pred EecCCcccchHHHhhhHHHHHHHhhCCCCeEEEEEeechH-HHhhhcceeEEec
Confidence 9999999999999999999999998888899999999874 4445788888864
|
|
| >TIGR01291 nodJ ABC-2 type transporter, NodJ family | Back alignment and domain information |
|---|
Probab=99.25 E-value=4.7e-09 Score=110.55 Aligned_cols=236 Identities=11% Similarity=0.023 Sum_probs=146.1
Q ss_pred HHHHHHHHHH-hhc-chhHHHHHHHHHHHHHHHHHHhcCCCCC-ChhhHHHHH--HHHHHHHHHHHHHHHHHHHHHhHHh
Q 004537 494 TILFRRGIKE-HRH-DYFSWLRITQVLATAVILGLLWWQSDSK-SPKGLEDQA--GLLFFIAVFWSFFPIFTAIFTFPQE 568 (746)
Q Consensus 494 ~~L~~R~~~~-~R~-~~~~~~r~~~~i~~ali~G~lf~~~~~~-~~~~~~~~~--g~lff~~~~~~~~~~~~~i~~~~~e 568 (746)
..+.+|+++. .|+ +......+++-++.-+++|..+-....+ +..+..+.. |++-+.+++.++......+..-..|
T Consensus 8 ~~~~~R~~~~~~r~~~~~~~~~~~~P~~~l~~fg~~~~~~~~~~~g~~y~~f~~pg~l~~~~~~~~~~~~~~~~~~~~r~ 87 (253)
T TIGR01291 8 AAVWRRNALAWKKVAAASVLGNLADPLIYLFGLGVGLGKMVGSVDGVSYAAFLAAGMVATSAMTASTFETIYATFARMRV 87 (253)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455888875 455 4444445666666667777776432110 101111111 2222222222211100000011123
Q ss_pred hHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 004537 569 RAMLSKERAADMYRLSAYFLARTTSDLPLNLVLPVLFLVIVYFMAGLRMGAGPFFLSMLTVFLSIVAAQGLGLAIGAILM 648 (746)
Q Consensus 569 R~v~~rEr~~g~Y~~~ay~la~~l~~lP~~~~~~~if~~ivY~m~gl~~~~~~Ff~f~l~~~l~~~~~~slg~~i~a~~~ 648 (746)
+..++|-+..-. ++..++++|++.+.-..++..++...+.+++ |..+. ...+..+..+++..++..++|++++++.+
T Consensus 88 ~g~~~~l~~~Pv-~~~~~~~g~~~~~~~~~~~~~~ii~~~~~~~-g~~~~-~~~l~~~~~~ll~~l~~~~lg~~~a~~~~ 164 (253)
T TIGR01291 88 TRTWEAMLYTPI-TVGDIVLGEVAWAATKASLAGTIIGVVTATL-GYIEW-WSLIYILPVIALTGLAFASLSMLVAALAP 164 (253)
T ss_pred cccHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchh-hhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333444333333 6789999999999777777776655555443 44433 33444444555667777899999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHhhcccC--CCccchhhhhccCHHHHHHHHHHHHHcCCCCCCCCCcccCchhhhHHHHHHHH
Q 004537 649 DLKKATTLASVTIMTFMLAGGYFVQ--EVPVFISWIRYMSFNFHTYKILLKIQYADISPIVNGMRTDSGFREVCALVAMV 726 (746)
Q Consensus 649 ~~~~A~~~~~~~~~~~~lf~Gf~i~--~ip~~~~Wl~yiS~~~yafeal~~nef~~~~~~~~g~~~~~~~~~~~iL~~~~ 726 (746)
+.+.+..+.+++..|+++.+|.+.| .+|.|++|+.+++|..|+.|++-..-+++ +..+.+.++++++++.
T Consensus 165 ~~~~~~~i~~~i~~pl~flSg~~~P~~~mP~~lq~i~~~nPlt~~v~~~R~~~~g~--------~~~~~~~~~~~l~~~~ 236 (253)
T TIGR01291 165 SYAYFAFYQSLVITPMLFLSGVVFPVFQLNDVIQGMTHFLPLAHSIDDIRPVMLGG--------PGTQVGLHLGALCLYA 236 (253)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhcCHHhChHHHHHHHHHCcHHHHHHHHHHHHhCC--------CcHHHHHHHHHHHHHH
Confidence 9999988889999999999999988 79999999999999999999975554432 1112335678888888
Q ss_pred HHHHHHHHHHHHHh
Q 004537 727 FGYRLLAYLSLRKM 740 (746)
Q Consensus 727 ~~f~~l~~~~L~~~ 740 (746)
+++..++....|+.
T Consensus 237 vv~~~la~~~fr~~ 250 (253)
T TIGR01291 237 VVPFFISAALLRRR 250 (253)
T ss_pred HHHHHHHHHHHHhh
Confidence 88888777766543
|
Nearly all members of this subfamily are NodJ which, together with NodI (TIGR01288), acts to export a variety of modified carbohydrate molecules as signals to plant hosts to establish root nodules. The seed alignment includes a highly divergent member from Azorhizobium caulinodans that is, nonetheless, associated with nodulation. This model is designated as subfamily in part because not all sequences derived from the last common ancestral sequence of Rhizobium sp. and Azorhizobium caulinodans NodJ are necessarily nodulation proteins. |
| >TIGR00634 recN DNA repair protein RecN | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.4e-11 Score=143.85 Aligned_cols=77 Identities=26% Similarity=0.400 Sum_probs=70.0
Q ss_pred cCCCHHHHHHHHHHHHHhhC----CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEE
Q 004537 294 RGVSGGERKRVCIGNEIIIN----PSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL 369 (746)
Q Consensus 294 ~~LSGGerqRv~IA~aL~~~----p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL 369 (746)
+.+||||+||++||++++.. |+++||||||+|||+.++..+.+.|+++++ ++|||++||+|. +...||++++|
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~-~~~vi~iTH~~~--~~~~ad~~~~l 515 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSE-RHQVLCVTHLPQ--VAAHADAHFKV 515 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEEChHH--HHHhcCeEEEE
Confidence 46899999999999999985 699999999999999999999999999975 899999999975 44689999999
Q ss_pred eCCe
Q 004537 370 GKGS 373 (746)
Q Consensus 370 ~~G~ 373 (746)
++|.
T Consensus 516 ~k~~ 519 (563)
T TIGR00634 516 EKEG 519 (563)
T ss_pred EEcc
Confidence 8864
|
All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair. |
| >TIGR03861 phenyl_ABC_PedC alcohol ABC transporter, permease protein | Back alignment and domain information |
|---|
Probab=99.22 E-value=7.2e-09 Score=108.92 Aligned_cols=235 Identities=11% Similarity=0.152 Sum_probs=151.3
Q ss_pred HHHHHHHHHHHHHH-hhcchhHHHHHHHHHHHHHHHHHHhcCC-CC------CChhhH--HHHHHHHHHHHHHHHHHHHH
Q 004537 490 IQQYTILFRRGIKE-HRHDYFSWLRITQVLATAVILGLLWWQS-DS------KSPKGL--EDQAGLLFFIAVFWSFFPIF 559 (746)
Q Consensus 490 ~~Q~~~L~~R~~~~-~R~~~~~~~r~~~~i~~ali~G~lf~~~-~~------~~~~~~--~~~~g~lff~~~~~~~~~~~ 559 (746)
++++..+++|.++. .|++.....-+++-++.-+++|.+|-.. +. ++..+. .--.|++-+...+.++..
T Consensus 1 ~~~~~~l~~rel~~~~r~~~~~~~~ll~Pl~~l~~f~~~f~~~~~~~~~~~~~~~~~y~~fl~pGi~~~~~~~~~~~~-- 78 (253)
T TIGR03861 1 LICFNGIVLREALRFVQQRSRFLSALVRPLLWLLVFAAGFRAALGISIIEPYDTYITYEVYIVPGLCCMILLFNGMQS-- 78 (253)
T ss_pred ChHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHhhccccccccCCCCCCHHHHHHHHHHHHHHHHHHHHh--
Confidence 35788899999986 5666655556777777778888887432 10 000011 112233333222222211
Q ss_pred HHHH-HhHHhhHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCChHHHHHHHHHHHHHHHHHHH
Q 004537 560 TAIF-TFPQERAMLSKERAADMYRLSAYFLARTTSDLPLNLVLPVLFLVIVYFMAGLRMGAGPFFLSMLTVFLSIVAAQG 638 (746)
Q Consensus 560 ~~i~-~~~~eR~v~~rEr~~g~Y~~~ay~la~~l~~lP~~~~~~~if~~ivY~m~gl~~~~~~Ff~f~l~~~l~~~~~~s 638 (746)
+.. ...+|+..+.+=+.... +...+.+++++...-..++..+++.++.+. .|.+.....++.....+++..++..+
T Consensus 79 -~~~~~~~r~~g~~~~l~~~p~-~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~-~g~~~~~~~~l~~~~~~~l~~~~~~~ 155 (253)
T TIGR03861 79 -SLSMVYDREMGSMRVLLTSPL-PRPFLLFCKLLASALISLLQVYAFLAIAAL-VGVQPPVWGYVSVLPALVLVAFMLGA 155 (253)
T ss_pred -hhHhHHhHhcCHHHHHhhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCCchhHHHHHHHHHHHHHHHHH
Confidence 111 11233334444454444 677899999999987777776665555543 36665544444444455566677889
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcccC--C---CccchhhhhccCHHHHHHHHHHHHHcCCCCCCCCCcccC
Q 004537 639 LGLAIGAILMDLKKATTLASVTIMTFMLAGGYFVQ--E---VPVFISWIRYMSFNFHTYKILLKIQYADISPIVNGMRTD 713 (746)
Q Consensus 639 lg~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~--~---ip~~~~Wl~yiS~~~yafeal~~nef~~~~~~~~g~~~~ 713 (746)
+|+++++++++.+.+..+.++++.+++..+|.+.| . +|.|++|+.+++|++|..|++=..-+++
T Consensus 156 lgl~la~l~~~~~~~~~i~~~~~~~l~flSgi~~p~~~~~~~p~~l~~i~~~nPl~~~i~~~R~~~~g~----------- 224 (253)
T TIGR03861 156 LGLALSNLIRQLENFAGVMNFVIFPMFFLSSALYPLWKMQEASTWLYWICALNPFTHAVELVRFALYGQ----------- 224 (253)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHhhHhhhhhhcccccHHHHHHHHhCcHHHHHHHHHHHHhCC-----------
Confidence 99999999999988888888888888889998865 3 4889999999999999999875432211
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHh
Q 004537 714 SGFREVCALVAMVFGYRLLAYLSLRKM 740 (746)
Q Consensus 714 ~~~~~~~iL~~~~~~f~~l~~~~L~~~ 740 (746)
..+....+++++.+++.+++....|+.
T Consensus 225 ~~~~~~~~~~~~~~v~~~~~~~~fr~~ 251 (253)
T TIGR03861 225 LNLPALGWTLGATTLFTLLAFWGFDPQ 251 (253)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHhhcc
Confidence 124456677788887777777766553
|
Members of this protein family, part of a larger class of efflux-type ABC transport permease proteins, are found exclusively in genomic contexts with pyrroloquinoline-quinone (PQQ) biosynthesis enzymes and/or PQQ-dependent alcohol dehydrogenases, such as the phenylethanol dehydrogenase PedE of Pseudomonas putida U. Members include PedC, an apparent phenylethanol transport protein whose suggested role is efflux to limit intracellular concentrations of toxic metabolites during phenylethanol catalysis. |
| >PRK07721 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.6e-10 Score=128.24 Aligned_cols=174 Identities=20% Similarity=0.263 Sum_probs=115.3
Q ss_pred cccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeC---Ch---------hccCcEEEEec
Q 004537 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY---SK---------SLKSKIGFVTQ 236 (746)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~---~~---------~~~~~i~yv~Q 236 (746)
+..+++++ +.+.+|++++|+|+||+|||||+++|+|.. . +..|.|.+.|+.- .+ .+++.|.+|.+
T Consensus 145 g~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~-~-~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~ 221 (438)
T PRK07721 145 GVRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNT-S-ADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVAT 221 (438)
T ss_pred chhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhccc-C-CCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEEC
Confidence 35689999 999999999999999999999999999853 3 4579999965443 21 24567889987
Q ss_pred CCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHH-HHHhhCCC
Q 004537 237 DDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG-NEIIINPS 315 (746)
Q Consensus 237 ~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA-~aL~~~p~ 315 (746)
.+.-. -.+....+.+ -.+.|.+.+-| .|..+- ...++ |.+-| |++.
T Consensus 222 ~~~~~---~~r~~~~~~a--------------~~iAEyfr~~g----~~Vll~---~Dslt-----r~A~A~rEis---- 268 (438)
T PRK07721 222 SDQPA---LMRIKGAYTA--------------TAIAEYFRDQG----LNVMLM---MDSVT-----RVAMAQREIG---- 268 (438)
T ss_pred CCCCH---HHHHHHHHHH--------------HHHHHHHHHCC----CcEEEE---EeChH-----HHHHHHHHHH----
Confidence 54311 1111111111 11223333323 222221 11222 11111 2211
Q ss_pred EEEEeCC--CCCCCHHHHHHHHHHHHHHHH--CCC-----EEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHH
Q 004537 316 LLFLDEP--TSGLDSTTALRIVQMLQDIAE--AGK-----TVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (746)
Q Consensus 316 illLDEP--TsgLD~~~~~~i~~~L~~l~~--~g~-----Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~ 382 (746)
+.+.|| |+|+|+.....+.+.++++.+ +|. ||++.+||++. ..||++..+.+|+++..++..+
T Consensus 269 -l~~ge~P~~~G~dp~~~~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~e---~i~d~v~~i~dG~Ivls~~la~ 340 (438)
T PRK07721 269 -LAVGEPPTTKGYTPSVFAILPKLLERTGTNASGSITAFYTVLVDGDDMNE---PIADTVRGILDGHFVLDRQLAN 340 (438)
T ss_pred -HhcCCCCccccCCHHHHHHHHHHHHHhcCCCCCCeeeEEEEEEECCCCCc---hhhhhEEEecCEEEEEeccHHH
Confidence 122453 689999999999999999873 575 99999999874 6799999999999999998766
|
|
| >PRK10869 recombination and repair protein; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=3e-11 Score=140.22 Aligned_cols=75 Identities=24% Similarity=0.389 Sum_probs=68.9
Q ss_pred CCCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEe
Q 004537 295 GVSGGERKRVCIGNEIII----NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG 370 (746)
Q Consensus 295 ~LSGGerqRv~IA~aL~~----~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~ 370 (746)
.+||||+||++||++++. +|+++++|||++|||..++..+.+.|+++++ +.+|||+||+|. +...||+.+++.
T Consensus 430 ~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~-~~qvi~iTH~~~--~~~~ad~~~~v~ 506 (553)
T PRK10869 430 VASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGE-STQVMCVTHLPQ--VAGCGHQHFFVS 506 (553)
T ss_pred hCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH--HHHhCCEEEEEe
Confidence 589999999999999997 5899999999999999999999999999975 789999999985 458999999998
Q ss_pred CC
Q 004537 371 KG 372 (746)
Q Consensus 371 ~G 372 (746)
++
T Consensus 507 k~ 508 (553)
T PRK10869 507 KE 508 (553)
T ss_pred cc
Confidence 75
|
|
| >PHA02562 46 endonuclease subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.4e-11 Score=141.93 Aligned_cols=79 Identities=24% Similarity=0.381 Sum_probs=69.7
Q ss_pred cccCCCHHHHHHHHHHHHHh----------hCCCEEEEeCCC-CCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHH
Q 004537 292 FVRGVSGGERKRVCIGNEII----------INPSLLFLDEPT-SGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLF 360 (746)
Q Consensus 292 ~~~~LSGGerqRv~IA~aL~----------~~p~illLDEPT-sgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~ 360 (746)
.+..||||||||++||++|+ .+|+++|||||| ++||+.....+.+.|+++ .|.|||++||++. ..
T Consensus 465 ~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~--~~~~iiiish~~~--~~ 540 (562)
T PHA02562 465 SYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL--KDTNVFVISHKDH--DP 540 (562)
T ss_pred ChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC--CCCeEEEEECchh--ch
Confidence 34679999999999999887 599999999998 789999999999999998 4899999999964 45
Q ss_pred hccCEEEEEeC-CeE
Q 004537 361 HKFDKLILLGK-GSL 374 (746)
Q Consensus 361 ~~~D~i~vL~~-G~i 374 (746)
..||++++|.+ |+.
T Consensus 541 ~~~d~~~~l~~~~~~ 555 (562)
T PHA02562 541 QKFDRHLKMEKVGRF 555 (562)
T ss_pred hhhhcEEEEEEECCe
Confidence 77999999986 554
|
|
| >COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.8e-10 Score=133.10 Aligned_cols=137 Identities=23% Similarity=0.392 Sum_probs=103.7
Q ss_pred CCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHH------HHHcCCCccccccccCccccCCCHHHHHHHHHHHHHhhCC-
Q 004537 242 PHLTVKETLTYAALLRLPNTLTKQQKEKRAIDV------INELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINP- 314 (746)
Q Consensus 242 ~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~------l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p- 314 (746)
..|++.|.+.|...+.+.+. .....+..+.++ |..+||+... .++...+|||||.||+-||..+=++=
T Consensus 427 ~~msi~~~~~f~~~l~l~~~-~~~ia~~ilkei~~RL~fL~~VGL~YLt----L~R~a~TLSGGEaQRIRLAtqiGS~Lt 501 (935)
T COG0178 427 SEMSIADALEFFENLKLSEK-EKKIAEPILKEIKERLGFLVDVGLGYLT----LSRSAGTLSGGEAQRIRLATQIGSGLT 501 (935)
T ss_pred hhccHHHHHHHHHhCCCchh-hHHHHHHHHHHHHHHHHHHHHcCcCccc----ccccCCCcChhHHHHHHHHHHhcccce
Confidence 35788888888766553211 111122222333 3345665322 12344689999999999999997653
Q ss_pred -CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEE------eCCeEEEecCHHHHHH
Q 004537 315 -SLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL------GKGSLLYFGKASEAMA 385 (746)
Q Consensus 315 -~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL------~~G~iv~~G~~~~~~~ 385 (746)
=+++||||+.||-+..-.++++.|++|.+.|-|+|++-||+ +....+|+|+=| +.|+|++.|+++++++
T Consensus 502 GVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDe--dti~~AD~iIDiGPgAG~~GGeIv~~Gtp~~i~~ 577 (935)
T COG0178 502 GVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDE--DTIRAADHIIDIGPGAGEHGGEIVAEGTPEELLA 577 (935)
T ss_pred eeEEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCH--HHHhhcCEEEeeCCCCCcCCCEEEEccCHHHHHh
Confidence 36799999999999999999999999999999999999995 467889999998 5689999999999985
|
|
| >TIGR00618 sbcc exonuclease SbcC | Back alignment and domain information |
|---|
Probab=99.19 E-value=4.8e-11 Score=148.77 Aligned_cols=81 Identities=21% Similarity=0.239 Sum_probs=73.7
Q ss_pred ccccCCCHHHHHHHHHHHHHhh----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHH
Q 004537 291 SFVRGVSGGERKRVCIGNEIII----------NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLF 360 (746)
Q Consensus 291 ~~~~~LSGGerqRv~IA~aL~~----------~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~ 360 (746)
..++.|||||++||+||++|+. +|++|||||||+|||+.+...+++.|+++.+.|++|++|||++. ...
T Consensus 946 r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~~~-~~~ 1024 (1042)
T TIGR00618 946 RPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVPE-FRE 1024 (1042)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHH-HHH
Confidence 3567899999999999999986 79999999999999999999999999999878999999999975 467
Q ss_pred hccCEEEEEeCC
Q 004537 361 HKFDKLILLGKG 372 (746)
Q Consensus 361 ~~~D~i~vL~~G 372 (746)
..+|+|.|++.|
T Consensus 1025 ~~~~~i~v~~~~ 1036 (1042)
T TIGR00618 1025 RIPHRILVKKTN 1036 (1042)
T ss_pred hhCCEEEEEECC
Confidence 889999999754
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >TIGR00025 Mtu_efflux ABC transporter efflux protein, DrrB family | Back alignment and domain information |
|---|
Probab=99.19 E-value=5.6e-09 Score=108.31 Aligned_cols=162 Identities=17% Similarity=0.256 Sum_probs=113.9
Q ss_pred hhHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 004537 568 ERAMLSKERAADMYRLSAYFLARTTSDLPLNLVLPVLFLVIVYFMAGLRMGAGPFFLSMLTVFLSIVAAQGLGLAIGAIL 647 (746)
Q Consensus 568 eR~v~~rEr~~g~Y~~~ay~la~~l~~lP~~~~~~~if~~ivY~m~gl~~~~~~Ff~f~l~~~l~~~~~~slg~~i~a~~ 647 (746)
|+..+.|=+..-. ++..|+++|++..++..++..+++. +++++.|++.....+ ..++.+.+..+++.+++.+++++.
T Consensus 64 ~~G~l~rl~~~P~-~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~ 140 (232)
T TIGR00025 64 RYGALKRLGATPL-PRLGILAGRSLAVVARVFLQTLILL-VIGFVLGFRFAGGAL-TALTLGAVIIALGTALFAALGLVA 140 (232)
T ss_pred HhCHHHHHhcCCC-cHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhccCcCCchH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445666655544 7889999999988888776655554 556677988654332 223333444455666777777766
Q ss_pred C---CHHHHHHHHHHHHHHHHHHhhcccC--CCccchhhhhccCHHHHHHHHHHHHHcCCCCCCCCCcccCchhhhHHHH
Q 004537 648 M---DLKKATTLASVTIMTFMLAGGYFVQ--EVPVFISWIRYMSFNFHTYKILLKIQYADISPIVNGMRTDSGFREVCAL 722 (746)
Q Consensus 648 ~---~~~~A~~~~~~~~~~~~lf~Gf~i~--~ip~~~~Wl~yiS~~~yafeal~~nef~~~~~~~~g~~~~~~~~~~~iL 722 (746)
+ +.+.+..++++..++++++||.+.| .+|.|++|+.+++|++|+.+++-..-.+ |.+....+.+++++
T Consensus 141 ~~~~~~~~~~~i~~~~~~p~~~lSG~~~P~~~mP~~lq~i~~~~P~t~~~~~~r~~~~~-------~~~~~~~~~~~~~l 213 (232)
T TIGR00025 141 GGTLQAEIVLAVANLVWFIFALLSAGLVPLNLIPTWIKWFVRVQPSSYATEALRQAATV-------SVDTFGAVRDLVVV 213 (232)
T ss_pred hccccHHHHHHHHHHHHHHHHHHhheeeecccccHHHHHHHHhCcHHHHHHHHHHHHcC-------CCChhhHHHHHHHH
Confidence 4 4555577888888899999999998 7999999999999999999987554332 22223345677788
Q ss_pred HHHHHHHHHHHHHHHHH
Q 004537 723 VAMVFGYRLLAYLSLRK 739 (746)
Q Consensus 723 ~~~~~~f~~l~~~~L~~ 739 (746)
+++.+++..++....||
T Consensus 214 ~~~~~v~~~la~~~~~r 230 (232)
T TIGR00025 214 LAFWVALAALAAIRLRR 230 (232)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 88888887777666553
|
This model represents a branch of a larger superfamily that also includes NodJ, a part of the NodIJ pair of nodulation-triggering signal efflux proteins. The members of this branch may all act in antibiotic resistance. |
| >PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.6e-11 Score=145.54 Aligned_cols=81 Identities=19% Similarity=0.210 Sum_probs=63.5
Q ss_pred cCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCC
Q 004537 294 RGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQ-MLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKG 372 (746)
Q Consensus 294 ~~LSGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~-~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G 372 (746)
..+|+|++|++.|++++ .+|+++|+|||++|+|+.....+.. .++.+.+.|.++|++||++.. ....+|+..++ ++
T Consensus 389 StfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~el-~~~~~~~~~v~-~~ 465 (782)
T PRK00409 389 STFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKEL-KALMYNREGVE-NA 465 (782)
T ss_pred hHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHHH-HHHHhcCCCeE-EE
Confidence 57999999999999988 8999999999999999999888854 577777778999999999542 22334544443 45
Q ss_pred eEEEe
Q 004537 373 SLLYF 377 (746)
Q Consensus 373 ~iv~~ 377 (746)
.+.+.
T Consensus 466 ~~~~d 470 (782)
T PRK00409 466 SVEFD 470 (782)
T ss_pred EEEEe
Confidence 55553
|
|
| >cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.13 E-value=1e-10 Score=120.16 Aligned_cols=135 Identities=19% Similarity=0.228 Sum_probs=90.0
Q ss_pred cccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEecCCcCCCCCCHHH
Q 004537 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKE 248 (746)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTV~E 248 (746)
++.+-+|+++..++|++++|.||||+||||+++.+++...- ... |..+..+ ..+++++ +.+|..+...|
T Consensus 16 ~~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~l-a~~------G~~vpa~-~~~i~~~---~~i~~~~~~~d 84 (218)
T cd03286 16 SSFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIM-AQM------GMDVPAK-SMRLSLV---DRIFTRIGARD 84 (218)
T ss_pred CCeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHH-HHc------CCccCcc-ccEeccc---cEEEEecCccc
Confidence 45789999999999999999999999999999999873210 011 1111111 1112221 22232222222
Q ss_pred HHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCH--HHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 004537 249 TLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSG--GERKRVCIGNEIIINPSLLFLDEPTSGL 326 (746)
Q Consensus 249 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSG--GerqRv~IA~aL~~~p~illLDEPTsgL 326 (746)
++.. ++|- -|-+|++-....+.+|+++++|||.+|+
T Consensus 85 ~~~~------------------------------------------~~StF~~e~~~~~~il~~~~~~sLvLlDE~~~Gt 122 (218)
T cd03286 85 DIMK------------------------------------------GESTFMVELSETANILRHATPDSLVILDELGRGT 122 (218)
T ss_pred cccc------------------------------------------CcchHHHHHHHHHHHHHhCCCCeEEEEecccCCC
Confidence 2211 1111 2455555555556789999999999999
Q ss_pred CHHHHHHHHHH-HHHHHHC-CCEEEEEecCCC
Q 004537 327 DSTTALRIVQM-LQDIAEA-GKTVVTTIHQPS 356 (746)
Q Consensus 327 D~~~~~~i~~~-L~~l~~~-g~Tvi~~~H~~~ 356 (746)
|+.....+... ++.+.+. +.++|++||++.
T Consensus 123 ~~~dg~~la~ail~~L~~~~~~~~i~~TH~~e 154 (218)
T cd03286 123 STHDGYAIAHAVLEYLVKKVKCLTLFSTHYHS 154 (218)
T ss_pred CchHHHHHHHHHHHHHHHhcCCcEEEEeccHH
Confidence 99999888888 7777765 899999999964
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >PRK08533 flagellar accessory protein FlaH; Reviewed | Back alignment and domain information |
|---|
Probab=99.12 E-value=5.7e-10 Score=115.82 Aligned_cols=150 Identities=19% Similarity=0.263 Sum_probs=91.6
Q ss_pred EEeCCeEEEEECCCCccHHHH-HHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEecCCcCCCCCCHHHHHHHHHhcc
Q 004537 179 SVNPGEVLALMGPSGSGKTTL-LNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLR 257 (746)
Q Consensus 179 ~i~~Ge~~aIvGpsGsGKSTL-L~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~ 257 (746)
-+++|+++.|.|+|||||||| ++.+.+... .| .++.|+..+ .|..+.+.....+.
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~----~g--------------~~~~yi~~e------~~~~~~~~~~~~~g 75 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQ----NG--------------YSVSYVSTQ------LTTTEFIKQMMSLG 75 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHh----CC--------------CcEEEEeCC------CCHHHHHHHHHHhC
Confidence 489999999999999999999 688886321 12 124555532 35555555443222
Q ss_pred CCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCC----CHH
Q 004537 258 LPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEII----INPSLLFLDEPTSGL----DST 329 (746)
Q Consensus 258 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~----~~p~illLDEPTsgL----D~~ 329 (746)
. .. ++.... +.-...+ .. ..+|+++.++-.+.+.+- .+|+++++||||+++ |+.
T Consensus 76 ~--~~---------~~~~~~-~~l~~~~-----~~-~~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~ 137 (230)
T PRK08533 76 Y--DI---------NKKLIS-GKLLYIP-----VY-PLLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEV 137 (230)
T ss_pred C--ch---------HHHhhc-CcEEEEE-----ec-ccccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchH
Confidence 1 11 111110 0000001 01 136777665555444333 369999999999999 888
Q ss_pred HHHHHHHHHHHHHHCCCEEEEEecCCCh------HHHhccCEEEEEe
Q 004537 330 TALRIVQMLQDIAEAGKTVVTTIHQPSS------RLFHKFDKLILLG 370 (746)
Q Consensus 330 ~~~~i~~~L~~l~~~g~Tvi~~~H~~~~------~i~~~~D~i~vL~ 370 (746)
...++++.++++++.|.|+++++|+... .+...+|-|+.|+
T Consensus 138 ~~~~l~~~l~~l~~~g~tvi~t~~~~~~~~~~~~~~~~~~DgvI~L~ 184 (230)
T PRK08533 138 AVNDLMAFFKRISSLNKVIILTANPKELDESVLTILRTAATMLIRLE 184 (230)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEecccccccccceeEEEeeeEEEEEE
Confidence 8889999999998778887776664321 0233457777776
|
|
| >PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A | Back alignment and domain information |
|---|
Probab=99.11 E-value=8.5e-11 Score=120.14 Aligned_cols=63 Identities=22% Similarity=0.487 Sum_probs=53.5
Q ss_pred cCCCHHHHHHHHHHHHHhhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCC
Q 004537 294 RGVSGGERKRVCIGNEIIINP---SLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPS 356 (746)
Q Consensus 294 ~~LSGGerqRv~IA~aL~~~p---~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~ 356 (746)
..+|.|+||.+.|...|...+ .++++|||-++|+|..+..+++.|++..+.+.-+|++||.|.
T Consensus 235 ~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp~ 300 (303)
T PF13304_consen 235 SSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSPF 300 (303)
T ss_dssp S---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-GG
T ss_pred ccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccch
Confidence 457999999999999988776 899999999999999999999999887765789999999864
|
|
| >cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs | Back alignment and domain information |
|---|
Probab=99.11 E-value=8.1e-10 Score=110.06 Aligned_cols=145 Identities=21% Similarity=0.125 Sum_probs=94.9
Q ss_pred EEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHH
Q 004537 186 LALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQ 265 (746)
Q Consensus 186 ~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~ 265 (746)
+.|.||+|+|||||.--++-... .. | +.+.|+.= ..|..+.+.....+. ...
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~---~~------g--------~~v~~~s~------e~~~~~~~~~~~~~g----~~~- 53 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGL---AR------G--------EPGLYVTL------EESPEELIENAESLG----WDL- 53 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH---HC------C--------CcEEEEEC------CCCHHHHHHHHHHcC----CCh-
Confidence 67999999999999876652111 11 1 12445432 134555444433221 111
Q ss_pred HHHHHHHHHHHHcCCCccccccccCccccCCCHHHHH------HHHHHHHHhhCCCEEEEeCCCCCCC---HHHHHHHHH
Q 004537 266 QKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK------RVCIGNEIIINPSLLFLDEPTSGLD---STTALRIVQ 336 (746)
Q Consensus 266 ~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerq------Rv~IA~aL~~~p~illLDEPTsgLD---~~~~~~i~~ 336 (746)
++ +...|+....+ ..+..+|+||+| +.........+|+++++|||++.+| ......+.+
T Consensus 54 ------~~-l~~~g~l~~~d-----~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~ 121 (187)
T cd01124 54 ------ER-LEDEGLLAIVD-----ADPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRR 121 (187)
T ss_pred ------HH-HHhcCCeEEEe-----cCccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHH
Confidence 11 12233322223 234578999998 4444555667999999999999999 888888889
Q ss_pred HHHHHHHCCCEEEEEecCCCh--------HHHhccCEEEEEe
Q 004537 337 MLQDIAEAGKTVVTTIHQPSS--------RLFHKFDKLILLG 370 (746)
Q Consensus 337 ~L~~l~~~g~Tvi~~~H~~~~--------~i~~~~D~i~vL~ 370 (746)
.++.+++.|.|+|+++|.... .+...||.|+.|+
T Consensus 122 l~~~l~~~g~tvi~v~~~~~~~~~~~~~~~~~~~aD~ii~l~ 163 (187)
T cd01124 122 LLFALKRFGVTTLLTSEQSGLEGTGFGGGDVEYLVDGVIRLR 163 (187)
T ss_pred HHHHHHHCCCEEEEEeccccCCCcccCcCceeEeeeEEEEEE
Confidence 999988889999999998653 2567789999887
|
A related protein is found in archaea. |
| >PRK13695 putative NTPase; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=8.3e-11 Score=116.62 Aligned_cols=80 Identities=13% Similarity=0.185 Sum_probs=64.8
Q ss_pred cCCCHHHHHHHHHHHHHhhCCCEEEEeCC--CCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeC
Q 004537 294 RGVSGGERKRVCIGNEIIINPSLLFLDEP--TSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 371 (746)
Q Consensus 294 ~~LSGGerqRv~IA~aL~~~p~illLDEP--TsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~ 371 (746)
..+||+++-+..+.+..+.+|+++++||| +.++| ..+.+.+.++.+.|+++|+++|+. .+...+|+|..+.+
T Consensus 77 ~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~----~~~~~~l~~~~~~~~~~i~v~h~~--~~~~~~~~i~~~~~ 150 (174)
T PRK13695 77 VNLEDLERIGIPALERALEEADVIIIDEIGKMELKS----PKFVKAVEEVLDSEKPVIATLHRR--SVHPFVQEIKSRPG 150 (174)
T ss_pred EehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhh----HHHHHHHHHHHhCCCeEEEEECch--hhHHHHHHHhccCC
Confidence 46999999999999999999999999995 43444 345666666666799999999984 34567899999999
Q ss_pred CeEEEecC
Q 004537 372 GSLLYFGK 379 (746)
Q Consensus 372 G~iv~~G~ 379 (746)
|++++.-+
T Consensus 151 ~~i~~~~~ 158 (174)
T PRK13695 151 GRVYELTP 158 (174)
T ss_pred cEEEEEcc
Confidence 99987743
|
|
| >COG3910 Predicted ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.03 E-value=3.7e-09 Score=103.60 Aligned_cols=82 Identities=23% Similarity=0.442 Sum_probs=60.7
Q ss_pred cCccccCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhc-cCEEE
Q 004537 289 GGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHK-FDKLI 367 (746)
Q Consensus 289 g~~~~~~LSGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~-~D~i~ 367 (746)
|+...+.-|-||-=---+.+. ..+.-|.+||||-++|.|.-+.+++..|+++++.|.-+|+.||.|- +..+ --.|+
T Consensus 123 ~~~sLh~~SHGEsf~~i~~~r-f~~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPi--LlAiP~A~I~ 199 (233)
T COG3910 123 GGRSLHHMSHGESFLAIFHNR-FNGQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPI--LLAIPGAEIY 199 (233)
T ss_pred CCcchhhhccchHHHHHHHHH-hccCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChh--heeCCCcEEE
Confidence 334445689999754334433 4577899999999999999999999999999999999999999874 2222 13555
Q ss_pred EEeCCe
Q 004537 368 LLGKGS 373 (746)
Q Consensus 368 vL~~G~ 373 (746)
-++.+-
T Consensus 200 ~~~~~g 205 (233)
T COG3910 200 EISESG 205 (233)
T ss_pred EEecCC
Confidence 555543
|
|
| >PRK03918 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=5.1e-10 Score=137.70 Aligned_cols=78 Identities=28% Similarity=0.330 Sum_probs=68.6
Q ss_pred cccCCCHHHHH------HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCE
Q 004537 292 FVRGVSGGERK------RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDK 365 (746)
Q Consensus 292 ~~~~LSGGerq------Rv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~ 365 (746)
.+..|||||++ |++||++++.+|+++++||||++||+..+..+.+.|..+...+.+||++||++. +...||+
T Consensus 785 ~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~~--~~~~~d~ 862 (880)
T PRK03918 785 PLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDEE--LKDAADY 862 (880)
T ss_pred ChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCHH--HHHhCCe
Confidence 45679999999 555566788999999999999999999999999999998776789999999963 6788999
Q ss_pred EEEEeC
Q 004537 366 LILLGK 371 (746)
Q Consensus 366 i~vL~~ 371 (746)
+++|..
T Consensus 863 ~~~l~~ 868 (880)
T PRK03918 863 VIRVSL 868 (880)
T ss_pred EEEEEe
Confidence 999983
|
|
| >TIGR00606 rad50 rad50 | Back alignment and domain information |
|---|
Probab=99.00 E-value=7e-10 Score=141.18 Aligned_cols=108 Identities=17% Similarity=0.207 Sum_probs=77.4
Q ss_pred CCHHHHHHHHHhccCCCCCcHH---HHHHHHHHHHHHcCCCccccccccCccccCCCHHHHH------HHHHHHHHhhCC
Q 004537 244 LTVKETLTYAALLRLPNTLTKQ---QKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK------RVCIGNEIIINP 314 (746)
Q Consensus 244 lTV~E~l~~~~~~~~~~~~~~~---~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerq------Rv~IA~aL~~~p 314 (746)
.|+.|||.+ . +. .+.+ ....+..+++.. +... |+.++. ...||||||| |++||++++.+|
T Consensus 1156 ~~~~~~i~~-~----~~-~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~--~~~lS~Gq~~~~~~~~rlala~~~~~~~ 1224 (1311)
T TIGR00606 1156 GQDIEYIEI-R----SD-ADENVSASDKRRNYNYRVV--MLKG-DTALDM--RGRCSAGQKVLASLIIRLALAETFCLNC 1224 (1311)
T ss_pred ccHHHHhhc-C----CC-CChHHHHHHHcCchHHHhc--cCCC-CeecCC--CCCCchhhhhHhhHhHHHHHHHHHhcCC
Confidence 599999987 1 11 1211 111223333332 2333 555542 2479999999 999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHH-----CCCEEEEEecCCChHHHhcc
Q 004537 315 SLLFLDEPTSGLDSTTALRIVQMLQDIAE-----AGKTVVTTIHQPSSRLFHKF 363 (746)
Q Consensus 315 ~illLDEPTsgLD~~~~~~i~~~L~~l~~-----~g~Tvi~~~H~~~~~i~~~~ 363 (746)
++|+|||||+|||+.+...+.+.|.++.. .|.|||++||++. .+..+|
T Consensus 1225 ~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~-~~~~~~ 1277 (1311)
T TIGR00606 1225 GIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDED-FVELLG 1277 (1311)
T ss_pred CEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHH-HHHHHh
Confidence 99999999999999999999999988742 3789999999965 354443
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK13830 conjugal transfer protein TrbE; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=7.9e-09 Score=125.50 Aligned_cols=78 Identities=26% Similarity=0.256 Sum_probs=64.8
Q ss_pred hhCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHHCCCEEEEEecCCChH--------HHhccCEEEEEeCCeEEEecCHH
Q 004537 311 IINPSLLFLDEPTSGL-DSTTALRIVQMLQDIAEAGKTVVTTIHQPSSR--------LFHKFDKLILLGKGSLLYFGKAS 381 (746)
Q Consensus 311 ~~~p~illLDEPTsgL-D~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~--------i~~~~D~i~vL~~G~iv~~G~~~ 381 (746)
..+|+++++|||+.+| |+..+..+.+.++++.+.|.++|++||++... +.+.||.+++|.+|++...|+.
T Consensus 650 ~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n~~a~~~~~~- 728 (818)
T PRK13830 650 TGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSISDAERSGIIDVLKESCPTKICLPNGAAREPGTR- 728 (818)
T ss_pred CCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhcCchHHHHHhcCCeEEECCCccccccchH-
Confidence 5799999999999999 79999999999999988899999999998642 2368999999999998777643
Q ss_pred HHHHHHHhcCC
Q 004537 382 EAMAYFSSIGC 392 (746)
Q Consensus 382 ~~~~~f~~~G~ 392 (746)
++++.+|+
T Consensus 729 ---~~~~~~gl 736 (818)
T PRK13830 729 ---EFYERIGF 736 (818)
T ss_pred ---HHHHHcCC
Confidence 34455554
|
|
| >PRK15066 inner membrane transport permease; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=4.7e-07 Score=95.51 Aligned_cols=151 Identities=15% Similarity=0.172 Sum_probs=106.8
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004537 581 YRLSAYFLARTTSDLPLNLVLPVLFLVIVYFMAGLRMGAGPFFLSMLTVFLSIVAAQGLGLAIGAILMDLKKATTLASVT 660 (746)
Q Consensus 581 Y~~~ay~la~~l~~lP~~~~~~~if~~ivY~m~gl~~~~~~Ff~f~l~~~l~~~~~~slg~~i~a~~~~~~~A~~~~~~~ 660 (746)
-+...+.+++++...-..++..++..++.+...|.+... ...++..+++..++....|++++++.++.+.+..+.+++
T Consensus 101 ~~~~~~~~~~il~~~~~~~~~~~iil~i~~~~~~~~~~~--~~~~l~~~ll~~~~f~~~gl~~a~~~~~~~~~~~i~~~~ 178 (257)
T PRK15066 101 VPNHVIILGYVGGGVARGLCVGILVTLISLFFVPLQVHH--WGIVLLTVLLTAILFSLGGLINAVFAKSFDDISIIPTFV 178 (257)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhH--HHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 377789999999887666666655555555544665432 222333333333333445888888888888888888888
Q ss_pred HHHHHHHhhcccC--CCccchhhhhccCHHHHHHHHHHHHHcCCCCCCCCCcccCchhhhHHHHHHHHHHHHHHHHHHHH
Q 004537 661 IMTFMLAGGYFVQ--EVPVFISWIRYMSFNFHTYKILLKIQYADISPIVNGMRTDSGFREVCALVAMVFGYRLLAYLSLR 738 (746)
Q Consensus 661 ~~~~~lf~Gf~i~--~ip~~~~Wl~yiS~~~yafeal~~nef~~~~~~~~g~~~~~~~~~~~iL~~~~~~f~~l~~~~L~ 738 (746)
+.+++..+|.+.| .+|+|++|+.+++|+.|..|++=..-+++ .....+.++++++++.+++.+++....|
T Consensus 179 ~~pl~flSgi~~p~~~lP~~l~~i~~~nPlt~~v~~~R~~~~g~--------~~~~~~~~l~~l~~~~~v~~~la~~~~~ 250 (257)
T PRK15066 179 LTPLTYLGGVFYSISLLPPFWQGVSKLNPIVYMVNAFRYGFLGI--------SDVPLWLAFAVLLVFIVVLYLLAWYLLE 250 (257)
T ss_pred HHHHHHHcchhccHHhChHHHHHHHHHCcHHHHHHHHHHHHcCC--------CCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999887 79999999999999999999875433211 1112356778888999888888888776
Q ss_pred Hhh
Q 004537 739 KMK 741 (746)
Q Consensus 739 ~~~ 741 (746)
+.+
T Consensus 251 r~~ 253 (257)
T PRK15066 251 RGR 253 (257)
T ss_pred hhc
Confidence 554
|
|
| >PRK10246 exonuclease subunit SbcC; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.4e-09 Score=135.40 Aligned_cols=80 Identities=25% Similarity=0.220 Sum_probs=68.8
Q ss_pred ccccCCCHHHHHHHHHHHHHhh--------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhc
Q 004537 291 SFVRGVSGGERKRVCIGNEIII--------NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHK 362 (746)
Q Consensus 291 ~~~~~LSGGerqRv~IA~aL~~--------~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~ 362 (746)
..+++|||||++|++||++|+. +|++||+||||++||+.+...+++.|..+.+.|+||++|||... ..-++
T Consensus 945 r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~~-l~~~i 1023 (1047)
T PRK10246 945 RDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEA-MKERI 1023 (1047)
T ss_pred CCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHHH-HHHhc
Confidence 4567899999999999999996 89999999999999999999999999999888999999999743 23344
Q ss_pred cCEEEEEeC
Q 004537 363 FDKLILLGK 371 (746)
Q Consensus 363 ~D~i~vL~~ 371 (746)
-.+|.|-..
T Consensus 1024 ~~qi~V~k~ 1032 (1047)
T PRK10246 1024 PVQIKVKKI 1032 (1047)
T ss_pred cceEEEEEC
Confidence 556666654
|
|
| >TIGR02788 VirB11 P-type DNA transfer ATPase VirB11 | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.9e-09 Score=116.75 Aligned_cols=144 Identities=19% Similarity=0.245 Sum_probs=94.5
Q ss_pred ceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEe-CChhccCcEEEEecCCcCCCCCCHHHHHHHH
Q 004537 175 GITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP-YSKSLKSKIGFVTQDDVLFPHLTVKETLTYA 253 (746)
Q Consensus 175 ~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~-~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~ 253 (746)
=+++.+++|+.++|.||+|||||||+++|++.+ ++..|.+.++..+ +....+..+.++.+..
T Consensus 136 ~l~~~v~~~~~ili~G~tGsGKTTll~al~~~~--~~~~~iv~ied~~El~~~~~~~~~l~~~~~--------------- 198 (308)
T TIGR02788 136 FLRLAIASRKNIIISGGTGSGKTTFLKSLVDEI--PKDERIITIEDTREIFLPHPNYVHLFYSKG--------------- 198 (308)
T ss_pred HHHHHhhCCCEEEEECCCCCCHHHHHHHHHccC--CccccEEEEcCccccCCCCCCEEEEEecCC---------------
Confidence 366789999999999999999999999999854 3445666664311 0000011121111100
Q ss_pred HhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q 004537 254 ALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALR 333 (746)
Q Consensus 254 ~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~ 333 (746)
.+ + ...++- .-.+..+|-.+|+++++|||.+ .+
T Consensus 199 ---------------------------~~------~---~~~~~~----~~~l~~~Lr~~pd~ii~gE~r~-------~e 231 (308)
T TIGR02788 199 ---------------------------GQ------G---LAKVTP----KDLLQSCLRMRPDRIILGELRG-------DE 231 (308)
T ss_pred ---------------------------CC------C---cCccCH----HHHHHHHhcCCCCeEEEeccCC-------HH
Confidence 00 0 001111 1245667888999999999996 34
Q ss_pred HHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHHH
Q 004537 334 IVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (746)
Q Consensus 334 i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (746)
..+.++.+...+.+++.|+|..+ .....||+..|..|++...|.+.+.+
T Consensus 232 ~~~~l~a~~~g~~~~i~T~Ha~~--~~~~~~Rl~~l~~~~~~~~g~~~~~~ 280 (308)
T TIGR02788 232 AFDFIRAVNTGHPGSITTLHAGS--PEEAFEQLALMVKSSQAGLGLDFAYI 280 (308)
T ss_pred HHHHHHHHhcCCCeEEEEEeCCC--HHHHHHHHHHHhhccccccCCCHHHH
Confidence 56677776543346799999976 45668999999999998888877765
|
The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA. |
| >cd01120 RecA-like_NTPases RecA-like NTPases | Back alignment and domain information |
|---|
Probab=98.94 E-value=3.3e-09 Score=102.05 Aligned_cols=63 Identities=21% Similarity=0.209 Sum_probs=47.1
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCC----------CCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChH
Q 004537 296 VSGGERKRVCIGNEIIINPSLLFLDEPTS----------GLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSR 358 (746)
Q Consensus 296 LSGGerqRv~IA~aL~~~p~illLDEPTs----------gLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~ 358 (746)
.+.++.++...+++...+|+++++||+++ +.|......+.+++....+.+.|+|+++|.....
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~~~ 140 (165)
T cd01120 68 PAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVPSGD 140 (165)
T ss_pred CcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecCCcc
Confidence 45566677888888999999999999995 4455555665555555544689999999987543
|
This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion. |
| >PRK06793 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.92 E-value=4e-09 Score=117.88 Aligned_cols=169 Identities=17% Similarity=0.172 Sum_probs=114.6
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCChhccC
Q 004537 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKS 229 (746)
Q Consensus 150 l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~ 229 (746)
++-++++..+. ....+++++ +.+.+|+.++|+|+||+|||||+++|+|.. . +..|.|.+.|+.
T Consensus 131 ~~r~~i~~~l~-------TGiraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~-~-~~~gvI~~iGer------- 193 (432)
T PRK06793 131 FEREEITDVFE-------TGIKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNA-K-ADINVISLVGER------- 193 (432)
T ss_pred hheechhhccC-------CCCEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccC-C-CCeEEEEeCCCC-------
Confidence 45555554441 234688885 999999999999999999999999999853 2 345666555532
Q ss_pred cEEEEecCCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHHHH
Q 004537 230 KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNE 309 (746)
Q Consensus 230 ~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~a 309 (746)
..+|+|.+.... ..-++.+. ..+ ....+-|.|+|+|+..+.+
T Consensus 194 -------------g~ev~e~~~~~l---------------------~~~gl~~t--vvv--~~tsd~s~~~r~ra~~~a~ 235 (432)
T PRK06793 194 -------------GREVKDFIRKEL---------------------GEEGMRKS--VVV--VATSDESHLMQLRAAKLAT 235 (432)
T ss_pred -------------cccHHHHHHHHh---------------------hhccccee--EEE--EECCCCCHHHHHHHHHHHH
Confidence 146766654321 11122110 111 1235689999999999988
Q ss_pred Hh-------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEeCCeEEEecCH
Q 004537 310 II-------INPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380 (746)
Q Consensus 310 L~-------~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~ 380 (746)
.+ .++-++++||||+..|+. .+|-..+.+.-..|.+..+.+|- + ++++|.-..++|.|...++.
T Consensus 236 ~iAEyfr~~G~~VLlilDslTr~a~A~--reisl~~~e~p~~G~~~~~~s~l-~----~L~ERag~~~~GSiT~~~tv 306 (432)
T PRK06793 236 SIAEYFRDQGNNVLLMMDSVTRFADAR--RSVDIAVKELPIGGKTLLMESYM-K----KLLERSGKTQKGSITGIYTV 306 (432)
T ss_pred HHHHHHHHcCCcEEEEecchHHHHHHH--HHHHHHhcCCCCCCeeeeeeccc-h----hHHHHhccCCCcceEEEEEE
Confidence 87 789999999999999996 55555556654458888888884 2 33444444678988777654
|
|
| >PRK01156 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=3.7e-09 Score=130.35 Aligned_cols=77 Identities=23% Similarity=0.318 Sum_probs=66.6
Q ss_pred cccCCCHHHHHHHHH------HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-C-C-CEEEEEecCCChHHHhc
Q 004537 292 FVRGVSGGERKRVCI------GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-A-G-KTVVTTIHQPSSRLFHK 362 (746)
Q Consensus 292 ~~~~LSGGerqRv~I------A~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~-~-g-~Tvi~~~H~~~~~i~~~ 362 (746)
.+..||||||+|++| |++++.+|++++|||||++||+.....+.+.|+...+ . | .|+|++||++. ....
T Consensus 798 ~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~--~~~~ 875 (895)
T PRK01156 798 GIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRE--LLSV 875 (895)
T ss_pred ccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchH--HHHh
Confidence 456899999999975 5899999999999999999999999999999986543 3 3 48999999975 4578
Q ss_pred cCEEEEEe
Q 004537 363 FDKLILLG 370 (746)
Q Consensus 363 ~D~i~vL~ 370 (746)
||+++.+.
T Consensus 876 ~d~ii~~~ 883 (895)
T PRK01156 876 ADVAYEVK 883 (895)
T ss_pred cCeEEEEE
Confidence 99999998
|
|
| >cd01131 PilT Pilus retraction ATPase PilT | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.1e-08 Score=103.72 Aligned_cols=57 Identities=23% Similarity=0.347 Sum_probs=42.9
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEEe
Q 004537 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG 370 (746)
Q Consensus 305 ~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL~ 370 (746)
+|+++|..+|+++++|||. |.++...++ +.+..|..++.++|.++. ....||++.+.
T Consensus 66 ~i~~aLr~~pd~ii~gEir---d~e~~~~~l----~~a~~G~~v~~t~Ha~~~--~~~~~Rl~~l~ 122 (198)
T cd01131 66 ALKAALRQDPDVILVGEMR---DLETIRLAL----TAAETGHLVMSTLHTNSA--AKTIDRIIDVF 122 (198)
T ss_pred HHHHHhcCCcCEEEEcCCC---CHHHHHHHH----HHHHcCCEEEEEecCCcH--HHHHhHHHhhc
Confidence 5788999999999999996 665433333 345569999999999763 46678887664
|
PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility. |
| >PRK06067 flagellar accessory protein FlaH; Validated | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.6e-08 Score=103.52 Aligned_cols=164 Identities=19% Similarity=0.211 Sum_probs=97.5
Q ss_pred cceece-EEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEecCCcCCCCCCHHHH
Q 004537 171 DILNGI-TGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKET 249 (746)
Q Consensus 171 ~iL~~v-s~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~ 249 (746)
.-|+.+ .+=+++|.++.|.|++|+|||||...++-... . .| +++.|+..+. +..+.
T Consensus 12 ~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~--~-~g--------------~~~~y~~~e~------~~~~~ 68 (234)
T PRK06067 12 EELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGAL--K-QG--------------KKVYVITTEN------TSKSY 68 (234)
T ss_pred HHHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHH--h-CC--------------CEEEEEEcCC------CHHHH
Confidence 345554 55799999999999999999999998852110 1 11 2345555432 33333
Q ss_pred HHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHHHHHhh--CCCEEEEeCCCCC--
Q 004537 250 LTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIII--NPSLLFLDEPTSG-- 325 (746)
Q Consensus 250 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~--~p~illLDEPTsg-- 325 (746)
+.-...... .. .+.+. .|.-...+.... .....+.++++.+.....++. +|+++++||||+.
T Consensus 69 ~~~~~~~g~--~~---------~~~~~-~g~l~i~~~~~~--~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~ 134 (234)
T PRK06067 69 LKQMESVKI--DI---------SDFFL-WGYLRIFPLNTE--GFEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFAT 134 (234)
T ss_pred HHHHHHCCC--Ch---------hHHHh-CCCceEEecccc--ccccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHh
Confidence 222111110 00 01100 011111111110 112356788999999999997 9999999999964
Q ss_pred -CCHHHHHHHHHHHHHHHHCCCEEEEEecCCCh------HHHhccCEEEEEeC
Q 004537 326 -LDSTTALRIVQMLQDIAEAGKTVVTTIHQPSS------RLFHKFDKLILLGK 371 (746)
Q Consensus 326 -LD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~------~i~~~~D~i~vL~~ 371 (746)
+|.....++++.++.+++.|.|+++++|+... .+...+|-++.|+.
T Consensus 135 ~~~~~~~~~~l~~l~~l~~~g~tvllt~~~~~~~~~~~~~~~~l~DgvI~L~~ 187 (234)
T PRK06067 135 YAEEDDILNFLTEAKNLVDLGKTILITLHPYAFSEELLSRIRSICDVYLKLRA 187 (234)
T ss_pred cCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcCCHHHHHHHHhheEEEEEEEe
Confidence 45555556666677777779999999998653 13455677776653
|
|
| >TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
Probab=98.81 E-value=4.8e-09 Score=132.48 Aligned_cols=76 Identities=18% Similarity=0.287 Sum_probs=66.9
Q ss_pred cccCCCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEE
Q 004537 292 FVRGVSGGERKRVCIGNEII----INPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLI 367 (746)
Q Consensus 292 ~~~~LSGGerqRv~IA~aL~----~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~ 367 (746)
.+..||||||+|++||++++ .+|+++||||||++||+.+...+.+.|+.+++ +.++|++||++.. ...||+++
T Consensus 1086 ~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~-~~~~i~~sh~~~~--~~~~d~~~ 1162 (1179)
T TIGR02168 1086 NLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSK-NTQFIVITHNKGT--MEVADQLY 1162 (1179)
T ss_pred cccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhcc-CCEEEEEEcChhH--HHHhhhHe
Confidence 45689999999999999984 67799999999999999999999999999875 5789999999763 57799997
Q ss_pred EEe
Q 004537 368 LLG 370 (746)
Q Consensus 368 vL~ 370 (746)
.+.
T Consensus 1163 ~~~ 1165 (1179)
T TIGR02168 1163 GVT 1165 (1179)
T ss_pred eee
Confidence 654
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. |
| >cd01125 repA Hexameric Replicative Helicase RepA | Back alignment and domain information |
|---|
Probab=98.74 E-value=5.7e-08 Score=101.36 Aligned_cols=136 Identities=21% Similarity=0.386 Sum_probs=83.6
Q ss_pred CeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECC-EeCChhccCcEEEEecCCcCCCCCCHHHHHHHHHhccCCCC
Q 004537 183 GEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYND-HPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNT 261 (746)
Q Consensus 183 Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G-~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~ 261 (746)
|++..|+||+|+|||||.-.++=.. ..|.=.+++ ... ....++-|+.=|+
T Consensus 1 g~~~ll~g~~G~GKS~lal~la~~v----a~G~~~~g~~~~~--~~~~~Vlyi~~Ed----------------------- 51 (239)
T cd01125 1 GYVSALVAPGGTGKSSLLLVLALAM----ALGKNLFGGGLKV--TEPGRVVYLSAED----------------------- 51 (239)
T ss_pred CceeEEEcCCCCCHHHHHHHHHHHH----hcCccccCCcccc--CCCceEEEEECCC-----------------------
Confidence 6789999999999999998876311 123212211 111 1123455554322
Q ss_pred CcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHHH----------------HHhhCCCEEEEeCCCC-
Q 004537 262 LTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGN----------------EIIINPSLLFLDEPTS- 324 (746)
Q Consensus 262 ~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~----------------aL~~~p~illLDEPTs- 324 (746)
+.++..+++..+...+++.+..+... ..+|+.|++.+++ ....+|+++++| |++
T Consensus 52 -~~~~i~~Rl~~i~~~~~~~~~~~rl~-------~~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviD-pl~~ 122 (239)
T cd01125 52 -PREEIHRRLEAILQHLEPDDAGDRLF-------IDSGRIQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVID-PLVS 122 (239)
T ss_pred -CHHHHHHHHHHHHhhcCCcCcccceE-------EeccCCCceecccCCcccccHHHHHHHHHHHhcCCCEEEEC-ChHH
Confidence 12233445555555555443322211 1244555554443 335799999999 765
Q ss_pred -----CCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCC
Q 004537 325 -----GLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPS 356 (746)
Q Consensus 325 -----gLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~ 356 (746)
.+|+.....+++.|++++++ |.|||+++|...
T Consensus 123 ~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K 160 (239)
T cd01125 123 FHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVRK 160 (239)
T ss_pred hCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccCc
Confidence 47999999999999999765 899999999864
|
RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent. |
| >TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.7e-08 Score=127.52 Aligned_cols=77 Identities=17% Similarity=0.242 Sum_probs=68.1
Q ss_pred cccCCCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEE
Q 004537 292 FVRGVSGGERKRVCIGNEIII----NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLI 367 (746)
Q Consensus 292 ~~~~LSGGerqRv~IA~aL~~----~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~ 367 (746)
.+..||||||++++||++++. +|+++|||||+++||+.....+.+.|+++++ +.++|++||++. .+..||+++
T Consensus 1071 ~~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~-~~~~i~~t~~~~--~~~~~d~~~ 1147 (1164)
T TIGR02169 1071 RLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAG-EAQFIVVSLRSP--MIEYADRAI 1147 (1164)
T ss_pred cchhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcC-CCeEEEEECcHH--HHHhcceeE
Confidence 356799999999999999985 6799999999999999999999999999865 578999999974 568999998
Q ss_pred EEeC
Q 004537 368 LLGK 371 (746)
Q Consensus 368 vL~~ 371 (746)
.+..
T Consensus 1148 ~~~~ 1151 (1164)
T TIGR02169 1148 GVTM 1151 (1164)
T ss_pred eEEE
Confidence 7753
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. |
| >PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=98.72 E-value=3.9e-08 Score=111.55 Aligned_cols=151 Identities=22% Similarity=0.280 Sum_probs=92.7
Q ss_pred cceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEecCCcCCCCCCHHHHH
Q 004537 171 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETL 250 (746)
Q Consensus 171 ~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l 250 (746)
.++++.+..++.|++++++||||+||||++..|++++. ...|. ++|++|.+|. + ..++.|+|
T Consensus 244 ~~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~--~~~G~-------------~kV~LI~~Dt--~-RigA~EQL 305 (484)
T PRK06995 244 PVLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCV--MRHGA-------------SKVALLTTDS--Y-RIGGHEQL 305 (484)
T ss_pred hhccCccccccCCcEEEEECCCCccHHHHHHHHHHHHH--HhcCC-------------CeEEEEeCCc--c-chhHHHHH
Confidence 35667777788999999999999999999999998542 11231 2578999886 2 47899999
Q ss_pred HHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHH-HHHHHHHHhhCC-----CEEEEeCCCC
Q 004537 251 TYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK-RVCIGNEIIINP-----SLLFLDEPTS 324 (746)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerq-Rv~IA~aL~~~p-----~illLDEPTs 324 (746)
.+.+.... ++........+......++.+....+| .+...+++. .+.-..+++.++ .+|+||.++.
T Consensus 306 r~~AeilG---Vpv~~~~~~~Dl~~aL~~L~d~d~VLI-----DTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~ 377 (484)
T PRK06995 306 RIYGKILG---VPVHAVKDAADLRLALSELRNKHIVLI-----DTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSH 377 (484)
T ss_pred HHHHHHhC---CCeeccCCchhHHHHHHhccCCCeEEe-----CCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCc
Confidence 98766432 111111122233334456665544433 232222322 234444555555 6899999988
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCEEEEEec
Q 004537 325 GLDSTTALRIVQMLQDIAEAGKTVVTTIH 353 (746)
Q Consensus 325 gLD~~~~~~i~~~L~~l~~~g~Tvi~~~H 353 (746)
+ ..+.+.++.....+.+-++.|+
T Consensus 378 ~------~~l~~i~~~f~~~~~~g~IlTK 400 (484)
T PRK06995 378 G------DTLNEVVQAYRGPGLAGCILTK 400 (484)
T ss_pred H------HHHHHHHHHhccCCCCEEEEeC
Confidence 7 3344455555444555555555
|
|
| >PRK02224 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.6e-08 Score=122.75 Aligned_cols=78 Identities=32% Similarity=0.456 Sum_probs=67.2
Q ss_pred ccCCCHHHHH------HHHHHHHHhhC-----C-CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCC-EEEEEecCCChHH
Q 004537 293 VRGVSGGERK------RVCIGNEIIIN-----P-SLLFLDEPTSGLDSTTALRIVQMLQDIAEAGK-TVVTTIHQPSSRL 359 (746)
Q Consensus 293 ~~~LSGGerq------Rv~IA~aL~~~-----p-~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~-Tvi~~~H~~~~~i 359 (746)
+..||||||+ |++|+++++.+ | +++|+||||++||+.....+.+.|+.+...|. +||++||++. .
T Consensus 779 ~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~~--~ 856 (880)
T PRK02224 779 PEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDDE--L 856 (880)
T ss_pred hhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECChH--H
Confidence 4689999999 89999998864 3 67999999999999999999999999876564 8999999975 3
Q ss_pred HhccCEEEEEeCC
Q 004537 360 FHKFDKLILLGKG 372 (746)
Q Consensus 360 ~~~~D~i~vL~~G 372 (746)
...||+++.|.+.
T Consensus 857 ~~~ad~~~~~~~~ 869 (880)
T PRK02224 857 VGAADDLVRVEKD 869 (880)
T ss_pred HHhcCeeEEeecC
Confidence 5679999999743
|
|
| >TIGR03238 dnd_assoc_3 dnd system-associated protein 3 | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.5e-08 Score=113.27 Aligned_cols=52 Identities=21% Similarity=0.285 Sum_probs=44.3
Q ss_pred ccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCC
Q 004537 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS 224 (746)
Q Consensus 170 ~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~ 224 (746)
+.+|++||+++++||+++|+|||||||||||+ +|.. .++.+|+|.++|.++.
T Consensus 19 ~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~-~~~sGg~I~ldg~~~~ 70 (504)
T TIGR03238 19 ERILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKR-KFSEGYEFFLDATHSF 70 (504)
T ss_pred HHHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCC-CCCCCCEEEECCEECC
Confidence 46899999999999999999999999999999 5543 3444448999999874
|
cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A. |
| >smart00382 AAA ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Probab=98.67 E-value=6.1e-07 Score=82.92 Aligned_cols=59 Identities=31% Similarity=0.329 Sum_probs=46.0
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH------HHHHHHHCCCEEEEEec
Q 004537 295 GVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQ------MLQDIAEAGKTVVTTIH 353 (746)
Q Consensus 295 ~LSGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~------~L~~l~~~g~Tvi~~~H 353 (746)
...+++..+..+.++--.+|+++++||+..-.+......... ........+..+|+++|
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 124 (148)
T smart00382 60 SGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTN 124 (148)
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeC
Confidence 467788888888888887899999999999999998877664 22222334778899988
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. |
| >COG0842 ABC-type multidrug transport system, permease component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.67 E-value=5e-06 Score=87.14 Aligned_cols=167 Identities=20% Similarity=0.292 Sum_probs=119.3
Q ss_pred hhHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHH-Hh
Q 004537 568 ERAMLSKERAADMYRLSAYFLARTTSDLPLNLVLPVLFLVIVYFMAGLRMGAGPFFLSMLTVFLSIVAAQGLGLAIG-AI 646 (746)
Q Consensus 568 eR~v~~rEr~~g~Y~~~ay~la~~l~~lP~~~~~~~if~~ivY~m~gl~~~~~~Ff~f~l~~~l~~~~~~slg~~i~-a~ 646 (746)
++..+.|=..+...+ ..+++++.+...-...+...+...++.+..|.. ....++.+...+.+..+...++|.+++ ..
T Consensus 116 ~~g~~~~~~~sp~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~ 193 (286)
T COG0842 116 EFGTLERLLVSPVSR-LFILLGKIVPYLVVASLIAGLVLLVIAFLLGVP-FLGSLLLLLLLLLLLLLATVALGLLLSTFA 193 (286)
T ss_pred hhCcHHHHHhCCCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444433 567777777777666666666666666666732 233444445555566667777777666 35
Q ss_pred cCCHHHHHHHHHHHHHHHHHHhhcccC--CCccchhhhhccCHHHHHHHHHHHHHcCCCCCCCCCcccCchhhhHHHHHH
Q 004537 647 LMDLKKATTLASVTIMTFMLAGGYFVQ--EVPVFISWIRYMSFNFHTYKILLKIQYADISPIVNGMRTDSGFREVCALVA 724 (746)
Q Consensus 647 ~~~~~~A~~~~~~~~~~~~lf~Gf~i~--~ip~~~~Wl~yiS~~~yafeal~~nef~~~~~~~~g~~~~~~~~~~~iL~~ 724 (746)
..+.+.+..++.++..++.+++|.+.| .+|.|++|+.++.|..|+.+++-.....+.. .+..+.++++|++
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~l~g~~~p~~~~p~~~~~i~~~~P~t~~~~~~~~~~~~~~~-------~~~~~~~~~~l~~ 266 (286)
T COG0842 194 KSQLQCASAVGNLLILPLGFLSGVFFPLELLPAWLQGISYINPLTYAIDALRYVYLGGWR-------NDGIWISLLILLL 266 (286)
T ss_pred hhHHHHHHHHHHHHHHHHHHHccccCchhhhHHHHHHHHHHccHHHHHHHHHHHHhCCCc-------hhhHHHHHHHHHH
Confidence 566778888888888999999999998 7999999999999999999998766543321 1225667889999
Q ss_pred HHHHHHHHHHHHHHHhhhh
Q 004537 725 MVFGYRLLAYLSLRKMKLH 743 (746)
Q Consensus 725 ~~~~f~~l~~~~L~~~~~~ 743 (746)
+.+++.+++...+|+..++
T Consensus 267 ~~~v~~~~~~~~~~~~~~~ 285 (286)
T COG0842 267 FAVVFLLLGLLLLRRRRKL 285 (286)
T ss_pred HHHHHHHHHHHHHHHhhhc
Confidence 9999999999999887653
|
|
| >TIGR01420 pilT_fam pilus retraction protein PilT | Back alignment and domain information |
|---|
Probab=98.54 E-value=6.6e-07 Score=98.48 Aligned_cols=56 Identities=21% Similarity=0.355 Sum_probs=42.5
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCEEEEE
Q 004537 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL 369 (746)
Q Consensus 305 ~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~i~vL 369 (746)
+++++|-.+|+++++||+. |+.+....++ .+..|.+|+.++|-.+. ....+|++-|
T Consensus 187 ~l~~~lr~~pd~i~vgEir---d~~~~~~~l~----aa~tGh~v~~T~Ha~~~--~~~~~Rl~~~ 242 (343)
T TIGR01420 187 ALRAALREDPDVILIGEMR---DLETVELALT----AAETGHLVFGTLHTNSA--AQTIERIIDV 242 (343)
T ss_pred HHHHhhccCCCEEEEeCCC---CHHHHHHHHH----HHHcCCcEEEEEcCCCH--HHHHHHHHHh
Confidence 4677888999999999997 8888765444 34569999999998653 3556776544
|
This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation. |
| >PRK13891 conjugal transfer protein TrbE; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=8.6e-07 Score=108.37 Aligned_cols=52 Identities=21% Similarity=0.233 Sum_probs=47.7
Q ss_pred HHHHHhhCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHHCCCEEEEEecCCCh
Q 004537 306 IGNEIIINPSLLFLDEPTSGL-DSTTALRIVQMLQDIAEAGKTVVTTIHQPSS 357 (746)
Q Consensus 306 IA~aL~~~p~illLDEPTsgL-D~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~ 357 (746)
|++++..+|+++++|||+.+| |+..+..+.+.++.+.+.|.+++++||++..
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~g~~vil~TQs~~d 732 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKANCLVLMATQSLSD 732 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 677888999999999999999 7999999999999998889999999999764
|
|
| >TIGR01248 drrC daunorubicin resistance protein C | Back alignment and domain information |
|---|
Probab=98.49 E-value=5e-06 Score=80.87 Aligned_cols=129 Identities=13% Similarity=0.053 Sum_probs=92.9
Q ss_pred hHHhhHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCCh--HHHHHHHHHHHHHHHHHHHHHHH
Q 004537 565 FPQERAMLSKERAADMYRLSAYFLARTTSDLPLNLVLPVLFLVIVYFMAGLRMGA--GPFFLSMLTVFLSIVAAQGLGLA 642 (746)
Q Consensus 565 ~~~eR~v~~rEr~~g~Y~~~ay~la~~l~~lP~~~~~~~if~~ivY~m~gl~~~~--~~Ff~f~l~~~l~~~~~~slg~~ 642 (746)
.-.|+.++.|-+..-. +.+.|+++|++...-..+++.++..++.+++ |.+.+. ...+.+++...+...+...++..
T Consensus 14 ~dr~~G~~~~l~~tP~-~~~~~~~g~~l~~~~~~~~~~~ii~~v~~~~-g~~~~~~~~~~~~~~~~~~l~~~~f~~l~~~ 91 (152)
T TIGR01248 14 IDREIGLLSRLWVLPI-HRASALLARIIAETIRAFIGTILILAIALAL-GFRFRNGVAAALLFLLIPSIFGIAFAALVMA 91 (152)
T ss_pred HHHHhHHHHHHHhCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457788888888777 6789999999999999999888777777544 887663 22223333333344444555566
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHHHHhhcccC--CCccchhhhhccCHHHHHHHHHH
Q 004537 643 IGAILMDLKKATTLASVTIMTFMLAGGYFVQ--EVPVFISWIRYMSFNFHTYKILL 696 (746)
Q Consensus 643 i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~--~ip~~~~Wl~yiS~~~yafeal~ 696 (746)
++...++.+..+ ...++.+|+++.+|.+.| .+|.|++|+.+++|..|+.+++=
T Consensus 92 ~a~~~~~~~~~~-~~~~v~~pl~flsg~~~P~~~mP~wlq~ia~~~Plt~~~~~~R 146 (152)
T TIGR01248 92 MALRKEGRFAME-ALELAQAAAAFLNPGATPIKLFPDWAQPLIAHQPISPAIEACA 146 (152)
T ss_pred HHHHcCCHHHHH-HHHHHHHHHHHHhhhhcCHHhCcHHHHHHHhhCCccHHHHHHH
Confidence 655555554433 446667787788888888 89999999999999999999873
|
The model describes daunorubicin resistance protein C in bacteria. This protein confers the function of daunorubicin resistance. The protein seems to share strong sequence similarity to UvrA proteins, which are involved in excision repair of DNA. Disruption of drrC gene showed increased sensitivity upon exposure to duanorubicin. However it failed to complement uvrA mutants to exposure to UV irradiation. The mechanism on how it confers duanomycin resistance is unclear, but has been suggested to be different from DrrA and DrrB which are antiporters. |
| >TIGR00611 recf recF protein | Back alignment and domain information |
|---|
Probab=98.47 E-value=2.4e-07 Score=102.68 Aligned_cols=59 Identities=22% Similarity=0.303 Sum_probs=54.7
Q ss_pred CCCHHHHHHHHHHHHHhh---------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCC
Q 004537 295 GVSGGERKRVCIGNEIII---------NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPS 356 (746)
Q Consensus 295 ~LSGGerqRv~IA~aL~~---------~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~ 356 (746)
.+|.||+|++.||..|+. +|+||+||||+++||+..+..+++.|.+. |.+|++++|++.
T Consensus 275 ~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~---~~qv~it~~~~~ 342 (365)
T TIGR00611 275 FASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL---GVQVFVTAISLD 342 (365)
T ss_pred hcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc---CCEEEEEecChh
Confidence 599999999999999999 99999999999999999999999999753 679999999864
|
All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family | Back alignment and domain information |
|---|
Probab=98.46 E-value=5.6e-08 Score=100.52 Aligned_cols=33 Identities=27% Similarity=0.454 Sum_probs=27.6
Q ss_pred ceece-EEEEeCCeEEEEECCCCccHHHHHHHHH
Q 004537 172 ILNGI-TGSVNPGEVLALMGPSGSGKTTLLNLLS 204 (746)
Q Consensus 172 iL~~v-s~~i~~Ge~~aIvGpsGsGKSTLL~~L~ 204 (746)
-|+++ .+-+++|++++|.||+|+|||||...++
T Consensus 8 ~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~ 41 (229)
T TIGR03881 8 GLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFA 41 (229)
T ss_pred hHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHH
Confidence 45553 4679999999999999999999988665
|
Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain. |
| >PRK14079 recF recombination protein F; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=3.1e-07 Score=101.32 Aligned_cols=76 Identities=16% Similarity=0.216 Sum_probs=63.1
Q ss_pred CCCHHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhccCE
Q 004537 295 GVSGGERKRVCIGNEII---------INPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDK 365 (746)
Q Consensus 295 ~LSGGerqRv~IA~aL~---------~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~D~ 365 (746)
-+|+||+|++.+|..|+ .+|++++||||+++||...+..+.+.|... ..++|.+++.+ ..+|+
T Consensus 263 ~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~---~q~~it~t~~~-----~~~~~ 334 (349)
T PRK14079 263 YASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASL---PQAIVAGTEAP-----PGAAL 334 (349)
T ss_pred hCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcC---CcEEEEcCCCC-----CCCce
Confidence 48999999999999998 899999999999999999999999888643 24555555443 56999
Q ss_pred EEEEeCCeEEEec
Q 004537 366 LILLGKGSLLYFG 378 (746)
Q Consensus 366 i~vL~~G~iv~~G 378 (746)
++.+.+|++.-..
T Consensus 335 ~~~~~~~~~~~~~ 347 (349)
T PRK14079 335 TLRIEAGVFTPEA 347 (349)
T ss_pred EEEEeccEecCCC
Confidence 9999999875443
|
|
| >TIGR02655 circ_KaiC circadian clock protein KaiC | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.5e-08 Score=116.39 Aligned_cols=167 Identities=18% Similarity=0.209 Sum_probs=99.2
Q ss_pred cceece-EEEEeCCeEEEEECCCCccHHHHHHHHH--cCCCCCCCccEEEECCEeCChhcc---CcEEEEecCCcCCCCC
Q 004537 171 DILNGI-TGSVNPGEVLALMGPSGSGKTTLLNLLS--GRLMEPTVGGSITYNDHPYSKSLK---SKIGFVTQDDVLFPHL 244 (746)
Q Consensus 171 ~iL~~v-s~~i~~Ge~~aIvGpsGsGKSTLL~~L~--G~~~~~~~~G~I~~~G~~~~~~~~---~~i~yv~Q~~~l~~~l 244 (746)
+-|+.+ .+=+++|..+.|.||+|||||||..-.+ |.. .. -+.-+++....-.++++ +..|+..++..--
T Consensus 8 ~gLD~il~GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~-~~-ge~~lyvs~eE~~~~l~~~~~~~G~~~~~~~~~--- 82 (484)
T TIGR02655 8 EGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGII-HF-DEPGVFVTFEESPQDIIKNARSFGWDLQKLVDE--- 82 (484)
T ss_pred hhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHH-hC-CCCEEEEEEecCHHHHHHHHHHcCCCHHHHhhc---
Confidence 345664 5678999999999999999999988663 311 10 12345554433222221 2344443321100
Q ss_pred CHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHH--HHHhhCCCEEEEeCC
Q 004537 245 TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG--NEIIINPSLLFLDEP 322 (746)
Q Consensus 245 TV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA--~aL~~~p~illLDEP 322 (746)
+++.+ . . .... .....+++.+++.+..+.. .+.+|+|++|||.|+ .+|..+|+..
T Consensus 83 ---g~l~~-----~-~-~~~~---~~~~~~~~~~~l~~~l~~i-----~~~ls~g~~qRVvIDSl~aL~~~~~~~----- 139 (484)
T TIGR02655 83 ---GKLFI-----L-D-ASPD---PEGQDVVGGFDLSALIERI-----NYAIRKYKAKRVSIDSVTAVFQQYDAV----- 139 (484)
T ss_pred ---CceEE-----E-e-cCch---hccccccccCCHHHHHHHH-----HHHHHHhCCcEEEEeehhHhhhhcCch-----
Confidence 00000 0 0 0000 0011123344444444432 357999999999999 6666665543
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChH-------H-HhccCEEEEEe
Q 004537 323 TSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSR-------L-FHKFDKLILLG 370 (746)
Q Consensus 323 TsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~-------i-~~~~D~i~vL~ 370 (746)
...+..+.+.++.+++.|+|+|+++|++... + ..++|.|+.|+
T Consensus 140 -----~~~r~~l~~Li~~L~~~g~TvLLtsh~~~~~~~~~~~~~~e~laDgVI~L~ 190 (484)
T TIGR02655 140 -----SVVRREIFRLVARLKQIGVTTVMTTERIEEYGPIARYGVEEFVSDNVVILR 190 (484)
T ss_pred -----HHHHHHHHHHHHHHHHCCCEEEEEecCcccccccccCCceeEeeeeEEEEE
Confidence 4677889999999888899999999986420 1 45789999987
|
Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. |
| >TIGR01026 fliI_yscN ATPase FliI/YscN family | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.6e-06 Score=97.94 Aligned_cols=175 Identities=21% Similarity=0.261 Sum_probs=107.9
Q ss_pred cccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh------------hccCcEEEEec
Q 004537 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK------------SLKSKIGFVTQ 236 (746)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~------------~~~~~i~yv~Q 236 (746)
+..+++++ +.+.+||.++|+|+||+|||||+++|+|.. . +..|.+...|..-.+ .+++.+.++.+
T Consensus 150 Gi~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~-~-~~~~vi~~iG~r~~ev~~~~~~~~~~~~l~~tvvv~~~ 226 (440)
T TIGR01026 150 GVRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNT-E-ADVNVIALIGERGREVREFIEHDLGEEGLKRSVVVVAT 226 (440)
T ss_pred eeeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCC-C-CCEEEEEEEeecchHHHHHHHHHhcccccceEEEEEEC
Confidence 35789999 999999999999999999999999999854 3 345666665554321 11233444444
Q ss_pred CCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHH-HHHhhCCC
Q 004537 237 DDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG-NEIIINPS 315 (746)
Q Consensus 237 ~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA-~aL~~~p~ 315 (746)
.+. +..+-..-+ ..... +.|.+...|- |..+- ...|+ |.+=| |++.
T Consensus 227 ~d~-----~p~~r~~~~-----------~~a~t-~AE~frd~G~----~Vll~---~DslT-----r~A~A~REis---- 273 (440)
T TIGR01026 227 SDQ-----SPLLRLKGA-----------YVATA-IAEYFRDQGK----DVLLL---MDSVT-----RFAMAQREIG---- 273 (440)
T ss_pred CCC-----CHHHHHHHH-----------HHHHH-HHHHHHHCCC----CEEEE---EeChH-----HHHHHHHHHH----
Confidence 332 121111100 00011 2222322232 22211 11222 11111 1111
Q ss_pred EEEEeCC--CCCCCHHHHHHHHHHHHHHHHCCC-------EEEEEecCCChHHHhccCEEEEEeCCeEEEecCHHHH
Q 004537 316 LLFLDEP--TSGLDSTTALRIVQMLQDIAEAGK-------TVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (746)
Q Consensus 316 illLDEP--TsgLD~~~~~~i~~~L~~l~~~g~-------Tvi~~~H~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 383 (746)
+.+.|| +.|+|+.....+-+++.+....+. ||++..||..+ ..+|++.-+.+|+++..++..+.
T Consensus 274 -l~~ge~P~~~Gypp~~~~~l~~l~ERag~~~~GSIT~i~tVl~~~~d~~d---pi~d~~~~i~dG~ivLsr~la~~ 346 (440)
T TIGR01026 274 -LAAGEPPATKGYTPSVFSTLPRLLERAGASGKGSITAFYTVLVEGDDMNE---PIADSVRGILDGHIVLSRALAQR 346 (440)
T ss_pred -HhcCCCCcccccChhHHHHHHHHHHHhccCCCCeeeEEEEEEccCcCCCc---chhhhhccccceEEEEecchhhC
Confidence 345675 459999999999999998876667 88889999754 56899999999999999987663
|
This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins. |
| >cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases | Back alignment and domain information |
|---|
Probab=98.40 E-value=7.3e-07 Score=89.53 Aligned_cols=84 Identities=25% Similarity=0.176 Sum_probs=61.6
Q ss_pred ceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCC-hhccCcEEEEecCC--cCCCCCCHHH
Q 004537 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS-KSLKSKIGFVTQDD--VLFPHLTVKE 248 (746)
Q Consensus 172 iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~-~~~~~~i~yv~Q~~--~l~~~lTV~E 248 (746)
..+=+.+.+++|+.++|+||||||||||+++|+|... +..|.|.+++..-. ...+..++++.|.+ ...+..|+.+
T Consensus 14 ~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~--~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (186)
T cd01130 14 QAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIP--PDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMAD 91 (186)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcC--CCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHH
Confidence 4455556789999999999999999999999998653 45799999774321 12234567766654 3466789999
Q ss_pred HHHHHHhcc
Q 004537 249 TLTYAALLR 257 (746)
Q Consensus 249 ~l~~~~~~~ 257 (746)
.+..+.+..
T Consensus 92 ~l~~~lR~~ 100 (186)
T cd01130 92 LLRSALRMR 100 (186)
T ss_pred HHHHHhccC
Confidence 998876543
|
The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase. |
| >PRK07196 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.39 E-value=2.9e-07 Score=103.20 Aligned_cols=172 Identities=20% Similarity=0.241 Sum_probs=104.9
Q ss_pred cccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCC--ccEEEECCEeCCh----------hccCcEEEEec
Q 004537 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTV--GGSITYNDHPYSK----------SLKSKIGFVTQ 236 (746)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~--~G~I~~~G~~~~~----------~~~~~i~yv~Q 236 (746)
...+|+++ +++.+|++++|+|+||+|||||+++|+|.. .+.. -|.|-.+|.++.+ ..+..+++++|
T Consensus 142 Gi~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~-~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~ 219 (434)
T PRK07196 142 GVNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYT-QADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPA 219 (434)
T ss_pred ceeeccce-EeEecceEEEEECCCCCCccHHHHHHhccc-CCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecC
Confidence 45799999 999999999999999999999999999854 3321 2445555554432 12456899999
Q ss_pred CCcCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHc-CCCccccccccCccccCCCHHHHHH-HHHHHHHhhCC
Q 004537 237 DDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL-GLERCQDTMIGGSFVRGVSGGERKR-VCIGNEIIINP 314 (746)
Q Consensus 237 ~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l-gL~~~~~~~vg~~~~~~LSGGerqR-v~IA~aL~~~p 314 (746)
++..+..+++.|++.+.+....... .+++=.+ .+...+ |-+| +++
T Consensus 220 d~s~~~rl~a~e~a~~iAEyfr~~g----------~~Vll~~Dsltr~a---------------~A~REisl-------- 266 (434)
T PRK07196 220 DESPLMRIKATELCHAIATYYRDKG----------HDVLLLVDSLTRYA---------------MAQREIAL-------- 266 (434)
T ss_pred CCChhhhHHHHHHHHHHHHHhhhcc----------CCEEEeecchhHHH---------------hhhhHHHH--------
Confidence 9999989999999887664321000 0010000 001111 1111 111
Q ss_pred CEEEEeCC--CCCCCHHHHHHHHHHHHHHHH---CC-CEEEEEecCCChHHH-hccCEEEEEeCCeEEEec
Q 004537 315 SLLFLDEP--TSGLDSTTALRIVQMLQDIAE---AG-KTVVTTIHQPSSRLF-HKFDKLILLGKGSLLYFG 378 (746)
Q Consensus 315 ~illLDEP--TsgLD~~~~~~i~~~L~~l~~---~g-~Tvi~~~H~~~~~i~-~~~D~i~vL~~G~iv~~G 378 (746)
.+.|| +.|-.+..-..+-+++.+--+ .| .|.+.+..-+..++- -.+|.+.-+-||+|+..-
T Consensus 267 ---~~ge~P~~~Gyp~svf~~l~~l~ERag~~~~~GSIT~~~tVl~~~dD~~dpi~d~~~~ilDG~ivLsr 334 (434)
T PRK07196 267 ---SLGEPPATKGYPPSAFSIIPRLAESAGNSSGNGTMTAIYTVLAEGDDQQDPIVDCARAVLDGHIVLSR 334 (434)
T ss_pred ---hcCCCCcccCcCHHHHHHhHHHHHHhhcCCCCEEeeeeeEEEccCCCCCCchhHhhhhhcceEEEEcH
Confidence 22344 236766666666666665421 12 466666654433322 246788888899998853
|
|
| >COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.38 E-value=1e-06 Score=108.87 Aligned_cols=78 Identities=27% Similarity=0.423 Sum_probs=69.4
Q ss_pred cccCCCHHHHHHHHHHHHHh------hC--CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCChHHHhcc
Q 004537 292 FVRGVSGGERKRVCIGNEII------IN--PSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKF 363 (746)
Q Consensus 292 ~~~~LSGGerqRv~IA~aL~------~~--p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~~i~~~~ 363 (746)
.+..|||||+-.++||.+|+ .+ -+.|||||||..||+.+...+++.|.++...+.+|++|||++ ++.+.+
T Consensus 812 ~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~~~qiiIISH~e--el~e~~ 889 (908)
T COG0419 812 PIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQIIIISHVE--ELKERA 889 (908)
T ss_pred ccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeChH--HHHHhC
Confidence 56789999999988887764 35 699999999999999999999999999988899999999995 467889
Q ss_pred CEEEEEeC
Q 004537 364 DKLILLGK 371 (746)
Q Consensus 364 D~i~vL~~ 371 (746)
|.++.++.
T Consensus 890 ~~~i~V~k 897 (908)
T COG0419 890 DVRIRVKK 897 (908)
T ss_pred CeEEEEEe
Confidence 99998875
|
|
| >cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2 | Back alignment and domain information |
|---|
Probab=98.33 E-value=5e-07 Score=91.39 Aligned_cols=112 Identities=18% Similarity=0.222 Sum_probs=65.8
Q ss_pred EEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEecCCcCCCCCCHHHHHHHHHh-ccCCCCCc
Q 004537 185 VLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAAL-LRLPNTLT 263 (746)
Q Consensus 185 ~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~-~~~~~~~~ 263 (746)
+++|.||||||||||.+.|++.+ . .|. +.++++|+.+. .++..+....... ...|..
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l---~-~~~---------------~~v~~~D~~~~-~~~~~~~~~~~~~~~~~~~~-- 58 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL---G-NPK---------------VVIISQDSYYK-DLSHEELEERKNNNYDHPDA-- 58 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh---C-CCC---------------eEEEEeccccc-ccccccHHHhccCCCCCCCc--
Confidence 57999999999999999999854 1 222 34555554332 2333333222111 111111
Q ss_pred HHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 004537 264 KQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDS 328 (746)
Q Consensus 264 ~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~illLDEPTsgLD~ 328 (746)
...+...+.+..+...+..+.. ....|.|++++..+ .+.+|+++|+|+|..+.++
T Consensus 59 --~~~~~~~~~l~~l~~~~~~~~p-----~~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~ 113 (198)
T cd02023 59 --FDFDLLISHLQDLKNGKSVEIP-----VYDFKTHSRLKETV---TVYPADVIILEGILALYDK 113 (198)
T ss_pred --ccHHHHHHHHHHHHCCCCEecc-----ccccccCcccCCce---ecCCCCEEEEechhhccch
Confidence 1223344566665544332222 24577777776554 5678999999999999986
|
7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine. |
| >PRK06002 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.30 E-value=1.7e-06 Score=97.21 Aligned_cols=83 Identities=20% Similarity=0.254 Sum_probs=64.2
Q ss_pred CceEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECC---EeC
Q 004537 147 PIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYND---HPY 223 (746)
Q Consensus 147 ~~~l~~~nvs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G---~~~ 223 (746)
+..++.++++..|. ....+++.++ .+.+||.++|+||||+|||||+++|++.. . +..|.|.+.| .++
T Consensus 137 p~~~~r~~v~~~l~-------TGi~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~-~-pd~gvv~liGergrev 206 (450)
T PRK06002 137 PPAMTRARVETGLR-------TGVRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARAD-A-FDTVVIALVGERGREV 206 (450)
T ss_pred CCCeEeecceEEcC-------CCcEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCC-C-CCeeeeeecccCCccH
Confidence 34588999988773 2357889886 99999999999999999999999999743 3 4578888864 444
Q ss_pred Ch--------hccCcEEEEecCCc
Q 004537 224 SK--------SLKSKIGFVTQDDV 239 (746)
Q Consensus 224 ~~--------~~~~~i~yv~Q~~~ 239 (746)
.. ..++.|++|+|.+.
T Consensus 207 ~e~~~~~l~~~r~rtI~vV~qsd~ 230 (450)
T PRK06002 207 REFLEDTLADNLKKAVAVVATSDE 230 (450)
T ss_pred HHHhHHHHHHhhCCeEEEEEcCCC
Confidence 31 12467999999874
|
|
| >PRK05399 DNA mismatch repair protein MutS; Provisional | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.4e-06 Score=106.38 Aligned_cols=138 Identities=20% Similarity=0.232 Sum_probs=86.5
Q ss_pred ccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEecCCcCCCCCCHHHH
Q 004537 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKET 249 (746)
Q Consensus 170 ~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~ 249 (746)
..|-+|+++. +.+.++.|.|||++||||+||.++-... -..-| +|||-+..- +++.+.
T Consensus 595 ~~vpnd~~l~-~~~~~~iiTGpN~~GKSt~lr~v~l~~i-lAq~G-----------------~~VPa~~a~---i~~~d~ 652 (854)
T PRK05399 595 PFVPNDCDLD-EERRLLLITGPNMAGKSTYMRQVALIVL-LAQIG-----------------SFVPAESAR---IGIVDR 652 (854)
T ss_pred ceEecceeeC-CCCcEEEEECCCCCCcHHHHHHHHHHHH-HHhcC-----------------CceeccceE---ecccCe
Confidence 4577888888 6778999999999999999999873110 00011 233332211 111111
Q ss_pred HHHHHhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHHHHHhh--CCCEEEEeCC---CC
Q 004537 250 LTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIII--NPSLLFLDEP---TS 324 (746)
Q Consensus 250 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~--~p~illLDEP---Ts 324 (746)
+..++|-. |. ...++|--+.....++..|-. +++++|+||| |+
T Consensus 653 ------------------------I~triga~---d~-----i~~g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs 700 (854)
T PRK05399 653 ------------------------IFTRIGAS---DD-----LASGRSTFMVEMTETANILNNATERSLVLLDEIGRGTS 700 (854)
T ss_pred ------------------------eeeccCcc---cc-----cccCcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCC
Confidence 11112211 11 124677766777777776654 8999999999 99
Q ss_pred CCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCChHHHhccCE
Q 004537 325 GLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDK 365 (746)
Q Consensus 325 gLD~~~~~~i~~~L~~l~~~-g~Tvi~~~H~~~~~i~~~~D~ 365 (746)
.+|..+ .....++.+.+. |.++|++||.. ++.+++|+
T Consensus 701 ~~dg~a--ia~aile~l~~~~~~~~l~aTH~~--el~~l~~~ 738 (854)
T PRK05399 701 TYDGLS--IAWAVAEYLHDKIGAKTLFATHYH--ELTELEEK 738 (854)
T ss_pred cchhHH--HHHHHHHHHHhcCCceEEEEechH--HHHHHhhh
Confidence 999544 455566666655 58999999993 46677664
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=98.22 E-value=6.5e-06 Score=104.27 Aligned_cols=164 Identities=16% Similarity=0.233 Sum_probs=90.4
Q ss_pred eceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEecCCcCCCCCCHHHHHHHH
Q 004537 174 NGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYA 253 (746)
Q Consensus 174 ~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~ 253 (746)
.=+++..+.+++++|+|++|+|||||++.+.+++.. ...|.+++++..+.... .. +-.++... .+..
T Consensus 198 ~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~-~F~g~vfv~~~~v~~~~-~~--~~~~~~~~-------~~~~-- 264 (1153)
T PLN03210 198 SLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSR-QFQSSVFIDRAFISKSM-EI--YSSANPDD-------YNMK-- 264 (1153)
T ss_pred HHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhh-cCCeEEEeeccccccch-hh--cccccccc-------cchh--
Confidence 335667788999999999999999999999876543 34799988763221100 00 00010000 0000
Q ss_pred HhccCCCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q 004537 254 ALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALR 333 (746)
Q Consensus 254 ~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~ 333 (746)
....++.+.++++..++. + ..+ ++.|+|+ ..++-+|+||+- |.. .
T Consensus 265 ----------~~l~~~~l~~il~~~~~~------~-----~~~-~~~~~~L------~~krvLLVLDdv----~~~---~ 309 (1153)
T PLN03210 265 ----------LHLQRAFLSEILDKKDIK------I-----YHL-GAMEERL------KHRKVLIFIDDL----DDQ---D 309 (1153)
T ss_pred ----------HHHHHHHHHHHhCCCCcc------c-----CCH-HHHHHHH------hCCeEEEEEeCC----CCH---H
Confidence 001122233444433331 1 112 5566663 345567788984 433 3
Q ss_pred HHHHHHHHH---HCCCEEEEEecCCChHHHhc-cCEEEEEeCCeEEEecCHHHHHHHHHhcCC
Q 004537 334 IVQMLQDIA---EAGKTVVTTIHQPSSRLFHK-FDKLILLGKGSLLYFGKASEAMAYFSSIGC 392 (746)
Q Consensus 334 i~~~L~~l~---~~g~Tvi~~~H~~~~~i~~~-~D~i~vL~~G~iv~~G~~~~~~~~f~~~G~ 392 (746)
.++.|.... ..|.+||+|||+... +... +|+++-+.. =+.+++.+.|...-+
T Consensus 310 ~l~~L~~~~~~~~~GsrIIiTTrd~~v-l~~~~~~~~~~v~~------l~~~ea~~LF~~~Af 365 (1153)
T PLN03210 310 VLDALAGQTQWFGSGSRIIVITKDKHF-LRAHGIDHIYEVCL------PSNELALEMFCRSAF 365 (1153)
T ss_pred HHHHHHhhCccCCCCcEEEEEeCcHHH-HHhcCCCeEEEecC------CCHHHHHHHHHHHhc
Confidence 344444432 348899999999542 2222 576655531 145678888876544
|
syringae 6; Provisional |
| >TIGR02680 conserved hypothetical protein TIGR02680 | Back alignment and domain information |
|---|
Probab=98.20 E-value=1.9e-06 Score=109.90 Aligned_cols=60 Identities=25% Similarity=0.388 Sum_probs=53.0
Q ss_pred ccCCCHHHHHHHH----HHHH--------HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEecCC
Q 004537 293 VRGVSGGERKRVC----IGNE--------IIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQP 355 (746)
Q Consensus 293 ~~~LSGGerqRv~----IA~a--------L~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~g~Tvi~~~H~~ 355 (746)
..+||||||||++ +|++ +..+|++++|||||+|||+.+...+++.+.++ |.++|+++|..
T Consensus 1245 ~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l---~~~~i~~s~~~ 1316 (1353)
T TIGR02680 1245 FGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL---DLDFVMTSERE 1316 (1353)
T ss_pred ccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh---CCCEEEEccch
Confidence 4689999999996 5655 45799999999999999999999999999887 78999999873
|
Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length. |
| >PRK13898 type IV secretion system ATPase VirB4; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=4.2e-05 Score=93.45 Aligned_cols=49 Identities=20% Similarity=0.239 Sum_probs=43.7
Q ss_pred HHhhCCCEEEEeCCCCCCC-HHHHHHHHHHHHHHHHCCCEEEEEecCCCh
Q 004537 309 EIIINPSLLFLDEPTSGLD-STTALRIVQMLQDIAEAGKTVVTTIHQPSS 357 (746)
Q Consensus 309 aL~~~p~illLDEPTsgLD-~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~ 357 (746)
.+..+|.++++|||...|| +..+..+.+.++.+.+.|..++++||++..
T Consensus 638 ~~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d 687 (800)
T PRK13898 638 SLDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRKLNTFVIFATQSVED 687 (800)
T ss_pred HhcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 3456899999999999999 889999999999998889999999999753
|
|
| >PRK09825 idnK D-gluconate kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.14 E-value=1.4e-06 Score=86.74 Aligned_cols=66 Identities=24% Similarity=0.352 Sum_probs=46.4
Q ss_pred CCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCChh--c-cCcEEEEecCCcCCCCCCHHHHHHHH
Q 004537 182 PGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS--L-KSKIGFVTQDDVLFPHLTVKETLTYA 253 (746)
Q Consensus 182 ~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~--~-~~~i~yv~Q~~~l~~~lTV~E~l~~~ 253 (746)
+||+++|+|+||||||||+++|+|++. -+.++|.++... . +...++.+|+...++..++.+++.+.
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~------~~~i~gd~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~ 70 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFS------AKFIDGDDLHPAKNIDKMSQGIPLTDEDRLPWLERLNDASYS 70 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcC------CEEECCcccCCHhHHHHHhcCCCCCcccchHHHHHHHHHHHH
Confidence 699999999999999999999998542 257888776421 2 22356777765555555666666543
|
|
| >cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases | Back alignment and domain information |
|---|
Probab=98.12 E-value=6.2e-05 Score=79.85 Aligned_cols=36 Identities=33% Similarity=0.467 Sum_probs=32.5
Q ss_pred ccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHc
Q 004537 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSG 205 (746)
Q Consensus 170 ~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G 205 (746)
.+.|+++.+-+.+|+++.|.|++|+|||||+..++.
T Consensus 17 ~~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~ 52 (271)
T cd01122 17 FPVLNKLTKGLRKGELIILTAGTGVGKTTFLREYAL 52 (271)
T ss_pred cceeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 457888888999999999999999999999998874
|
Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands. |
| >PRK13873 conjugal transfer ATPase TrbE; Provisional | Back alignment and domain information |
|---|
Probab=98.10 E-value=8.4e-05 Score=90.94 Aligned_cols=61 Identities=21% Similarity=0.253 Sum_probs=49.1
Q ss_pred hhCCCEEEEeCCCCCCC-HHHHHHHHHHHHHHHHCCCEEEEEecCCCh--------HHHhccCEEEEEeC
Q 004537 311 IINPSLLFLDEPTSGLD-STTALRIVQMLQDIAEAGKTVVTTIHQPSS--------RLFHKFDKLILLGK 371 (746)
Q Consensus 311 ~~~p~illLDEPTsgLD-~~~~~~i~~~L~~l~~~g~Tvi~~~H~~~~--------~i~~~~D~i~vL~~ 371 (746)
-.+|+++++|||+.+|| +..+..+.+.++.+.+.|.+++++||++.. .+.+.++-.++|.+
T Consensus 633 ~~~p~illlDE~~~~Ld~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d~~~s~~~~~il~n~~t~i~L~~ 702 (811)
T PRK13873 633 DGRPTLLILDEAWLFLDDPVFAAQLREWLKTLRKKNVSVIFATQSLADIDGSAIAPAIIESCPTRIFLPN 702 (811)
T ss_pred cCCCcEEEEcChhhhCCCHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHhcCchHHHHHHhCCeeEEcCC
Confidence 45899999999999999 788999999999998889999999999752 24445555555544
|
|
| >cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
Probab=97.99 E-value=5e-05 Score=70.84 Aligned_cols=55 Identities=18% Similarity=0.288 Sum_probs=40.2
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-----CCCEEEEEecCCC
Q 004537 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-----AGKTVVTTIHQPS 356 (746)
Q Consensus 301 rqRv~IA~aL~~~p~illLDEPTsgLD~~~~~~i~~~L~~l~~-----~g~Tvi~~~H~~~ 356 (746)
++..........++.++++||.-.. ++.....+.+.+..... .+.++|++++...
T Consensus 72 ~~~~~~~~~~~~~~~~lilDe~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 LVRLLFELAEKAKPGVLFIDEIDSL-SRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred hHhHHHHhhccCCCeEEEEeChhhh-hHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 4445556666778999999998765 56667778888887643 4678888888643
|
The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. |
| >TIGR00767 rho transcription termination factor Rho | Back alignment and domain information |
|---|
Probab=97.98 E-value=1.3e-05 Score=88.73 Aligned_cols=53 Identities=21% Similarity=0.300 Sum_probs=46.1
Q ss_pred ceEEEEeEEEEEeecccccccccccee-----------ceEEEEeCCeEEEEECCCCccHHHHHHHHHcCC
Q 004537 148 IYLKFTDVTYKVILKGMTSSEEKDILN-----------GITGSVNPGEVLALMGPSGSGKTTLLNLLSGRL 207 (746)
Q Consensus 148 ~~l~~~nvs~~~~~~~~~~~~~~~iL~-----------~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~ 207 (746)
..++|+||++.|+ .++.+|+ |+++.|.+|+.++|+||+|+|||||++.|+...
T Consensus 129 ~ri~Fe~LTf~YP-------~er~~Le~~~~~~~~R~id~~~pig~Gq~~~IvG~~g~GKTtL~~~i~~~I 192 (415)
T TIGR00767 129 NRVLFENLTPLYP-------NERLRLETSTEDLSTRVLDLFAPIGKGQRGLIVAPPKAGKTVLLQKIAQAI 192 (415)
T ss_pred CCeEEEEeeecCC-------CccceeecCccccceeeeeeEEEeCCCCEEEEECCCCCChhHHHHHHHHhh
Confidence 3599999999983 2346786 999999999999999999999999999999643
|
Members of this family differ in the specificity of RNA binding. |
| >COG1682 TagG ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.0036 Score=66.43 Aligned_cols=230 Identities=17% Similarity=0.242 Sum_probs=135.8
Q ss_pred HHHHHHHHHHHHHHH-hhcch--hHHH---HHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHH--HH
Q 004537 489 WIQQYTILFRRGIKE-HRHDY--FSWL---RITQVLATAVILGLLWWQSDSKSPKGLEDQAGLLFFIAVFWSFFPI--FT 560 (746)
Q Consensus 489 ~~~Q~~~L~~R~~~~-~R~~~--~~~~---r~~~~i~~ali~G~lf~~~~~~~~~~~~~~~g~lff~~~~~~~~~~--~~ 560 (746)
.++....|.+|.++. .|+.. ..|. =+++.++++++.|.++-.-+. +..-.++.-...+.|.+. ..
T Consensus 16 ~~~li~~L~~~eik~Ryr~s~LG~~W~~l~P~~~~~~~~~vf~~l~~~~~~-------~~~~~l~~G~~~w~f~~~~i~~ 88 (263)
T COG1682 16 YRRLIGALVKREIKTRYRRSVLGYLWSLLNPLLMILVYTLVFGALLRSPGL-------NFLAYLLAGLILWFFFSEAISE 88 (263)
T ss_pred HHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHhCCCc-------chHHHHHHHHHHHHHHHHHHHh
Confidence 456677888999985 56554 2343 234445555566655533211 122122222222222221 12
Q ss_pred HHHHhHHhhHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCChHHHHHHHHHHHHHHHHHHHHH
Q 004537 561 AIFTFPQERAMLSKERAADMYRLSAYFLARTTSDLPLNLVLPVLFLVIVYFMAGLRMGAGPFFLSMLTVFLSIVAAQGLG 640 (746)
Q Consensus 561 ~i~~~~~eR~v~~rEr~~g~Y~~~ay~la~~l~~lP~~~~~~~if~~ivY~m~gl~~~~~~Ff~f~l~~~l~~~~~~slg 640 (746)
+...+.+...++.|-+ .++..+.+++++.++-...+..++....+-+.-+.+ + .++......+.+..+.+.++|
T Consensus 89 ~~~s~~~n~~li~k~~----~p~~~~~~~~~~~~~~~~~i~~iiil~~~i~~~~~~-s-~~~l~~~~~l~~l~l~~~g~~ 162 (263)
T COG1682 89 GAGSVVANAALIKKIN----FPPLILPVARTLSRLFNFLIHLIIILIFLIILGVEP-S-WHWLLLLPALLLLILFSVGLG 162 (263)
T ss_pred HHHHhhhhHHHHhCCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-c-HHHHHHHHHHHHHHHHHHHHH
Confidence 3444555556555432 278899999999998766666666555555555544 3 344444445556666777778
Q ss_pred HHHHHhc---CCHHHHHHHHHHHHHHHHHHhhcccC--CCccchhhhhccCHHHHHHHHHHHHHcCCCCCCCCCcccCch
Q 004537 641 LAIGAIL---MDLKKATTLASVTIMTFMLAGGYFVQ--EVPVFISWIRYMSFNFHTYKILLKIQYADISPIVNGMRTDSG 715 (746)
Q Consensus 641 ~~i~a~~---~~~~~A~~~~~~~~~~~~lf~Gf~i~--~ip~~~~Wl~yiS~~~yafeal~~nef~~~~~~~~g~~~~~~ 715 (746)
+++|+++ +|.... -+.+.-+++..+|-+=+ .+|+.++|+.++||+.|-.|.+=..-+++..+ .
T Consensus 163 l~~a~l~v~fRD~~~i---~~~v~~~~f~~sPIi~~~~~~p~~~~~~~~~NP~~~iie~~R~~~~~~~~~---------~ 230 (263)
T COG1682 163 LILASLGVRFRDLGQI---LGVVLQLLFFLSPIIYPVSNLPEQLRELVLLNPLTHIIESFRAPLLGGDVP---------D 230 (263)
T ss_pred HHHHhHhhhcccHHHH---HHHHHHHHHHhCceeeehhhccHHHHHHHHHCcHHHHHHHHHHHHhCCCcc---------c
Confidence 8777664 554443 33444455556665543 79999999999999999999875555433222 2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhhh
Q 004537 716 FREVCALVAMVFGYRLLAYLSLRKMKLH 743 (746)
Q Consensus 716 ~~~~~iL~~~~~~f~~l~~~~L~~~~~~ 743 (746)
+.+.....+..++...++++..++.+++
T Consensus 231 ~~~~~~~~~~~li~l~vg~~~~~~~~~~ 258 (263)
T COG1682 231 LHLLVYILLLTLILLFVGLLLFRKFRKR 258 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3345556667777777888887776654
|
|
| >PRK06315 type III secretion system ATPase; Provisional | Back alignment and domain information |
|---|
Probab=97.96 E-value=1.7e-05 Score=89.37 Aligned_cols=106 Identities=18% Similarity=0.256 Sum_probs=67.3
Q ss_pred ccceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECC---EeCCh----hcc---CcEEEE-----
Q 004537 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYND---HPYSK----SLK---SKIGFV----- 234 (746)
Q Consensus 170 ~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G---~~~~~----~~~---~~i~yv----- 234 (746)
..+++++ +.+.+||.++|+|+||+|||||+++|+|.... ...|.|.+.| .++.+ .++ .+.+++
T Consensus 152 i~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~-~~~~vi~liGerg~ev~~~~~~~l~~~g~~~svvvvats 229 (442)
T PRK06315 152 VRCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEE-ADVNVIALIGERGREVREFIEGDLGEEGMKRSVIVVSTS 229 (442)
T ss_pred EEEEecc-ccccCCcEEEEECCCCCCcchHHHHhhccccc-CCceEEEEECCCchHHHHHHHHHHHhcCCceEEEEEeCC
Confidence 4689998 99999999999999999999999999985422 3346777755 44421 121 234555
Q ss_pred ecCCc--CCCCC---CHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHcCCC
Q 004537 235 TQDDV--LFPHL---TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE 281 (746)
Q Consensus 235 ~Q~~~--l~~~l---TV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~ 281 (746)
+|++. +.+.+ ++.|.+.. .....+...+...++.+++++++|.
T Consensus 230 ~q~p~~rlnp~~va~~IAE~~r~----~g~~Vl~~~Ds~tR~a~alreV~L~ 277 (442)
T PRK06315 230 DQSSQLRLNAAYVGTAIAEYFRD----QGKTVVLMMDSVTRFARALREVGLA 277 (442)
T ss_pred CCCHHHHhhHHHHHHHHHHHHHH----cCCCcchhhhHHHHHHHHHHHhCcC
Confidence 88763 22222 33443332 1111123345667777888888774
|
|
| >PRK00454 engB GTP-binding protein YsxC; Reviewed | Back alignment and domain information |
|---|
Probab=97.96 E-value=8.7e-05 Score=74.21 Aligned_cols=67 Identities=13% Similarity=0.200 Sum_probs=44.6
Q ss_pred HHHHHHHHcCCCccccccccCccccCCCHHHHHHHH--HHHHHhh-CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC
Q 004537 270 RAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC--IGNEIII-NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA 344 (746)
Q Consensus 270 ~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~--IA~aL~~-~p~illLDEPTsgLD~~~~~~i~~~L~~l~~~ 344 (746)
.+.+.++..+++- -.+++ ....+++||+|++. +.+.+-. +++++ |+|++|.....++.+.|.++.++
T Consensus 126 ~i~~~l~~~~~~~---iiv~n-K~Dl~~~~~~~~~~~~i~~~l~~~~~~~~----~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 126 QMIEWLKEYGIPV---LIVLT-KADKLKKGERKKQLKKVRKALKFGDDEVI----LFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred HHHHHHHHcCCcE---EEEEE-CcccCCHHHHHHHHHHHHHHHHhcCCceE----EEEcCCCCCHHHHHHHHHHHhcC
Confidence 3445555555431 12222 34568999999987 5555443 34443 99999999999999999988764
|
|
| >PF13555 AAA_29: P-loop containing region of AAA domain | Back alignment and domain information |
|---|
Probab=97.95 E-value=9.9e-06 Score=66.30 Aligned_cols=35 Identities=43% Similarity=0.757 Sum_probs=27.9
Q ss_pred eeceEEEEeC-CeEEEEECCCCccHHHHHHHHHcCC
Q 004537 173 LNGITGSVNP-GEVLALMGPSGSGKTTLLNLLSGRL 207 (746)
Q Consensus 173 L~~vs~~i~~-Ge~~aIvGpsGsGKSTLL~~L~G~~ 207 (746)
.++.++.+.+ |+++.|.||||||||||+++|.=.+
T Consensus 12 f~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 12 FDGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVL 47 (62)
T ss_pred cCCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3445667775 5699999999999999999987433
|
|
| >TIGR03518 ABC_perm_GldF gliding motility-associated ABC transporter permease protein GldF | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.0041 Score=65.11 Aligned_cols=152 Identities=18% Similarity=0.228 Sum_probs=92.6
Q ss_pred HHHHHHhhCCCC--------ChHHHHHHHHHHHHHHHHHHHH---HHhhhhhhccC--CCCChHHHHHHHHHHHHHHHHH
Q 004537 570 AMLSKERAADMY--------RLSAYFLARTTSDLPLNLVLPV---LFLVIVYFMAG--LRMGAGPFFLSMLTVFLSIVAA 636 (746)
Q Consensus 570 ~v~~rEr~~g~Y--------~~~ay~la~~l~~lP~~~~~~~---if~~ivY~m~g--l~~~~~~Ff~f~l~~~l~~~~~ 636 (746)
..+.+||++|.. +...++++|.+.-+-+.++..+ ++....++... -..+.+.++..++..++...+.
T Consensus 71 ~~ia~Er~~GTle~Llt~Pvs~~~ivlgK~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 150 (240)
T TIGR03518 71 RSFAEERKLGTLELLLTRPISDWQIILGKYLGSLTLVILALLPTLLYVFTIYQLGNPVGNLDIGSTFGSYIGLLLLGSVY 150 (240)
T ss_pred HHHHHHHHcCHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHH
Confidence 456677777653 4578899999988655443332 22222222211 1235666665555666777788
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcc-cCCC--ccchhhhhccCHHHHHHHHHHHHHcCCCCCCCCCcccC
Q 004537 637 QGLGLAIGAILMDLKKATTLASVTIMTFMLAGGYF-VQEV--PVFISWIRYMSFNFHTYKILLKIQYADISPIVNGMRTD 713 (746)
Q Consensus 637 ~slg~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~-i~~i--p~~~~Wl~yiS~~~yafeal~~nef~~~~~~~~g~~~~ 713 (746)
.++|.++|+++.+...|..++.... +.++.|+- +.++ |++.+|+.|+||.+|-.+. . +| .++
T Consensus 151 ~aig~~iSsl~~~q~~a~~~~~~~~--~~l~~~~~~l~~~~~~~~~~~l~~~sp~~~~~~~-~-----------~g-~i~ 215 (240)
T TIGR03518 151 TAIGLFASSLTENQIVAFIIAVFLC--FLFYFGFDGLASLLWGGSAYTISELGLSYHYESI-S-----------RG-VID 215 (240)
T ss_pred HHHHHHHHHHhchHHHHHHHHHHHH--HHHHHHHHHHhhhcchhHHHHHHHcCHHHHHHHH-H-----------cC-ccc
Confidence 8999999999998888765543332 22222221 3344 8889999999997774332 2 12 111
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHH
Q 004537 714 SGFREVCALVAMVFGYRLLAYLSLR 738 (746)
Q Consensus 714 ~~~~~~~iL~~~~~~f~~l~~~~L~ 738 (746)
+.++...+.+.+.+..++...++
T Consensus 216 --~~~~v~~~~~~~~~l~l~~~~~~ 238 (240)
T TIGR03518 216 --SRDVIYFLSITVLFLALTKLQLK 238 (240)
T ss_pred --HhHHHHHHHHHHHHHHHHHHHHh
Confidence 35667777777777777776654
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldF is believed to be a ABC transporter permease protein (along with ATP-binding subunit, GldA and a sunstrate-binding subunit, GldG) and is linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldF abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A | Back alignment and domain information |
|---|
Probab=97.94 E-value=2e-05 Score=69.75 Aligned_cols=48 Identities=33% Similarity=0.544 Sum_probs=36.9
Q ss_pred ccCCCHHHHH-HHHHHHHHh------h------CCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 004537 293 VRGVSGGERK-RVCIGNEII------I------NPSLLFLDEPTSGLDSTTALRIVQMLQD 340 (746)
Q Consensus 293 ~~~LSGGerq-Rv~IA~aL~------~------~p~illLDEPTsgLD~~~~~~i~~~L~~ 340 (746)
..++|||||| .+.++.+++ . .|++++||||+++||+.....+++.|++
T Consensus 30 ~~~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l~~ 90 (90)
T PF13558_consen 30 FGTLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLLRQ 90 (90)
T ss_dssp GGGS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHHHH
T ss_pred CCCCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHHhC
Confidence 4579999994 444444332 2 3799999999999999999999999874
|
|
| >PRK01889 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=97.93 E-value=1e-05 Score=89.51 Aligned_cols=78 Identities=23% Similarity=0.336 Sum_probs=59.0
Q ss_pred ceeceEEEEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCCh-hccCcEEEEecCCcCCCCCCHHHHH
Q 004537 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-SLKSKIGFVTQDDVLFPHLTVKETL 250 (746)
Q Consensus 172 iL~~vs~~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~-~~~~~i~yv~Q~~~l~~~lTV~E~l 250 (746)
-++.+.-.+++|++++|+|+||+|||||+|.|+|... +..|+|.+++..... ..++++.+++|+..++++ ....++
T Consensus 184 gl~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~--~~~G~i~~~~~~g~~tt~~~~l~~l~~~~~l~Dt-pG~~~~ 260 (356)
T PRK01889 184 GLDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEV--QKTGAVREDDSKGRHTTTHRELHPLPSGGLLIDT-PGMREL 260 (356)
T ss_pred cHHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcc--cceeeEEECCCCCcchhhhccEEEecCCCeecCC-Cchhhh
Confidence 3555555678999999999999999999999998543 458999998754322 235679999999888864 455555
Q ss_pred HH
Q 004537 251 TY 252 (746)
Q Consensus 251 ~~ 252 (746)
.+
T Consensus 261 ~l 262 (356)
T PRK01889 261 QL 262 (356)
T ss_pred cc
Confidence 44
|
|
| >TIGR00416 sms DNA repair protein RadA | Back alignment and domain information |
|---|
Probab=97.92 E-value=3.3e-05 Score=88.06 Aligned_cols=62 Identities=16% Similarity=0.181 Sum_probs=42.8
Q ss_pred hCCCEEEEeCCCCCC----C-----HHHHHHHHHHHHHHHH-CCCEEEEEecCCCh-------HHHhccCEEEEEeCCe
Q 004537 312 INPSLLFLDEPTSGL----D-----STTALRIVQMLQDIAE-AGKTVVTTIHQPSS-------RLFHKFDKLILLGKGS 373 (746)
Q Consensus 312 ~~p~illLDEPTsgL----D-----~~~~~~i~~~L~~l~~-~g~Tvi~~~H~~~~-------~i~~~~D~i~vL~~G~ 373 (746)
.+|+++++|.-++=. + .....+++..|.++++ .|.|++++.|...+ .+..++|.|+.|+.++
T Consensus 169 ~~~~~vVIDSIq~l~~~~~~~~~g~~~q~r~~~~~L~~~ak~~giTvllt~hvtkeg~~aG~~~le~lvD~VI~Le~~~ 247 (454)
T TIGR00416 169 ENPQACVIDSIQTLYSPDISSAPGSVSQVRECTAELMRLAKTRGIAIFIVGHVTKEGSIAGPKVLEHMVDTVLYFEGDR 247 (454)
T ss_pred cCCcEEEEecchhhcccccccCCCCHHHHHHHHHHHHHHHHHhCCEEEEEeccccCCccCCcccEeeeceEEEEEeccC
Confidence 479999999876521 1 2234556666777754 59999999996432 1456789999998654
|
The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)). |
| >PF12698 ABC2_membrane_3: ABC-2 family transporter protein; PDB: 2P0S_B 3CNI_A | Back alignment and domain information |
|---|
Probab=97.90 E-value=2.5e-06 Score=91.60 Aligned_cols=155 Identities=21% Similarity=0.385 Sum_probs=0.0
Q ss_pred hhHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 004537 568 ERAMLSKERAADMYRLSAYFLARTTSDLPLNLVLPVLFLVIVYFMAGLRMGAGPFFLSMLTVFLSIVAAQGLGLAIGAIL 647 (746)
Q Consensus 568 eR~v~~rEr~~g~Y~~~ay~la~~l~~lP~~~~~~~if~~ivY~m~gl~~~~~~Ff~f~l~~~l~~~~~~slg~~i~a~~ 647 (746)
|+.+..|-+..|. +...|++++++..+.+.++..+++..+++-..+++.. .++..++.+++..++..+++.+++.++
T Consensus 187 ~~~~~~~l~~~~~-~~~~~~~~~~l~~~~~~~i~~~i~~~i~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~is~~~ 263 (344)
T PF12698_consen 187 ESGTRERLLSSGV-SPWSYWLSKFLAYFLVSLIQSLIIIIIIFGISGIPFG--NFLLLLLLLLLFSLAFISFGFLISSFF 263 (344)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhhhHhhhcccC-CHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccCccc--chHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555556665 7889999999999999888887766642211124433 455555666777888899999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHhhcccC--CCccchhhhhccCHHHHHHHHHHHHHcCCCCCCCCCcccCchhhhHHHHHHH
Q 004537 648 MDLKKATTLASVTIMTFMLAGGYFVQ--EVPVFISWIRYMSFNFHTYKILLKIQYADISPIVNGMRTDSGFREVCALVAM 725 (746)
Q Consensus 648 ~~~~~A~~~~~~~~~~~~lf~Gf~i~--~ip~~~~Wl~yiS~~~yafeal~~nef~~~~~~~~g~~~~~~~~~~~iL~~~ 725 (746)
++...|..+++++.++.+.++|.+.+ .+|.+++|+.++.|.+|..+++...-+ |. ....+.++++|+++
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~P~~~~~~~~~~~~~--------~~-~~~~~~~~~~l~~~ 334 (344)
T PF12698_consen 264 KNSSTAISVASIIILLLSFLSGGFFPLSSLPSFLQWISSFLPFYWFIQGLRNIIY--------GD-WSEIWISLIILLLF 334 (344)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHhhHHHHHHHHHHHHH--------hc-HHHHHHHHHHHHHH
Confidence 99999888777776644444444443 789999999999999998887654432 21 11233566777777
Q ss_pred HHHHHHHHH
Q 004537 726 VFGYRLLAY 734 (746)
Q Consensus 726 ~~~f~~l~~ 734 (746)
.+++.+++.
T Consensus 335 ~~v~~~l~~ 343 (344)
T PF12698_consen 335 AVVYLLLAI 343 (344)
T ss_dssp ---------
T ss_pred HHHHHHHHh
Confidence 777766654
|
|
| >PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed | Back alignment and domain information |
|---|
Probab=97.89 E-value=1.4e-05 Score=83.05 Aligned_cols=71 Identities=17% Similarity=0.298 Sum_probs=47.2
Q ss_pred eCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccE----EEECCEeCChhccCcEEEEecCCcCCCCCCHHHHHHHHH
Q 004537 181 NPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGS----ITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAA 254 (746)
Q Consensus 181 ~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~----I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~ 254 (746)
.+..+++|.||||||||||.+.|++.+. ..+|. |.+|+.......++..+++++.+. +...++.+.+.+..
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~--~~~g~~~v~i~~D~~~~~~~~~~~~g~~~~~~~-~~~~d~~~~~~~l~ 105 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQ--QDGELPAIQVPMDGFHLDNAVLDAHGLRPRKGA-PETFDVAGLAALLR 105 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhh--hccCCceEEEecccccCCHHHHHhcccccccCC-CCCCCHHHHHHHHH
Confidence 4568999999999999999999998664 34676 555654433333444577665433 34556666555443
|
|
| >PF09818 ABC_ATPase: Predicted ATPase of the ABC class; InterPro: IPR019195 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00035 Score=77.68 Aligned_cols=160 Identities=20% Similarity=0.278 Sum_probs=98.7
Q ss_pred EEeCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEecCCcCCCCCCHHHHHHHHHhccC
Q 004537 179 SVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRL 258 (746)
Q Consensus 179 ~i~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~ 258 (746)
-|++| ++.|+|.+=-||||||++|.--.++. .-| ||...-- .......+--+|- ..|
T Consensus 241 GIp~G-vTlIvGGGyHGKSTLL~Ale~GVYnH-ipG----DGRE~VV-T~~~avkirAEDG----R~V------------ 297 (448)
T PF09818_consen 241 GIPKG-VTLIVGGGYHGKSTLLEALERGVYNH-IPG----DGREFVV-TDPDAVKIRAEDG----RSV------------ 297 (448)
T ss_pred eeCCc-EEEEECCCCccHHHHHHHHHhcccCC-CCC----CCceEEE-ECCCceEEEecCC----ceE------------
Confidence 48889 99999999999999999997434321 122 2322100 0000001111110 000
Q ss_pred CCCCcHHHHHHHHHHHHHHcCCCccccccccCccccCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC-----CHHHHHH
Q 004537 259 PNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGL-----DSTTALR 333 (746)
Q Consensus 259 ~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~p~illLDEPTsgL-----D~~~~~~ 333 (746)
. ...+.-++.. |+...||.- -....=||-.-|=.+|..||=..+++||+||=||+- |...+..
T Consensus 298 ----~----~vDISpFI~~--LP~g~dT~~--FsT~~ASGSTSqAAnI~EAlE~Ga~~LLiDEDtsATNfmiRD~rMq~L 365 (448)
T PF09818_consen 298 ----E----GVDISPFINN--LPGGKDTTC--FSTENASGSTSQAANIMEALEAGARLLLIDEDTSATNFMIRDERMQAL 365 (448)
T ss_pred ----e----CccchHHHhh--CCCCCCCCc--ccccCCCchHHHHHHHHHHHHcCCCEEEEcCcccchheeehhHHHHHh
Confidence 0 0001122332 355555431 112457999999999999999999999999999974 4444444
Q ss_pred H----------HHHHHHHH-HCCCEEEEEecCCChHHHhccCEEEEEeCCeE
Q 004537 334 I----------VQMLQDIA-EAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (746)
Q Consensus 334 i----------~~~L~~l~-~~g~Tvi~~~H~~~~~i~~~~D~i~vL~~G~i 374 (746)
+ ++.+++|. +.|.+.|+++-- +.+.+..+|+|++|++=+.
T Consensus 366 v~k~kEPITPfidrvr~l~~~~GvStIlV~Gg-sgdy~~vAD~Vi~Md~Y~~ 416 (448)
T PF09818_consen 366 VSKEKEPITPFIDRVRSLYEKLGVSTILVVGG-SGDYFDVADRVIMMDEYRP 416 (448)
T ss_pred hccCCCCcchHHHHHHHHHHHcCceEEEEecc-chhhHhhCCEEEEecCccc
Confidence 4 55566664 358888887765 5578899999999998554
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry consists of various predicted ABC transporter class ATPases. |
| >cd01876 YihA_EngB The YihA (EngB) subfamily | Back alignment and domain information |
|---|
Probab=97.87 E-value=1.8e-05 Score=75.92 Aligned_cols=45 Identities=11% Similarity=0.127 Sum_probs=33.7
Q ss_pred ccCCCHHHHHHHHHHHHH-----hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 004537 293 VRGVSGGERKRVCIGNEI-----IINPSLLFLDEPTSGLDSTTALRIVQMLQDI 341 (746)
Q Consensus 293 ~~~LSGGerqRv~IA~aL-----~~~p~illLDEPTsgLD~~~~~~i~~~L~~l 341 (746)
...++++++++....... ...|+++ |+|++|.....++++.|.++
T Consensus 120 ~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 120 ADKLKKSELAKALKEIKKELKLFEIDPPII----LFSSLKGQGIDELRALIEKW 169 (170)
T ss_pred hhcCChHHHHHHHHHHHHHHHhccCCCceE----EEecCCCCCHHHHHHHHHHh
Confidence 345789988887666553 2345655 99999999999999988764
|
This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target. |
| >PRK03846 adenylylsulfate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.84 E-value=1e-05 Score=81.99 Aligned_cols=56 Identities=32% Similarity=0.393 Sum_probs=42.1
Q ss_pred eCCeEEEEECCCCccHHHHHHHHHcCCCCCCCccEEEECCEeCChhccCcEEEEecC
Q 004537 181 NPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQD 237 (746)
Q Consensus 181 ~~Ge~~aIvGpsGsGKSTLL~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~ 237 (746)
++|++++|+|+||||||||.+.|++++.. .-.|.+.++|.++.+.+...++|.+|+
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~-~~~~~~~ld~d~~~~~~~~~~~~~~~~ 77 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHE-LGVSTYLLDGDNVRHGLCSDLGFSDAD 77 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHh-CCCCEEEEcCEeHHhhhhhcCCcCccc
Confidence 57899999999999999999999986642 224789999987654433345555554
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 746 | ||||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 9e-21 | ||
| 3tif_A | 235 | Dimeric Structure Of A Post-Hydrolysis State Of The | 1e-20 | ||
| 1f3o_A | 235 | Crystal Structure Of Mj0796 Atp-Binding Cassette Le | 7e-20 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 4e-19 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 5e-19 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 9e-19 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 2e-18 | ||
| 2ixf_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 2e-18 | ||
| 2pcj_A | 224 | Crystal Structure Of Abc Transporter (Aq_297) From | 4e-18 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 5e-18 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 7e-18 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 7e-18 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 8e-18 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 8e-18 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 1e-17 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 1e-17 | ||
| 3d31_A | 348 | Modbc From Methanosarcina Acetivorans Length = 348 | 2e-17 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 2e-17 | ||
| 1oxs_C | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 3e-17 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 3e-17 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 3e-17 | ||
| 2ixe_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 4e-17 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 4e-17 | ||
| 1v43_A | 372 | Crystal Structure Of Atpase Subunit Of Abc Sugar Tr | 6e-17 | ||
| 1vci_A | 373 | Crystal Structure Of The Atp-binding Cassette Of Mu | 7e-17 | ||
| 1q1b_A | 381 | Crystal Structure Of E. Coli Malk In The Nucleotide | 7e-17 | ||
| 1q12_A | 381 | Crystal Structure Of The Atp-bound E. Coli Malk Len | 7e-17 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 7e-17 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 8e-17 | ||
| 1oxx_K | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 1e-16 | ||
| 1g29_1 | 372 | Malk Length = 372 | 2e-16 | ||
| 2r6g_A | 381 | The Crystal Structure Of The E. Coli Maltose Transp | 2e-16 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 2e-16 | ||
| 2d62_A | 375 | Crystal Structure Of Multiple Sugar Binding Transpo | 5e-16 | ||
| 3fvq_A | 359 | Crystal Structure Of The Nucleotide Binding Domain | 5e-16 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 5e-16 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 5e-16 | ||
| 2ixg_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 8e-16 | ||
| 2yz2_A | 266 | Crystal Structure Of The Abc Transporter In The Cob | 1e-15 | ||
| 4hlu_A | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 2e-15 | ||
| 3nh6_A | 306 | Nucleotide Binding Domain Of Human Abcb6 (Apo Struc | 3e-15 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 3e-15 | ||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 4e-15 | ||
| 3qf4_B | 598 | Crystal Structure Of A Heterodimeric Abc Transporte | 6e-15 | ||
| 3gfo_A | 275 | Structure Of Cbio1 From Clostridium Perfringens: Pa | 7e-15 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 1e-14 | ||
| 1vpl_A | 256 | Crystal Structure Of Abc Transporter Atp-binding Pr | 6e-14 | ||
| 3b5y_A | 582 | Crystal Structure Of Msba From Salmonella Typhimuri | 3e-13 | ||
| 1b0u_A | 262 | Atp-Binding Subunit Of The Histidine Permease From | 5e-13 | ||
| 3dhw_C | 343 | Crystal Structure Of Methionine Importer Metni Leng | 6e-13 | ||
| 3tui_C | 366 | Inward Facing Conformations Of The Metni Methionine | 1e-12 | ||
| 3tuj_C | 366 | Inward Facing Conformations Of The Metni Methionine | 2e-12 | ||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 2e-12 | ||
| 1ji0_A | 240 | Crystal Structure Analysis Of The Abc Transporter F | 1e-11 | ||
| 2onk_A | 240 | Abc Transporter Modbc In Complex With Its Binding P | 2e-11 | ||
| 4dbl_C | 249 | Crystal Structure Of E159q Mutant Of Btucdf Length | 3e-11 | ||
| 2nq2_C | 253 | An Inward-Facing Conformation Of A Putative Metal-C | 3e-11 | ||
| 2d3w_A | 248 | Crystal Structure Of Escherichia Coli Sufc, An Atpa | 3e-11 | ||
| 4fi3_C | 249 | Structure Of Vitamin B12 Transporter Btucd-F In A N | 4e-11 | ||
| 2zu0_C | 267 | Crystal Structure Of Sufc-Sufd Complex Involved In | 4e-11 | ||
| 2qi9_C | 249 | Abc-Transporter Btucd In Complex With Its Periplasm | 4e-11 | ||
| 1l7v_C | 249 | Bacterial Abc Transporter Involved In B12 Uptake Le | 5e-11 | ||
| 4hlu_D | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 2e-10 | ||
| 2pzg_A | 241 | Minimal Human Cftr First Nucleotide Binding Domain | 6e-10 | ||
| 1g6h_A | 257 | Crystal Structure Of The Adp Conformation Of Mj1267 | 1e-09 | ||
| 4g1u_C | 266 | X-Ray Structure Of The Bacterial Heme Transporter H | 1e-09 | ||
| 2pze_A | 229 | Minimal Human Cftr First Nucleotide Binding Domain | 2e-09 | ||
| 2bbs_A | 290 | Human Deltaf508 Nbd1 With Three Solubilizing Mutati | 2e-09 | ||
| 2bbt_A | 290 | Human Deltaf508 Nbd1 With Two Solublizing Mutations | 2e-09 | ||
| 2pzf_A | 228 | Minimal Human Cftr First Nucleotide Binding Domain | 4e-09 | ||
| 1sgw_A | 214 | Putative Abc Transporter (Atp-Binding Protein) From | 4e-09 | ||
| 1r0z_A | 286 | Phosphorylated Cystic Fibrosis Transmembrane Conduc | 6e-09 | ||
| 1gaj_A | 257 | Crystal Structure Of A Nucleotide-Free Atp-Binding | 6e-09 | ||
| 1q3h_A | 286 | Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | 6e-09 | ||
| 1yqt_A | 538 | Rnase-L Inhibitor Length = 538 | 1e-08 | ||
| 3si7_A | 285 | The Crystal Structure Of The Nbd1 Domain Of The Mou | 1e-08 | ||
| 1xmi_A | 291 | Crystal Structure Of Human F508a Nbd1 Domain With A | 2e-08 | ||
| 1g9x_A | 257 | Characterization Of The Twinning Structure Of Mj126 | 2e-08 | ||
| 1xfa_A | 283 | Structure Of Nbd1 From Murine Cftr- F508r Mutant Le | 3e-08 | ||
| 1xf9_A | 283 | Structure Of Nbd1 From Murine Cftr- F508s Mutant Le | 3e-08 | ||
| 2d2e_A | 250 | Crystal Structure Of Atypical Cytoplasmic Abc-Atpas | 6e-08 | ||
| 2ihy_A | 279 | Structure Of The Staphylococcus Aureus Putative Atp | 1e-07 | ||
| 2bbo_A | 291 | Human Nbd1 With Phe508 Length = 291 | 4e-07 | ||
| 1xmj_A | 290 | Crystal Structure Of Human Deltaf508 Human Nbd1 Dom | 9e-07 | ||
| 3bk7_A | 607 | Structure Of The Complete Abce1RNAASE-L Inhibitor P | 2e-06 | ||
| 3j15_B | 593 | Model Of Ribosome-Bound Archaeal Pelota And Abce1 L | 3e-06 | ||
| 3j16_B | 608 | Models Of Ribosome-Bound Dom34p And Rli1p And Their | 3e-06 | ||
| 4fwi_B | 334 | Crystal Structure Of The Nucleotide-binding Domain | 5e-06 | ||
| 2cbz_A | 237 | Structure Of The Human Multidrug Resistance Protein | 2e-05 | ||
| 3gd7_A | 390 | Crystal Structure Of Human Nbd2 Complexed With N6- | 2e-04 | ||
| 3pih_A | 916 | T. Maritima Uvra In Complex With Fluorescein-Modifi | 2e-04 | ||
| 3ozx_A | 538 | Crystal Structure Of Abce1 Of Sulfolubus Solfataric | 7e-04 |
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235 | Back alignment and structure |
|
| >pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372 | Back alignment and structure |
|
| >pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373 | Back alignment and structure |
|
| >pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381 | Back alignment and structure |
|
| >pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375 | Back alignment and structure |
|
| >pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc Complexed With Atp Length = 359 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266 | Back alignment and structure |
|
| >pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598 | Back alignment and structure |
|
| >pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein (tm0544) From Thermotoga Maritima At 2.10 A Resolution Length = 256 | Back alignment and structure |
|
| >pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582 | Back alignment and structure |
|
| >pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From Salmonella Typhimurium Length = 262 | Back alignment and structure |
|
| >pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343 | Back alignment and structure |
|
| >pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From Thermotoga Maritima Length = 240 | Back alignment and structure |
|
| >pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240 | Back alignment and structure |
|
| >pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf Length = 249 | Back alignment and structure |
|
| >pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate Type Abc Transporter. Length = 253 | Back alignment and structure |
|
| >pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase Compenent Of The Suf Iron-Sulfur Cluster Assembly Machinery Length = 248 | Back alignment and structure |
|
| >pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A Nucleotide-Bound State Length = 249 | Back alignment and structure |
|
| >pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron- Sulfur Cluster Biosynthesis Length = 267 | Back alignment and structure |
|
| >pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic Binding Protein Btuf Length = 249 | Back alignment and structure |
|
| >pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake Length = 249 | Back alignment and structure |
|
| >pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Monomer Length = 241 | Back alignment and structure |
|
| >pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp- Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From Yersinia Pestis Length = 266 | Back alignment and structure |
|
| >pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer Length = 229 | Back alignment and structure |
|
| >pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations Length = 290 | Back alignment and structure |
|
| >pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations. Length = 290 | Back alignment and structure |
|
| >pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer With Delta F508 Length = 228 | Back alignment and structure |
|
| >pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From Pyrococcus Furiosus Pfu-867808-001 Length = 214 | Back alignment and structure |
|
| >pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1) With Atp Length = 286 | Back alignment and structure |
|
| >pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette From An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | Back alignment and structure |
|
| >pdb|1YQT|A Chain A, Rnase-L Inhibitor Length = 538 | Back alignment and structure |
|
| >pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr Protein, Deltaf508 Mutant Length = 285 | Back alignment and structure |
|
| >pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp Length = 291 | Back alignment and structure |
|
| >pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An Atp-Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant Length = 283 | Back alignment and structure |
|
| >pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant Length = 283 | Back alignment and structure |
|
| >pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc From Thermus Thermophilus Hb8 Length = 250 | Back alignment and structure |
|
| >pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase Subunit Of An Atp-Binding Cassette (Abc) Transporter Length = 279 | Back alignment and structure |
|
| >pdb|2BBO|A Chain A, Human Nbd1 With Phe508 Length = 291 | Back alignment and structure |
|
| >pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain With Atp Length = 290 | Back alignment and structure |
|
| >pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein From Pyrococcus Abysii Length = 607 | Back alignment and structure |
|
| >pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1 Length = 593 | Back alignment and structure |
|
| >pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their Ribosomal Binding Partners Length = 608 | Back alignment and structure |
|
| >pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A Dipeptide Abc Transporter Length = 334 | Back alignment and structure |
|
| >pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1 Nucleotide Binding Domain 1 Length = 237 | Back alignment and structure |
|
| >pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6- Phenylethyl-Atp (P-Atp) Length = 390 | Back alignment and structure |
|
| >pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna Length = 916 | Back alignment and structure |
|
| >pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus (-Fes Domain) Length = 538 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 746 | |||
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 1e-37 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 1e-37 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 4e-35 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 2e-31 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 2e-31 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 1e-30 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 2e-30 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 5e-27 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 2e-30 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 3e-30 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 8e-30 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 1e-29 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 3e-24 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 1e-29 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 2e-29 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 8e-27 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 3e-29 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 3e-29 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 6e-29 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 2e-28 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 4e-26 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 2e-27 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 2e-27 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 4e-27 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 2e-25 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 3e-24 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 2e-25 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 6e-25 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 9e-25 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 3e-24 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 4e-24 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 2e-23 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 5e-23 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 1e-22 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 1e-22 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 1e-22 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 1e-20 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 5e-20 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 1e-19 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 1e-19 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 1e-19 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 2e-19 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 4e-18 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 7e-17 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 4e-16 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 5e-16 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 3e-06 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 3e-06 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 1e-15 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 1e-15 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 6e-15 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 1e-13 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 2e-13 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 3e-12 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 7e-12 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 9e-12 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 2e-09 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 2e-08 |
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 138 bits (351), Expect = 1e-37
Identities = 44/185 (23%), Positives = 92/185 (49%), Gaps = 15/185 (8%)
Query: 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKS 229
K +L IT ++ G V+ GP+G GKTTLL +S ++P G I YN P +K +K
Sbjct: 22 KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTIST-YLKPL-KGEIIYNGVPITK-VKG 78
Query: 230 KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIG 289
KI F+ ++ ++ ++V++ L A L + + +D + + + +
Sbjct: 79 KIFFLPEEIIVPRKISVEDYLKAVASLY-----GVKVNKNEIMDALESVEVLDLKKK--- 130
Query: 290 GSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA-EAGKTV 348
+ +S G +RV + + +++N + LD+P +D + ++++ + +I E G +
Sbjct: 131 ---LGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVI 187
Query: 349 VTTIH 353
+++
Sbjct: 188 ISSRE 192
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 139 bits (354), Expect = 1e-37
Identities = 47/185 (25%), Positives = 87/185 (47%), Gaps = 15/185 (8%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---SLKS 229
L GI+ + GE+ L+GP+G+GKTT L ++S L++P+ G +T + ++
Sbjct: 31 LKGISFEIEEGEIFGLIGPNGAGKTTTLRIIST-LIKPS-SGIVTVFGKNVVEEPHEVRK 88
Query: 230 KIGFVTQDDVLFPHLTVKETLTY-AALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMI 288
I ++ ++ + ++ E L + A + E+ GL
Sbjct: 89 LISYLPEEAGAYRNMQGIEYLRFVAGFYASS----SSEIEEMVERATEIAGLGEKIK--- 141
Query: 289 GGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTV 348
V S G +++ I +++NP L LDEPTSGLD A + ++L+ ++ G T+
Sbjct: 142 --DRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTI 199
Query: 349 VTTIH 353
+ + H
Sbjct: 200 LVSSH 204
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 133 bits (337), Expect = 4e-35
Identities = 53/231 (22%), Positives = 99/231 (42%), Gaps = 23/231 (9%)
Query: 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS- 226
+ K IL I+ + G+ L G +G+GKTTLLN+L+ P G++ K
Sbjct: 32 QGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYE--PATSGTVNLFGKMPGKVG 89
Query: 227 -----LKSKIGFVTQD--DVLFPHLTVKETLTYAAL--LRLPNTLTKQQKEKRAIDVINE 277
++ IGFV+ + V + + A + + + + + A ++
Sbjct: 90 YSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRN-EAHQLLKL 148
Query: 278 LGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQM 337
+G+ I +S GE++RV I ++ P +L LDEP +GLD ++ +
Sbjct: 149 VGMSAKAQQYI-----GYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSI 203
Query: 338 LQDIAEAGKT---VVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385
L ++++ T + T H + F K++LL G + G + +
Sbjct: 204 LDSLSDSYPTLAMIYVT-HFIEE-ITANFSKILLLKDGQSIQQGAVEDILT 252
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 121 bits (306), Expect = 2e-31
Identities = 66/216 (30%), Positives = 98/216 (45%), Gaps = 33/216 (15%)
Query: 171 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKS- 229
+IL GI+ SV GE ++++G SGSGK+TLL +L G L PT G +
Sbjct: 18 EILKGISLSVKKGEFVSIIGASGSGKSTLLYIL-GLLDAPT-EGKVFLEGKEVDY-TNEK 74
Query: 230 --------KIGFVTQDDVLFPHLTVKET----LTYAALLRLPNTLTKQQKEKRAIDVINE 277
K+GFV Q L P LT E + K++ ++R +++E
Sbjct: 75 ELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGK-------PKKEAKERGEYLLSE 127
Query: 278 LGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQM 337
LGL D + +SGGE++RV I + P LLF DEPT LDS R++ +
Sbjct: 128 LGLG---DKL--SRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDI 182
Query: 338 LQDIAEAGKTVVTTIHQP-----SSRLFHKFDKLIL 368
I E G ++V H+ + R D ++
Sbjct: 183 FLKINEGGTSIVMVTHERELAELTHRTLEMKDGKVV 218
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 121 bits (307), Expect = 2e-31
Identities = 74/233 (31%), Positives = 112/233 (48%), Gaps = 34/233 (14%)
Query: 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS--- 224
+ + IL I+ P ++A GPSG GK+T+ +LL R +PT G IT + P
Sbjct: 13 DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLE-RFYQPT-AGEITIDGQPIDNIS 70
Query: 225 -KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQ-----KEKRAIDVINEL 278
++ +S+IGFV+QD + T++E LTY L T + A + +
Sbjct: 71 LENWRSQIGFVSQDSAIM-AGTIRENLTYG----LEGDYTDEDLWQVLDLAFARSFVENM 125
Query: 279 --GLERCQDTMIGGSFVRGV--SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRI 334
L +T +G RGV SGG+R+R+ I + NP +L LDE T+ LDS + +
Sbjct: 126 PDQL----NTEVGE---RGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESE-SM 177
Query: 335 VQMLQDIAEAGKTVVTTIHQPSSRL--FHKFDKLILLGKGSLLYFGKASEAMA 385
VQ D G+T + H RL DK+ + KG + GK +E +A
Sbjct: 178 VQKALDSLMKGRTTLVIAH----RLSTIVDADKIYFIEKGQITGSGKHNELVA 226
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 120 bits (303), Expect = 1e-30
Identities = 59/220 (26%), Positives = 95/220 (43%), Gaps = 24/220 (10%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228
E + + +N G++LA++G +G GK+TLL+LL G + P G I +
Sbjct: 17 ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLG-IHRPI-QGKIE---------VY 65
Query: 229 SKIGFVTQD-DVLFPHLTVKETLTY--AALLRLPNTLTKQQKEKRAIDVINELGLERCQD 285
IGFV Q F +V + + + + + A+ ++ L L
Sbjct: 66 QSIGFVPQFFSSPFA-YSVLDIVLMGRSTHINTFAKPKSHDYQV-AMQALDYLNLTHLAK 123
Query: 286 TMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA-EA 344
+SGG+R+ + I I L+ LDEPTS LD ++ +L D+A
Sbjct: 124 REFT-----SLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQ 178
Query: 345 GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384
TVV T HQP+ + +K +LL K FG+ +
Sbjct: 179 NMTVVFTTHQPNQ-VVAIANKTLLLNKQ-NFKFGETRNIL 216
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 126 bits (318), Expect = 2e-30
Identities = 57/246 (23%), Positives = 96/246 (39%), Gaps = 31/246 (12%)
Query: 108 FTMPPDEIADSKPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFTDVTYKVILKGMTSS 167
T+P F D IP + E +F+ L+ + + +
Sbjct: 304 VTLPASVREGINIFLDGHIPAENLRFRTEALQFRIADATED-LQNDSASRAFSYPSLKKT 362
Query: 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227
+ +LN G + E+L +MG +G+GKTTL+ LL+G ++P G + S+
Sbjct: 363 QGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAG-ALKPD-EGQDIPK---LNVSM 417
Query: 228 KS-KIGFVTQDDV--LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ 284
K KI V LF + L + DV+ L ++
Sbjct: 418 KPQKIAPKFPGTVRQLFFKKIRGQFLN----------------PQFQTDVVKPLRIDDII 461
Query: 285 DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQD-IAE 343
D V+ +SGGE +RV I + I + +DEP++ LDS + ++++ I
Sbjct: 462 D-----QEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILH 516
Query: 344 AGKTVV 349
KT
Sbjct: 517 NKKTAF 522
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 115 bits (291), Expect = 5e-27
Identities = 50/218 (22%), Positives = 83/218 (38%), Gaps = 31/218 (14%)
Query: 146 LPIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSG 205
LP L+ VT++ +S + L + PG+VL L+G +G GK+T L +L+G
Sbjct: 75 LPTNLE-AHVTHRY----SANSFKLHRLP----TPRPGQVLGLVGTNGIGKSTALKILAG 125
Query: 206 RL--------MEPTVGGSITYND----HPYSKSLKSK-IGFVTQDD-VLFPHLTVKETLT 251
+ P I Y Y + I + + V +K +
Sbjct: 126 KQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQ 185
Query: 252 YAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEII 311
L L ++ + I L LE + + +SGGE +R IG +
Sbjct: 186 KVGELL---KLRMEKSPEDVKRYIKILQLEN-----VLKRDIEKLSGGELQRFAIGMSCV 237
Query: 312 INPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVV 349
+ DEP+S LD L Q+++ + K V+
Sbjct: 238 QEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVI 275
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 119 bits (300), Expect = 2e-30
Identities = 67/234 (28%), Positives = 116/234 (49%), Gaps = 35/234 (14%)
Query: 167 SEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS-- 224
+ IL+ I S+ GEV+ ++G SGSGK+TL L+ R P G + + H +
Sbjct: 19 PDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQ-RFYIPE-NGQVLIDGHDLALA 76
Query: 225 --KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQ-----KEKRAIDVINE 277
L+ ++G V QD+VL + ++ + ++ A P ++ ++ K A D I+E
Sbjct: 77 DPNWLRRQVGVVLQDNVLL-NRSIIDNISLAN----PG-MSVEKVIYAAKLAGAHDFISE 130
Query: 278 L--GLERCQDTMIGGSFVRGV--SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALR 333
L G +T++G +G SGG+R+R+ I ++ NP +L DE TS LD +
Sbjct: 131 LREGY----NTIVGE---QGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESE-H 182
Query: 334 IVQMLQDIAEAGKTVVTTIHQPSSRL--FHKFDKLILLGKGSLLYFGKASEAMA 385
++ G+TV+ H RL D++I++ KG ++ GK E ++
Sbjct: 183 VIMRNMHKICKGRTVIIIAH----RLSTVKNADRIIVMEKGKIVEQGKHKELLS 232
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 125 bits (316), Expect = 3e-30
Identities = 66/227 (29%), Positives = 111/227 (48%), Gaps = 44/227 (19%)
Query: 125 DIPEDIEAGTRERPKFQTEPTLPIYLKFTDVT--YKVILKGMTSSEEKDILNGITGSVNP 182
D ++ + G R + + L+F +VT Y E L I +
Sbjct: 323 DSEQEKDEGKRVIDRATGD------LEFRNVTFTYP--------GREVPALRNINLKIPA 368
Query: 183 GEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP---YS-KSLKSKIGFVTQDD 238
G+ +AL+G SGSGK+T+ +L++ R + G I + H Y+ SL++++ V+Q+
Sbjct: 369 GKTVALVGRSGSGKSTIASLIT-RFYDID-EGHILMDGHDLREYTLASLRNQVALVSQNV 426
Query: 239 VLFPHLTVKETLTYAALLRLPNTLTKQQ-----KEKRAIDVINEL--GLERCQDTMIGGS 291
LF + TV + YA +++Q + A+D IN++ GL DT+IG
Sbjct: 427 HLF-NDTVANNIAYAR----TEEYSREQIEEAARMAYAMDFINKMDNGL----DTIIGE- 476
Query: 292 FVRGV--SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQ 336
GV SGG+R+R+ I ++ + +L LDE TS LD+ + R +Q
Sbjct: 477 --NGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESE-RAIQ 520
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 124 bits (313), Expect = 8e-30
Identities = 67/227 (29%), Positives = 110/227 (48%), Gaps = 44/227 (19%)
Query: 125 DIPEDIEAGTRERPKFQTEPTLPIYLKFTDVT--YKVILKGMTSSEEKDILNGITGSVNP 182
D+ + + G E + E + DVT Y+ +EK L+ ++ S+
Sbjct: 323 DLETERDNGKYEAERVNGE------VDVKDVTFTYQ--------GKEKPALSHVSFSIPQ 368
Query: 183 GEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP---YS-KSLKSKIGFVTQDD 238
G+ +AL+G SGSGK+T+ NL + R + GSI + H Y +L+ V+Q+
Sbjct: 369 GKTVALVGRSGSGKSTIANLFT-RFYDVD-SGSICLDGHDVRDYKLTNLRRHFALVSQNV 426
Query: 239 VLFPHLTVKETLTYAALLRLPNTLTKQQ-----KEKRAIDVINEL--GLERCQDTMIGGS 291
LF + T+ + YAA T++Q ++ A++ I + GL DT+IG
Sbjct: 427 HLF-NDTIANNIAYAAEG----EYTREQIEQAARQAHAMEFIENMPQGL----DTVIGE- 476
Query: 292 FVRGV--SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQ 336
G SGG+R+RV I ++ + +L LDE TS LD+ + R +Q
Sbjct: 477 --NGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESE-RAIQ 520
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 122 bits (309), Expect = 1e-29
Identities = 55/243 (22%), Positives = 94/243 (38%), Gaps = 28/243 (11%)
Query: 108 FTMPPDEIADSKPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFTDVTYKVILKGMTSS 167
F+ P F + ++ KF + T VTY +
Sbjct: 241 FSQPKGTRNGINEFLRGYLKDENVRFRPYEIKFTKTGERVEIERETLVTYP----RLVKD 296
Query: 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227
L G + GEV+ ++GP+G GKTT + +L+G + EPT G I ++
Sbjct: 297 YGSFRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAG-VEEPT-EGKIEWD-------- 346
Query: 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTM 287
+ + Q TV E L+ +K +++ LG+ D
Sbjct: 347 -LTVAYKPQYIKADYEGTVYELLSKIDA-------SKLNSNFYKTELLKPLGIIDLYD-- 396
Query: 288 IGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGK 346
V +SGGE +RV I ++ + + LDEP++ LD L + + ++ + E K
Sbjct: 397 ---REVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEK 453
Query: 347 TVV 349
T +
Sbjct: 454 TAL 456
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 3e-24
Identities = 47/184 (25%), Positives = 84/184 (45%), Gaps = 27/184 (14%)
Query: 179 SVNPGEVLALMGPSGSGKTTLLNLLSGRLM------EPTVGGSITYND----HPYSKSLK 228
V G V+ ++GP+G+GK+T + +L+G+L+ + G I Y + LK
Sbjct: 43 VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLK 102
Query: 229 -SKIGFVTQDDV--LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQD 285
+I V + L P + + L K + + +V+ L LE +
Sbjct: 103 NGEIRPVVKPQYVDLIPKAVKGKVIE---------LLKKADETGKLEEVVKALELENVLE 153
Query: 286 TMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAG 345
++ +SGGE +RV I ++ N + F DEP+S LD L + ++ ++E G
Sbjct: 154 -----REIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEG 208
Query: 346 KTVV 349
K+V+
Sbjct: 209 KSVL 212
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 116 bits (293), Expect = 1e-29
Identities = 63/200 (31%), Positives = 103/200 (51%), Gaps = 19/200 (9%)
Query: 167 SEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS 226
E L + ++ GE +++MGPSGSGK+T+LN++ G L +PT G + ++ +
Sbjct: 15 EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNII-GCLDKPT-EGEVYIDNIKTND- 71
Query: 227 LKS---------KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINE 277
L KIGFV Q L P LT E + + + ++ +++ KRA++ +
Sbjct: 72 LDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKM 131
Query: 278 LGL-ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQ 336
L ER + +SGG+++RV I + NP ++ D+PT LDS T +I+Q
Sbjct: 132 AELEERFANHKPN-----QLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQ 186
Query: 337 MLQDI-AEAGKTVVTTIHQP 355
+L+ + E GKTVV H
Sbjct: 187 LLKKLNEEDGKTVVVVTHDI 206
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 122 bits (309), Expect = 2e-29
Identities = 52/243 (21%), Positives = 93/243 (38%), Gaps = 28/243 (11%)
Query: 108 FTMPPDEIADSKPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFTDVTYKVILKGMTSS 167
F+ P F + ++ R RP L + V +
Sbjct: 311 FSKPKGTRNGINEFLQGYLKDE---NVRFRPYEIRFTKLS-ERVDVERETLVEYPRLVKD 366
Query: 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227
L G + GEV+ ++GP+G GKTT + +L+G + EPT G + ++
Sbjct: 367 YGSFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAG-VEEPT-EGKVEWDL------- 417
Query: 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTM 287
+ + Q TV E L+ +L + +++ LG+ D
Sbjct: 418 --TVAYKPQYIKAEYEGTVYELLSKIDSSKLNS-------NFYKTELLKPLGIIDLYDRN 468
Query: 288 IGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGK 346
+ SGGE +RV I ++ + + LDEP++ LD L + + ++ + E K
Sbjct: 469 VE-DL----SGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEK 523
Query: 347 TVV 349
T +
Sbjct: 524 TAL 526
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 115 bits (289), Expect = 8e-27
Identities = 43/192 (22%), Positives = 81/192 (42%), Gaps = 23/192 (11%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLM----EPTVGGSITYNDHPYS 224
+ V G V+ ++GP+G+GKTT + +L+G+L+ E +
Sbjct: 103 VNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGN 162
Query: 225 -------KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINE 277
+ +I V + ++ + + L L K + + +V+ E
Sbjct: 163 ELQNYFERLKNGEIRPVVKP----QYVDLLPKAVKGKVREL---LKKVDEVGKFEEVVKE 215
Query: 278 LGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQM 337
L LE + + +SGGE +RV I ++ F DEP+S LD L++ ++
Sbjct: 216 LELEN-----VLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARV 270
Query: 338 LQDIAEAGKTVV 349
++ +A GK V+
Sbjct: 271 IRRLANEGKAVL 282
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 116 bits (293), Expect = 3e-29
Identities = 68/246 (27%), Positives = 112/246 (45%), Gaps = 31/246 (12%)
Query: 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME 209
++F+DV + L I + G AL+G +GSGK+T+ LL R +
Sbjct: 18 IEFSDVNF-----SYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLY-RFYD 71
Query: 210 PTVGGSITYNDHPYS----KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQ 265
G I + S++S IG V QD +LF + T+K + Y L + K
Sbjct: 72 AE--GDIKIGGKNVNKYNRNSIRSIIGIVPQDTILF-NETIKYNILYGKLDATDEEVIKA 128
Query: 266 QKEKRAIDVINEL--GLERCQDTMIGGSFVRGV--SGGERKRVCIGNEIIINPSLLFLDE 321
K + D I L DT++G +G+ SGGER+R+ I ++ +P ++ DE
Sbjct: 129 TKSAQLYDFIEALPKKW----DTIVGN---KGMKLSGGERQRIAIARCLLKDPKIVIFDE 181
Query: 322 PTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRL--FHKFDKLILLGKGSLLYFGK 379
TS LDS T + ++D+ + +T++ H RL + +ILL KG ++ G
Sbjct: 182 ATSSLDSKTEYLFQKAVEDLRK-NRTLIIIAH----RLSTISSAESIILLNKGKIVEKGT 236
Query: 380 ASEAMA 385
+ +
Sbjct: 237 HKDLLK 242
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 116 bits (292), Expect = 3e-29
Identities = 56/227 (24%), Positives = 93/227 (40%), Gaps = 28/227 (12%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---- 224
E L ++G V GE+L L+GP+G+GK+TLL ++G M GSI + P
Sbjct: 12 ESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG--MTSG-KGSIQFAGQPLEAWSA 68
Query: 225 KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ 284
L +++Q V Y L + K +++N++
Sbjct: 69 TKLALHRAYLSQQQTPPFATPVWH---YLTLHQHD---------KTRTELLNDV-AGALA 115
Query: 285 DTMIGGSFVRGVSGGERKRVCI-------GNEIIINPSLLFLDEPTSGLDSTTALRIVQM 337
G +SGGE +RV + + LL LDEP + LD + ++
Sbjct: 116 LDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKI 175
Query: 338 LQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384
L +++ G +V + H + L H + LL G +L G+ E +
Sbjct: 176 LSALSQQGLAIVMSSHDLNHTLRH-AHRAWLLKGGKMLASGRREEVL 221
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 116 bits (294), Expect = 6e-29
Identities = 61/194 (31%), Positives = 96/194 (49%), Gaps = 19/194 (9%)
Query: 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS--- 224
+ ++ L ++ +V PG+ LAL+GPSG+GK+T+L LL R + + G I + S
Sbjct: 65 DGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLF-RFYDIS-SGCIRIDGQDISQVT 122
Query: 225 -KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL--GLE 281
SL+S IG V QD VLF + T+ + + Y + + + + D I G
Sbjct: 123 QASLRSHIGVVPQDTVLF-NDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGY- 180
Query: 282 RCQDTMIGGSFVRGV--SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQ 339
T +G RG+ SGGE++RV I I+ P ++ LDE TS LD++ I L
Sbjct: 181 ---RTQVGE---RGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLA 234
Query: 340 DIAEAGKTVVTTIH 353
+ +T + H
Sbjct: 235 KVCA-NRTTIVVAH 247
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 118 bits (299), Expect = 2e-28
Identities = 49/236 (20%), Positives = 81/236 (34%), Gaps = 23/236 (9%)
Query: 119 KPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFTDVTYKVILKGMTSSEEKDILNGITG 178
F +P + + KF + + L D+ K+ + L G
Sbjct: 231 NNFLKGYLPAENMKIRPDEIKFMLKEVSDLDLSK-DLKTKMKWTKIIKKLGDFQLVVDNG 289
Query: 179 SVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDD 238
GE++ ++GP+G GKTT +L G + GS+T S K + F D
Sbjct: 290 EAKEGEIIGILGPNGIGKTTFARILVG-EITAD-EGSVTPEKQILSY--KPQRIFPNYDG 345
Query: 239 VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSG 298
T L + +V L L R + S V +SG
Sbjct: 346 ------------TVQQYLENASKDALSTSSWFFEEVTKRLNLHRLLE-----SNVNDLSG 388
Query: 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA-EAGKTVVTTIH 353
GE +++ I + L LD+P+S LD + + ++ + E H
Sbjct: 389 GELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDH 444
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 112 bits (281), Expect = 4e-26
Identities = 30/176 (17%), Positives = 72/176 (40%), Gaps = 12/176 (6%)
Query: 180 VNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK-SKIGFVTQD- 237
+L ++G +G GKTT+L +L+G ++ + K + +I ++
Sbjct: 22 PKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKEL 81
Query: 238 --DVLFPHLTVKETLTYAALLRLP--NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFV 293
+ L ++ + L+ LTK + + +V L + +
Sbjct: 82 YSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLNMTN-----LWNKDA 136
Query: 294 RGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVV 349
+SGG +R+ + ++ + D+P+S LD + + + ++++ + K V+
Sbjct: 137 NILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLK-NKYVI 191
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 116 bits (294), Expect = 2e-27
Identities = 74/247 (29%), Positives = 105/247 (42%), Gaps = 61/247 (24%)
Query: 125 DIPEDIE--AGTRERPKFQTEPTLPIYLKFTDVT--YKVILKGMTSSEEKDILNGITGSV 180
D DI+ G + Q + V+ Y E IL I S+
Sbjct: 319 DEDYDIKNGVGAQPIEIKQGR------IDIDHVSFQYN--------DNEAPILKDINLSI 364
Query: 181 NPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS----KSLKSKIGFVTQ 236
GE +A +G SG GK+TL+NL+ R + T G I + H SL+++IG V Q
Sbjct: 365 EKGETVAFVGMSGGGKSTLINLIP-RFYDVT-SGQILIDGHNIKDFLTGSLRNQIGLVQQ 422
Query: 237 DDVLFPHLTVKETLTY------------AALLRLPNTLTKQQKEKRAIDVINEL--GLER 282
D++LF TVKE + AA K A D I L G
Sbjct: 423 DNILF-SDTVKENILLGRPTATDEEVVEAA------------KMANAHDFIMNLPQGY-- 467
Query: 283 CQDTMIGGSFVRGV--SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQD 340
DT +G RGV SGG+++R+ I + NP +L LDE TS LD + I + L
Sbjct: 468 --DTEVGE---RGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDV 522
Query: 341 IAEAGKT 347
+++ +T
Sbjct: 523 LSK-DRT 528
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 111 bits (280), Expect = 2e-27
Identities = 69/231 (29%), Positives = 107/231 (46%), Gaps = 36/231 (15%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS----KSL 227
+L G+T ++ PG+V AL+GP+GSGK+T+ LL L +PT GG + + P L
Sbjct: 34 VLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQ-NLYQPT-GGKVLLDGEPLVQYDHHYL 91
Query: 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQ-----KEKRAIDVINEL--GL 280
+++ V Q+ +LF + +E + Y L T T ++ E A D I+ G
Sbjct: 92 HTQVAAVGQEPLLF-GRSFRENIAYG----LTRTPTMEEITAVAMESGAHDFISGFPQGY 146
Query: 281 ERCQDTMIGGSFVRGV--SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQML 338
DT +G G SGG+R+ V + +I P LL LD TS LD VQ L
Sbjct: 147 ----DTEVGE---TGNQLSGGQRQAVALARALIRKPRLLILDNATSALD-AGNQLRVQRL 198
Query: 339 QDIA--EAGKTVVTTIHQPSSRL--FHKFDKLILLGKGSLLYFGKASEAMA 385
+ A +TV+ +L + ++ L +GS+ G + M
Sbjct: 199 LYESPEWASRTVLLITQ----QLSLAERAHHILFLKEGSVCEQGTHLQLME 245
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 110 bits (277), Expect = 4e-27
Identities = 64/240 (26%), Positives = 114/240 (47%), Gaps = 25/240 (10%)
Query: 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME 209
++ +V++ + EK L ++ +N GE L + G +GSGK+TLL +++G L+E
Sbjct: 3 IEVVNVSHIF---HRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAG-LIE 58
Query: 210 PTVGGSITYNDHPYS-KSLKSKIGFVTQ--DDVLFPHLTVKETLTYAALLRLPNTLTKQQ 266
PT G + Y+ ++ IG Q +D F V + + +A + N +
Sbjct: 59 PT-SGDVLYDGERKKGYEIRRNIGIAFQYPEDQFF-AERVFDEVAFA----VKNFYPDRD 112
Query: 267 KEKRAIDVINELGLERCQDTMIGGSFVR----GVSGGERKRVCIGNEIIINPSLLFLDEP 322
+ +GL+ SF +SGGE++RV I + I+ P +L LDEP
Sbjct: 113 PVPLVKKAMEFVGLDF-------DSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEP 165
Query: 323 TSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382
GLD ++++++ GKTV+ H + + H D++++L KG ++ G E
Sbjct: 166 LVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHV-DRVVVLEKGKKVFDGTRME 224
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 112 bits (281), Expect = 2e-25
Identities = 71/231 (30%), Positives = 111/231 (48%), Gaps = 33/231 (14%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---- 224
E IL G+ V G+ +AL+G SG GK+T + L+ RL +P G ++ +
Sbjct: 402 EVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQ-RLYDPL-DGMVSIDGQDIRTINV 459
Query: 225 KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQ-----KEKRAIDVINEL- 278
+ L+ IG V+Q+ VLF T+ E + Y + +T + KE A D I +L
Sbjct: 460 RYLREIIGVVSQEPVLF-ATTIAENIRYG----RED-VTMDEIEKAVKEANAYDFIMKLP 513
Query: 279 -GLERCQDTMIGGSFVRGV--SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIV 335
DT++G RG SGG+++R+ I ++ NP +L LDE TS LD+ + +V
Sbjct: 514 HQF----DTLVGE---RGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESE-AVV 565
Query: 336 QMLQDIAEAGKTVVTTIHQPSS-RLFHKFDKLILLGKGSLLYFGKASEAMA 385
Q D A G+T + H+ S+ R D + G ++ G E M
Sbjct: 566 QAALDKAREGRTTIVIAHRLSTVR---NADVIAGFDGGVIVEQGNHDELMR 613
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 108 bits (271), Expect = 3e-24
Identities = 55/195 (28%), Positives = 98/195 (50%), Gaps = 27/195 (13%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS----KSL 227
+L G++ V G+ LAL+G SG GK+T++ LL R +P GS+ + + L
Sbjct: 1048 VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLE-RFYDPM-AGSVFLDGKEIKQLNVQWL 1105
Query: 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQ-----KEKRAIDVINEL--GL 280
++++G V+Q+ +LF ++ E + Y ++ ++ KE I+ L
Sbjct: 1106 RAQLGIVSQEPILFD-CSIAENIAYG---DNSRVVSYEEIVRAAKEANIHQFIDSLPDKY 1161
Query: 281 ERCQDTMIGGSFVRGV--SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQML 338
+T +G +G SGG+++R+ I ++ P +L LDE TS LD+ + ++VQ
Sbjct: 1162 ----NTRVGD---KGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESE-KVVQEA 1213
Query: 339 QDIAEAGKTVVTTIH 353
D A G+T + H
Sbjct: 1214 LDKAREGRTCIVIAH 1228
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 2e-25
Identities = 64/247 (25%), Positives = 117/247 (47%), Gaps = 38/247 (15%)
Query: 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME 209
LK ++ Y S+ L GI ++ GEV A++G +G GK+TL +G +++
Sbjct: 8 LKVEELNY-------NYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNG-ILK 59
Query: 210 PTVGGSITYNDHPYS------KSLKSKIGFVTQ--DDVLFPHLTVKETLTYAALLRLPNT 261
P+ G I +++ P L+ IG V Q D+ LF +V + +++ N
Sbjct: 60 PS-SGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSA-SVYQDVSFG----AVNM 113
Query: 262 -LTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGV---SGGERKRVCIGNEIIINPSLL 317
L + + KR + + G+E +D + S G++KRV I +++ P +L
Sbjct: 114 KLPEDEIRKRVDNALKRTGIEHLKD--------KPTHCLSFGQKKRVAIAGVLVMEPKVL 165
Query: 318 FLDEPTSGLDSTTALRIVQMLQDI-AEAGKTVVTTIHQPSSRLFHKF-DKLILLGKGSLL 375
LDEPT+GLD I+++L ++ E G T++ H + + D + ++ +G ++
Sbjct: 166 ILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATH--DIDIVPLYCDNVFVMKEGRVI 223
Query: 376 YFGKASE 382
G E
Sbjct: 224 LQGNPKE 230
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 103 bits (260), Expect = 6e-25
Identities = 46/189 (24%), Positives = 79/189 (41%), Gaps = 20/189 (10%)
Query: 166 SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK 225
E+ L I VN GE + ++GP+GSGKTTLL +SG + P G+I N K
Sbjct: 14 KGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISG--LLPY-SGNIFINGMEVRK 69
Query: 226 SLKSKIGFVTQDDVLFP-HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ 284
+++ I + T + +TV + + L K ++++ L L
Sbjct: 70 -IRNYIRYSTNLPEAYEIGVTVNDIVYLY--EEL-----KGLDRDLFLEMLKALKL---- 117
Query: 285 DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA 344
I + +S G+ V + P ++ LDEP +D+ I + +++
Sbjct: 118 GEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEY--- 174
Query: 345 GKTVVTTIH 353
GK + H
Sbjct: 175 GKEGILVTH 183
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 103 bits (259), Expect = 9e-25
Identities = 57/192 (29%), Positives = 97/192 (50%), Gaps = 27/192 (14%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLL---NLLSGRLMEPTVGGSITYNDHPYSKSLK 228
+L GI + GEV+ ++GPSGSGK+T L NLL E G I +
Sbjct: 39 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLL-----EDFDEGEIIIDGINLKAKDT 93
Query: 229 ------SKIGFVTQDDVLFPHLTVKETLTYA--ALLRLPNTLTKQQKEKRAIDVINELGL 280
++G V Q LFPH+TV +T A + + P +++ E +A+++++++GL
Sbjct: 94 NLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWP----REKAEAKAMELLDKVGL 149
Query: 281 ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQD 340
+ ++ +SGG+ +RV I + + P ++ DEPTS LD ++ +++
Sbjct: 150 KDKAH-----AYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQ 204
Query: 341 IAEAGKT--VVT 350
+A G T VVT
Sbjct: 205 LANEGMTMVVVT 216
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 101 bits (255), Expect = 3e-24
Identities = 59/199 (29%), Positives = 100/199 (50%), Gaps = 29/199 (14%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLL---NLL----SGRL--------MEPTVGGSI 216
+L G++ G+V++++G SGSGK+T L N L G + + G +
Sbjct: 21 VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQL 80
Query: 217 TYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYA--ALLRLPNTLTKQQKEKRAIDV 274
D + L++++ V Q L+ H+TV E + A +L L K +RA+
Sbjct: 81 KVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLS----KHDARERALKY 136
Query: 275 INELGL-ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALR 333
+ ++G+ ER Q + +SGG+++RV I + + P +L DEPTS LD
Sbjct: 137 LAKVGIDERAQG-----KYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGE 191
Query: 334 IVQMLQDIAEAGKT--VVT 350
+++++Q +AE GKT VVT
Sbjct: 192 VLRIMQQLAEEGKTMVVVT 210
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 101 bits (254), Expect = 2e-23
Identities = 56/187 (29%), Positives = 94/187 (50%), Gaps = 20/187 (10%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKS--- 229
LN I+ S++PGE+L ++G SG GKTTLL L+G +P G I+ + +
Sbjct: 20 LNDISLSLDPGEILFIIGASGCGKTTLLRCLAG-FEQPD-SGEISLSGKTIFSKNTNLPV 77
Query: 230 ---KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDT 286
++G++ Q+ VLFPHLTV + Y L Q+ +R ++ G+
Sbjct: 78 RERRLGYLVQEGVLFPHLTVYRNIAYG--LGNGK-GRTAQERQRIEAMLELTGISE---- 130
Query: 287 MIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGK 346
+ G + +SGG+++R + + +P L+ LDEP S LD LR Q+ +D+ A +
Sbjct: 131 -LAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALD--EQLR-RQIREDMIAALR 186
Query: 347 TV-VTTI 352
+ +
Sbjct: 187 ANGKSAV 193
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 97.6 bits (244), Expect = 5e-23
Identities = 50/178 (28%), Positives = 88/178 (49%), Gaps = 26/178 (14%)
Query: 183 GEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDH------PYSKSLKSKIGFVTQ 236
+ L+GP+G+GK+ L L++G +++P G + N P + IGFV Q
Sbjct: 24 RDYCVLLGPTGAGKSVFLELIAG-IVKPD-RGEVRLNGADITPLPPE----RRGIGFVPQ 77
Query: 237 DDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGV 296
D LFPHL+V + Y L + + ++++R ++ +LG+ D +
Sbjct: 78 DYALFPHLSVYRNIAY-GLRNVE----RVERDRRVREMAEKLGIAHLLDRKP-----ARL 127
Query: 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTV-VTTIH 353
SGGER+RV + ++I P LL LDEP S +D + +++++ + V +H
Sbjct: 128 SGGERQRVALARALVIQPRLLLLDEPLSAVDL--KTK-GVLMEELRFVQREFDVPILH 182
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 97.2 bits (243), Expect = 1e-22
Identities = 48/195 (24%), Positives = 92/195 (47%), Gaps = 28/195 (14%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKI- 231
L+G++ SVN G+V ++GP+GSGK+TL+N+++G L + G + + + + +++
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFL-KAD-EGRVYFENKDITNKEPAELY 80
Query: 232 --GFV-T-QDDVLFPHLTVKE-----------TLTYAALLRLPNTLTKQQKE--KRAIDV 274
G V T Q +TV E + + + +++E ++A +
Sbjct: 81 HYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYK---KWIPKEEEMVEKAFKI 137
Query: 275 INELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRI 334
+ L L D +SGG+ K V IG ++ NP ++ +DEP +G+ A I
Sbjct: 138 LEFLKLSHLYDRK-----AGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDI 192
Query: 335 VQMLQDIAEAGKTVV 349
+ ++ G T +
Sbjct: 193 FNHVLELKAKGITFL 207
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 99.2 bits (248), Expect = 1e-22
Identities = 48/162 (29%), Positives = 82/162 (50%), Gaps = 20/162 (12%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYND------HPYSK 225
+ G++ + GE++ L+GPSGSGKTT+L L++G L PT G + P
Sbjct: 30 SVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAG-LERPT-KGDVWIGGKRVTDLPPQ-- 85
Query: 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQD 285
K +G V Q+ LF H+TV + +++ LR + K + + R +++ + LE
Sbjct: 86 --KRNVGLVFQNYALFQHMTVYDNVSFG--LREKR-VPKDEMDARVRELLRFMRLES--- 137
Query: 286 TMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLD 327
F +SGG+++RV + + P +L DEP + +D
Sbjct: 138 --YANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAID 177
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 99.2 bits (248), Expect = 1e-22
Identities = 56/188 (29%), Positives = 89/188 (47%), Gaps = 27/188 (14%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDH------PYSKS 226
L+ ++ V GE ++GP+G+GKT L L++G P G I + P
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAG-FHVPD-SGRILLDGKDVTDLSPE--- 70
Query: 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDT 286
K I FV Q+ LFPH+ VK+ L + +R+ K + KR +D +L +E D
Sbjct: 71 -KHDIAFVYQNYSLFPHMNVKKNLEFG--MRMK----KIKDPKRVLDTARDLKIEHLLDR 123
Query: 287 MIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGK 346
+SGGE++RV + ++ NP +L LDEP S LD + + ++ K
Sbjct: 124 NP-----LTLSGGEQQRVALARALVTNPKILLLDEPLSALDP--RTQ-ENAREMLSVLHK 175
Query: 347 TV-VTTIH 353
+T +H
Sbjct: 176 KNKLTVLH 183
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 93.1 bits (232), Expect = 1e-20
Identities = 51/188 (27%), Positives = 92/188 (48%), Gaps = 21/188 (11%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYND----HPYSKSLK 228
L+ + ++ GE ++GPSG+GKTT + +++G L P+ G + ++D +
Sbjct: 21 LDNVNINIENGERFGILGPSGAGKTTFMRIIAG-LDVPS-TGELYFDDRLVASNGKLIVP 78
Query: 229 SK---IGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQD 285
+ IG V Q L+P+LT E + + L ++K++ KR +V L + +
Sbjct: 79 PEDRKIGMVFQTWALYPNLTAFENIAFP--LTNMK-MSKEEIRKRVEEVAKILDIHHVLN 135
Query: 286 TMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAG 345
R +SG +++RV + ++ +PSLL LDEP S LD+ +R + E
Sbjct: 136 HFP-----RELSGAQQQRVALARALVKDPSLLLLDEPFSNLDA--RMR-DSARALVKEVQ 187
Query: 346 KTV-VTTI 352
+ VT +
Sbjct: 188 SRLGVTLL 195
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 93.4 bits (233), Expect = 5e-20
Identities = 70/269 (26%), Positives = 117/269 (43%), Gaps = 35/269 (13%)
Query: 129 DIEAGTRERPKFQTEPTLPIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLAL 188
+ + E P + + F +V ++ +L+G+ SV PG ++A+
Sbjct: 321 NEKPAIEEADNALALPNVEGSVSFENVEFRY------FENTDPVLSGVNFSVKPGSLVAV 374
Query: 189 MGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP---YS-KSLKSKIGFVTQDDVLFPHL 244
+G +GSGK+TL+NL+ RL++P G + ++ K L+ I V Q+ VLF
Sbjct: 375 LGETGSGKSTLMNLIP-RLIDPE-RGRVEVDELDVRTVKLKDLRGHISAVPQETVLF-SG 431
Query: 245 TVKETLTY----AALLRLPNTLTKQQKEKRAIDVINEL--GLERCQDTMI--GGSFVRGV 296
T+KE L + A + Q D I L G D+ + GG
Sbjct: 432 TIKENLKWGREDATDDEIVEAAKIAQ----IHDFIISLPEGY----DSRVERGGR---NF 480
Query: 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPS 356
SGG+++R+ I ++ P +L LD+ TS +D T RI+ L+ I Q
Sbjct: 481 SGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKR--YTKGCTTFIITQKI 538
Query: 357 SRLFHKFDKLILLGKGSLLYFGKASEAMA 385
DK+++L +G + FG E +
Sbjct: 539 PTALLA-DKILVLHEGKVAGFGTHKELLE 566
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Length = 267 | Back alignment and structure |
|---|
Score = 88.8 bits (221), Expect = 1e-19
Identities = 59/188 (31%), Positives = 89/188 (47%), Gaps = 35/188 (18%)
Query: 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227
E+K IL G++ V+PGEV A+MGP+GSGK+TL L+GR GG++ + K L
Sbjct: 31 EDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKG----KDL 86
Query: 228 -------KSKIG-FVT-QDDVLFPHLTVKETLTYAALLRLPNTLTKQ--QKEKRAIDVIN 276
++ G F+ Q V P ++ + L A N + Q+ D +
Sbjct: 87 LALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTAL-----NAVRSYRGQETLDRFDFQD 141
Query: 277 ELGLERCQDTMIGGSFVR-----GVSGGERKRVCIGNEI----IINPSLLFLDEPTSGLD 327
+ E+ + + G SGGE+KR N+I ++ P L LDE SGLD
Sbjct: 142 LME-EKIALLKMPEDLLTRSVNVGFSGGEKKR----NDILQMAVLEPELCILDESDSGLD 196
Query: 328 STTALRIV 335
AL++V
Sbjct: 197 -IDALKVV 203
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 87.9 bits (219), Expect = 1e-19
Identities = 52/186 (27%), Positives = 88/186 (47%), Gaps = 23/186 (12%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS----- 226
+ GI V G+++ L+G +G+GKTT L+ ++G + G I +N +
Sbjct: 21 AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAG--LVRAQKGKIIFNGQDITNKPAHVI 78
Query: 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINE----LGLER 282
+ I V + +FP LTV E L A R ++ KR ++ I L
Sbjct: 79 NRMGIALVPEGRRIFPELTVYENLMMGAYNR-----KDKEGIKRDLEWIFSLFPRLKERL 133
Query: 283 CQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA 342
Q +GG+ +SGGE++ + IG ++ P LL +DEP+ GL + +++Q I
Sbjct: 134 KQ---LGGT----LSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKIN 186
Query: 343 EAGKTV 348
+ G T+
Sbjct: 187 QEGTTI 192
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 92.2 bits (230), Expect = 1e-19
Identities = 60/179 (33%), Positives = 89/179 (49%), Gaps = 24/179 (13%)
Query: 167 SEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK- 225
++K +L IT + PG+ +AL+GP+GSGKTT++NLL R + G I + K
Sbjct: 365 DKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLM-RFYDVD-RGQILVDGIDIRKI 422
Query: 226 ---SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQ-----KEKRAIDVINE 277
SL+S IG V QD +LF TVKE L Y T ++ K + I
Sbjct: 423 KRSSLRSSIGIVLQDTILF-STTVKENLKYGNP-----GATDEEIKEAAKLTHSDHFIKH 476
Query: 278 L--GLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRI 334
L G +T++ + +S G+R+ + I + NP +L LDE TS +D+ T I
Sbjct: 477 LPEGY----ETVLTDNGE-DLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSI 530
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250 | Back alignment and structure |
|---|
Score = 87.6 bits (218), Expect = 2e-19
Identities = 53/186 (28%), Positives = 85/186 (45%), Gaps = 35/186 (18%)
Query: 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227
+ + IL G+ V GEV ALMGP+G+GK+TL +L+G G I + +++
Sbjct: 14 DGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDG----ENI 69
Query: 228 -------KSKIG-FVT-QDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL 278
+++ G F+ Q V P +T+ L A K +E + ++
Sbjct: 70 LELSPDERARKGLFLAFQYPVEVPGVTIANFLRLAL-----Q--AKLGREVGVAEFWTKV 122
Query: 279 GLERCQDTMIGGSFVR-----GVSGGERKRVCIGNEI----IINPSLLFLDEPTSGLDST 329
+ + S++ G SGGE+KR NEI ++ P+ LDE SGLD
Sbjct: 123 K-KALELLDWDESYLSRYLNEGFSGGEKKR----NEILQLLVLEPTYAVLDETDSGLD-I 176
Query: 330 TALRIV 335
AL++V
Sbjct: 177 DALKVV 182
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 85.8 bits (213), Expect = 4e-18
Identities = 53/190 (27%), Positives = 94/190 (49%), Gaps = 18/190 (9%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK------- 225
LN ++ V G++ ++G SG+GK+TL+ ++ L PT GS+ + +
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNL-LERPT-EGSVLVDGQELTTLSESELT 101
Query: 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQD 285
+ +IG + Q L TV + L L N K + ++R ++++ +GL D
Sbjct: 102 KARRQIGMIFQHFNLLSSRTVFGNVALP--LELDN-TPKDEVKRRVTELLSLVGLGDKHD 158
Query: 286 TMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI-AEA 344
S+ +SGG+++RV I + NP +L D+ TS LD T I+++L+DI
Sbjct: 159 -----SYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRL 213
Query: 345 GKTVVTTIHQ 354
G T++ H+
Sbjct: 214 GLTILLITHE 223
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 82.3 bits (204), Expect = 7e-17
Identities = 58/189 (30%), Positives = 94/189 (49%), Gaps = 21/189 (11%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSIT-----YNDHPYSKS 226
+ ++ V GE + L+GPSG GKTT L +++G L EP+ G I D
Sbjct: 18 AVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAG-LEEPS-RGQIYIGDKLVADPEKGIF 75
Query: 227 LKSK---IGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC 283
+ K I V Q L+PH+TV + + + L+L +Q+ ++R +V LGL
Sbjct: 76 VPPKDRDIAMVFQSYALYPHMTVYDNIAFP--LKLRKV-PRQEIDQRVREVAELLGLTEL 132
Query: 284 QDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE 343
+ R +SGG+R+RV +G I+ P + +DEP S LD+ LR V+M ++ +
Sbjct: 133 LNRK-----PRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDA--KLR-VRMRAELKK 184
Query: 344 AGKTVVTTI 352
+ + T
Sbjct: 185 LQRQLGVTT 193
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 79.9 bits (198), Expect = 4e-16
Identities = 55/188 (29%), Positives = 96/188 (51%), Gaps = 25/188 (13%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVG----GSITYNDHPYSKSL 227
LN I + GE +AL+GPSGSGK+TLL ++G + +PT G + L
Sbjct: 18 ALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAG-IYKPTSGKIYFDEKDVTE------L 70
Query: 228 KSK---IGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ 284
K +G V Q+ L+PH+TV + + + LR +++ +K+ +V L +++
Sbjct: 71 PPKDRNVGLVFQNWALYPHMTVYKNIAFPLELR---KAPREEIDKKVREVAKMLHIDKLL 127
Query: 285 DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA 344
+ + +SGG+++RV I ++ P +L LDEP S LD+ LR +++ ++
Sbjct: 128 N-----RYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDA--LLR-LEVRAELKRL 179
Query: 345 GKTVVTTI 352
K + T
Sbjct: 180 QKELGITT 187
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 81.6 bits (201), Expect = 5e-16
Identities = 34/173 (19%), Positives = 67/173 (38%), Gaps = 27/173 (15%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228
K +LN + + GP+G GK+TL+ ++ ++ +
Sbjct: 447 AKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVD-----GFPTQEE------- 494
Query: 229 SKIGFVTQD-DVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTM 287
+ +V D D +V + + + + ++ D + E G D M
Sbjct: 495 CRTVYVEHDIDGTHSDTSVLDFVFESGV----------GTKEAIKDKLIEFGFT---DEM 541
Query: 288 IGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQD 340
I + +SGG + ++ + ++ N +L LDEPT+ LD+ +V L
Sbjct: 542 IAMP-ISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT 593
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 50.0 bits (119), Expect = 3e-06
Identities = 25/116 (21%), Positives = 52/116 (44%), Gaps = 9/116 (7%)
Query: 264 KQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPT 323
+ K + + LGL+ ++ S +RG+SGG++ ++ + P L+ LDEPT
Sbjct: 873 RPLTRKEIEEHCSMLGLD---PEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPT 929
Query: 324 SGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKF-DKLILLGKGSLLYFG 378
+ LD + + + L++ V+ H S+ +++ + G + G
Sbjct: 930 NYLDRDSLGALSKALKEF---EGGVIIITH--SAEFTKNLTEEVWAVKDGRMTPSG 980
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 49.6 bits (118), Expect = 3e-06
Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 9/84 (10%)
Query: 166 SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK 225
K + I + +A++GP+G+GK+TL+N+L+G L PT G H
Sbjct: 682 PGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGEL-LPTSG---EVYTHE--- 734
Query: 226 SLKSKIGFVTQDDVLFPHLTVKET 249
+I ++ Q + +T
Sbjct: 735 --NCRIAYIKQHAFAHIESHLDKT 756
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 78.4 bits (194), Expect = 1e-15
Identities = 61/192 (31%), Positives = 99/192 (51%), Gaps = 33/192 (17%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITY-----NDHPYSKS 226
++G++ V GE +AL+GPSG GKTT L +L+G + +PT G I + ND P
Sbjct: 18 AVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAG-IYKPT-SGEIYFDDVLVNDIP---- 71
Query: 227 LKSK---IGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC 283
K +G V Q+ L+PH+TV E + + LR +K + EKR +++ +L ++
Sbjct: 72 --PKYREVGMVFQNYALYPHMTVFENIAFP--LRARRI-SKDEVEKRVVEIARKLLIDNL 126
Query: 284 QDTMIGGSFVR---GVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQD 340
D R +SGG+++RV + ++ P +L DEP S LD+ LR + M +
Sbjct: 127 LD--------RKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDA--NLR-MIMRAE 175
Query: 341 IAEAGKTVVTTI 352
I + + T
Sbjct: 176 IKHLQQELGITS 187
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 78.6 bits (194), Expect = 1e-15
Identities = 61/310 (19%), Positives = 122/310 (39%), Gaps = 51/310 (16%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SL 227
IL I+ S++PG+ + L+G +GSGK+TLL+ RL+ G I + +
Sbjct: 36 ILENISFSISPGQRVGLLGRTGSGKSTLLSAFL-RLLNTE--GEIQIDGVSWDSITLEQW 92
Query: 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ--- 284
+ G + Q +F T ++ L PN + I + +
Sbjct: 93 RKAFGVIPQKVFIFSG-TFRKNLD-------PN-------AAHSDQEIWK-VADEVGLRS 136
Query: 285 ---------DTMI--GGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALR 333
D ++ GG +S G ++ +C+ ++ +L LDEP++ LD T +
Sbjct: 137 VIEQFPGKLDFVLVDGGC---VLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTY-Q 192
Query: 334 IVQMLQDIAE--AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIG 391
I++ + + + A TV+ + + L + D+ +++ + + + E Y +
Sbjct: 193 IIR--RTLKQAFADCTVILCEARIEAML--ECDQFLVIEENKVRQYDSILELYHYPADRF 248
Query: 392 CSPQIAMNPAEFL-LDLANGNLHDVSVPSELQDRVQTE---NSENDTANGKPTPAIVHEY 447
+ I FL + + + V V + +R Q S + + I E+
Sbjct: 249 VAGFIGSPKMNFLPVKVTATAIDQVQVELPMPNRQQVWLPVESRDVQVGANMSLGIRPEH 308
Query: 448 LVEAYETRVA 457
L+ + V
Sbjct: 309 LLPSDIADVI 318
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 76.1 bits (188), Expect = 6e-15
Identities = 58/188 (30%), Positives = 90/188 (47%), Gaps = 25/188 (13%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVG----GSITYNDHPYSKSL 227
+N + ++ GE L L+GPSG GKTT L +++G L EPT G G L
Sbjct: 26 AVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAG-LEEPTEGRIYFGDRDVTY------L 78
Query: 228 KSK---IGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ 284
K I V Q ++PH+TV E + + L++ K + +KR L +E
Sbjct: 79 PPKDRNISMVFQSYAVWPHMTVYENIAFP--LKIKKF-PKDEIDKRVRWAAELLQIEELL 135
Query: 285 DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA 344
+ +SGG+R+RV + I++ P +L +DEP S LD+ LR V M +I +
Sbjct: 136 NRY-----PAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDA--KLR-VAMRAEIKKL 187
Query: 345 GKTVVTTI 352
+ + T
Sbjct: 188 QQKLKVTT 195
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A Length = 381 | Back alignment and structure |
|---|
Score = 72.2 bits (178), Expect = 1e-13
Identities = 60/181 (33%), Positives = 91/181 (50%), Gaps = 27/181 (14%)
Query: 171 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSIT-----YNDHPYSK 225
+ I ++ GE + +GPSG GK+TLL +++G +E G + ND P +
Sbjct: 17 VVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAG--LETITSGDLFIGEKRMNDTPPA- 73
Query: 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQD 285
+ +G V Q L+PHL+V E +++ L+L K+ +R V L L D
Sbjct: 74 --ERGVGMVFQSYALYPHLSVAENMSFG--LKL-AGAKKEVINQRVNQVAEVLQLAHLLD 128
Query: 286 TMIGGSFVR---GVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA 342
R +SGG+R+RV IG ++ PS+ LDEP S LD+ ALR VQM +I+
Sbjct: 129 --------RKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDA--ALR-VQMRIEIS 177
Query: 343 E 343
Sbjct: 178 R 178
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 70.4 bits (173), Expect = 2e-13
Identities = 58/236 (24%), Positives = 94/236 (39%), Gaps = 51/236 (21%)
Query: 166 SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK 225
S +L I + G++LA+ G +G+GKT+LL ++ G L G I
Sbjct: 47 SLLGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGEL--EPSEGKI--------- 95
Query: 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQD 285
+I F +Q+ + P T+KE N + E R VI LE D
Sbjct: 96 KHSGRISFCSQNSWIMP-GTIKE-----------NIIGVSYDEYRYRSVIKACQLEE--D 141
Query: 286 ---------TMIGGSFVRGV--SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALR- 333
++G G+ SGG+R R+ + + + L LD P LD T
Sbjct: 142 ISKFAEKDNIVLGE---GGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEI 198
Query: 334 ----IVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385
+ +++ A KT + + K DK+++L +GS ++G SE
Sbjct: 199 FESCVCKLM-----ANKTRILVTSKME--HLKKADKILILHEGSSYFYGTFSELQN 247
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 66.0 bits (162), Expect = 3e-12
Identities = 58/232 (25%), Positives = 90/232 (38%), Gaps = 42/232 (18%)
Query: 166 SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK 225
+L I + G++LA+ G +G+GKT+LL ++ G L G I
Sbjct: 17 EEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGEL--EPSEGKI--------- 65
Query: 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTL-TKQQKEKRAIDVINELGLERCQ 284
+I F +Q + P T+KE N + E R VI LE
Sbjct: 66 KHSGRISFCSQFSWIMP-GTIKE-----------NIIFGVSYDEYRYRSVIKACQLEE-- 111
Query: 285 D---------TMIGGSFVRGV--SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALR 333
D ++G G+ SGG+R R+ + + + L LD P LD T
Sbjct: 112 DISKFAEKDNIVLGE---GGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKE 168
Query: 334 IVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385
I + A KT + + K DK+++L +GS ++G SE
Sbjct: 169 IFESCVCKLMANKTRILVTSKME--HLKKADKILILHEGSSYFYGTFSELQN 218
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 68.3 bits (166), Expect = 7e-12
Identities = 77/538 (14%), Positives = 165/538 (30%), Gaps = 142/538 (26%)
Query: 74 RSAQLKLELDE-VSSGAALSRASSASLGLSFSFTGFTMPPDEIADSKPFSDDDIPED--- 129
+S K E+D + S A+S F +E+ + F ++ + +
Sbjct: 43 KSILSKEEIDHIIMSKDAVSG-------TLRLFWTLLSKQEEMV--QKFVEEVLRINYKF 93
Query: 130 IEAGTRERPKFQTEPTLPIYLKFTDVTY---KVILKGMTSSEEK--DILNGITGSVNPGE 184
+ + + + Q +Y++ D Y +V K S + + + + P +
Sbjct: 94 LMSPIKTEQR-QPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALL-ELRPAK 151
Query: 185 VLALMGPSGSGKTTLLN--LLSGRLMEPTVGG----SITYNDHPYS--KSLKSKIGFVTQ 236
+ + G GSGKT + LS ++ ++ + P + + L+ + +
Sbjct: 152 NVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDP 211
Query: 237 DDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAI----DV-----INELGLERCQDTM 287
+ + L ++ L K + + + +V N L C+ +
Sbjct: 212 NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNL-SCK-IL 269
Query: 288 I---GGSFVRGVSGGERKRVCIGNEII-INP----SLL--FLDEPTSGL---DSTTALRI 334
+ +S + + + + + P SLL +LD L TT R
Sbjct: 270 LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRR 329
Query: 335 VQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIG--- 391
+ + IAE+ + + T K +I + SL + +E F +
Sbjct: 330 LSI---IAESIRDGLATWDNWKHVNCDKLTTII---ESSLNVL-EPAEYRKMFDRLSVFP 382
Query: 392 ----------------CSPQIAMNPAEFLLD--LANGN-------LHDVSVPSELQDRVQ 426
M L L + + ++
Sbjct: 383 PSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPS------IYLELK 436
Query: 427 TENSENDTANGKPTPAIVHEYLVEAYET--------------------------RVAEN- 459
+ EN+ A +H +V+ Y + E+
Sbjct: 437 VKL-ENEYA--------LHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHP 487
Query: 460 EKKKLMAPIPLDEE-IKAKVSSPKRNWGASWIQQYTIL--------FRRGIKEHRHDY 508
E+ L + LD ++ K+ R+ +W +IL ++ I ++ Y
Sbjct: 488 ERMTLFRMVFLDFRFLEQKI----RHDSTAWNASGSILNTLQQLKFYKPYICDNDPKY 541
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 64.5 bits (158), Expect = 9e-12
Identities = 55/234 (23%), Positives = 96/234 (41%), Gaps = 44/234 (18%)
Query: 166 SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK 225
+ + LNGIT S+ G ++A++G G GK++LL+ L + V G +
Sbjct: 14 ARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEM--DKVEGHV--------- 62
Query: 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTL-TKQQKEKRAIDVINELGLERCQ 284
++K + +V Q + + +++E N L Q +E VI L
Sbjct: 63 AIKGSVAYVPQQAWIQ-NDSLRE-----------NILFGCQLEEPYYRSVIQACALLP-- 108
Query: 285 D---------TMIGGSFVRGV--SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALR 333
D T IG +GV SGG+++RV + + N + D+P S +D+
Sbjct: 109 DLEILPSGDRTEIGE---KGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKH 165
Query: 334 IVQ--MLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385
I + + KT + H S + D +I++ G + G E +A
Sbjct: 166 IFENVIGPKGMLKNKTRILVTHSMS--YLPQVDVIIVMSGGKISEMGSYQELLA 217
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339 | Back alignment and structure |
|---|
Score = 59.3 bits (143), Expect = 2e-09
Identities = 40/264 (15%), Positives = 79/264 (29%), Gaps = 21/264 (7%)
Query: 121 FSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFTDVTYKVILKGMTSSEEKDILNGITGSV 180
F D I R K + + + +K + + + K I + +
Sbjct: 75 FEKDGTKYRIT---RRFLKGYSSGEIHAMKRLVGNEWKHVTEPSS----KAISAFMEKLI 127
Query: 181 NPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVL 240
L + +L R ++ + Y K + K G ++++
Sbjct: 128 PYNIFLNAIYIRQGQIDAILESDEAREKVVREVLNLDKFETAYKKLSELKGGSGGTEELI 187
Query: 241 FPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGV---- 296
K AAL ++ ++ E + + +
Sbjct: 188 EKVKKYKALAREAALSKIGELASEIFAEFTEGKYSEVVVRAEENKVRLFVVWEGKERPLT 247
Query: 297 --SGGERKRVC------IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTV 348
SGGER + + + SLL LDEPT LD +++ +++ + V
Sbjct: 248 FLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQV 307
Query: 349 VTTIHQPSSRLFHKFDKLILLGKG 372
+ H L D +I +
Sbjct: 308 ILVSHDEE--LKDAADHVIRISLE 329
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* Length = 148 | Back alignment and structure |
|---|
Score = 52.8 bits (127), Expect = 2e-08
Identities = 26/144 (18%), Positives = 48/144 (33%), Gaps = 21/144 (14%)
Query: 237 DDVLFPHLTVKETLTY-AALLRLPNTLTKQQKEKRAIDV-INELGLERCQDTMIGGSFVR 294
+ L + A + + E+ + + + G ER +
Sbjct: 8 EAAL--SKIGELASEIFAEFTEGKYSEVVVRAEENKVRLFVVWEGKERPLTFL------- 58
Query: 295 GVSGGERKRVCIGNEI------IINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTV 348
SGGER + + + SLL LDEPT LD +++ +++ + V
Sbjct: 59 --SGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQV 116
Query: 349 VTTIHQPSSRLFHKFDKLILLGKG 372
+ H L D +I +
Sbjct: 117 ILVSHDEE--LKDAADHVIRISLE 138
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 746 | ||||
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 8e-42 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 2e-40 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 1e-39 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 3e-39 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 2e-38 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 4e-38 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 6e-37 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 9e-37 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 1e-36 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 4e-36 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 4e-36 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 1e-34 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 2e-34 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 1e-32 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 1e-31 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 3e-30 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 4e-30 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 2e-29 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 5e-28 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 2e-24 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 2e-10 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 4e-10 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 3e-09 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 2e-05 | |
| d1znwa1 | 182 | c.37.1.1 (A:20-201) Guanylate kinase {Mycobacteriu | 4e-05 | |
| d1w1wa_ | 427 | c.37.1.12 (A:) Smc head domain {Baker's yeast (Sac | 1e-04 | |
| d1qhxa_ | 178 | c.37.1.3 (A:) Chloramphenicol phosphotransferase { | 2e-04 | |
| d1zp6a1 | 176 | c.37.1.25 (A:6-181) Hypothetical protein Atu3015 { | 2e-04 | |
| d1s96a_ | 205 | c.37.1.1 (A:) Guanylate kinase {Escherichia coli [ | 6e-04 | |
| d2i3ba1 | 189 | c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 | 6e-04 | |
| d1np6a_ | 170 | c.37.1.10 (A:) Molybdopterin-guanine dinucleotide | 0.001 | |
| d1knqa_ | 171 | c.37.1.17 (A:) Gluconate kinase {Escherichia coli | 0.001 | |
| d1m8pa3 | 183 | c.37.1.15 (A:391-573) ATP sulfurylase C-terminal d | 0.001 | |
| d1rz3a_ | 198 | c.37.1.6 (A:) Hypothetical protein rbstp0775 {Baci | 0.001 | |
| d1nrjb_ | 209 | c.37.1.8 (B:) Signal recognition particle receptor | 0.002 | |
| d1f5na2 | 277 | c.37.1.8 (A:7-283) Interferon-induced guanylate-bi | 0.002 | |
| d1x6va3 | 195 | c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kin | 0.004 |
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 149 bits (379), Expect = 8e-42
Identities = 65/224 (29%), Positives = 111/224 (49%), Gaps = 17/224 (7%)
Query: 165 TSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS 224
E L + ++ GE +++MGPSGSGK+T+LN++ L +PT G + ++ +
Sbjct: 13 MGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGC-LDKPT-EGEVYIDNIKTN 70
Query: 225 --------KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVIN 276
K + KIGFV Q L P LT E + + + ++ +++ KRA++ +
Sbjct: 71 DLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLK 130
Query: 277 ELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQ 336
LE +SGG+++RV I + NP ++ D+PT LDS T +I+Q
Sbjct: 131 MAELEE----RFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQ 186
Query: 337 MLQDIA-EAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379
+L+ + E GKTVV H + + +++I L G + K
Sbjct: 187 LLKKLNEEDGKTVVVVTHDIN--VARFGERIIYLKDGEVEREEK 228
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 146 bits (371), Expect = 2e-40
Identities = 58/217 (26%), Positives = 102/217 (47%), Gaps = 14/217 (6%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS--KS 226
+N + ++ GE L L+GPSG GKTT L +++G L EPT G I + D +
Sbjct: 18 NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAG-LEEPT-EGRIYFGDRDVTYLPP 75
Query: 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDT 286
I V Q ++PH+TV E + + ++ K + +KR L +E +
Sbjct: 76 KDRNISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLN- 131
Query: 287 MIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA-EAG 345
+ +SGG+R+RV + I++ P +L +DEP S LD+ + + ++ + +
Sbjct: 132 ----RYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLK 187
Query: 346 KTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382
T + H D++ ++ +G LL G +E
Sbjct: 188 VTTIYVTHDQVE-AMTMGDRIAVMNRGQLLQIGSPTE 223
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 145 bits (368), Expect = 1e-39
Identities = 53/216 (24%), Positives = 95/216 (43%), Gaps = 18/216 (8%)
Query: 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKS 229
+L I ++ GE+LA+ G +GSGKT+LL L+ G +E + G I ++
Sbjct: 49 NPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILG-ELEAS-EGIIKHSG--------- 97
Query: 230 KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIG 289
++ F +Q + P T+KE + + + K + +T++G
Sbjct: 98 RVSFCSQFSWIMPG-TIKENIIFGVSYD---EYRYKSVVKACQLQQDITKFAEQDNTVLG 153
Query: 290 GSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVV 349
V +SGG+R R+ + + + L LD P LD T ++ + A KT +
Sbjct: 154 EGGVT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRI 212
Query: 350 TTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385
+ K DK+++L +GS ++G SE +
Sbjct: 213 LVTSKMEH--LRKADKILILHQGSSYFYGTFSELQS 246
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 143 bits (363), Expect = 3e-39
Identities = 60/231 (25%), Positives = 112/231 (48%), Gaps = 26/231 (11%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---- 224
++L G++ G+V++++G SGSGK+T L ++ +E G+I N +
Sbjct: 14 GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINF--LEKPSEGAIIVNGQNINLVRD 71
Query: 225 -------------KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRA 271
+ L++++ V Q L+ H+TV E + A + L L+K +RA
Sbjct: 72 KDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLG--LSKHDARERA 129
Query: 272 IDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTA 331
+ + ++G++ G + +SGG+++RV I + + P +L DEPTS LD
Sbjct: 130 LKYLAKVGIDERAQ----GKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELV 185
Query: 332 LRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382
+++++Q +AE GKT+V H+ H +I L +G + G +
Sbjct: 186 GEVLRIMQQLAEEGKTMVVVTHEMGF-ARHVSSHVIFLHQGKIEEEGDPEQ 235
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 141 bits (356), Expect = 2e-38
Identities = 70/242 (28%), Positives = 115/242 (47%), Gaps = 23/242 (9%)
Query: 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME 209
+ V+++ + E IL I S+ GE +A +G SG GK+TL+NL+ R +
Sbjct: 17 IDIDHVSFQY------NDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIP-RFYD 69
Query: 210 PTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQ 265
T G I + H SL+++IG V Q D + TVKE + + +
Sbjct: 70 VT-SGQILIDGHNIKDFLTGSLRNQIGLV-QQDNILFSDTVKENILLGRPTATDEEVVEA 127
Query: 266 QKEKRAIDVINEL--GLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPT 323
K A D I L G DT +G V+ +SGG+++R+ I + NP +L LDE T
Sbjct: 128 AKMANAHDFIMNLPQGY----DTEVGERGVK-LSGGQKQRLSIARIFLNNPPILILDEAT 182
Query: 324 SGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383
S LD + I + L +++ +T + H+ S+ DK++++ G ++ G E
Sbjct: 183 SALDLESESIIQEALDVLSK-DRTTLIVAHRLST--ITHADKIVVIENGHIVETGTHREL 239
Query: 384 MA 385
+A
Sbjct: 240 IA 241
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 140 bits (353), Expect = 4e-38
Identities = 66/242 (27%), Positives = 120/242 (49%), Gaps = 19/242 (7%)
Query: 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME 209
++F DV++ + + +L G+T ++ PGEV AL+GP+GSGK+T+ LL L +
Sbjct: 12 VQFQDVSFA-----YPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALL-QNLYQ 65
Query: 210 PTVGGSITYNDHPYS----KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLR-LPNTLTK 264
PT GG + + P + L ++ V Q+ +F +++E + Y + +T
Sbjct: 66 PT-GGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGR-SLQENIAYGLTQKPTMEEITA 123
Query: 265 QQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTS 324
+ A I+ GL + DT + +SGG+R+ V + +I P +L LD+ TS
Sbjct: 124 AAVKSGAHSFIS--GLPQGYDTEV-DEAGSQLSGGQRQAVALARALIRKPCVLILDDATS 180
Query: 325 GLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383
LD+ + L++ Q+L + E ++V+ S L + D ++ L G++ G +
Sbjct: 181 ALDANSQLQVEQLLYESPERYSRSVLLITQHLS--LVEQADHILFLEGGAIREGGTHQQL 238
Query: 384 MA 385
M
Sbjct: 239 ME 240
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 135 bits (341), Expect = 6e-37
Identities = 44/194 (22%), Positives = 97/194 (50%), Gaps = 15/194 (7%)
Query: 161 LKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYND 220
++ ++ +K +L IT ++ G V+ GP+G GKTTLL +S ++P G I YN
Sbjct: 5 IRDLSVGYDKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTIST-YLKPL-KGEIIYNG 62
Query: 221 HPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL 280
P +K +K KI F+ ++ ++ ++V++ L A L + + +D + + +
Sbjct: 63 VPITK-VKGKIFFLPEEIIVPRKISVEDYLKAVASLY-----GVKVNKNEIMDALESVEV 116
Query: 281 ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQD 340
+ + +S G +RV + + +++N + LD+P +D + ++++ + +
Sbjct: 117 LDLKK------KLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILE 170
Query: 341 I-AEAGKTVVTTIH 353
I E G ++++
Sbjct: 171 ILKEKGIVIISSRE 184
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 136 bits (344), Expect = 9e-37
Identities = 62/242 (25%), Positives = 113/242 (46%), Gaps = 22/242 (9%)
Query: 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME 209
L+F +VT+ E L I + G+ +AL+G SGSGK+T+ +L++
Sbjct: 14 LEFRNVTFT------YPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITR--FY 65
Query: 210 PTVGGSITYNDHPYS----KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQ 265
G I + H SL++++ V+Q+ LF + +
Sbjct: 66 DIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEA 125
Query: 266 QKEKRAIDVINEL--GLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPT 323
+ A+D IN++ GL DT+IG +SGG+R+R+ I ++ + +L LDE T
Sbjct: 126 ARMAYAMDFINKMDNGL----DTIIG-ENGVLLSGGQRQRIAIARALLRDSPILILDEAT 180
Query: 324 SGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383
S LD+ + I L ++ + +T + H+ S + D+++++ G ++ G SE
Sbjct: 181 SALDTESERAIQAALDELQK-NRTSLVIAHRLS--TIEQADEIVVVEDGIIVERGTHSEL 237
Query: 384 MA 385
+A
Sbjct: 238 LA 239
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 135 bits (342), Expect = 1e-36
Identities = 66/239 (27%), Positives = 116/239 (48%), Gaps = 19/239 (7%)
Query: 151 KFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP 210
F ++ ++ + IL+ I S+ GEV+ ++G SGSGK+TL L+ R P
Sbjct: 3 TFRNIRFR------YKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQ-RFYIP 55
Query: 211 TVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQ 266
G + + H + L+ ++G V QD+VL ++ + ++ A +
Sbjct: 56 E-NGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNR-SIIDNISLANPGMSVEKVIYAA 113
Query: 267 KEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGL 326
K A D I+EL G+ G+SGG+R+R+ I ++ NP +L DE TS L
Sbjct: 114 KLAGAHDFISELREGYNTIVGEQGA---GLSGGQRQRIAIARALVNNPKILIFDEATSAL 170
Query: 327 DSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385
D + I++ + I + G+TV+ H+ S D++I++ KG ++ GK E ++
Sbjct: 171 DYESEHVIMRNMHKICK-GRTVIIIAHRLS--TVKNADRIIVMEKGKIVEQGKHKELLS 226
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 134 bits (338), Expect = 4e-36
Identities = 66/240 (27%), Positives = 111/240 (46%), Gaps = 19/240 (7%)
Query: 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME 209
L V + + + IL I+ P ++A GPSG GK+T+ +LL +
Sbjct: 2 LSARHVDFAY-------DDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLER-FYQ 53
Query: 210 PTVGGSITYNDHPYS----KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQ 265
PT G IT + P ++ +S+IGFV+QD + T++E LTY + Q
Sbjct: 54 PT-AGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAG-TIRENLTYGLEGDYTDEDLWQ 111
Query: 266 QKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSG 325
+ E ++ + G +SGG+R+R+ I + NP +L LDE T+
Sbjct: 112 VLDLAFARSFVENMPDQLNTEV--GERGVKISGGQRQRLAIARAFLRNPKILMLDEATAS 169
Query: 326 LDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385
LDS + + + L + + G+T + H+ S+ DK+ + KG + GK +E +A
Sbjct: 170 LDSESESMVQKALDSLMK-GRTTLVIAHRLST--IVDADKIYFIEKGQITGSGKHNELVA 226
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 134 bits (339), Expect = 4e-36
Identities = 53/229 (23%), Positives = 104/229 (45%), Gaps = 23/229 (10%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS-----KS 226
L+G++ SVN G+V ++GP+GSGK+TL+N+++G ++ G + + + + +
Sbjct: 19 ALDGVSISVNKGDVTLIIGPNGSGKSTLINVITG-FLKAD-EGRVYFENKDITNKEPAEL 76
Query: 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLT----------KQQKEKRAIDVIN 276
I Q +TV E L + + L +++ ++A ++
Sbjct: 77 YHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILE 136
Query: 277 ELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQ 336
L L D G +SGG+ K V IG ++ NP ++ +DEP +G+ A I
Sbjct: 137 FLKLSHLYDRKAGE-----LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFN 191
Query: 337 MLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385
+ ++ G T + H+ + + D L ++ G ++ G+ E +
Sbjct: 192 HVLELKAKGITFLIIEHRLDI-VLNYIDHLYVMFNGQIIAEGRGEEEIK 239
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 129 bits (326), Expect = 1e-34
Identities = 57/226 (25%), Positives = 103/226 (45%), Gaps = 19/226 (8%)
Query: 165 TSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS 224
+ LN ++ V G++ ++G SG+GK+TL+ ++ L PT GS+ + +
Sbjct: 13 QGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNL-LERPT-EGSVLVDGQELT 70
Query: 225 K-------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINE 277
+ +IG + Q L TV + L K + ++R ++++
Sbjct: 71 TLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEVKRRVTELLSL 127
Query: 278 LGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQM 337
+GL D S+ +SGG+++RV I + NP +L DE TS LD T I+++
Sbjct: 128 VGLGDKHD-----SYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILEL 182
Query: 338 LQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382
L+DI G T++ H+ + D + ++ G L+ SE
Sbjct: 183 LKDINRRLGLTILLITHEMDV-VKRICDCVAVISNGELIEQDTVSE 227
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 129 bits (325), Expect = 2e-34
Identities = 54/224 (24%), Positives = 105/224 (46%), Gaps = 14/224 (6%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY---SK 225
+K+IL GI+ + GE+ L+GP+G+GKTT L ++S L++P+ G +T
Sbjct: 14 KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIIST-LIKPS-SGIVTVFGKNVVEEPH 71
Query: 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQD 285
++ I ++ ++ + ++ E L + A + + E+ GL
Sbjct: 72 EVRKLISYLPEEAGAYRNMQGIEYLRFVAGFY---ASSSSEIEEMVERATEIAGLGEKIK 128
Query: 286 TMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAG 345
V S G +++ I +++NP L LDEPTSGLD A + ++L+ ++ G
Sbjct: 129 DR-----VSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEG 183
Query: 346 KTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSS 389
T++ + H + D++ L+ G+++ G E + +
Sbjct: 184 LTILVSSHNMLE-VEFLCDRIALIHNGTIVETGTVEELKERYKA 226
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 124 bits (312), Expect = 1e-32
Identities = 55/220 (25%), Positives = 95/220 (43%), Gaps = 18/220 (8%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYN-----DHPY 223
+ GI V G+++ L+G +G+GKTT L+ ++G + G I +N + P
Sbjct: 18 AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAG--LVRAQKGKIIFNGQDITNKPA 75
Query: 224 SKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL-GLER 282
+ I V + +FP LTV E L A R K+ ++ + + L+
Sbjct: 76 HVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKD----KEGIKRDLEWIFSLFPRLKE 131
Query: 283 CQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA 342
+SGGE++ + IG ++ P LL +DEP+ GL + +++Q I
Sbjct: 132 RLKQ-----LGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKIN 186
Query: 343 EAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382
+ G T++ +L G ++ GKASE
Sbjct: 187 QEGTTILLVEQNALG-ALKVAHYGYVLETGQIVLEGKASE 225
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 121 bits (304), Expect = 1e-31
Identities = 58/228 (25%), Positives = 93/228 (40%), Gaps = 28/228 (12%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---- 224
E L ++G V GE+L L+GP+G+GK+TLL ++G M GSI + P
Sbjct: 11 ESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG--MTSG-KGSIQFAGQPLEAWSA 67
Query: 225 KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ 284
L +++Q V LT + + + DV L L+
Sbjct: 68 TKLALHRAYLSQQQTPPFATPVWHYLTLHQ--------HDKTRTELLNDVAGALALDD-- 117
Query: 285 DTMIGGSFVRGVSGGERKRVCIGNEII-------INPSLLFLDEPTSGLDSTTALRIVQM 337
G +SGGE +RV + ++ LL LDEP + LD + ++
Sbjct: 118 ---KLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKI 174
Query: 338 LQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385
L + + G +V + H + L H + LL G +L G+ E +
Sbjct: 175 LSALCQQGLAIVMSSHDLNHTLRH-AHRAWLLKGGKMLASGRREEVLT 221
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 117 bits (294), Expect = 3e-30
Identities = 64/223 (28%), Positives = 104/223 (46%), Gaps = 20/223 (8%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228
E + ++ V GE + L+GPSG GKTT L +++G L EP+ G I D + K
Sbjct: 15 EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAG-LEEPS-RGQIYIGDKLVADPEK 72
Query: 229 SK--------IGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL 280
I V Q L+PH+TV + + + LR + +Q+ ++R +V LGL
Sbjct: 73 GIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLR---KVPRQEIDQRVREVAELLGL 129
Query: 281 ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQD 340
+ R +SGG+R+RV +G I+ P + +DEP S LD+ +R+ L+
Sbjct: 130 TELLNRK-----PRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKK 184
Query: 341 IAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382
+ G T + H D++ ++ +G L G E
Sbjct: 185 LQRQLGVTTIYVTHDQVE-AMTMGDRIAVMNRGVLQQVGSPDE 226
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 116 bits (293), Expect = 4e-30
Identities = 59/217 (27%), Positives = 101/217 (46%), Gaps = 14/217 (6%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS--KS 226
E + I ++ GE + +GPSG GK+TLL +++G +E G + + +
Sbjct: 12 EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAG--LETITSGDLFIGEKRMNDTPP 69
Query: 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDT 286
+ +G V Q L+PHL+V E +++ L K+ +R V L L D
Sbjct: 70 AERGVGMVFQSYALYPHLSVAENMSFGLKLAGAK---KEVINQRVNQVAEVLQLAHLLD- 125
Query: 287 MIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA-EAG 345
+ +SGG+R+RV IG ++ PS+ LDEP S LD+ +++ + + G
Sbjct: 126 ----RKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLG 181
Query: 346 KTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382
+T++ H DK+++L G + GK E
Sbjct: 182 RTMIYVTHDQVE-AMTLADKIVVLDAGRVAQVGKPLE 217
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 114 bits (287), Expect = 2e-29
Identities = 62/225 (27%), Positives = 104/225 (46%), Gaps = 17/225 (7%)
Query: 161 LKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYND 220
++ ++ + L+ ++ V GE ++GP+G+GKT L L++G G I +
Sbjct: 4 IESLSRKWKNFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAG--FHVPDSGRILLDG 61
Query: 221 HPYSK--SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL 278
+ K I FV Q+ LFPH+ VK+ L + + K + KR +D +L
Sbjct: 62 KDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGM------RMKKIKDPKRVLDTARDL 115
Query: 279 GLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQML 338
+E D +SGGE++RV + ++ NP +L LDEP S LD T +ML
Sbjct: 116 KIEHLLD-----RNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREML 170
Query: 339 QDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382
+ + TV+ H + D++ ++ G L+ GK E
Sbjct: 171 SVLHKKNKLTVLHITHDQTE-ARIMADRIAVVMDGKLIQVGKPEE 214
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 110 bits (277), Expect = 5e-28
Identities = 61/235 (25%), Positives = 114/235 (48%), Gaps = 20/235 (8%)
Query: 158 KVILKGMT---SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGG 214
++I+K ++ + L+ + ++ GE ++GPSG+GKTT + +++G L P+ G
Sbjct: 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAG-LDVPSTGE 61
Query: 215 ------SITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKE 268
+ N KIG V Q L+P+LT E + + ++K++
Sbjct: 62 LYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM---KMSKEEIR 118
Query: 269 KRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDS 328
KR +V L + + R +SG +++RV + ++ +PSLL LDEP S LD+
Sbjct: 119 KRVEEVAKILDIHHVLNHFP-----RELSGAQQQRVALARALVKDPSLLLLDEPFSNLDA 173
Query: 329 TTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382
+++++ G T++ H P+ +F D++ +L KG L+ GK +
Sbjct: 174 RMRDSARALVKEVQSRLGVTLLVVSHDPAD-IFAIADRVGVLVKGKLVQVGKPED 227
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 100 bits (250), Expect = 2e-24
Identities = 52/204 (25%), Positives = 96/204 (47%), Gaps = 16/204 (7%)
Query: 182 PGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS--KSLKSKIGFVTQDDV 239
+ L+GP+G+GK+ L L++G +++P G + N + + IGFV QD
Sbjct: 23 GRDYCVLLGPTGAGKSVFLELIAG-IVKPD-RGEVRLNGADITPLPPERRGIGFVPQDYA 80
Query: 240 LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299
LFPHL+V + Y + + ++++R ++ E+ + +SGG
Sbjct: 81 LFPHLSVYRNIAYG-----LRNVERVERDRRVREM-----AEKLGIAHLLDRKPARLSGG 130
Query: 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSR 358
ER+RV + ++I P LL LDEP S +D T +++ L+ + ++ H
Sbjct: 131 ERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIE- 189
Query: 359 LFHKFDKLILLGKGSLLYFGKASE 382
D++ ++ G ++ GK E
Sbjct: 190 AAMLADEVAVMLNGRIVEKGKLKE 213
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 57.3 bits (137), Expect = 4e-10
Identities = 19/194 (9%), Positives = 45/194 (23%), Gaps = 34/194 (17%)
Query: 186 LALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLT 245
+ + G G GKTTL+ + + G ++V P
Sbjct: 3 IIITGEPGVGKTTLVKKIVE-RLGKRAIG-------------------FWTEEVRDPETK 42
Query: 246 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305
+ + + + + + ++ +
Sbjct: 43 KRTGFRIITTEGKKKIFSSKFFTSKKLVGSYGVNVQYFE-----------ELAIPILERA 91
Query: 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDK 365
++ +DE + + Q + + VV TI +
Sbjct: 92 YREAKKDRRKVIIIDEIGKMELFSKK-FRDLVRQIMHDPNVNVVATIPIRDVHPL--VKE 148
Query: 366 LILLGKGSLLYFGK 379
+ L L+
Sbjct: 149 IRRLPGAVLIELTP 162
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 182 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 42.7 bits (99), Expect = 4e-05
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 183 GEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP 222
G V+ L GPS GK+T++ L R+ P + S++
Sbjct: 2 GRVVVLSGPSAVGKSTVVRCLRERI--PNLHFSVSATTRA 39
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 427 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 42.8 bits (99), Expect = 1e-04
Identities = 19/89 (21%), Positives = 31/89 (34%), Gaps = 6/89 (6%)
Query: 283 CQDTMIGGSFVRGVSGGERKRVCIGNEIII---NPS-LLFLDEPTSGLDSTTALRIVQML 338
+ + +SGGE+ + I PS LDE + LD T RI +
Sbjct: 320 ATPPLKRFKDMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYI 379
Query: 339 QDIAEAGKTVVTTIHQPSSRLFHKFDKLI 367
+ + + +F K D L+
Sbjct: 380 RRHRNPDLQFIVISLKN--TMFEKSDALV 406
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Score = 40.8 bits (94), Expect = 2e-04
Identities = 15/93 (16%), Positives = 30/93 (32%)
Query: 183 GEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFP 242
++ L G S +GK+ ++ L L EP + + ++S G + D
Sbjct: 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAEGGIEFDADGGV 62
Query: 243 HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVI 275
+ + A + + DV
Sbjct: 63 SIGPEFRALEGAWAEGVVAMARAGARIIIDDVF 95
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Score = 40.7 bits (94), Expect = 2e-04
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 183 GEVLALMGPSGSGKTTLLNLLSGRLMEPTV 212
G +L L G GSGK+T+ L+ P V
Sbjct: 4 GNILLLSGHPGSGKSTIAEALANLPGVPKV 33
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} Length = 205 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Score = 39.4 bits (91), Expect = 6e-04
Identities = 9/40 (22%), Positives = 18/40 (45%)
Query: 183 GEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP 222
G + + PSG+GK++L+ L S+++
Sbjct: 2 GTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQ 41
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Length = 189 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.2 bits (90), Expect = 6e-04
Identities = 25/173 (14%), Positives = 54/173 (31%), Gaps = 7/173 (4%)
Query: 185 VLALMGPSGSGKTTLLNLLSGRLME--PTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFP 242
+ L GP G GKTTL++ S L V G T + + + ++
Sbjct: 3 HVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPLS 62
Query: 243 HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL--ERCQDTMIGGSFVRGVSGGE 300
+ ++ + E+ A+ V+ Q + + +
Sbjct: 63 RVGLEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCV-IDEIGKMELFS 121
Query: 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIH 353
+ + + + P + L AL V+ +++ + VT +
Sbjct: 122 QLFIQAVRQTLSTPGTIILGTIPVPKGKPLAL--VEEIRNRKDVKVFNVTKEN 172
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Score = 38.4 bits (88), Expect = 0.001
Identities = 13/37 (35%), Positives = 18/37 (48%)
Query: 185 VLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDH 221
+LA SG+GKTTLL L L + + + H
Sbjct: 4 LLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTH 40
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Score = 38.5 bits (88), Expect = 0.001
Identities = 10/40 (25%), Positives = 20/40 (50%)
Query: 181 NPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYND 220
+ + LMG SGSGK+ + + ++ +L + G +
Sbjct: 4 HDHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPR 43
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} Length = 183 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Score = 38.5 bits (88), Expect = 0.001
Identities = 8/27 (29%), Positives = 11/27 (40%)
Query: 183 GEVLALMGPSGSGKTTLLNLLSGRLME 209
G + L G SGK + L L +
Sbjct: 6 GFTIFLTGYMNSGKDAIARALQVTLNQ 32
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} Length = 198 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Score = 38.2 bits (87), Expect = 0.001
Identities = 16/39 (41%), Positives = 20/39 (51%)
Query: 185 VLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY 223
VL + G S SGKTTL N LS L E + + + D
Sbjct: 24 VLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHI 62
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 209 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.1 bits (87), Expect = 0.002
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 5/44 (11%)
Query: 185 VLALMGPSGSGKTTLLNLLSGRLMEPTVG-----GSITYNDHPY 223
+ + GP SGKT+LL LL+ + PTV + Y+
Sbjct: 5 SIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADYDGSGV 48
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 277 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.5 bits (89), Expect = 0.002
Identities = 18/74 (24%), Positives = 35/74 (47%), Gaps = 6/74 (8%)
Query: 165 TSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSI---TYNDH 221
+ E IL+ IT + V+A++G +GK+ L+N L+G+ ++G ++ T
Sbjct: 17 ANPEALKILSAITQPMV---VVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIW 73
Query: 222 PYSKSLKSKIGFVT 235
+ K G +
Sbjct: 74 MWCVPHPKKPGHIL 87
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} Length = 195 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.0 bits (84), Expect = 0.004
Identities = 12/43 (27%), Positives = 18/43 (41%)
Query: 183 GEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK 225
G + L G SG+GKTT+ L L+ + D+
Sbjct: 19 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQG 61
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 746 | |||
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.83 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.62 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.39 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 99.11 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.94 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 98.86 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 97.9 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 97.7 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 97.64 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 97.02 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 97.01 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 96.99 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 96.84 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 96.78 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 96.68 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 96.51 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.46 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 96.44 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 96.38 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 96.37 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 96.31 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 96.23 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 96.15 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 96.09 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 95.95 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 95.91 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 95.85 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 95.75 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 95.73 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 95.73 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 95.71 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 95.69 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 95.67 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 95.66 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 95.63 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 95.63 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 95.61 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 95.61 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 95.58 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 95.56 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 95.53 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 95.51 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 95.49 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 95.39 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 95.33 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 95.29 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 95.19 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 95.16 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 95.15 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 95.13 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 95.1 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 95.09 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 95.08 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 95.08 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 95.07 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 95.02 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 94.97 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 94.96 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 94.95 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 94.91 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 94.9 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 94.85 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 94.82 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 94.69 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 94.67 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 94.67 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 94.66 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 94.63 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 94.6 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 94.58 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 94.56 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 94.55 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 94.52 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 94.52 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 94.48 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 94.46 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 94.42 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 94.4 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 94.37 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 94.33 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 94.29 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 94.25 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 94.23 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 94.23 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 94.22 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 94.15 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 94.12 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 94.12 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.1 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 94.09 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 94.05 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 93.99 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 93.93 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 93.87 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 93.82 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 93.82 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 93.75 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 93.73 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 93.7 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 93.65 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 93.65 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 93.64 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 93.62 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 93.56 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 93.49 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 93.46 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 93.41 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 93.29 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 93.18 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 93.15 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 93.05 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 93.05 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 93.04 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 93.03 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 92.99 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 92.93 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 92.9 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 92.85 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 92.74 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 92.54 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 92.5 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 92.45 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 92.43 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 92.35 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 92.23 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 92.03 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 92.0 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 91.95 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 91.92 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 91.88 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 91.85 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 91.85 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 91.81 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 91.81 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 91.77 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 91.76 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 91.67 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 91.63 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 91.55 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 91.52 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 91.5 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 91.33 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 91.28 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 91.24 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 91.05 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 91.01 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 91.0 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 90.92 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 90.92 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 90.91 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 90.86 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 90.84 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 90.77 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 90.71 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 90.56 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 90.48 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 90.46 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 90.42 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 90.25 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 90.19 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 90.19 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 90.07 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 90.03 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 90.01 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 89.95 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 89.89 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 89.67 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 89.58 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 89.57 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 89.53 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 89.49 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 89.36 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 89.35 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 89.16 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 89.12 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 89.09 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 89.07 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 88.99 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 88.98 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 88.88 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 88.82 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 88.75 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 88.56 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 88.54 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 88.51 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 88.49 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 88.45 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 88.43 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 88.39 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 88.38 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 88.17 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 88.07 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 87.95 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 87.92 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 87.57 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 87.44 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 87.43 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 86.92 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 86.87 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 86.69 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 86.64 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 86.5 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 86.32 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 85.97 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 85.61 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 85.2 | |
| d2olra1 | 313 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 85.17 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 84.73 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 84.58 | |
| d1j3ba1 | 318 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 83.75 | |
| d1e2ka_ | 329 | Thymidine kinase {Herpes simplex virus type 1, dif | 83.65 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 83.03 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 82.7 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 82.66 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 82.31 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 82.28 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 82.26 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 82.0 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 82.0 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 81.75 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 81.66 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 81.23 | |
| d1ii2a1 | 323 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 80.81 | |
| d1n0ua2 | 341 | Elongation factor 2 (eEF-2), N-terminal (G) domain | 80.42 |
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=0 Score=370.59 Aligned_cols=218 Identities=29% Similarity=0.505 Sum_probs=196.5
Q ss_pred EEEEEEEEEEEEECCCCCCCCCCCEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEEECCEECCH---
Q ss_conf 08999489999622566644454002127999488099998799862899999997399999974189998870792---
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (746)
Q Consensus 149 ~i~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~L~gr~~~~~~~G~I~~~G~~~~~--- 225 (746)
.|+++||+++| ++..+|+|||+++++||+++|+||||||||||+++|+|. ..| .+|+|.++|+++..
T Consensus 3 ~i~v~nl~k~y--------g~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl-~~p-~sG~I~~~g~~i~~~~~ 72 (240)
T d1g2912 3 GVRLVDVWKVF--------GEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGL-EEP-SRGQIYIGDKLVADPEK 72 (240)
T ss_dssp EEEEEEEEEEE--------TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTS-SCC-SEEEEEETTEEEEEGGG
T ss_pred CEEEEEEEEEE--------CCEEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCC-CCC-CCCEEEECCEEECCCCH
T ss_conf 18998699998--------999998560668869989999999998099999999648-788-98989999998035664
Q ss_pred -----HCCCCEEEEECCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf -----102738999038867999999999999874069987769999999999998839974222223585566789889
Q 004537 226 -----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGE 300 (746)
Q Consensus 226 -----~~~~~i~yV~Q~d~l~~~lTV~E~l~f~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~ig~~~~~~LSGGq 300 (746)
..++.+|||+|++.+++.+||+||+.|+...+ ..++++.+++++++++.++|++..+.. ++.|||||
T Consensus 73 ~~~~~~~~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~---~~~~~e~~~~v~~~l~~~~l~~~~~~~-----p~~LSGGq 144 (240)
T d1g2912 73 GIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLR---KVPRQEIDQRVREVAELLGLTELLNRK-----PRELSGGQ 144 (240)
T ss_dssp TEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHHTCGGGTTCC-----GGGSCHHH
T ss_pred HHHCCCCCCCCEECCCCHHHCCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHCCCHHHHCCC-----HHHCCHHH
T ss_conf 4424532255120022122231011667633068772---999899999999999875996676299-----33499999
Q ss_pred HHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHCCCEEEEEECCEEEEECC
Q ss_conf 89999999996399789994999999999999999999999978-97799995688908885067799970976999529
Q 004537 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (746)
Q Consensus 301 rqRvsIA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~Tii~~~Hq~s~~i~~~~D~i~lL~~G~iv~~G~ 379 (746)
|||++|||+|+.+|++|+|||||+|||+.+..++.+.|+++.++ |.|+|+++|++ .++...||+|++|++|++++.|+
T Consensus 145 kQRv~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~-~~~~~~~drv~vm~~G~iv~~G~ 223 (240)
T d1g2912 145 RQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQ-VEAMTMGDRIAVMNRGVLQQVGS 223 (240)
T ss_dssp HHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEEC
T ss_pred HHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCH-HHHHHHCCEEEEEECCEEEEECC
T ss_conf 99999999982699889825887656989998999999999863698899995999-99999699999998999999859
Q ss_pred HHHHHH
Q ss_conf 778999
Q 004537 380 ASEAMA 385 (746)
Q Consensus 380 ~~~~~~ 385 (746)
++|++.
T Consensus 224 ~~el~~ 229 (240)
T d1g2912 224 PDEVYD 229 (240)
T ss_dssp HHHHHH
T ss_pred HHHHHH
T ss_conf 999982
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=0 Score=374.30 Aligned_cols=218 Identities=27% Similarity=0.484 Sum_probs=197.3
Q ss_pred EEEEEEEEEEEEECCCCCCCCCCCEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEEECCEECCH--H
Q ss_conf 08999489999622566644454002127999488099998799862899999997399999974189998870792--1
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--S 226 (746)
Q Consensus 149 ~i~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~L~gr~~~~~~~G~I~~~G~~~~~--~ 226 (746)
.|+++|++++| +++.+|+|||+++++||+++|+||||||||||+++|+|. ..| .+|+|.+||+++.. .
T Consensus 6 ~I~v~nlsk~y--------g~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl-~~p-~sG~I~i~g~~i~~~~~ 75 (239)
T d1v43a3 6 EVKLENLTKRF--------GNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGL-EEP-TEGRIYFGDRDVTYLPP 75 (239)
T ss_dssp CEEEEEEEEEE--------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTS-SCC-SEEEEEETTEECTTSCG
T ss_pred EEEEEEEEEEE--------CCEEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCC-CCC-CCCEEEECCEECCCCCC
T ss_conf 49998799999--------999998130678879989999999998299999999758-999-87879991641354770
Q ss_pred CCCCEEEEECCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 02738999038867999999999999874069987769999999999998839974222223585566789889899999
Q 004537 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (746)
Q Consensus 227 ~~~~i~yV~Q~d~l~~~lTV~E~l~f~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~ig~~~~~~LSGGqrqRvsI 306 (746)
.++.+|||+|++.+|+++||+||+.|++..+ ..++++.+++++++++.++|++..|.. +..||||||||++|
T Consensus 76 ~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSGGq~QRvai 147 (239)
T d1v43a3 76 KDRNISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLNRY-----PAQLSGGQRQRVAV 147 (239)
T ss_dssp GGGTEEEEEC------CCCHHHHHHTTCC-----CCCHHHHHHHHHHHHHHTTCGGGTTSC-----TTTCCSSCHHHHHH
T ss_pred CCCEEEEEEECHHHCCCCHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHCCCHHHHCCC-----HHHCCHHHHHHHHH
T ss_conf 0015899800335342220999999999873---999999999999999875985566099-----54699999889999
Q ss_pred HHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHCCCEEEEEECCEEEEECCHHHHHH
Q ss_conf 99996399789994999999999999999999999978-97799995688908885067799970976999529778999
Q 004537 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (746)
Q Consensus 307 A~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~Tii~~~Hq~s~~i~~~~D~i~lL~~G~iv~~G~~~~~~~ 385 (746)
||+|+.+|++|+|||||+|||+.++.++.+.++++.++ |.|+|+++|++ .++.++||+|++|++|++++.|+++++.+
T Consensus 148 AraL~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~-~~a~~~~dri~vm~~G~iv~~G~~~el~~ 226 (239)
T d1v43a3 148 ARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQ-VEAMTMGDRIAVMNRGQLLQIGSPTEVYL 226 (239)
T ss_dssp HHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCH-HHHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 76640499824306886668989998999999999873198079994899-99998699999998999999859999986
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=0 Score=371.52 Aligned_cols=220 Identities=27% Similarity=0.483 Sum_probs=196.2
Q ss_pred EEEEEEEEEEEEECCCCCCCCCCCEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEEECCEECCH---
Q ss_conf 08999489999622566644454002127999488099998799862899999997399999974189998870792---
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (746)
Q Consensus 149 ~i~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~L~gr~~~~~~~G~I~~~G~~~~~--- 225 (746)
.|+++||+++|. +++..+|+|||+++++||+++|+||||||||||+++|+| +..| .+|+|.++|+++..
T Consensus 3 ~i~v~nlsk~y~------~g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~g-l~~p-~~G~I~~~g~~i~~~~~ 74 (242)
T d1oxxk2 3 RIIVKNVSKVFK------KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAG-LDVP-STGELYFDDRLVASNGK 74 (242)
T ss_dssp CEEEEEEEEEEG------GGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHT-SSCC-SEEEEEETTEEEEETTE
T ss_pred EEEEEEEEEEEC------CCCEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHC-CCCC-CCCEEEECCEEEECCCH
T ss_conf 899975799988------999899804078987998999998999809999999975-8688-87459999999513731
Q ss_pred ----HCCCCEEEEECCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf ----1027389990388679999999999998740699877699999999999988399742222235855667898898
Q 004537 226 ----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301 (746)
Q Consensus 226 ----~~~~~i~yV~Q~d~l~~~lTV~E~l~f~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~ig~~~~~~LSGGqr 301 (746)
..++++|||+|++.+||++||+||+.|++..+ ..++++.+++++++++.+||++..|..+ ..||||||
T Consensus 75 ~~~~~~rr~ig~vfQ~~~L~p~ltv~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~~~p-----~~LSGGqk 146 (242)
T d1oxxk2 75 LIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAKILDIHHVLNHFP-----RELSGAQQ 146 (242)
T ss_dssp ESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTS---SCCHHHHHHHHHHHHHHTTCGGGTTSCG-----GGSCHHHH
T ss_pred HHCCHHHCCCEEEECCCCCCCCCCHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHCCHHHHHHCCH-----HHCCHHHH
T ss_conf 115312045147730433466665777766556761---3799999999999986659176664895-----45999998
Q ss_pred HHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHCCCEEEEEECCEEEEECCH
Q ss_conf 9999999996399789994999999999999999999999978-977999956889088850677999709769995297
Q 004537 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380 (746)
Q Consensus 302 qRvsIA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~Tii~~~Hq~s~~i~~~~D~i~lL~~G~iv~~G~~ 380 (746)
||++|||+|+.+|++|++||||+|||+.+..++++.++++.++ |.|+|+++|++ .++.+.||+|++|++|++++.|++
T Consensus 147 QRvaiARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~-~~~~~~~dri~vm~~G~iv~~g~~ 225 (242)
T d1oxxk2 147 QRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDP-ADIFAIADRVGVLVKGKLVQVGKP 225 (242)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECH
T ss_pred HHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCH-HHHHHHCCEEEEEECCEEEEECCH
T ss_conf 5899875776046614544786679989988998999999863598799997999-999996999999989999998699
Q ss_pred HHHHH
Q ss_conf 78999
Q 004537 381 SEAMA 385 (746)
Q Consensus 381 ~~~~~ 385 (746)
+++..
T Consensus 226 ~el~~ 230 (242)
T d1oxxk2 226 EDLYD 230 (242)
T ss_dssp HHHHH
T ss_pred HHHHH
T ss_conf 99986
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=376.00 Aligned_cols=217 Identities=28% Similarity=0.482 Sum_probs=195.4
Q ss_pred EEEEEEEEEEEECCCCCCCCCCCEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEEECCEECCH--HC
Q ss_conf 8999489999622566644454002127999488099998799862899999997399999974189998870792--10
Q 004537 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SL 227 (746)
Q Consensus 150 i~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~L~gr~~~~~~~G~I~~~G~~~~~--~~ 227 (746)
|+++||+++| +++.+|+|||+++++||+++|+||||||||||+++|+|. ..| .+|+|.+||+++.+ ..
T Consensus 1 Iev~nv~k~y--------g~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl-~~p-~sG~I~i~g~~i~~~~~~ 70 (232)
T d2awna2 1 VQLQNVTKAW--------GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGL-ETI-TSGDLFIGEKRMNDTPPA 70 (232)
T ss_dssp EEEEEEEEEE--------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTS-SCC-SEEEEEESSSCCTTSCGG
T ss_pred CEEEEEEEEE--------CCEEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCC-CCC-CCCEEEECCEECCCCCHH
T ss_conf 9999999998--------999998111778869989999989998299999999658-788-888899999977888644
Q ss_pred CCCEEEEECCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 27389990388679999999999998740699877699999999999988399742222235855667898898999999
Q 004537 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (746)
Q Consensus 228 ~~~i~yV~Q~d~l~~~lTV~E~l~f~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~ig~~~~~~LSGGqrqRvsIA 307 (746)
++.+|||+|++.+++.+||+||+.|+...+ ..++++.+++++++++.++|++..+..+ +.||||||||++||
T Consensus 71 ~r~ig~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~l~~~~~~~~-----~~LSGGqkQRvaiA 142 (232)
T d2awna2 71 ERGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEVINQRVNQVAEVLQLAHLLDRKP-----KALSGGQRQRVAIG 142 (232)
T ss_dssp GTCEEEECSSCCC------------------------CHHHHHHHHHHHHC--------------------------CHH
T ss_pred HCEEEEECCCCCCCCCHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHCCCHHHHHCCH-----HHCCHHHHHHHHHH
T ss_conf 432223433420264333788978999875---9988999999999997578865664896-----56999999999999
Q ss_pred HHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEECCCCHHHHHCCCEEEEEECCEEEEECCHHHHHH
Q ss_conf 999639978999499999999999999999999997-897799995688908885067799970976999529778999
Q 004537 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (746)
Q Consensus 308 ~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~-~g~Tii~~~Hq~s~~i~~~~D~i~lL~~G~iv~~G~~~~~~~ 385 (746)
|+|+.+|++|+|||||+|||+.++.++++.|+++.+ .|+|+|+++|++ .++..++|+|++|++|++++.|+++++++
T Consensus 143 raL~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~-~~a~~~~dri~vm~~G~iv~~G~~~el~~ 220 (232)
T d2awna2 143 RTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQ-VEAMTLADKIVVLDAGRVAQVGKPLELYH 220 (232)
T ss_dssp HHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCH-HHHHHHCCEEEEEECCEEEEEECHHHHHH
T ss_conf 9970399889975888788988998999999999874298799994899-99999699999997999999808999973
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=373.44 Aligned_cols=222 Identities=29% Similarity=0.507 Sum_probs=183.1
Q ss_pred EEEEEEEEEEEEECCCCCCCCCCCEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEEECCEECCH---
Q ss_conf 08999489999622566644454002127999488099998799862899999997399999974189998870792---
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (746)
Q Consensus 149 ~i~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~L~gr~~~~~~~G~I~~~G~~~~~--- 225 (746)
.|+|+||+|+|. ...+.+|+|||+++++||.+||+||||||||||+++|+| ++.| .+|+|.+||+++..
T Consensus 1 eI~~~nvsf~Y~------~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~g-l~~p-~~G~I~i~g~~i~~~~~ 72 (241)
T d2pmka1 1 DITFRNIRFRYK------PDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQR-FYIP-ENGQVLIDGHDLALADP 72 (241)
T ss_dssp EEEEEEEEEESS------TTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTT-SSCC-SEEEEEETTEETTTSCH
T ss_pred CEEEEEEEEEEC------CCCCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHH-CCCC-CCCEEEECCEEECCCCH
T ss_conf 929999999908------999603742489984999999999999989999999973-5788-88899999999440024
Q ss_pred -HCCCCEEEEECCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf -1027389990388679999999999998740699877699999999999988399742222235855667898898999
Q 004537 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (746)
Q Consensus 226 -~~~~~i~yV~Q~d~l~~~lTV~E~l~f~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~ig~~~~~~LSGGqrqRv 304 (746)
.++++++||+|++.+|+ .||+||+.++......+.+....+.....+.+. .++...++.++.. ...||||||||+
T Consensus 73 ~~lr~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~i~--~~~~~~~t~i~~~-g~~LSGGq~QRv 148 (241)
T d2pmka1 73 NWLRRQVGVVLQDNVLLN-RSIIDNISLANPGMSVEKVIYAAKLAGAHDFIS--ELREGYNTIVGEQ-GAGLSGGQRQRI 148 (241)
T ss_dssp HHHHHHEEEECSSCCCTT-SBHHHHHCTTSTTCCHHHHHHHHHHHTCHHHHT--TSTTGGGSBCSTT-TTCCCHHHHHHH
T ss_pred HHHHCEEEEEECCCCCCC-CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH--HHHCCHHHHCCCC-CCCCCHHHHHHH
T ss_conf 655352889824465578-400035223575543888999999975578887--6320134432787-886698898987
Q ss_pred HHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHCCCEEEEEECCEEEEECCHHHHH
Q ss_conf 99999963997899949999999999999999999999789779999568890888506779997097699952977899
Q 004537 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (746)
Q Consensus 305 sIA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~Tii~~~Hq~s~~i~~~~D~i~lL~~G~iv~~G~~~~~~ 384 (746)
+|||+|+.+|+||+||||||+||+.++..|++.|+++.+ ++|+|+++|+++. ...||+|++|++|++++.|++++++
T Consensus 149 alARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~~--~~~~D~i~vl~~G~Iv~~G~~~ell 225 (241)
T d2pmka1 149 AIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK-GRTVIIIAHRLST--VKNADRIIVMEKGKIVEQGKHKELL 225 (241)
T ss_dssp HHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHT-TSEEEEECSSGGG--GTTSSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHHCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHC-CCEEEEEECCHHH--HHHCCEEEEEECCEEEEECCHHHHH
T ss_conf 544344416513556477655598999999999999858-9989999788999--9849999999899999988999998
Q ss_pred H
Q ss_conf 9
Q 004537 385 A 385 (746)
Q Consensus 385 ~ 385 (746)
+
T Consensus 226 ~ 226 (241)
T d2pmka1 226 S 226 (241)
T ss_dssp H
T ss_pred H
T ss_conf 2
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=368.55 Aligned_cols=221 Identities=25% Similarity=0.418 Sum_probs=194.7
Q ss_pred EEEEEEEEEEEEECCCCCCCCCCCEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEEECCEECCH---
Q ss_conf 08999489999622566644454002127999488099998799862899999997399999974189998870792---
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (746)
Q Consensus 149 ~i~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~L~gr~~~~~~~G~I~~~G~~~~~--- 225 (746)
.|+++||+++|..+ ....++|+|||+++++||+++|+||||||||||+++|+|. ..| .+|+|.++|+++..
T Consensus 1 mi~v~nlsk~y~~~----~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl-~~p-~sG~I~~~g~~i~~~~~ 74 (240)
T d3dhwc1 1 MIKLSNITKVFHQG----TRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLL-ERP-TEGSVLVDGQELTTLSE 74 (240)
T ss_dssp CEEEEEEEEEEECS----SCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTS-SCC-SEEEEEETTEEECTTCH
T ss_pred CEEEEEEEEEECCC----CEEEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHCCC-CCC-CCCCEEECCEEEEECCH
T ss_conf 97998279996999----8148986150578869979999899989888999987588-636-67732886768520875
Q ss_pred ----HCCCCEEEEECCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf ----1027389990388679999999999998740699877699999999999988399742222235855667898898
Q 004537 226 ----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301 (746)
Q Consensus 226 ----~~~~~i~yV~Q~d~l~~~lTV~E~l~f~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~ig~~~~~~LSGGqr 301 (746)
.+|+++|||+|++.+++.+||+||+.|+...+ ..++++.+++++++++.+||++..+.. ++.||||||
T Consensus 75 ~~~~~~rr~ig~VfQ~~~l~~~~tv~eni~~~l~~~---~~~~~~~~~~v~~~L~~vgL~~~~~~~-----~~~LSGG~~ 146 (240)
T d3dhwc1 75 SELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEVKRRVTELLSLVGLGDKHDSY-----PSNLSGGQK 146 (240)
T ss_dssp HHHHHHHHHEEECCSSCCCCTTSBHHHHHHHHHHTT---TCCTTHHHHHHHHHHHHHSTTTTTSSC-----BSCCCHHHH
T ss_pred HHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHCCCCHHHHCC-----HHHCCHHHH
T ss_conf 551155416643022522279964999999999984---999899999999999976990355489-----434999999
Q ss_pred HHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHCCCEEEEEECCEEEEECCH
Q ss_conf 9999999996399789994999999999999999999999978-977999956889088850677999709769995297
Q 004537 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380 (746)
Q Consensus 302 qRvsIA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~Tii~~~Hq~s~~i~~~~D~i~lL~~G~iv~~G~~ 380 (746)
|||+|||+|+.+|++|++||||+|||+.++.+|++.|+++.++ |.|+|+++|++ .++...||+|++|++|++++.|++
T Consensus 147 QRvaiAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl-~~~~~~~dri~vl~~G~iv~~G~~ 225 (240)
T d3dhwc1 147 QRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEM-DVVKRICDCVAVISNGELIEQDTV 225 (240)
T ss_dssp HHHHHHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCH-HHHHHHCSEEEEEETTEEEEEEET
T ss_pred HHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCH-HHHHHHCCEEEEEECCEEEEECCH
T ss_conf 8999864010589868744655658988856799999999864697899983899-999986999999979999998799
Q ss_pred HHHH
Q ss_conf 7899
Q 004537 381 SEAM 384 (746)
Q Consensus 381 ~~~~ 384 (746)
++++
T Consensus 226 ~ei~ 229 (240)
T d3dhwc1 226 SEVF 229 (240)
T ss_dssp TTTT
T ss_pred HHHH
T ss_conf 9997
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=0 Score=362.24 Aligned_cols=219 Identities=30% Similarity=0.485 Sum_probs=190.3
Q ss_pred EEEEEEEEEEEEECCCCCCCCCCCEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEEECCEECCH---
Q ss_conf 08999489999622566644454002127999488099998799862899999997399999974189998870792---
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (746)
Q Consensus 149 ~i~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~L~gr~~~~~~~G~I~~~G~~~~~--- 225 (746)
.|+++||+++|..+ .....+|+|||+++++||+++|+||||||||||+++|+|. ..| .+|+|.++|+++..
T Consensus 1 mI~i~nlsk~y~~~----~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl-~~p-~sG~I~~~g~~i~~~~~ 74 (230)
T d1l2ta_ 1 MIKLKNVTKTYKMG----EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCL-DKP-TEGEVYIDNIKTNDLDD 74 (230)
T ss_dssp CEEEEEEEEEEEET----TEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTS-SCC-SEEEEEETTEECTTCCH
T ss_pred CEEEEEEEEEECCC----CEEEEEEECEEEEECCCCEEEEECCCCCCCCHHHHHCCCC-CCC-CCCEEEECCEECCCCCH
T ss_conf 98999079994899----8208987133778849979999889999821655750688-777-76626999998576885
Q ss_pred -H---C-CCCEEEEECCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCC-CCCCCCCCCCCCCCCHH
Q ss_conf -1---0-2738999038867999999999999874069987769999999999998839974-22222358556678988
Q 004537 226 -S---L-KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVRGVSGG 299 (746)
Q Consensus 226 -~---~-~~~i~yV~Q~d~l~~~lTV~E~l~f~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~t~ig~~~~~~LSGG 299 (746)
. + ++++|||+|++.+++.+||+||+.++...+.....+.+++.+++.+.++.++|++ ..+. .+..||||
T Consensus 75 ~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~-----~p~~LSGG 149 (230)
T d1l2ta_ 75 DELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANH-----KPNQLSGG 149 (230)
T ss_dssp HHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTC-----CGGGSCHH
T ss_pred HHCCHHHCCEEEEEECCHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCHHHHHHCC-----CHHHCCHH
T ss_conf 5512312555778804124176866888775788872247899999999999988762423455348-----80238999
Q ss_pred HHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHCCCEEEEEECCEEEEEC
Q ss_conf 989999999996399789994999999999999999999999978-9779999568890888506779997097699952
Q 004537 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (746)
Q Consensus 300 qrqRvsIA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~Tii~~~Hq~s~~i~~~~D~i~lL~~G~iv~~G 378 (746)
|||||+|||||+.+|++|++||||++||+.++.++++.|+++.++ |+|+|+++|++. . .+.||+|++|++|++++.|
T Consensus 150 qkQRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~-~-a~~~drv~~m~~G~Iv~~g 227 (230)
T d1l2ta_ 150 QQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN-V-ARFGERIIYLKDGEVEREE 227 (230)
T ss_dssp HHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHH-H-HTTSSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCHH-H-HHHCCEEEEEECCEEEEEC
T ss_conf 9999998756522788899468765469899999999999999843999999878889-9-9869989999899999952
Q ss_pred CH
Q ss_conf 97
Q 004537 379 KA 380 (746)
Q Consensus 379 ~~ 380 (746)
+.
T Consensus 228 ~~ 229 (230)
T d1l2ta_ 228 KL 229 (230)
T ss_dssp EC
T ss_pred CC
T ss_conf 57
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=0 Score=361.56 Aligned_cols=214 Identities=29% Similarity=0.491 Sum_probs=189.4
Q ss_pred EEEEEEEEEEEEECCCCCCCCCCCEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEEECCEECCH--H
Q ss_conf 08999489999622566644454002127999488099998799862899999997399999974189998870792--1
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--S 226 (746)
Q Consensus 149 ~i~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~L~gr~~~~~~~G~I~~~G~~~~~--~ 226 (746)
.|+++|++++| ++ .+|+|||+++++||+++|+||||||||||+++|+|. ..| .+|+|.++|+++.+ .
T Consensus 1 mi~v~nlsk~y--------~~-~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl-~~p-~sG~I~~~G~~i~~~~~ 69 (229)
T d3d31a2 1 MIEIESLSRKW--------KN-FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGF-HVP-DSGRILLDGKDVTDLSP 69 (229)
T ss_dssp CEEEEEEEEEC--------SS-CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTS-SCC-SEEEEEETTEECTTSCH
T ss_pred CEEEEEEEEEE--------CC-EEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCC-CCC-CCCEEEECCEECCCCCH
T ss_conf 98999899994--------99-788433789879989999989998299999999647-688-87889995673465216
Q ss_pred CCCCEEEEECCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 02738999038867999999999999874069987769999999999998839974222223585566789889899999
Q 004537 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (746)
Q Consensus 227 ~~~~i~yV~Q~d~l~~~lTV~E~l~f~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~ig~~~~~~LSGGqrqRvsI 306 (746)
.++.+|||+|++.+|+++||+||+.|+...+.. .. .++++++++.++|.+..|..+ ..||||||||++|
T Consensus 70 ~~r~ig~v~Q~~~l~~~~tV~enl~~~~~~~~~---~~---~~~~~~~l~~~~l~~~~~~~~-----~~LSGG~~QRvai 138 (229)
T d3d31a2 70 EKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKI---KD---PKRVLDTARDLKIEHLLDRNP-----LTLSGGEQQRVAL 138 (229)
T ss_dssp HHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCC---CC---HHHHHHHHHHTTCTTTTTSCG-----GGSCHHHHHHHHH
T ss_pred HHHCCEEECCCCCCCCCCCHHHHHHHHHHHCCC---CH---HHHHHHHHHHHCCHHHHHCCH-----HHCCHHHHCCHHH
T ss_conf 574056151211117466577888887764055---38---999999999825655575895-----5479998401403
Q ss_pred HHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEECCCCHHHHHCCCEEEEEECCEEEEECCHHHHHH
Q ss_conf 9999639978999499999999999999999999997-897799995688908885067799970976999529778999
Q 004537 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (746)
Q Consensus 307 A~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~-~g~Tii~~~Hq~s~~i~~~~D~i~lL~~G~iv~~G~~~~~~~ 385 (746)
||+|+.+|++|+|||||+|||+.+..++.+.++++.+ .|.|+|+++|++ .++.+.+|+|++|++|++++.|+++++++
T Consensus 139 AraL~~~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~-~~~~~~~drv~vm~~G~iv~~g~~~el~~ 217 (229)
T d3d31a2 139 ARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQ-TEARIMADRIAVVMDGKLIQVGKPEEIFE 217 (229)
T ss_dssp HHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCH-HHHHHHCSEEEEESSSCEEEEECHHHHHS
T ss_pred HHHHHCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCH-HHHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 04344367714434787679989999999999999864796899974999-99999699999997999999869999986
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=0 Score=368.20 Aligned_cols=218 Identities=32% Similarity=0.498 Sum_probs=184.3
Q ss_pred CEEEEEEEEEEEEECCCCCCCCCCCEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEEECCEECCH--
Q ss_conf 108999489999622566644454002127999488099998799862899999997399999974189998870792--
Q 004537 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (746)
Q Consensus 148 ~~i~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~L~gr~~~~~~~G~I~~~G~~~~~-- 225 (746)
..|+|+||+|+|. ...+++|+|||+++++|+.+||+||||||||||+++|+| ++.|. +|+|.+||.++..
T Consensus 15 g~I~~~nvsf~Y~------~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g-l~~p~-~G~I~i~g~~i~~~~ 86 (255)
T d2hyda1 15 GRIDIDHVSFQYN------DNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPR-FYDVT-SGQILIDGHNIKDFL 86 (255)
T ss_dssp CCEEEEEEEECSC------SSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTT-SSCCS-EEEEEETTEEGGGSC
T ss_pred CEEEEEEEEEEEC------CCCCCCEECEEEEECCCCEEEEECCCCCCHHHHHHHHHH-CCCCC-CCCCCCCCEECCCCC
T ss_conf 8799998899959------999760644389983998999988999809999999971-27863-000153998753078
Q ss_pred --HCCCCEEEEECCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHH-----HHHHHHHHCCCCCCCCCCCCCCCCCCCCH
Q ss_conf --10273899903886799999999999987406998776999999-----99999988399742222235855667898
Q 004537 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEK-----RAIDVINELGLERCQDTMIGGSFVRGVSG 298 (746)
Q Consensus 226 --~~~~~i~yV~Q~d~l~~~lTV~E~l~f~a~~~~~~~~~~~~~~~-----~v~~~l~~lgL~~~~~t~ig~~~~~~LSG 298 (746)
.++++++||+|++.+|+ .||+||+.++.. ..+.++..+ ...+.+. .|++..++.++.. ...|||
T Consensus 87 ~~~lr~~i~~v~Q~~~lf~-~Ti~eNi~~g~~-----~~~~~~~~~al~~~~l~~~i~--~lp~gl~t~i~~~-g~~LSg 157 (255)
T d2hyda1 87 TGSLRNQIGLVQQDNILFS-DTVKENILLGRP-----TATDEEVVEAAKMANAHDFIM--NLPQGYDTEVGER-GVKLSG 157 (255)
T ss_dssp HHHHHHTEEEECSSCCCCS-SBHHHHHGGGCS-----SCCHHHHHHHHHHTTCHHHHH--TSTTGGGCBCCGG-GTTSCH
T ss_pred HHHHHHEEEEEECCCCCCC-CCHHHHHHCCCC-----CCCHHHHHHHHHHHCCHHHHH--HCCCCCCCHHCCC-CCCCCH
T ss_conf 8886341456510156899-879999851586-----799999999999969799997--3624201033388-898499
Q ss_pred HHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHCCCEEEEEECCEEEEEC
Q ss_conf 89899999999963997899949999999999999999999999789779999568890888506779997097699952
Q 004537 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (746)
Q Consensus 299 GqrqRvsIA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~Tii~~~Hq~s~~i~~~~D~i~lL~~G~iv~~G 378 (746)
|||||++|||+|+.+|+|++||||||+||+.++..|++.|+++.+ ++|+|+++|+++. ...||+|++|++|++++.|
T Consensus 158 Gq~QRi~iARal~~~p~ililDEpts~LD~~t~~~i~~~l~~l~~-~~TvI~itH~~~~--~~~~D~ii~l~~G~iv~~G 234 (255)
T d2hyda1 158 GQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSK-DRTTLIVAHRLST--ITHADKIVVIENGHIVETG 234 (255)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-TSEEEEECSSGGG--TTTCSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCEEEEEECCHHH--HHHCCEEEEEECCEEEEEC
T ss_conf 999999999998559989998376544797799999999998753-8889999689999--9859999999899999988
Q ss_pred CHHHHHH
Q ss_conf 9778999
Q 004537 379 KASEAMA 385 (746)
Q Consensus 379 ~~~~~~~ 385 (746)
+++|+++
T Consensus 235 ~~~eLl~ 241 (255)
T d2hyda1 235 THRELIA 241 (255)
T ss_dssp CHHHHHH
T ss_pred CHHHHHH
T ss_conf 9999986
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=367.60 Aligned_cols=224 Identities=29% Similarity=0.506 Sum_probs=184.8
Q ss_pred EEEEEEEEEEEEECCCCCCCCCCCEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEEECCEECCH---
Q ss_conf 08999489999622566644454002127999488099998799862899999997399999974189998870792---
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (746)
Q Consensus 149 ~i~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~L~gr~~~~~~~G~I~~~G~~~~~--- 225 (746)
.|+|+||+|+|+. ++++.+|+|||+++++||++||+||||||||||+++|+| ++.|. +|+|.+||+++..
T Consensus 11 ~I~~~nvsf~Y~~-----~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~g-l~~p~-~G~I~i~g~~i~~~~~ 83 (251)
T d1jj7a_ 11 LVQFQDVSFAYPN-----RPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQN-LYQPT-GGQLLLDGKPLPQYEH 83 (251)
T ss_dssp CEEEEEEEECCTT-----STTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTT-SSCCS-EEEEEETTEEGGGBCH
T ss_pred EEEEEEEEEECCC-----CCCCEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHC-CCCCC-CCEEEECCEECCHHHH
T ss_conf 6999998998899-----999976744389984998999999999849999999861-43787-6899889985311013
Q ss_pred -HCCCCEEEEECCCCCCCCCCHHHHHHHHHHCCCCC-CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf -10273899903886799999999999987406998-7769999999999998839974222223585566789889899
Q 004537 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPN-TLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (746)
Q Consensus 226 -~~~~~i~yV~Q~d~l~~~lTV~E~l~f~a~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~t~ig~~~~~~LSGGqrqR 303 (746)
.++++++||+|++.+|+ .||+||+.++....... ............+.++ .|++..++.++.. ...||||||||
T Consensus 84 ~~~r~~i~~v~Q~~~lf~-~tv~eni~~g~~~~~~~~~~~~~~~~~~~~~~i~--~l~~g~~~~i~~~-~~~LSGGqkQR 159 (251)
T d1jj7a_ 84 RYLHRQVAAVGQEPQVFG-RSLQENIAYGLTQKPTMEEITAAAVKSGAHSFIS--GLPQGYDTEVDEA-GSQLSGGQRQA 159 (251)
T ss_dssp HHHHHHEEEECSSCCCCS-SBHHHHHHCSCSSCCCHHHHHHHHHHHTCHHHHH--TSTTGGGCBCCSS-CSSSCHHHHHH
T ss_pred HHHHHHHHHCCCCCCCCC-CCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH--HCCCCCHHHHHCC-CCCCCHHHCEE
T ss_conf 788877654045650027-6346554542101302788999999998999998--5612111367516-76689547048
Q ss_pred HHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHCCCEEEEEECCEEEEECCHHH
Q ss_conf 99999996399789994999999999999999999999978-97799995688908885067799970976999529778
Q 004537 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (746)
Q Consensus 304 vsIA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~Tii~~~Hq~s~~i~~~~D~i~lL~~G~iv~~G~~~~ 382 (746)
++|||+|+.+|+|++||||||+||+.++.++++.|+++.++ ++|+|+++|+++ ..+.||+|++|++|++++.|+|+|
T Consensus 160 vaiARal~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~--~~~~aDrI~vl~~G~iv~~Gt~~e 237 (251)
T d1jj7a_ 160 VALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLS--LVEQADHILFLEGGAIREGGTHQQ 237 (251)
T ss_dssp HHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHH--HHHTCSEEEEEETTEEEEEECHHH
T ss_pred EEEEECCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH--HHHHCCEEEEEECCEEEEECCHHH
T ss_conf 998604456870787167576568536899999999976506989999959799--998599999998999999889999
Q ss_pred HHH
Q ss_conf 999
Q 004537 383 AMA 385 (746)
Q Consensus 383 ~~~ 385 (746)
+++
T Consensus 238 Ll~ 240 (251)
T d1jj7a_ 238 LME 240 (251)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 985
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=0 Score=362.28 Aligned_cols=218 Identities=30% Similarity=0.517 Sum_probs=184.6
Q ss_pred EEEEEEEEEEEEECCCCCCCCCCCEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEEECCEECCH---
Q ss_conf 08999489999622566644454002127999488099998799862899999997399999974189998870792---
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (746)
Q Consensus 149 ~i~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~L~gr~~~~~~~G~I~~~G~~~~~--- 225 (746)
.|+|+||+|+|. ..+.++|+|||+++++||.+||+||||||||||+++|+| ++.|. +|+|.+||.++..
T Consensus 13 ~I~~~nvsf~Y~------~~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~g-l~~p~-~G~I~i~g~~i~~~~~ 84 (253)
T d3b60a1 13 DLEFRNVTFTYP------GREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITR-FYDID-EGHILMDGHDLREYTL 84 (253)
T ss_dssp CEEEEEEEECSS------SSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTT-TTCCS-EEEEEETTEETTTBCH
T ss_pred EEEEEEEEEEEC------CCCCCEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHC-CCCCC-CCEEEECCCCCCHHHH
T ss_conf 799998899929------999763533289985999999999999859999999862-16888-4689878801211106
Q ss_pred -HCCCCEEEEECCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHH-----HHHHHHHHCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf -10273899903886799999999999987406998776999999-----999999883997422222358556678988
Q 004537 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEK-----RAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (746)
Q Consensus 226 -~~~~~i~yV~Q~d~l~~~lTV~E~l~f~a~~~~~~~~~~~~~~~-----~v~~~l~~lgL~~~~~t~ig~~~~~~LSGG 299 (746)
.++++++||+|++.+|+. |+++|+.++.. ...+.++..+ .+.+.++.+ ++..++.++.. ...||||
T Consensus 85 ~~~r~~i~~v~Q~~~l~~~-ti~~n~~~~~~----~~~~~~~i~~a~~~~~l~~~i~~l--~~gl~t~~~~~-~~~LSGG 156 (253)
T d3b60a1 85 ASLRNQVALVSQNVHLFND-TVANNIAYART----EEYSREQIEEAARMAYAMDFINKM--DNGLDTIIGEN-GVLLSGG 156 (253)
T ss_dssp HHHHHTEEEECSSCCCCSS-BHHHHHHTTTT----SCCCHHHHHHHHHTTTCHHHHHHS--TTGGGSBCCTT-SCSSCHH
T ss_pred HHHHHEEEEEEECCCCCCC-CHHHHHHHCCC----CCCCHHHHHHHHHHHHHHHHHHHC--CCCCHHHHCCC-CCCCCHH
T ss_conf 6542068799502544786-20243320572----208999999999998179999735--54410143488-8984999
Q ss_pred HHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHCCCEEEEEECCEEEEECC
Q ss_conf 98999999999639978999499999999999999999999997897799995688908885067799970976999529
Q 004537 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (746)
Q Consensus 300 qrqRvsIA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~Tii~~~Hq~s~~i~~~~D~i~lL~~G~iv~~G~ 379 (746)
||||++|||+|+.+|+||+||||||+||+.++..|++.|+++.+ ++|+|+++|+++. ...||+|++|++|++++.|+
T Consensus 157 qkQRvaiARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~~--~~~~D~v~vl~~G~Iv~~G~ 233 (253)
T d3b60a1 157 QRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLST--IEQADEIVVVEDGIIVERGT 233 (253)
T ss_dssp HHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT-TSEEEEECSCGGG--TTTCSEEEEEETTEEEEEEC
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCC-CCEEEEEECCHHH--HHHCCEEEEEECCEEEEECC
T ss_conf 99999999999549988995164445898899999999987522-7889999887999--98599999998999999889
Q ss_pred HHHHHH
Q ss_conf 778999
Q 004537 380 ASEAMA 385 (746)
Q Consensus 380 ~~~~~~ 385 (746)
++++++
T Consensus 234 ~~eLl~ 239 (253)
T d3b60a1 234 HSELLA 239 (253)
T ss_dssp HHHHHH
T ss_pred HHHHHH
T ss_conf 999986
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=0 Score=355.05 Aligned_cols=220 Identities=28% Similarity=0.497 Sum_probs=193.0
Q ss_pred EEEEEEEEEEEEECCCCCCCCCCCEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEEECCEECCH---
Q ss_conf 08999489999622566644454002127999488099998799862899999997399999974189998870792---
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (746)
Q Consensus 149 ~i~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~L~gr~~~~~~~G~I~~~G~~~~~--- 225 (746)
.|+.+|++++| ++..+|+|||+++++||+++|+||||||||||+++|+|. ..| .+|+|.++|+++..
T Consensus 2 ~Lev~nl~k~y--------g~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl-~~p-~~G~I~~~G~~i~~~~~ 71 (258)
T d1b0ua_ 2 KLHVIDLHKRY--------GGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFL-EKP-SEGAIIVNGQNINLVRD 71 (258)
T ss_dssp CEEEEEEEEEE--------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTS-SCC-SEEEEEETTEECCEEEC
T ss_pred EEEEEEEEEEE--------CCEEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCC-CCC-CCCCEEECCEEECCCCC
T ss_conf 69999789998--------999988150668869979999989998299999999747-667-89977999999336775
Q ss_pred --------------HCCCCEEEEECCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf --------------102738999038867999999999999874069987769999999999998839974222223585
Q 004537 226 --------------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGS 291 (746)
Q Consensus 226 --------------~~~~~i~yV~Q~d~l~~~lTV~E~l~f~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~ig~~ 291 (746)
..++++|||+|++.+++.+||.||+.++..... ..++.+..+++.++++.++|.+... +.
T Consensus 72 ~~~~~~~~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~----~~ 145 (258)
T d1b0ua_ 72 KDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL--GLSKHDARERALKYLAKVGIDERAQ----GK 145 (258)
T ss_dssp TTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTT--CCCHHHHHHHHHHHHHHTTCCHHHH----TS
T ss_pred CCHHCCCCCHHHHHHHHCCEEEEEECHHHCCCHHCCHHHHHHHHHHC--CCCHHHHHHHHHHHHHHCCCCHHHH----CC
T ss_conf 20000235176799974544899833231411010213656578762--9998999999999999829952443----06
Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHCCCEEEEEEC
Q ss_conf 56678988989999999996399789994999999999999999999999978977999956889088850677999709
Q 004537 292 FVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 371 (746)
Q Consensus 292 ~~~~LSGGqrqRvsIA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~Tii~~~Hq~s~~i~~~~D~i~lL~~ 371 (746)
.+..|||||+|||+|||+|+.+|++|++||||+|||+.+..+|++.|++++++|+|+|+++|++ .++..+||||++|++
T Consensus 146 ~p~~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl-~~~~~~adri~vm~~ 224 (258)
T d1b0ua_ 146 YPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEM-GFARHVSSHVIFLHQ 224 (258)
T ss_dssp CGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCH-HHHHHHCSEEEEEET
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCH-HHHHHHCCEEEEEEC
T ss_conf 8220567788898999998439987885245556887888899876554103688338994899-999986999999979
Q ss_pred CEEEEECCHHHHHH
Q ss_conf 76999529778999
Q 004537 372 GSLLYFGKASEAMA 385 (746)
Q Consensus 372 G~iv~~G~~~~~~~ 385 (746)
|++++.|++++++.
T Consensus 225 G~iv~~g~~~ev~~ 238 (258)
T d1b0ua_ 225 GKIEEEGDPEQVFG 238 (258)
T ss_dssp TEEEEEECHHHHHH
T ss_pred CEEEEECCHHHHHH
T ss_conf 99999849999983
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=0 Score=352.86 Aligned_cols=233 Identities=24% Similarity=0.410 Sum_probs=205.0
Q ss_pred EEEEEEEEEEEEECCCCCCCCCCCEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEEECCEECCH---
Q ss_conf 08999489999622566644454002127999488099998799862899999997399999974189998870792---
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (746)
Q Consensus 149 ~i~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~L~gr~~~~~~~G~I~~~G~~~~~--- 225 (746)
.|+.+|++++| +++++|+|+|+.+++||+++|+||||||||||+++|+|. ..| .+|+|.++|+++.+
T Consensus 2 aI~v~nl~k~y--------g~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~-~~p-~~G~i~i~G~~i~~~~~ 71 (238)
T d1vpla_ 2 AVVVKDLRKRI--------GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTL-IKP-SSGIVTVFGKNVVEEPH 71 (238)
T ss_dssp CEEEEEEEEEE--------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTS-SCC-SEEEEEETTEETTTCHH
T ss_pred CEEEEEEEEEE--------CCEEEECCCEEEECCCCEEEEECCCCCCHHHHHHHHHCC-CCC-CCCEEEECCEECCCCHH
T ss_conf 78999589999--------999998062568848979999999999999999999669-887-88879998672446839
Q ss_pred HCCCCEEEEECCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 10273899903886799999999999987406998776999999999999883997422222358556678988989999
Q 004537 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (746)
Q Consensus 226 ~~~~~i~yV~Q~d~l~~~lTV~E~l~f~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~ig~~~~~~LSGGqrqRvs 305 (746)
..++.++||+|++.+++.+|+.||+.|.+..+. .++.+..++++.+++.++|.+..+..+ +.||||||||++
T Consensus 72 ~~~~~i~~vpq~~~~~~~ltv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lSgG~~qrv~ 143 (238)
T d1vpla_ 72 EVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYA---SSSSEIEEMVERATEIAGLGEKIKDRV-----STYSKGMVRKLL 143 (238)
T ss_dssp HHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHCCGGGGGSBG-----GGCCHHHHHHHH
T ss_pred HHHHHEEEEEECCCCCCCCCHHHHHHHHHHHCC---CCHHHHHHHHHHHHHHCCCHHHHHHHH-----HHCCHHHHHHHH
T ss_conf 887218675001546878667788898998617---998999999999998679788885045-----337998989999
Q ss_pred HHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHCCCEEEEEECCEEEEECCHHHHHH
Q ss_conf 99999639978999499999999999999999999997897799995688908885067799970976999529778999
Q 004537 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (746)
Q Consensus 306 IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~Tii~~~Hq~s~~i~~~~D~i~lL~~G~iv~~G~~~~~~~ 385 (746)
||++|+.+|++|+|||||+|||+.++.++.+.+++++++|+|||+++|++ .++...||+|++|++|++++.|+++++.+
T Consensus 144 iA~al~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l-~~~~~~~drv~vl~~G~iv~~g~~~el~~ 222 (238)
T d1vpla_ 144 IARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNM-LEVEFLCDRIALIHNGTIVETGTVEELKE 222 (238)
T ss_dssp HHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCH-HHHTTTCSEEEEEETTEEEEEEEHHHHHH
T ss_pred HHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCH-HHHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 99998659998873379889798999999999999996599899995989-99999699999998999999928999986
Q ss_pred HHHHCCCCCCCCCCHHHHHHHHH
Q ss_conf 99853999999999589999841
Q 004537 386 YFSSIGCSPQIAMNPAEFLLDLA 408 (746)
Q Consensus 386 yF~~~G~~~p~~~npad~~l~~~ 408 (746)
.+. ..|-.+.+.+++
T Consensus 223 ~~~--------~~~~~~~f~~~~ 237 (238)
T d1vpla_ 223 RYK--------AQNIEEVFEEVV 237 (238)
T ss_dssp HTT--------CSSHHHHHHHHH
T ss_pred CCC--------CCHHHHHHHHHH
T ss_conf 528--------766999999853
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=0 Score=366.42 Aligned_cols=219 Identities=30% Similarity=0.494 Sum_probs=182.2
Q ss_pred EEEEEEEEEEEEECCCCCCCCCCCEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEEECCEECCH---
Q ss_conf 08999489999622566644454002127999488099998799862899999997399999974189998870792---
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (746)
Q Consensus 149 ~i~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~L~gr~~~~~~~G~I~~~G~~~~~--- 225 (746)
.|+++||+|+|. ..+.+|+|||+++++||++||+||||||||||+++|+| ++.|. +|+|.+||+++..
T Consensus 1 mle~knvsf~Y~-------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~g-l~~p~-~G~I~i~g~~i~~~~~ 71 (242)
T d1mv5a_ 1 MLSARHVDFAYD-------DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLER-FYQPT-AGEITIDGQPIDNISL 71 (242)
T ss_dssp CEEEEEEEECSS-------SSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTT-SSCCS-BSCEEETTEESTTTSC
T ss_pred CEEEEEEEEECC-------CCCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHH-HHCCC-CCEEEECCEEECCCCH
T ss_conf 979998899879-------99841422589985999999999999979999999999-60989-8779889988442467
Q ss_pred -HCCCCEEEEECCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH-H--HCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf -10273899903886799999999999987406998776999999999999-8--8399742222235855667898898
Q 004537 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVI-N--ELGLERCQDTMIGGSFVRGVSGGER 301 (746)
Q Consensus 226 -~~~~~i~yV~Q~d~l~~~lTV~E~l~f~a~~~~~~~~~~~~~~~~v~~~l-~--~lgL~~~~~t~ig~~~~~~LSGGqr 301 (746)
.++++++||+|++.+|+. ||+||+.++... ..+.....+..+... . ...+++..++.++.. ...||||||
T Consensus 72 ~~~r~~i~~v~Q~~~lf~~-ti~eNi~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-g~~LSGGqk 145 (242)
T d1mv5a_ 72 ENWRSQIGFVSQDSAIMAG-TIRENLTYGLEG----DYTDEDLWQVLDLAFARSFVENMPDQLNTEVGER-GVKISGGQR 145 (242)
T ss_dssp SCCTTTCCEECCSSCCCCE-EHHHHTTSCTTS----CSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTT-SBCCCHHHH
T ss_pred HHHHHHEEEECCCCCCCCC-CHHHHEECCCCC----CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC-CCCCCHHHH
T ss_conf 8887436797566545785-345430124455----5423567789999975554203742101523687-898799999
Q ss_pred HHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHCCCEEEEEECCEEEEECCHH
Q ss_conf 99999999963997899949999999999999999999999789779999568890888506779997097699952977
Q 004537 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 381 (746)
Q Consensus 302 qRvsIA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~Tii~~~Hq~s~~i~~~~D~i~lL~~G~iv~~G~~~ 381 (746)
||++|||||+.+|+||+||||||+||+.++..+++.|+++.+ |+|+|+++|++.. ...||+|++|++|++++.|+++
T Consensus 146 QRv~iARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~~--~~~~D~i~vl~~G~iv~~G~~~ 222 (242)
T d1mv5a_ 146 QRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMK-GRTTLVIAHRLST--IVDADKIYFIEKGQITGSGKHN 222 (242)
T ss_dssp HHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHHT-TSEEEEECCSHHH--HHHCSEEEEEETTEECCCSCHH
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCC-CCEEEEEECCHHH--HHHCCEEEEEECCEEEEECCHH
T ss_conf 999999998529989996588655698899999887888717-9989999787999--9849999999899999999999
Q ss_pred HHHH
Q ss_conf 8999
Q 004537 382 EAMA 385 (746)
Q Consensus 382 ~~~~ 385 (746)
|+++
T Consensus 223 eLl~ 226 (242)
T d1mv5a_ 223 ELVA 226 (242)
T ss_dssp HHHH
T ss_pred HHHH
T ss_conf 9986
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=0 Score=351.41 Aligned_cols=221 Identities=24% Similarity=0.401 Sum_probs=192.2
Q ss_pred EEEEEEEEEEEEECCCCCCCCCCCEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEEECCEECCH---
Q ss_conf 08999489999622566644454002127999488099998799862899999997399999974189998870792---
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (746)
Q Consensus 149 ~i~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~L~gr~~~~~~~G~I~~~G~~~~~--- 225 (746)
.|+.+||+.+| ++.++|+|||+++++||+++|+||||||||||+++|+|. ..| .+|+|.++|+++..
T Consensus 4 iL~v~nlsk~y--------g~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl-~~p-~~G~I~~~g~~i~~~~~ 73 (254)
T d1g6ha_ 4 ILRTENIVKYF--------GEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGF-LKA-DEGRVYFENKDITNKEP 73 (254)
T ss_dssp EEEEEEEEEEE--------TTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTS-SCC-SEEEEEETTEECTTCCH
T ss_pred EEEEEEEEEEE--------CCEEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCC-CCC-CCCEEEECCEECCCHHH
T ss_conf 69997789997--------996887121799889979999999998499999999779-768-87379999996640569
Q ss_pred -H-CCCCEEEEECCCCCCCCCCHHHHHHHHHHCCCC----------CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf -1-027389990388679999999999998740699----------8776999999999999883997422222358556
Q 004537 226 -S-LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLP----------NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFV 293 (746)
Q Consensus 226 -~-~~~~i~yV~Q~d~l~~~lTV~E~l~f~a~~~~~----------~~~~~~~~~~~v~~~l~~lgL~~~~~t~ig~~~~ 293 (746)
. .+..++|++|++.+++.+||+||+.++...+.. ....+++..+++.++++.+++.+..|..++
T Consensus 74 ~~~~~~gi~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---- 149 (254)
T d1g6ha_ 74 AELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAG---- 149 (254)
T ss_dssp HHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGG----
T ss_pred HHHHHHCCCCCCCCCCCCCCCEEEEEEEEHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHCCCCHH----
T ss_conf 9999833872577642478874232143013330345045665421353289999999999876196302059535----
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHCCCEEEEEECCE
Q ss_conf 67898898999999999639978999499999999999999999999997897799995688908885067799970976
Q 004537 294 RGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGS 373 (746)
Q Consensus 294 ~~LSGGqrqRvsIA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~Tii~~~Hq~s~~i~~~~D~i~lL~~G~ 373 (746)
.||||||||++|||+|+.+|++|+|||||+|||+.+..++.+.+++++++|+||++++|++. ++.+.||+|++|++|+
T Consensus 150 -~LSgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~-~~~~~~Drv~vm~~G~ 227 (254)
T d1g6ha_ 150 -ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLD-IVLNYIDHLYVMFNGQ 227 (254)
T ss_dssp -GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCS-TTGGGCSEEEEEETTE
T ss_pred -HCCCHHHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEECCE
T ss_conf -69918888999999997592723243976569999999999999999978998999947699-9998699999996998
Q ss_pred EEEECCHHHHHH
Q ss_conf 999529778999
Q 004537 374 LLYFGKASEAMA 385 (746)
Q Consensus 374 iv~~G~~~~~~~ 385 (746)
+++.|+++|+.+
T Consensus 228 iv~~g~~~e~~~ 239 (254)
T d1g6ha_ 228 IIAEGRGEEEIK 239 (254)
T ss_dssp EEEEEESHHHHH
T ss_pred EEEEECHHHHHH
T ss_conf 999966899865
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=0 Score=350.25 Aligned_cols=217 Identities=26% Similarity=0.411 Sum_probs=186.9
Q ss_pred CEEEEEEEEEEEEECCCCCCCCCCCEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEEECCEECCH--
Q ss_conf 108999489999622566644454002127999488099998799862899999997399999974189998870792--
Q 004537 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (746)
Q Consensus 148 ~~i~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~L~gr~~~~~~~G~I~~~G~~~~~-- 225 (746)
..|+.+|++++| +++.+|+|||+++++||+++|+||||||||||+++|+|. ..| .+|+|.++|+++..
T Consensus 5 ~~Lev~~l~k~y--------g~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl-~~p-~~G~I~~~G~~i~~~~ 74 (240)
T d1ji0a_ 5 IVLEVQSLHVYY--------GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGL-VRA-QKGKIIFNGQDITNKP 74 (240)
T ss_dssp EEEEEEEEEEEE--------TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTS-SCC-SEEEEEETTEECTTCC
T ss_pred EEEEEEEEEEEE--------CCEEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCC-CCC-CCCEEEECCCCCCCCC
T ss_conf 079996189998--------998888302578889979999999998599999999678-888-8038984244344660
Q ss_pred -H--CCCCEEEEECCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHC-CCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf -1--0273899903886799999999999987406998776999999999999883-99742222235855667898898
Q 004537 226 -S--LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL-GLERCQDTMIGGSFVRGVSGGER 301 (746)
Q Consensus 226 -~--~~~~i~yV~Q~d~l~~~lTV~E~l~f~a~~~~~~~~~~~~~~~~v~~~l~~l-gL~~~~~t~ig~~~~~~LSGGqr 301 (746)
. .+..++|++|+..+|+.+||+||+.+++..... ++..++.++++++.+ +|.+..+..+ ..||||||
T Consensus 75 ~~~~~r~gi~~~~q~~~l~~~ltv~en~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~LSGG~~ 145 (240)
T d1ji0a_ 75 AHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKD----KEGIKRDLEWIFSLFPRLKERLKQLG-----GTLSGGEQ 145 (240)
T ss_dssp HHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTCCC----SSHHHHHHHHHHHHCHHHHTTTTSBS-----SSSCHHHH
T ss_pred HHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC----HHHHHHHHHHHHHHHHCHHHHHHCCH-----HHCCHHHH
T ss_conf 8888874235567655457763699999988873278----88999999999987417688875854-----33899999
Q ss_pred HHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHCCCEEEEEECCEEEEECCHH
Q ss_conf 99999999963997899949999999999999999999999789779999568890888506779997097699952977
Q 004537 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 381 (746)
Q Consensus 302 qRvsIA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~Tii~~~Hq~s~~i~~~~D~i~lL~~G~iv~~G~~~ 381 (746)
||++|||+|+.+|++|+|||||+|||+.+..++.+.+++++++|+|||+++|++ .++.+.||+|++|++|++++.|+++
T Consensus 146 Qrv~iAraL~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l-~~~~~~~drv~vl~~G~iv~~g~~~ 224 (240)
T d1ji0a_ 146 QMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNA-LGALKVAHYGYVLETGQIVLEGKAS 224 (240)
T ss_dssp HHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCH-HHHHHHCSEEEEEETTEEEEEEEHH
T ss_pred HHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCH-HHHHHHCCEEEEEECCEEEEECCHH
T ss_conf 999999999829987400398867999999999999999996899899995889-9999969999999899999984899
Q ss_pred HHH
Q ss_conf 899
Q 004537 382 EAM 384 (746)
Q Consensus 382 ~~~ 384 (746)
++.
T Consensus 225 el~ 227 (240)
T d1ji0a_ 225 ELL 227 (240)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 984
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=0 Score=341.91 Aligned_cols=197 Identities=27% Similarity=0.501 Sum_probs=177.2
Q ss_pred CEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEEECCEECCH--HCCCCEEEEECCCCCCCCCCHHHHHHH
Q ss_conf 127999488099998799862899999997399999974189998870792--102738999038867999999999999
Q 004537 175 GITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SLKSKIGFVTQDDVLFPHLTVKETLTY 252 (746)
Q Consensus 175 ~vs~~i~~Ge~~aIiGpsGsGKSTLl~~L~gr~~~~~~~G~I~~~G~~~~~--~~~~~i~yV~Q~d~l~~~lTV~E~l~f 252 (746)
|||+++. +|+++|+||||||||||+++|+|. ..| .+|+|.+||+++.+ ..++.+|||+|++.+||++||+||+.|
T Consensus 17 ~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl-~~p-~~G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~ltV~enl~~ 93 (240)
T d2onka1 17 NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGI-VKP-DRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAY 93 (240)
T ss_dssp EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTS-SCC-SEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHT
T ss_pred EEEEEEC-CEEEEEECCCCCHHHHHHHHHHCC-CCC-CCEEEEECCEECCCCCHHHCCCEEECCCHHHCCCCHHHHHHHH
T ss_conf 9999749-979999979998099999999739-998-9628999999988699899285225231443522015576665
Q ss_pred HHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHH
Q ss_conf 87406998776999999999999883997422222358556678988989999999996399789994999999999999
Q 004537 253 AALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTAL 332 (746)
Q Consensus 253 ~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~ig~~~~~~LSGGqrqRvsIA~aL~~~P~iLlLDEPTsgLD~~s~~ 332 (746)
+.+ ...+.+++++++++++.+||.+..+..+ +.|||||||||+|||||+.+|++|+|||||+|||+.++.
T Consensus 94 ~l~-----~~~~~~~~~~v~~~l~~~gl~~~~~~~~-----~~LSGG~kQRvaiAral~~~P~illlDEPts~LD~~~~~ 163 (240)
T d2onka1 94 GLR-----NVERVERDRRVREMAEKLGIAHLLDRKP-----ARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKG 163 (240)
T ss_dssp TCT-----TSCHHHHHHHHHHHHHTTTCTTTTTCCG-----GGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHH
T ss_pred HHC-----CCCHHHHHHHHHHHHHHCCCHHHHHCCH-----HHCCHHHHHHHHHHHHHHCCCCCEEECCCCCCCCHHHHH
T ss_conf 323-----3677889999999998638375665794-----448999989999987775167706752865558879999
Q ss_pred HHHHHHHHHHHC-CCEEEEEECCCCHHHHHCCCEEEEEECCEEEEECCHHHHHH
Q ss_conf 999999999978-97799995688908885067799970976999529778999
Q 004537 333 RIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (746)
Q Consensus 333 ~i~~~L~~l~~~-g~Tii~~~Hq~s~~i~~~~D~i~lL~~G~iv~~G~~~~~~~ 385 (746)
.+.+.++++.++ |.|+|+++|++ .++.+.||+|++|++|++++.|+++++++
T Consensus 164 ~i~~~i~~l~~~~g~tvi~vtHd~-~~~~~~adri~vm~~G~ii~~G~~~el~~ 216 (240)
T d2onka1 164 VLMEELRFVQREFDVPILHVTHDL-IEAAMLADEVAVMLNGRIVEKGKLKELFS 216 (240)
T ss_dssp HHHHHHHHHHHHHTCCEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHHHHHHHCCCEEEEEECCH-HHHHHHCCEEEEEECCEEEEEECHHHHHC
T ss_conf 999999999874397699981899-99999699999998999999906999832
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=0 Score=329.45 Aligned_cols=196 Identities=26% Similarity=0.412 Sum_probs=159.4
Q ss_pred CCCCEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEEECCEECCHHCCCCEEEEECCCCCCCCCCHHH
Q ss_conf 45400212799948809999879986289999999739999997418999887079210273899903886799999999
Q 004537 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKE 248 (746)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~L~gr~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~d~l~~~lTV~E 248 (746)
.+++|+|||+++++||++||+||||||||||+++|+|. ++| .+|+|.++| +++||+|++.+|+. ||+|
T Consensus 48 g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl-~~p-~~G~I~~~g---------~i~~v~Q~~~l~~~-tv~e 115 (281)
T d1r0wa_ 48 GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGE-LEA-SEGIIKHSG---------RVSFCSQFSWIMPG-TIKE 115 (281)
T ss_dssp TCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTS-SCC-SEEEEECCS---------CEEEECSSCCCCSE-EHHH
T ss_pred CCEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCC-CCC-CCCEEEECC---------EEEEEECCCCCCCC-EEEC
T ss_conf 97677375999859999999989998299999999579-747-882899999---------99998164302676-0321
Q ss_pred HHHHHHHCCCCCCCCHHHHHHHHHH---HHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCC
Q ss_conf 9999874069987769999999999---9988399742222235855667898898999999999639978999499999
Q 004537 249 TLTYAALLRLPNTLTKQQKEKRAID---VINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSG 325 (746)
Q Consensus 249 ~l~f~a~~~~~~~~~~~~~~~~v~~---~l~~lgL~~~~~t~ig~~~~~~LSGGqrqRvsIA~aL~~~P~iLlLDEPTsg 325 (746)
|+.|+.. ..........+. ......+++..++.++.. ...||||||||++|||+|+.+|+||+|||||++
T Consensus 116 ni~~~~~------~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~-~~~LSgGqkQRv~lARaL~~~p~illLDEPts~ 188 (281)
T d1r0wa_ 116 NIIFGVS------YDEYRYKSVVKACQLQQDITKFAEQDNTVLGEG-GVTLSGGQRARISLARAVYKDADLYLLDSPFGY 188 (281)
T ss_dssp HHTTTSC------CCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTT-CTTSCHHHHHHHHHHHHHHSCCSEEEEESCCCS
T ss_pred CCCCCCC------CCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-CCCCCHHHHHHHHHHHHHHHCCCCHHHCCCCCC
T ss_conf 4203334------560579999999776999984612332355554-237799999999999999869635133385544
Q ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHCCCEEEEEECCEEEEECCHHHHHH
Q ss_conf 999999999999999997897799995688908885067799970976999529778999
Q 004537 326 LDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (746)
Q Consensus 326 LD~~s~~~i~~~L~~l~~~g~Tii~~~Hq~s~~i~~~~D~i~lL~~G~iv~~G~~~~~~~ 385 (746)
||+.++..+++.+......++|+|+++|++. ....||+|++|++|++++.|+++|++.
T Consensus 189 LD~~~~~~i~~~~~~~~~~~~tvi~itH~~~--~l~~aDrI~vl~~G~i~~~Gt~~eL~~ 246 (281)
T d1r0wa_ 189 LDVFTEEQVFESCVCKLMANKTRILVTSKME--HLRKADKILILHQGSSYFYGTFSELQS 246 (281)
T ss_dssp SCHHHHHHHHHHCCCCCTTTSEEEEECSCHH--HHHTCSEEEEEETTEEEEEECHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEECHHH--HHHHCCEEEEEECCEEEEECCHHHHHC
T ss_conf 8989999999999988628999999925289--998599999998999999878999960
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=9.7e-44 Score=307.73 Aligned_cols=207 Identities=27% Similarity=0.415 Sum_probs=176.5
Q ss_pred EEEEEEEEEEEEECCCCCCCCCCCEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEEECCEECCH---
Q ss_conf 08999489999622566644454002127999488099998799862899999997399999974189998870792---
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (746)
Q Consensus 149 ~i~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~L~gr~~~~~~~G~I~~~G~~~~~--- 225 (746)
.++++||+.+ ..|+|||+.+++||+++|+||||||||||+++|+|. . + .+|+|.++|+++..
T Consensus 3 il~~~dv~~~------------~~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl-~-~-~~G~I~~~g~~i~~~~~ 67 (231)
T d1l7vc_ 3 VMQLQDVAES------------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGM-T-S-GKGSIQFAGQPLEAWSA 67 (231)
T ss_dssp EEEEEEECCT------------TTSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTS-C-C-CSSEEEESSSBGGGSCH
T ss_pred EEEEECCCCC------------CEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCC-C-C-CCEEEEECCEECCCCCH
T ss_conf 9999874157------------155588889948989999989998099999999488-7-9-95599999999986998
Q ss_pred -HCCCCEEEEECCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf -1027389990388679999999999998740699877699999999999988399742222235855667898898999
Q 004537 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (746)
Q Consensus 226 -~~~~~i~yV~Q~d~l~~~lTV~E~l~f~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~ig~~~~~~LSGGqrqRv 304 (746)
..+...+|++|+.......++.+++.+....+ .+.++++++++.+++.+..+..+ +.||||||||+
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~~~l~~~~~~~~-----~~LSgG~~Qrv 134 (231)
T d1l7vc_ 68 TKLALHRAYLSQQQTPPFATPVWHYLTLHQHDK--------TRTELLNDVAGALALDDKLGRST-----NQLSGGEWQRV 134 (231)
T ss_dssp HHHHHHEEEECSCCCCCSSCBHHHHHHHHCSCT--------TCHHHHHHHHHHTTCTTTTTSBG-----GGCCHHHHHHH
T ss_pred HHHHHHCEEEECCCCCCCCCCHHHHHHHCCCHH--------HHHHHHHHHHHHCCCHHHHCCCH-----HHCCHHHHHHH
T ss_conf 999864024512135774420988764100146--------68999999998659876767684-----45699889999
Q ss_pred HHHHHHHH-------CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHCCCEEEEEECCEEEEE
Q ss_conf 99999963-------99789994999999999999999999999978977999956889088850677999709769995
Q 004537 305 CIGNEIII-------NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (746)
Q Consensus 305 sIA~aL~~-------~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~Tii~~~Hq~s~~i~~~~D~i~lL~~G~iv~~ 377 (746)
+||++|+. +|++++|||||+|||+.++..+.+.+++++++|.|||+++|++. ++.+.+|++++|++|++++.
T Consensus 135 ~iA~al~~~~p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~-~~~~~~dri~vl~~G~iv~~ 213 (231)
T d1l7vc_ 135 RLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLN-HTLRHAHRAWLLKGGKMLAS 213 (231)
T ss_dssp HHHHHHHHHCTTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHH-HHHHHCSBCCBEETTEECCC
T ss_pred HHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEECCEEEEE
T ss_conf 99999985171338998899971877778989999999999999867999999967799-99997999999979989998
Q ss_pred CCHHHHH
Q ss_conf 2977899
Q 004537 378 GKASEAM 384 (746)
Q Consensus 378 G~~~~~~ 384 (746)
|++++++
T Consensus 214 G~~~ev~ 220 (231)
T d1l7vc_ 214 GRREEVL 220 (231)
T ss_dssp SBHHHHS
T ss_pred CCHHHHH
T ss_conf 8999981
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=6.6e-40 Score=282.04 Aligned_cols=196 Identities=24% Similarity=0.424 Sum_probs=160.3
Q ss_pred EEEEEEEEEEEEECCCCCCCCCCCEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEEECCEECCHHCC
Q ss_conf 08999489999622566644454002127999488099998799862899999997399999974189998870792102
Q 004537 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228 (746)
Q Consensus 149 ~i~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~L~gr~~~~~~~G~I~~~G~~~~~~~~ 228 (746)
.|+++|+++.| ++++|+|+|+++++|++++|+||||||||||+++|+|. ..| .+|+|.+||+++. ..+
T Consensus 2 ~lev~~ls~~y---------~~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl-~~p-~~G~I~~~g~~i~-~~~ 69 (200)
T d1sgwa_ 2 KLEIRDLSVGY---------DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTY-LKP-LKGEIIYNGVPIT-KVK 69 (200)
T ss_dssp EEEEEEEEEES---------SSEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTS-SCC-SEEEEEETTEEGG-GGG
T ss_pred EEEEEEEEEEE---------CCEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCC-CCC-CCCEEEECCEEHH-HHC
T ss_conf 59999899993---------99288420889859989999999997199999999662-056-7788999989626-736
Q ss_pred CCEEEEECCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 73899903886799999999999987406998776999999999999883997422222358556678988989999999
Q 004537 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGN 308 (746)
Q Consensus 229 ~~i~yV~Q~d~l~~~lTV~E~l~f~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~ig~~~~~~LSGGqrqRvsIA~ 308 (746)
.+++|++|+..++..+|++|++.+.+.....+ ..+ +.+.+.++.+++.+. +..+ ..||||||||++||+
T Consensus 70 ~~i~~~~~~~~~~~~~t~~~~l~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~-~~~~-----~~LSgG~~qrv~ia~ 138 (200)
T d1sgwa_ 70 GKIFFLPEEIIVPRKISVEDYLKAVASLYGVK-VNK----NEIMDALESVEVLDL-KKKL-----GELSQGTIRRVQLAS 138 (200)
T ss_dssp GGEEEECSSCCCCTTSBHHHHHHHHHHHTTCC-CCH----HHHHHHHHHTTCCCT-TSBG-----GGSCHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCCCCHHHHHHHHHHHCCCC-CCH----HHHHHHHHHCCCCCC-CCCC-----CCCCCCHHHHHHHHH
T ss_conf 70899950135788828999999999754886-379----999999987488563-0126-----868971888899999
Q ss_pred HHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHCCCEEEEEEC
Q ss_conf 996399789994999999999999999999999978977999956889088850677999709
Q 004537 309 EIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 371 (746)
Q Consensus 309 aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~Tii~~~Hq~s~~i~~~~D~i~lL~~ 371 (746)
+|+.+|++++|||||+|||+.++..+++.++++.+++.++|+++|+. ...||.+.+|.+
T Consensus 139 al~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~~----l~~~D~~~~l~~ 197 (200)
T d1sgwa_ 139 TLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREE----LSYCDVNENLHK 197 (200)
T ss_dssp HTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSC----CTTSSEEEEGGG
T ss_pred HHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECH----HHHCCHHHHEEE
T ss_conf 88649989998686201699999999999999986799999999162----544161234010
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.39 E-value=3.8e-14 Score=109.37 Aligned_cols=156 Identities=14% Similarity=0.108 Sum_probs=99.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEEECCEECCHHCCCCEEEEEC--CCC--CCCCCCHHHHHHHHHHCCCCC
Q ss_conf 9999879986289999999739999997418999887079210273899903--886--799999999999987406998
Q 004537 185 VLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQ--DDV--LFPHLTVKETLTYAALLRLPN 260 (746)
Q Consensus 185 ~~aIiGpsGsGKSTLl~~L~gr~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q--~d~--l~~~lTV~E~l~f~a~~~~~~ 260 (746)
.++|+||||||||||++.|+|.+ .+ ..|.+...+.+..... .+.++..+ .+. .....+..+ ..
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l-~~-~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~----------~~ 68 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERL-GK-RAIGFWTEEVRDPETK-KRTGFRIITTEGKKKIFSSKFFTS----------KK 68 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH-GG-GEEEEEEEEEC-------CCEEEEEETTCCEEEEEETTCCC----------SS
T ss_pred EEEEECCCCCHHHHHHHHHHHCC-CC-CCCEEEECCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH----------HH
T ss_conf 89999899938999999998148-88-8646998771328888-765311233667778875411345----------54
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 77699999999999988399742222235855667898898999999999639978999499999999999999999999
Q 004537 261 TLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQD 340 (746)
Q Consensus 261 ~~~~~~~~~~v~~~l~~lgL~~~~~t~ig~~~~~~LSGGqrqRvsIA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~ 340 (746)
.. ...+ .+ .....+++|+++|.++++++..+|+++++|||....+ ......+.+.+
T Consensus 69 ~~-------------~~~~----~~-----~~~~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~--~~~~~~~~l~~ 124 (178)
T d1ye8a1 69 LV-------------GSYG----VN-----VQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMEL--FSKKFRDLVRQ 124 (178)
T ss_dssp EE-------------TTEE----EC-----HHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGG--GCHHHHHHHHH
T ss_pred HH-------------HHHH----CC-----CCHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCH--HHHHHHHHHHH
T ss_conf 43-------------0230----37-----6256653201378999999740997423027773100--45799999998
Q ss_pred HHHC-CCEEEEEECCCCHHHHHCCCEEEEEECCEEEEECC
Q ss_conf 9978-97799995688908885067799970976999529
Q 004537 341 IAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (746)
Q Consensus 341 l~~~-g~Tii~~~Hq~s~~i~~~~D~i~lL~~G~iv~~G~ 379 (746)
+.+. +.++++++|+... ...+|++..+.+|+++.-++
T Consensus 125 ~l~~~~~~il~~~h~~~~--~~~~~~i~~~~~~~i~~v~~ 162 (178)
T d1ye8a1 125 IMHDPNVNVVATIPIRDV--HPLVKEIRRLPGAVLIELTP 162 (178)
T ss_dssp HHTCTTSEEEEECCSSCC--SHHHHHHHTCTTCEEEECCT
T ss_pred HHCCCCCEEEEEECCHHH--HHHHCEEEEEECCEEEEECC
T ss_conf 750579789999744778--98636599871999999899
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.11 E-value=1.4e-09 Score=78.70 Aligned_cols=77 Identities=25% Similarity=0.302 Sum_probs=64.4
Q ss_pred CCCCCHHHHHHHHHHHHH----HHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHCCCEEEE
Q ss_conf 667898898999999999----6399789994999999999999999999999978977999956889088850677999
Q 004537 293 VRGVSGGERKRVCIGNEI----IINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLIL 368 (746)
Q Consensus 293 ~~~LSGGqrqRvsIA~aL----~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~Tii~~~Hq~s~~i~~~~D~i~l 368 (746)
...+|+|||+...++..+ ..+++++++|||-++|++.....+.+.|+..++ +.-+|+++|.|. +.+.+|++..
T Consensus 217 ~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~-~~QviitTHsp~--~~~~~d~~~~ 293 (308)
T d1e69a_ 217 LSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSK-HTQFIVITHNKI--VMEAADLLHG 293 (308)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTT-TSEEEEECCCTT--GGGGCSEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCC-CCEEEEEECCHH--HHHHCCCEEE
T ss_conf 1102577766777776655654226744554320335797899999999998554-887999989889--9973242899
Q ss_pred --EECC
Q ss_conf --7097
Q 004537 369 --LGKG 372 (746)
Q Consensus 369 --L~~G 372 (746)
+.+|
T Consensus 294 v~~~~g 299 (308)
T d1e69a_ 294 VTMVNG 299 (308)
T ss_dssp EEESSS
T ss_pred EEEECC
T ss_conf 999699
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.86 E-value=4.6e-09 Score=75.28 Aligned_cols=74 Identities=22% Similarity=0.309 Sum_probs=61.9
Q ss_pred CCCCHHHHHHHHHHHHH----HHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHCCCEEEEE
Q ss_conf 67898898999999999----63997899949999999999999999999999789779999568890888506779997
Q 004537 294 RGVSGGERKRVCIGNEI----IINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL 369 (746)
Q Consensus 294 ~~LSGGqrqRvsIA~aL----~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~Tii~~~Hq~s~~i~~~~D~i~lL 369 (746)
..+|||||.++++|..+ ..++++++||||+++||+.....+.+.|++++..+.-+|+++|+|. +.+.+|+++..
T Consensus 331 ~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~~--~~~~ad~~~~V 408 (427)
T d1w1wa_ 331 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNT--MFEKSDALVGV 408 (427)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHH--HHTTCSEEEEE
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHH--HHHHCCCEEEE
T ss_conf 3322304799999999999547999779996887778999999999999997289988999958789--99736617999
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.90 E-value=2.9e-05 Score=49.83 Aligned_cols=134 Identities=16% Similarity=0.126 Sum_probs=71.5
Q ss_pred CCCEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEEECCEECCHHCCCCEEEEECCCCCCCCCCHHHH
Q ss_conf 54002127999488099998799862899999997399999974189998870792102738999038867999999999
Q 004537 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKET 249 (746)
Q Consensus 170 ~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~L~gr~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~d~l~~~lTV~E~ 249 (746)
+.|=+|+++. +.+.++.|.|||.+||||+||.++-...-... | ..+. ..-+-++--|.+|..+...|+
T Consensus 29 ~~VpNdi~l~-~~~~~~iiTGpN~~GKSt~lk~i~l~~~laq~-G------~~Vp----A~~a~~~~~d~I~~~~~~~d~ 96 (234)
T d1wb9a2 29 PFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYI-G------SYVP----AQKVEIGPIDRIFTRVGAADD 96 (234)
T ss_dssp CCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTT-T------CCBS----SSEEEECCCCEEEEEEC----
T ss_pred CCCCEEEEEC-CCCEEEEEECCCCHHHHHHHHHHHHHHHHHHC-C------CEEE----CCCEECCCCHHHEEEECCCCC
T ss_conf 8264057988-99539999546731368999987999999872-9------7674----176661344202348746753
Q ss_pred HHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHH
Q ss_conf 99987406998776999999999999883997422222358556678988989999999996399789994999999999
Q 004537 250 LTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDST 329 (746)
Q Consensus 250 l~f~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~ig~~~~~~LSGGqrqRvsIA~aL~~~P~iLlLDEPTsgLD~~ 329 (746)
+.-+. +-=..|-+|++-...-..+.+++++||+..|-|+.
T Consensus 97 ~~~~~----------------------------------------S~F~~E~~~~~~il~~~~~~sLvliDE~~~gT~~~ 136 (234)
T d1wb9a2 97 LASGR----------------------------------------STFMVEMTETANILHNATEYSLVLMDEIGRGTSTY 136 (234)
T ss_dssp -----------------------------------------------CHHHHHHHHHHHHHCCTTEEEEEESCCCCSSSS
T ss_pred CCCCH----------------------------------------HHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHH
T ss_conf 43653----------------------------------------18999999999999745466088532223587745
Q ss_pred HHHHHHHH-HHHHHHC-CCEEEEEECCC
Q ss_conf 99999999-9999978-97799995688
Q 004537 330 TALRIVQM-LQDIAEA-GKTVVTTIHQP 355 (746)
Q Consensus 330 s~~~i~~~-L~~l~~~-g~Tii~~~Hq~ 355 (746)
....+... ++.+..+ +..+++++|..
T Consensus 137 eg~~l~~a~l~~l~~~~~~~~i~tTH~~ 164 (234)
T d1wb9a2 137 DGLSLAWACAENLANKIKALTLFATHYF 164 (234)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEECSCG
T ss_pred HHHHHHHHHHHHHHCCCCCEEEEECCHH
T ss_conf 6667898764543204544289852468
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.70 E-value=7.9e-05 Score=46.91 Aligned_cols=136 Identities=18% Similarity=0.147 Sum_probs=71.1
Q ss_pred CCEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEEECCEECCHHCCCCEEEEECCCCCCCCCCHHHHH
Q ss_conf 40021279994880999987998628999999973999999741899988707921027389990388679999999999
Q 004537 171 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETL 250 (746)
Q Consensus 171 ~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~L~gr~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~d~l~~~lTV~E~l 250 (746)
.+=+|+.+ .++++.|.|||.+||||+||.++-...-.. .| ..+.. .-+-++.-|.++..+...|++
T Consensus 26 ~VpNdi~~---~~~~~iiTGpN~~GKSt~lk~i~l~~ilAq-~G------~~vpA----~~~~i~~~d~I~~~~~~~d~~ 91 (224)
T d1ewqa2 26 FVPNDLEM---AHELVLITGPNMAGKSTFLRQTALIALLAQ-VG------SFVPA----EEAHLPLFDGIYTRIGASDDL 91 (224)
T ss_dssp CCCEEEEE---SSCEEEEESCSSSSHHHHHHHHHHHHHHHT-TT------CCBSS----SEEEECCCSEEEEECCC----
T ss_pred EECCEEEE---CCCEEEEECCCCCCCCHHHHHHHHHHHHHH-CC------CEEEC----CCEEEEECCEEEEEECCCCCC
T ss_conf 54555884---786799978873453234556589999985-25------04613----751994011699998777602
Q ss_pred HHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHH
Q ss_conf 99874069987769999999999998839974222223585566789889899999999963997899949999999999
Q 004537 251 TYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTT 330 (746)
Q Consensus 251 ~f~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~ig~~~~~~LSGGqrqRvsIA~aL~~~P~iLlLDEPTsgLD~~s 330 (746)
.-+ . +.=..|-+|++-......+.+++++||...|-|+..
T Consensus 92 ~~~--------~--------------------------------StF~~el~~~~~il~~~~~~sLvliDE~~~gT~~~e 131 (224)
T d1ewqa2 92 AGG--------K--------------------------------STFMVEMEEVALILKEATENSLVLLDEVGRGTSSLD 131 (224)
T ss_dssp --C--------C--------------------------------SHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHH
T ss_pred CCC--------C--------------------------------CHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCHHH
T ss_conf 378--------3--------------------------------078986788987750289772785545456862332
Q ss_pred HHHHHHH-HHHHHHCCCEEEEEECCCCHHHHHC
Q ss_conf 9999999-9999978977999956889088850
Q 004537 331 ALRIVQM-LQDIAEAGKTVVTTIHQPSSRLFHK 362 (746)
Q Consensus 331 ~~~i~~~-L~~l~~~g~Tii~~~Hq~s~~i~~~ 362 (746)
...+... ++.+.+.+..+++++|.. ++..+
T Consensus 132 g~ala~aile~L~~~~~~~i~tTH~~--eL~~l 162 (224)
T d1ewqa2 132 GVAIATAVAEALHERRAYTLFATHYF--ELTAL 162 (224)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEECCCH--HHHTC
T ss_pred HCCHHHHHHHHHHHCCCCEEEEEECH--HHHHH
T ss_conf 00258888888862376137865202--33322
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=97.64 E-value=0.00012 Score=45.82 Aligned_cols=156 Identities=21% Similarity=0.206 Sum_probs=72.5
Q ss_pred CCEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEEECCEECCHHCCCCEEEEECCCCCCCCCCHHHHH
Q ss_conf 40021279994880999987998628999999973999999741899988707921027389990388679999999999
Q 004537 171 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETL 250 (746)
Q Consensus 171 ~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~L~gr~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~d~l~~~lTV~E~l 250 (746)
+-|+++.+=+.+|+++.|.|++|+||||++.-++-... ...| ..+.|+.-| ++..+..
T Consensus 23 ~~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~~~a--~~~g--------------~~v~~~s~E------~~~~~~~ 80 (277)
T d1cr2a_ 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWG--TAMG--------------KKVGLAMLE------ESVEETA 80 (277)
T ss_dssp TTHHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHHHHH--HTSC--------------CCEEEEESS------SCHHHHH
T ss_pred HHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHH--HHCC--------------CCEEEEEEC------CCHHHHH
T ss_conf 66888746978980899994799979999999997265--5336--------------634576401------1113577
Q ss_pred H-HHH-HCCCCCCCCHHHH-----HHHHHHHHHHC-CCC--CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 9-987-4069987769999-----99999999883-997--422222358556678988989999999996399789994
Q 004537 251 T-YAA-LLRLPNTLTKQQK-----EKRAIDVINEL-GLE--RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLD 320 (746)
Q Consensus 251 ~-f~a-~~~~~~~~~~~~~-----~~~v~~~l~~l-gL~--~~~~t~ig~~~~~~LSGGqrqRvsIA~aL~~~P~iLlLD 320 (746)
. +.+ ....+.......+ ....+++.+.+ +.. ...+. .......+.....-...--.+|+++++|
T Consensus 81 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~vvID 154 (277)
T d1cr2a_ 81 EDLIGLHNRVRLRQSDSLKREIIENGKFDQWFDELFGNDTFHLYDS------FAEAETDRLLAKLAYMRSGLGCDVIILD 154 (277)
T ss_dssp HHHHHHHTTCCGGGCHHHHHHHHHTSHHHHHHHHHHSSSCEEEECC------C-CCCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred HHHHHHHHCCCCHHHCCCCCCHHHHHHHHHHHHHHHCCCEEEEECC------CCCHHHHHHHHHHHHHHHCCCCCEEEEC
T ss_conf 6999986458710101222221456778889887403521466214------3310689999986543213676259970
Q ss_pred CCC-----CCC--CHHHHHHHHHHHHHHHHC-CCEEEEEECC
Q ss_conf 999-----999--999999999999999978-9779999568
Q 004537 321 EPT-----SGL--DSTTALRIVQMLQDIAEA-GKTVVTTIHQ 354 (746)
Q Consensus 321 EPT-----sgL--D~~s~~~i~~~L~~l~~~-g~Tii~~~Hq 354 (746)
-.+ .+- +......++..|+.++++ +.+|++++|-
T Consensus 155 ~l~~l~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~vi~~~q~ 196 (277)
T d1cr2a_ 155 HISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHL 196 (277)
T ss_dssp EEEC----------CHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEECCC
T ss_conf 542120346544306778999999999765016552031035
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=97.02 E-value=0.0008 Score=40.16 Aligned_cols=153 Identities=19% Similarity=0.226 Sum_probs=73.9
Q ss_pred CCEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEEECCEECCHHCCCCEEEEECCCCCCCCCCHHHHH
Q ss_conf 40021279994880999987998628999999973999999741899988707921027389990388679999999999
Q 004537 171 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETL 250 (746)
Q Consensus 171 ~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~L~gr~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~d~l~~~lTV~E~l 250 (746)
.++.+ +.||+++.|.|++|+|||||+--|+.... .|.-.+.+.. .....+-|+.-++.. . .+.+-+
T Consensus 21 ~li~G----~~pg~~~~i~G~~G~GKS~l~l~la~~ia----~g~~~~~~~~---~~~~~vl~~~~E~~~--~-~~~~Rl 86 (274)
T d1nlfa_ 21 YVLPN----MVAGTVGALVSPGGAGKSMLALQLAAQIA----GGPDLLEVGE---LPTGPVIYLPAEDPP--T-AIHHRL 86 (274)
T ss_dssp EEETT----EETTSEEEEEESTTSSHHHHHHHHHHHHH----TCCCTTCCCC---CCCCCEEEEESSSCH--H-HHHHHH
T ss_pred HHHCC----CCCCCEEEEEECCCCCHHHHHHHHHHHHH----CCCCCCCCCC---CCCCCEEEEECCCHH--H-HHHHHH
T ss_conf 98689----55895899992899989999999999997----6997211123---578736898512349--9-999999
Q ss_pred HHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCC-----C
Q ss_conf 99874069987769999999999998839974222223585566789889899999999963997899949999-----9
Q 004537 251 TYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTS-----G 325 (746)
Q Consensus 251 ~f~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~ig~~~~~~LSGGqrqRvsIA~aL~~~P~iLlLDEPTs-----g 325 (746)
. +... ........ .....+.+....+... ....- ..+.-......+|+++++|--+. -
T Consensus 87 ~--~~~~---~~~~~~~~----~~~~~~~~~~~~~~~~-----~~~~~---~~~~~~~~~~~~~~lvviD~l~~~~~~~~ 149 (274)
T d1nlfa_ 87 H--ALGA---HLSAEERQ----AVADGLLIQPLIGSLP-----NIMAP---EWFDGLKRAAEGRRLMVLDTLRRFHIEEE 149 (274)
T ss_dssp H--HHHT---TSCHHHHH----HHHHHEEECCCTTSCC-----CTTSH---HHHHHHHHHHTTCSEEEEECGGGGCCSCT
T ss_pred H--HHHH---CCCHHHHH----CCCCCCEECCCCCCCC-----HHHHH---HHHHHHHHHCCCCCEEECCCHHHHCCCCC
T ss_conf 9--9862---36866653----1233323214567420-----35789---99999887526765896281354226652
Q ss_pred CCHHHHHHHHHHHHHHHHC-CCEEEEEECC
Q ss_conf 9999999999999999978-9779999568
Q 004537 326 LDSTTALRIVQMLQDIAEA-GKTVVTTIHQ 354 (746)
Q Consensus 326 LD~~s~~~i~~~L~~l~~~-g~Tii~~~Hq 354 (746)
-|......++..|+.+++. +.+++++.|.
T Consensus 150 ~~~~~~~~~~~~l~~la~~~~~~vi~v~H~ 179 (274)
T d1nlfa_ 150 NASGPMAQVIGRMEAIAADTGCSIVFLHHA 179 (274)
T ss_dssp TCHHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCEEHHHHC
T ss_conf 322568999988777764479754013100
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.01 E-value=0.00029 Score=43.09 Aligned_cols=35 Identities=29% Similarity=0.425 Sum_probs=27.3
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEEE
Q ss_conf 8809999879986289999999739999997418999
Q 004537 182 PGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITY 218 (746)
Q Consensus 182 ~Ge~~aIiGpsGsGKSTLl~~L~gr~~~~~~~G~I~~ 218 (746)
+|+.++++|+||.|||||+|.|.+.... ..|+|.-
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~--~T~~vs~ 128 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKL--RVSEVSE 128 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCC--C------
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHH--HCCCCCC
T ss_conf 6980899788987788887730535550--1068420
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=96.99 E-value=0.0067 Score=33.99 Aligned_cols=154 Identities=16% Similarity=0.168 Sum_probs=79.3
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEEECCEECCHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHC
Q ss_conf 79994880999987998628999999973999999741899988707921027389990388679999999999998740
Q 004537 177 TGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALL 256 (746)
Q Consensus 177 s~~i~~Ge~~aIiGpsGsGKSTLl~~L~gr~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~d~l~~~lTV~E~l~f~a~~ 256 (746)
.|=+++|.++.|.|++|+|||+|..-++..... .| ..+.|+.-+ .+..+........
T Consensus 20 ~GGi~~gsl~li~G~pGsGKT~l~~qia~~~~~---~~--------------~~~~~is~e------~~~~~~~~~~~~~ 76 (242)
T d1tf7a2 20 GGGFFKDSIILATGATGTGKTLLVSRFVENACA---NK--------------ERAILFAYE------ESRAQLLRNAYSW 76 (242)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHT---TT--------------CCEEEEESS------SCHHHHHHHHHTT
T ss_pred CCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHH---HC--------------CCCCEEECC------CCHHHHHHHHHHC
T ss_conf 689869849999918999999999999999987---23--------------244112126------7999999999982
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH-HHCCCEEEEECCCC---CCCHHHHH
Q ss_conf 699877699999999999988399742222235855667898898999999999-63997899949999---99999999
Q 004537 257 RLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEI-IINPSLLFLDEPTS---GLDSTTAL 332 (746)
Q Consensus 257 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~ig~~~~~~LSGGqrqRvsIA~aL-~~~P~iLlLDEPTs---gLD~~s~~ 332 (746)
.. ... +.. ..+.....+. ........+. .-.|...+ -.+|.+++.|.-+. +.+.....
T Consensus 77 ~~----~~~-------~~~-~~~~~~~~~~-----~~~~~~~~~~-~~~i~~~i~~~~~~~vviDs~~~~~~~~~~~~~~ 138 (242)
T d1tf7a2 77 GM----DFE-------EME-RQNLLKIVCA-----YPESAGLEDH-LQIIKSEINDFKPARIAIDSLSALARGVSNNAFR 138 (242)
T ss_dssp SC----CHH-------HHH-HTTSEEECCC-----CGGGSCHHHH-HHHHHHHHHTTCCSEEEEECHHHHTSSSCHHHHH
T ss_pred CC----CHH-------HHH-HCCCEEEEEE-----ECCHHHHHHH-HHHHHHHHHHCCCCEEEEECCHHHHCCCCHHHHH
T ss_conf 99----869-------985-4586179973-----0001017999-9999999984088533220431430489999999
Q ss_pred HHHHHHHHHHH-CCCEEEEEECCC---------CHHHHHCCCEEEEEEC
Q ss_conf 99999999997-897799995688---------9088850677999709
Q 004537 333 RIVQMLQDIAE-AGKTVVTTIHQP---------SSRLFHKFDKLILLGK 371 (746)
Q Consensus 333 ~i~~~L~~l~~-~g~Tii~~~Hq~---------s~~i~~~~D~i~lL~~ 371 (746)
..+..|.++++ .+.+++++.|.. ...+...+|.++.|..
T Consensus 139 ~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ad~vi~l~~ 187 (242)
T d1tf7a2 139 QFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQY 187 (242)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEE
T ss_pred HHHHHHHHHHHHCCCEEEEEEEEEEECCCCCCCCCCEEEECCEEEEEEE
T ss_conf 9999999999986983999985675125544577640464216999998
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.84 E-value=0.00039 Score=42.24 Aligned_cols=25 Identities=44% Similarity=0.767 Sum_probs=22.8
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8099998799862899999997399
Q 004537 183 GEVLALMGPSGSGKTTLLNLLSGRL 207 (746)
Q Consensus 183 Ge~~aIiGpsGsGKSTLl~~L~gr~ 207 (746)
|+++.|+||||||||||.+.|..+.
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~ 26 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERI 26 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 7499998999999999999998458
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=96.78 E-value=0.00053 Score=41.38 Aligned_cols=26 Identities=38% Similarity=0.580 Sum_probs=23.5
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 88099998799862899999997399
Q 004537 182 PGEVLALMGPSGSGKTTLLNLLSGRL 207 (746)
Q Consensus 182 ~Ge~~aIiGpsGsGKSTLl~~L~gr~ 207 (746)
.|++++|.||+||||||+.+.|+.++
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~l 28 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLP 28 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 98599998899998899999999995
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.68 E-value=0.0007 Score=40.57 Aligned_cols=27 Identities=26% Similarity=0.629 Sum_probs=22.6
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHH
Q ss_conf 999488099998799862899999997
Q 004537 178 GSVNPGEVLALMGPSGSGKTTLLNLLS 204 (746)
Q Consensus 178 ~~i~~Ge~~aIiGpsGsGKSTLl~~L~ 204 (746)
..+.++.+++|+|||||||||++.+|.
T Consensus 20 i~f~~~~l~~i~G~NGsGKS~ileAi~ 46 (427)
T d1w1wa_ 20 VGFGESNFTSIIGPNGSGKSNMMDAIS 46 (427)
T ss_dssp EECTTCSEEEEECSTTSSHHHHHHHHH
T ss_pred EECCCCCEEEEECCCCCCHHHHHHHHH
T ss_conf 758999989999999998899999999
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.51 E-value=0.001 Score=39.53 Aligned_cols=25 Identities=32% Similarity=0.606 Sum_probs=22.4
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8809999879986289999999739
Q 004537 182 PGEVLALMGPSGSGKTTLLNLLSGR 206 (746)
Q Consensus 182 ~Ge~~aIiGpsGsGKSTLl~~L~gr 206 (746)
.|.++.|+||||+||+||.+.|.-+
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~ 25 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKT 25 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 9809999999999999999999863
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=96.46 E-value=0.00098 Score=39.59 Aligned_cols=23 Identities=52% Similarity=0.592 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998799862899999997399
Q 004537 185 VLALMGPSGSGKTTLLNLLSGRL 207 (746)
Q Consensus 185 ~~aIiGpsGsGKSTLl~~L~gr~ 207 (746)
+++|+|++|||||||++-|..++
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l 26 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPAL 26 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89999189998999999999999
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.44 E-value=0.00036 Score=42.49 Aligned_cols=35 Identities=31% Similarity=0.402 Sum_probs=27.0
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEEE
Q ss_conf 8809999879986289999999739999997418999
Q 004537 182 PGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITY 218 (746)
Q Consensus 182 ~Ge~~aIiGpsGsGKSTLl~~L~gr~~~~~~~G~I~~ 218 (746)
.|+.++++|+||+|||||+|.|.+... ...|+|.-
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~--~~t~~vs~ 130 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELG--LRTNEISE 130 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC-------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHH--HHHCCCCC
T ss_conf 356499987787348789875151767--64035553
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=96.38 E-value=0.00012 Score=45.72 Aligned_cols=33 Identities=24% Similarity=0.224 Sum_probs=28.2
Q ss_pred CEECEEEEEECCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 0021279994880999987998628999999973
Q 004537 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSG 205 (746)
Q Consensus 172 iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~L~g 205 (746)
-.++.++.+.+| +++|+|||||||||++++|.-
T Consensus 14 ~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~ 46 (222)
T d1qhla_ 14 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVT 46 (222)
T ss_dssp TEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHH
T ss_pred CEEEEEEECCCC-EEEEECCCCCCHHHHHHHHHH
T ss_conf 870279974998-089988999987999999999
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=96.37 E-value=0.0013 Score=38.85 Aligned_cols=27 Identities=33% Similarity=0.549 Sum_probs=23.9
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 488099998799862899999997399
Q 004537 181 NPGEVLALMGPSGSGKTTLLNLLSGRL 207 (746)
Q Consensus 181 ~~Ge~~aIiGpsGsGKSTLl~~L~gr~ 207 (746)
+.+.++.|+||+||||||+.+.|+.++
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 987189998999989899999999986
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=96.31 E-value=0.02 Score=30.84 Aligned_cols=117 Identities=21% Similarity=0.264 Sum_probs=66.0
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEEECCEECCHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHCCCCC
Q ss_conf 48809999879986289999999739999997418999887079210273899903886799999999999987406998
Q 004537 181 NPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPN 260 (746)
Q Consensus 181 ~~Ge~~aIiGpsGsGKSTLl~~L~gr~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~d~l~~~lTV~E~l~f~a~~~~~~ 260 (746)
.++-++.+.||.||||||++..+...+..+ ..+ +-.+. |+.=+..-.+
T Consensus 156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~~~--~~~---------------i~tiE-dPiE~~~~~~-------------- 203 (401)
T d1p9ra_ 156 RPHGIILVTGPTGSGKSTTLYAGLQELNSS--ERN---------------ILTVE-DPIEFDIDGI-------------- 203 (401)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCCT--TSC---------------EEEEE-SSCCSCCSSS--------------
T ss_pred HHHCEEEEECCCCCCCCHHHHHHHHHHCCC--CCE---------------EEEEC-CCCCCCCCCC--------------
T ss_conf 410548987678777447799986662578--746---------------99962-6743456788--------------
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 77699999999999988399742222235855667898898999999999639978999499999999999999999999
Q 004537 261 TLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQD 340 (746)
Q Consensus 261 ~~~~~~~~~~v~~~l~~lgL~~~~~t~ig~~~~~~LSGGqrqRvsIA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~ 340 (746)
. ...+... .+.+ ---++..+|=.+|++++..|... ..++...+ +
T Consensus 204 --~---------------------q~~v~~~--~~~~----~~~~l~~~lR~dPDvi~igEiRd---~~ta~~a~----~ 247 (401)
T d1p9ra_ 204 --G---------------------QTQVNPR--VDMT----FARGLRAILRQDPDVVMVGEIRD---LETAQIAV----Q 247 (401)
T ss_dssp --E---------------------EEECBGG--GTBC----HHHHHHHHGGGCCSEEEESCCCS---HHHHHHHH----H
T ss_pred --C---------------------EEEECCC--CCCC----HHHHHHHHHHHCCCEEEECCCCC---HHHHHHHH----H
T ss_conf --7---------------------0265587--6779----99999999841388898457687---59999999----9
Q ss_pred HHHCCCEEEEEECCCCHHHHHCCCEEE
Q ss_conf 997897799995688908885067799
Q 004537 341 IAEAGKTVVTTIHQPSSRLFHKFDKLI 367 (746)
Q Consensus 341 l~~~g~Tii~~~Hq~s~~i~~~~D~i~ 367 (746)
.+..|+.|+.+.|-.+. +...+|++
T Consensus 248 aa~tGhlV~tTlHa~~a--~~~~~Rl~ 272 (401)
T d1p9ra_ 248 ASLTGHLVMSTLHTNTA--VGAVTRLR 272 (401)
T ss_dssp HHHTTCEEEEEECCSSS--HHHHHHHH
T ss_pred HHHCCCEEEEEECCCCH--HHHHHHHH
T ss_conf 97249858998336766--76654321
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.23 E-value=0.0016 Score=38.10 Aligned_cols=27 Identities=30% Similarity=0.340 Sum_probs=24.1
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 488099998799862899999997399
Q 004537 181 NPGEVLALMGPSGSGKTTLLNLLSGRL 207 (746)
Q Consensus 181 ~~Ge~~aIiGpsGsGKSTLl~~L~gr~ 207 (746)
+.|.++.|+|++||||||+-+.|+-++
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L 30 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTL 30 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 997699988999999999999999998
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=96.15 E-value=0.0018 Score=37.83 Aligned_cols=24 Identities=33% Similarity=0.601 Sum_probs=21.4
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 099998799862899999997399
Q 004537 184 EVLALMGPSGSGKTTLLNLLSGRL 207 (746)
Q Consensus 184 e~~aIiGpsGsGKSTLl~~L~gr~ 207 (746)
+.++|.||+|+|||||.+.|+.++
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 289998999998999999999984
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=96.09 E-value=0.0023 Score=37.16 Aligned_cols=27 Identities=26% Similarity=0.582 Sum_probs=23.3
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 488099998799862899999997399
Q 004537 181 NPGEVLALMGPSGSGKTTLLNLLSGRL 207 (746)
Q Consensus 181 ~~Ge~~aIiGpsGsGKSTLl~~L~gr~ 207 (746)
++|-.++|.||+||||||+.+.|+-++
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l 29 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAEL 29 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 998889998289998899999999985
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.95 E-value=0.0014 Score=38.46 Aligned_cols=25 Identities=32% Similarity=0.404 Sum_probs=20.8
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 0999987998628999999973999
Q 004537 184 EVLALMGPSGSGKTTLLNLLSGRLM 208 (746)
Q Consensus 184 e~~aIiGpsGsGKSTLl~~L~gr~~ 208 (746)
++++|+|++|||||||++-|..++.
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L~ 26 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAAV 26 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 0999980999989999999999998
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=95.91 E-value=0.0027 Score=36.63 Aligned_cols=25 Identities=28% Similarity=0.449 Sum_probs=22.3
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8099998799862899999997399
Q 004537 183 GEVLALMGPSGSGKTTLLNLLSGRL 207 (746)
Q Consensus 183 Ge~~aIiGpsGsGKSTLl~~L~gr~ 207 (746)
.+++.|.|++||||||+.+.|+.++
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l 27 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 8599998999999899999999972
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=95.85 E-value=0.0026 Score=36.73 Aligned_cols=22 Identities=41% Similarity=0.614 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999879986289999999739
Q 004537 185 VLALMGPSGSGKTTLLNLLSGR 206 (746)
Q Consensus 185 ~~aIiGpsGsGKSTLl~~L~gr 206 (746)
.++|+|++|+|||||+|.|.|+
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~ 46 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHCCC
T ss_conf 9999899998799999985298
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=95.75 E-value=0.0038 Score=35.66 Aligned_cols=25 Identities=32% Similarity=0.440 Sum_probs=21.9
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8099998799862899999997399
Q 004537 183 GEVLALMGPSGSGKTTLLNLLSGRL 207 (746)
Q Consensus 183 Ge~~aIiGpsGsGKSTLl~~L~gr~ 207 (746)
.++++|.|++||||||+.+.|+.++
T Consensus 1 ~kiI~i~G~~GsGKsT~~~~L~~~l 25 (190)
T d1khta_ 1 NKVVVVTGVPGVGSTTSSQLAMDNL 25 (190)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 9889998999989899999999999
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=95.73 E-value=0.0037 Score=35.70 Aligned_cols=33 Identities=27% Similarity=0.473 Sum_probs=24.8
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEEECCE
Q ss_conf 09999879986289999999739999997418999887
Q 004537 184 EVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDH 221 (746)
Q Consensus 184 e~~aIiGpsGsGKSTLl~~L~gr~~~~~~~G~I~~~G~ 221 (746)
.++.|.||+||||||+.+.|+..+ ++.+.++|.
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~-----~~~~~~~~d 35 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQL-----DNSAYIEGD 35 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS-----SSEEEEEHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHC-----CCCEEEEHH
T ss_conf 089998999999899999999980-----998898307
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=95.73 E-value=0.0038 Score=35.62 Aligned_cols=34 Identities=24% Similarity=0.336 Sum_probs=24.3
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEEECCEE
Q ss_conf 099998799862899999997399999974189998870
Q 004537 184 EVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP 222 (746)
Q Consensus 184 e~~aIiGpsGsGKSTLl~~L~gr~~~~~~~G~I~~~G~~ 222 (746)
+++.|.|++|||||||.+.|.... .|...++..+
T Consensus 3 klIii~G~pGsGKTTla~~L~~~~-----~~~~~~~~d~ 36 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIAKN-----PGFYNINRDD 36 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS-----TTEEEECHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHC-----CCCEEECHHH
T ss_conf 799998999999999999999957-----9979960399
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=95.71 E-value=0.0032 Score=36.14 Aligned_cols=21 Identities=38% Similarity=0.662 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999987998628999999973
Q 004537 185 VLALMGPSGSGKTTLLNLLSG 205 (746)
Q Consensus 185 ~~aIiGpsGsGKSTLl~~L~g 205 (746)
+++|+|+.|||||||++.|..
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~ 22 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGR 22 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899991899839999999999
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.69 E-value=0.0041 Score=35.44 Aligned_cols=24 Identities=29% Similarity=0.545 Sum_probs=20.7
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 809999879986289999999739
Q 004537 183 GEVLALMGPSGSGKTTLLNLLSGR 206 (746)
Q Consensus 183 Ge~~aIiGpsGsGKSTLl~~L~gr 206 (746)
.+.+.|+||||+||+||++-|..+
T Consensus 3 ~k~ivl~Gpsg~GK~tl~~~L~~~ 26 (178)
T d1kgda_ 3 RKTLVLLGAHGVGRRHIKNTLITK 26 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHHH
T ss_conf 771999998999999999999970
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.67 E-value=0.0027 Score=36.60 Aligned_cols=26 Identities=42% Similarity=0.452 Sum_probs=23.1
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 88099998799862899999997399
Q 004537 182 PGEVLALMGPSGSGKTTLLNLLSGRL 207 (746)
Q Consensus 182 ~Ge~~aIiGpsGsGKSTLl~~L~gr~ 207 (746)
.|.++.|.|++||||||+.+.|+-++
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l 43 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYL 43 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99699988999999999999999999
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.66 E-value=0.0035 Score=35.85 Aligned_cols=22 Identities=59% Similarity=0.610 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999879986289999999739
Q 004537 185 VLALMGPSGSGKTTLLNLLSGR 206 (746)
Q Consensus 185 ~~aIiGpsGsGKSTLl~~L~gr 206 (746)
++||-||+|||||||.+.|..+
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~ 45 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQT 45 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9997898878999999999998
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.63 E-value=0.0037 Score=35.69 Aligned_cols=23 Identities=43% Similarity=0.719 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998799862899999997399
Q 004537 185 VLALMGPSGSGKTTLLNLLSGRL 207 (746)
Q Consensus 185 ~~aIiGpsGsGKSTLl~~L~gr~ 207 (746)
-+.|+|||||||+||++.|....
T Consensus 3 pIvl~GpsG~GK~tl~~~L~~~~ 25 (186)
T d1gkya_ 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHC
T ss_conf 69998999999899999999748
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=95.63 E-value=0.053 Score=27.99 Aligned_cols=165 Identities=19% Similarity=0.108 Sum_probs=76.5
Q ss_pred CEECE-EEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEEECCEECCHHCCCCEEEEECCCCCCCCCCHHHHH
Q ss_conf 00212-79994880999987998628999999973999999741899988707921027389990388679999999999
Q 004537 172 ILNGI-TGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETL 250 (746)
Q Consensus 172 iL~~v-s~~i~~Ge~~aIiGpsGsGKSTLl~~L~gr~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~d~l~~~lTV~E~l 250 (746)
-|+++ .|=+++|+++.|.|++|+|||+|.--++.... . .| ...+.|+.-+ .+..+..
T Consensus 14 ~LD~~l~GGi~~G~~~~I~G~~G~GKT~la~~~~~~~~--~-~~-------------~~~~~~~s~e------~~~~~~~ 71 (242)
T d1tf7a1 14 GFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGI--I-EF-------------DEPGVFVTFE------ETPQDII 71 (242)
T ss_dssp THHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHH--H-HH-------------CCCEEEEESS------SCHHHHH
T ss_pred HHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHH--H-HC-------------CCCCCCCCCC------CCHHHHH
T ss_conf 79885568996983999994799999999999999999--8-56-------------8874201266------7999999
Q ss_pred HHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHH-HHHHHHHH--HCCCEEEEECCCCCC-
Q ss_conf 99874069987769999999999998839974222223585566789889899-99999996--399789994999999-
Q 004537 251 TYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR-VCIGNEII--INPSLLFLDEPTSGL- 326 (746)
Q Consensus 251 ~f~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~ig~~~~~~LSGGqrqR-vsIA~aL~--~~P~iLlLDEPTsgL- 326 (746)
........ . ..+.+................ ........... +.-.+..+ .+|.+++.|--+.-.
T Consensus 72 ~~~~~~~~----~-------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~l~~~i~~~~~~~viiD~~~~l~~ 139 (242)
T d1tf7a1 72 KNARSFGW----D-------LAKLVDEGKLFILDASPDPEG-QEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQ 139 (242)
T ss_dssp HHHGGGTC----C-------HHHHHHTTSEEEEECCCCSSC-CSCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTST
T ss_pred HHHHHCCC----C-------HHHHHHHCCHHHHHHCCCHHH-HHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 99998499----8-------489887143024442103354-44430245899999999998863122200207889987
Q ss_pred ---CHHHHHHHHHHHHH-HHHCCCEEEEEECCCCH--------HHHHCCCEEEEEE
Q ss_conf ---99999999999999-99789779999568890--------8885067799970
Q 004537 327 ---DSTTALRIVQMLQD-IAEAGKTVVTTIHQPSS--------RLFHKFDKLILLG 370 (746)
Q Consensus 327 ---D~~s~~~i~~~L~~-l~~~g~Tii~~~Hq~s~--------~i~~~~D~i~lL~ 370 (746)
+......++..+.+ +++.+.|++++.|.... .....+|.++.+.
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~ 195 (242)
T d1tf7a1 140 QYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILR 195 (242)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEE
T ss_pred HCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEECCEEEEEE
T ss_conf 60572678999999999998639716884210255422246762335362999988
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=95.61 E-value=0.0043 Score=35.31 Aligned_cols=22 Identities=32% Similarity=0.428 Sum_probs=20.5
Q ss_pred EEEEEECCCCCCHHHHHHHHHC
Q ss_conf 0999987998628999999973
Q 004537 184 EVLALMGPSGSGKTTLLNLLSG 205 (746)
Q Consensus 184 e~~aIiGpsGsGKSTLl~~L~g 205 (746)
.+++|+||+||||||+.+.|+-
T Consensus 7 ~iI~i~G~pGSGKsT~a~~La~ 28 (194)
T d1qf9a_ 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
T ss_conf 4899989999988999999999
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=95.61 E-value=0.0037 Score=35.68 Aligned_cols=23 Identities=39% Similarity=0.494 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998799862899999997399
Q 004537 185 VLALMGPSGSGKTTLLNLLSGRL 207 (746)
Q Consensus 185 ~~aIiGpsGsGKSTLl~~L~gr~ 207 (746)
.+.|+||+||||||+.+.|+-++
T Consensus 6 ~I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 6 NILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 79898999999899999999997
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.58 E-value=0.0056 Score=34.50 Aligned_cols=24 Identities=42% Similarity=0.695 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999987998628999999973999
Q 004537 185 VLALMGPSGSGKTTLLNLLSGRLM 208 (746)
Q Consensus 185 ~~aIiGpsGsGKSTLl~~L~gr~~ 208 (746)
.++|+|++|+|||||+|.|.+...
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~~~ 28 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTDSV 28 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 999999999889999999967999
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.56 E-value=0.0062 Score=34.23 Aligned_cols=30 Identities=23% Similarity=0.462 Sum_probs=26.3
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 999488099998799862899999997399
Q 004537 178 GSVNPGEVLALMGPSGSGKTTLLNLLSGRL 207 (746)
Q Consensus 178 ~~i~~Ge~~aIiGpsGsGKSTLl~~L~gr~ 207 (746)
|=+++|+++.|.||+|+|||||..-++...
T Consensus 18 GGi~~G~v~~i~G~~GsGKT~l~l~la~~~ 47 (242)
T d1n0wa_ 18 GGIETGSITEMFGEFRTGKTQICHTLAVTC 47 (242)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCCCCEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 898599799999589999999999999999
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.53 E-value=0.0038 Score=35.61 Aligned_cols=25 Identities=44% Similarity=0.574 Sum_probs=21.3
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 0999987998628999999973999
Q 004537 184 EVLALMGPSGSGKTTLLNLLSGRLM 208 (746)
Q Consensus 184 e~~aIiGpsGsGKSTLl~~L~gr~~ 208 (746)
+.+.|.||+|+|||||++.++..+.
T Consensus 2 k~v~ItG~~GtGKTtl~~~i~~~l~ 26 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 6999988999719999999999999
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=95.51 E-value=0.0055 Score=34.58 Aligned_cols=26 Identities=35% Similarity=0.500 Sum_probs=22.5
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 48809999879986289999999739
Q 004537 181 NPGEVLALMGPSGSGKTTLLNLLSGR 206 (746)
Q Consensus 181 ~~Ge~~aIiGpsGsGKSTLl~~L~gr 206 (746)
++|-.+.|+||+||||||+.+.|+-+
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~ 26 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKN 26 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 99638999899999889999999998
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.49 E-value=0.0052 Score=34.73 Aligned_cols=24 Identities=29% Similarity=0.376 Sum_probs=21.2
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 809999879986289999999739
Q 004537 183 GEVLALMGPSGSGKTTLLNLLSGR 206 (746)
Q Consensus 183 Ge~~aIiGpsGsGKSTLl~~L~gr 206 (746)
-.++.|+||+||||||+.+.|+.+
T Consensus 8 ~~iI~i~GppGSGKsT~a~~La~~ 31 (196)
T d1ukza_ 8 VSVIFVLGGPGAGKGTQCEKLVKD 31 (196)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 728999899999989999999998
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.39 E-value=0.0051 Score=34.78 Aligned_cols=21 Identities=52% Similarity=0.789 Sum_probs=18.7
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999879986289999999739
Q 004537 186 LALMGPSGSGKTTLLNLLSGR 206 (746)
Q Consensus 186 ~aIiGpsGsGKSTLl~~L~gr 206 (746)
+.|+|||||||+||.+.|...
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~ 23 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQE 23 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 999999999999999999974
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.33 E-value=0.0059 Score=34.34 Aligned_cols=51 Identities=18% Similarity=0.258 Sum_probs=33.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEEECCEECCHHCCCCEEEEECCCCCCCCCCHHH
Q ss_conf 9999879986289999999739999997418999887079210273899903886799999999
Q 004537 185 VLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKE 248 (746)
Q Consensus 185 ~~aIiGpsGsGKSTLl~~L~gr~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~d~l~~~lTV~E 248 (746)
++||-|++||||||+.+.|+..+.... -......+..+.+|+.+.+ ..-.+
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l~~~~------------~~~~~~~~~vi~~D~yy~~-~~~~~ 54 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLLGQNE------------VDYRQKQVVILSQDSFYRV-LTSEQ 54 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTGGG------------SCGGGCSEEEEEGGGGBCC-CCHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCHHC------------CCCCCCCEEEEECCCCCCC-CCHHH
T ss_conf 999989997879999999999964101------------3457884399934653224-40222
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=95.29 E-value=0.00094 Score=39.72 Aligned_cols=44 Identities=25% Similarity=0.235 Sum_probs=31.0
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEEECCEECC
Q ss_conf 48809999879986289999999739999997418999887079
Q 004537 181 NPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS 224 (746)
Q Consensus 181 ~~Ge~~aIiGpsGsGKSTLl~~L~gr~~~~~~~G~I~~~G~~~~ 224 (746)
+.|.++-+.|.|||||||+.+.|.-++......-.+.++|..+.
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~iR 65 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIR 65 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEECCHHHH
T ss_conf 99869999899999989999999988777427508997536788
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=95.19 E-value=0.0055 Score=34.54 Aligned_cols=23 Identities=35% Similarity=0.585 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998799862899999997399
Q 004537 185 VLALMGPSGSGKTTLLNLLSGRL 207 (746)
Q Consensus 185 ~~aIiGpsGsGKSTLl~~L~gr~ 207 (746)
.++|+|++|+|||||+|.|.|+.
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~ 24 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKK 24 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999988999999996898
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.16 E-value=0.0064 Score=34.13 Aligned_cols=26 Identities=23% Similarity=0.429 Sum_probs=22.8
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 48809999879986289999999739
Q 004537 181 NPGEVLALMGPSGSGKTTLLNLLSGR 206 (746)
Q Consensus 181 ~~Ge~~aIiGpsGsGKSTLl~~L~gr 206 (746)
+.+.++.|+||+||||||+.+.|+.+
T Consensus 6 ~~~~iI~l~G~pGSGKsT~a~~La~~ 31 (194)
T d3adka_ 6 KKSKIIFVVGGPGSGKGTQCEKIVQK 31 (194)
T ss_dssp HTSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 67828999899999879999999998
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=95.15 E-value=0.0067 Score=33.97 Aligned_cols=23 Identities=39% Similarity=0.651 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998799862899999997399
Q 004537 185 VLALMGPSGSGKTTLLNLLSGRL 207 (746)
Q Consensus 185 ~~aIiGpsGsGKSTLl~~L~gr~ 207 (746)
.+.|+||+||||||+-+.|+-++
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 49998999999999999999996
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=95.13 E-value=0.004 Score=35.51 Aligned_cols=21 Identities=38% Similarity=0.616 Sum_probs=19.4
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999879986289999999739
Q 004537 186 LALMGPSGSGKTTLLNLLSGR 206 (746)
Q Consensus 186 ~aIiGpsGsGKSTLl~~L~gr 206 (746)
+||+|++++|||||+|.|.|.
T Consensus 4 VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEEE
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999899998799999999689
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=95.10 E-value=0.0065 Score=34.07 Aligned_cols=23 Identities=30% Similarity=0.588 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998799862899999997399
Q 004537 185 VLALMGPSGSGKTTLLNLLSGRL 207 (746)
Q Consensus 185 ~~aIiGpsGsGKSTLl~~L~gr~ 207 (746)
.++|+|.+|+|||||+|.|.|+.
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89998999986999999985898
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.09 E-value=0.0069 Score=33.90 Aligned_cols=24 Identities=38% Similarity=0.571 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999987998628999999973999
Q 004537 185 VLALMGPSGSGKTTLLNLLSGRLM 208 (746)
Q Consensus 185 ~~aIiGpsGsGKSTLl~~L~gr~~ 208 (746)
-+||+|.+|+|||||+|.|.|+..
T Consensus 58 ~Iai~G~~n~GKSSLiNaL~G~~~ 81 (400)
T d1tq4a_ 58 NVAVTGETGSGKSSFINTLRGIGN 81 (400)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCCT
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 799989999978999999958886
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.08 E-value=0.008 Score=33.46 Aligned_cols=22 Identities=27% Similarity=0.454 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999879986289999999739
Q 004537 185 VLALMGPSGSGKTTLLNLLSGR 206 (746)
Q Consensus 185 ~~aIiGpsGsGKSTLl~~L~gr 206 (746)
++.|+||+||||||..+.|+-.
T Consensus 3 iI~i~GppGSGKsT~a~~La~~ 24 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEK 24 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9999799999989999999998
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=95.08 E-value=0.0078 Score=33.55 Aligned_cols=23 Identities=30% Similarity=0.637 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998799862899999997399
Q 004537 185 VLALMGPSGSGKTTLLNLLSGRL 207 (746)
Q Consensus 185 ~~aIiGpsGsGKSTLl~~L~gr~ 207 (746)
.+||.||+||||||+-+.|+-.+
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~l 27 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDF 27 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99978999879899999999996
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=95.07 E-value=0.0074 Score=33.69 Aligned_cols=34 Identities=29% Similarity=0.409 Sum_probs=24.9
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEEECC
Q ss_conf 80999987998628999999973999999741899988
Q 004537 183 GEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYND 220 (746)
Q Consensus 183 Ge~~aIiGpsGsGKSTLl~~L~gr~~~~~~~G~I~~~G 220 (746)
...+.+.||+|+|||||.+.|++.+. .+-+.+|+
T Consensus 32 P~~ilL~GpPGtGKT~la~~la~~~~----~~~~~i~~ 65 (273)
T d1gvnb_ 32 PTAFLLGGQPGSGKTSLRSAIFEETQ----GNVIVIDN 65 (273)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHTT----TCCEEECT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHH----CCEEEEEC
T ss_conf 97999889799889999999999865----15489832
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.02 E-value=0.0088 Score=33.18 Aligned_cols=23 Identities=30% Similarity=0.501 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998799862899999997399
Q 004537 185 VLALMGPSGSGKTTLLNLLSGRL 207 (746)
Q Consensus 185 ~~aIiGpsGsGKSTLl~~L~gr~ 207 (746)
.++|+|++|+|||||++.|.|..
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~ 24 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999998999999996777
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=94.97 E-value=0.0094 Score=32.99 Aligned_cols=23 Identities=43% Similarity=0.602 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998799862899999997399
Q 004537 185 VLALMGPSGSGKTTLLNLLSGRL 207 (746)
Q Consensus 185 ~~aIiGpsGsGKSTLl~~L~gr~ 207 (746)
.++|+|.+|+|||||++.|.|+.
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~~ 29 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGVK 29 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999999999999996888
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=94.96 E-value=0.007 Score=33.86 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999879986289999999739
Q 004537 185 VLALMGPSGSGKTTLLNLLSGR 206 (746)
Q Consensus 185 ~~aIiGpsGsGKSTLl~~L~gr 206 (746)
.+.|+||+||||||+.+.|+-+
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~ 26 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTK 26 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9999889999989999999998
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=94.95 E-value=0.0081 Score=33.44 Aligned_cols=34 Identities=26% Similarity=0.412 Sum_probs=24.8
Q ss_pred CEECEEEEEECCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 0021279994880999987998628999999973
Q 004537 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSG 205 (746)
Q Consensus 172 iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~L~g 205 (746)
+|+.+.-.-...-.++|.||+|+|||||++.|..
T Consensus 43 ll~~~~~~~~~~~~IgitG~pGaGKSTLi~~l~~ 76 (327)
T d2p67a1 43 LLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGM 76 (327)
T ss_dssp HHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHH
T ss_pred HHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 9998653169832897438999989999999999
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=94.91 E-value=0.0087 Score=33.24 Aligned_cols=22 Identities=41% Similarity=0.622 Sum_probs=19.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998799862899999997399
Q 004537 186 LALMGPSGSGKTTLLNLLSGRL 207 (746)
Q Consensus 186 ~aIiGpsGsGKSTLl~~L~gr~ 207 (746)
+.|+|++||||||+.+.|+.++
T Consensus 3 I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999998899999999983
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=94.90 E-value=0.0091 Score=33.10 Aligned_cols=22 Identities=32% Similarity=0.585 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999879986289999999739
Q 004537 185 VLALMGPSGSGKTTLLNLLSGR 206 (746)
Q Consensus 185 ~~aIiGpsGsGKSTLl~~L~gr 206 (746)
.+||+|.+|+|||||++.|.|.
T Consensus 10 kV~iiG~~~~GKSTLin~l~~~ 31 (186)
T d1mkya2 10 KVAIVGRPNVGKSTLFNAILNK 31 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999999999999999778
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=94.85 E-value=0.011 Score=32.58 Aligned_cols=22 Identities=45% Similarity=0.738 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999879986289999999739
Q 004537 185 VLALMGPSGSGKTTLLNLLSGR 206 (746)
Q Consensus 185 ~~aIiGpsGsGKSTLl~~L~gr 206 (746)
.++|+|.+++|||||+|.|.|+
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999979999899999999589
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.82 E-value=0.0092 Score=33.07 Aligned_cols=21 Identities=38% Similarity=0.536 Sum_probs=19.0
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999879986289999999739
Q 004537 186 LALMGPSGSGKTTLLNLLSGR 206 (746)
Q Consensus 186 ~aIiGpsGsGKSTLl~~L~gr 206 (746)
+.|+||+||||||+.+.|+-+
T Consensus 3 I~i~G~pGSGKsT~a~~La~~ 23 (182)
T d1zina1 3 LVLMGLPGAGKGTQAEKIVAA 23 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 999889999989999999998
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=94.69 E-value=0.012 Score=32.26 Aligned_cols=25 Identities=40% Similarity=0.687 Sum_probs=21.6
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8099998799862899999997399
Q 004537 183 GEVLALMGPSGSGKTTLLNLLSGRL 207 (746)
Q Consensus 183 Ge~~aIiGpsGsGKSTLl~~L~gr~ 207 (746)
|=.++++|++++|||||++.|.|+.
T Consensus 1 ~~kI~lvG~~nvGKSsLin~l~~~~ 25 (161)
T d2gj8a1 1 GMKVVIAGRPNAGKSSLLNALAGRE 25 (161)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 9899998999998999999996888
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=94.67 E-value=0.0095 Score=32.98 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998799862899999997399
Q 004537 185 VLALMGPSGSGKTTLLNLLSGRL 207 (746)
Q Consensus 185 ~~aIiGpsGsGKSTLl~~L~gr~ 207 (746)
.+.++|++||||||+-+.|+-++
T Consensus 4 ~Iil~G~~GsGKSTia~~LA~~L 26 (170)
T d1e6ca_ 4 PIFMVGARGCGMTTVGRELARAL 26 (170)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
T ss_conf 88998899998899999999994
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=94.67 E-value=0.0072 Score=33.79 Aligned_cols=21 Identities=29% Similarity=0.561 Sum_probs=19.5
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999879986289999999739
Q 004537 186 LALMGPSGSGKTTLLNLLSGR 206 (746)
Q Consensus 186 ~aIiGpsGsGKSTLl~~L~gr 206 (746)
+||+|.+++|||||+|.|.|.
T Consensus 4 VaivG~~nvGKSTLin~L~~~ 24 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRA 24 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999899999899999999689
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=94.66 E-value=0.012 Score=32.27 Aligned_cols=23 Identities=43% Similarity=0.732 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998799862899999997399
Q 004537 185 VLALMGPSGSGKTTLLNLLSGRL 207 (746)
Q Consensus 185 ~~aIiGpsGsGKSTLl~~L~gr~ 207 (746)
+++|.||+||||+|+-+.|+.++
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~ 27 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEAL 27 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89977999889899999999996
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.63 E-value=0.013 Score=32.02 Aligned_cols=28 Identities=32% Similarity=0.535 Sum_probs=25.1
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 9994880999987998628999999973
Q 004537 178 GSVNPGEVLALMGPSGSGKTTLLNLLSG 205 (746)
Q Consensus 178 ~~i~~Ge~~aIiGpsGsGKSTLl~~L~g 205 (746)
|=+++|+++.|.||+|+|||||..-++.
T Consensus 29 GGi~~G~~~li~G~pGsGKT~l~lq~~~ 56 (251)
T d1szpa2 29 GGVETGSITELFGEFRTGKSQLCHTLAV 56 (251)
T ss_dssp SSEESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 9986996999983899988999999999
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.60 E-value=0.013 Score=32.15 Aligned_cols=25 Identities=28% Similarity=0.348 Sum_probs=20.9
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 4880999987998628999999973
Q 004537 181 NPGEVLALMGPSGSGKTTLLNLLSG 205 (746)
Q Consensus 181 ~~Ge~~aIiGpsGsGKSTLl~~L~g 205 (746)
+.-+++.++|++||||||+.+-++.
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 9998999989999989999999997
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=94.58 E-value=0.06 Score=27.63 Aligned_cols=25 Identities=36% Similarity=0.353 Sum_probs=20.6
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8099998799862899999997399
Q 004537 183 GEVLALMGPSGSGKTTLLNLLSGRL 207 (746)
Q Consensus 183 Ge~~aIiGpsGsGKSTLl~~L~gr~ 207 (746)
..+++++||+|+||||.+-=|+.++
T Consensus 10 ~~vi~lvGp~GvGKTTTiaKLA~~~ 34 (207)
T d1ls1a2 10 RNLWFLVGLQGSGKTTTAAKLALYY 34 (207)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 8689998999998899999999999
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=94.56 E-value=0.013 Score=32.08 Aligned_cols=23 Identities=30% Similarity=0.486 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998799862899999997399
Q 004537 185 VLALMGPSGSGKTTLLNLLSGRL 207 (746)
Q Consensus 185 ~~aIiGpsGsGKSTLl~~L~gr~ 207 (746)
.+.|+||+||||||+.+.|+-++
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899998799999999987
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=94.55 E-value=0.012 Score=32.19 Aligned_cols=24 Identities=29% Similarity=0.421 Sum_probs=20.9
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 099998799862899999997399
Q 004537 184 EVLALMGPSGSGKTTLLNLLSGRL 207 (746)
Q Consensus 184 e~~aIiGpsGsGKSTLl~~L~gr~ 207 (746)
+++.|.|++||||||+.+.|+.++
T Consensus 2 kiivi~G~~GsGKTT~~~~La~~L 25 (194)
T d1nksa_ 2 KIGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 199998989989899999999999
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.52 E-value=0.014 Score=31.92 Aligned_cols=23 Identities=22% Similarity=0.385 Sum_probs=20.4
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 09999879986289999999739
Q 004537 184 EVLALMGPSGSGKTTLLNLLSGR 206 (746)
Q Consensus 184 e~~aIiGpsGsGKSTLl~~L~gr 206 (746)
.+++++|.+|+||||+.+.|+..
T Consensus 3 ~li~l~GlpgsGKSTla~~L~~~ 25 (213)
T d1bifa1 3 TLIVMVGLPARGKTYISKKLTRY 25 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
T ss_conf 89999899999999999999999
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=94.52 E-value=0.014 Score=31.89 Aligned_cols=26 Identities=23% Similarity=0.380 Sum_probs=22.0
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 48809999879986289999999739
Q 004537 181 NPGEVLALMGPSGSGKTTLLNLLSGR 206 (746)
Q Consensus 181 ~~Ge~~aIiGpsGsGKSTLl~~L~gr 206 (746)
...-.++|.||+|+|||||++.|...
T Consensus 49 ~~~~~igitG~pGaGKSTli~~l~~~ 74 (323)
T d2qm8a1 49 GRAIRVGITGVPGVGKSTTIDALGSL 74 (323)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 98159861179988899999999998
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=94.48 E-value=0.0055 Score=34.54 Aligned_cols=31 Identities=26% Similarity=0.432 Sum_probs=24.9
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 7999488099998799862899999997399
Q 004537 177 TGSVNPGEVLALMGPSGSGKTTLLNLLSGRL 207 (746)
Q Consensus 177 s~~i~~Ge~~aIiGpsGsGKSTLl~~L~gr~ 207 (746)
..-++.+.-+.|.|+.||||||+++.|.+..
T Consensus 160 ~~~v~~~~nili~G~tgSGKTT~l~al~~~i 190 (323)
T d1g6oa_ 160 KDGIAIGKNVIVCGGTGSGKTTYIKSIMEFI 190 (323)
T ss_dssp HHHHHHTCCEEEEESTTSSHHHHHHHHGGGS
T ss_pred HHHHHHCCCEEEEEECCCCCHHHHHHHHHHC
T ss_conf 9999837888999403566257899986530
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=94.46 E-value=0.012 Score=32.20 Aligned_cols=25 Identities=28% Similarity=0.526 Sum_probs=20.4
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8809999879986289999999739
Q 004537 182 PGEVLALMGPSGSGKTTLLNLLSGR 206 (746)
Q Consensus 182 ~Ge~~aIiGpsGsGKSTLl~~L~gr 206 (746)
|+.-+.++||+|+|||.|.+.|+..
T Consensus 48 ~~~~iLl~GPpG~GKT~lAkalA~~ 72 (309)
T d1ofha_ 48 TPKNILMIGPTGVGKTEIARRLAKL 72 (309)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHC
T ss_conf 9866999899998888999998621
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.42 E-value=0.0094 Score=33.00 Aligned_cols=26 Identities=23% Similarity=0.359 Sum_probs=23.0
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 88099998799862899999997399
Q 004537 182 PGEVLALMGPSGSGKTTLLNLLSGRL 207 (746)
Q Consensus 182 ~Ge~~aIiGpsGsGKSTLl~~L~gr~ 207 (746)
.+.+++|-|+.||||||+++.|+.++
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l 26 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLC 26 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99889998788877999999999997
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.40 E-value=0.013 Score=32.01 Aligned_cols=22 Identities=41% Similarity=0.542 Sum_probs=19.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998799862899999997399
Q 004537 186 LALMGPSGSGKTTLLNLLSGRL 207 (746)
Q Consensus 186 ~aIiGpsGsGKSTLl~~L~gr~ 207 (746)
+.++|++||||||+-+.|+.++
T Consensus 4 IvliG~~G~GKSTig~~La~~l 25 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKAL 25 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 8998899998899999999984
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=94.37 E-value=0.014 Score=31.92 Aligned_cols=45 Identities=22% Similarity=0.399 Sum_probs=32.4
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEEECCEECCHHCCCCEEEEECCCCCCCC
Q ss_conf 099998799862899999997399999974189998870792102738999038867999
Q 004537 184 EVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPH 243 (746)
Q Consensus 184 e~~aIiGpsGsGKSTLl~~L~gr~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~d~l~~~ 243 (746)
=+++|-|++||||||+.+.|...+.... -...+..+.+|+.+.+.
T Consensus 81 ~iIGIaG~sgSGKSTla~~L~~lL~~~~---------------~~~~v~~Is~D~F~~~~ 125 (308)
T d1sq5a_ 81 YIISIAGSVAVGKSTTARVLQALLSRWP---------------EHRRVELITTDGFLHPN 125 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHTTST---------------TCCCEEEEEGGGGBCCH
T ss_pred EEEEEECCCCCCCCHHHHHHHHHHHHHC---------------CCCCEEEEEEEEEECCC
T ss_conf 8999968999987689999999973046---------------89965999521568984
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.33 E-value=0.015 Score=31.59 Aligned_cols=27 Identities=30% Similarity=0.396 Sum_probs=23.5
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 488099998799862899999997399
Q 004537 181 NPGEVLALMGPSGSGKTTLLNLLSGRL 207 (746)
Q Consensus 181 ~~Ge~~aIiGpsGsGKSTLl~~L~gr~ 207 (746)
+.|.+++|-|+.||||||+.+.|...+
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L 27 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEAL 27 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 980599998998889999999999999
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=94.29 E-value=0.011 Score=32.52 Aligned_cols=24 Identities=38% Similarity=0.391 Sum_probs=21.2
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 099998799862899999997399
Q 004537 184 EVLALMGPSGSGKTTLLNLLSGRL 207 (746)
Q Consensus 184 e~~aIiGpsGsGKSTLl~~L~gr~ 207 (746)
-+++|-|+.||||||+++.|+..+
T Consensus 10 ~~I~ieG~~GsGKTTl~~~L~~~l 33 (197)
T d2vp4a1 10 FTVLIEGNIGSGKTTYLNHFEKYK 33 (197)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGGT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 199988999988899999999870
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=94.25 E-value=0.021 Score=30.62 Aligned_cols=27 Identities=33% Similarity=0.587 Sum_probs=23.8
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHH
Q ss_conf 999488099998799862899999997
Q 004537 178 GSVNPGEVLALMGPSGSGKTTLLNLLS 204 (746)
Q Consensus 178 ~~i~~Ge~~aIiGpsGsGKSTLl~~L~ 204 (746)
|=+++|+++.|.||+|+||||+.--++
T Consensus 31 GGlp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 31 GGIETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHH
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 995588799998589898899999999
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.23 E-value=0.016 Score=31.47 Aligned_cols=24 Identities=29% Similarity=0.310 Sum_probs=20.6
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 099998799862899999997399
Q 004537 184 EVLALMGPSGSGKTTLLNLLSGRL 207 (746)
Q Consensus 184 e~~aIiGpsGsGKSTLl~~L~gr~ 207 (746)
+-++|+|++|+|||||++.+.+..
T Consensus 1 k~V~ivG~~~~GKTsLl~~l~~~~ 24 (207)
T d2fh5b1 1 RAVLFVGLCDSGKTLLFVRLLTGQ 24 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 989999999989899999998099
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.23 E-value=0.016 Score=31.54 Aligned_cols=22 Identities=36% Similarity=0.588 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999879986289999999739
Q 004537 185 VLALMGPSGSGKTTLLNLLSGR 206 (746)
Q Consensus 185 ~~aIiGpsGsGKSTLl~~L~gr 206 (746)
.+.|+||+||||||+-+.|+..
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~ 23 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEK 23 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 8999889999979999999999
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=94.22 E-value=0.0094 Score=32.99 Aligned_cols=22 Identities=41% Similarity=0.670 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999879986289999999739
Q 004537 185 VLALMGPSGSGKTTLLNLLSGR 206 (746)
Q Consensus 185 ~~aIiGpsGsGKSTLl~~L~gr 206 (746)
.++|+|++|+|||||++.+.+.
T Consensus 15 kI~lvG~~~vGKTsLl~~l~~~ 36 (186)
T d1f6ba_ 15 KLVFLGLDNAGKTTLLHMLKDD 36 (186)
T ss_dssp EEEEEEETTSSHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999998989999999678
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=94.15 E-value=0.016 Score=31.37 Aligned_cols=22 Identities=36% Similarity=0.543 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999879986289999999739
Q 004537 185 VLALMGPSGSGKTTLLNLLSGR 206 (746)
Q Consensus 185 ~~aIiGpsGsGKSTLl~~L~gr 206 (746)
.+.|+||+||||||+-+.|+-+
T Consensus 8 rIiliG~PGSGKtT~a~~La~~ 29 (189)
T d2ak3a1 8 RAAIMGAPGSGKGTVSSRITKH 29 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 6999889999879999999999
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.12 E-value=0.017 Score=31.28 Aligned_cols=23 Identities=39% Similarity=0.595 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998799862899999997399
Q 004537 185 VLALMGPSGSGKTTLLNLLSGRL 207 (746)
Q Consensus 185 ~~aIiGpsGsGKSTLl~~L~gr~ 207 (746)
.++++|++|+|||||++.+.+..
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~ 24 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDR 24 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999999999999995899
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.12 E-value=0.02 Score=30.74 Aligned_cols=23 Identities=39% Similarity=0.605 Sum_probs=20.0
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 09999879986289999999739
Q 004537 184 EVLALMGPSGSGKTTLLNLLSGR 206 (746)
Q Consensus 184 e~~aIiGpsGsGKSTLl~~L~gr 206 (746)
..+.+.||+|+||||++++++..
T Consensus 53 ~~lll~GPpG~GKTt~a~~la~~ 75 (253)
T d1sxja2 53 RAAMLYGPPGIGKTTAAHLVAQE 75 (253)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
T ss_conf 44999879999888999999999
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=94.10 E-value=0.016 Score=31.42 Aligned_cols=24 Identities=33% Similarity=0.479 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999987998628999999973999
Q 004537 185 VLALMGPSGSGKTTLLNLLSGRLM 208 (746)
Q Consensus 185 ~~aIiGpsGsGKSTLl~~L~gr~~ 208 (746)
.++|+|.+|+|||||++.+.+...
T Consensus 7 kI~ivG~~~vGKSSLi~~~~~~~~ 30 (169)
T d1upta_ 7 RILILGLDGAGKTTILYRLQVGEV 30 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 999999999899999999967987
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=94.09 E-value=0.016 Score=31.38 Aligned_cols=22 Identities=23% Similarity=0.400 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999879986289999999739
Q 004537 185 VLALMGPSGSGKTTLLNLLSGR 206 (746)
Q Consensus 185 ~~aIiGpsGsGKSTLl~~L~gr 206 (746)
.+.|+||+||||||..+.|+-+
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~ 23 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEK 23 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 8999879999989999999998
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=94.05 E-value=0.016 Score=31.44 Aligned_cols=22 Identities=32% Similarity=0.413 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999879986289999999739
Q 004537 185 VLALMGPSGSGKTTLLNLLSGR 206 (746)
Q Consensus 185 ~~aIiGpsGsGKSTLl~~L~gr 206 (746)
.++|+|++|+|||||++-+.+.
T Consensus 2 kivlvG~~~vGKSsLi~~l~~~ 23 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKLG 23 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999998989999999659
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=93.99 E-value=0.017 Score=31.33 Aligned_cols=20 Identities=40% Similarity=0.609 Sum_probs=19.2
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99987998628999999973
Q 004537 186 LALMGPSGSGKTTLLNLLSG 205 (746)
Q Consensus 186 ~aIiGpsGsGKSTLl~~L~g 205 (746)
+||+|+..+|||||+|.|.+
T Consensus 8 IaiiG~~naGKSTL~n~L~~ 27 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTE 27 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCHHHHHHHHHH
T ss_conf 99990778709999999997
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=93.93 E-value=0.026 Score=30.01 Aligned_cols=31 Identities=29% Similarity=0.419 Sum_probs=26.2
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 7999488099998799862899999997399
Q 004537 177 TGSVNPGEVLALMGPSGSGKTTLLNLLSGRL 207 (746)
Q Consensus 177 s~~i~~Ge~~aIiGpsGsGKSTLl~~L~gr~ 207 (746)
.|-+++|+++.|.|++|+||||+.--++-..
T Consensus 28 ~GGl~~G~l~~i~G~~G~GKT~~~l~~a~~~ 58 (258)
T d2i1qa2 28 GGGLESQSVTEFAGVFGSGKTQIMHQSCVNL 58 (258)
T ss_dssp TSSEETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCCCEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 7986288599999179999899999999999
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=93.87 E-value=0.019 Score=31.03 Aligned_cols=21 Identities=38% Similarity=0.692 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999987998628999999973
Q 004537 185 VLALMGPSGSGKTTLLNLLSG 205 (746)
Q Consensus 185 ~~aIiGpsGsGKSTLl~~L~g 205 (746)
+++|.|++||||||+.+.|.-
T Consensus 5 IIgitG~~gSGKstva~~l~~ 25 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLRS 25 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999989887789999999998
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.82 E-value=0.021 Score=30.69 Aligned_cols=22 Identities=41% Similarity=0.641 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999879986289999999739
Q 004537 185 VLALMGPSGSGKTTLLNLLSGR 206 (746)
Q Consensus 185 ~~aIiGpsGsGKSTLl~~L~gr 206 (746)
.+.|+||+||||||+.+.|+-+
T Consensus 4 rIvl~G~pGSGKtT~a~~La~~ 25 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQER 25 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9999899999989999999999
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=93.82 E-value=0.023 Score=30.39 Aligned_cols=26 Identities=31% Similarity=0.466 Sum_probs=23.1
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 88099998799862899999997399
Q 004537 182 PGEVLALMGPSGSGKTTLLNLLSGRL 207 (746)
Q Consensus 182 ~Ge~~aIiGpsGsGKSTLl~~L~gr~ 207 (746)
.|..++|-|+.||||||+.+.|..++
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L 26 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETL 26 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 98789998998887999999999999
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=93.75 E-value=0.023 Score=30.38 Aligned_cols=25 Identities=12% Similarity=0.341 Sum_probs=21.6
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8809999879986289999999739
Q 004537 182 PGEVLALMGPSGSGKTTLLNLLSGR 206 (746)
Q Consensus 182 ~Ge~~aIiGpsGsGKSTLl~~L~gr 206 (746)
.+..+.|.||+|+|||||++.++..
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~ 52 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINE 52 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 5987999869998299999999997
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.73 E-value=0.026 Score=30.05 Aligned_cols=28 Identities=25% Similarity=0.344 Sum_probs=24.8
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 9994880999987998628999999973
Q 004537 178 GSVNPGEVLALMGPSGSGKTTLLNLLSG 205 (746)
Q Consensus 178 ~~i~~Ge~~aIiGpsGsGKSTLl~~L~g 205 (746)
|=+++|+++.|.||+|+|||++.--++.
T Consensus 32 GGip~G~~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 32 GGIESMAITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp SSBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 9976897999988998878899999999
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=93.70 E-value=0.021 Score=30.73 Aligned_cols=22 Identities=36% Similarity=0.650 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999879986289999999739
Q 004537 185 VLALMGPSGSGKTTLLNLLSGR 206 (746)
Q Consensus 185 ~~aIiGpsGsGKSTLl~~L~gr 206 (746)
.++++|++|+|||||++.+.+.
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~ 25 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGE 25 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHCCC
T ss_conf 9999999998999999998089
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=93.65 E-value=0.023 Score=30.34 Aligned_cols=22 Identities=41% Similarity=0.531 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999879986289999999739
Q 004537 185 VLALMGPSGSGKTTLLNLLSGR 206 (746)
Q Consensus 185 ~~aIiGpsGsGKSTLl~~L~gr 206 (746)
.+.+.||+|+||||+.++++..
T Consensus 47 ~lll~Gp~G~GKTtla~~iak~ 68 (231)
T d1iqpa2 47 HLLFAGPPGVGKTTAALALARE 68 (231)
T ss_dssp EEEEESCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 6999789997487999999999
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=93.65 E-value=0.029 Score=29.73 Aligned_cols=24 Identities=33% Similarity=0.630 Sum_probs=20.6
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 880999987998628999999973
Q 004537 182 PGEVLALMGPSGSGKTTLLNLLSG 205 (746)
Q Consensus 182 ~Ge~~aIiGpsGsGKSTLl~~L~g 205 (746)
+..-+.+.||+|+|||++.+.|+.
T Consensus 44 ~~~~iLL~GppGtGKT~la~~iA~ 67 (256)
T d1lv7a_ 44 IPKGVLMVGPPGTGKTLLAKAIAG 67 (256)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCCCHHHHHHHH
T ss_conf 888678668998882289999999
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.64 E-value=0.019 Score=30.94 Aligned_cols=27 Identities=33% Similarity=0.512 Sum_probs=24.2
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 880999987998628999999973999
Q 004537 182 PGEVLALMGPSGSGKTTLLNLLSGRLM 208 (746)
Q Consensus 182 ~Ge~~aIiGpsGsGKSTLl~~L~gr~~ 208 (746)
.|.++++-|+.||||||+.+.|+.++.
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~ 28 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQ 28 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 768999989988869999999999997
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=93.62 E-value=0.023 Score=30.36 Aligned_cols=22 Identities=41% Similarity=0.717 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999879986289999999739
Q 004537 185 VLALMGPSGSGKTTLLNLLSGR 206 (746)
Q Consensus 185 ~~aIiGpsGsGKSTLl~~L~gr 206 (746)
-+.+.||+|+||||+.++|+..
T Consensus 37 ~~L~~GPpGtGKT~lA~~la~~ 58 (238)
T d1in4a2 37 HVLLAGPPGLGKTTLAHIIASE 58 (238)
T ss_dssp CEEEESSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 4898799997388999999850
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=93.56 E-value=0.03 Score=29.65 Aligned_cols=25 Identities=36% Similarity=0.542 Sum_probs=20.7
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8809999879986289999999739
Q 004537 182 PGEVLALMGPSGSGKTTLLNLLSGR 206 (746)
Q Consensus 182 ~Ge~~aIiGpsGsGKSTLl~~L~gr 206 (746)
.+.+++++||+|+||||.+-=|+.+
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~ 29 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRY 29 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 9779999899999889999999999
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=93.49 E-value=0.011 Score=32.45 Aligned_cols=40 Identities=18% Similarity=0.247 Sum_probs=29.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEEECCEECCHHCCCCEEEEECCCCCC
Q ss_conf 999987998628999999973999999741899988707921027389990388679
Q 004537 185 VLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLF 241 (746)
Q Consensus 185 ~~aIiGpsGsGKSTLl~~L~gr~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~d~l~ 241 (746)
++||.|+|||||||+.+.|...+. . . .-.+..+.+|+.+-
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~~--~-~--------------~v~~~iI~~Dsfyr 45 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIFR--R-E--------------GVKAVSIEGDAFHR 45 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHHH--H-H--------------TCCEEEEEGGGGBS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH--H-C--------------CCCEEEEECCCCCC
T ss_conf 999989997809999999999971--5-6--------------99769994777875
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=93.46 E-value=0.066 Score=27.32 Aligned_cols=33 Identities=30% Similarity=0.285 Sum_probs=25.7
Q ss_pred CEECEEEEEECCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 0021279994880999987998628999999973
Q 004537 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSG 205 (746)
Q Consensus 172 iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~L~g 205 (746)
.++.....+ .|.-+.|.|+||+|||||.-.+..
T Consensus 5 ~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~~ 37 (177)
T d1knxa2 5 QIHGVLLEV-FGVGVLLTGRSGIGKSECALDLIN 37 (177)
T ss_dssp EEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred EEEEEEEEE-CCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 178999999-999999981899998999999998
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=93.41 E-value=0.01 Score=32.80 Aligned_cols=23 Identities=35% Similarity=0.520 Sum_probs=20.3
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 09999879986289999999739
Q 004537 184 EVLALMGPSGSGKTTLLNLLSGR 206 (746)
Q Consensus 184 e~~aIiGpsGsGKSTLl~~L~gr 206 (746)
-.++|+|++++|||||+|.|.+.
T Consensus 17 ~~I~lvG~~NvGKSSL~n~L~~~ 39 (188)
T d1puia_ 17 IEVAFAGRSNAGKSSALNTLTNQ 39 (188)
T ss_dssp EEEEEEECTTSSHHHHHTTTCCC
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
T ss_conf 78999889999899999998589
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=93.29 E-value=0.029 Score=29.70 Aligned_cols=21 Identities=38% Similarity=0.751 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999987998628999999973
Q 004537 185 VLALMGPSGSGKTTLLNLLSG 205 (746)
Q Consensus 185 ~~aIiGpsGsGKSTLl~~L~g 205 (746)
++||+|...+|||||++.|.+
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~ 27 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRG 27 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHH
T ss_conf 799996998549999999982
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=93.18 E-value=0.028 Score=29.81 Aligned_cols=44 Identities=25% Similarity=0.483 Sum_probs=30.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEEECCEECCHHCCCCEEEEECC
Q ss_conf 99998799862899999997399999974189998870792102738999038
Q 004537 185 VLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQD 237 (746)
Q Consensus 185 ~~aIiGpsGsGKSTLl~~L~gr~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~ 237 (746)
=+.++||+|+|||-|.+.|+..+.-|. +..+.. ...+.|||-.|
T Consensus 51 NILliGPTGvGKTlLAr~LAk~l~VPF----v~~daT-----~fTeaGYvG~D 94 (443)
T d1g41a_ 51 NILMIGPTGVGKTEIARRLAKLANAPF----IKVEAT-----KFTEVGYVGKE 94 (443)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTTCCE----EEEEGG-----GGC----CCCC
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCCE----EEEECC-----EEEECCEEECC
T ss_conf 479989999889999999998738988----986255-----11411111044
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=93.15 E-value=0.034 Score=29.27 Aligned_cols=25 Identities=36% Similarity=0.469 Sum_probs=20.9
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8809999879986289999999739
Q 004537 182 PGEVLALMGPSGSGKTTLLNLLSGR 206 (746)
Q Consensus 182 ~Ge~~aIiGpsGsGKSTLl~~L~gr 206 (746)
|-.-+.+.||+|+|||++.+.|+..
T Consensus 39 p~~~vLL~GppGtGKT~la~alA~~ 63 (246)
T d1d2na_ 39 PLVSVLLEGPPHSGKTALAAKIAEE 63 (246)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHC
T ss_conf 9807998896999889999998620
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.05 E-value=0.028 Score=29.82 Aligned_cols=28 Identities=29% Similarity=0.576 Sum_probs=22.7
Q ss_pred EECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9488099998799862899999997399
Q 004537 180 VNPGEVLALMGPSGSGKTTLLNLLSGRL 207 (746)
Q Consensus 180 i~~Ge~~aIiGpsGsGKSTLl~~L~gr~ 207 (746)
+++..-+.+.||+|+|||+|.+.+++.+
T Consensus 38 ~~~~~giLL~Gp~GtGKT~l~~ala~~~ 65 (265)
T d1r7ra3 38 MTPSKGVLFYGPPGCGKTLLAKAIANEC 65 (265)
T ss_dssp CCCCCEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHH
T ss_conf 9988757887899876304778878771
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=93.05 E-value=0.039 Score=28.87 Aligned_cols=25 Identities=32% Similarity=0.332 Sum_probs=21.5
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8099998799862899999997399
Q 004537 183 GEVLALMGPSGSGKTTLLNLLSGRL 207 (746)
Q Consensus 183 Ge~~aIiGpsGsGKSTLl~~L~gr~ 207 (746)
...+.|.||+|+||||+++.++..+
T Consensus 43 ~~~lll~GppGtGKT~l~~~l~~~l 67 (276)
T d1fnna2 43 YPRATLLGRPGTGKTVTLRKLWELY 67 (276)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHH
T ss_conf 8816888989998999999999997
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=93.04 E-value=0.029 Score=29.70 Aligned_cols=23 Identities=30% Similarity=0.390 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998799862899999997399
Q 004537 185 VLALMGPSGSGKTTLLNLLSGRL 207 (746)
Q Consensus 185 ~~aIiGpsGsGKSTLl~~L~gr~ 207 (746)
.++++|.+|+|||||++-|.+..
T Consensus 17 kI~vvG~~~~GKSsLi~rl~~~~ 39 (177)
T d1zj6a1 17 KVIIVGLDNAGKTTILYQFSMNE 39 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999989899999996688
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=93.03 E-value=0.031 Score=29.53 Aligned_cols=21 Identities=48% Similarity=0.809 Sum_probs=18.8
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999879986289999999739
Q 004537 186 LALMGPSGSGKTTLLNLLSGR 206 (746)
Q Consensus 186 ~aIiGpsGsGKSTLl~~L~gr 206 (746)
+.+.||+|+||||+.+++++.
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~ 58 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHE 58 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 898897998788899999998
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=92.99 E-value=0.079 Score=26.80 Aligned_cols=34 Identities=26% Similarity=0.210 Sum_probs=25.4
Q ss_pred CEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 00212799948809999879986289999999739
Q 004537 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGR 206 (746)
Q Consensus 172 iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~L~gr 206 (746)
.|+. +...-.|.-+++.|+||+|||||.-.+..+
T Consensus 4 ~lH~-~~v~~~g~gvl~~G~sG~GKStlal~l~~~ 37 (176)
T d1kkma_ 4 SMHG-VLVDIYGLGVLITGDSGVGKSETALELVQR 37 (176)
T ss_dssp EEEE-EEEEETTEEEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEE-EEEEECCEEEEEEECCCCCHHHHHHHHHHC
T ss_conf 2899-999999999999808999989999999985
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=92.93 E-value=0.036 Score=29.09 Aligned_cols=20 Identities=50% Similarity=0.808 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99998799862899999997
Q 004537 185 VLALMGPSGSGKTTLLNLLS 204 (746)
Q Consensus 185 ~~aIiGpsGsGKSTLl~~L~ 204 (746)
++||.|+.||||||+.+.+.
T Consensus 4 iIgITG~igSGKStv~~~l~ 23 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFT 23 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99988888788999999999
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.90 E-value=0.04 Score=28.81 Aligned_cols=43 Identities=30% Similarity=0.475 Sum_probs=30.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEEECCEECCHHCCCCEEEEECCCCCC
Q ss_conf 999987998628999999973999999741899988707921027389990388679
Q 004537 185 VLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLF 241 (746)
Q Consensus 185 ~~aIiGpsGsGKSTLl~~L~gr~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~d~l~ 241 (746)
+++|-|+.|||||||.+.|.-.+... ......+..+..||...
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~L~~~--------------~~~~~~v~~iS~DdfY~ 71 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNHLMEK--------------YGGEKSIGYASIDDFYL 71 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHH--------------HGGGSCEEEEEGGGGBC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHH--------------HCCCCCEEEECCCCCCC
T ss_conf 99837998788999999999999987--------------27786067635677778
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=92.85 E-value=0.046 Score=28.41 Aligned_cols=23 Identities=39% Similarity=0.535 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998799862899999997399
Q 004537 185 VLALMGPSGSGKTTLLNLLSGRL 207 (746)
Q Consensus 185 ~~aIiGpsGsGKSTLl~~L~gr~ 207 (746)
.++++|++|+|||||++.+.+..
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~~~ 26 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIASGQ 26 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999989899999997197
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.74 E-value=0.038 Score=28.94 Aligned_cols=21 Identities=33% Similarity=0.667 Sum_probs=19.0
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999879986289999999739
Q 004537 186 LALMGPSGSGKTTLLNLLSGR 206 (746)
Q Consensus 186 ~aIiGpsGsGKSTLl~~L~gr 206 (746)
+.+-||+|+||||++++++..
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~ 56 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKE 56 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 999899999849999999999
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=92.54 E-value=0.043 Score=28.59 Aligned_cols=23 Identities=39% Similarity=0.697 Sum_probs=20.0
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 09999879986289999999739
Q 004537 184 EVLALMGPSGSGKTTLLNLLSGR 206 (746)
Q Consensus 184 e~~aIiGpsGsGKSTLl~~L~gr 206 (746)
.-+.+.||+|+|||+|.+.|+..
T Consensus 43 ~giLl~GppGtGKT~la~aia~~ 65 (247)
T d1ixza_ 43 KGVLLVGPPGVGKTHLARAVAGE 65 (247)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
T ss_conf 64887668988835999999987
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=92.50 E-value=0.011 Score=32.65 Aligned_cols=22 Identities=36% Similarity=0.564 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999879986289999999739
Q 004537 185 VLALMGPSGSGKTTLLNLLSGR 206 (746)
Q Consensus 185 ~~aIiGpsGsGKSTLl~~L~gr 206 (746)
.++++|.+++|||||+|.|.|.
T Consensus 2 kI~liG~~n~GKSSLin~l~g~ 23 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNE 23 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999999999999999589
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=92.45 E-value=0.065 Score=27.38 Aligned_cols=28 Identities=36% Similarity=0.600 Sum_probs=25.1
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 9994880999987998628999999973
Q 004537 178 GSVNPGEVLALMGPSGSGKTTLLNLLSG 205 (746)
Q Consensus 178 ~~i~~Ge~~aIiGpsGsGKSTLl~~L~g 205 (746)
|=+++|.++.|.||+|+|||||.--++.
T Consensus 49 GGi~~g~itei~G~~gsGKTtl~l~~~~ 76 (263)
T d1u94a1 49 GGLPMGRIVEIYGPESSGKTTLTLQVIA 76 (263)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHH
T ss_conf 9966735899805777478999999999
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.43 E-value=0.048 Score=28.25 Aligned_cols=23 Identities=30% Similarity=0.589 Sum_probs=19.9
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 09999879986289999999739
Q 004537 184 EVLALMGPSGSGKTTLLNLLSGR 206 (746)
Q Consensus 184 e~~aIiGpsGsGKSTLl~~L~gr 206 (746)
.-+.+.||+|+|||++.+.++..
T Consensus 39 ~giLL~GppGtGKT~l~~ala~~ 61 (258)
T d1e32a2 39 RGILLYGPPGTGKTLIARAVANE 61 (258)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCCHHHHHHHHHH
T ss_conf 64687669988830899999987
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.35 E-value=0.062 Score=27.51 Aligned_cols=22 Identities=32% Similarity=0.560 Sum_probs=19.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998799862899999997399
Q 004537 186 LALMGPSGSGKTTLLNLLSGRL 207 (746)
Q Consensus 186 ~aIiGpsGsGKSTLl~~L~gr~ 207 (746)
++++|++|+|||||++-+.+..
T Consensus 5 i~~vG~~~vGKSsLi~~~~~~~ 26 (175)
T d1ky3a_ 5 VIILGDSGVGKTSLMHRYVNDK 26 (175)
T ss_dssp EEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999969899999997098
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=92.23 E-value=0.055 Score=27.86 Aligned_cols=21 Identities=43% Similarity=0.681 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999987998628999999973
Q 004537 185 VLALMGPSGSGKTTLLNLLSG 205 (746)
Q Consensus 185 ~~aIiGpsGsGKSTLl~~L~g 205 (746)
+++|.|+.||||||..+.+..
T Consensus 5 iIgitG~igSGKStv~~~l~~ 25 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFAD 25 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999789886889999999998
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=92.03 E-value=0.049 Score=28.21 Aligned_cols=21 Identities=29% Similarity=0.471 Sum_probs=18.6
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999879986289999999739
Q 004537 186 LALMGPSGSGKTTLLNLLSGR 206 (746)
Q Consensus 186 ~aIiGpsGsGKSTLl~~L~gr 206 (746)
++++|.+|+|||||++-+.+.
T Consensus 8 i~vvG~~~vGKTsLi~~l~~~ 28 (169)
T d3raba_ 8 ILIIGNSSVGKTSFLFRYADD 28 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999991989999999739
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=92.00 E-value=0.069 Score=27.21 Aligned_cols=148 Identities=13% Similarity=0.181 Sum_probs=68.7
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEEECCEECCHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHCCCCCCC
Q ss_conf 80999987998628999999973999999741899988707921027389990388679999999999998740699877
Q 004537 183 GEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTL 262 (746)
Q Consensus 183 Ge~~aIiGpsGsGKSTLl~~L~gr~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~d~l~~~lTV~E~l~f~a~~~~~~~~ 262 (746)
-.+++++||+|+||||.+-=|+.++. .. .++++.+.=|..-.. -+
T Consensus 11 p~vi~lvGptGvGKTTTiAKLAa~~~---~~--------------~~kV~lit~Dt~R~g--A~---------------- 55 (213)
T d1vmaa2 11 PFVIMVVGVNGTGKTTSCGKLAKMFV---DE--------------GKSVVLAAADTFRAA--AI---------------- 55 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH---HT--------------TCCEEEEEECTTCHH--HH----------------
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHH---HC--------------CCCEEEEEECCCCCC--HH----------------
T ss_conf 98999989999988999999999999---77--------------990699960133420--46----------------
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 69999999999998839974222223585566789889899999999963997899949999999999999999999999
Q 004537 263 TKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA 342 (746)
Q Consensus 263 ~~~~~~~~v~~~l~~lgL~~~~~t~ig~~~~~~LSGGqrqRvsIA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~ 342 (746)
+....+-+.++++-.... .+-.--.-.+-..+.+...+-+++|.|-|= -.+... +.++.++++.
T Consensus 56 ------eQL~~~a~~l~i~~~~~~-------~~~d~~~~~~~~~~~~~~~~~d~ilIDTaG--r~~~d~-~~~~el~~~~ 119 (213)
T d1vmaa2 56 ------EQLKIWGERVGATVISHS-------EGADPAAVAFDAVAHALARNKDVVIIDTAG--RLHTKK-NLMEELRKVH 119 (213)
T ss_dssp ------HHHHHHHHHHTCEEECCS-------TTCCHHHHHHHHHHHHHHTTCSEEEEEECC--CCSCHH-HHHHHHHHHH
T ss_pred ------HHHHHHHHHCCCCCCCCC-------CCCCHHHHHHHHHHHHHHCCCCEEEEECCC--CCCCHH-HHHHHHHHHH
T ss_conf ------788877643276410367-------777689987887899987699989982455--330168-8889988887
Q ss_pred HC-CCEEEEEECCCCHHHHHCCCEEEEEECCEEEEECCHHHHHHHHHHCCCC
Q ss_conf 78-9779999568890888506779997097699952977899999853999
Q 004537 343 EA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGCS 393 (746)
Q Consensus 343 ~~-g~Tii~~~Hq~s~~i~~~~D~i~lL~~G~iv~~G~~~~~~~yF~~~G~~ 393 (746)
+. +. +.+. .....+++|+... -.....++..+|..++..
T Consensus 120 ~~~~~------~~~~----~p~~~~LVl~a~~--~~~~~~~~~~~~~~~~~~ 159 (213)
T d1vmaa2 120 RVVKK------KIPD----APHETLLVIDATT--GQNGLVQAKIFKEAVNVT 159 (213)
T ss_dssp HHGGG------TCTT----CCSEEEEEEEGGG--HHHHHHHHHHHHHHSCCC
T ss_pred HHHHH------CCCC----CCCEEEEEECCCC--CCCHHHHHHHHCCCCCCC
T ss_conf 66420------2566----6502578621234--843355656540122786
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=91.95 E-value=0.041 Score=28.71 Aligned_cols=22 Identities=41% Similarity=0.616 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999879986289999999739
Q 004537 185 VLALMGPSGSGKTTLLNLLSGR 206 (746)
Q Consensus 185 ~~aIiGpsGsGKSTLl~~L~gr 206 (746)
.++++|++|+|||||++-+.+.
T Consensus 18 kI~vvG~~~vGKSsLi~~l~~~ 39 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQLASE 39 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999998999999999648
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=91.92 E-value=0.061 Score=27.55 Aligned_cols=23 Identities=43% Similarity=0.749 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998799862899999997399
Q 004537 185 VLALMGPSGSGKTTLLNLLSGRL 207 (746)
Q Consensus 185 ~~aIiGpsGsGKSTLl~~L~gr~ 207 (746)
+++|-|.-||||||+++.|..++
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l 24 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998998789999999999999
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=91.88 E-value=0.071 Score=27.13 Aligned_cols=24 Identities=38% Similarity=0.555 Sum_probs=20.9
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 880999987998628999999973
Q 004537 182 PGEVLALMGPSGSGKTTLLNLLSG 205 (746)
Q Consensus 182 ~Ge~~aIiGpsGsGKSTLl~~L~g 205 (746)
|...+.++||+|+|||.|.+.|+.
T Consensus 51 p~~~~lf~Gp~GvGKT~lak~la~ 74 (315)
T d1r6bx3 51 PVGSFLFAGPTGVGKTEVTVQLSK 74 (315)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCHHHHHHHHHHH
T ss_conf 765899977875006999999986
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.85 E-value=0.073 Score=27.06 Aligned_cols=22 Identities=36% Similarity=0.632 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999879986289999999739
Q 004537 185 VLALMGPSGSGKTTLLNLLSGR 206 (746)
Q Consensus 185 ~~aIiGpsGsGKSTLl~~L~gr 206 (746)
.++++|++|+|||||++-+.+.
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~~ 27 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTRN 27 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999990989999999829
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.85 E-value=0.057 Score=27.77 Aligned_cols=20 Identities=35% Similarity=0.512 Sum_probs=18.3
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99987998628999999973
Q 004537 186 LALMGPSGSGKTTLLNLLSG 205 (746)
Q Consensus 186 ~aIiGpsGsGKSTLl~~L~g 205 (746)
+.+-||+|+||||+.++++.
T Consensus 39 ~ll~Gp~G~GKTt~a~~la~ 58 (224)
T d1sxjb2 39 MIISGMPGIGKTTSVHCLAH 58 (224)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCCHHHHHHHHH
T ss_conf 99988999870546999999
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=91.81 E-value=0.11 Score=25.88 Aligned_cols=34 Identities=29% Similarity=0.219 Sum_probs=25.8
Q ss_pred CEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 00212799948809999879986289999999739
Q 004537 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGR 206 (746)
Q Consensus 172 iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~L~gr 206 (746)
-++. ++..-.|.-+.|.|+||+|||||.-.+..|
T Consensus 5 ~~H~-~~v~~~g~gvli~G~sg~GKS~la~~l~~~ 38 (169)
T d1ko7a2 5 SLHG-VLVDVYGVGVLITGDSGIGKSETALELIKR 38 (169)
T ss_dssp EEES-EEEEETTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred EEEE-EEEEECCEEEEEEECCCCCHHHHHHHHHHC
T ss_conf 4889-999999999999808999999999999984
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=91.81 E-value=0.087 Score=26.54 Aligned_cols=26 Identities=31% Similarity=0.598 Sum_probs=21.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf 99998799862899999997399999
Q 004537 185 VLALMGPSGSGKTTLLNLLSGRLMEP 210 (746)
Q Consensus 185 ~~aIiGpsGsGKSTLl~~L~gr~~~~ 210 (746)
.++++|.-+||||||+|.|.|.-..|
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~~lP 51 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRDFLP 51 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSCCCC
T ss_pred EEEEEECCCCCHHHHHHHHHCCCCCC
T ss_conf 59998189897999999996899788
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.77 E-value=0.049 Score=28.22 Aligned_cols=34 Identities=41% Similarity=0.615 Sum_probs=27.4
Q ss_pred CCEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 4002127999488099998799862899999997399
Q 004537 171 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRL 207 (746)
Q Consensus 171 ~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl~~L~gr~ 207 (746)
.+|+.++. |=-+++|+||-++|||||||.|.|..
T Consensus 23 ~~l~~~~~---~v~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 23 KILSAITQ---PMVVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp HHHHTCCS---BEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred HHHHCCCC---CEEEEEEECCCCCCHHHHHHHHCCCC
T ss_conf 99970799---87999988999997999999980998
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.76 E-value=0.063 Score=27.48 Aligned_cols=21 Identities=43% Similarity=0.591 Sum_probs=18.8
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999879986289999999739
Q 004537 186 LALMGPSGSGKTTLLNLLSGR 206 (746)
Q Consensus 186 ~aIiGpsGsGKSTLl~~L~gr 206 (746)
++|+|++|+|||||++-+.+.
T Consensus 8 i~ivG~~~vGKTsLi~~l~~~ 28 (186)
T d2f7sa1 8 LLALGDSGVGKTTFLYRYTDN 28 (186)
T ss_dssp EEEESCTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999991989999999619
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=91.67 E-value=0.077 Score=26.88 Aligned_cols=28 Identities=29% Similarity=0.293 Sum_probs=24.7
Q ss_pred EEECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9948809999879986289999999739
Q 004537 179 SVNPGEVLALMGPSGSGKTTLLNLLSGR 206 (746)
Q Consensus 179 ~i~~Ge~~aIiGpsGsGKSTLl~~L~gr 206 (746)
..+||.++++-|+=||||||+.+.++.-
T Consensus 29 ~~~~g~ii~L~G~LGaGKTtfvr~~~~~ 56 (158)
T d1htwa_ 29 HTEKAIMVYLNGDLGAGKTTLTRGMLQG 56 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 5799829999668776588999998764
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.63 E-value=0.071 Score=27.13 Aligned_cols=22 Identities=32% Similarity=0.462 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999879986289999999739
Q 004537 185 VLALMGPSGSGKTTLLNLLSGR 206 (746)
Q Consensus 185 ~~aIiGpsGsGKSTLl~~L~gr 206 (746)
.++++|.+|+|||||++-+.+.
T Consensus 5 Ki~viG~~~vGKTsli~~l~~~ 26 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999997998999999999809
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=91.55 E-value=0.093 Score=26.34 Aligned_cols=23 Identities=30% Similarity=0.560 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998799862899999997399
Q 004537 185 VLALMGPSGSGKTTLLNLLSGRL 207 (746)
Q Consensus 185 ~~aIiGpsGsGKSTLl~~L~gr~ 207 (746)
.++++|.-.||||||+|.|.|.-
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 69997689897999999996898
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=91.52 E-value=0.078 Score=26.84 Aligned_cols=24 Identities=33% Similarity=0.542 Sum_probs=19.8
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 099998799862899999997399
Q 004537 184 EVLALMGPSGSGKTTLLNLLSGRL 207 (746)
Q Consensus 184 e~~aIiGpsGsGKSTLl~~L~gr~ 207 (746)
.+++++||+|+||||.+-=|+.++
T Consensus 10 ~vi~lvGptGvGKTTTiAKLA~~~ 33 (211)
T d2qy9a2 10 FVILMVGVNGVGKTTTIGKLARQF 33 (211)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 799998999999899999999999
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=91.50 E-value=0.065 Score=27.36 Aligned_cols=111 Identities=17% Similarity=0.180 Sum_probs=55.2
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEEECCEECCHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHCCCCCC
Q ss_conf 88099998799862899999997399999974189998870792102738999038867999999999999874069987
Q 004537 182 PGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNT 261 (746)
Q Consensus 182 ~Ge~~aIiGpsGsGKSTLl~~L~gr~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~d~l~~~lTV~E~l~f~a~~~~~~~ 261 (746)
.-.+++++||+|+||||.+-=|+.++. . ..++++.+.=|..-.. -+ |.
T Consensus 11 ~p~vi~lvGptGvGKTTTiAKLA~~~~---~--------------~g~kV~lit~Dt~R~g--a~-eQ------------ 58 (211)
T d1j8yf2 11 IPYVIMLVGVQGTGKATTAGKLAYFYK---K--------------KGFKVGLVGADVYRPA--AL-EQ------------ 58 (211)
T ss_dssp SSEEEEEECSCCC----HHHHHHHHHH---H--------------TTCCEEEEECCCSSHH--HH-HH------------
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH---H--------------CCCCEEEEEEECCCCC--HH-HH------------
T ss_conf 998999989999998999999999999---7--------------7993699972023551--56-78------------
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHH-HHHHHHHHHH
Q ss_conf 769999999999998839974222223585566789889899999999963997899949999999999-9999999999
Q 004537 262 LTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTT-ALRIVQMLQD 340 (746)
Q Consensus 262 ~~~~~~~~~v~~~l~~lgL~~~~~t~ig~~~~~~LSGGqrqRvsIA~aL~~~P~iLlLDEPTsgLD~~s-~~~i~~~L~~ 340 (746)
....-+.++++-.... ....+. +-.+=++..+...+-+++|.| |.|..+.. ....++.+++
T Consensus 59 ---------L~~~a~~l~v~~~~~~-----~~~~~~--~~~~~a~~~~~~~~~d~IlID--TaGr~~~~~~~~~~~el~~ 120 (211)
T d1j8yf2 59 ---------LQQLGQQIGVPVYGEP-----GEKDVV--GIAKRGVEKFLSEKMEIIIVD--TAGRHGYGEEAALLEEMKN 120 (211)
T ss_dssp ---------HHHHHHHHTCCEECCT-----TCCCHH--HHHHHHHHHHHHTTCSEEEEE--CCCSCCTTCHHHHHHHHHH
T ss_pred ---------HHHHCCCCCCCEEECC-----CCHHHH--HHHHHHHHHHHCCCCCEEEEE--CCCCCCCCHHHHHHHHHHH
T ss_conf ---------9874014684223024-----410244--789999987402677369985--3776763136678999999
Q ss_pred HH
Q ss_conf 99
Q 004537 341 IA 342 (746)
Q Consensus 341 l~ 342 (746)
+.
T Consensus 121 ~~ 122 (211)
T d1j8yf2 121 IY 122 (211)
T ss_dssp HH
T ss_pred HH
T ss_conf 98
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.33 E-value=0.083 Score=26.67 Aligned_cols=21 Identities=33% Similarity=0.621 Sum_probs=18.0
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999879986289999999739
Q 004537 186 LALMGPSGSGKTTLLNLLSGR 206 (746)
Q Consensus 186 ~aIiGpsGsGKSTLl~~L~gr 206 (746)
++++|++|+|||||++-+.+.
T Consensus 9 I~vvG~~~vGKSSli~~~~~~ 29 (174)
T d1wmsa_ 9 VILLGDGGVGKSSLMNRYVTN 29 (174)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999997999999999849
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.28 E-value=0.065 Score=27.35 Aligned_cols=21 Identities=14% Similarity=0.415 Sum_probs=18.0
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999987998628999999973
Q 004537 185 VLALMGPSGSGKTTLLNLLSG 205 (746)
Q Consensus 185 ~~aIiGpsGsGKSTLl~~L~g 205 (746)
.++++|++|+|||||++-+.+
T Consensus 4 Kv~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899598999999982
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=91.24 E-value=0.066 Score=27.31 Aligned_cols=21 Identities=19% Similarity=0.382 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999987998628999999973
Q 004537 185 VLALMGPSGSGKTTLLNLLSG 205 (746)
Q Consensus 185 ~~aIiGpsGsGKSTLl~~L~g 205 (746)
-+||+|.+.+|||||+|.|+|
T Consensus 2 ~v~lvG~pn~GKStlfn~lt~ 22 (319)
T d1wxqa1 2 EIGVVGKPNVGKSTFFSAATL 22 (319)
T ss_dssp EEEEEECTTSSHHHHHHHHHC
T ss_pred CEEEECCCCCCHHHHHHHHHC
T ss_conf 176889999989999999978
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.05 E-value=0.077 Score=26.90 Aligned_cols=41 Identities=10% Similarity=0.208 Sum_probs=25.4
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 9789994999999999999999999999978977999956889
Q 004537 314 PSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPS 356 (746)
Q Consensus 314 P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~Tii~~~Hq~s 356 (746)
..++++||.- .+....+..+.+.+....+ ...++++++++.
T Consensus 100 ~kiiiiDe~d-~~~~~~~~~Ll~~le~~~~-~~~~~~~~~~~~ 140 (227)
T d1sxjc2 100 FKLIILDEAD-AMTNAAQNALRRVIERYTK-NTRFCVLANYAH 140 (227)
T ss_dssp CEEEEETTGG-GSCHHHHHHHHHHHHHTTT-TEEEEEEESCGG
T ss_pred EEEEEEECCC-CCHHHHHHHHHHHHHHCCC-CEEECCCCCCHH
T ss_conf 1899996632-0002378999988631120-023201267087
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.01 E-value=0.082 Score=26.71 Aligned_cols=23 Identities=30% Similarity=0.589 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998799862899999997399
Q 004537 185 VLALMGPSGSGKTTLLNLLSGRL 207 (746)
Q Consensus 185 ~~aIiGpsGsGKSTLl~~L~gr~ 207 (746)
.++++|.+|+|||||++.+.+..
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~~ 25 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGVE 25 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99998989939999999981885
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=91.00 E-value=0.074 Score=26.98 Aligned_cols=22 Identities=36% Similarity=0.659 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999879986289999999739
Q 004537 185 VLALMGPSGSGKTTLLNLLSGR 206 (746)
Q Consensus 185 ~~aIiGpsGsGKSTLl~~L~gr 206 (746)
.++++|.+|+|||||++-+.+.
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~~ 25 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVNK 25 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999991989999999719
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.92 E-value=0.075 Score=26.95 Aligned_cols=21 Identities=29% Similarity=0.534 Sum_probs=18.2
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999987998628999999973
Q 004537 185 VLALMGPSGSGKTTLLNLLSG 205 (746)
Q Consensus 185 ~~aIiGpsGsGKSTLl~~L~g 205 (746)
.++++|++|+|||||++-+.+
T Consensus 5 KivvvG~~~vGKTsli~r~~~ 25 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFTD 25 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999399999999962
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.92 E-value=0.084 Score=26.61 Aligned_cols=22 Identities=27% Similarity=0.468 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999879986289999999739
Q 004537 185 VLALMGPSGSGKTTLLNLLSGR 206 (746)
Q Consensus 185 ~~aIiGpsGsGKSTLl~~L~gr 206 (746)
.++++|.+|+|||||++-+.+.
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~~ 25 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVKG 25 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999998997989999999709
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.91 E-value=0.083 Score=26.65 Aligned_cols=22 Identities=36% Similarity=0.522 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999879986289999999739
Q 004537 185 VLALMGPSGSGKTTLLNLLSGR 206 (746)
Q Consensus 185 ~~aIiGpsGsGKSTLl~~L~gr 206 (746)
.++++|.+|+|||||++-+.+.
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~~ 25 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVED 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999996789999999868
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.86 E-value=0.065 Score=27.38 Aligned_cols=44 Identities=9% Similarity=0.150 Sum_probs=29.1
Q ss_pred HCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCH
Q ss_conf 3997899949999999999999999999999789779999568890
Q 004537 312 INPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSS 357 (746)
Q Consensus 312 ~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~Tii~~~Hq~s~ 357 (746)
.+..++++||.-. |.......+.+.+..-. ....+|++++.+..
T Consensus 130 ~~~~iiiide~d~-l~~~~~~~l~~~~e~~~-~~~~~Il~tn~~~~ 173 (252)
T d1sxje2 130 HRYKCVIINEANS-LTKDAQAALRRTMEKYS-KNIRLIMVCDSMSP 173 (252)
T ss_dssp -CCEEEEEECTTS-SCHHHHHHHHHHHHHST-TTEEEEEEESCSCS
T ss_pred CCCEEEEECCCCC-CCCCCCHHHHCCCCCCC-CCCCCEEEECCCCC
T ss_conf 8724999424333-45431112210022135-66430001021110
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.84 E-value=0.067 Score=27.27 Aligned_cols=23 Identities=22% Similarity=0.328 Sum_probs=19.4
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 09999879986289999999739
Q 004537 184 EVLALMGPSGSGKTTLLNLLSGR 206 (746)
Q Consensus 184 e~~aIiGpsGsGKSTLl~~L~gr 206 (746)
-.++|+|++|+|||||++-+.+.
T Consensus 5 ~Kv~liG~~~vGKTsLl~~~~~~ 27 (167)
T d1xtqa1 5 RKIAILGYRSVGKSSLTIQFVEG 27 (167)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHHC
T ss_conf 38999998992989999999719
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.77 E-value=0.12 Score=25.71 Aligned_cols=23 Identities=22% Similarity=0.381 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998799862899999997399
Q 004537 185 VLALMGPSGSGKTTLLNLLSGRL 207 (746)
Q Consensus 185 ~~aIiGpsGsGKSTLl~~L~gr~ 207 (746)
.++++|.+|+|||||++-+.+..
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~~~ 27 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999989939999999997199
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.71 E-value=0.07 Score=27.14 Aligned_cols=21 Identities=48% Similarity=0.642 Sum_probs=18.4
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999879986289999999739
Q 004537 186 LALMGPSGSGKTTLLNLLSGR 206 (746)
Q Consensus 186 ~aIiGpsGsGKSTLl~~L~gr 206 (746)
++|+|++|+|||||++-+.+.
T Consensus 9 ivvvG~~~vGKTsli~~l~~~ 29 (194)
T d2bcgy1 9 LLLIGNSGVGKSCLLLRFSDD 29 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999990989999999619
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=90.56 E-value=0.058 Score=27.68 Aligned_cols=23 Identities=35% Similarity=0.537 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998799862899999997399
Q 004537 185 VLALMGPSGSGKTTLLNLLSGRL 207 (746)
Q Consensus 185 ~~aIiGpsGsGKSTLl~~L~gr~ 207 (746)
++.+.||+|+||||+++.++..+
T Consensus 48 ~l~l~GppGtGKT~l~~~l~~~l 70 (287)
T d1w5sa2 48 IYGSIGRVGIGKTTLAKFTVKRV 70 (287)
T ss_dssp EEECTTCCSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89967899989999999999998
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.48 E-value=0.076 Score=26.93 Aligned_cols=22 Identities=32% Similarity=0.566 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999879986289999999739
Q 004537 185 VLALMGPSGSGKTTLLNLLSGR 206 (746)
Q Consensus 185 ~~aIiGpsGsGKSTLl~~L~gr 206 (746)
.++++|.+|+|||||++.+.+.
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~~ 28 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQG 28 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999991989999999729
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=90.46 E-value=0.095 Score=26.27 Aligned_cols=31 Identities=23% Similarity=0.440 Sum_probs=26.3
Q ss_pred CEEEEEECCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 1279994880999987998628999999973
Q 004537 175 GITGSVNPGEVLALMGPSGSGKTTLLNLLSG 205 (746)
Q Consensus 175 ~vs~~i~~Ge~~aIiGpsGsGKSTLl~~L~g 205 (746)
|.=..+-.|+..+|.|++|+|||||+..|+.
T Consensus 35 D~l~PigrGQr~~I~g~~g~GKT~l~~~i~~ 65 (289)
T d1xpua3 35 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQ 65 (289)
T ss_dssp HHHSCCBTTCEEEEEECSSSSHHHHHHHHHH
T ss_pred EECCCCCCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 4125645787556867999887899999999
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.42 E-value=0.079 Score=26.80 Aligned_cols=22 Identities=27% Similarity=0.391 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999879986289999999739
Q 004537 185 VLALMGPSGSGKTTLLNLLSGR 206 (746)
Q Consensus 185 ~~aIiGpsGsGKSTLl~~L~gr 206 (746)
.++++|.+|+|||||++-+.+.
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~~ 28 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQS 28 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999999997999999999739
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.25 E-value=0.093 Score=26.34 Aligned_cols=22 Identities=32% Similarity=0.576 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999879986289999999739
Q 004537 185 VLALMGPSGSGKTTLLNLLSGR 206 (746)
Q Consensus 185 ~~aIiGpsGsGKSTLl~~L~gr 206 (746)
.++++|.+|+|||||++.+.+.
T Consensus 9 Ki~vvG~~~vGKTsli~~l~~~ 30 (177)
T d1x3sa1 9 KILIIGESGVGKSSLLLRFTDD 30 (177)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999998990889999999719
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.19 E-value=0.13 Score=25.44 Aligned_cols=21 Identities=29% Similarity=0.419 Sum_probs=18.4
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999879986289999999739
Q 004537 186 LALMGPSGSGKTTLLNLLSGR 206 (746)
Q Consensus 186 ~aIiGpsGsGKSTLl~~L~gr 206 (746)
++++|.+|+|||||++-+.+.
T Consensus 5 v~liG~~~vGKTsLl~~~~~~ 25 (165)
T d1z06a1 5 IIVIGDSNVGKTCLTYRFCAG 25 (165)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999992989999999739
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.19 E-value=0.11 Score=25.91 Aligned_cols=23 Identities=39% Similarity=0.686 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998799862899999997399
Q 004537 185 VLALMGPSGSGKTTLLNLLSGRL 207 (746)
Q Consensus 185 ~~aIiGpsGsGKSTLl~~L~gr~ 207 (746)
.++++|.+|+|||||++.+.+..
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~~ 27 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGVH 27 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999989929999999997286
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.07 E-value=0.13 Score=25.33 Aligned_cols=22 Identities=27% Similarity=0.557 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999879986289999999739
Q 004537 185 VLALMGPSGSGKTTLLNLLSGR 206 (746)
Q Consensus 185 ~~aIiGpsGsGKSTLl~~L~gr 206 (746)
.++|+|.+|+|||||++-+.+.
T Consensus 6 KivlvG~~~vGKTsli~~~~~~ 27 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFTEK 27 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999994989999999729
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=90.03 E-value=0.096 Score=26.23 Aligned_cols=39 Identities=31% Similarity=0.233 Sum_probs=28.9
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEE-ECCEECC
Q ss_conf 4880999987998628999999973999999741899-9887079
Q 004537 181 NPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSIT-YNDHPYS 224 (746)
Q Consensus 181 ~~Ge~~aIiGpsGsGKSTLl~~L~gr~~~~~~~G~I~-~~G~~~~ 224 (746)
+.+..+.+.||+|+|||++.+.|++.+ +|.+. +|+-+..
T Consensus 152 ~~~~~~~~~g~~~~gk~~~~~~~~~~~-----~~~~i~in~s~~r 191 (362)
T d1svma_ 152 PKKRYWLFKGPIDSGKTTLAAALLELC-----GGKALNVNLPLDR 191 (362)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHH-----CCEEECCSSCTTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHC-----CCCEEEEECCCHH
T ss_conf 976769998999988899999999985-----9978999774201
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=90.01 E-value=0.12 Score=25.55 Aligned_cols=25 Identities=28% Similarity=0.453 Sum_probs=20.8
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8809999879986289999999739
Q 004537 182 PGEVLALMGPSGSGKTTLLNLLSGR 206 (746)
Q Consensus 182 ~Ge~~aIiGpsGsGKSTLl~~L~gr 206 (746)
|...+.+.||+|+|||.|.+.|++.
T Consensus 122 ~~g~~l~~G~pG~GKT~la~ala~~ 146 (321)
T d1w44a_ 122 ASGMVIVTGKGNSGKTPLVHALGEA 146 (321)
T ss_dssp ESEEEEEECSSSSCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 8863888779985088999999998
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=89.95 E-value=0.11 Score=25.78 Aligned_cols=23 Identities=35% Similarity=0.528 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998799862899999997399
Q 004537 185 VLALMGPSGSGKTTLLNLLSGRL 207 (746)
Q Consensus 185 ~~aIiGpsGsGKSTLl~~L~gr~ 207 (746)
-+||+|.-.+|||||++.|.|..
T Consensus 7 nIaiiGhvd~GKSTL~~~L~g~~ 29 (195)
T d1kk1a3 7 NIGMVGHVDHGKTTLTKALTGVW 29 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEEECCCCCHHHHHHHHHHHH
T ss_conf 99999345884999999997034
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=89.89 E-value=0.054 Score=27.90 Aligned_cols=21 Identities=38% Similarity=0.562 Sum_probs=18.1
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999987998628999999973
Q 004537 185 VLALMGPSGSGKTTLLNLLSG 205 (746)
Q Consensus 185 ~~aIiGpsGsGKSTLl~~L~g 205 (746)
.++++|++|+|||||++-+.+
T Consensus 19 KI~lvG~~~vGKTsLi~~l~~ 39 (182)
T d1moza_ 19 RILILGLDGAGKTTILYRLQI 39 (182)
T ss_dssp EEEEEEETTSSHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999988999988733
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.67 E-value=0.11 Score=25.95 Aligned_cols=23 Identities=35% Similarity=0.417 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998799862899999997399
Q 004537 185 VLALMGPSGSGKTTLLNLLSGRL 207 (746)
Q Consensus 185 ~~aIiGpsGsGKSTLl~~L~gr~ 207 (746)
.+.|+|.+|+|||||++-+.+..
T Consensus 4 KivvvG~~~vGKTsLi~~~~~~~ 26 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSKDQ 26 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999989938899999997199
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=89.58 E-value=0.1 Score=26.09 Aligned_cols=21 Identities=19% Similarity=0.414 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999987998628999999973
Q 004537 185 VLALMGPSGSGKTTLLNLLSG 205 (746)
Q Consensus 185 ~~aIiGpsGsGKSTLl~~L~g 205 (746)
.++|+|.+.+|||||++.|++
T Consensus 12 kiGivG~Pn~GKSTlfnalT~ 32 (296)
T d1ni3a1 12 KTGIVGMPNVGKSTFFRAITK 32 (296)
T ss_dssp EEEEEECSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 799978999989999999977
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.57 E-value=0.12 Score=25.63 Aligned_cols=23 Identities=26% Similarity=0.299 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998799862899999997399
Q 004537 185 VLALMGPSGSGKTTLLNLLSGRL 207 (746)
Q Consensus 185 ~~aIiGpsGsGKSTLl~~L~gr~ 207 (746)
.++|+|.+|+|||||++-+.+..
T Consensus 7 KivviG~~~vGKTsli~~~~~~~ 29 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTTNA 29 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999999979999999997498
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=89.53 E-value=0.13 Score=25.40 Aligned_cols=22 Identities=50% Similarity=0.617 Sum_probs=19.0
Q ss_pred EEEEEECCCCCCHHHHHHHHHC
Q ss_conf 0999987998628999999973
Q 004537 184 EVLALMGPSGSGKTTLLNLLSG 205 (746)
Q Consensus 184 e~~aIiGpsGsGKSTLl~~L~g 205 (746)
+-++|+|+.|+|||||+..|..
T Consensus 3 RNv~iiGh~~~GKTtL~e~ll~ 24 (267)
T d2dy1a2 3 RTVALVGHAGSGKTTLTEALLY 24 (267)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 0999994889809999999999
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.49 E-value=0.13 Score=25.41 Aligned_cols=22 Identities=23% Similarity=0.499 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999879986289999999739
Q 004537 185 VLALMGPSGSGKTTLLNLLSGR 206 (746)
Q Consensus 185 ~~aIiGpsGsGKSTLl~~L~gr 206 (746)
.++|+|.+|+|||||++-+...
T Consensus 6 Ki~lvG~~~vGKTsli~rl~~~ 27 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFVED 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999998994999999999739
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.36 E-value=0.11 Score=25.97 Aligned_cols=20 Identities=30% Similarity=0.630 Sum_probs=18.1
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99987998628999999973
Q 004537 186 LALMGPSGSGKTTLLNLLSG 205 (746)
Q Consensus 186 ~aIiGpsGsGKSTLl~~L~g 205 (746)
++++|.+|+|||||++-+.+
T Consensus 8 I~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 8 FLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999999099999999970
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.35 E-value=0.11 Score=25.96 Aligned_cols=22 Identities=27% Similarity=0.427 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999879986289999999739
Q 004537 185 VLALMGPSGSGKTTLLNLLSGR 206 (746)
Q Consensus 185 ~~aIiGpsGsGKSTLl~~L~gr 206 (746)
.++++|.+|+|||||++-+.+.
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~~ 23 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMYD 23 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999998990989999999849
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=89.16 E-value=0.15 Score=24.92 Aligned_cols=27 Identities=37% Similarity=0.594 Sum_probs=23.7
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHH
Q ss_conf 999488099998799862899999997
Q 004537 178 GSVNPGEVLALMGPSGSGKTTLLNLLS 204 (746)
Q Consensus 178 ~~i~~Ge~~aIiGpsGsGKSTLl~~L~ 204 (746)
+=++.|.++.+.||+|+|||||.-.++
T Consensus 55 gG~~~g~i~e~~G~~~~GKT~l~l~~~ 81 (269)
T d1mo6a1 55 GGLPRGRVIEIYGPESSGKTTVALHAV 81 (269)
T ss_dssp SSBCSSSEEEEECSSSSSHHHHHHHHH
T ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHH
T ss_conf 986663369996488748899999999
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.12 E-value=0.15 Score=25.02 Aligned_cols=24 Identities=29% Similarity=0.477 Sum_probs=21.2
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 099998799862899999997399
Q 004537 184 EVLALMGPSGSGKTTLLNLLSGRL 207 (746)
Q Consensus 184 e~~aIiGpsGsGKSTLl~~L~gr~ 207 (746)
+.++|=|+-||||||+++.|+-.+
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l 26 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 199998998885999999999987
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=89.09 E-value=0.13 Score=25.35 Aligned_cols=21 Identities=33% Similarity=0.509 Sum_probs=18.0
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999987998628999999973
Q 004537 185 VLALMGPSGSGKTTLLNLLSG 205 (746)
Q Consensus 185 ~~aIiGpsGsGKSTLl~~L~g 205 (746)
.+.++|.+|+|||||++-+..
T Consensus 8 KilllG~~~vGKTsll~~~~~ 28 (221)
T d1azta2 8 RLLLLGAGESGKSTIVKQMRI 28 (221)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 799998999988999998950
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.07 E-value=0.13 Score=25.30 Aligned_cols=22 Identities=27% Similarity=0.372 Sum_probs=18.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999879986289999999739
Q 004537 185 VLALMGPSGSGKTTLLNLLSGR 206 (746)
Q Consensus 185 ~~aIiGpsGsGKSTLl~~L~gr 206 (746)
.++|+|.+|+|||||++-+.+.
T Consensus 5 KivlvG~~~vGKTsLi~r~~~~ 26 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYCEN 26 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999993989999999829
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=88.99 E-value=0.17 Score=24.54 Aligned_cols=22 Identities=27% Similarity=0.425 Sum_probs=19.9
Q ss_pred EEEEEECCCCCCHHHHHHHHHC
Q ss_conf 0999987998628999999973
Q 004537 184 EVLALMGPSGSGKTTLLNLLSG 205 (746)
Q Consensus 184 e~~aIiGpsGsGKSTLl~~L~g 205 (746)
.+++|.|+-||||||..+.|..
T Consensus 2 ~iIgiTG~igSGKsTva~~l~e 23 (241)
T d1deka_ 2 KLIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 8999979999889999999998
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=88.98 E-value=0.19 Score=24.29 Aligned_cols=28 Identities=32% Similarity=0.603 Sum_probs=25.6
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 9994880999987998628999999973
Q 004537 178 GSVNPGEVLALMGPSGSGKTTLLNLLSG 205 (746)
Q Consensus 178 ~~i~~Ge~~aIiGpsGsGKSTLl~~L~g 205 (746)
|=++.|.++-+-||+|+|||||.-.++.
T Consensus 52 GGip~g~itei~G~~~sGKT~l~l~~~~ 79 (268)
T d1xp8a1 52 GGIPRGRITEIYGPESGGKTTLALAIVA 79 (268)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 9866754789805876522799999999
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.88 E-value=0.14 Score=25.15 Aligned_cols=22 Identities=32% Similarity=0.551 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999879986289999999739
Q 004537 185 VLALMGPSGSGKTTLLNLLSGR 206 (746)
Q Consensus 185 ~~aIiGpsGsGKSTLl~~L~gr 206 (746)
.++++|++|+|||+|++-+.+.
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~~ 25 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLTK 25 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998997899999999739
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.82 E-value=0.12 Score=25.49 Aligned_cols=22 Identities=27% Similarity=0.395 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999879986289999999739
Q 004537 185 VLALMGPSGSGKTTLLNLLSGR 206 (746)
Q Consensus 185 ~~aIiGpsGsGKSTLl~~L~gr 206 (746)
.++|+|.+|+|||||++-+.+.
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~~ 29 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQS 29 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999997996989999999739
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.75 E-value=0.14 Score=25.13 Aligned_cols=22 Identities=23% Similarity=0.453 Sum_probs=18.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999879986289999999739
Q 004537 185 VLALMGPSGSGKTTLLNLLSGR 206 (746)
Q Consensus 185 ~~aIiGpsGsGKSTLl~~L~gr 206 (746)
.++++|.+|+|||||++-+.+.
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~~ 26 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999991989999999729
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=88.56 E-value=0.084 Score=26.63 Aligned_cols=21 Identities=33% Similarity=0.468 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999987998628999999973
Q 004537 185 VLALMGPSGSGKTTLLNLLSG 205 (746)
Q Consensus 185 ~~aIiGpsGsGKSTLl~~L~g 205 (746)
.+.++|++|+|||||++-+.+
T Consensus 14 kIvlvG~~~vGKTSli~rl~~ 34 (173)
T d1e0sa_ 14 RILMLGLDAAGKTTILYKLKL 34 (173)
T ss_dssp EEEEEEETTSSHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999878999999844
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.54 E-value=0.082 Score=26.71 Aligned_cols=21 Identities=48% Similarity=0.610 Sum_probs=18.1
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999879986289999999739
Q 004537 186 LALMGPSGSGKTTLLNLLSGR 206 (746)
Q Consensus 186 ~aIiGpsGsGKSTLl~~L~gr 206 (746)
++++|.+|+|||||++.+.+.
T Consensus 9 i~vvG~~~vGKTsLi~~l~~~ 29 (173)
T d2fu5c1 9 LLLIGDSGVGKTCVLFRFSED 29 (173)
T ss_dssp EEEECCCCC------------
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999994999999999709
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.51 E-value=0.15 Score=24.96 Aligned_cols=21 Identities=43% Similarity=0.577 Sum_probs=18.0
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999987998628999999973
Q 004537 185 VLALMGPSGSGKTTLLNLLSG 205 (746)
Q Consensus 185 ~~aIiGpsGsGKSTLl~~L~g 205 (746)
.++++|++|+|||||++-+.+
T Consensus 8 Ki~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 8 KVMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999299999999971
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=88.49 E-value=0.15 Score=25.03 Aligned_cols=35 Identities=23% Similarity=0.286 Sum_probs=22.0
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEEEC
Q ss_conf 099998799862899999997399999974189998
Q 004537 184 EVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYN 219 (746)
Q Consensus 184 e~~aIiGpsGsGKSTLl~~L~gr~~~~~~~G~I~~~ 219 (746)
+-+.|+|++|||||++++.+.-...... .+-|.+|
T Consensus 51 ~H~~I~G~tGsGKT~~l~~li~~~~~~g-~~~iiiD 85 (433)
T d1e9ra_ 51 RHLLVNGATGTGKSVLLRELAYTGLLRG-DRMVIVD 85 (433)
T ss_dssp GCEEEEECTTSSHHHHHHHHHHHHHHTT-CEEEEEE
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHCC-CCEEEEE
T ss_conf 6589990799968999999999998479-9889996
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.45 E-value=0.17 Score=24.56 Aligned_cols=20 Identities=35% Similarity=0.617 Sum_probs=17.7
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99998799862899999997
Q 004537 185 VLALMGPSGSGKTTLLNLLS 204 (746)
Q Consensus 185 ~~aIiGpsGsGKSTLl~~L~ 204 (746)
.+.++|.+|+|||||++-+.
T Consensus 4 KivllG~~~vGKTsll~r~~ 23 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQMR 23 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99999899999899999884
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.43 E-value=0.16 Score=24.83 Aligned_cols=22 Identities=27% Similarity=0.437 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999879986289999999739
Q 004537 185 VLALMGPSGSGKTTLLNLLSGR 206 (746)
Q Consensus 185 ~~aIiGpsGsGKSTLl~~L~gr 206 (746)
.++++|.+|+|||||++-+.+.
T Consensus 6 Ki~lvG~~~vGKTsll~~~~~~ 27 (169)
T d1x1ra1 6 KLVVVGDGGVGKSALTIQFFQK 27 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998995989999999709
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.39 E-value=0.17 Score=24.65 Aligned_cols=22 Identities=32% Similarity=0.445 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999879986289999999739
Q 004537 185 VLALMGPSGSGKTTLLNLLSGR 206 (746)
Q Consensus 185 ~~aIiGpsGsGKSTLl~~L~gr 206 (746)
.++++|.+|+|||||++-+.+.
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~~ 29 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999994989999999859
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=88.38 E-value=0.18 Score=24.47 Aligned_cols=21 Identities=19% Similarity=0.224 Sum_probs=18.5
Q ss_pred EEEEEECCCCCCHHHHHHHHH
Q ss_conf 099998799862899999997
Q 004537 184 EVLALMGPSGSGKTTLLNLLS 204 (746)
Q Consensus 184 e~~aIiGpsGsGKSTLl~~L~ 204 (746)
+-+||+|..|||||||...|.
T Consensus 7 Rni~i~gh~~~GKTtL~e~ll 27 (276)
T d2bv3a2 7 RNIGIAAHIDAGKTTTTERIL 27 (276)
T ss_dssp EEEEEEECTTSCHHHHHHHHH
T ss_pred EEEEEEECCCCCHHHHHHHHH
T ss_conf 299999589899899999999
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=88.17 E-value=0.16 Score=24.72 Aligned_cols=21 Identities=24% Similarity=0.371 Sum_probs=18.3
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999987998628999999973
Q 004537 185 VLALMGPSGSGKTTLLNLLSG 205 (746)
Q Consensus 185 ~~aIiGpsGsGKSTLl~~L~g 205 (746)
.++++|.+|+|||||++-+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899588999999972
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.07 E-value=0.16 Score=24.75 Aligned_cols=22 Identities=27% Similarity=0.347 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999879986289999999739
Q 004537 185 VLALMGPSGSGKTTLLNLLSGR 206 (746)
Q Consensus 185 ~~aIiGpsGsGKSTLl~~L~gr 206 (746)
.++|+|.+|+|||||++-+...
T Consensus 11 Ki~lvG~~~vGKTsLi~r~~~~ 32 (185)
T d2atxa1 11 KCVVVGDGAVGKTCLLMSYAND 32 (185)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999998999999999649
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.95 E-value=0.17 Score=24.54 Aligned_cols=22 Identities=27% Similarity=0.481 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999879986289999999739
Q 004537 185 VLALMGPSGSGKTTLLNLLSGR 206 (746)
Q Consensus 185 ~~aIiGpsGsGKSTLl~~L~gr 206 (746)
.++++|.+|+|||||++-+.+.
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~~ 28 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLTG 28 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998997899999999719
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=87.92 E-value=0.086 Score=26.57 Aligned_cols=24 Identities=29% Similarity=0.482 Sum_probs=20.9
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 099998799862899999997399
Q 004537 184 EVLALMGPSGSGKTTLLNLLSGRL 207 (746)
Q Consensus 184 e~~aIiGpsGsGKSTLl~~L~gr~ 207 (746)
.-+.|.||+|+|||||.+.+++.+
T Consensus 29 h~vLl~G~pG~GKT~lar~~~~iL 52 (333)
T d1g8pa_ 29 GGVLVFGDRGTGKSTAVRALAALL 52 (333)
T ss_dssp CCEEEECCGGGCTTHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 708998899852999999998737
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.57 E-value=0.094 Score=26.30 Aligned_cols=21 Identities=38% Similarity=0.548 Sum_probs=17.7
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999987998628999999973
Q 004537 185 VLALMGPSGSGKTTLLNLLSG 205 (746)
Q Consensus 185 ~~aIiGpsGsGKSTLl~~L~g 205 (746)
.++++|++|+|||||++-+.+
T Consensus 5 Ki~vvG~~~vGKTsli~~~~~ 25 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHLT 25 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC-
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999088999999984
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.44 E-value=0.18 Score=24.36 Aligned_cols=23 Identities=26% Similarity=0.286 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998799862899999997399
Q 004537 185 VLALMGPSGSGKTTLLNLLSGRL 207 (746)
Q Consensus 185 ~~aIiGpsGsGKSTLl~~L~gr~ 207 (746)
.++++|.+|+|||+|++-+.+..
T Consensus 5 KvvllG~~~vGKTSli~r~~~~~ 27 (191)
T d2ngra_ 5 KCVVVGDGAVGKTCLLISYTTNK 27 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999999969999999997199
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=87.43 E-value=0.23 Score=23.69 Aligned_cols=27 Identities=37% Similarity=0.647 Sum_probs=21.8
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 488099998799862899999997399
Q 004537 181 NPGEVLALMGPSGSGKTTLLNLLSGRL 207 (746)
Q Consensus 181 ~~Ge~~aIiGpsGsGKSTLl~~L~gr~ 207 (746)
+|.....++||+|+|||.+.+.|+..+
T Consensus 51 kp~~~~lf~Gp~G~GKt~lak~la~~l 77 (315)
T d1qvra3 51 RPIGSFLFLGPTGVGKTELAKTLAATL 77 (315)
T ss_dssp SCSEEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 876699997888624899999999983
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=86.92 E-value=0.22 Score=23.87 Aligned_cols=21 Identities=33% Similarity=0.518 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999987998628999999973
Q 004537 185 VLALMGPSGSGKTTLLNLLSG 205 (746)
Q Consensus 185 ~~aIiGpsGsGKSTLl~~L~g 205 (746)
.++|+|-+.+|||||++.|++
T Consensus 4 ~~GivG~Pn~GKSTlf~~lt~ 24 (278)
T d1jala1 4 KCGIVGLPNVGKSTLFNALTK 24 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 488889999988999999977
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=86.87 E-value=0.23 Score=23.69 Aligned_cols=48 Identities=13% Similarity=0.176 Sum_probs=37.9
Q ss_pred HHCCCEEEEECCCCC-CCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHH
Q ss_conf 639978999499999-999999999999999997897799995688908
Q 004537 311 IINPSLLFLDEPTSG-LDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSR 358 (746)
Q Consensus 311 ~~~P~iLlLDEPTsg-LD~~s~~~i~~~L~~l~~~g~Tii~~~Hq~s~~ 358 (746)
+.+.+++++|+--.= -+...+..+...+..+...|+.+|+++..+..+
T Consensus 95 ~~~~dll~iDDi~~i~~~~~~~~~lf~lin~~~~~~~~iiits~~~p~~ 143 (213)
T d1l8qa2 95 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQK 143 (213)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGG
T ss_pred HHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCHH
T ss_conf 7621301011265505865778899999998763166389954875100
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=86.69 E-value=0.24 Score=23.51 Aligned_cols=25 Identities=36% Similarity=0.694 Sum_probs=20.3
Q ss_pred EECCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 94880999987998628999999973
Q 004537 180 VNPGEVLALMGPSGSGKTTLLNLLSG 205 (746)
Q Consensus 180 i~~Ge~~aIiGpsGsGKSTLl~~L~g 205 (746)
.+++. +..+||+|+|||-|.+.|+.
T Consensus 66 ~p~~n-iLfiGPTGvGKTElAk~LA~ 90 (364)
T d1um8a_ 66 LSKSN-ILLIGPTGSGKTLMAQTLAK 90 (364)
T ss_dssp CCCCC-EEEECCTTSSHHHHHHHHHH
T ss_pred CCCCC-EEEECCCCCCHHHHHHHHHH
T ss_conf 78753-24418998637899999986
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=86.64 E-value=0.19 Score=24.31 Aligned_cols=22 Identities=45% Similarity=0.531 Sum_probs=19.3
Q ss_pred EEEEEECCCCCCHHHHHHHHHC
Q ss_conf 0999987998628999999973
Q 004537 184 EVLALMGPSGSGKTTLLNLLSG 205 (746)
Q Consensus 184 e~~aIiGpsGsGKSTLl~~L~g 205 (746)
-++.|-|.-|||||||++-+..
T Consensus 4 Pv~iitGFLGaGKTTll~~lL~ 25 (222)
T d1nija1 4 AVTLLTGFLGAGKTTLLRHILN 25 (222)
T ss_dssp EEEEEEESSSSSCHHHHHHHHH
T ss_pred CEEEEEECCCCCHHHHHHHHHH
T ss_conf 8899864888999999999985
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=86.50 E-value=0.22 Score=23.85 Aligned_cols=21 Identities=33% Similarity=0.599 Sum_probs=17.7
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999987998628999999973
Q 004537 185 VLALMGPSGSGKTTLLNLLSG 205 (746)
Q Consensus 185 ~~aIiGpsGsGKSTLl~~L~g 205 (746)
.+.++|.+|+|||+|++-+..
T Consensus 4 KivliG~~~vGKTsli~r~~~ 24 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAK 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999598999999972
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.32 E-value=0.24 Score=23.59 Aligned_cols=22 Identities=27% Similarity=0.453 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999879986289999999739
Q 004537 185 VLALMGPSGSGKTTLLNLLSGR 206 (746)
Q Consensus 185 ~~aIiGpsGsGKSTLl~~L~gr 206 (746)
.++++|.+|+|||+|++-+...
T Consensus 5 KivvvG~~~vGKTsli~r~~~~ 26 (167)
T d1c1ya_ 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999998998999999999709
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=85.97 E-value=0.28 Score=23.11 Aligned_cols=24 Identities=38% Similarity=0.487 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999987998628999999973999
Q 004537 185 VLALMGPSGSGKTTLLNLLSGRLM 208 (746)
Q Consensus 185 ~~aIiGpsGsGKSTLl~~L~gr~~ 208 (746)
-..|+||+|.|||+++.-++.|+.
T Consensus 41 n~lLVG~~GvGKTalv~~la~ri~ 64 (268)
T d1r6bx2 41 NPLLVGESGVGKTAIAEGLAWRIV 64 (268)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCEEECCCCCCHHHHHHHHHHHHH
T ss_conf 967988898867799999999998
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=85.61 E-value=0.39 Score=22.15 Aligned_cols=27 Identities=30% Similarity=0.524 Sum_probs=22.5
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 488099998799862899999997399
Q 004537 181 NPGEVLALMGPSGSGKTTLLNLLSGRL 207 (746)
Q Consensus 181 ~~Ge~~aIiGpsGsGKSTLl~~L~gr~ 207 (746)
+|.=-+||+|.-.+|||||++.|.|..
T Consensus 6 ~p~ini~iiGhVd~GKSTL~~~L~~~~ 32 (205)
T d2qn6a3 6 QPEVNIGVVGHVDHGKTTLVQAITGIW 32 (205)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHSCC
T ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 997089999724886999999997041
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=85.20 E-value=0.43 Score=21.87 Aligned_cols=31 Identities=29% Similarity=0.452 Sum_probs=25.5
Q ss_pred CEEEEEECCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 1279994880999987998628999999973
Q 004537 175 GITGSVNPGEVLALMGPSGSGKTTLLNLLSG 205 (746)
Q Consensus 175 ~vs~~i~~Ge~~aIiGpsGsGKSTLl~~L~g 205 (746)
|.=..+-.|+..+|.|++|+|||||+.-++.
T Consensus 60 D~l~pigkGQr~~If~~~g~GKt~l~~~i~~ 90 (276)
T d2jdid3 60 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN 90 (276)
T ss_dssp HHHSCEETTCEEEEEECTTSSHHHHHHHHHH
T ss_pred EEECCCCCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 1025636788777667999898999999999
|
| >d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Escherichia coli [TaxId: 562]
Probab=85.17 E-value=0.42 Score=21.96 Aligned_cols=20 Identities=50% Similarity=0.780 Sum_probs=17.4
Q ss_pred ECCEEEEEECCCCCCHHHHH
Q ss_conf 48809999879986289999
Q 004537 181 NPGEVLALMGPSGSGKTTLL 200 (746)
Q Consensus 181 ~~Ge~~aIiGpsGsGKSTLl 200 (746)
+.|++.+..|.||.|||||-
T Consensus 12 ~~~~~alfFGLSGTGKTTLs 31 (313)
T d2olra1 12 EKGDVAVFFGLSGTGKTTLS 31 (313)
T ss_dssp TTSCEEEEECSTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCCCCCE
T ss_conf 88988999704779856023
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=84.73 E-value=0.37 Score=22.29 Aligned_cols=21 Identities=33% Similarity=0.370 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999987998628999999973
Q 004537 185 VLALMGPSGSGKTTLLNLLSG 205 (746)
Q Consensus 185 ~~aIiGpsGsGKSTLl~~L~g 205 (746)
-++++|..++|||||++.|..
T Consensus 5 ni~iiGhvd~GKSTL~~~Ll~ 25 (204)
T d2c78a3 5 NVGTIGHVDHGKTTLTAALTY 25 (204)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHH
T ss_conf 999994789849999999999
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=84.58 E-value=0.83 Score=19.97 Aligned_cols=166 Identities=11% Similarity=0.081 Sum_probs=76.5
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEEECCEECCHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHCCCCCC
Q ss_conf 88099998799862899999997399999974189998870792102738999038867999999999999874069987
Q 004537 182 PGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNT 261 (746)
Q Consensus 182 ~Ge~~aIiGpsGsGKSTLl~~L~gr~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~d~l~~~lTV~E~l~f~a~~~~~~~ 261 (746)
+..+++|.|..|.|||||.+.+...... .. ......+.+|.-.. .+ +..+
T Consensus 43 ~~~~v~I~GmgGiGKTtLA~~v~~~~~~-~~------------~~~f~~~~Wv~vs~-~~---~~~~------------- 92 (277)
T d2a5yb3 43 DSFFLFLHGRAGSGKSVIASQALSKSDQ-LI------------GINYDSIVWLKDSG-TA---PKST------------- 92 (277)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHCSS-TB------------TTTBSEEEEEECCC-CS---TTHH-------------
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHH-HH------------HHCCCEEEEEEECC-CC---CHHH-------------
T ss_conf 8408999779978889999999985565-54------------01276489999368-77---7778-------------
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHC-CCEEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 7699999999999988399742222235855667898898999999999639-978999499999999999999999999
Q 004537 262 LTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIIN-PSLLFLDEPTSGLDSTTALRIVQMLQD 340 (746)
Q Consensus 262 ~~~~~~~~~v~~~l~~lgL~~~~~t~ig~~~~~~LSGGqrqRvsIA~aL~~~-P~iLlLDEPTsgLD~~s~~~i~~~L~~ 340 (746)
........+..++-.+..+..- . .-.-..+.+..+....+.+ +-+++||+.- |.. . ++.
T Consensus 93 -----l~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~L~~kr~LlVLDDv~---~~~-~------~~~ 152 (277)
T d2a5yb3 93 -----FDLFTDILLMLKSEDDLLNFPS----V-EHVTSVVLKRMICNALIDRPNTLFVFDDVV---QEE-T------IRW 152 (277)
T ss_dssp -----HHHHHHHHHHHTTTSCCTTCCC----C-TTCCHHHHHHHHHHHHTTSTTEEEEEEEEC---CHH-H------HHH
T ss_pred -----HHHHHHHHHHHHCCHHHCCCCC----C-HHHHHHHHHHHHHHHHHCCCCEEEECCHHH---HHH-H------HHH
T ss_conf -----9999999998722022027863----2-123369999999999844688167525066---776-6------555
Q ss_pred HHHCCCEEEEEECCCCHHHHHCCCEEEEEECCEEEEEC--CHHHHHHHHHHCCCCCCCCCCHHHHH
Q ss_conf 99789779999568890888506779997097699952--97789999985399999999958999
Q 004537 341 IAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG--KASEAMAYFSSIGCSPQIAMNPAEFL 404 (746)
Q Consensus 341 l~~~g~Tii~~~Hq~s~~i~~~~D~i~lL~~G~iv~~G--~~~~~~~yF~~~G~~~p~~~npad~~ 404 (746)
+...|.-||+|+-.. .+...++ .+.++..-. +.+|+.+-|...+++.+......|..
T Consensus 153 ~~~~~srilvTTR~~--~v~~~~~-----~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~ 211 (277)
T d2a5yb3 153 AQELRLRCLVTTRDV--EISNAAS-----QTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVL 211 (277)
T ss_dssp HHHTTCEEEEEESBG--GGGGGCC-----SCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHH
T ss_pred HCCCCCEEEEEEEHH--HHHHHCC-----CCCCEEECCCCCHHHHHHHHHHHHCCCCCCHHHHHHH
T ss_conf 204575599996448--9998637-----8871687788997999999999847766742567999
|
| >d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Thermus thermophilus [TaxId: 274]
Probab=83.75 E-value=0.47 Score=21.60 Aligned_cols=19 Identities=53% Similarity=0.807 Sum_probs=16.7
Q ss_pred CCEEEEEECCCCCCHHHHH
Q ss_conf 8809999879986289999
Q 004537 182 PGEVLALMGPSGSGKTTLL 200 (746)
Q Consensus 182 ~Ge~~aIiGpsGsGKSTLl 200 (746)
.|++....|.||.|||||-
T Consensus 13 ~~~valffGLSGTGKTTLs 31 (318)
T d1j3ba1 13 EGDVAVFFGLSGTGKTTLS 31 (318)
T ss_dssp TCCEEEEEECTTSCHHHHT
T ss_pred CCCEEEEECCCCCCCCCCC
T ss_conf 9988999736879814221
|
| >d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Herpes simplex virus type 1, different strains [TaxId: 10298]
Probab=83.65 E-value=0.36 Score=22.41 Aligned_cols=23 Identities=39% Similarity=0.442 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998799862899999997399
Q 004537 185 VLALMGPSGSGKTTLLNLLSGRL 207 (746)
Q Consensus 185 ~~aIiGpsGsGKSTLl~~L~gr~ 207 (746)
.++|=|+-|+||||+++.|+..+
T Consensus 6 rI~IEG~iGsGKTTl~~~La~~l 28 (329)
T d1e2ka_ 6 RVYIDGPHGMGKTTTTQLLVALG 28 (329)
T ss_dssp EEEECSCTTSSHHHHHHHHTC--
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998986778999999999981
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=83.03 E-value=0.28 Score=23.07 Aligned_cols=26 Identities=35% Similarity=0.595 Sum_probs=18.2
Q ss_pred CCCCEECEEEEEECCEEEEEECCCCCCHHHHH
Q ss_conf 45400212799948809999879986289999
Q 004537 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLL 200 (746)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~aIiGpsGsGKSTLl 200 (746)
.+.++++. .| -+.|.|+.||||||.+
T Consensus 16 Q~~~v~~~-----~g-~~lV~g~aGSGKTt~l 41 (318)
T d1pjra1 16 QQEAVRTT-----EG-PLLIMAGAGSGKTRVL 41 (318)
T ss_dssp HHHHHHCC-----SS-CEEEEECTTSCHHHHH
T ss_pred HHHHHHCC-----CC-CEEEEECCCCCHHHHH
T ss_conf 99998299-----99-9899952986689999
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=82.70 E-value=0.46 Score=21.65 Aligned_cols=42 Identities=12% Similarity=0.184 Sum_probs=27.5
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCH
Q ss_conf 97899949999999999999999999999789779999568890
Q 004537 314 PSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSS 357 (746)
Q Consensus 314 P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~Tii~~~Hq~s~ 357 (746)
.+++++||.- .|+..++..+.+.+.+-. .+..+|++++++..
T Consensus 116 ~kviiIde~d-~l~~~~q~~Llk~lE~~~-~~~~~il~tn~~~~ 157 (239)
T d1njfa_ 116 FKVYLIDEVH-MLSRHSFNALLKTLEEPP-EHVKFLLATTDPQK 157 (239)
T ss_dssp SEEEEEETGG-GSCHHHHHHHHHHHHSCC-TTEEEEEEESCGGG
T ss_pred CEEEEEECCC-CCCHHHHHHHHHHHHCCC-CCEEEEEECCCCCC
T ss_conf 8799997811-089999999999985689-88699997388563
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=82.66 E-value=0.41 Score=22.01 Aligned_cols=21 Identities=33% Similarity=0.513 Sum_probs=18.2
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999987998628999999973
Q 004537 185 VLALMGPSGSGKTTLLNLLSG 205 (746)
Q Consensus 185 ~~aIiGpsGsGKSTLl~~L~g 205 (746)
.+.++|.+|+|||||++-+..
T Consensus 4 Kiv~lG~~~vGKTsll~r~~~ 24 (200)
T d2bcjq2 4 KLLLLGTGESGKSTFIKQMRI 24 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999988999999967
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=82.31 E-value=0.46 Score=21.67 Aligned_cols=21 Identities=33% Similarity=0.518 Sum_probs=18.1
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999987998628999999973
Q 004537 185 VLALMGPSGSGKTTLLNLLSG 205 (746)
Q Consensus 185 ~~aIiGpsGsGKSTLl~~L~g 205 (746)
.+.++|..|+|||||++-+..
T Consensus 4 KivllG~~~vGKTsl~~r~~~ 24 (195)
T d1svsa1 4 KLLLLGAGESGKSTIVKQMKI 24 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999888999998840
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=82.28 E-value=0.39 Score=22.20 Aligned_cols=16 Identities=31% Similarity=0.534 Sum_probs=13.4
Q ss_pred EEEEECCCCCCHHHHH
Q ss_conf 9999879986289999
Q 004537 185 VLALMGPSGSGKTTLL 200 (746)
Q Consensus 185 ~~aIiGpsGsGKSTLl 200 (746)
-+.|.|+.|+||||.+
T Consensus 16 ~~lI~g~aGTGKTt~l 31 (306)
T d1uaaa1 16 PCLVLAGAGSGKTRVI 31 (306)
T ss_dssp EEEECCCTTSCHHHHH
T ss_pred CEEEEEECCCCHHHHH
T ss_conf 9899962884389999
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=82.26 E-value=0.6 Score=20.89 Aligned_cols=26 Identities=27% Similarity=0.354 Sum_probs=22.4
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 88099998799862899999997399
Q 004537 182 PGEVLALMGPSGSGKTTLLNLLSGRL 207 (746)
Q Consensus 182 ~Ge~~aIiGpsGsGKSTLl~~L~gr~ 207 (746)
.+-.++|+|-+-+|||||+|.|.|+.
T Consensus 111 ~~~~v~vvG~PNvGKSsliN~L~~~~ 136 (273)
T d1puja_ 111 RAIRALIIGIPNVGKSTLINRLAKKN 136 (273)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCEEEEEEECCCCCHHHHHHHHHCCC
T ss_conf 75278998667544355542542661
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=82.00 E-value=0.52 Score=21.30 Aligned_cols=43 Identities=12% Similarity=0.251 Sum_probs=26.9
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCH
Q ss_conf 997899949999999999999999999999789779999568890
Q 004537 313 NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSS 357 (746)
Q Consensus 313 ~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~Tii~~~Hq~s~ 357 (746)
+.+++++||.- .+...++..+.+.+.+-. .+..+|+++++++.
T Consensus 108 ~~kviIide~d-~l~~~a~n~Llk~lEep~-~~~~fIl~t~~~~~ 150 (207)
T d1a5ta2 108 GAKVVWVTDAA-LLTDAAANALLKTLEEPP-AETWFFLATREPER 150 (207)
T ss_dssp SCEEEEESCGG-GBCHHHHHHHHHHHTSCC-TTEEEEEEESCGGG
T ss_pred CCCEEEECHHH-HHHHHHHHHHHHHHHHHC-CCCEEEEEECCHHH
T ss_conf 64047731344-200001499999998501-11104553068655
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=82.00 E-value=0.52 Score=21.30 Aligned_cols=108 Identities=24% Similarity=0.394 Sum_probs=56.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEEECCEECCHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHCCCCCCCCH
Q ss_conf 99998799862899999997399999974189998870792102738999038867999999999999874069987769
Q 004537 185 VLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTK 264 (746)
Q Consensus 185 ~~aIiGpsGsGKSTLl~~L~gr~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~d~l~~~lTV~E~l~f~a~~~~~~~~~~ 264 (746)
-..++|++|.|||+++.-|+.|+. .|++ ++.++..- ++ .+++..-+. ....+
T Consensus 45 n~lLvG~pGVGKTalv~~LA~ri~----~~~v-------p~~L~~~~--------i~-~ld~~~LiA--------g~~~r 96 (195)
T d1jbka_ 45 NPVLIGEPGVGKTAIVEGLAQRII----NGEV-------PEGLKGRR--------VL-ALDMGALVA--------GAKYR 96 (195)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH----HTCS-------CGGGTTCE--------EE-EECHHHHHT--------TTCSH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH----HCCC-------CHHHCCCE--------EE-EEEHHHHHC--------CCCCC
T ss_conf 739983587544799999999998----0899-------97881856--------99-966999864--------58740
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH-C-CCEEEEECCCCCCCHHHH---HHHHHHHH
Q ss_conf 999999999998839974222223585566789889899999999963-9-978999499999999999---99999999
Q 004537 265 QQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIII-N-PSLLFLDEPTSGLDSTTA---LRIVQMLQ 339 (746)
Q Consensus 265 ~~~~~~v~~~l~~lgL~~~~~t~ig~~~~~~LSGGqrqRvsIA~aL~~-~-P~iLlLDEPTsgLD~~s~---~~i~~~L~ 339 (746)
.+.++++..+++++ .. + .-||++||...=+++-+. ..+.+.|+
T Consensus 97 G~~E~rl~~il~e~--------------------------------~~~~~~iILfIDeih~l~~~g~~~g~~d~~~~Lk 144 (195)
T d1jbka_ 97 GEFEERLKGVLNDL--------------------------------AKQEGNVILFIDELHTMVGAGKADGAMDAGNMLK 144 (195)
T ss_dssp HHHHHHHHHHHHHH--------------------------------HHSTTTEEEEEETGGGGTT------CCCCHHHHH
T ss_pred HHHHHHHHHHHHHH--------------------------------HCCCCCEEEECCHHHHHHCCCCCCCCCCHHHHHH
T ss_conf 77999999999987--------------------------------3179808997260899843787777523899999
Q ss_pred HHHHCCC-EEEEEE
Q ss_conf 9997897-799995
Q 004537 340 DIAEAGK-TVVTTI 352 (746)
Q Consensus 340 ~l~~~g~-Tii~~~ 352 (746)
..-.+|. .+|.++
T Consensus 145 p~L~rg~l~~Igat 158 (195)
T d1jbka_ 145 PALARGELHCVGAT 158 (195)
T ss_dssp HHHHTTSCCEEEEE
T ss_pred HHHHCCCCEEEECC
T ss_conf 99857995498518
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=81.75 E-value=0.6 Score=20.89 Aligned_cols=21 Identities=29% Similarity=0.452 Sum_probs=17.5
Q ss_pred CCEEEEEECCCCCCHHHHHHH
Q ss_conf 880999987998628999999
Q 004537 182 PGEVLALMGPSGSGKTTLLNL 202 (746)
Q Consensus 182 ~Ge~~aIiGpsGsGKSTLl~~ 202 (746)
.+.++.|.||.|+||||++..
T Consensus 162 ~~~~~vI~G~pGTGKTt~i~~ 182 (359)
T d1w36d1 162 TRRISVISGGPGTGKTTTVAK 182 (359)
T ss_dssp TBSEEEEECCTTSTHHHHHHH
T ss_pred CCCEEEEECCCCCCCEEHHHH
T ss_conf 088599976898875216999
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=81.66 E-value=0.6 Score=20.92 Aligned_cols=23 Identities=26% Similarity=0.291 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998799862899999997399
Q 004537 185 VLALMGPSGSGKTTLLNLLSGRL 207 (746)
Q Consensus 185 ~~aIiGpsGsGKSTLl~~L~gr~ 207 (746)
.+.|=|+-|+||||+++.|+..+
T Consensus 8 rI~iEG~iGsGKSTl~~~L~~~l 30 (333)
T d1p6xa_ 8 RIYLDGVYGIGKSTTGRVMASAA 30 (333)
T ss_dssp EEEEECSTTSSHHHHHHHHHSGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998886678999999999986
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=81.23 E-value=0.58 Score=21.00 Aligned_cols=24 Identities=29% Similarity=0.407 Sum_probs=20.1
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 880999987998628999999973
Q 004537 182 PGEVLALMGPSGSGKTTLLNLLSG 205 (746)
Q Consensus 182 ~Ge~~aIiGpsGsGKSTLl~~L~g 205 (746)
|.=-+|++|.-.+|||||++.|.+
T Consensus 2 p~ini~iiGHvd~GKSTL~~~l~~ 25 (196)
T d1d2ea3 2 PHVNVGTIGHVDHGKTTLTAAITK 25 (196)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCHHHHHHHHHH
T ss_conf 971899995889809999999999
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| >d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=80.81 E-value=0.48 Score=21.58 Aligned_cols=20 Identities=50% Similarity=0.783 Sum_probs=17.4
Q ss_pred ECCEEEEEECCCCCCHHHHH
Q ss_conf 48809999879986289999
Q 004537 181 NPGEVLALMGPSGSGKTTLL 200 (746)
Q Consensus 181 ~~Ge~~aIiGpsGsGKSTLl 200 (746)
+.|+.....|.||.|||||-
T Consensus 12 ~~gd~alfFGLSGTGKTTLs 31 (323)
T d1ii2a1 12 KQGDVTVFFGLSGTGKTTLS 31 (323)
T ss_dssp TTCCEEEEECCTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCCCCCE
T ss_conf 88987999736778812051
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| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=80.42 E-value=0.46 Score=21.65 Aligned_cols=59 Identities=14% Similarity=0.161 Sum_probs=33.7
Q ss_pred HCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHCCCEEEEEECCEEEEECCHHHHHHHHHH
Q ss_conf 399789994999999999999999999999978977999956889088850677999709769995297789999985
Q 004537 312 INPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSS 389 (746)
Q Consensus 312 ~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~Tii~~~Hq~s~~i~~~~D~i~lL~~G~iv~~G~~~~~~~yF~~ 389 (746)
.+-.+++. .+..|.-+.++..+..+. +.+..+++++...-.. ...+ .-+++++...|..
T Consensus 120 ~D~allVV-da~eGv~~qT~~~~~~a~----~~~~p~i~viNKiDr~-~~el-------------~~~~~~~~~~l~~ 178 (341)
T d1n0ua2 120 TDGALVVV-DTIEGVCVQTETVLRQAL----GERIKPVVVINKVDRA-LLEL-------------QVSKEDLYQTFAR 178 (341)
T ss_dssp CSEEEEEE-ETTTBSCHHHHHHHHHHH----HTTCEEEEEEECHHHH-HHTS-------------CCCHHHHHHHHHH
T ss_pred CCCEEEEE-ECCCCCCHHHHHHHHHHH----HCCCCEEEEEECCCCC-CCCH-------------HHHHHHHHHHHCC
T ss_conf 37249998-656682046999999998----7699869998772655-5427-------------7669999999757
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