Citrus Sinensis ID: 004540

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740------
Protein Sequence
MFVVLASTYFYMVSLSMAIGVALDPSKCSKLSMEEKRELVYQLSKQSHSASETLRSWTRQEILQILCAELGKERKYTGLTKLKIIENLLKLVSEKKSGEREAKTDIEPQSSPASSQRPSKRQRKNDNPARLPVPVTDAAMNNSGSDLVNAIYCKNSACRATLRKEDVFCKRCSCCICRKYDDNKDPSLWLTCSSEPPFGGDSCGMSCHLECALKNERSGIGKDRCYSGLDGSFYCISCRKVNDLLGCWKKQLVVAKNTRRVDILCYRLSLGQKLVNATEKYKNLSKIVDDAVKMLEDEVGPLTGLPVKMGRGIVNRLSSGPEVQKLCACAVESLDKMISNTILPNPSVQGSNVIVPNMVKFEDVRATSLTVVLGSEDPSPGNIISYTLWHRRAHEGFPARPTCTLFAPNTRFVVTGLCPATEYQFKVVSSNGTTELGRCEIWFSTGSSRDEVTNCSVIERSQSPATNCSSLSNPSSVEDETNNVTPDRDPNDAQVNNYYTYSKETDKIASTNLCDDAIDCTVLGRGTTPADAVSLLDEERANNIDGSMPDSHVQKLESKHPPEGRIIEEMSTDNGVDTPVPTGMECVPYMRSLEAGLPITPCKIEILKDAQARNGRSKLNSKDMENGTGNRDEPQDGSTSKKRSSESRDEDCTANGLSDMDFEHCVKVIRWLECEGHIERNFRQKFLTWYSLRATPQEVRIVKVFVDTFVEDPASLAEQLMDTFSDCISSRRSSVVPAGFCMKLWH
Secondary Structure (PSIPRED)
cEEEEEEEEEEEEcccccccccccccccccccHHHHHHHHHHHHHccccHHHHHccccHHHHHHHHHHHHccccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccEEEEccccccccccccEEEccccccccccccccHHHHHHHHcccccccccccccccccEEEEEccccccccHHHHHHHHHHHHHHccHHHHHHHHHcccHHHHcccHHHHHHHHHHHHHHHHHHccccccccccccccccHHEEcccHHHHHHHHHHHHHHHccccccccccccccccccccccccEEEEEEEcEEEEEEccccccccccccEEEEEEEcccccccccccEEEcccccEEEEcccccccEEEEEEEEEccccccccEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEEEcccccccccccEEEEEEcccccccEEEHHHHHHHHcccHHHHHHHHHHHHHHHHHccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cEEEEEEEEEEcccccccccEEEcccHcccccHHHHHHHHHHHHHccccHHHHHHcccHHHHHHHHHHHHccccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccHHHHcccccccHHHccEEEEEEcccccccccEEEEEccccccccccccccHHHHHHHHccccccccccccccccEEEEEEccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccEEEEEEEcccEEEEEEEcccccHccccEEEEEEEcccccccccccEEEEccccEEEEEccccccEEEEEEEEEccccccccEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHcccccccccccHHcccccccccccccccccccHHcccccccccccccHccccccccccccEEEEccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHccccccccccHHHHHcc
Coil and Loop (DISEMBL)
MFVVLASTYFYMVSLSMAIGvaldpskcsklsMEEKRELVYQLSKQSHSASETLRSWTRQEILQILCAELGkerkytglTKLKIIENLLKLVSEKksgereaktdiepqsspassqrpskrqrkndnparlpvpvtdaamnnsgsdLVNAIYCKNSACRATLRKEdvfckrcsccicrkyddnkdpslwltcsseppfggdscgmschLECALknersgigkdrcysgldgsfyciscRKVNDLLGCWKKQLVVAKNTRRVDILCYRLSLGQKLVNATEKYKNLSKIVDDAVKMLEdevgpltglpvkmgrgivnrlssgpEVQKLCACAVESLDKMIsntilpnpsvqgsnvivpnmvkfeDVRATSLTVVlgsedpspgniiSYTLWHrrahegfparptctlfapntrfvvtglcpateyQFKVvssngttelgrceiwfstgssrdevtncsviersqspatncsslsnpssvedetnnvtpdrdpndaqvnnyytysketdkiastnlcddaidctvlgrgttpadaVSLLDeerannidgsmpdshvqkleskhppegriieemstdngvdtpvptgmecvpymrsleaglpitpckIEILKDAQarngrsklnskdmengtgnrdepqdgstskkrssesrdedctanglsdmdfEHCVKVIRWLECEGHIERNFRQKFLtwyslratpqeVRIVKVFVDTFVEDPASLAEQLMDTFSDcissrrssvvpagfcmklwh
Flexible Loop (DISEMBL)
MFVVLASTYFYMVSLSMAIGVALDPSKCSKLSMEEKRELVYQLSKqshsasetlrswtrQEILQILCAElgkerkytgltkLKIIENLLKLVsekksgereaktdiepqsspassqrpskrqrkndnparlpvpvtdaamnnsGSDLVNAIYCKNSACRATLRKEDVFCKRCSCCICrkyddnkdpsLWLTCSSEPPFGGDSCGMSCHLECALKNERSGIGKDRCYSGLDGSFYCISCRKVNDLLGCWKKQLvvakntrrvDILCyrlslgqklvnatekyknLSKIVDDAVKMLEDEVGpltglpvkmGRGIVNRLSSGPEVQKLCACAVESLDKMISNTilpnpsvqgsnVIVPNMVKFEDVRATSLTvvlgsedpspgNIISYTLWHRRAHEGFPARPTCTLFAPNTRFVVTGLCPATEYQFKvvssngttelGRCEIWfstgssrdevTNCSVIersqspatncsslsnpssvedetnnvtpdrdpndaqVNNYYTYSKETDKIASTNLCDDAIDCTVLGRGTTPADAVSLLDEERANnidgsmpdshvqkLESKHPPEGRIIEemstdngvdtpvPTGMECVPYMRSLEAGLPITPCKIEILKDAqarngrsklnskdmengtgnrdepqdgstskkrssesrdedctanglsdmdfEHCVKVIRWLECEGHIERNFRQKFLTWYSLRATPQEVRIVKVFVDTFVEDPASLAEQLMDTFSDCissrrssvvpagfcmklwh
Low Complexity Region (SEG)
MFVVLASTYFYMVSLSMAIGVALDPSKCSKLSMEEKRELVYQLSKQSHSASETLRSWTRQEILQILCAELGKERKYTGLTKLKIIENLLKLVSEKKSGEREAKTDIEpqsspassqrpskrqrkNDNPARLPVPVTDAAMNNSGSDLVNAIYCKNSACRATLRKEDVFCKRCSCCICRKYDDNKDPSLWLTCSSEPPFGGDSCGMSCHLECALKNERSGIGKDRCYSGLDGSFYCISCRKVNDLLGCWKKQLVVAKNTRRVDILCYRLSLGQKLVNATEKYKNLSKIVDDAVKMLEDEVGPLTGLPVKMGRGIVNRLSSGPEVQKLCACAVESLDKMISNTILPNPSVQGSNVIVPNMVKFEDVRATSLTVVLGSEDPSPGNIISYTLWHRRAHEGFPARPTCTLFAPNTRFVVTGLCPATEYQFKVVSSNGTTELGRCEIWFSTGSSRDEVTNCSVIERSQSPATNCSSLSNPSSVEDETNNVTPDRDPNDAQVNNYYTYSKETDKIASTNLCDDAIDCTVLGRGTTPADAVSLLDEERANNIDGSMPDSHVQKLESKHPPEGRIIEEMSTDNGVDTPVPTGMECVPYMRSLEAGLPITPCKIEILKDAQARNGRSKLNSKDMENGTGNRDEPQDGSTSKKRSSESRDEDCTANGLSDMDFEHCVKVIRWLECEGHIERNFRQKFLTWYSLRATPQEVRIVKVFVDTFVEDPASLAEQLMDTFSDCISSRRSSVVPAGFCMKLWH
Disordered region (IsUnstruct)
*FVVLASTYFYMVSLSMAIGVALDP****************************LRSWTRQEILQILCAELGKERKYTGLTKLKIIENLLKLV*****************************************************DLVNAIYCKNSACRATLRKEDVFCKRCSCCICRKYDDNKDPSLWLTCSSEPPFGGDSCGMSCHLECALKNERSGIGKDRCYSGLDGSFYCISCRKVNDLLGCWKKQLVVAKNTRRVDILCYRLSLGQKLVNATEKYKNLSKIVDDAVKMLEDEVGPLTGLPVKMGRGIVNRLSSGPEVQKLCACAVESLDKMISNTILPNPSVQGSNVIVPNMVKFEDVRATSLTVVLGSEDPSPGNIISYTLWHRRAHEGFPARPTCTLFAPNTRFVVTGLCPATEYQFKVVSSNGTTELGRCEIWFSTG*************************************************NNYYTYSKETDKIASTNLCDDAIDCTVLGRGTTP****************************************************TGMECVPYMRSLEAGLPITPCKIEILK************************************************LSDMDFEHCVKVIRWLECEGHIERNFRQKFLTWYSLRATPQEVRIVKVFVDTFVEDPASLAEQLMDTFSDCISSRRSSVVPAGFCMKLW*
Disordered Region (DISOPRED)
MFVVLASTYFYMVSLSMAIGVAL*********************K******ETLRSWTRQEILQILCAELGKERKYTGLTKLKIIENLLK********************************************************LVNAIYCKNSACRATLRKEDVFCKRCSCCICRKYDDNKDPSLWLTCSSEPPFGGDSCGMSCHLECALKN*************LDGSFYCISCRKVNDLLGCWKKQLVVAKNTRRVDILCYRLSLGQKLVNATEKYKNLSKIVDDAVKMLEDEVGPLTGLPVKMGRGIVNRLSSGPEVQKLCACAVESL**********************NMVKFEDVRATSLTVVLGSEDPSPGNIISYTLWHRRAHEGFPARPTCTLFAPNTRFVVTGLCPATEYQFKVVSSNGTTELGRC*****************************************************************************************************************************************************************************************************************************DFEHCVKVIRWLECEGHIERNFRQKFLTWYSLRATPQEVRIVKVFVDTFVEDPASLAEQLMDTFSDCISSRRSSVVPAGFCMKLWH
Disordered Region (DISEMBL)
MFVVLASTYFYMVSLSMAIGVALDPSKCSKLSME********************RSWTRQEILQILCAELGKERKYTGLTKLKIIENLLKLVSEK********************************PARLPVPVTDAAMNNSGSDLVNAIYCKNSACRATLRKEDVFCKRCSCCICRKYDDNKDPSLWLTCSSEPPFGGDSCGMSCHLECALKNERSGIGKDRCYSGLDGSFYCISCRKVNDLLGCWKKQLVVAKNTRRVDILCYRLSLGQKLVNATEKYKNLSKIVDDAVKMLEDEVGPLTGLPVKMGRGIVNRLSSGPEVQKLCACAVESLDKMISNTILPNPSVQGSNVIVPNMVKFEDVRATSLTVVLGSEDPSPGNIISYTLWHRRAHEGFPARPTCTLFAPNTRFVVTGLCPATEYQFKVVSSNGTTELGRCEIWFSTGSSRDEVTNCSVIERSQ***********************PDRDPNDAQVNNYYTYSKETDKIASTNLCDDAIDCTVLGRGTTPADAVSLLDEERANNIDGSMPDSHVQKLESKHPPEGRIIEEMSTDNGVDTPVPTGMECVPYMRSLEAGLPITPCKIEILKDAQARNGRSKLNSKDME****************************ANGLSDMDFEHCVKVIRWLECEGHIERNFRQKFLTWYSLRATPQEVRIVKVFVDTFVEDPASLAEQLMDTFSDCISSRRSSVVPAGFCMKLWH
Disordered Region (DISPRO)
MFVVLASTYFYMVSLSMAIGVALDPSKCSKLSMEEKRELVYQLSKQSHSASETLRSWTRQEILQILCAELGKERKYTGLTKLKIIENLLKLVSE*************************************************GSDLVNAIYCKNSACRATLRKEDVFCKRCSCCICRKYDDNKDPSLWLTCSSEPPFGGDSCGMSCHLECALKNERSGIGKDRCYSGLDGSFYCISCRKVNDLLGCWKKQLVVAKNTRRVDILCYRLSLGQKLVNATEKYKNLSKIVDDAVKMLEDEVGPLTGLPVKMGRGIVNRLSSGPEVQKLCACAVESLDKMISNT**********NVIVPNMVKFEDVRATSLTVVLGSEDPSPGNIISYTLWHRRAHEGFPARPTCTLFAPNTRFVVTGLCPATEYQFKVVSSNGTTELGRCEIWFSTGS*******************************************************************************************************SHVQKLESKHPPEGRIIEEMS**************************************************************************************SDMDFEHCVKVIRWLECEGHIERNFRQKFLTWYSLRATPQEVRIVKVFVDTFVEDPASLAEQLMDTFSDCISSRRSSVVPAGFC*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFVVLASTYFYMVSLSMAIGVALDPSKCSKLSMEEKRELVYQLSKQSHSASETLRSWTRQEILQILCAELGKERKYTGLTKLKIIENLLKLVSEKKSGEREAKTDIEPQSSPASSQRPSKRQRKNDNPARLPVPVTDAAMNNSGSDLVNAIYCKNSACRATLRKEDVFCKRCSCCICRKYDDNKDPSLWLTCSSEPPFGGDSCGMSCHLECALKNERSGIGKDRCYSGLDGSFYCISCRKVNDLLGCWKKQLVVAKNTRRVDILCYRLSLGQKLVNATEKYKNLSKIVDDAVKMLEDEVGPLTGLPVKMGRGIVNRLSSGPEVQKLCACAVESLDKMISNTILPNPSVQGSNVIVPNMVKFEDVRATSLTVVLGSEDPSPGNIISYTLWHRRAHEGFPARPTCTLFAPNTRFVVTGLCPATEYQFKVVSSNGTTELGRCEIWFSTGSSRDEVTNCSVIERSQSPATNCSSLSNPSSVEDETNNVTPDRDPNDAQVNNYYTYSKETDKIASTNLCDDAIDCTVLGRGTTPADAVSLLDEERANNIDGSMPDSHVQKLESKHPPEGRIIEEMSTDNGVDTPVPTGMECVPYMRSLEAGLPITPCKIEILKDAQARNGRSKLNSKDMENGTGNRDEPQDGSTSKKRSSESRDEDCTANGLSDMDFEHCVKVIRWLECEGHIERNFRQKFLTWYSLRATPQEVRIVKVFVDTFVEDPASLAEQLMDTFSDCISSRRSSVVPAGFCMKLWH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	746	2.2.26 [Sep-21-2011]
Q9FIE3	620	Protein VERNALIZATION INS	no	no	0.533	0.641	0.475	1e-102
Q84TI3	1162	Protein OBERON 4 OS=Arabi	no	no	0.202	0.129	0.232	3e-07
Q84N38	549	OBERON-like protein OS=Ni	N/A	no	0.123	0.167	0.292	0.0003
Q94B71	733	Protein OBERON 3 OS=Arabi	no	no	0.190	0.193	0.236	0.0004

>sp|Q9FIE3|VIN3_ARATH Protein VERNALIZATION INSENSITIVE 3 OS=Arabidopsis thaliana GN=VIN3 PE=2 SV=2

 Score =  374 bits (960), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 219/461 (47%), Positives = 285/461 (61%), Gaps = 63/461 (13%)

Query: 31  LSMEEKRELVYQLSKQSHSASETLRSWTRQEILQILCAELGKERKYTGLTKLKIIENLLK 90
           L++ E+REL++ LS Q   ASE L SW+R EI++I+CAE+GKERKYTGL K K+IENLL 
Sbjct: 40  LNVSERRELIHALSNQPEEASELLNSWSRNEIMKIICAEMGKERKYTGLNKPKLIENLLN 99

Query: 91  LVSEKKSGEREAKTDIEPQSSPASSQRPSKRQRKNDNPARLPVPVTDAAMNNSGSDLVNA 150
           LVS              P    + S R + R+++      +                   
Sbjct: 100 LVS-------------RPLGETSCSDRRNSRKKEKKMIGYI------------------- 127

Query: 151 IYCKNSACRATLRKEDVFCKRCSCCICRKYDDNKDPSLWLTCSSEPPFGGDSCGMSCHLE 210
           I C+N ACRA L  +D FC+RCSCCIC+K+DDNKDPSLWLTC        D+CG SCHLE
Sbjct: 128 ICCENLACRAALGCDDTFCRRCSCCICQKFDDNKDPSLWLTC--------DACGSSCHLE 179

Query: 211 CALKNERSGIGKDRCYSGLDGSFYCISCRKVNDLLGCWKKQLVVAKNTRRVDILCYRLSL 270
           C LK +R GIG D     LDG FYC  C K NDLLGCW+KQ+ VAK TRRVD+LCYRLSL
Sbjct: 180 CGLKQDRYGIGSD----DLDGRFYCAYCGKDNDLLGCWRKQVKVAKETRRVDVLCYRLSL 235

Query: 271 GQKLVNATEKYKNLSKIVDDAVKMLEDEVGPLTGLPVKMGRGIVNRLSSGPEVQKLCACA 330
           GQKL+  T KY+NL +++D+AVK LE +VGPL+G  +KM RGIVNRLSSG  VQKLC+ A
Sbjct: 236 GQKLLRGTTKYRNLLELMDEAVKKLEGDVGPLSGWAMKMARGIVNRLSSGVHVQKLCSQA 295

Query: 331 VESLDKMISNTILPNPSVQGSNVIVPNMVKFEDVRATSLTVVLGSEDPSP---GNIISYT 387
           +E+LDK++S    P+ SV G    +   V+ E+++A S+TV + SE+PS      I  + 
Sbjct: 296 MEALDKVVS----PSESVSGQGDKM--TVRVEEIQARSVTVRVDSEEPSSSTQNKITGFR 349

Query: 388 LWHRRAH-EGFPARPTCTLFAPNTRFVVTGLCPATEYQFKVVSSNGTTELGRCEIWFST- 445
           L+ R++  E   ++  C ++ P T   + GL P TE+  +VVS N   +L   E+ F+T 
Sbjct: 350 LFCRKSKDEECSSQGNCVVYLPETTSAIQGLEPDTEFCLRVVSFNEEGDLDESELRFTTL 409

Query: 446 GSSRDEVTNCSVIERSQSPATNCSS--LSNPSSVEDETNNV 484
               DE  +       QSP TN SS   SNPS  EDE+NNV
Sbjct: 410 KDDGDEAGD------QQSPLTNSSSGLCSNPSLPEDESNNV 444

Plays a central role in vernalization by mediating the initial transcriptional repression of the homeotic gene FLC, a floral repressor, after a cold treatment. However, due to its transient expression, it can not maintain repression of FLC, which is then maintained by Polycomb Group complexes containing VRN2 throughout development. Required to deacetylate histones on the FLC promoter.
Arabidopsis thaliana (taxid: 3702)

>sp|Q84TI3|OBE4_ARATH Protein OBERON 4 OS=Arabidopsis thaliana GN=OBE4 PE=1 SV=2

 Score = 57.8 bits (138), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/176 (23%), Positives = 73/176 (41%), Gaps = 25/176 (14%)

Query: 145 SDLVNAIYCKNSACRATL----------RKEDVFCKRCSCCICRKYDDNKDPSLWLTCSS 194
           +++   + CKN +CR  L           ++D FC  C C +C  +D   +   W+ C  
Sbjct: 799 AEIFMNMRCKNLSCRVLLPVDECDCRVCSRKDGFCSACMCLVCSNFDMASNTCSWVGC-- 856

Query: 195 EPPFGGDSCGMSCHLECALKNE--RSGIGKDRCYSGLDGSFYCISCRKVNDLLGCWKKQL 252
                 D C   CH +C +K    R+GI         +  F+C++C   +++ G  K+  
Sbjct: 857 ------DVCLHWCHTDCGIKESYIRNGINASGAPGMTEMQFHCVACNHPSEMFGFVKEVF 910

Query: 253 VVAKNTRRVDILCYRLSLGQKLVNATE--KYKNLSKIVDDAVKMLEDEVGPLTGLP 306
           +      + +  C  L    K+ ++++  + K L +  D    ML      L GLP
Sbjct: 911 LNFAREWKFERFCKELEYVNKIFSSSKDSRGKQLRQAAD---AMLASLKSKLIGLP 963

Arabidopsis thaliana (taxid: 3702)

>sp|Q84N38|PVIP_NICBE OBERON-like protein OS=Nicotiana benthamiana GN=PVIP PE=1 SV=1

 Score = 47.8 bits (112), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 49/113 (43%), Gaps = 21/113 (18%)

Query: 153 CKNSACRATL----------RKEDVFCKRCSCCICRKYDDNKDPSLWLTCSSEPPFGGDS 202
           C+N AC + L           K++ FC  C C IC K+D   +   W+ C        D 
Sbjct: 196 CRNIACGSMLPAEECSCEICAKKNGFCNLCMCVICYKFDFEVNSCRWIGC--------DL 247

Query: 203 CGMSCHLECALKNERSGIGKD--RCYSGLDGSFYCISCRKVNDLLGCWKKQLV 253
           C    H +CA+ N + G G       S  +  F C +C + ++LLG W K + 
Sbjct: 248 CSHWTHTDCAISNGQIGTGPSVKNGASSAETLFRCHACSRTSELLG-WVKDVF 299

Required for the maintenance and/or establishment of both the shoot and root meristems, probably by controlling the expression of the meristem genes and of genes required for auxin responses. Involved in the development of the basal pole and in auxin-mediated root and vascular development in the embryo (By similarity). Confers sensitivity to turnip mosaic virus (TuMV) probably by promoting viral movement and multiplication via interaction with TuMV VPg.

Nicotiana benthamiana (taxid: 4100)

>sp|Q94B71|OBE3_ARATH Protein OBERON 3 OS=Arabidopsis thaliana GN=OBE3 PE=1 SV=1

 Score = 47.4 bits (111), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 40/169 (23%), Positives = 69/169 (40%), Gaps = 27/169 (15%)

Query: 151 IYCKNSACRATLRKEDV----------FCKRCSCCICRKYDDNKDPSLWLTCSSEPPFGG 200
           + C+N  C++ L  +D           FC  C C +C ++D   +   W+ C        
Sbjct: 406 LRCRNVNCKSLLPVDDCECKICSNNKGFCSSCMCPVCLRFDSASNTCSWVGC-------- 457

Query: 201 DSCGMSCHLECALKNERSGIGKDRCYSGLDGS----FYCISCRKVNDLLGCWKKQLVVAK 256
           D C   CH  C +  +++ I       G  G+    F+CI C   +++ G  K   V   
Sbjct: 458 DVCSHWCHAACGI--QKNLIKPGHSLKGQRGTTEMMFHCIGCAHKSEMFGFVKDVFVCCA 515

Query: 257 NTRRVDILCYRLSLGQKLVNATE--KYKNLSKIVDDAVKMLED-EVGPL 302
               ++ L   L   +K+   ++  K K L    ++ VK LE  ++ PL
Sbjct: 516 KNWGLETLIKELDCVRKVFRGSDDAKGKALHLKANEMVKKLESKQISPL 564

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	746
356562279	737	PREDICTED: protein VERNALIZATION INSENSI	0.982	0.994	0.656	0.0
356546032	736	PREDICTED: protein VERNALIZATION INSENSI	0.981	0.994	0.657	0.0
255580419	710	conserved hypothetical protein [Ricinus	0.942	0.990	0.668	0.0
225446034	738	PREDICTED: protein VERNALIZATION INSENSI	0.970	0.981	0.653	0.0
357479623	730	Protein VERNALIZATION INSENSITIVE [Medic	0.961	0.982	0.634	0.0
449457169	737	PREDICTED: protein VERNALIZATION INSENSI	0.970	0.982	0.589	0.0
224126067	679	predicted protein [Populus trichocarpa]	0.891	0.979	0.632	0.0
297735403	652	unnamed protein product [Vitis vinifera]	0.860	0.984	0.604	0.0
380710177	739	vernalization insensitive 3 [Solanum lyc	0.970	0.979	0.576	0.0
449507054	734	PREDICTED: protein VERNALIZATION INSENSI	0.978	0.994	0.585	0.0

>gi|356562279|ref|XP_003549399.1| PREDICTED: protein VERNALIZATION INSENSITIVE 3-like [Glycine max]

 Score =  985 bits (2547), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 485/739 (65%), Positives = 579/739 (78%), Gaps = 6/739 (0%)

Query: 12  MVSLSMAIGVALDPSKCSKLSMEEKRELVYQLSKQSHSASETLRSWTRQEILQILCAELG 71
           M + S   G+ALDPSKCSKLSMEEKRELVY++SK SH ASE L+SW+RQEILQILCAE+G
Sbjct: 1   MATDSSFEGLALDPSKCSKLSMEEKRELVYEVSKWSHGASEMLQSWSRQEILQILCAEMG 60

Query: 72  KERKYTGLTKLKIIENLLKLVSEKKSGEREAKTDIEPQSSPASSQRPSKRQRKNDNPARL 131
           KERKYTGLTKLKIIENLLK+VSEKKSG  E  TD EPQSSPA  Q+P+KRQRK++NP+ +
Sbjct: 61  KERKYTGLTKLKIIENLLKIVSEKKSGGNETATDPEPQSSPAPGQKPAKRQRKSENPSHV 120

Query: 132 PVPVTDAAMNNSGSDLVNAIYCKNSACRATLRKEDVFCKRCSCCICRKYDDNKDPSLWLT 191
           PVP T   +NN G D VN  YCKNSAC+ATL +   FCKRCSCCIC +YDDNKDPSLWL 
Sbjct: 121 PVPATSITVNNGG-DSVNTAYCKNSACKATLNQSYAFCKRCSCCICHQYDDNKDPSLWLI 179

Query: 192 CSSEPPFGGDSCGMSCHLECALKNERSGIGKDRCYSGLDGSFYCISCRKVNDLLGCWKKQ 251
           CSSE PF G SCG+SCHLECALK++ SGI KD  +  LDG FYC+SC KVNDLLGCW+KQ
Sbjct: 180 CSSENPFPGVSCGLSCHLECALKHDGSGIAKDGEHPKLDGGFYCVSCGKVNDLLGCWRKQ 239

Query: 252 LVVAKNTRRVDILCYRLSLGQKLVNATEKYKNLSKIVDDAVKMLEDEVGPLTGLPVKMGR 311
           L+VAK+TRRVDILCYR+SL Q+L+  TE Y+ L KIVD+AVK LE EVGPL G PVK+GR
Sbjct: 240 LMVAKDTRRVDILCYRVSLSQRLLQGTEVYEELYKIVDEAVKKLEPEVGPLIGSPVKIGR 299

Query: 312 GIVNRLSSGPEVQKLCACAVESLDKMISNTILPN---PSVQGSNVIVPNMVKFEDVRATS 368
           GIVNRLSSGPEVQKLC  A+ESLD ++S  ILP+   P+ Q ++++ PNMV+FEDV AT+
Sbjct: 300 GIVNRLSSGPEVQKLCGFALESLDSLLSKRILPSSPKPTTQDAHLLAPNMVRFEDVTATT 359

Query: 369 LTVVLGSEDPSPGNIISYTLWHRRAHE-GFPARPTCTLFAPNTRFVVTGLCPATEYQFKV 427
           LT++LGSE+PS   I  YTLWHR+  +  +P  PTCT   PN RF V+GL P TEY FKV
Sbjct: 360 LTIILGSEEPSGEIIAGYTLWHRKVDDVDYPTDPTCTSLLPNRRFRVSGLIPGTEYSFKV 419

Query: 428 VSSNGTTELGRCEIWFSTGSSRDEVTNCSVIERSQSPATNCSSLSNPSSVEDETNNVTPD 487
           VS N   E G CE+  ST    +EV NCS  ERSQSP TNCSSLSNPSSVEDETNN  P 
Sbjct: 420 VS-NDLRESGMCEVQVSTEHGEEEVPNCSATERSQSPVTNCSSLSNPSSVEDETNNCNPY 478

Query: 488 RDPNDAQVNNYYTYSKETDKIASTNLCDDAIDCTVLGRGTTPADAVSLLDEERANNIDGS 547
            D  D + ++Y +Y K+++++AS NL +D I+C+ LG    P DA SL D++ A     S
Sbjct: 479 SDLTDNRADHYPSYHKDSNQLASGNLSNDVINCSNLGSVGLPPDADSLSDKQHAGGTTAS 538

Query: 548 MPDSHVQKLESKHPPEGRIIEEMSTDNGVDTPVPTGMECVPYMRSLEAGLPITPCKIEIL 607
           +P S V KLE+KH PE ++ E+MSTD+G+++P  TG ECVP + S + GLP TPCK+E L
Sbjct: 539 IPSSDVLKLENKHSPEEQVTEDMSTDDGLNSPALTGRECVPLVGSSKGGLPNTPCKLETL 598

Query: 608 KDAQARNGRSKLNSKDMENGTGNRDEPQDGSTSKKRSSESRDEDCTANGLSDMDFEHCVK 667
           KD   +N RSK + KD EN +G R+ PQDGSTSKKRS E ++E   ANG SD DFE+ VK
Sbjct: 599 KDGPGKNKRSKSSGKDQENVSGKREGPQDGSTSKKRSGERQEEGRVANGFSDRDFEYYVK 658

Query: 668 VIRWLECEGHIERNFRQKFLTWYSLRATPQEVRIVKVFVDTFVEDPASLAEQLMDTFSDC 727
           VIRWLECEGHIE+NFRQKFLTWYSLRAT QEVRIVK+++DTF+EDPASLAEQL+DTFS+C
Sbjct: 659 VIRWLECEGHIEKNFRQKFLTWYSLRATSQEVRIVKIYIDTFLEDPASLAEQLVDTFSEC 718

Query: 728 ISSRRSSVVPAGFCMKLWH 746
           ISS+R+SVVPAGFCMKLWH
Sbjct: 719 ISSKRTSVVPAGFCMKLWH 737

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356546032|ref|XP_003541436.1| PREDICTED: protein VERNALIZATION INSENSITIVE 3-like [Glycine max]

 Score =  983 bits (2540), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 486/739 (65%), Positives = 578/739 (78%), Gaps = 7/739 (0%)

Query: 12  MVSLSMAIGVALDPSKCSKLSMEEKRELVYQLSKQSHSASETLRSWTRQEILQILCAELG 71
           M + S   G+ALDPSKCSKLSMEEKRELVY++S  SH ASE L+SW+RQEILQILCAE+G
Sbjct: 1   MATDSSFEGLALDPSKCSKLSMEEKRELVYEVSNWSHGASEMLQSWSRQEILQILCAEMG 60

Query: 72  KERKYTGLTKLKIIENLLKLVSEKKSGEREAKTDIEPQSSPASSQRPSKRQRKNDNPARL 131
           KERKYTGLTKLKIIENLLK+VSEKKSG  E  TD EPQSSPA  Q+P+KRQRK++NP+ +
Sbjct: 61  KERKYTGLTKLKIIENLLKIVSEKKSGGNETATDPEPQSSPAPGQKPAKRQRKSENPSHI 120

Query: 132 PVPVTDAAMNNSGSDLVNAIYCKNSACRATLRKEDVFCKRCSCCICRKYDDNKDPSLWLT 191
           PVP T   +NN G D +N  +CKNSAC+ATL + D FCKRCSCCIC +YDDNKDPSLWL 
Sbjct: 121 PVPATSVPVNNGG-DSINTTFCKNSACKATLNQSDAFCKRCSCCICHQYDDNKDPSLWLI 179

Query: 192 CSSEPPFGGDSCGMSCHLECALKNERSGIGKDRCYSGLDGSFYCISCRKVNDLLGCWKKQ 251
           CSSE PF G SCG+SCHLECALK++ SGIGKD     LDG FYC+SC K+NDLLGCW+KQ
Sbjct: 180 CSSENPFPGVSCGLSCHLECALKHDGSGIGKDGERPKLDGGFYCVSCWKINDLLGCWRKQ 239

Query: 252 LVVAKNTRRVDILCYRLSLGQKLVNATEKYKNLSKIVDDAVKMLEDEVGPLTGLPVKMGR 311
           L+VAK+TRRVDILCYR+SL Q+L+  TE Y+ L KIVD+AVK LE EVGPLTG PVK+GR
Sbjct: 240 LMVAKDTRRVDILCYRVSLSQRLLQGTEMYEELYKIVDEAVKKLEPEVGPLTGSPVKIGR 299

Query: 312 GIVNRLSSGPEVQKLCACAVESLDKMISNTILP---NPSVQGSNVIVPNMVKFEDVRATS 368
           GIVNRLSSGPEVQKLC  A+ESLD + S  ILP    P+ Q + ++ PNM++FEDV AT+
Sbjct: 300 GIVNRLSSGPEVQKLCGFALESLDSL-SKRILPLSPKPTNQDAYLLAPNMLRFEDVTATT 358

Query: 369 LTVVLGSEDPSPGNIISYTLWHRRAHE-GFPARPTCTLFAPNTRFVVTGLCPATEYQFKV 427
           LT++LGSE+PS   +  YTLWHR+  +  +P  PTCT   PN RF V+GL P TEY FKV
Sbjct: 359 LTIILGSEEPSGEILAGYTLWHRKVDDVDYPMDPTCTSLLPNRRFSVSGLIPGTEYSFKV 418

Query: 428 VSSNGTTELGRCEIWFSTGSSRDEVTNCSVIERSQSPATNCSSLSNPSSVEDETNNVTPD 487
           VS N   E G CE+  ST    +EV NCS  ERSQSP TNCSSLSNPSSVEDETNN  P 
Sbjct: 419 VS-NDLRESGMCEVQVSTEHGEEEVPNCSATERSQSPVTNCSSLSNPSSVEDETNNCNPY 477

Query: 488 RDPNDAQVNNYYTYSKETDKIASTNLCDDAIDCTVLGRGTTPADAVSLLDEERANNIDGS 547
            D  D + ++Y +Y K+++K+AS NL +DAI+C+ LG    P DA SL D++ A     S
Sbjct: 478 SDLTDNRADHYPSYHKDSNKLASGNLSNDAINCSNLGGAGLPPDADSLSDKQHAGGTTAS 537

Query: 548 MPDSHVQKLESKHPPEGRIIEEMSTDNGVDTPVPTGMECVPYMRSLEAGLPITPCKIEIL 607
           +P S V KLE+KH PE +I E+MSTD+G+ +P  TG ECVP + S E GLP TPCK+E L
Sbjct: 538 IPSSDVLKLENKHSPEEQITEDMSTDDGLISPALTGRECVPLVGSSEGGLPNTPCKLETL 597

Query: 608 KDAQARNGRSKLNSKDMENGTGNRDEPQDGSTSKKRSSESRDEDCTANGLSDMDFEHCVK 667
           KD   +N RSK + KD EN +G R+ PQDGSTSKKRS E ++E   ANG SD DFE+ VK
Sbjct: 598 KDGPGKNKRSKSSGKDQENVSGKREGPQDGSTSKKRSGERQEEGRVANGFSDRDFEYYVK 657

Query: 668 VIRWLECEGHIERNFRQKFLTWYSLRATPQEVRIVKVFVDTFVEDPASLAEQLMDTFSDC 727
           VIRWLECEGHIE+NFRQKFLTWYSLRATPQEVRIVK+++DTF+EDPASLAEQL+DTFS+C
Sbjct: 658 VIRWLECEGHIEKNFRQKFLTWYSLRATPQEVRIVKIYIDTFLEDPASLAEQLVDTFSEC 717

Query: 728 ISSRRSSVVPAGFCMKLWH 746
           +SS+R+SVVPAGFCMKLWH
Sbjct: 718 LSSKRTSVVPAGFCMKLWH 736

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255580419|ref|XP_002531036.1| conserved hypothetical protein [Ricinus communis] gi|223529389|gb|EEF31353.1| conserved hypothetical protein [Ricinus communis]

 Score =  962 bits (2488), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 482/721 (66%), Positives = 573/721 (79%), Gaps = 18/721 (2%)

Query: 33  MEEKRELVYQLSKQSHSASETLRSWTRQEILQILCAELGKERKYTGLTKLKIIENLLKLV 92
           M+EKRELVYQLSK S  ASE L+SW+RQEILQILC E+GKERKYTGLTKLKIIE+LLK+V
Sbjct: 1   MDEKRELVYQLSKCS-GASEMLQSWSRQEILQILCVEMGKERKYTGLTKLKIIEHLLKIV 59

Query: 93  SEKKSGEREAKTDIEPQSSPASSQRPSKRQRKNDNPARLPVPVTDAAMNNSGSDLVNAIY 152
           SEKK+GE E  TD E +SSPAS +R SKRQRK DNP+RL VPV   A +N+G+DL N IY
Sbjct: 60  SEKKAGECEVTTDAETESSPASVRRSSKRQRKIDNPSRLTVPVNYTATSNAGNDLANVIY 119

Query: 153 CKNSACRATLRKEDVFCKRCSCCICRKYDDNKDPSLWLTCSSEPPFGGDSCGMSCHLECA 212
           CKNSACRATL+++D FCKRCSCCIC KYDDNKDPSLWLTCSS+PPF   +CGMSCHL+CA
Sbjct: 120 CKNSACRATLKQDDAFCKRCSCCICYKYDDNKDPSLWLTCSSDPPFQAVTCGMSCHLDCA 179

Query: 213 LKNERSGIGKDRCYSGLDGSFYCISCRKVNDLLGCWKKQLVVAKNTRRVDILCYRLSLGQ 272
           LK+E SGIGKD    G DGSF CI+C KVNDLLGCW+KQL++AK+TRRVDILCYRLSL Q
Sbjct: 180 LKHESSGIGKD----GYDGSFRCIACWKVNDLLGCWRKQLLMAKDTRRVDILCYRLSLSQ 235

Query: 273 KLVNATEKYKNLSKIVDDAVKMLEDEVGPLTGLPVKMGRGIVNRLSSGPEVQKLCACAVE 332
           KL++ + KY+NL +IVD+AVK LEDEVGPLTGLPVKMGRGIVNRLSSGPEVQKLCA A+E
Sbjct: 236 KLISRSGKYQNLYEIVDEAVKKLEDEVGPLTGLPVKMGRGIVNRLSSGPEVQKLCAFALE 295

Query: 333 SLDKMISNTI---LPNPSVQGSNVIVPNMVKFEDVRATSLTVVLGSEDPSPGNIISYTLW 389
           SLDK++S+T       P +   N+    +V+ EDV +TSLTVVLGSED S   ++ YTLW
Sbjct: 296 SLDKLLSSTTAHSFSAPVITDLNLTASTIVRIEDVNSTSLTVVLGSEDTSLDTVVGYTLW 355

Query: 390 HRRAHE-GFPARPTCTLFAPNTRFVVTGLCPATEYQFKVVSSNGT-TELGRCEIWFSTGS 447
           HR+  + G+PA PTCTLF PNTRFVVTGLC AT+Y FK VS N    E+G CE+   T  
Sbjct: 356 HRKTRDTGYPAEPTCTLFVPNTRFVVTGLCSATDYHFKAVSFNDERREMGTCEVRCCT-- 413

Query: 448 SRDEVTNCSVIERSQSPATNCSSLSNPSSVEDETNNVTPDRDPNDAQVNNYYTYSKETDK 507
            +DEV NCS +ERSQSPATNCSSLSNPSSVEDETN+  P  D    +  NY +Y K+ +K
Sbjct: 414 -QDEVPNCSAVERSQSPATNCSSLSNPSSVEDETNHNAPCGDQTVNRAYNYPSYCKDGNK 472

Query: 508 IASTNLCDDAIDCTVLGRGTTPADAVSLLDEERANNIDGSMPDSHVQKLESKHPPEGRII 567
           I S+N+ +  I C  +G G T  +AV LLDEE    +  SMP   +QKL+++H  E +I+
Sbjct: 473 IVSSNVLNGIISCAGMGEGRTLTNAVPLLDEEHTVQVVTSMPCCDMQKLQNEHSHEDQIV 532

Query: 568 EEMSTDNGVDTPVPTGMECVPY--MRSLEAGLPITPCKIEILKDAQARNGRSKLNSKDME 625
           +E ST+NG D P+ T +ECVP+    ++E  LPITPCK++++KD Q R+GRSK ++KD+ 
Sbjct: 533 DETSTENGSDAPIHTDLECVPFEGKGNIETSLPITPCKLDMIKDGQGRHGRSKSSNKDLL 592

Query: 626 NGTGNRDEPQDGSTSKKRSSESRDEDCTANGLSDMDFEHCVKVIRWLECEGHIERNFRQK 685
           NGTG  +EPQD STSKKRS E RDE+CT    SD DFE+ VKVIR LECEGHIE+NFRQK
Sbjct: 593 NGTGKGEEPQDASTSKKRSGERRDEECTH---SDRDFEYYVKVIRLLECEGHIEKNFRQK 649

Query: 686 FLTWYSLRATPQEVRIVKVFVDTFVEDPASLAEQLMDTFSDCISSRRSSVVPAGFCMKLW 745
           FLTWYSLRATPQEVR+VK FVDTF++DPASLAEQL+DTFS+CISSRRSSVVPAGFCMKLW
Sbjct: 650 FLTWYSLRATPQEVRVVKAFVDTFIQDPASLAEQLVDTFSECISSRRSSVVPAGFCMKLW 709

Query: 746 H 746
           H
Sbjct: 710 H 710

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225446034|ref|XP_002270335.1| PREDICTED: protein VERNALIZATION INSENSITIVE 3-like [Vitis vinifera]

 Score =  961 bits (2484), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 480/735 (65%), Positives = 578/735 (78%), Gaps = 11/735 (1%)

Query: 20  GVALDPSKCSKLSMEEKRELVYQLSKQSHSASETLRSWTRQEILQILCAELGKERKYTGL 79
           G+  DPSK +KLSMEEKRELVY +SK S    E L+SW+RQEILQILCAE+GKERKYTGL
Sbjct: 7   GIVYDPSKINKLSMEEKRELVYAVSKWSRGGPEMLQSWSRQEILQILCAEMGKERKYTGL 66

Query: 80  TKLKIIENLLKLVSEKKSGEREAKTDIE----PQSSPASSQRPSKRQRKNDNPARLPVPV 135
           TKLKIIE+LL++VSEK S E+E  T+ E     Q S A++QR SKRQRK D+P+RLPV  
Sbjct: 67  TKLKIIEHLLRVVSEKNSVEQEVVTNHEINHESQPSAATNQRTSKRQRKADHPSRLPVAA 126

Query: 136 TDAAMNNSGSDLVNAIYCKNSACRATLRKEDVFCKRCSCCICRKYDDNKDPSLWLTCSSE 195
            + +++N   DL NAIYCKN ACRA L +E  FCKRCSCCIC +YDDNKDPSLWLTCSS+
Sbjct: 127 NNHSISNGDGDLGNAIYCKNLACRANLSREYEFCKRCSCCICHQYDDNKDPSLWLTCSSD 186

Query: 196 PPFGGDSCGMSCHLECALKNERSGIGKDRCYSGLDGSFYCISCRKVNDLLGCWKKQLVVA 255
           PPF G SCGMSCHLECA K+E+SGI KD  +  LDGSFYC+SC KVND+LGCW+KQL++A
Sbjct: 187 PPFQGVSCGMSCHLECAFKHEKSGIAKDGRHVRLDGSFYCVSCGKVNDMLGCWRKQLMMA 246

Query: 256 KNTRRVDILCYRLSLGQKLVNATEKYKNLSKIVDDAVKMLEDEVGPLTGLPVKMGRGIVN 315
           K TRRVDILCYR+SL QKL+N T+KY+ L +IV++AVK LE EVGPLTGLPVK  RGIVN
Sbjct: 247 KETRRVDILCYRVSLSQKLLNGTKKYQKLYEIVEEAVKKLEAEVGPLTGLPVKTARGIVN 306

Query: 316 RLSSGPEVQKLCACAVESLDKMISNTI---LPNPSVQGSNVIVPNMVKFEDVRATSLTVV 372
           RLSSGPEVQ+LCA A+ESLD ++SN+     P P +Q + ++ P+ ++FEDV +TSLTV+
Sbjct: 307 RLSSGPEVQRLCALALESLDSVLSNSHPRPAPGPKIQDAGLVAPS-IRFEDVCSTSLTVI 365

Query: 373 LGSEDPSPGNIISYTLWHRRAHE-GFPARPTCTLFAPNTRFVVTGLCPATEYQFKVVSSN 431
           LGSED S  N+ISY LWHR++++  +PA P CT+ APN RF  + L P+TEY FKVVS  
Sbjct: 366 LGSEDSSTDNVISYKLWHRKSNDLEYPAEPACTMLAPNKRFTFSDLTPSTEYVFKVVSFQ 425

Query: 432 GTTELGRCEIWFSTGSSRDEVTNCSVIERSQSPATNCSSLSNPSSVEDETNNVTPDRDPN 491
            T ELG  E+ FST SS D++    V ERSQSPATNCSSLSNPSSVEDETNNVTP  D N
Sbjct: 426 DTRELGMGEVQFSTSSSGDDIPKSLVAERSQSPATNCSSLSNPSSVEDETNNVTPYHDQN 485

Query: 492 DAQVNNYYTYSKETDKIASTNLCDDAIDCTVLGRGTTPADAVSLLDEERANNIDGSMPDS 551
           + + +NY  Y K TDK  STNL ++A +CT   +   PAD+V + D+ER   +  SMP  
Sbjct: 486 ENREDNYPGYCKGTDKTVSTNLSNEATNCTGTDQEGNPADSVFVSDDERDLRVVVSMP-- 543

Query: 552 HVQKLESKHPPEGRIIEEMSTDNGVDTPVPTGMECVPYMRSLEAGLPITPCKIEILKDAQ 611
            V K ++K   E +IIEEMSTD   +TPV TGMECVP++ S EAGLPITPCK+EI KD  
Sbjct: 544 KVLKPDNKTSLECQIIEEMSTDKEANTPVRTGMECVPFVGSSEAGLPITPCKLEIFKDGL 603

Query: 612 ARNGRSKLNSKDMENGTGNRDEPQDGSTSKKRSSESRDEDCTANGLSDMDFEHCVKVIRW 671
            RNGR K ++ D+++G+G  DEPQ GS+SKKRS+E +DE+C ANG SD DFE+ VKVIRW
Sbjct: 604 GRNGRPKPSTMDLDDGSGKGDEPQAGSSSKKRSAERQDEECAANGPSDRDFEYYVKVIRW 663

Query: 672 LECEGHIERNFRQKFLTWYSLRATPQEVRIVKVFVDTFVEDPASLAEQLMDTFSDCISSR 731
           LECEGH+E+NFRQKFLTWYSLRATPQEVRIVKVFVDT +EDPASLAEQL+DTFS+ ISS+
Sbjct: 664 LECEGHVEKNFRQKFLTWYSLRATPQEVRIVKVFVDTLIEDPASLAEQLIDTFSETISSK 723

Query: 732 RSSVVPAGFCMKLWH 746
           RSSVVPAGFCMKLWH
Sbjct: 724 RSSVVPAGFCMKLWH 738

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357479623|ref|XP_003610097.1| Protein VERNALIZATION INSENSITIVE [Medicago truncatula] gi|355511152|gb|AES92294.1| Protein VERNALIZATION INSENSITIVE [Medicago truncatula]

 Score =  914 bits (2362), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 464/731 (63%), Positives = 557/731 (76%), Gaps = 14/731 (1%)

Query: 21  VALDPSKCSKLSMEEKRELVYQLSKQSH-SASETLRSWTRQEILQILCAELGKERKYTGL 79
           VALDPSK SKLSMEEKRELVY++SK SH  ASE L+SW+RQEILQILCAE+GKERKYTGL
Sbjct: 9   VALDPSKFSKLSMEEKRELVYEISKSSHDGASEILQSWSRQEILQILCAEMGKERKYTGL 68

Query: 80  TKLKIIENLLKLVSEKKSGEREAKTDIEPQSSPASSQRPSKRQRKNDNPARLPVPVTDAA 139
           TK+KIIENLLK+VSEKKS   +  TD EP S P + Q+P+KRQRK +NP+RL VP  +  
Sbjct: 69  TKVKIIENLLKIVSEKKSSGHDIATDPEPHSFPENGQKPAKRQRKIENPSRLAVPENNVF 128

Query: 140 MNNSGSDLVNAIYCKNSACRATLRKEDVFCKRCSCCICRKYDDNKDPSLWLTCSSEPPFG 199
           +NNSG    N  YCKNSAC+ATL + D FCKRCSCCIC +YDDNKDPSLWL CSSE PF 
Sbjct: 129 VNNSGDVNHNTSYCKNSACKATLNQGDAFCKRCSCCICHQYDDNKDPSLWLICSSEAPFP 188

Query: 200 GDSCGMSCHLECALKNERSGIGKDRCYSGLDGSFYCISCRKVNDLLGCWKKQLVVAKNTR 259
           G SCG+SCHLECALK++ SGIGKD      DG FYC+SC KVNDLLGCW+KQL+VAK+ R
Sbjct: 189 GVSCGLSCHLECALKHDGSGIGKDGKRPKHDGGFYCVSCGKVNDLLGCWRKQLMVAKDAR 248

Query: 260 RVDILCYRLSLGQKLVNATEKYKNLSKIVDDAVKMLEDEVGPLTGLPVKMGRGIVNRLSS 319
           RVDILCYR+SL QKL+  TE Y+ L +IVD+AVK LE EVGPLTG P+K+GRGIVNRLSS
Sbjct: 249 RVDILCYRVSLSQKLLQGTEMYRELYEIVDEAVKKLEPEVGPLTGSPLKIGRGIVNRLSS 308

Query: 320 GPEVQKLCACAVESLDKMISNTI---LPNPSVQGSNVIVPNMVKFEDVRATSLTVVLGSE 376
           GPEVQKLC  A+ESLD M+S  I    PNP++Q ++++ PNMV+FEDV ATSLTV+L SE
Sbjct: 309 GPEVQKLCGVALESLDSMLSKRISPLSPNPTIQDASLLAPNMVRFEDVTATSLTVILCSE 368

Query: 377 DPSPGNIISYTLWHRRAHE-GFPARPTCTLFAPNTRFVVTGLCPATEYQFKVVSSNGTTE 435
           D S  N  SY +WHR+A +  +P  PTCT+  PN R  + GL P TEY+FK V SN    
Sbjct: 369 DASGENSASYAVWHRKADDVNYPLDPTCTILLPNRRLGIEGLLPDTEYRFKFV-SNDPRM 427

Query: 436 LGRCEIWFSTGSSRDEVTNCSVIERSQSPATNCSSLSNPSSVEDETNNVTPDRDPNDAQV 495
           L  CE+   T    DEV NCS  ERSQSP TN SSLSNPSSVEDETN+     D  D + 
Sbjct: 428 LCACEVQVLTAHGEDEVPNCSATERSQSPVTNGSSLSNPSSVEDETNH----SDQTDNRS 483

Query: 496 NNYYTYSKETDKIASTNLCDDAIDCTVLGRGTTPADAVSLLDEERANNIDGSMPDSHVQK 555
           +NY +Y K++D++A  NL +DA +C+ LG    P +A SL D++        +  S V K
Sbjct: 484 DNYPSYHKDSDQLAPGNLSNDANNCSGLGGVGIPNNADSLSDKQADVGTTAIIASSDVPK 543

Query: 556 LESKHPPEGRIIEEMSTDNGVDTPVPTGMECVPYMRSLEAGLPITPCKIEILKDAQARNG 615
           LE+KH  E ++ E+MST++G    VPTG ECVP + S + GLP TPCK+EI+KD + R G
Sbjct: 544 LENKHSQEEQVAEDMSTEDG---SVPTGRECVPLVGSSKGGLPNTPCKLEIIKDGRGRKG 600

Query: 616 RSKLNSKDMENGTGNRDEPQDGSTSKKRSSESRDEDCTANGLSDMDFEHCVKVIRWLECE 675
           RSK + KD+ENG+G R+  +DGSTSKKRSSE +DE C AN  SD DFE+ VKVIR LECE
Sbjct: 601 RSKFSGKDLENGSGKRNVLRDGSTSKKRSSERQDEGCKANSFSDQDFEYYVKVIRRLECE 660

Query: 676 GHIERNFRQKFLTWYSLRATPQEVRIVKVFVDTFVEDPASLAEQLMDTFSDCISSRRSSV 735
           GHIE+NFRQKFLTWYSLRAT QE+RIVK++VDTF+ED ASLAEQL+DTFS+C+S++RSS 
Sbjct: 661 GHIEKNFRQKFLTWYSLRATSQEIRIVKIYVDTFLEDSASLAEQLVDTFSECVSNKRSS- 719

Query: 736 VPAGFCMKLWH 746
           VPAGFCMKLWH
Sbjct: 720 VPAGFCMKLWH 730

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449457169|ref|XP_004146321.1| PREDICTED: protein VERNALIZATION INSENSITIVE 3-like [Cucumis sativus] gi|449502927|ref|XP_004161782.1| PREDICTED: protein VERNALIZATION INSENSITIVE 3-like [Cucumis sativus]

 Score =  884 bits (2284), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 431/731 (58%), Positives = 560/731 (76%), Gaps = 7/731 (0%)

Query: 21  VALDPSKCSKLSMEEKRELVYQLSKQSHSASETLRSWTRQEILQILCAELGKERKYTGLT 80
            AL+P K S +S+E+KR LVY++S Q H A E L+SW+RQEIL+ILCAE+GKERKYTGLT
Sbjct: 9   AALEPLKSSMMSLEKKRNLVYEISDQPH-APELLQSWSRQEILEILCAEMGKERKYTGLT 67

Query: 81  KLKIIENLLKLVSEKKSGEREAKTDIEPQSSPASSQRPSKRQRKNDNPARLPVPVTDAAM 140
           KLKIIENLLK+V +KKSG  E  TD++ QSSP  S   SKRQRK D PARLPVPV ++ +
Sbjct: 68  KLKIIENLLKIVGKKKSGSTEDVTDLDNQSSPCPSPNISKRQRKIDQPARLPVPVNNSPI 127

Query: 141 NNSGSDLVNAIYCKNSACRATLRKEDVFCKRCSCCICRKYDDNKDPSLWLTCSSEPPFGG 200
           +N+ +D   A+YC+NSAC+A + ++D FCKRCSCCIC +YDDNKDPSLWL+CSS+PPF  
Sbjct: 128 SNTRTDSNIAVYCRNSACKANINQDDKFCKRCSCCICYQYDDNKDPSLWLSCSSDPPFQS 187

Query: 201 DSCGMSCHLECALKNERSGIGKDRCYSGLDGSFYCISCRKVNDLLGCWKKQLVVAKNTRR 260
            SC MSCHLECALK+E+SGI + +  +G++G+F C+SC KVNDL+GCW+KQL+ AK TRR
Sbjct: 188 TSCRMSCHLECALKHEKSGISRGQ-QTGIEGTFCCVSCGKVNDLIGCWRKQLMKAKETRR 246

Query: 261 VDILCYRLSLGQKLVNATEKYKNLSKIVDDAVKMLEDEVGPLTGLPVKMGRGIVNRLSSG 320
           V ILCYR+SL +KL++  EK++++ +IVD+AVK LE EVGPL G+PV  GRGIVNRLSSG
Sbjct: 247 VAILCYRISLSKKLLSEDEKFQDVYQIVDEAVKKLEAEVGPLAGVPVGTGRGIVNRLSSG 306

Query: 321 PEVQKLCACAVESLDKMISNTI---LPNPSVQGSNVIVPNMVKFEDVRATSLTVVLGSED 377
           PEVQKLC+ A++SLD ++S  I   LP+  +Q +N++  N ++FEDV AT + VV+G+ED
Sbjct: 307 PEVQKLCSLAIDSLDTLLSTKILHHLPSSMIQDTNLVATNFLRFEDVDATYVAVVVGTED 366

Query: 378 PSPGNIISYTLWHRRAHE-GFPARPTCTLFAPNTRFVVTGLCPATEYQFKVVSSNGTTEL 436
            S G  I Y LWHR+A E  +P  PTCTL  PN RFVV GL P++EY FK +S +GT +L
Sbjct: 367 VSCGETIGYRLWHRKAGETDYPIEPTCTLSQPNLRFVVRGLTPSSEYYFKAISFDGTGDL 426

Query: 437 GRCEIWFSTGSSRDEVTNCSVIERSQSPATNCSSLSNPSSVEDETNNVTPDRDPNDAQVN 496
           G CE+  ST   R++  +C VIERSQSP TN S LSNPSSVEDETNN+ P  D  D+Q  
Sbjct: 427 GTCEVQVSTAIPREDDASCLVIERSQSPVTNFSELSNPSSVEDETNNIVPCSDQTDSQTG 486

Query: 497 NYYTYSKETDKIASTNLCDDAIDCTVLGRGTTPADAVSLLDEERANNIDGSMPDSHVQKL 556
           ++ +Y KE++KI +TN  +D I+CT +    T  D+VS LDEE        +PD +V KL
Sbjct: 487 SFLSYCKESNKIITTNQSEDRINCTDVSGIGTAKDSVSSLDEEHVTRKSSMLPDPNVSKL 546

Query: 557 ESKHPPEGRIIEEMSTDN-GVDTPVPTGMECVPYMRSLEAGLPITPCKIEILKDAQARNG 615
           E +H  + +IIE  ++ N G ++ +  G +  P++ S EAGLP+TPCK+EILKD   R+G
Sbjct: 547 EDRHSSQVQIIEGTTSMNKGSNSAIQQGTKSTPFVSSSEAGLPVTPCKMEILKDVLGRSG 606

Query: 616 RSKLNSKDMENGTGNRDEPQDGSTSKKRSSESRDEDCTANGLSDMDFEHCVKVIRWLECE 675
           RSK ++KD ++     +E ++GSTSKKR++E +D DCTANG+SD DFE+ VK+IRWLECE
Sbjct: 607 RSKSSTKDRDDKGSGGEELRNGSTSKKRNAERQDVDCTANGISDKDFEYYVKLIRWLECE 666

Query: 676 GHIERNFRQKFLTWYSLRATPQEVRIVKVFVDTFVEDPASLAEQLMDTFSDCISSRRSSV 735
           GHIE+NFRQKFLTWYSLRAT QEVRIVK FVD F+EDP++LAEQL+DTFS+CISS+++  
Sbjct: 667 GHIEKNFRQKFLTWYSLRATTQEVRIVKAFVDNFIEDPSALAEQLVDTFSECISSKKTCA 726

Query: 736 VPAGFCMKLWH 746
           VP+GFCMKLWH
Sbjct: 727 VPSGFCMKLWH 737

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224126067|ref|XP_002329653.1| predicted protein [Populus trichocarpa] gi|222870534|gb|EEF07665.1| predicted protein [Populus trichocarpa]

 Score =  874 bits (2259), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 462/730 (63%), Positives = 535/730 (73%), Gaps = 65/730 (8%)

Query: 31  LSMEEKRELVYQLSKQSHSASETLRSWTRQEILQILCAELGKERKYTGLTKLKIIENLLK 90
           LSM EKRELVYQLSK    ASE L+SW+RQEILQILCAE+GKERKYTGLTKLKIIE+LLK
Sbjct: 1   LSMNEKRELVYQLSKWP-GASERLQSWSRQEILQILCAEMGKERKYTGLTKLKIIEHLLK 59

Query: 91  LVSEKKSGEREAKTDIEPQSSPASSQRPSKRQRKNDNPARLPVPVTDAAMNNSGSDLVNA 150
           LVSEKKSGE EA  D+E + S AS Q  SKRQRK DNP+R+PV ++  A NN  SD  N 
Sbjct: 60  LVSEKKSGECEASPDLETKISAASIQGASKRQRKTDNPSRVPVSLSCVATNNGISDQGNT 119

Query: 151 IYCKNSACRATLRKEDVFCKRCSCCICRKYDDNKDPSLWLTCSSEPPFGGDSCGMSCHLE 210
           +YCKNSACRATLR  D FCKRCSCCICR+YDDNKDPSLWL CSSEPPF G +C MSCHL+
Sbjct: 120 VYCKNSACRATLRPADTFCKRCSCCICRQYDDNKDPSLWLICSSEPPFQGVACSMSCHLD 179

Query: 211 CALKNERSGIGKDRCYSGLDGSFYCISCRKVNDLLGCWKKQLVVAKNTRRVDILCYRLSL 270
           CALK E SGIGK+  +  LDGSF C SC KVNDLLGCW+KQL++AK+TRRVDILCYR+SL
Sbjct: 180 CALKQESSGIGKNGRHGRLDGSFCCFSCGKVNDLLGCWRKQLMMAKDTRRVDILCYRVSL 239

Query: 271 GQKLVNATEKYKNLSKIVDDAVKMLEDEVGPLTGLPVKMGRGIVNRLSSGPEVQKLCACA 330
            QKL+N TEKY+ L +IV +A   LE EVGPL GLPVKMGRGIVNRLSSG EVQKLC  A
Sbjct: 240 SQKLLNGTEKYQKLLEIVGEAATKLEAEVGPLIGLPVKMGRGIVNRLSSGSEVQKLCTFA 299

Query: 331 VESLDKMISNTI---LPNPSVQG----------SNVIVPNMVKFEDVRATSLTVVLGSED 377
           +ESLDKM+SNTI   LP+P +QG          SN+I P  V FEDV +TSL +VLG ED
Sbjct: 300 LESLDKMLSNTISHPLPDPKMQGNHWCSHVSTDSNMIAPITVNFEDVHSTSLALVLGYED 359

Query: 378 PSPGNIISYTLWHRRAHE-GFPARPTCTLFAPNTRFVVTGLCPATEYQFKVVSSNGTTEL 436
            S  +I+ YTLWHR+ H+  +PA PTC LF PNTR+VV GL PATEY FKVV  NG  EL
Sbjct: 360 SSADDIVGYTLWHRKGHDLDYPAEPTCRLFLPNTRYVVAGLSPATEYHFKVVPFNGVREL 419

Query: 437 GRCEIWFSTGSSRDEVTNCSVIERSQSPATNCSSLSNPSSVEDETNNVTPDRDPNDAQVN 496
           G CE+  STG +++EV N S++ERSQSP TNCSSLSNPSSVEDETNN  P  D    + +
Sbjct: 420 GTCEVQCSTGMTQEEVLNYSIVERSQSPNTNCSSLSNPSSVEDETNNNPPCNDQIVNRAD 479

Query: 497 NYYTYSKETDKIASTNLCDDAIDCTVLGRGTTPADAVSLLDEERANNIDGSMPDSHVQKL 556
           NY T  K++DKI S N  + A++ +      T ADA+ LLDEE A  +            
Sbjct: 480 NYRTCLKDSDKIVSANKSNGALNFS-----GTLADAIPLLDEEHATQV------------ 522

Query: 557 ESKHPPEGRIIEEMSTDNGVDTPVPTGMECVPYMRSLEAGLPITPCKIEILKDAQARNGR 616
                        + TDNG D PV T MEC+P++ + EA LPITPCK+E+ KD Q RNGR
Sbjct: 523 -------------LITDNGSDAPVQTAMECMPFVSNSEASLPITPCKLEMHKDGQGRNGR 569

Query: 617 SKLNSKDMENGTGNRDEPQDGSTSKKRSSESRDEDCTANGLSDMDFEHCVKVIRWLECEG 676
            K + KD+ NG                    RDE+C ANG SD DFE+ VK+IRWLECEG
Sbjct: 570 FKSSDKDIVNG--------------------RDEECMANGNSDRDFEYYVKIIRWLECEG 609

Query: 677 HIERNFRQKFLTWYSLRATPQEVRIVKVFVDTFVEDPASLAEQLMDTFSDCISSRRSSVV 736
           HIE+NFRQKFLTWY LRAT QEVR+VK FVDTF+EDPASLAEQ++DTFS+CISSRRSSVV
Sbjct: 610 HIEKNFRQKFLTWYGLRATEQEVRVVKTFVDTFIEDPASLAEQIVDTFSECISSRRSSVV 669

Query: 737 PAGFCMKLWH 746
           P+GFCMKLWH
Sbjct: 670 PSGFCMKLWH 679

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297735403|emb|CBI17843.3| unnamed protein product [Vitis vinifera]

 Score =  857 bits (2215), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 442/731 (60%), Positives = 526/731 (71%), Gaps = 89/731 (12%)

Query: 20  GVALDPSKCSKLSMEEKRELVYQLSKQSHSASETLRSWTRQEILQILCAELGKERKYTGL 79
           G+  DPSK +KLSMEEKRELVY +SK S    E L+SW+RQEILQILCAE+GKERKYTGL
Sbjct: 7   GIVYDPSKINKLSMEEKRELVYAVSKWSRGGPEMLQSWSRQEILQILCAEMGKERKYTGL 66

Query: 80  TKLKIIENLLKLVSEKKSGEREAKTDIEPQSSPASSQRPSKRQRKNDNPARLPVPVTDAA 139
           TKLKIIE+LL++                             RQRK D+P+RLPV   + +
Sbjct: 67  TKLKIIEHLLRV-----------------------------RQRKADHPSRLPVAANNHS 97

Query: 140 MNNSGSDLVNAIYCKNSACRATLRKEDVFCKRCSCCICRKYDDNKDPSLWLTCSSEPPFG 199
           ++N   DL NAIYCKN ACRA L +E  FCKRCSCCIC +YDDNKDPSLWLTCSS+PPF 
Sbjct: 98  ISNGDGDLGNAIYCKNLACRANLSREYEFCKRCSCCICHQYDDNKDPSLWLTCSSDPPFQ 157

Query: 200 GDSCGMSCHLECALKNERSGIGKDRCYSGLDGSFYCISCRKVNDLLGCWKKQLVVAKNTR 259
           G SCGMSCHLECA K+E+SGI KD  +  LDGSFYC+SC KVND+LGCW+KQL++AK TR
Sbjct: 158 GVSCGMSCHLECAFKHEKSGIAKDGRHVRLDGSFYCVSCGKVNDMLGCWRKQLMMAKETR 217

Query: 260 RVDILCYRLSLGQKLVNATEKYKNLSKIVDDAVKMLEDEVGPLTGLPVKMGRGIVNRLSS 319
           RVDILCYR+SL QKL+N T+KY+ L +IV++AVK LE EVGPLTGLPVK  RGIVNRLSS
Sbjct: 218 RVDILCYRVSLSQKLLNGTKKYQKLYEIVEEAVKKLEAEVGPLTGLPVKTARGIVNRLSS 277

Query: 320 GPEVQKLCACAVESLDKMISNTI---LPNPSVQGSNVIVPNMVKFEDVRATSLTVVLGSE 376
           GPEVQ+LCA A+ESLD ++SN+     P P +Q + ++ P+ ++FEDV +TSLTV+LGSE
Sbjct: 278 GPEVQRLCALALESLDSVLSNSHPRPAPGPKIQDAGLVAPS-IRFEDVCSTSLTVILGSE 336

Query: 377 DPSPGNIISYTLWHRRAHE-GFPARPTCTLFAPNTRFVVTGLCPATEYQFKVVSSNGTTE 435
           D S  N+ISY LWHR++++  +PA P CT+ APN RF  + L P+TEY FKVVS   T E
Sbjct: 337 DSSTDNVISYKLWHRKSNDLEYPAEPACTMLAPNKRFTFSDLTPSTEYVFKVVSFQDTRE 396

Query: 436 LGRCEIWFSTGSSRDEVTNCSVIERSQSPATNCSSLSNPSSVEDETNNVTPDRDPNDAQV 495
           LG  E+ FST SS D++    V ERSQSPATNCSSLSNPSSVEDETNNVTP  D N+ + 
Sbjct: 397 LGMGEVQFSTSSSGDDIPKSLVAERSQSPATNCSSLSNPSSVEDETNNVTPYHDQNENRE 456

Query: 496 NNYYTYSKETDKIASTNLCDDAIDCTVLGRGTTPADAVSLLDEERANNIDGSMPDSHVQK 555
           +NY                                D+V + D+ER   +  SMP   V K
Sbjct: 457 DNY-------------------------------PDSVFVSDDERDLRVVVSMP--KVLK 483

Query: 556 LESKHPPEGRIIEEMSTDNGVDTPVPTGMECVPYMRSLEAGLPITPCKIEILKDAQARNG 615
            ++K   E +IIEEMSTD   +TPV TGMECVP++ S EAGLPITPCK+EI KD      
Sbjct: 484 PDNKTSLECQIIEEMSTDKEANTPVRTGMECVPFVGSSEAGLPITPCKLEIFKD------ 537

Query: 616 RSKLNSKDMENGTGNRDEPQDGSTSKKRSSESRDEDCTANGLSDMDFEHCVKVIRWLECE 675
                           DEPQ GS+SKKRS+E +DE+C ANG SD DFE+ VKVIRWLECE
Sbjct: 538 ----------------DEPQAGSSSKKRSAERQDEECAANGPSDRDFEYYVKVIRWLECE 581

Query: 676 GHIERNFRQKFLTWYSLRATPQEVRIVKVFVDTFVEDPASLAEQLMDTFSDCISSRRSSV 735
           GH+E+NFRQKFLTWYSLRATPQEVRIVKVFVDT +EDPASLAEQL+DTFS+ ISS+RSSV
Sbjct: 582 GHVEKNFRQKFLTWYSLRATPQEVRIVKVFVDTLIEDPASLAEQLIDTFSETISSKRSSV 641

Query: 736 VPAGFCMKLWH 746
           VPAGFCMKLWH
Sbjct: 642 VPAGFCMKLWH 652

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|380710177|gb|AFD98847.1| vernalization insensitive 3 [Solanum lycopersicum]

 Score =  833 bits (2151), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 424/735 (57%), Positives = 531/735 (72%), Gaps = 11/735 (1%)

Query: 20  GVALDPSKCSKLSMEEKRELVYQLSKQSHSASETLRSWTRQEILQILCAELGKERKYTGL 79
           G+ALDPSKCSKLSMEEKRELVY+LSKQSH A E L+SW+RQEILQILCAE+GKERKYTGL
Sbjct: 8   GIALDPSKCSKLSMEEKRELVYELSKQSHGAPEMLQSWSRQEILQILCAEMGKERKYTGL 67

Query: 80  TKLKIIENLLKLVSEKKSGEREAKTDIEPQSSPASSQRPSKRQRKNDNPARLPVPVTDAA 139
           TKLKIIENLLK+VSEKKS E+E  +++E Q S  S QR SKRQRK ++P+R P+    ++
Sbjct: 68  TKLKIIENLLKIVSEKKSLEQENTSNLEMQPSSESGQRSSKRQRKAEHPSRFPIEANTSS 127

Query: 140 MNNSGSDLVNAIYCKNSACRATLRKEDVFCKRCSCCICRKYDDNKDPSLWLTCSSEPPFG 199
             N+   L N +YCKN ACRA L  +D FCKRCSCCICR YDDNKDPSLWL CSSEPPF 
Sbjct: 128 TTNTNVSLANVVYCKNLACRAKLSGQDAFCKRCSCCICRNYDDNKDPSLWLICSSEPPFQ 187

Query: 200 GDSCGMSCHLECALKNERSGIGKDRCYSGLDGSFYCISCRKVNDLLGCWKKQLVVAKNTR 259
           GDSCGMSCHLECA+K+ +S I  D+   G +G+FYC+SC K NDLL   KKQL+VA++TR
Sbjct: 188 GDSCGMSCHLECAMKHGKSCITTDKSDKGNNGTFYCVSCGKANDLLSSLKKQLIVARDTR 247

Query: 260 RVDILCYRLSLGQKLVNATEKYKNLSKIVDDAVKMLEDEVGPLTGLPVKMGRGIVNRLSS 319
           RVDILCYRLSL QKL    E    L +++D+AV  LE +VGPLTGLPVKM RGIVNRLS 
Sbjct: 248 RVDILCYRLSLSQKLSFGAENCPKLYEVLDEAVNKLEADVGPLTGLPVKMARGIVNRLSF 307

Query: 320 GPEVQKLCACAVESLDKMISNTILPNPS---VQGSNVIVPNMVKFEDVRATSLTVVLGSE 376
           GP VQ+LC  AVE +D ++S  +   PS   V+   VI   +V+FEDV  +S+TVVL SE
Sbjct: 308 GPAVQQLCGLAVEYIDALLSERVSEMPSNAKVKDCEVIESKLVRFEDVFPSSVTVVLSSE 367

Query: 377 DPSPGNIISYTLWHRRAHEG-FPARPTCTLFAPNTRFVVTGLCPATEYQFKVVSSNGTTE 435
             S  N++ Y+LWHR+A E  +P  PT TLF+PNTRFV++ L PAT+Y  K+VS +   E
Sbjct: 368 GSSMENVVGYSLWHRKAVETEYPVEPTRTLFSPNTRFVLSDLMPATDYVLKIVSLDSKKE 427

Query: 436 LGRCEIWFSTGSSRDEVTNCSV----IERSQSPATNCSSLSNPSSVEDETNNVTPDRDPN 491
           LG  E+ F +  + +E++N ++    +ERSQSP TNCS+LSNPSSVEDETNN+    +  
Sbjct: 428 LGMFEVQFCSSKAENELSNLNMKSLEVERSQSPPTNCSNLSNPSSVEDETNNIVLCSNEA 487

Query: 492 DAQVNNYYTYSKETDKIASTNLCDDAIDCTVLGRGTTPADAVSLLDEERANNIDGSMPDS 551
           + + +N  +    TDK  ST+LC   +              VSL DEE +     S+P++
Sbjct: 488 ENRGDNCLSCCDNTDKAISTDLCCTTVAFASKSHIGNEEVMVSLGDEEDSIVKVTSLPNT 547

Query: 552 HVQKLESKHPPEGRIIEEMSTDNGVDTPVPTGMECVPYMRSLEAGLPITPCKIEILKDAQ 611
               LE+K   + +  EE STDNG + P+ T +E  P++ S++AGLPITPCK+E +K + 
Sbjct: 548 DAINLENKQCSDVQTTEETSTDNGSNAPLQTALEFAPFVGSVDAGLPITPCKMENVKGSL 607

Query: 612 ARNGRSKLNSKDMENGTGNRDEPQDGSTSKKRSSESRDEDCTANGLSDMDFEHCVKVIRW 671
            R G+S+  SKD++NG+G  D PQ G +SKKR  E   E+C   G  D DFE+ VKV+RW
Sbjct: 608 GRKGKSEHCSKDLDNGSGKEDGPQVGCSSKKRVGEWH-EECAGTG--DKDFEYYVKVVRW 664

Query: 672 LECEGHIERNFRQKFLTWYSLRATPQEVRIVKVFVDTFVEDPASLAEQLMDTFSDCISSR 731
           LEC  HI++ FRQKFLTWYSLRATPQ+VRIVK FVDT +EDPASLA QL+DTFSD ISS+
Sbjct: 665 LECGEHIDKTFRQKFLTWYSLRATPQDVRIVKAFVDTLIEDPASLAGQLVDTFSDVISSK 724

Query: 732 RSSVVPAGFCMKLWH 746
           R+SVVPAGFC+KLWH
Sbjct: 725 RASVVPAGFCLKLWH 739

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449507054|ref|XP_004162921.1| PREDICTED: protein VERNALIZATION INSENSITIVE 3-like [Cucumis sativus]

 Score =  826 bits (2134), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 433/739 (58%), Positives = 545/739 (73%), Gaps = 9/739 (1%)

Query: 12  MVSLSMAIGVALDPSKCSKLSMEEKRELVYQLSKQSHSASETLRSWTRQEILQILCAELG 71
           M + S   G   D  KCSKL+M+EKRELV+++SK S+ ASETL+SW+RQ+ILQ+LCAE+G
Sbjct: 1   MAADSSCDGAIFDSPKCSKLTMQEKRELVHEISK-SNVASETLQSWSRQDILQVLCAEMG 59

Query: 72  KERKYTGLTKLKIIENLLKLVSEKKSGEREAKTDIEPQSSPASSQRPSKRQRKNDNPARL 131
           KERKYTGLTK KII++LL+LVSEKKS   E   ++EPQ SP+   + +KRQRK+++ A+L
Sbjct: 60  KERKYTGLTKQKIIKHLLRLVSEKKSSVSEVLKNLEPQ-SPSGGHKITKRQRKSEHVAQL 118

Query: 132 PVPVTDAAMNNSGSDLVNAIYCKNSACRATLRKEDVFCKRCSCCICRKYDDNKDPSLWLT 191
            VP TD   ++S +DLV+   CKN ACRATL   D FC+RCSCCICR+YDDNKDPSLW++
Sbjct: 119 SVPATDFPTSSSHNDLVSTACCKNLACRATLNPGDAFCRRCSCCICRQYDDNKDPSLWIS 178

Query: 192 CSSEPPFGGDSCGMSCHLECALKNERSGIGKDRCYSGLDGSFYCISCRKVNDLLGCWKKQ 251
           CS+EPPF GDSC MSCHLECALK+ RSGI K     G+DGSFYC+SC K+NDLLGC +KQ
Sbjct: 179 CSAEPPFQGDSCNMSCHLECALKDVRSGILKAGRSKGIDGSFYCVSCGKLNDLLGCCRKQ 238

Query: 252 LVVAKNTRRVDILCYRLSLGQKLVNATEKYKNLSKIVDDAVKMLEDEVGPLTGLPVKMGR 311
           L+ AK+TRRVDILCYR+SL QKL++ TEKYK L +IVD++V+ LE+EVGP+ G+PVKMGR
Sbjct: 239 LIHAKDTRRVDILCYRVSLSQKLLHGTEKYKVLYQIVDESVRKLEEEVGPIAGVPVKMGR 298

Query: 312 GIVNRLSSGPEVQKLCACAVESLDKMISNTIL---PNPSVQGSNVIVPNMVKFEDVRATS 368
           GIVNRLSSGPEVQKLCA A+E LD M+S+  L   PNP VQ +N +  NM++FEDV++TS
Sbjct: 299 GIVNRLSSGPEVQKLCASAIELLDSMVSSQSLHLSPNPDVQDANFVPANMIRFEDVKSTS 358

Query: 369 LTVVLGSEDPSPGNIISYTLWHRRAHEG-FPARPTCTLFAPNTRFVVTGLCPATEYQFKV 427
           LT+VL  E+ S  N I +TLWHR+A +  +PA PTC L  P  R +V GL PAT+Y FK+
Sbjct: 359 LTLVLSYENGSSENQIGFTLWHRKADDADYPAEPTCILRQPKARCLVMGLSPATKYHFKI 418

Query: 428 VSSNGTTELGRCEIWFSTGSSRDEVTNCSVIERSQSPATNCSSLSNPSSVEDETNNVTPD 487
           V   GT EL   E+ FST    +E   C  IERSQS ATNCS LSNPSSVEDET ++ P 
Sbjct: 419 VQFEGTRELREFEVQFSTIGEVEENPGCLEIERSQSHATNCSDLSNPSSVEDETTDILPY 478

Query: 488 RDPNDAQVNNYYTYSKETDKIASTNLCDDAIDCTVLGRGTTPADAVSLLDEERANNIDGS 547
            D  +    N   YSK  + ++S  L  DA + +  G    PA  VS L+E  A  + G 
Sbjct: 479 GDRTNNLGKNSPAYSKGIEILSSAILSTDAFNLSDNGEEGMPAGTVSALNEATAAGMVGL 538

Query: 548 MPDSHVQKLESKHPPEGRIIEEMSTDNGVDTPVPTGMECVPYMRSLEAGLPITPCKIEIL 607
           +P+S   KLE++H P      +++TDN + T V +GM+   ++   + GLPITPCK+E+L
Sbjct: 539 IPNSAGSKLENRHGPAA---PKLNTDNQLSTLVRSGMDGQQFVSCSQDGLPITPCKLEVL 595

Query: 608 KDAQARNGRSKLNSKDMENGTGNRDEPQDGSTSKKRSSESRDEDCTANGLSDMDFEHCVK 667
           KD+  R  R K + KD EN T    EPQDG TSK R+ E +D+ C  NG+SD DFEH VK
Sbjct: 596 KDSLGRGERPKSSCKDQENRTRKGGEPQDGGTSKMRTGERQDDKCAENGVSDRDFEHYVK 655

Query: 668 VIRWLECEGHIERNFRQKFLTWYSLRATPQEVRIVKVFVDTFVEDPASLAEQLMDTFSDC 727
           VIRWLEC+G+IE+NFRQKFLTWYSLRA+ QEV+IVKVFVDTF+EDPASLAEQL+DTFS+C
Sbjct: 656 VIRWLECKGYIEKNFRQKFLTWYSLRASQQEVKIVKVFVDTFIEDPASLAEQLVDTFSEC 715

Query: 728 ISSRRSSVVPAGFCMKLWH 746
           ISS++ +  P GFCMKLWH
Sbjct: 716 ISSKKPTTTPPGFCMKLWH 734

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	746
TAIR|locus:2173004	620	VIN3 "VERNALIZATION INSENSITIV	0.434	0.522	0.495	7.2e-135
TAIR|locus:2128946	714	VEL1 "vernalization5/VIN3-like	0.780	0.815	0.432	9.4e-114
TAIR|locus:2044405	529	VEL2 "AT2G18880" [Arabidopsis	0.419	0.591	0.439	1.3e-103
TAIR|locus:2094859	602	VRN5 "AT3G24440" [Arabidopsis	0.369	0.458	0.426	1.5e-81
TAIR|locus:2044500	239	VEL3 "AT2G18870" [Arabidopsis	0.101	0.317	0.578	1.9e-18
TAIR|locus:2087403	1162	TTA2 "TITANIA 2" [Arabidopsis	0.190	0.122	0.246	1e-05
UNIPROTKB|Q84N38	549	PVIP "OBERON-like protein" [Ni	0.121	0.165	0.294	0.00011

TAIR|locus:2173004 VIN3 "VERNALIZATION INSENSITIVE 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 809 (289.8 bits), Expect = 7.2e-135, Sum P(3) = 7.2e-135
 Identities = 175/353 (49%), Positives = 227/353 (64%)

Query:   151 IYCKNSACRATLRKEDVFCKRCSCCICRKYDDNKDPSLWLTCSSEPPFGGDSCGMSCHLE 210
             I C+N ACRA L  +D FC+RCSCCIC+K+DDNKDPSLWLTC        D+CG SCHLE
Sbjct:   128 ICCENLACRAALGCDDTFCRRCSCCICQKFDDNKDPSLWLTC--------DACGSSCHLE 179

Query:   211 CALKNERSGIGKDRCYSGLDGSFYCISCRKVNDLLGCWKKQLVVAKNTRRVDILCYRLSL 270
             C LK +R GIG D     LDG FYC  C K NDLLGCW+KQ+ VAK TRRVD+LCYRLSL
Sbjct:   180 CGLKQDRYGIGSD----DLDGRFYCAYCGKDNDLLGCWRKQVKVAKETRRVDVLCYRLSL 235

Query:   271 GQKLVNATEKYKNLSKIVDDAVKMLEDEVGPLTGLPVKMGRGIVNRLSSGPEVQKLCACA 330
             GQKL+  T KY+NL +++D+AVK LE +VGPL+G  +KM RGIVNRLSSG  VQKLC+ A
Sbjct:   236 GQKLLRGTTKYRNLLELMDEAVKKLEGDVGPLSGWAMKMARGIVNRLSSGVHVQKLCSQA 295

Query:   331 VESLDKMISNTILPNPSVQGSNVIVPNMVKFEDVRATSLTVVLGSEDPSPGN---IISYT 387
             +E+LDK++S    P+ SV G    +   V+ E+++A S+TV + SE+PS      I  + 
Sbjct:   296 MEALDKVVS----PSESVSGQGDKMT--VRVEEIQARSVTVRVDSEEPSSSTQNKITGFR 349

Query:   388 LWHRRAH-EGFPARPTCTLFAPNTRFVVTGLCPATEYQFKVVSSNGTTELGRCEIWFSTG 446
             L+ R++  E   ++  C ++ P T   + GL P TE+  +VVS N   +L   E+ F+T 
Sbjct:   350 LFCRKSKDEECSSQGNCVVYLPETTSAIQGLEPDTEFCLRVVSFNEEGDLDESELRFTT- 408

Query:   447 SSRDEVTNCSVIERSQSPATNCSS--LSNPSSVEDETNNVTPDRDPNDAQVNN 497
               +D+          QSP TN SS   SNPS  EDE+NNV       +   +N
Sbjct:   409 -LKDDGDEAG---DQQSPLTNSSSGLCSNPSLPEDESNNVNKSCSKGNGDKDN 457

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0009409 "response to cold" evidence=IEP

GO:0010048 "vernalization response" evidence=IEP

GO:0001666 "response to hypoxia" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2128946 VEL1 "vernalization5/VIN3-like 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1122 (400.0 bits), Expect = 9.4e-114, P = 9.4e-114
 Identities = 281/650 (43%), Positives = 372/650 (57%)

Query:    20 GVALDPSKCSKLSMEEKRELVYQLSKQSHSASETLRSWTRQEILQILCAELGKERKYTGL 79
             G A D SKCS++S++EKR+LVY+LSKQSH A+E L++W+RQEILQILCAE+GKERKYTGL
Sbjct:     7 GAAGDSSKCSEMSVDEKRQLVYELSKQSHLAAEVLQAWSRQEILQILCAEMGKERKYTGL 66

Query:    80 TKLKIIENLLKLVSEKKSGEREAKTDIEXXXXXXXXXXXXXXXXXNDNPARLPVPVTDAA 139
             TK+KIIE LLK+VSEK SGE E K   +                  DNP+R  +P T+  
Sbjct:    67 TKVKIIETLLKIVSEKNSGECEGK---KRDSDCLPIQRNTKRQRKVDNPSRYVIPATNIV 123

Query:   140 MNN--SGS-DLVNA------IYCKNSACRATLRKEDVFCKRCSCCICRKYDDNKDPSLWL 190
              +N  SGS   VN       IYCKN ACRA LR+ED FC+RCSCCICRKYDDNKDPSLWL
Sbjct:   124 TSNNASGSCSSVNTKGESTTIYCKNLACRAVLRQEDSFCRRCSCCICRKYDDNKDPSLWL 183

Query:   191 TCSSEPPFGGDSCGMSCHLECALKNERSGIGKDRCYSGLDGSFYCISCRKVNDLLGCWKK 250
             TCSS+PPF G+SCG SCHLECA   E+SG+GKD+   G    FYC+SC K N LL CWKK
Sbjct:   184 TCSSDPPFEGESCGFSCHLECAFNTEKSGLGKDKQSEGC--CFYCVSCGKANSLLECWKK 241

Query:   251 QLVVAKNTRRVDILCYRLSLGQKLVNATEKYKNLSKIVDDAVKMLEDEVGPLTGLPVKMG 310
             QL +AK TRRV++LCYRL L QKL+ ++ KY+NL ++VD+AVK LE +VGPLTGLP+KMG
Sbjct:   242 QLTIAKETRRVEVLCYRLFLVQKLLKSSTKYRNLCEVVDEAVKTLEADVGPLTGLPMKMG 301

Query:   311 RGIVNRLSSGPEVQKLCACAVESLDKMISN----TILPNPSV----QGSNVIVPNMVKFE 362
             RGIVNRL SGP+VQKLC+ A+ESL+ + +       LP+P      Q  + ++ N +  +
Sbjct:   302 RGIVNRLHSGPDVQKLCSSALESLETIATTPPDVAALPSPRSSKMQQDCSYVLSNEISAD 361

Query:   363 DVRATSLTVVLGSEDPSPGNIISYTLWHRRAHEGFPARPTCTLFA------PNTRFVVTG 416
                AT+ +  +  ED    N  S T+    A    P+ P    ++      P   +    
Sbjct:   362 T--ATTGSTKIRFEDV---NATSLTVV--LASNEIPSPPNIVHYSIWHRKVPEKDYPEKS 414

Query:   417 LCPATEYQFKVVSSNGTTELGRC-EIWFSTGSSRDEVTNCSVIERSQSPATNCSSLSNPS 475
              C       + V S        C ++   +G+    V   +V+ RS     NCSS     
Sbjct:   415 TCTLFIPNTRFVVSGLAPASEYCFKVVSYSGTREMGVDEINVLTRSAEEGANCSSAVE-R 473

Query:   476 SVEDETNNVTPDRDPN--DAQVNNYYTYSKE-TDKIASTNLCDDAIDCTVLGR--GTTPA 530
             SV   TN  T   +P+  +A+ NN Y   K+ + K    N    ++D +   R   TT +
Sbjct:   474 SVSPLTNCSTLSSNPSSVEAESNNDYIVPKKPSSKNEDNN--SPSVDESAAKRMKRTTDS 531

Query:   531 DAVSL-LDEERANNIDGSMPDSHVQKLESKHPPEGRIIEEMSTDNGVDTPVPTGMECVPY 589
             D V +  D E+   +D    ++ + K ES+ P                  V T    V  
Sbjct:   532 DIVQIEKDVEQIVLLDDEEQEAVLDKTESETPV-----------------VVTTKSLVGN 574

Query:   590 MRSLEAGLPITPCKIEILKDAQARNGRSKLNSKDMENGTGNRDEPQDGST 639
               S +A LPITP + + +K+ QAR    +++ KD  N   N D   +G T
Sbjct:   575 RNSSDASLPITPFRSDEIKNRQAR---IEISMKDNCN---NGDHSANGGT 618

GO:0005634 "nucleus" evidence=ISM

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA;IPI

GO:0031519 "PcG protein complex" evidence=IDA

GO:0035064 "methylated histone residue binding" evidence=IDA

GO:0048587 "regulation of short-day photoperiodism, flowering" evidence=IMP

GO:0009506 "plasmodesma" evidence=IDA

GO:0007155 "cell adhesion" evidence=RCA

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA

GO:0010090 "trichome morphogenesis" evidence=RCA

GO:0016926 "protein desumoylation" evidence=RCA

GO:0045010 "actin nucleation" evidence=RCA

GO:0048765 "root hair cell differentiation" evidence=RCA

GO:0050665 "hydrogen peroxide biosynthetic process" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

TAIR|locus:2044405 VEL2 "AT2G18880" [Arabidopsis thaliana (taxid:3702)]

 Score = 664 (238.8 bits), Expect = 1.3e-103, Sum P(3) = 1.3e-103
 Identities = 146/332 (43%), Positives = 204/332 (61%)

Query:   151 IYCKNSACRATLRKEDVFCKRCSCCICRKYDDNKDPSLWLTCSSEPPFGGDSCGMSCHLE 210
             +YC+N AC+  LR+E  FCKRCSCCIC KYDDNKDPSLWLTC+S+  F G+SCG+SCHL 
Sbjct:   117 MYCQNLACQNKLREEATFCKRCSCCICFKYDDNKDPSLWLTCNSDSQFDGESCGLSCHLN 176

Query:   211 CALKNERSGIGKDRCYSGLDGSFYCISCRKVNDLLGCWKKQLVVAKNTRRVDILCYRLSL 270
             CA  +E+SG+ +D   S +DG F C+SC K N  + C KKQL++A   RRV + CYR+ L
Sbjct:   177 CAFDSEKSGLKEDTPSSDIDGCFNCVSCGKTNSKIECLKKQLIIANEERRVGVFCYRILL 236

Query:   271 GQKLVNATEKYKNLSKIVDDAVKMLEDEVG-PLTGLPVKMGRGIVNRLSSGPEVQKLCAC 329
               KL+  T+KY  +S+ V+ AV  L++E G P++ LP KM RG+VNRL    +V+K C+ 
Sbjct:   237 AHKLLKGTKKYIIVSEEVEKAVMHLKNEFGVPISCLPSKMSRGLVNRLCCAEKVKKHCSS 296

Query:   330 AVESLDKMISNTILPNPS-VQGSNVIVPNMVKFEDVRATSLTVVLGSEDP-SPGNIISYT 387
             A++ LD       LP PS +QGS  I     + E V ATS+T  + +E+  S G+   Y 
Sbjct:   297 ALKELDG------LPLPSTIQGSMKI-----RIESVLATSVTFDIEAEESFSWGDTNHYR 345

Query:   388 LWHRRAHEGFPARP-TCTLFAPNT--RFVVTGLCPATEYQFKVVSSNGTTELGRCEIWFS 444
             + +R+  E   ++  T  LF+ ++  RF V  L PATEY FK+VS +G  EL   E   S
Sbjct:   346 MVYRKVSEKHSSKDLTRELFSTSSHQRFTVMELTPATEYWFKIVSFSGVEELSVDEFIVS 405

Query:   445 TGSSRDEVTNCSVIERSQSPATNCSSLSNPSS 476
             T + +DE    + +  + S   N + +    S
Sbjct:   406 TKTLQDE--EVAAVLLNMSNCNNANKMEKSGS 435

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2094859 VRN5 "AT3G24440" [Arabidopsis thaliana (taxid:3702)]

 Score = 578 (208.5 bits), Expect = 1.5e-81, Sum P(2) = 1.5e-81
 Identities = 127/298 (42%), Positives = 172/298 (57%)

Query:   140 MNNSGSDLVNAIYCKNSACRATLRKEDVFCKRCSCCICRKYDDNKDPSLWLTCSSEPPFG 199
             ++  G  L ++  CKN++CRA + KED FCKRCSCC+C  +D+NKDPSLWL C  E    
Sbjct:    36 VDGGGGCLRSSWICKNASCRANVPKEDSFCKRCSCCVCHNFDENKDPSLWLVCEPEKSDD 95

Query:   200 GDSCGMSCHLECALKNERSGIGKDRCYSGLDGSFYCISCRKVNDLLGCWKKQLVVAKNTR 259
              + CG+SCH+ECA +  + G+        LDG F C SC KV+ +LGCWKKQLV AK  R
Sbjct:    96 VEFCGLSCHIECAFREVKVGVIALGNLMKLDGCFCCYSCGKVSQILGCWKKQLVAAKEAR 155

Query:   260 RVDILCYRLSLGQKLVNATEKYKNLSKIVDDAVKMLEDEVGPLTGLPVKMGRGIVNRLSS 319
             R D LCYR+ LG +L+N T ++  L +IV  A  MLEDEVGPL G   +  RGIV+RL  
Sbjct:   156 RRDGLCYRIDLGYRLLNGTSRFSELHEIVRAAKSMLEDEVGPLDGPTARTDRGIVSRLPV 215

Query:   320 GPEVQKLCACAVESLDKMISNTILPNPSVQGSNVIVPNMVKF--EDVRATSLTVVLGSED 377
                VQ+LC  A++   ++ +N         G + +VP   +F  ED+    +T+ L  E 
Sbjct:   216 AANVQELCTSAIKKAGELSANA--------GRD-LVPAACRFHFEDIAPKQVTLRL-IEL 265

Query:   378 PSPG--NIISYTLWHRRAHEGFPARPTCTLFAP----NTRFVVTGLCPATEYQFKVVS 429
             PS    ++  Y LW+ +  E     P   LF        R V++ L P TEY F+VVS
Sbjct:   266 PSAVEYDVKGYKLWYFKKGE----MPEDDLFVDCSRTERRMVISDLEPCTEYTFRVVS 319

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0009909 "regulation of flower development" evidence=IGI;RCA

GO:0010048 "vernalization response" evidence=IMP

GO:0016568 "chromatin modification" evidence=IMP

GO:0016571 "histone methylation" evidence=RCA;IMP

GO:0006306 "DNA methylation" evidence=RCA

GO:0006342 "chromatin silencing" evidence=RCA

GO:0009640 "photomorphogenesis" evidence=RCA

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA

GO:0009845 "seed germination" evidence=RCA

GO:0009933 "meristem structural organization" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

GO:0010182 "sugar mediated signaling pathway" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0010388 "cullin deneddylation" evidence=RCA

GO:0016567 "protein ubiquitination" evidence=RCA

GO:0016572 "histone phosphorylation" evidence=RCA

GO:0016579 "protein deubiquitination" evidence=RCA

GO:0019915 "lipid storage" evidence=RCA

GO:0031047 "gene silencing by RNA" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

GO:0050826 "response to freezing" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

TAIR|locus:2044500 VEL3 "AT2G18870" [Arabidopsis thaliana (taxid:3702)]

 Score = 233 (87.1 bits), Expect = 1.9e-18, P = 1.9e-18
 Identities = 44/76 (57%), Positives = 56/76 (73%)

Query:   660 MDFEHCVKVIRWLECEGHIERNFRQKFLTWYSLRATPQEVRIVKVFVDTFVEDPASLAEQ 719
             +  E CVK+IR LEC G++E  FRQKFLTW+SLRAT QE   V  F++ F +D  +LAEQ
Sbjct:   142 LGLEQCVKIIRKLECSGYVESTFRQKFLTWFSLRATSQERNTVTTFMNAFNDDSMALAEQ 201

Query:   720 LMDTFSDCISSRRSSV 735
             L+DTFSDCI S+ S +
Sbjct:   202 LVDTFSDCIWSKGSVI 217

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2087403 TTA2 "TITANIA 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 142 (55.0 bits), Expect = 1.0e-05, P = 1.0e-05
 Identities = 39/158 (24%), Positives = 67/158 (42%)

Query:   158 CRATLRKEDVFCKRCSCCICRKYDDNKDPSLWLTCSSEPPFGGDSCGMSCHLECALKNE- 216
             CR   RK D FC  C C +C  +D   +   W+ C        D C   CH +C +K   
Sbjct:   823 CRVCSRK-DGFCSACMCLVCSNFDMASNTCSWVGC--------DVCLHWCHTDCGIKESY 873

Query:   217 -RSGIGKDRCYSGLDGSFYCISCRKVNDLLGCWKKQLVVAKNTRRVDILCYRLSLGQKLV 275
              R+GI         +  F+C++C   +++ G  K+  +      + +  C  L    K+ 
Sbjct:   874 IRNGINASGAPGMTEMQFHCVACNHPSEMFGFVKEVFLNFAREWKFERFCKELEYVNKIF 933

Query:   276 NATE--KYKNLSKIVDDAVKMLEDEVGPLTGLPVKMGR 311
             ++++  + K L +  D  +  L+ +   L GLP    R
Sbjct:   934 SSSKDSRGKQLRQAADAMLASLKSK---LIGLPEACNR 968

GO:0005634 "nucleus" evidence=ISM

GO:0005515 "protein binding" evidence=IPI

GO:0001708 "cell fate specification" evidence=IGI

GO:0009880 "embryonic pattern specification" evidence=IGI

GO:0090421 "embryonic meristem initiation" evidence=IGI

UNIPROTKB|Q84N38 PVIP "OBERON-like protein" [Nicotiana benthamiana (taxid:4100)]

 Score = 122 (48.0 bits), Expect = 0.00011, Sum P(2) = 0.00011
 Identities = 33/112 (29%), Positives = 48/112 (42%)

Query:   153 CKNSACRATLRKEDV----------FCKRCSCCICRKYDDNKDPSLWLTCSSEPPFGGDS 202
             C+N AC + L  E+           FC  C C IC K+D   +   W+ C        D 
Sbjct:   196 CRNIACGSMLPAEECSCEICAKKNGFCNLCMCVICYKFDFEVNSCRWIGC--------DL 247

Query:   203 CGMSCHLECALKNERSGIGKD--RCYSGLDGSFYCISCRKVNDLLGCWKKQL 252
             C    H +CA+ N + G G       S  +  F C +C + ++LLG W K +
Sbjct:   248 CSHWTHTDCAISNGQIGTGPSVKNGASSAETLFRCHACSRTSELLG-WVKDV 298

GO:0046740 "spread of virus in host, cell to cell" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.121.55.1 hypothetical protein (679 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	746
pfam07227	446	pfam07227, DUF1423, Protein of unknown function (D	3e-07
cd00063	93	cd00063, FN3, Fibronectin type 3 domain; One of th	5e-06
smart00060	83	smart00060, FN3, Fibronectin type 3 domain	2e-04
pfam00041	84	pfam00041, fn3, Fibronectin type III domain	2e-04

>gnl|CDD|219342 pfam07227, DUF1423, Protein of unknown function (DUF1423)

 Score = 53.2 bits (128), Expect = 3e-07
 Identities = 38/160 (23%), Positives = 68/160 (42%), Gaps = 26/160 (16%)

Query: 153 CKNSACRATLRKEDV----------FCKRCSCCICRKYDDNKDPSLWLTCSSEPPFGGDS 202
           C+N AC++ L  +D           FC  C C +C K+D   +   W+ C        D 
Sbjct: 100 CRNIACQSLLPVDDCDCKICSNKKGFCSLCMCVVCSKFDFAVNTCRWVGC--------DV 151

Query: 203 CGMSCHLECALKNE--RSGIGKDRCYSGLDGSFYCISCRKVNDLLGCWKKQLVV--AKNT 258
           C   CH +CA+++   R G          +  F+C +C   +++ G + K +    A N 
Sbjct: 152 CSHWCHTDCAIRDGLIRPGPSLKGGSGTTEMQFHCRACNHTSEMFG-FVKDVFQHCAPNW 210

Query: 259 RRVDILCYRLSLGQKLVNATE--KYKNLSKIVDDAVKMLE 296
            R + L   L   +K+   +E  + K L    ++ ++ L+
Sbjct: 211 DR-ETLIKELDFVRKIFRGSEDARGKKLFWKCEELIEKLK 249

This family represents a conserved region approximately 500 residues long within a number of Arabidopsis thaliana proteins of unknown function. Length = 446

>gnl|CDD|238020 cd00063, FN3, Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin

 Score = 45.2 bits (107), Expect = 5e-06
 Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 1/77 (1%)

Query: 356 PNMVKFEDVRATSLTVVLGSEDPSPGNIISYTLWHRRAHEGFPARPTCTLFAPNTRFVVT 415
           P  ++  DV +TS+T+     +   G I  Y + +R    G             T + +T
Sbjct: 4   PTNLRVTDVTSTSVTLSWTPPEDDGGPITGYVVEYREKGSGDWKEVE-VTPGSETSYTLT 62

Query: 416 GLCPATEYQFKVVSSNG 432
           GL P TEY+F+V + NG
Sbjct: 63  GLKPGTEYEFRVRAVNG 79

Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases. Length = 93

>gnl|CDD|214495 smart00060, FN3, Fibronectin type 3 domain

 Score = 40.7 bits (95), Expect = 2e-04
 Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 5/79 (6%)

Query: 356 PNMVKFEDVRATSLTVVLGS-EDPSPGNIISYTL-WHRRAHEGFPARPTCTLFAPNTRFV 413
           P+ ++  DV +TS+T+   S E P    I  Y + +     E         +   +T + 
Sbjct: 4   PSNLRVTDVTSTSVTL---SWEPPPDDGITGYIVGYRVEYREEGSEWKEVNVTPSSTSYT 60

Query: 414 VTGLCPATEYQFKVVSSNG 432
           +TGL P TEY+F+V + NG
Sbjct: 61  LTGLKPGTEYEFRVRAVNG 79

One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins. Length = 83

>gnl|CDD|200951 pfam00041, fn3, Fibronectin type III domain

 Score = 40.5 bits (95), Expect = 2e-04
 Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 6/79 (7%)

Query: 359 VKFEDVRATSLTVVLGSEDPSPGN--IISYTLWHRRAHEGFPARPTCTLFAPNTRFVVTG 416
           +   DV +TSLT+   S  P PGN  I  Y + +R  + G   +   T+    T + +TG
Sbjct: 6   LTVTDVTSTSLTL---SWSPPPGNGPITGYEVEYRPVNGGEEWK-EITVPGTTTSYTLTG 61

Query: 417 LCPATEYQFKVVSSNGTTE 435
           L P TEY+ +V + NG  E
Sbjct: 62  LKPGTEYEVRVQAVNGAGE 80

Length = 84

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	746
PF07227	446	DUF1423: Protein of unknown function (DUF1423); In	100.0
PF00041	85	fn3: Fibronectin type III domain; InterPro: IPR003	98.56
cd00063	93	FN3 Fibronectin type 3 domain; One of three types	97.96
smart00060	83	FN3 Fibronectin type 3 domain. One of three types	97.04
KOG4221	1381	consensus Receptor mediating netrin-dependent axon	95.61
PF09294	106	Interfer-bind: Interferon-alpha/beta receptor, fib	95.49
KOG4221	1381	consensus Receptor mediating netrin-dependent axon	94.17
KOG3513	1051	consensus Neural cell adhesion molecule L1 [Signal	94.1
smart00249	47	PHD PHD zinc finger. The plant homeodomain (PHD) f	93.76
KOG0196	996	consensus Tyrosine kinase, EPH (ephrin) receptor f	93.11
KOG3513	1051	consensus Neural cell adhesion molecule L1 [Signal	84.9
PF00628	51	PHD: PHD-finger; InterPro: IPR019787 Zinc finger (	84.22
PF07498	43	Rho_N: Rho termination factor, N-terminal domain;	82.53

>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []

Probab=100.00  E-value=1.6e-52  Score=451.75  Aligned_cols=152  Identities=39%  Similarity=0.770  Sum_probs=143.1

Q ss_pred             CCCCCccccccCccccccccCCc----------CCcCCceeeeeccccCCCCCccEEecCCCCCCCCCcccchhhhhhhh
Q 004540          144 GSDLVNAIYCKNSACRATLRKED----------VFCKRCSCCICRKYDDNKDPSLWLTCSSEPPFGGDSCGMSCHLECAL  213 (746)
Q Consensus       144 ~~~~~~~~~C~N~aCra~L~~ed----------~FCr~CsC~IC~kfD~nkdp~~Wl~C~s~~~~~~~~CghscHleCAL  213 (746)
                      =.++|.+.+|||+||||+||++|          |||++||||||+|||+|+|||+||+||        +||||||+||||
T Consensus        91 LveiFl~~rCrN~aC~s~LP~ddc~C~iC~~~~gFC~~C~C~iC~kfD~~~n~~~Wi~Cd--------~CgH~cH~dCAL  162 (446)
T PF07227_consen   91 LVEIFLYKRCRNLACRSQLPVDDCDCKICCSEPGFCRRCMCCICSKFDDNKNTCSWIGCD--------VCGHWCHLDCAL  162 (446)
T ss_pred             HHHHHHHHhcCCHHhhccCCccccCcchhcCCCCccccCCccccCCcccCCCCeeEEecc--------CCCceehhhhhc
Confidence            35689999999999999999976          999999999999999999999999998        999999999999


Q ss_pred             hccccccccC--CCccccceeEEeccCCCccchhHHHHHHHHHhhccccchhhhhhhhchhhhccccHH--HHHHHHHHH
Q 004540          214 KNERSGIGKD--RCYSGLDGSFYCISCRKVNDLLGCWKKQLVVAKNTRRVDILCYRLSLGQKLVNATEK--YKNLSKIVD  289 (746)
Q Consensus       214 r~~~~G~~~~--g~~~~lD~~f~C~~Cgk~sdLlg~w~Kql~~ake~rrvD~Lc~rL~l~~kll~GS~r--~k~L~~~ve  289 (746)
                      |+++||+|.+  |+.+++||+|||++|||+|||||||+++|.+|+++||+|+||+||++++|||+||++  ||+||++++
T Consensus       163 r~~~i~~G~s~~g~~g~~d~~f~C~~C~~~seLlG~vk~vf~~ca~~~~~d~L~~eL~l~~rIf~GSed~rgk~L~~~~e  242 (446)
T PF07227_consen  163 RHELIGTGPSVKGSIGTLDMQFHCRACGKTSELLGFVKKVFQTCAKAWRVDVLCKELDLVRRIFRGSEDYRGKELHEKVE  242 (446)
T ss_pred             ccccccCCccCCCCCccCceEEEccCCCChhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhCccchhHHHHHHHHH
Confidence            9999977654  666889999999999999999999999999999999999999999999999999994  799999999


Q ss_pred             HHHHHhhhccCCCC
Q 004540          290 DAVKMLEDEVGPLT  303 (746)
Q Consensus       290 ~Al~KLe~evgpl~  303 (746)
                      +|++|||++++++.
T Consensus       243 ~al~KL~~~~~~~~  256 (446)
T PF07227_consen  243 EALAKLENGVIDSS  256 (446)
T ss_pred             HHHHHHhCCCCCHH
Confidence            99999999997663

Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.

>PF00041 fn3: Fibronectin type III domain; InterPro: IPR003961 Fibronectins are multi-domain glycoproteins found in a soluble form in plasma, and in an insoluble form in loose connective tissue and basement membranes []

Probab=98.56  E-value=3.5e-07  Score=75.35  Aligned_cols=82  Identities=26%  Similarity=0.403  Sum_probs=67.9

Q ss_pred             cCceEEEEEeeceeEEEEeCcCCCCCCCcceEEEEeeecCCCCCCCCceeeecCCceeEeecCCcceeeeEEEEeccCCc
Q 004540          355 VPNMVKFEDVRATSLTVVLGSEDPSPGNIISYTLWHRRAHEGFPARPTCTLFAPNTRFVVTGLCPATEYQFKVVSSNGTT  434 (746)
Q Consensus       355 ~~~~~rFEevt~tSv~vvL~~~~~s~~~i~Gy~LWhrks~~~y~~ePt~~~~~p~~r~~vs~L~P~TEY~fkvvsF~~~~  434 (746)
                      ++..+++.+++++||+|-+.........+.||.|.++..... .......+....+.++|.||.|.|+|.|||.+++..|
T Consensus         2 ~P~~l~v~~~~~~sv~v~W~~~~~~~~~~~~y~v~~~~~~~~-~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~v~a~~~~g   80 (85)
T PF00041_consen    2 APENLSVSNISPTSVTVSWKPPSSGNGPITGYRVEYRSVNST-SDWQEVTVPGNETSYTITGLQPGTTYEFRVRAVNSDG   80 (85)
T ss_dssp             SSEEEEEEEECSSEEEEEEEESSSTSSSESEEEEEEEETTSS-SEEEEEEEETTSSEEEEESCCTTSEEEEEEEEEETTE
T ss_pred             cCcCeEEEECCCCEEEEEEECCCCCCCCeeEEEEEEEecccc-eeeeeeeeeeeeeeeeeccCCCCCEEEEEEEEEeCCc
Confidence            456799999999999999998875678899999999887664 1233445677777999999999999999999999888


Q ss_pred             cCcc
Q 004540          435 ELGR  438 (746)
Q Consensus       435 elg~  438 (746)
                       .|.
T Consensus        81 -~g~   83 (85)
T PF00041_consen   81 -EGP   83 (85)
T ss_dssp             -EEE
T ss_pred             -CcC
Confidence             444

They contain multiple copies of 3 repeat regions (types I, II and III), which bind to a variety of substances including heparin, collagen, DNA, actin, fibrin and fibronectin receptors on cell surfaces. The wide variety of these substances means that fibronectins are involved in a number of important functions: e.g., wound healing; cell adhesion; blood coagulation; cell differentiation and migration; maintenance of the cellular cytoskeleton; and tumour metastasis []. The role of fibronectin in cell differentiation is demonstrated by the marked reduction in the expression of its gene when neoplastic transformation occurs. Cell attachment has been found to be mediated by the binding of the tetrapeptide RGDS to integrins on the cell surface [], although related sequences can also display cell adhesion activity. Plasma fibronectin occurs as a dimer of 2 different subunits, linked together by 2 disulphide bonds near the C terminus. The difference in the 2 chains occurs in the type III repeat region and is caused by alternative splicing of the mRNA from one gene []. The observation that, in a given protein, an individual repeat of one of the 3 types (e.g., the first FnIII repeat) shows much less similarity to its subsequent tandem repeats within that protein than to its equivalent repeat between fibronectins from other species, has suggested that the repeating structure of fibronectin arose at an early stage of evolution. It also seems to suggest that the structure is subject to high selective pressure []. The fibronectin type III repeat region is an approximately 100 amino acid domain, different tandem repeats of which contain binding sites for DNA, heparin and the cell surface []. The superfamily of sequences believed to contain FnIII repeats represents 45 different families, the majority of which are involved in cell surface binding in some manner, or are receptor protein tyrosine kinases, or cytokine receptors.; GO: 0005515 protein binding; PDB: 1UEM_A 1TDQ_A 1X5I_A 2IC2_B 2IBG_C 2IBB_A 3R8Q_A 2FNB_A 1FNH_A 2EDB_A ....

>cd00063 FN3 Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin

Probab=97.96  E-value=8.4e-05  Score=59.29  Aligned_cols=72  Identities=31%  Similarity=0.465  Sum_probs=57.0

Q ss_pred             EEEEEeeceeEEEEeCcCCCCCCCcceEEEEeeecCCCCCCCCceeee---cCCceeEeecCCcceeeeEEEEeccCCc
Q 004540          359 VKFEDVRATSLTVVLGSEDPSPGNIISYTLWHRRAHEGFPARPTCTLF---APNTRFVVTGLCPATEYQFKVVSSNGTT  434 (746)
Q Consensus       359 ~rFEevt~tSv~vvL~~~~~s~~~i~Gy~LWhrks~~~y~~ePt~~~~---~p~~r~~vs~L~P~TEY~fkvvsF~~~~  434 (746)
                      |++....+.++.|.+.........+.+|.|++++..+.    ....+.   ....++.|.+|.|.|.|.|+|.++...+
T Consensus         7 ~~~~~~~~~~~~v~W~~~~~~~~~~~~y~v~~~~~~~~----~~~~~~~~~~~~~~~~i~~l~p~~~Y~~~v~a~~~~~   81 (93)
T cd00063           7 LRVTDVTSTSVTLSWTPPEDDGGPITGYVVEYREKGSG----DWKEVEVTPGSETSYTLTGLKPGTEYEFRVRAVNGGG   81 (93)
T ss_pred             cEEEEecCCEEEEEECCCCCCCCcceeEEEEEeeCCCC----CCEEeeccCCcccEEEEccccCCCEEEEEEEEECCCc
Confidence            67888889999999988875446789999999987521    121222   3778999999999999999999998744

Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.

>smart00060 FN3 Fibronectin type 3 domain

Probab=97.04  E-value=0.0063  Score=46.90  Aligned_cols=74  Identities=28%  Similarity=0.385  Sum_probs=52.3

Q ss_pred             EEEEEeeceeEEEEeCcCCCCCCCcceEEEEeeecCCCCCCCCceeeecC-CceeEeecCCcceeeeEEEEeccCCc
Q 004540          359 VKFEDVRATSLTVVLGSEDPSPGNIISYTLWHRRAHEGFPARPTCTLFAP-NTRFVVTGLCPATEYQFKVVSSNGTT  434 (746)
Q Consensus       359 ~rFEevt~tSv~vvL~~~~~s~~~i~Gy~LWhrks~~~y~~ePt~~~~~p-~~r~~vs~L~P~TEY~fkvvsF~~~~  434 (746)
                      +..+.+.+.++.|-.+..... .. .+|.+++.........+-..+...+ +.++.|.+|.|.|-|.|+|.+++..|
T Consensus         7 ~~~~~~~~~~~~v~W~~~~~~-~~-~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~Y~v~v~a~~~~g   81 (83)
T smart00060        7 LRVTDVTSTSVTLSWEPPPDD-GI-TGYIVGYRVEYREEGSSWKEVNVTPSSTSYTLTGLKPGTEYEFRVRAVNGAG   81 (83)
T ss_pred             EEEEEEeCCEEEEEECCCCCC-CC-CccEEEEEEEEecCCCccEEEEecCCccEEEEeCcCCCCEEEEEEEEEcccC
Confidence            778888888999888733222 22 8999998877554211222222223 58999999999999999999988643

One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.

>KOG4221 consensus Receptor mediating netrin-dependent axon guidance [Signal transduction mechanisms]

Probab=95.61  E-value=0.02  Score=70.62  Aligned_cols=76  Identities=21%  Similarity=0.305  Sum_probs=60.9

Q ss_pred             ceEEEEEeeceeEEEEeCcCCC--CCCCcceEEEEeeecCCC-CCCCCceeeec-CCceeEeecCCcceeeeEEEEeccC
Q 004540          357 NMVKFEDVRATSLTVVLGSEDP--SPGNIISYTLWHRRAHEG-FPARPTCTLFA-PNTRFVVTGLCPATEYQFKVVSSNG  432 (746)
Q Consensus       357 ~~~rFEevt~tSv~vvL~~~~~--s~~~i~Gy~LWhrks~~~-y~~ePt~~~~~-p~~r~~vs~L~P~TEY~fkvvsF~~  432 (746)
                      .-++.|-+.++||.|-+....+  .-..|+||++=||+...+ +-.   -++.. -.++.++.+|.|.|+|.|||-++|-
T Consensus       620 ~Nl~lev~sStsVrVsW~pP~~~t~ng~itgYkIRy~~~~~~~~~~---~t~v~~n~~~~l~~~Lep~T~Y~vrIsa~t~  696 (1381)
T KOG4221|consen  620 QNLSLEVVSSTSVRVSWLPPPSETQNGQITGYKIRYRKLSREDEVN---ETVVKGNTTQYLFNGLEPNTQYRVRISAMTV  696 (1381)
T ss_pred             cceEEEecCCCeEEEEccCCCcccccceEEEEEEEecccCcccccc---eeecccchhhhHhhcCCCCceEEEEEEEecc
Confidence            3489999999999999998875  467899999999966554 221   24444 6788899999999999999999987


Q ss_pred             Ccc
Q 004540          433 TTE  435 (746)
Q Consensus       433 ~~e  435 (746)
                      -|.
T Consensus       697 nGt  699 (1381)
T KOG4221|consen  697 NGT  699 (1381)
T ss_pred             CCC
Confidence            553

>PF09294 Interfer-bind: Interferon-alpha/beta receptor, fibronectin type III; InterPro: IPR015373 Members of this family adopt a secondary structure consisting of seven beta-strands arranged in an immunoglobulin-like beta-sandwich, in a Greek-key topology

Probab=95.49  E-value=0.034  Score=49.26  Aligned_cols=85  Identities=18%  Similarity=0.164  Sum_probs=56.9

Q ss_pred             CceEEEEEeeceeEEEEeCcCC---------CCCCCcce---EEEEeeecCCCCCCCCceeeecCCceeEeecCCcceee
Q 004540          356 PNMVKFEDVRATSLTVVLGSED---------PSPGNIIS---YTLWHRRAHEGFPARPTCTLFAPNTRFVVTGLCPATEY  423 (746)
Q Consensus       356 ~~~~rFEevt~tSv~vvL~~~~---------~s~~~i~G---y~LWhrks~~~y~~ePt~~~~~p~~r~~vs~L~P~TEY  423 (746)
                      +..|.+ .+...+|.|.+....         .+..++-+   |+|-||+....   .-+-.+...++.++|.+|.|.|+|
T Consensus         5 PP~v~v-~~~~~~l~V~i~~P~~~~~~~~~~~~l~~~~~~~~Y~v~~~~~~~~---~~~~~~~~~~~~~~l~~L~p~t~Y   80 (106)
T PF09294_consen    5 PPSVNV-SSCGGSLHVTIKPPMTPLRAGGKNSSLRDIYPSLSYNVSYWKNGSN---EKKKEIETKNSSVTLSDLKPGTNY   80 (106)
T ss_dssp             SSEEEE-EEETTEEEEEEEESEEEEECSSSEEEHHHHHGG-EEEEEEEETTTS---CEEEEEESSSEEEEEES--TTSEE
T ss_pred             CCEEEE-EECCCEEEEEEECCCcccccCCCCCcHHHhCCCeEEEEEEEeCCCc---cceEEEeecCCEEEEeCCCCCCCE
Confidence            345777 788888888776654         12344544   99999998764   234466778889999999999999


Q ss_pred             eEEEEeccCCc-cCc-ceeeEEe
Q 004540          424 QFKVVSSNGTT-ELG-RCEIWFS  444 (746)
Q Consensus       424 ~fkvvsF~~~~-elg-~~E~k~~  444 (746)
                      +|+|-+|.... .-| .++.+|.
T Consensus        81 Cv~V~~~~~~~~~~s~~S~~~C~  103 (106)
T PF09294_consen   81 CVSVQAFSPSQNKNSQPSEPQCI  103 (106)
T ss_dssp             EEEEEEEECSSTEEEEEBSEEEE
T ss_pred             EEEEEEEeccCCCcCCCCCCEeE
Confidence            99999844322 222 3345554

They are required for binding to interferon-alpha []. ; PDB: 1A21_A 3LQM_B 3ELA_T 1AHW_C 2A2Q_T 1TFH_B 1FAK_T 1WSS_T 1W2K_T 2FIR_T ....

>KOG4221 consensus Receptor mediating netrin-dependent axon guidance [Signal transduction mechanisms]

Probab=94.17  E-value=0.18  Score=62.60  Aligned_cols=88  Identities=22%  Similarity=0.261  Sum_probs=65.3

Q ss_pred             EEEEEeeceeEEEEeCcCCCCCCCcceEEEEeeecCCCCCCCCceeeecCCceeEeecCCcceeeeEEEEeccCCc-cCc
Q 004540          359 VKFEDVRATSLTVVLGSEDPSPGNIISYTLWHRRAHEGFPARPTCTLFAPNTRFVVTGLCPATEYQFKVVSSNGTT-ELG  437 (746)
Q Consensus       359 ~rFEevt~tSv~vvL~~~~~s~~~i~Gy~LWhrks~~~y~~ePt~~~~~p~~r~~vs~L~P~TEY~fkvvsF~~~~-elg  437 (746)
                      +.--...++++.|+.....--.+.|+||+|.|-..+..+  +  .-+-...+-..|.||.|-|||.|+||+|+..| -..
T Consensus       527 ~~a~ats~~ti~v~WepP~~~n~~I~~yk~~ys~~~~~~--~--~~~~~n~~e~ti~gL~k~TeY~~~vvA~N~~G~g~s  602 (1381)
T KOG4221|consen  527 LQAYATSPTTILVTWEPPPFGNGPITGYKLFYSEDDTGK--E--LRVENNATEYTINGLEKYTEYSIRVVAYNSAGSGVS  602 (1381)
T ss_pred             ccccccCcceEEEEecCCCCCCCCceEEEEEEEcCCCCc--e--EEEecCccEEEeecCCCccceEEEEEEecCCCCCCC
Confidence            444446677777777766545678999999998883321  1  11233466889999999999999999999988 567


Q ss_pred             ceeeEEecCcccc
Q 004540          438 RCEIWFSTGSSRD  450 (746)
Q Consensus       438 ~~E~k~~T~s~e~  450 (746)
                      ..++++.|.+..-
T Consensus       603 S~~i~V~Tlsd~P  615 (1381)
T KOG4221|consen  603 SADITVRTLSDVP  615 (1381)
T ss_pred             CCceEEEeccCCC
Confidence            8899999986543

>KOG3513 consensus Neural cell adhesion molecule L1 [Signal transduction mechanisms]

Probab=94.10  E-value=0.21  Score=61.67  Aligned_cols=88  Identities=16%  Similarity=0.226  Sum_probs=74.1

Q ss_pred             CCcccCceEEEEEeeceeEEEEeCcCCCCCCCcceEEEEeeecCCCCCCCCceeeecCCceeEeecCCcceeeeEEEEec
Q 004540          351 SNVIVPNMVKFEDVRATSLTVVLGSEDPSPGNIISYTLWHRRAHEGFPARPTCTLFAPNTRFVVTGLCPATEYQFKVVSS  430 (746)
Q Consensus       351 ~~l~~~~~~rFEevt~tSv~vvL~~~~~s~~~i~Gy~LWhrks~~~y~~ePt~~~~~p~~r~~vs~L~P~TEY~fkvvsF  430 (746)
                      -...++..+....++++.++|..+-..---+-++||.|=||+..+.|-..+...+....++..|+||.|-|-|.|.|-++
T Consensus       818 ~P~~ap~~~~~~~~s~s~~~v~W~~~~~~nG~l~gY~v~Y~~~~~~~~~~~~~~i~~~~~~~~ltgL~~~T~Y~~~vrA~  897 (1051)
T KOG3513|consen  818 EPPVAPTKLSAKPLSSSEVNLSWKPPLWDNGKLTGYEVKYWKINEKEGSLSRVQIAGNRTSWRLTGLEPNTKYRFYVRAY  897 (1051)
T ss_pred             CCCCCCccceeecccCceEEEEecCcCccCCccceeEEEEEEcCCCcccccceeecCCcceEeeeCCCCCceEEEEEEEe
Confidence            34556677888899999999998655322378999999999999988778887788888999999999999999999999


Q ss_pred             cCCccCcce
Q 004540          431 NGTTELGRC  439 (746)
Q Consensus       431 ~~~~elg~~  439 (746)
                      |..| .|..
T Consensus       898 nsaG-~Gp~  905 (1051)
T KOG3513|consen  898 TSAG-GGPA  905 (1051)
T ss_pred             cCCC-CCCC
Confidence            9999 7744

>smart00249 PHD PHD zinc finger

Probab=93.76  E-value=0.065  Score=40.10  Aligned_cols=46  Identities=33%  Similarity=0.681  Sum_probs=34.9

Q ss_pred             eeeeccccCCCCCccEEecCCCCCCCCCcccchhhhhhhhhccccccccCCCccccceeEEeccC
Q 004540          174 CCICRKYDDNKDPSLWLTCSSEPPFGGDSCGMSCHLECALKNERSGIGKDRCYSGLDGSFYCISC  238 (746)
Q Consensus       174 C~IC~kfD~nkdp~~Wl~C~s~~~~~~~~CghscHleCALr~~~~G~~~~g~~~~lD~~f~C~~C  238 (746)
                      |.+|.+.+   ++-.||.|+        .|..|-|+.|+=....        .......|+|..|
T Consensus         2 C~~C~~~~---~~~~~i~C~--------~C~~~~H~~C~~~~~~--------~~~~~~~~~C~~C   47 (47)
T smart00249        2 CSVCGKPD---DGGELLQCD--------GCDRWYHQTCLGPPLL--------EEEPDGKWYCPKC   47 (47)
T ss_pred             cccCCCcC---CCCCEEECC--------CCCchhhhhhCCCccc--------CCCCCCCEECcCC
Confidence            67888876   678899999        9999999999633222        1335668899877

The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the

>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]

Probab=93.11  E-value=0.31  Score=58.86  Aligned_cols=88  Identities=23%  Similarity=0.295  Sum_probs=70.5

Q ss_pred             ceEEEEEeeceeEEEEeCcCCCCCCCcceEEEEeeecCCCCCCCCceeeecCCceeEeecCCcceeeeEEEEeccCCc--
Q 004540          357 NMVKFEDVRATSLTVVLGSEDPSPGNIISYTLWHRRAHEGFPARPTCTLFAPNTRFVVTGLCPATEYQFKVVSSNGTT--  434 (746)
Q Consensus       357 ~~~rFEevt~tSv~vvL~~~~~s~~~i~Gy~LWhrks~~~y~~ePt~~~~~p~~r~~vs~L~P~TEY~fkvvsF~~~~--  434 (746)
                      .-+|.+.++++||++-+...+.....|.-|-|=|+...+.  +.--.++..+.++..|.+|.|.|.|.|+|=+.|..|  
T Consensus       447 ~~~r~~~~~~~sitlsW~~p~~png~ildYEvky~ek~~~--e~~~~~~~t~~~~~ti~gL~p~t~YvfqVRarT~aG~G  524 (996)
T KOG0196|consen  447 SVLRQVSRTSDSITLSWSEPDQPNGVILDYEVKYYEKDED--ERSYSTLKTKTTTATITGLKPGTVYVFQVRARTAAGYG  524 (996)
T ss_pred             ceEEEeeeccCceEEecCCCCCCCCcceeEEEEEeecccc--ccceeEEecccceEEeeccCCCcEEEEEEEEecccCCC
Confidence            4699999999999999999997777799999988887643  112236778889999999999999999999999865  


Q ss_pred             cCc-ceeeEEecC
Q 004540          435 ELG-RCEIWFSTG  446 (746)
Q Consensus       435 elg-~~E~k~~T~  446 (746)
                      .|+ ..|++..+.
T Consensus       525 ~~S~~~~fqT~~~  537 (996)
T KOG0196|consen  525 PYSGKHEFQTLPS  537 (996)
T ss_pred             CCCCceeeeecCc
Confidence            333 556666554

>KOG3513 consensus Neural cell adhesion molecule L1 [Signal transduction mechanisms]

Probab=84.90  E-value=2.5  Score=52.68  Aligned_cols=85  Identities=28%  Similarity=0.342  Sum_probs=57.3

Q ss_pred             CCCCCcccCceEEEEEeeceeEEEEeCcCC-CCCCCcceEEEEeeecCCC-CCCCCceeeecCCc---eeEeecCCccee
Q 004540          348 VQGSNVIVPNMVKFEDVRATSLTVVLGSED-PSPGNIISYTLWHRRAHEG-FPARPTCTLFAPNT---RFVVTGLCPATE  422 (746)
Q Consensus       348 ~q~~~l~~~~~~rFEevt~tSv~vvL~~~~-~s~~~i~Gy~LWhrks~~~-y~~ePt~~~~~p~~---r~~vs~L~P~TE  422 (746)
                      +++...|+. .+..++|+++++.|-..-.. .-+. |.+|.+=.|-..-. .-. -+ +++--.+   ...|-||.|=.|
T Consensus       611 V~gpPgpP~-~v~~~~i~~t~~~lsW~~g~dn~Sp-I~~Y~iq~rt~~~~~W~~-v~-~vp~~~~~~~sa~vv~L~Pwv~  686 (1051)
T KOG3513|consen  611 VRGPPGPPP-DVHVDDISDTTARLSWSPGSDNNSP-IEKYTIQFRTPFPGKWKA-VT-TVPGNITGDESATVVNLSPWVE  686 (1051)
T ss_pred             EecCCCCCC-ceeEeeeccceEEEEeecCCCCCCC-ceEEeEEecCCCCCcceE-ee-ECCCcccCccceeEEccCCCcc
Confidence            344333333 79999999999999888775 3234 99999866654332 111 11 2222222   477899999999


Q ss_pred             eeEEEEeccCCccC
Q 004540          423 YQFKVVSSNGTTEL  436 (746)
Q Consensus       423 Y~fkvvsF~~~~el  436 (746)
                      |.|||++++..|.=
T Consensus       687 YeFRV~AvN~iG~g  700 (1051)
T KOG3513|consen  687 YEFRVVAVNSIGIG  700 (1051)
T ss_pred             eEEEEEEEcccccC
Confidence            99999999987643

>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=84.22  E-value=0.19  Score=39.75  Aligned_cols=48  Identities=31%  Similarity=0.719  Sum_probs=34.6

Q ss_pred             eeeeccccCCCCCccEEecCCCCCCCCCcccchhhhhhhhhccccccccCCCccccceeEEeccCC
Q 004540          174 CCICRKYDDNKDPSLWLTCSSEPPFGGDSCGMSCHLECALKNERSGIGKDRCYSGLDGSFYCISCR  239 (746)
Q Consensus       174 C~IC~kfD~nkdp~~Wl~C~s~~~~~~~~CghscHleCALr~~~~G~~~~g~~~~lD~~f~C~~Cg  239 (746)
                      |.||.+   ..+...||.|+        .|+.|-|+.|.--....-..       .+..|+|..|-
T Consensus         2 C~vC~~---~~~~~~~i~C~--------~C~~~~H~~C~~~~~~~~~~-------~~~~w~C~~C~   49 (51)
T PF00628_consen    2 CPVCGQ---SDDDGDMIQCD--------SCNRWYHQECVGPPEKAEEI-------PSGDWYCPNCR   49 (51)
T ss_dssp             BTTTTS---SCTTSSEEEBS--------TTSCEEETTTSTSSHSHHSH-------HSSSBSSHHHH
T ss_pred             CcCCCC---cCCCCCeEEcC--------CCChhhCcccCCCChhhccC-------CCCcEECcCCc
Confidence            678888   45588999999        99999999997554442222       22278887763

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....

>PF07498 Rho_N: Rho termination factor, N-terminal domain; InterPro: IPR011112 The Rho termination factor disengages newly transcribed RNA from its DNA template at certain, specific transcripts

Probab=82.53  E-value=2.1  Score=33.87  Aligned_cols=39  Identities=36%  Similarity=0.514  Sum_probs=32.1

Q ss_pred             hchhcHHHHHHHHHHHhCCcccccCcchHHHHHHHHhhhcc
Q 004540           54 LRSWTRQEILQILCAELGKERKYTGLTKLKIIENLLKLVSE   94 (746)
Q Consensus        54 LqswsR~Eil~ilCAe~gkERKYtgltK~k~ie~Llk~vs~   94 (746)
                      |+++|..||.+ |+.++|-+ .|+++.|..+|..|++.-++
T Consensus         2 L~~~~~~eL~~-iAk~lgI~-~~~~~~K~eLI~~Il~~q~~   40 (43)
T PF07498_consen    2 LKSMTLSELRE-IAKELGIE-GYSKMRKQELIFAILKAQAE   40 (43)
T ss_dssp             HHCS-HHHHHH-HHHCTT-T-TGCCS-HHHHHHHHHHHHCT
T ss_pred             cccCCHHHHHH-HHHHcCCC-CCCcCCHHHHHHHHHHHHHH
Confidence            78889999988 89999998 58999999999999998875

It is thought that two copies of Rho bind to RNA and that Rho functions as a hexamer of protomers []. This domain is found to the N terminus of the RNA binding domain (IPR011113 from INTERPRO).; GO: 0006353 transcription termination, DNA-dependent; PDB: 1A8V_B 1PVO_A 1PV4_D 3ICE_A 1XPU_C 1XPO_D 1XPR_F 2A8V_B 2HT1_B 1A63_A ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	746
3b83_A	100	Ten-D3; beta sheet, computational redesigned prote	1e-09
1j8k_A	94	Fibronectin; EDA, TYPEIII domain, protein binding;	1e-09
2ocf_D	121	Fibronectin; estrogen receptor, LBD, monobody, est	1e-09
3teu_A	98	Fibcon; FN3 domain, fibronectin TPYE III domain, c	3e-09
2rb8_A	104	Tenascin; beta sheet,loop design, alternative spli	1e-08
2ekj_A	105	Collagen alpha-1(XX) chain; KIAA1510, structural g	3e-08
2ee3_A	108	Collagen alpha-1(XX) chain; KIAA1510, structural g	3e-08
3tes_A	98	Tencon; fibronectin type III domain, FN3, consensu	3e-08
3qht_C	97	Monobody YSMB-1; fibronectin type III, yeast small	6e-08
3qwq_B	114	Adnectin; cell surface receptor, tyrosine kinase,	6e-08
1x5f_A	120	Neogenin; RGM binding, fibronectin type III domain	9e-08
3r8q_A	290	Fibronectin; heparin, FNIII, heparin binding, cell	1e-07
3r8q_A	290	Fibronectin; heparin, FNIII, heparin binding, cell	6e-07
3r8q_A	290	Fibronectin; heparin, FNIII, heparin binding, cell	9e-06
2yrz_A	118	Integrin beta-4; GP150, CD104 antigen, structural	1e-07
2ha1_A	201	Fibronectin; beta sandwich, protein-protein comple	2e-07
2ha1_A	201	Fibronectin; beta sandwich, protein-protein comple	3e-06
2cuh_A	115	Tenascin-X; fibronectin type III domain, extracell	2e-07
1tdq_A	283	Tenascin-R; extracellular matrix, lecticans, tenas	2e-07
1tdq_A	283	Tenascin-R; extracellular matrix, lecticans, tenas	1e-06
1tdq_A	283	Tenascin-R; extracellular matrix, lecticans, tenas	5e-05
2gee_A	203	Hypothetical protein; fibronectin, EIIIB, cancer,	3e-07
2gee_A	203	Hypothetical protein; fibronectin, EIIIB, cancer,	1e-05
1x5z_A	115	Receptor-type tyrosine-protein phosphatase delta;	3e-07
1qr4_A	186	Protein (tenascin); fibronectin type-III, heparin,	4e-07
1qr4_A	186	Protein (tenascin); fibronectin type-III, heparin,	1e-05
2cum_A	105	Tenascin-X; hexabrachion-like, fibronectin type II	5e-07
1fnf_A	368	Fibronectin; RGD, extracellular matrix, cell adhes	5e-07
1fnf_A	368	Fibronectin; RGD, extracellular matrix, cell adhes	2e-06
1fnf_A	368	Fibronectin; RGD, extracellular matrix, cell adhes	2e-06
1fnf_A	368	Fibronectin; RGD, extracellular matrix, cell adhes	3e-05
2h41_A	95	Fibronectin; beta sandwich, cell adhesion, structu	6e-07
3t1w_A	375	Four-domain fibronectin fragment; human fibronecti	8e-07
3t1w_A	375	Four-domain fibronectin fragment; human fibronecti	1e-06
3t1w_A	375	Four-domain fibronectin fragment; human fibronecti	3e-06
3t1w_A	375	Four-domain fibronectin fragment; human fibronecti	1e-05
1wfo_A	130	Sidekick 2; FN3, cell adhesion, structural genomic	2e-06
3f7q_A	234	Integrin beta-4, GP150; hemidesmosome, cell adhesi	3e-06
3k2m_C	101	Monobody HA4; engineered binding protein, antibody	4e-06
2ed7_A	119	Netrin receptor DCC; tumor suppressor protein DCC,	4e-06
2dju_A	106	Receptor-type tyrosine-protein phosphatase F; LAR	4e-06
3t04_D	103	Monobody 7C12; engineered binding protein, antibod	5e-06
2e7h_A	109	Ephrin type-B receptor 4; FN3 domain, tyrosine- pr	5e-06
2kbg_A	114	N-CAM 2, neural cell adhesion molecule 2; fibronec	6e-06
1x4x_A	106	Fibronectin type-III domain containing protein 3A;	7e-06
2e3v_A	122	Neural cell adhesion molecule 1, 140 kDa isoform;	7e-06
1cfb_A	205	Drosophila neuroglian; neural adhesion molecule; H	8e-06
2haz_A	105	N-CAM 1, neural cell adhesion molecule 1; fibronec	8e-06
1uey_A	127	KIAA0343 protein; immunoglobulin-like beta-sandwic	1e-05
2db8_A	110	Tripartite motif protein 9, isoform 2; ring finger	1e-05
1x3d_A	118	Fibronectin type-III domain containing protein 3A;	1e-05
3p4l_A	211	Neogenin; iron homeostasis, hemojuvelin receptor,	2e-05
3p4l_A	211	Neogenin; iron homeostasis, hemojuvelin receptor,	5e-05
2cui_A	112	Tenascin-X; fibronectin type III domain, extracell	2e-05
2dn7_A	107	Receptor-type tyrosine-protein phosphatase F; LAR	2e-05
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	2e-05
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	9e-05
1zlg_A	680	Anosmin 1; insulin-like growth factor receptor Cys	2e-05
1zlg_A	680	Anosmin 1; insulin-like growth factor receptor Cys	1e-04
2edb_A	116	Netrin receptor DCC; tumor suppressor protein DCC,	2e-05
2ibg_A	214	CG9211-PA, GH03927P; IHOG, fibronectin type III, p	3e-05
2yuw_A	110	Myosin binding protein C, SLOW type; fibronectin I	3e-05
1x5x_A	109	Fibronectin type-III domain containing protein 3A;	3e-05
1x5l_A	111	Ephrin type-A receptor 8; FN3 domain, structural g	3e-05
1wfn_A	119	Sidekick 2; FN3, cell adhesion, structural genomic	4e-05
2vkw_A	209	Neural cell adhesion molecule 1,140 kDa isoform; a	5e-05
2dkm_A	104	Collagen alpha-1(XX) chain; FN3 domain, KIAA1510,	6e-05
2djs_A	108	Ephrin type-B receptor 1; tyrosine-protein kinase	7e-05
1wfu_A	120	Unnamed protein product; FN3 domain, similar to 17	8e-05
3lpw_A	197	A77-A78 domain from titin; intracellular FNIII-tan	8e-05
2ic2_A	115	CG9211-PA, GH03927P; IHOG, hedgehog, fibronectin t	1e-04
2dlh_A	121	Receptor-type tyrosine-protein phosphatase delta;	1e-04
3l5h_A	589	Interleukin-6 receptor subunit beta; IG-like, FNII	1e-04
1x4z_A	121	Biregional cell adhesion molecule-related/DOWN- re	1e-04
1x5y_A	111	Myosin binding protein C, fast-type; fast MYBP-C,	1e-04
1x5a_A	107	Ephrin type-A receptor 1; tyrosine-protein kinase	1e-04
3fl7_A	536	Ephrin receptor; ATP-binding, kinase, nucleotide-b	2e-04
2ee2_A	119	Contactin-1; neural cell surface protein F3, glyco	2e-04
1x5j_A	113	Neogenin; RGM binding, fibronectin type III domain	3e-04
1wf5_A	121	Sidekick 2 protein; FNIII domain, structural genom	3e-04
1wis_A	124	KIAA1514 protein; FNIII domain, sidekick-2, struct	3e-04
2edd_A	123	Netrin receptor DCC; tumor suppressor protein DCC,	4e-04
1x5g_A	116	Neogenin; RGM binding, fibronectin type III domain	4e-04
2ed8_A	106	Netrin receptor DCC; tumor suppressor protein DCC,	4e-04
1x5i_A	126	Neogenin; RGM binding, fibronectin type III domain	5e-04
2edy_A	103	Receptor-type tyrosine-protein phosphatase F; LAR	7e-04
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	8e-04

>3b83_A Ten-D3; beta sheet, computational redesigned protein, alternative splicing, cell adhesion, coiled coil, EGF-like domain, extracellular matrix; 2.40A {Homo sapiens} Length = 100

 Score = 55.1 bits (133), Expect = 1e-09
 Identities = 21/94 (22%), Positives = 34/94 (36%), Gaps = 4/94 (4%)

Query: 356 PNMVKFEDVRATSLTVVLGSEDPSPGNIISYTLWHRRAHEGFPARPTCTLFAPNTRFVVT 415
           P  +K  ++  T+  V   +  P    I    +             T  L +  T   +T
Sbjct: 5   PFNIKVTNITLTTAVV---TWQPPILPIEGILV-TFGRKNDPSDETTVDLTSSITSLTLT 60

Query: 416 GLCPATEYQFKVVSSNGTTELGRCEIWFSTGSSR 449
            L P T Y+ ++V+ NG          F+TGS  
Sbjct: 61  NLEPNTTYEIRIVARNGQQYSPPVSTTFTTGSLE 94

>1j8k_A Fibronectin; EDA, TYPEIII domain, protein binding; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 94

 Score = 54.7 bits (132), Expect = 1e-09
 Identities = 16/80 (20%), Positives = 29/80 (36%), Gaps = 4/80 (5%)

Query: 356 PNMVKFEDVRATSLTVVLGSEDPSPGNIISYTLWHRRAHEGFPARPTCTLFAPNTRFVVT 415
           P  + F DV   S+ +   + +   G +  Y + +    +G                 + 
Sbjct: 5   PKGLAFTDVDVDSIKI---AWESPQGQVSRYRVTYSSPEDGIH-ELFPAPDGEEDTAELQ 60

Query: 416 GLCPATEYQFKVVSSNGTTE 435
           GL P +EY   VV+ +   E
Sbjct: 61  GLRPGSEYTVSVVALHDDME 80

>2ocf_D Fibronectin; estrogen receptor, LBD, monobody, estradiol, hormone-growth complex; HET: CME EST; 2.95A {Homo sapiens} Length = 121

 Score = 55.7 bits (134), Expect = 1e-09
 Identities = 20/90 (22%), Positives = 33/90 (36%), Gaps = 4/90 (4%)

Query: 344 PNPSVQGSNVIVPNMVKFEDVRATSLTVVLGSEDPSPGNIISYTLWHRRAHEGFPARPTC 403
            N   QGS   VP  ++      TSL +   S D     +  Y + +       P +   
Sbjct: 20  ENLYFQGSVSDVPTKLEVVAATPTSLLI---SWDAPAVTVRYYRITYGETGGNSPVQ-EF 75

Query: 404 TLFAPNTRFVVTGLCPATEYQFKVVSSNGT 433
           T+    +   ++GL P  +Y   V +  G 
Sbjct: 76  TVPGSKSTATISGLKPGVDYTITVYAVTGL 105

>3teu_A Fibcon; FN3 domain, fibronectin TPYE III domain, consensus design, S de novo protein; HET: DIO; 1.00A {Synthetic} Length = 98

 Score = 54.0 bits (130), Expect = 3e-09
 Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 4/77 (5%)

Query: 356 PNMVKFEDVRATSLTVVLGSEDPSPGNIISYTLWHRRAHEGFPARPTCTLFAPNTRFVVT 415
           P  ++  +V  TS+TV   S  P    I  Y + +  ++ G       T+   +T   +T
Sbjct: 5   PTDLQVTNVTDTSITV---SWTPPSATITGYRITYTPSN-GPGEPKELTVPPSSTSVTIT 60

Query: 416 GLCPATEYQFKVVSSNG 432
           GL P  EY   V +   
Sbjct: 61  GLTPGVEYVVSVYALKD 77

>2rb8_A Tenascin; beta sheet,loop design, alternative splicing, cell adhesion, coiled coil, EGF-like domain, extracellular matrix, glycoprotein; 1.45A {Homo sapiens} PDB: 2rbl_A 1ten_A Length = 104

 Score = 52.4 bits (126), Expect = 1e-08
 Identities = 18/91 (19%), Positives = 36/91 (39%), Gaps = 4/91 (4%)

Query: 356 PNMVKFEDVRATSLTVVLGSEDPSPGNIISYTLWHRRAHEGFPARPTCTLFAPNTRFVVT 415
           P+ ++ +DV  T+  +   +  P    +  + L +           T  L     ++ + 
Sbjct: 6   PSQIEVKDVTDTTALI---TWMPPSQPVDGFELTYGIKDVPGDRT-TIDLTEDENQYSIG 61

Query: 416 GLCPATEYQFKVVSSNGTTELGRCEIWFSTG 446
            L P TEY+  ++S  G       +  F+TG
Sbjct: 62  NLKPDTEYEVSLISRRGDMSSNPAKETFTTG 92

>2ekj_A Collagen alpha-1(XX) chain; KIAA1510, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 105

 Score = 51.3 bits (123), Expect = 3e-08
 Identities = 16/77 (20%), Positives = 29/77 (37%), Gaps = 4/77 (5%)

Query: 356 PNMVKFEDVRATSLTVVLGSEDPSPGNIISYTLWHRRAHEGFPARPTCTLFAPNTRFVVT 415
           P+ +        SL V   S  P  G ++ Y L +  A    P +   ++    +   + 
Sbjct: 11  PSNLALASETPDSLQV---SWTPPLGRVLHYWLTYAPASGLGPEKSV-SVPGARSHVTLP 66

Query: 416 GLCPATEYQFKVVSSNG 432
            L  AT+Y+  V +   
Sbjct: 67  DLQAATKYRVLVSAIYA 83

>2ee3_A Collagen alpha-1(XX) chain; KIAA1510, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 108

 Score = 51.7 bits (124), Expect = 3e-08
 Identities = 12/80 (15%), Positives = 24/80 (30%), Gaps = 5/80 (6%)

Query: 356 PNMVKFEDVRATSLTVVLGSEDPSPGNIISYTLWHRRAHEGFPARPTCTLFAPNTRFVVT 415
           P  + F DV   +  V     + +P  +    + +  +  G             T  ++ 
Sbjct: 11  PRHLGFSDVSHDAARV---FWEGAPRPVRLVRVTYVSSEGGHS--GQTEAPGNATSAMLG 65

Query: 416 GLCPATEYQFKVVSSNGTTE 435
            L  +T Y  +V        
Sbjct: 66  PLSSSTTYTVRVTCLYPGGG 85

>3tes_A Tencon; fibronectin type III domain, FN3, consensus design, de novo; 2.50A {Synthetic} Length = 98

 Score = 51.3 bits (123), Expect = 3e-08
 Identities = 19/94 (20%), Positives = 33/94 (35%), Gaps = 4/94 (4%)

Query: 356 PNMVKFEDVRATSLTVVLGSEDPSPGNIISYTLWHRRAHEGFPARPTCTLFAPNTRFVVT 415
           P  +   +V   SL +   S         S+ + ++ + +   A    T+      + +T
Sbjct: 5   PKNLVVSEVTEDSLRL---SWTAPDAAFDSFMIQYQESEKVGEAINL-TVPGSERSYDLT 60

Query: 416 GLCPATEYQFKVVSSNGTTELGRCEIWFSTGSSR 449
           GL P TEY   +    G          F+TG   
Sbjct: 61  GLKPGTEYTVSIYGVKGGHRSNPLSAEFTTGGHH 94

>3qht_C Monobody YSMB-1; fibronectin type III, yeast small ubiquitin-like modifier, S NOVO protein; 2.40A {Artificial gene} Length = 97

 Score = 50.1 bits (120), Expect = 6e-08
 Identities = 16/78 (20%), Positives = 31/78 (39%), Gaps = 4/78 (5%)

Query: 355 VPNMVKFEDVRATSLTVVLGSEDPSPGNIISYTLWHRRAHEGFPARPTCTLFAPNTRFVV 414
           VP  ++      TSL +   S D S  ++  Y + +       P +   T+   ++   +
Sbjct: 7   VPTKLEVVAATPTSLLI---SWDASSSSVSYYRITYGETGGNSPVQEF-TVPGSSSTATI 62

Query: 415 TGLCPATEYQFKVVSSNG 432
           +GL P  +Y   V +   
Sbjct: 63  SGLSPGVDYTITVYAYYS 80

>3qwq_B Adnectin; cell surface receptor, tyrosine kinase, glycoprotein, adnect antitumor, drug, engineered binding protein; HET: NAG BMA MAN FUC; 2.75A {Homo sapiens} PDB: 3qwr_D* Length = 114

 Score = 50.7 bits (121), Expect = 6e-08
 Identities = 17/83 (20%), Positives = 29/83 (34%), Gaps = 4/83 (4%)

Query: 355 VPNMVKFEDVRATSLTVVLGSEDPSPGNIISYTLWHRRAHEGFPARPTCTLFAPNTRFVV 414
           VP  ++      TSL +   S D   G+   Y + +       P +   T+  P     +
Sbjct: 6   VPRDLEVVAATPTSLLI---SWDSGRGSYQYYRITYGETGGNSPVQEF-TVPGPVHTATI 61

Query: 415 TGLCPATEYQFKVVSSNGTTELG 437
           +GL P  +Y   V +        
Sbjct: 62  SGLKPGVDYTITVYAVTDHKPHA 84

>1x5f_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 120

 Score = 50.5 bits (121), Expect = 9e-08
 Identities = 17/78 (21%), Positives = 33/78 (42%), Gaps = 4/78 (5%)

Query: 356 PNMVKFEDVRATSLTV--VLGSEDPSPGNIISYTLWHRRAHEGFPARPTCTLFAPNTRFV 413
           P  V    V    + +     + DP  G+ ++Y++++ +       R   T      +  
Sbjct: 21  PRDVVASLVSTRFIKLTWRTPASDP-HGDNLTYSVFYTKEGIA-RERVENTSHPGEMQVT 78

Query: 414 VTGLCPATEYQFKVVSSN 431
           +  L PAT Y F+V++ N
Sbjct: 79  IQNLMPATVYIFRVMAQN 96

>3r8q_A Fibronectin; heparin, FNIII, heparin binding, cell adhesion; 2.40A {Homo sapiens} PDB: 1fnh_A Length = 290

 Score = 52.9 bits (127), Expect = 1e-07
 Identities = 19/77 (24%), Positives = 28/77 (36%), Gaps = 4/77 (5%)

Query: 356 PNMVKFEDVRATSLTVVLGSEDPSPGNIISYTLWHRRAHEGFPARPTCTLFAPNTRFVVT 415
           P+ ++F      SL V   S  P    I  Y + + +     P           T   +T
Sbjct: 205 PSNLRFLATTPNSLLV---SWQPPRARITGYIIKYEKP-GSPPREVVPRPRPGVTEATIT 260

Query: 416 GLCPATEYQFKVVSSNG 432
           GL P TEY   V++   
Sbjct: 261 GLEPGTEYTIYVIALKN 277

>3r8q_A Fibronectin; heparin, FNIII, heparin binding, cell adhesion; 2.40A {Homo sapiens} PDB: 1fnh_A Length = 290

 Score = 51.0 bits (122), Expect = 6e-07
 Identities = 19/77 (24%), Positives = 30/77 (38%), Gaps = 4/77 (5%)

Query: 356 PNMVKFEDVRATSLTVVLGSEDPSPGNIISYTLWHRRAHEGFPARPTCTLFAPNTRFVVT 415
           P  +KF  V  TSL+       P    +  Y +      +  P      L   ++  VV+
Sbjct: 24  PTDLKFTQVTPTSLSA---QWTPPNVQLTGYRVRVTPKEKTGP-MKEINLAPDSSSVVVS 79

Query: 416 GLCPATEYQFKVVSSNG 432
           GL  AT+Y+  V +   
Sbjct: 80  GLMVATKYEVSVYALKD 96

>3r8q_A Fibronectin; heparin, FNIII, heparin binding, cell adhesion; 2.40A {Homo sapiens} PDB: 1fnh_A Length = 290

 Score = 47.1 bits (112), Expect = 9e-06
 Identities = 16/77 (20%), Positives = 30/77 (38%), Gaps = 5/77 (6%)

Query: 356 PNMVKFEDVRATSLTVVLGSEDPSPGNIISYTLWHRRAHEGFPARPTCTLFAPNTRFVVT 415
           P   +  D   T++T+   S       I  + +    A+   P + T         + +T
Sbjct: 116 PRRARVTDATETTITI---SWRTKTETITGFQVDAVPANGQTPIQRTIK--PDVRSYTIT 170

Query: 416 GLCPATEYQFKVVSSNG 432
           GL P T+Y+  + + N 
Sbjct: 171 GLQPGTDYKIYLYTLND 187

>2yrz_A Integrin beta-4; GP150, CD104 antigen, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 118

 Score = 49.7 bits (119), Expect = 1e-07
 Identities = 18/78 (23%), Positives = 29/78 (37%), Gaps = 6/78 (7%)

Query: 356 PNMVKFEDVRATSLTVVLGS--EDPSPGNIISYTLWHRRAHEGFPARPTCTLFAPNTRFV 413
           P  + F  +  TSL V   S  E      +  Y++ ++  + G             T  V
Sbjct: 21  PTRLVFSALGPTSLRV---SWQEPRCERPLQGYSVEYQLLNGG-ELHRLNIPNPAQTSVV 76

Query: 414 VTGLCPATEYQFKVVSSN 431
           V  L P   Y F+V + +
Sbjct: 77  VEDLLPNHSYVFRVRAQS 94

>2ha1_A Fibronectin; beta sandwich, protein-protein complex, rigid BODY docking, cell adhesion, structural protein; NMR {Homo sapiens} Length = 201

 Score = 51.2 bits (122), Expect = 2e-07
 Identities = 14/119 (11%), Positives = 32/119 (26%), Gaps = 7/119 (5%)

Query: 314 VNRLSSGPEVQKLCACAVESLDKMISNTILPNPSVQGSNVIVPNMVKFEDVRATSLTVVL 373
           + +       +        S     +               V       ++ A+S  V  
Sbjct: 76  IQQYGHQEVTRFDFTTTSTSTPVTSNTVTGETTPFSPL---VATSESVTEITASSFVV-- 130

Query: 374 GSEDPSPGNIISYTLWHRRAHEGFPARPTCTLFAPNTRFVVTGLCPATEYQFKVVSSNG 432
            S   +   +  + + +  + EG   +    L +  T   +  L P  +Y   V   + 
Sbjct: 131 -SWVSASDTVSGFRVEYELSEEGDEPQYL-DLPSTATSVNIPDLLPGRKYIVNVYQISE 187

>2ha1_A Fibronectin; beta sandwich, protein-protein complex, rigid BODY docking, cell adhesion, structural protein; NMR {Homo sapiens} Length = 201

 Score = 47.7 bits (113), Expect = 3e-06
 Identities = 25/159 (15%), Positives = 50/159 (31%), Gaps = 18/159 (11%)

Query: 355 VPNMVKFEDVRATSLTVVLGSEDPSPGNIISYTLWHRRAHEGFPARPTCTLFAPNTRFVV 414
           V   +     +  S  +   +  P P +I  Y L  R  +     +   T+      + +
Sbjct: 4   VEVFITETPSQPNSHPIQWNA--PQPSHISKYILRWRPKNSVGRWK-EATIPGHLNSYTI 60

Query: 415 TGLCPATEYQFKVVSSNGTTELGRCEIWFSTGSSRDEVTNCSVIERSQSPATNCSSLSNP 474
            GL P   Y+ +++S             F+T S+   VT         +  T  ++  +P
Sbjct: 61  KGLKPGVVYEGQLISIQQYGHQEVTRFDFTTTSTSTPVT--------SNTVTGETTPFSP 112

Query: 475 SSVEDET-NNVTPDR-----DPNDAQVNNYY-TYSKETD 506
                E+   +T              V+ +   Y    +
Sbjct: 113 LVATSESVTEITASSFVVSWVSASDTVSGFRVEYELSEE 151

>2cuh_A Tenascin-X; fibronectin type III domain, extracellular matrix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 115

 Score = 49.0 bits (117), Expect = 2e-07
 Identities = 16/111 (14%), Positives = 31/111 (27%), Gaps = 8/111 (7%)

Query: 356 PNMVKFEDVRATSLTVVLGSEDPSPGNIISYTLWHRRAHEGFPARPTCTLFAPNTRFVVT 415
           P  ++  ++      +      P    + +Y +       G P             + + 
Sbjct: 11  PTQLRALNLTEGFAVL---HWKPPQNPVDTYDIQVT--APGAPPL-QAETPGSAVDYPLH 64

Query: 416 GLCPATEYQFKVVSSNGTTELGRCEIWFSTGSSRDEVTNCSVIERSQSPAT 466
            L   T Y   V    G        I F+TG   +   +    E + S  +
Sbjct: 65  DLVLHTNYTATVRGLRGPNLTSPASITFTTGL--EAPRDLEAKEVTPSGPS 113

>1tdq_A Tenascin-R; extracellular matrix, lecticans, tenascins, protein-protein interactions, C-type lectin domain; 2.60A {Rattus norvegicus} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 Length = 283

 Score = 52.1 bits (125), Expect = 2e-07
 Identities = 14/80 (17%), Positives = 27/80 (33%), Gaps = 6/80 (7%)

Query: 356 PNMVKFEDVRATSLTVVLGSEDPSPGNIISYTLWHRRAHEGFPARPTCTLFAPNTRFVVT 415
           P  +       TS+++       + G I  Y +    +          T+    T + +T
Sbjct: 200 PRDLMVTASSETSISL---IWTKASGPIDHYRITFTPSSGI---SSEVTVPRDRTSYTLT 253

Query: 416 GLCPATEYQFKVVSSNGTTE 435
            L P  EY   + +  G  +
Sbjct: 254 DLEPGAEYIISITAERGRQQ 273

>1tdq_A Tenascin-R; extracellular matrix, lecticans, tenascins, protein-protein interactions, C-type lectin domain; 2.60A {Rattus norvegicus} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 Length = 283

 Score = 49.8 bits (119), Expect = 1e-06
 Identities = 24/108 (22%), Positives = 38/108 (35%), Gaps = 6/108 (5%)

Query: 356 PNMVKFEDVRATSLTVVLGSEDPSPGNIISYTLWHRRAHEGFPARPTCTLFAPNTRFVVT 415
           P  +   DV  T   V      P    +    L +     G   + T  L  P +++ V 
Sbjct: 18  PTQILVRDVSDTVAFV---EWTPPRAKVDFILLKYGLVG-GEGGKTTFRLQPPLSQYSVQ 73

Query: 416 GLCPATEYQFKVVSSNGTTELGRCEIWFSTGSSRDEVTNCSVIERSQS 463
            L P + Y+  + +  GT E       F+T    D   N  V  R+ +
Sbjct: 74  ALRPGSRYEVSISAVRGTNESDASSTQFTTEI--DAPKNLRVGSRTAT 119

>1tdq_A Tenascin-R; extracellular matrix, lecticans, tenascins, protein-protein interactions, C-type lectin domain; 2.60A {Rattus norvegicus} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 Length = 283

 Score = 44.8 bits (106), Expect = 5e-05
 Identities = 18/81 (22%), Positives = 30/81 (37%), Gaps = 4/81 (4%)

Query: 356 PNMVKFEDVRATSLTVVLGSEDPSPGNIISYTL-WHRRAHEGFPARPTCTLFAPNTRFVV 414
           P  ++     ATSL +     D S      Y + +   A E +          P T+  +
Sbjct: 108 PKNLRVGSRTATSLDL---EWDNSEAEAQEYKVVYSTLAGEQYHEVLVPKGIGPTTKTTL 164

Query: 415 TGLCPATEYQFKVVSSNGTTE 435
           T L P TEY   + +   + +
Sbjct: 165 TDLVPGTEYGVGISAVMNSKQ 185

>2gee_A Hypothetical protein; fibronectin, EIIIB, cancer, neovascularization, cell adhesion, protein binding, oncoprotein; 2.01A {Homo sapiens} PDB: 2fnb_A Length = 203

 Score = 51.0 bits (122), Expect = 3e-07
 Identities = 21/109 (19%), Positives = 35/109 (32%), Gaps = 7/109 (6%)

Query: 356 PNMVKFEDVRATSLTVVLGS-EDPSPGNIISYTLWHRRAHEGFPARPTCTLFAPNTRFVV 414
           P  + F D+  +S+ +        +   II Y +    A EG P      + +    + V
Sbjct: 26  PTDLSFVDITDSSIGL---RWTPLNSSTIIGYRITVVAAGEGIPIF-EDFVDSSVGYYTV 81

Query: 415 TGLCPATEYQFKVVSSNGTTELGRCEIWFSTGSSRDEVTNCSVIERSQS 463
           TGL P  +Y   V +     E     +   T       T+         
Sbjct: 82  TGLEPGIDYDISVYTVKNGGESTPTTLTQQTAV--PPPTDLRFTNIGPD 128

>2gee_A Hypothetical protein; fibronectin, EIIIB, cancer, neovascularization, cell adhesion, protein binding, oncoprotein; 2.01A {Homo sapiens} PDB: 2fnb_A Length = 203

 Score = 45.6 bits (108), Expect = 1e-05
 Identities = 14/81 (17%), Positives = 31/81 (38%), Gaps = 5/81 (6%)

Query: 356 PNMVKFEDVRATSLTVVLGS-EDPSPGNIISYTLWHRRAHEGFPARPTCTLFAPNTRFVV 414
           P  ++F ++   ++ V   +   P   ++ ++ + +             ++   +   V+
Sbjct: 117 PTDLRFTNIGPDTMRV---TWAPPPSIDLTNFLVRYSPVKNEEDVAEL-SISPSDNAVVL 172

Query: 415 TGLCPATEYQFKVVSSNGTTE 435
           T L P TEY   V S     E
Sbjct: 173 TNLLPGTEYVVSVSSVYEQHE 193

>1x5z_A Receptor-type tyrosine-protein phosphatase delta; fibronectin type III domain containing protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 115

 Score = 48.5 bits (116), Expect = 3e-07
 Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 7/77 (9%)

Query: 356 PNMVKFEDVRATSLTVVLGS-EDPSPGNIISYTLWHRRAHEGFPARPTCTLFAPNTRFVV 414
           P   K E    TS+ +   S   P    I +Y L ++    G   R T     P T + +
Sbjct: 21  PLNFKAEPESETSILL---SWTPPRSDTIANYELVYKDGEHGEEQRIT---IEPGTSYRL 74

Query: 415 TGLCPATEYQFKVVSSN 431
            GL P + Y F++ + +
Sbjct: 75  QGLKPNSLYYFRLAARS 91

>1qr4_A Protein (tenascin); fibronectin type-III, heparin, extracellular matrix, adhesion, fusion protein, structural protein; 2.55A {Gallus gallus} SCOP: b.1.2.1 b.1.2.1 Length = 186

 Score = 49.7 bits (119), Expect = 4e-07
 Identities = 20/77 (25%), Positives = 30/77 (38%), Gaps = 5/77 (6%)

Query: 356 PNMVKFEDVRATSLTVVLGSEDPSPGNIISYTLWHRRAHEGFPARPTCTLFAPNTRFVVT 415
           P  + F D+   S TV   S  P    + SY + +     G P     T+    TR  + 
Sbjct: 98  PKGISFSDITENSATV---SWTPPRSRVDSYRVSYVPITGGTPN--VVTVDGSKTRTKLV 152

Query: 416 GLCPATEYQFKVVSSNG 432
            L P  +Y   ++S  G
Sbjct: 153 KLVPGVDYNVNIISVKG 169

>1qr4_A Protein (tenascin); fibronectin type-III, heparin, extracellular matrix, adhesion, fusion protein, structural protein; 2.55A {Gallus gallus} SCOP: b.1.2.1 b.1.2.1 Length = 186

 Score = 45.9 bits (109), Expect = 1e-05
 Identities = 19/108 (17%), Positives = 37/108 (34%), Gaps = 8/108 (7%)

Query: 356 PNMVKFEDVRATSLTVVLGSEDPSPGNIISYTLWHRRAHEGFPARPTCTLFAPNTRFVVT 415
           P  ++  D   T+L++              Y L +         +    +   +T F++ 
Sbjct: 10  PKDLEVSDPTETTLSL---RWRRPVAKFDRYRLTYVSPSGK---KNEMEIPVDSTSFILR 63

Query: 416 GLCPATEYQFKVVSSNGTTELGRCEIWFSTGSSRDEVTNCSVIERSQS 463
           GL   TEY   +V+  G  +     I  ST          S  + +++
Sbjct: 64  GLDAGTEYTISLVAEKGRHKSKPTTIKGSTVVGS--PKGISFSDITEN 109

>2cum_A Tenascin-X; hexabrachion-like, fibronectin type III domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 105

 Score = 47.8 bits (114), Expect = 5e-07
 Identities = 18/94 (19%), Positives = 32/94 (34%), Gaps = 6/94 (6%)

Query: 356 PNMVKFEDVRATSLTVVLGSEDPSPGNIISYTLWHRRAHEGFPARPTCTLFAPNTRFVVT 415
           P  ++ ++V   +  +   +    P     Y L                L    T   + 
Sbjct: 11  PRDLEAKEVTPRTALL---TWTEPPVRPAGYLLSFHTPGG---QTQEILLPGGITSHQLL 64

Query: 416 GLCPATEYQFKVVSSNGTTELGRCEIWFSTGSSR 449
           GL P+T Y  ++ +  G + L      F+TG  R
Sbjct: 65  GLFPSTSYNARLQAMWGQSLLPPVSTSFTTGGLR 98

>1fnf_A Fibronectin; RGD, extracellular matrix, cell adhesion protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1mfn_A 2mfn_A 2ck2_A Length = 368

 Score = 51.4 bits (123), Expect = 5e-07
 Identities = 21/77 (27%), Positives = 28/77 (36%), Gaps = 4/77 (5%)

Query: 356 PNMVKFEDVRATSLTVVLGSEDPSPGNIISYTLWHRRAHEGFPARPTCTLFAPNTRFVVT 415
           P  + F D+ A S TV           I  Y + H   H     R    +        +T
Sbjct: 189 PTGIDFSDITANSFTV---HWIAPRATITGYRIRHHPEHFSGRPRED-RVPHSRNSITLT 244

Query: 416 GLCPATEYQFKVVSSNG 432
            L P TEY   +V+ NG
Sbjct: 245 NLTPGTEYVVSIVALNG 261

>1fnf_A Fibronectin; RGD, extracellular matrix, cell adhesion protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1mfn_A 2mfn_A 2ck2_A Length = 368

 Score = 49.8 bits (119), Expect = 2e-06
 Identities = 16/78 (20%), Positives = 29/78 (37%), Gaps = 4/78 (5%)

Query: 355 VPNMVKFEDVRATSLTVVLGSEDPSPGNIISYTLWHRRAHEGFPARPTCTLFAPNTRFVV 414
           VP  ++      TSL +   S D     +  Y + +       P +   T+    +   +
Sbjct: 278 VPRDLEVVAATPTSLLI---SWDAPAVTVRYYRITYGETGGNSPVQEF-TVPGSKSTATI 333

Query: 415 TGLCPATEYQFKVVSSNG 432
           +GL P  +Y   V +  G
Sbjct: 334 SGLKPGVDYTITVYAVTG 351

>1fnf_A Fibronectin; RGD, extracellular matrix, cell adhesion protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1mfn_A 2mfn_A 2ck2_A Length = 368

 Score = 49.4 bits (118), Expect = 2e-06
 Identities = 13/80 (16%), Positives = 23/80 (28%), Gaps = 1/80 (1%)

Query: 356 PNMVKFEDVRATSLTVVLGSEDPSPGNIISYTLWHRRAHEGFPARPTCTLFAPNTRFVVT 415
           P  +  E    T   + +  E  +  +I  Y +     +          + A  +     
Sbjct: 5   PTNLHLEANPDTG-VLTVSWERSTTPDITGYRITTTPTNGQQGNSLEEVVHADQSSCTFD 63

Query: 416 GLCPATEYQFKVVSSNGTTE 435
            L P  EY   V +     E
Sbjct: 64  NLSPGLEYNVSVYTVKDDKE 83

>1fnf_A Fibronectin; RGD, extracellular matrix, cell adhesion protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1mfn_A 2mfn_A 2ck2_A Length = 368

 Score = 46.0 bits (109), Expect = 3e-05
 Identities = 14/81 (17%), Positives = 31/81 (38%), Gaps = 5/81 (6%)

Query: 356 PNMVKFEDVRATSLTVVLGS-EDPSPGNIISYTLWHRRAHEGFPARPTCTLFAPNTRFVV 414
           P  ++F ++   ++ V   +   P   ++ ++ + +             ++   +   V+
Sbjct: 98  PTDLRFTNIGPDTMRV---TWAPPPSIDLTNFLVRYSPVKNEEDVAEL-SISPSDNAVVL 153

Query: 415 TGLCPATEYQFKVVSSNGTTE 435
           T L P TEY   V S     E
Sbjct: 154 TNLLPGTEYVVSVSSVYEQHE 174

>2h41_A Fibronectin; beta sandwich, cell adhesion, structural protein; NMR {Homo sapiens} PDB: 2h45_A Length = 95

 Score = 47.1 bits (112), Expect = 6e-07
 Identities = 14/82 (17%), Positives = 29/82 (35%), Gaps = 4/82 (4%)

Query: 354 IVPNMVKFEDVRATSLTVVLGSEDPSPGNIISYTLWHRRAHEGFPARPTCTLFAPNTRFV 413
           +V       ++ A+S  V   S   +   +  + + +  + EG   +    L +  T   
Sbjct: 7   LVATSESVTEITASSFVV---SWVSASDTVSGFRVEYELSEEGDEPQYL-DLPSTATSVN 62

Query: 414 VTGLCPATEYQFKVVSSNGTTE 435
           +  L P  +Y   V   +   E
Sbjct: 63  IPDLLPGRKYIVNVYQISEDGE 84

>3t1w_A Four-domain fibronectin fragment; human fibronectin, FN type-III domain, oncofetal splice VARI extra-domain B, EIIIB, ED-B, angiogenesis, integrin; 2.40A {Homo sapiens} Length = 375

 Score = 51.0 bits (122), Expect = 8e-07
 Identities = 18/81 (22%), Positives = 31/81 (38%), Gaps = 5/81 (6%)

Query: 356 PNMVKFEDVRATSLTVVLGS-EDPSPGNIISYTLWHRRAHEGFPARPTCTLFAPNTRFVV 414
              + F D+  +S+ +        +   II Y +    A EG P      + +    + V
Sbjct: 99  LTDLSFVDITDSSIGL---RWTPLNSSTIIGYRITVVAAGEGIPIFED-FVDSSVGYYTV 154

Query: 415 TGLCPATEYQFKVVSSNGTTE 435
           TGL P  +Y   V++     E
Sbjct: 155 TGLEPGIDYDISVITLINGGE 175

>3t1w_A Four-domain fibronectin fragment; human fibronectin, FN type-III domain, oncofetal splice VARI extra-domain B, EIIIB, ED-B, angiogenesis, integrin; 2.40A {Homo sapiens} Length = 375

 Score = 50.6 bits (121), Expect = 1e-06
 Identities = 22/80 (27%), Positives = 29/80 (36%), Gaps = 4/80 (5%)

Query: 356 PNMVKFEDVRATSLTVVLGSEDPSPGNIISYTLWHRRAHEGFPARPTCTLFAPNTRFVVT 415
           P  + F D+ A S TV           I  Y + H   H     R    +        +T
Sbjct: 281 PTGIDFSDITANSFTV---HWIAPRATITGYRIRHHPEHFSGRPRED-RVPHSRNSITLT 336

Query: 416 GLCPATEYQFKVVSSNGTTE 435
            L P TEY   +V+ NG  E
Sbjct: 337 NLTPGTEYVVSIVALNGREE 356

>3t1w_A Four-domain fibronectin fragment; human fibronectin, FN type-III domain, oncofetal splice VARI extra-domain B, EIIIB, ED-B, angiogenesis, integrin; 2.40A {Homo sapiens} Length = 375

 Score = 49.0 bits (117), Expect = 3e-06
 Identities = 14/81 (17%), Positives = 31/81 (38%), Gaps = 5/81 (6%)

Query: 356 PNMVKFEDVRATSLTVVLGS-EDPSPGNIISYTLWHRRAHEGFPARPTCTLFAPNTRFVV 414
           P  ++F ++   ++ V   +   P   ++ ++ + +             ++   +   V+
Sbjct: 190 PTDLRFTNIGPDTMRV---TWAPPPSIDLTNFLVRYSPVKNEEDVAEL-SISPSDNAVVL 245

Query: 415 TGLCPATEYQFKVVSSNGTTE 435
           T L P TEY   V S     E
Sbjct: 246 TNLLPGTEYVVSVSSVYEQHE 266

>3t1w_A Four-domain fibronectin fragment; human fibronectin, FN type-III domain, oncofetal splice VARI extra-domain B, EIIIB, ED-B, angiogenesis, integrin; 2.40A {Homo sapiens} Length = 375

 Score = 47.1 bits (112), Expect = 1e-05
 Identities = 16/108 (14%), Positives = 32/108 (29%), Gaps = 3/108 (2%)

Query: 356 PNMVKFEDVRATSLTVVLGSEDPSPGNIISYTLWHRRAHEGFPARPTCTLFAPNTRFVVT 415
           P  +  E    T   + +  E  +  +I  Y +     +          + A  +     
Sbjct: 6   PTNLHLEANPDTG-VLTVSWERSTTPDITGYRITTTPTNGQQGNSLEEVVHADQSSCTFD 64

Query: 416 GLCPATEYQFKVVSSNGTTELGRCEIWFSTGSSRDEVTNCSVIERSQS 463
            L P  EY   V +     E               ++T+ S ++ + S
Sbjct: 65  NLSPGLEYNVSVYTVKDDKESVPISDTIIPEV--PQLTDLSFVDITDS 110

>1wfo_A Sidekick 2; FN3, cell adhesion, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 130

 Score = 47.0 bits (112), Expect = 2e-06
 Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 8/80 (10%)

Query: 356 PNMVKFEDVRATSLTVVLGSEDPSP----GNIISYTLWHRRAHEGFPARPTCTLFAPNTR 411
           P  + F +VR TS+ +      P P    G I++Y + HR             L     +
Sbjct: 31  PMGILFPEVRTTSVRL---IWQP-PAAPNGIILAYQITHRLNTTTANTATVEVLAPSARQ 86

Query: 412 FVVTGLCPATEYQFKVVSSN 431
           +  TGL P + Y F++ +  
Sbjct: 87  YTATGLKPESVYLFRITAQT 106

>3f7q_A Integrin beta-4, GP150; hemidesmosome, cell adhesion, carcinoma, epidermolysis bullosa, alternative splicing, disease mutation, glycoprotein; HET: 1PE PG4; 1.75A {Homo sapiens} PDB: 3f7r_A 3f7p_C 1qg3_A Length = 234

 Score = 48.2 bits (115), Expect = 3e-06
 Identities = 12/77 (15%), Positives = 25/77 (32%), Gaps = 5/77 (6%)

Query: 356 PNMVKFEDVRATSLTVVLGSEDPSPGNIISYTLWHRRAHEGFPARPTCTLFAPNTRFVVT 415
           P     +   +  +     +  P  G  + Y + +    +G        L +      +T
Sbjct: 9   PQNPNAKAAGSRKIHF---NWLPPSGKPMGYRVKYWI--QGDSESEAHLLDSKVPSVELT 63

Query: 416 GLCPATEYQFKVVSSNG 432
            L P  +Y+ KV +   
Sbjct: 64  NLYPYCDYEMKVCAYGA 80

>3k2m_C Monobody HA4; engineered binding protein, antibody mimic, protein-protein SH2 domain, ATP-binding, phosphoprotein; 1.75A {Homo sapiens} PDB: 3uyo_D 1ttf_A 1ttg_A 3rzw_A 1fna_A Length = 101

 Score = 45.1 bits (107), Expect = 4e-06
 Identities = 16/80 (20%), Positives = 31/80 (38%), Gaps = 6/80 (7%)

Query: 355 VPNMVKFEDVRATSLTVVLGSEDP--SPGNIISYTLWHRRAHEGFPARPTCTLFAPNTRF 412
           VP  ++      TSL +   S D   S  ++  Y + +       P +   T+   ++  
Sbjct: 7   VPTKLEVVAATPTSLLI---SWDAPMSSSSVYYYRITYGETGGNSPVQ-EFTVPYSSSTA 62

Query: 413 VVTGLCPATEYQFKVVSSNG 432
            ++GL P  +Y   V +   
Sbjct: 63  TISGLSPGVDYTITVYAWGE 82

>2ed7_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 119

 Score = 45.5 bits (108), Expect = 4e-06
 Identities = 19/80 (23%), Positives = 32/80 (40%), Gaps = 9/80 (11%)

Query: 356 PNMVKFEDVRATSLTVVLGS----EDPSPGNIISYTLWHRRAHEGFPARPTCTLFAPNTR 411
           P  V    V +  + +   S     +   GNI ++T++  R  +    R   T    + +
Sbjct: 21  PRDVVPVLVSSRFVRL---SWRPPAEAK-GNIQTFTVFFSREGDN-RERALNTTQPGSLQ 75

Query: 412 FVVTGLCPATEYQFKVVSSN 431
             V  L P   Y F+VV+ N
Sbjct: 76  LTVGNLKPEAMYTFRVVAYN 95

>2dju_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 106

 Score = 45.0 bits (107), Expect = 4e-06
 Identities = 23/95 (24%), Positives = 37/95 (38%), Gaps = 17/95 (17%)

Query: 339 SNTILPNPSVQGSNVIVPNMVKFEDVRATSLTVVLGSEDPSPGNIISYTLWHRRAHEG-- 396
           S +  P P         P  +   +  ATS  V L  +  +   +  Y + +R A     
Sbjct: 3   SGSSGPKP---------PIDLVVTETTATS--VTLTWDSGNSEPVTYYGIQYRAAGTEGP 51

Query: 397 FPARPTCTLFAPNTRFVVTGLCPATEYQFKVVSSN 431
           F            TR+ + GL P +EY F+V++ N
Sbjct: 52  FQEVDGV----ATTRYSIGGLSPFSEYAFRVLAVN 82

>3t04_D Monobody 7C12; engineered binding protein, antibody mimic, protein-protein SH2 domain, ATP-binding, phosphoprotein; 2.10A {Homo sapiens} Length = 103

 Score = 44.7 bits (106), Expect = 5e-06
 Identities = 16/78 (20%), Positives = 31/78 (39%), Gaps = 1/78 (1%)

Query: 355 VPNMVKFEDVRATSLTVVLGSEDPSPGNIISYTLWHRRAHEGFPARPTCTLFAPNTRFVV 414
           VP  ++  D   TSL +   +   S  N+  Y + +       P +   T+    +   +
Sbjct: 10  VPTKLEVVDATPTSLKISWDAYYSSWQNVKYYRITYGETGGDSPVQ-EFTVPGYYSTATI 68

Query: 415 TGLCPATEYQFKVVSSNG 432
           +GL P  +Y   V + + 
Sbjct: 69  SGLKPGVDYTITVYAYDT 86

>2e7h_A Ephrin type-B receptor 4; FN3 domain, tyrosine- protein kinase receptor HTK, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 109

 Score = 44.8 bits (106), Expect = 5e-06
 Identities = 11/72 (15%), Positives = 24/72 (33%), Gaps = 1/72 (1%)

Query: 356 PNMVKFEDVRATSLTVVLGSEDPSPGNIISYTLWHRRAHEGFPARPTCTLFAPNTRFVVT 415
            + ++      +SL++         G ++ Y + +       P+     L     R  + 
Sbjct: 11  VSDIRVTRSSPSSLSLAWAVPRAPSGAVLDYEVKYHEKGAEGPSS-VRFLKTSENRAELR 69

Query: 416 GLCPATEYQFKV 427
           GL     Y  +V
Sbjct: 70  GLKRGASYLVQV 81

>2kbg_A N-CAM 2, neural cell adhesion molecule 2; fibronectin type III module, beta-sheet sandwich, cell membrane, glycoprotein, immunoglobulin domain; NMR {Homo sapiens} Length = 114

 Score = 44.8 bits (106), Expect = 6e-06
 Identities = 8/75 (10%), Positives = 24/75 (32%), Gaps = 5/75 (6%)

Query: 359 VKFEDVRATSLTVVLGSEDPSPGN--IISYTLWHRRAHEGFPARPTCTLFAPNTRFVVTG 416
           +  +     S  + +       G   I+ Y + +R   +         +       ++  
Sbjct: 14  IHGQPSSGKSFKLSI--TKQDDGGAPILEYIVKYRSKDKEDQ-WLEKKVQGNKDHIILEH 70

Query: 417 LCPATEYQFKVVSSN 431
           L     Y+ ++ ++N
Sbjct: 71  LQWTMGYEVQITAAN 85

>1x4x_A Fibronectin type-III domain containing protein 3A; FN3, immunoglobulin-like beta- sandwich fold, KIAA0970, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 106

 Score = 44.6 bits (106), Expect = 7e-06
 Identities = 15/79 (18%), Positives = 23/79 (29%), Gaps = 10/79 (12%)

Query: 356 PNMVKFEDVRATSLTVVLGS-EDPSPGN--IISYTLWHRRAHEGFPARPTCTLFAPNTRF 412
               +     AT   V   + E P      +  Y L                   P   +
Sbjct: 11  CKPPQVTCRSATCAQV---NWEVPLSNGTDVTEYRLEWGGVEGSM----QICYCGPGLSY 63

Query: 413 VVTGLCPATEYQFKVVSSN 431
            + GL PAT Y  +V + +
Sbjct: 64  EIKGLSPATTYYCRVQALS 82

>2e3v_A Neural cell adhesion molecule 1, 140 kDa isoform; NCAM, N-CAM 1, NCAM-120, CD56 antigen, membra protein, glycoprotein, structural genomics, NPPSFA; HET: PGE BTB; 1.95A {Homo sapiens} Length = 122

 Score = 44.8 bits (106), Expect = 7e-06
 Identities = 16/74 (21%), Positives = 25/74 (33%), Gaps = 5/74 (6%)

Query: 364 VRATSLTVVLGSEDP-SPGN--IISYTLWHRRAHEGFPARPTCTLFAP--NTRFVVTGLC 418
           V   S T  +  ++P + G   I+ Y    R   E                    + GL 
Sbjct: 16  VEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLK 75

Query: 419 PATEYQFKVVSSNG 432
           P T Y  ++ + NG
Sbjct: 76  PETTYAVRLAALNG 89

>1cfb_A Drosophila neuroglian; neural adhesion molecule; HET: NAG; 2.00A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1 Length = 205

 Score = 46.6 bits (111), Expect = 8e-06
 Identities = 16/86 (18%), Positives = 26/86 (30%), Gaps = 6/86 (6%)

Query: 348 VQGSNVIVPNMVKFEDVRATSLTVVLGSEDPSPGN--IISYTLWHRRAHEGFPARPTCTL 405
           VQ     VPN  K   +   +    +  E        I+ YT+    +            
Sbjct: 2   VQD----VPNAPKLTGITCQADKAEIHWEQQGDNRSPILHYTIQFNTSFTPASWDAAYEK 57

Query: 406 FAPNTRFVVTGLCPATEYQFKVVSSN 431
                   V  + P   Y F+V++ N
Sbjct: 58  VPNTDSSFVVQMSPWANYTFRVIAFN 83

>2haz_A N-CAM 1, neural cell adhesion molecule 1; fibronectin type III repeat, FN1, beta sandwich; 1.70A {Homo sapiens} SCOP: b.1.2.1 Length = 105

 Score = 44.3 bits (105), Expect = 8e-06
 Identities = 19/88 (21%), Positives = 33/88 (37%), Gaps = 5/88 (5%)

Query: 350 GSNVIVPNMVKFEDVRATSLTVVLGSEDP-SPGN--IISYTLWHRRAHEGFPARPTCTLF 406
           GS++  P+    + V   S T  +  ++P + G   I+ Y    R   E           
Sbjct: 1   GSHMDTPSSPSIDQVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAK 60

Query: 407 APN--TRFVVTGLCPATEYQFKVVSSNG 432
             +      + GL P T Y  ++ + NG
Sbjct: 61  EASMEGIVTIVGLKPETTYAVRLAALNG 88

>1uey_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold, NG-CAM related cell adhesion molecule, fibronectin type III domain, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 127

 Score = 44.7 bits (106), Expect = 1e-05
 Identities = 15/78 (19%), Positives = 24/78 (30%), Gaps = 4/78 (5%)

Query: 356 PNMVKFEDVRATSLTVVLGSEDPSPGN--IISYTLWHRRAHEGFPARPTCTLFAPNTRFV 413
           P  ++  D    S  V L        N  I  + + +  A          T  +      
Sbjct: 20  PFDLELTDQLDKS--VQLSWTPGDDNNSPITKFIIEYEDAMHKPGLWHHQTEVSGTQTTA 77

Query: 414 VTGLCPATEYQFKVVSSN 431
              L P   Y F+V++ N
Sbjct: 78  QLNLSPYVNYSFRVMAVN 95

>2db8_A Tripartite motif protein 9, isoform 2; ring finger protein 91, TRIM9, KIAA0282, RNF91, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 44.0 bits (104), Expect = 1e-05
 Identities = 13/71 (18%), Positives = 18/71 (25%), Gaps = 7/71 (9%)

Query: 363 DVRATSLTVV--LGSEDPSPGNIISYTLWHRRAHEGFPARPTCTLFAPNTRFVVTGLCPA 420
                S T+          P     Y L     + G             T   V GL   
Sbjct: 21  CTHNNSATLSWKQPPLSTVP--ADGYILELDDGNGGQFREVYVG---KETMCTVDGLHFN 75

Query: 421 TEYQFKVVSSN 431
           + Y  +V + N
Sbjct: 76  STYNARVKAFN 86

>1x3d_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 118

 Score = 43.9 bits (104), Expect = 1e-05
 Identities = 16/79 (20%), Positives = 30/79 (37%), Gaps = 6/79 (7%)

Query: 355 VPNMVKFEDVRATSLTVV--LGSEDPSPGNIISYTLWHRRAHEGFPARPTCTLFAPNTRF 412
           +PN  +  +    SLT+     S++ S   I ++ L                      +F
Sbjct: 20  IPNPPRIANRTKNSLTLQWKAPSDNGSK--IQNFVLEWDEGKGNGEFCQCYM--GSQKQF 75

Query: 413 VVTGLCPATEYQFKVVSSN 431
            +T L PA   +F++ + N
Sbjct: 76  KITKLSPAMGCKFRLSARN 94

>3p4l_A Neogenin; iron homeostasis, hemojuvelin receptor, FNIII domain, fibron type III, cell adhesion; 1.80A {Homo sapiens} PDB: 1x5k_A Length = 211

 Score = 45.6 bits (108), Expect = 2e-05
 Identities = 15/81 (18%), Positives = 29/81 (35%), Gaps = 6/81 (7%)

Query: 356 PNMVKFEDVRATSLTV----VLGSEDPSPGNIISYTLWHRRAHEGFPARPTCTLFAPNTR 411
           P  V+   +   ++ +        +     +   YT+  +               A    
Sbjct: 8   PVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKNAN--ATTLS 65

Query: 412 FVVTGLCPATEYQFKVVSSNG 432
           ++VTGL P T Y+F V+ + G
Sbjct: 66  YLVTGLKPNTLYEFSVMVTKG 86

>3p4l_A Neogenin; iron homeostasis, hemojuvelin receptor, FNIII domain, fibron type III, cell adhesion; 1.80A {Homo sapiens} PDB: 1x5k_A Length = 211

 Score = 44.4 bits (105), Expect = 5e-05
 Identities = 15/79 (18%), Positives = 25/79 (31%), Gaps = 3/79 (3%)

Query: 356 PNMVKFEDVRATSLTVVLGSEDPSP--GNIISYTLWHRRAHEGFPARPTCTLFAPN-TRF 412
           P  V          T+++  + PS   G I  Y +++                  N    
Sbjct: 109 PKDVTVVSKEGKPKTIIVNWQPPSEANGKITGYIIYYSTDVNAEIHDWVIEPVVGNRLTH 168

Query: 413 VVTGLCPATEYQFKVVSSN 431
            +  L   T Y FK+ + N
Sbjct: 169 QIQELTLDTPYYFKIQARN 187

>2cui_A Tenascin-X; fibronectin type III domain, extracellular matirx, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 112

 Score = 43.4 bits (102), Expect = 2e-05
 Identities = 13/87 (14%), Positives = 24/87 (27%), Gaps = 10/87 (11%)

Query: 356 PNMVKFEDVRATSLTVVLGSEDPSPGNIISYTLWHRRAHEGFPARPTC-------TLFAP 408
            + +   DV  +SL +   + +  PG   S+ L                       +   
Sbjct: 12  LSQLSVTDVTTSSLRL---NWEAPPGAFDSFLLRFGVPSPSTLEPHPRPLLQRELMVPGT 68

Query: 409 NTRFVVTGLCPATEYQFKVVSSNGTTE 435
               V+  L   T Y   +    G  +
Sbjct: 69  RHSAVLRDLRSGTLYSLTLYGLRGPHK 95

>2dn7_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 107

 Score = 43.2 bits (102), Expect = 2e-05
 Identities = 19/79 (24%), Positives = 29/79 (36%), Gaps = 4/79 (5%)

Query: 355 VPN--MVKFEDVRATSLTVVLGSEDPSPGNIISYTLWHRRAHEGFPARPTCTLFAPNTRF 412
            P    +        +  +        PG ++ Y L + RA E  P   T      +  F
Sbjct: 7   GPGRPTMMISTTAMNTALLQWHPPKELPGELLGYRLQYCRADEARPN--TIDFGKDDQHF 64

Query: 413 VVTGLCPATEYQFKVVSSN 431
            VTGL   T Y F++ + N
Sbjct: 65  TVTGLHKGTTYIFRLAAKN 83

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731

 Score = 47.1 bits (111), Expect = 2e-05
 Identities = 15/84 (17%), Positives = 25/84 (29%), Gaps = 6/84 (7%)

Query: 355 VPNMVKFEDVRATSLTVVLGSEDPSPGNIISYTLWHRRAHEGFPARP------TCTLFAP 408
           VP            + +       + G I  Y + ++      P           +    
Sbjct: 465 VPTESIQGSTFEEKIFLQWREPTQTYGVITLYEITYKAVSSFDPEIDLSNQSGRVSKLGN 524

Query: 409 NTRFVVTGLCPATEYQFKVVSSNG 432
            T F+  GL P T Y F + +S  
Sbjct: 525 ETHFLFFGLYPGTTYSFTIRASTA 548

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731

 Score = 44.8 bits (105), Expect = 9e-05
 Identities = 16/77 (20%), Positives = 31/77 (40%), Gaps = 5/77 (6%)

Query: 356 PNMVKFEDVRATSLTVVLGSEDPSP-GNIISYTLWHRRAHEGFPARPTCTLFAPNTRFVV 414
               +   V AT L + L +   +  G I++  + +  A   +  R        +T + +
Sbjct: 265 IAPPQLASVGATYLWIQLNANSINGDGPIVAREVEYCTASGSWNDRQP----VDSTSYKI 320

Query: 415 TGLCPATEYQFKVVSSN 431
             L P TEY+  V+ + 
Sbjct: 321 GHLDPDTEYEISVLLTR 337

>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY acidic protein fold, fibronectin type III fold, hormone- growth factor complex; NMR {Homo sapiens} Length = 680

 Score = 46.9 bits (110), Expect = 2e-05
 Identities = 20/116 (17%), Positives = 42/116 (36%), Gaps = 11/116 (9%)

Query: 321 PEVQKLCACAVESLDKMISNTILPNPSVQGSNVIVPNMVKFEDVRATSLTVVLGSEDPSP 380
             V+K C+       ++        P            ++F ++++  L V   S+    
Sbjct: 135 SGVKKCCSNGCGHTCQVPKTLYKGVPLKP------RKELRFTELQSGQLEVKWSSKFNIS 188

Query: 381 GNIISYTLWHRRAHEGFPARPTCTLF-----APNTRFVVTGLCPATEYQFKVVSSN 431
              + Y +  R  +   P+    T +       + R  +T + P+  YQF+V + N
Sbjct: 189 IEPVIYVVQRRWNYGIHPSEDDATHWQTVAQTTDERVQLTDIRPSRWYQFRVAAVN 244

>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY acidic protein fold, fibronectin type III fold, hormone- growth factor complex; NMR {Homo sapiens} Length = 680

 Score = 44.6 bits (104), Expect = 1e-04
 Identities = 16/143 (11%), Positives = 39/143 (27%), Gaps = 5/143 (3%)

Query: 340 NTILPNPSVQGSNVIVPNMVKFEDVRATSLTVVLGSEDPSPGNIISYTLWHRR---AHEG 396
             I      Q      P  V     +   L V +  +      +  Y +       AH  
Sbjct: 389 GGIQTQLPFQRRRPTRPLEVGAPFYQDGQLQVKVYWKKTEDPTVNRYHVRWFPEACAHNR 448

Query: 397 FPARPTCTLFAPNTRFVVTGLCPATEYQFKVVSSNGTTELGRCEIWFSTGSSRD--EVTN 454
                  +        ++  L  + +Y+  V      +      ++F+T         ++
Sbjct: 449 TTGSEASSGMTHENYIILQDLSFSCKYKVTVQPIRPKSHSKAEAVFFTTPPCSALKGKSH 508

Query: 455 CSVIERSQSPATNCSSLSNPSSV 477
             +    ++       L+ P ++
Sbjct: 509 KPIGCLGEAGHVLSKVLAKPENL 531

>2edb_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 116

 Score = 43.2 bits (102), Expect = 2e-05
 Identities = 8/76 (10%), Positives = 23/76 (30%), Gaps = 4/76 (5%)

Query: 356 PNMVKFEDVRATSLTVVLGSEDPSPGNIISYTLWHRRAHEGFPARPTCTLFAPNTRFVVT 415
           P+ +         + +           +  Y + +     G P   T  + +    + + 
Sbjct: 21  PSSLHVRPQ-TNCIIMSWTPPLNPNIVVRGYIIGYG---VGSPYAETVRVDSKQRYYSIE 76

Query: 416 GLCPATEYQFKVVSSN 431
            L  ++ Y   + + N
Sbjct: 77  RLESSSHYVISLKAFN 92

>2ibg_A CG9211-PA, GH03927P; IHOG, fibronectin type III, protein binding; 2.20A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1 PDB: 2ibb_A Length = 214

 Score = 44.8 bits (106), Expect = 3e-05
 Identities = 13/89 (14%), Positives = 26/89 (29%), Gaps = 15/89 (16%)

Query: 356 PNMVKFEDVRATSLTVV--LGSEDPSPGNIISYTL----------WHRRAHEGFPARPTC 403
           P       +   S+ +   +   D  P  I+ + +          W          +P  
Sbjct: 5   PTPPNVTRLSDESVMLRWMVPRNDGLP--IVIFKVQYRMVGKRKNWQTTNDNIPYGKPKW 62

Query: 404 TLFAPN-TRFVVTGLCPATEYQFKVVSSN 431
                      VT L P   Y+F++++  
Sbjct: 63  NSELGKSFTASVTDLKPQHTYRFRILAVY 91

>2yuw_A Myosin binding protein C, SLOW type; fibronectin III domain, SLOW- type protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 42.7 bits (101), Expect = 3e-05
 Identities = 14/79 (17%), Positives = 29/79 (36%), Gaps = 6/79 (7%)

Query: 356 PNMVKFEDVRATSLTVV-LGSEDPSPGNIISYTLWHRR--AHEGFPARPTCTLFAPNTRF 412
           P ++  + V  T++T+     +      +  Y L +      +   A          T+F
Sbjct: 11  PTLLTVDSVTDTTVTMRWRPPDHIGAAGLDGYVLEYCFEGTEDWIVANKDLI---DKTKF 67

Query: 413 VVTGLCPATEYQFKVVSSN 431
            +TGL    +   +V + N
Sbjct: 68  TITGLPTDAKIFVRVKAVN 86

>1x5x_A Fibronectin type-III domain containing protein 3A; structural genomics, KIAA0970, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 109

 Score = 42.7 bits (101), Expect = 3e-05
 Identities = 17/77 (22%), Positives = 28/77 (36%), Gaps = 3/77 (3%)

Query: 356 PNMVKFEDVRATSLTVV-LGSEDPSPGNIISYTLWHRRAHEGFPARPTCTLFAPNTRFVV 414
           P          T L++             ISY L       G+  +P       +  + V
Sbjct: 11  PASPVLTKAGITWLSLQWSKPSGTPSDEGISYILEMEEETSGYGFKPKYDG--EDLAYTV 68

Query: 415 TGLCPATEYQFKVVSSN 431
             L  +T+Y+FKV++ N
Sbjct: 69  KNLRRSTKYKFKVIAYN 85

>1x5l_A Ephrin type-A receptor 8; FN3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 111

 Score = 42.7 bits (101), Expect = 3e-05
 Identities = 19/79 (24%), Positives = 33/79 (41%), Gaps = 8/79 (10%)

Query: 356 PNMVKFEDVRATSLTVVLGSEDP---SPGNIISYTLWHRRAHEGFPARPTCTLFAPNTRF 412
             +++ E    TS+++            G I+ Y + +    +   +    TL A  TR 
Sbjct: 14  VVVIRQERAGQTSVSL---LWQEPEQPNGIILEYEIKYYEKDKEMQS--YSTLKAVTTRA 68

Query: 413 VVTGLCPATEYQFKVVSSN 431
            V+GL P T Y F+V +  
Sbjct: 69  TVSGLKPGTRYVFQVRART 87

>1wfn_A Sidekick 2; FN3, cell adhesion, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 119

 Score = 42.8 bits (101), Expect = 4e-05
 Identities = 17/76 (22%), Positives = 26/76 (34%), Gaps = 1/76 (1%)

Query: 356 PNMVKFEDVRATSLTVVLGSEDPSPGNIISYTLWHRRAHEGFPARPTCTLFAPNTRFVVT 415
              + F ++  TSL V         G +  Y +     +     R T  L      + VT
Sbjct: 21  VGHLSFSEILDTSLKVSWQEPGEKNGILTGYRISWEEYNRTNT-RVTHYLPNVTLEYRVT 79

Query: 416 GLCPATEYQFKVVSSN 431
           GL   T Y  +V +  
Sbjct: 80  GLTALTTYTIEVAAMT 95

>2vkw_A Neural cell adhesion molecule 1,140 kDa isoform; adhesion receptor; 2.3A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 2vkx_A 1lwr_A Length = 209

 Score = 44.0 bits (104), Expect = 5e-05
 Identities = 16/76 (21%), Positives = 29/76 (38%), Gaps = 2/76 (2%)

Query: 356 PNMVKFEDVRATSLTVVLGSEDPSPGNIISYTLWHRRAHEGFPARPTCTLFAPNTRFVVT 415
           P +         S+ V L  +D     I  Y + +R     +  +P   L + +   ++ 
Sbjct: 113 PKLEGQMGEDGNSIKVNLIKQDDGGSPIRHYLVRYRALSSEW--KPEIRLPSGSDHVMLK 170

Query: 416 GLCPATEYQFKVVSSN 431
            L    EY+  VV+ N
Sbjct: 171 SLDWNAEYEVYVVAEN 186

>2dkm_A Collagen alpha-1(XX) chain; FN3 domain, KIAA1510, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 41.7 bits (98), Expect = 6e-05
 Identities = 17/93 (18%), Positives = 29/93 (31%), Gaps = 5/93 (5%)

Query: 356 PNMVKFEDVRATSLTVVLGSEDPSPGNIISYTLWHRRAHEGFPARPTCTLFAPNTRFVVT 415
           P  +    V   ++ +   +  PS G    Y +    A           +       ++ 
Sbjct: 12  PRALTLAAVTPRTVHL---TWQPSAG-ATHYLVRCSPASPKGEEEER-EVQVGRPEVLLD 66

Query: 416 GLCPATEYQFKVVSSNGTTELGRCEIWFSTGSS 448
           GL P  +Y+  V S  G        I   T +S
Sbjct: 67  GLEPGRDYEVSVQSLRGPEGSEARGIRARTPTS 99

>2djs_A Ephrin type-B receptor 1; tyrosine-protein kinase receptor EPH-2, NET, HEK6, ELK, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 108

 Score = 41.7 bits (98), Expect = 7e-05
 Identities = 12/77 (15%), Positives = 24/77 (31%), Gaps = 3/77 (3%)

Query: 355 VPNMVKFEDVRATSLTVVLGSEDPSPGNIISYTLWHRRAHEGFPARPTCTLFAPNTRFVV 414
           VP  +        S+T+     +   G I+ Y + +           +    +      +
Sbjct: 11  VPI-MHQVSATMRSITLSWPQPEQPNGIILDYEIRYYEKEHNEFN--SSMARSQTNTARI 67

Query: 415 TGLCPATEYQFKVVSSN 431
            GL P   Y  +V +  
Sbjct: 68  DGLRPGMVYVVQVRART 84

>1wfu_A Unnamed protein product; FN3 domain, similar to 1700007B22RIK protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.2.1 Length = 120

 Score = 41.9 bits (98), Expect = 8e-05
 Identities = 15/78 (19%), Positives = 26/78 (33%), Gaps = 2/78 (2%)

Query: 356 PNMVKFEDVRATSLTVV-LGSEDPSPGNIISYTLWHRRAHEGFPARPTCTLFAP-NTRFV 413
           P+      V   S+ +     +           L      E         ++    TR V
Sbjct: 19  PHPPVVGKVTHHSIELYWDLEQKEKRQGPQEQWLRFSIEEEDPKMHSYGVIYTGYATRHV 78

Query: 414 VTGLCPATEYQFKVVSSN 431
           V GL P T Y+F++  ++
Sbjct: 79  VEGLEPRTLYKFRLKVTS 96

>3lpw_A A77-A78 domain from titin; intracellular FNIII-tandem, structural protein; 1.65A {Homo sapiens} Length = 197

 Score = 43.1 bits (102), Expect = 8e-05
 Identities = 16/77 (20%), Positives = 29/77 (37%), Gaps = 3/77 (3%)

Query: 356 PNMVKFEDVRATSLTVV-LGSEDPSPGNIISYTLWHRRAHEGFPARPTCTLFAPNTRFVV 414
           P  +K ++V  TS+T+            I +Y +  R +     +          T + V
Sbjct: 9   PQDLKVKEVTKTSVTLTWDPPLLDGGSKIKNYIVEKRESTRKAYSTVATN--CHKTSWKV 66

Query: 415 TGLCPATEYQFKVVSSN 431
             L     Y F+V++ N
Sbjct: 67  DQLQEGCSYYFRVLAEN 83

>2ic2_A CG9211-PA, GH03927P; IHOG, hedgehog, fibronectin type III, protein binding; HET: MSE; 1.30A {Drosophila melanogaster} SCOP: b.1.2.1 Length = 115

 Score = 41.1 bits (96), Expect = 1e-04
 Identities = 13/89 (14%), Positives = 30/89 (33%), Gaps = 15/89 (16%)

Query: 356 PNMVKFEDVRATSLTV--VLGSEDPSPGNIISYTLWHRR---------AHEGFPARPTCT 404
           P       +   S+ +  ++   D  P  I+ + + +R           ++  P      
Sbjct: 6   PTPPNVTRLSDESVMLRWMVPRNDGLP--IVIFKVQYRMVGKRKNWQTTNDNIPYGKPKW 63

Query: 405 LFAP--NTRFVVTGLCPATEYQFKVVSSN 431
                 +    VT L P   Y+F++++  
Sbjct: 64  NSELGKSFTASVTDLKPQHTYRFRILAVY 92

>2dlh_A Receptor-type tyrosine-protein phosphatase delta; protein-tyrosine phosphatase delta, R-PTP-delta, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 121

 Score = 41.2 bits (97), Expect = 1e-04
 Identities = 13/78 (16%), Positives = 26/78 (33%)

Query: 355 VPNMVKFEDVRATSLTVVLGSEDPSPGNIISYTLWHRRAHEGFPARPTCTLFAPNTRFVV 414
            P  V+   + +T++ V     +   G I  Y +++                A +    +
Sbjct: 21  APRDVQARMLSSTTILVQWKEPEEPNGQIQGYRVYYTMDPTQHVNNWMKHNVADSQITTI 80

Query: 415 TGLCPATEYQFKVVSSNG 432
             L P   Y  KV++   
Sbjct: 81  GNLVPQKTYSVKVLAFTS 98

>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane, disulfide bond, glycoprotein, immunoglobulin domain, membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A {Homo sapiens} Length = 589

 Score = 44.2 bits (104), Expect = 1e-04
 Identities = 35/231 (15%), Positives = 66/231 (28%), Gaps = 32/231 (13%)

Query: 356 PNMVKFEDVRATSLTVVLGSEDPSPGN--IISYTLWHRRAHEGFPARPTCTLFAPN-TRF 412
           P+ +   +    S  + L   +PS  +  I+ Y + +R       ++      A   + F
Sbjct: 202 PHNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQYRTKDASTWSQIPPEDTASTRSSF 261

Query: 413 VVTGLCPATEYQFKVVSSNGTTELGRC-------EIWFSTGSSRDEVTNCSVIERSQSPA 465
            V  L P TEY F++       E G+        E    T   R         +   S  
Sbjct: 262 TVQDLKPFTEYVFRIRCMK---EDGKGYWSDWSEEASGITYEDRPSKAPSFWYKIDPSHT 318

Query: 466 TNCSSLSNPSSVEDETNNVTPDRDPNDAQVNNYYTYSKETDKIASTNLCDDAIDCTVLGR 525
               ++     +  +T    P  + N  ++ +Y             N   +A   TV   
Sbjct: 319 QGYRTV----QLVWKT---LPPFEAN-GKILDYEVTLTRWKS-HLQNYTVNATKLTVNLT 369

Query: 526 GTTPADAVSLLDEERANNIDGSMPDSHV----QKLESKHPPEGRIIEEMST 572
                  +         N+ G    + +       ++ HP           
Sbjct: 370 NDRYLATL------TVRNLVGKSDAAVLTIPACDFQATHPVMDLKAFPKDN 414

>1x4z_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes (CDON)binding...; fibronectin type III, FN3; NMR {Mus musculus} SCOP: b.1.2.1 Length = 121

 Score = 41.2 bits (97), Expect = 1e-04
 Identities = 16/79 (20%), Positives = 29/79 (36%), Gaps = 5/79 (6%)

Query: 356 PNMVKFEDVRATSLTVVLGSEDPSPGN--IISYTLWHRRAHE-GFPARPTCTLFAPNTRF 412
           P+         TS+ V         G   I S+ + +++  + G     T  +       
Sbjct: 21  PDRPTISTASETSVYVTW--IPRGNGGFPIQSFRVEYKKLKKVGDWILATSAIPPSRLSV 78

Query: 413 VVTGLCPATEYQFKVVSSN 431
            +TGL     Y+F+V + N
Sbjct: 79  EITGLEKGISYKFRVRALN 97

>1x5y_A Myosin binding protein C, fast-type; fast MYBP-C, fibronectin type III domain containing protein, cytoskeleton, muscle contraction; NMR {Mus musculus} SCOP: b.1.2.1 Length = 111

 Score = 40.8 bits (96), Expect = 1e-04
 Identities = 17/77 (22%), Positives = 23/77 (29%), Gaps = 2/77 (2%)

Query: 356 PNMVKFEDVRATSLTVV-LGSEDPSPGNIISYTLWHRRAHEGFPARPTCTLFAPNTRFVV 414
           P  +  EDV  T+ T+     +    G I  Y +            P          F V
Sbjct: 12  PQHLTVEDVTDTTTTLKWRPPDRIGAGGIDGYLV-EYCLEGSEEWVPANKEPVERCGFTV 70

Query: 415 TGLCPATEYQFKVVSSN 431
             L       F+VV  N
Sbjct: 71  KDLPTGARILFRVVGVN 87

>1x5a_A Ephrin type-A receptor 1; tyrosine-protein kinase receptor, ESK, fibronectin type III (FN3) domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.1.2.1 Length = 107

 Score = 40.5 bits (95), Expect = 1e-04
 Identities = 16/74 (21%), Positives = 25/74 (33%), Gaps = 7/74 (9%)

Query: 359 VKFEDVRATSLTVVLGSEDP-SPGNIISYTLWHRRAHEGFPARPTCTLFAPNTRFVVTGL 417
           +K        L +      P +PG  +SY L      E +             R ++T L
Sbjct: 16  LKLVKKEPRQLELTWAGSRPRNPGGNLSYELHVLNQDEEWHQMVL------EPRVLLTKL 69

Query: 418 CPATEYQFKVVSSN 431
            P T Y  +V +  
Sbjct: 70  QPDTTYIVRVRTLT 83

>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB: 2x10_A* 2x11_A 3mx0_A* 3mbw_A* Length = 536

 Score = 44.0 bits (103), Expect = 2e-04
 Identities = 15/76 (19%), Positives = 25/76 (32%), Gaps = 3/76 (3%)

Query: 356 PNMVKFEDVRATSLTVVLGSEDPSPGNIISYTLWHRRAHEGFPARPTCTLFAPNTRFVVT 415
           P  V+ E    TSL+V      P    +  Y + +R+  +                  + 
Sbjct: 444 PPKVRLEGRSTTSLSVSWSIPPPQQSRVWKYEVTYRKKGDSNSYN---VRRTEGFSVTLD 500

Query: 416 GLCPATEYQFKVVSSN 431
            L P T Y  +V +  
Sbjct: 501 DLAPDTTYLVQVQALT 516

>2ee2_A Contactin-1; neural cell surface protein F3, glycoprotein GP135, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 119

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 15/78 (19%), Positives = 31/78 (39%), Gaps = 4/78 (5%)

Query: 356 PNMVKFEDVRATSLTVVLGS-EDPSPGNIISYTLWHRRAHEGFPARPTCTLFAPNTRFVV 414
           P  V  + + ++ ++V     E      + SY + +  AH+   A     + +      +
Sbjct: 22  PTEVGVKVLSSSEISV---HWEHVLEKIVESYQIRYWAAHDKEEAANRVQVTSQEYSARL 78

Query: 415 TGLCPATEYQFKVVSSNG 432
             L P T+Y  +V + N 
Sbjct: 79  ENLLPDTQYFIEVGACNS 96

>1x5j_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 113

 Score = 40.2 bits (94), Expect = 3e-04
 Identities = 15/82 (18%), Positives = 29/82 (35%), Gaps = 6/82 (7%)

Query: 355 VPNMVKFEDVRATSLTV----VLGSEDPSPGNIISYTLWHRRAHEGFPARPTCTLFAPNT 410
            P  V+   +   ++ +        +     +   YT+  +               A   
Sbjct: 11  PPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANT--KYKNANATTL 68

Query: 411 RFVVTGLCPATEYQFKVVSSNG 432
            ++VTGL P T Y+F V+ + G
Sbjct: 69  SYLVTGLKPNTLYEFSVMVTKG 90

>1wf5_A Sidekick 2 protein; FNIII domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 121

 Score = 40.4 bits (95), Expect = 3e-04
 Identities = 18/76 (23%), Positives = 29/76 (38%), Gaps = 5/76 (6%)

Query: 358 MVKFEDVRATSLTVVLGSEDPSPGN--IISYTLWHRRAHEGFPARPTCTLFAPNTRFVVT 415
           +     V   +  + L    P  GN  +I Y L     +  +      ++    T   V 
Sbjct: 25  VATLSTVERRA--INLTWTKPFDGNSPLIRYILEMSENNAPWTVLLA-SVDPKATSVTVK 81

Query: 416 GLCPATEYQFKVVSSN 431
           GL PA  YQF++ + N
Sbjct: 82  GLVPARSYQFRLCAVN 97

>1wis_A KIAA1514 protein; FNIII domain, sidekick-2, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 124

 Score = 40.4 bits (95), Expect = 3e-04
 Identities = 14/82 (17%), Positives = 23/82 (28%), Gaps = 8/82 (9%)

Query: 356 PNMVKFEDVRATSLTVVLGSEDPSPGN--IISYTLWHRRAHEGFPAR----PTCTLFAPN 409
           P  +   ++   S  V L       G   I  + +  +    G           +     
Sbjct: 21  PTNLGISNIGPRS--VTLQFRPGYDGKTSISRWLVEAQVGVVGEGEEWLLIHQLSNEPDA 78

Query: 410 TRFVVTGLCPATEYQFKVVSSN 431
               V  L P T Y F++   N
Sbjct: 79  RSMEVPDLNPFTCYSFRMRQVN 100

>2edd_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 123

 Score = 39.9 bits (93), Expect = 4e-04
 Identities = 14/82 (17%), Positives = 29/82 (35%), Gaps = 6/82 (7%)

Query: 355 VPNMVKFEDVRATSLTV----VLGSEDPSPGNIISYTLWHRRAHEGFPARPTCTLFAPNT 410
            P  V+   +   ++ V        ++     +  YT+  R +        +      + 
Sbjct: 21  PPVGVQAVALTHDAVRVSWADNSVPKNQKTSEVRLYTVRWRTSFSASAKYKSED--TTSL 78

Query: 411 RFVVTGLCPATEYQFKVVSSNG 432
            +  TGL P T Y+F V+ +  
Sbjct: 79  SYTATGLKPNTMYEFSVMVTKN 100

>1x5g_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 116

 Score = 39.6 bits (93), Expect = 4e-04
 Identities = 20/79 (25%), Positives = 33/79 (41%), Gaps = 10/79 (12%)

Query: 356 PNMVKFEDVRATSLTVVLGS-EDPSPGN--IISYTLWHRRAHEGFPARPTCTLFAPNTRF 412
              ++      TS+TV   + E P  GN  I +Y L++              +   +  +
Sbjct: 21  APNLRAYAASPTSITV---TWETPVSGNGEIQNYKLYYMEKGTD----KEQDVDVSSHSY 73

Query: 413 VVTGLCPATEYQFKVVSSN 431
            + GL   TEY F+VV+ N
Sbjct: 74  TINGLKKYTEYSFRVVAYN 92

>2ed8_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 106

 Score = 39.2 bits (92), Expect = 4e-04
 Identities = 13/79 (16%), Positives = 26/79 (32%), Gaps = 10/79 (12%)

Query: 356 PNMVKFEDVRATSLTVVLGSEDPSP---GNIISYTLWHRRAHEGFPARPTCTLFAPNTRF 412
              ++      TS+ +   + +P     G +  Y L+      G               +
Sbjct: 11  VENLQAVSTSPTSILI---TWEPPAYANGPVQGYRLFCTEVSTGKEQNIE----VDGLSY 63

Query: 413 VVTGLCPATEYQFKVVSSN 431
            + GL   TEY  + ++ N
Sbjct: 64  KLEGLKKFTEYSLRFLAYN 82

>1x5i_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 126

 Score = 39.7 bits (93), Expect = 5e-04
 Identities = 15/79 (18%), Positives = 29/79 (36%), Gaps = 5/79 (6%)

Query: 355 VPNMVKFEDVRATSLTVVLGSEDPSPGN--IISYTLWHRRAHEGFPARPTCTLFAPNTRF 412
           VP +     VR    ++V+    P   N  +  Y + +     G P   T  +      +
Sbjct: 27  VPEVPSSLHVRPLVTSIVVSWTPPENQNIVVRGYAIGYG---IGSPHAQTIKVDYKQRYY 83

Query: 413 VVTGLCPATEYQFKVVSSN 431
            +  L P++ Y   + + N
Sbjct: 84  TIENLDPSSHYVITLKAFN 102

>2edy_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 103

 Score = 38.4 bits (90), Expect = 7e-04
 Identities = 21/82 (25%), Positives = 33/82 (40%), Gaps = 12/82 (14%)

Query: 356 PNMVKFEDVRATSLTVVLGSEDPSP-----GNIISYTLWHRRAHEGFPARPTCTLFAPNT 410
           P  +    +  ++  +   + DP       G IISYT+  R  +     +        +T
Sbjct: 12  PQNLHVTGLTTSTTEL---AWDPPVLAERNGRIISYTVVFRDINS----QQELQNITTDT 64

Query: 411 RFVVTGLCPATEYQFKVVSSNG 432
           RF +TGL P T Y  KV +   
Sbjct: 65  RFTLTGLKPDTTYDIKVRAWTS 86

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215

 Score = 40.6 bits (95), Expect = 8e-04
 Identities = 16/82 (19%), Positives = 27/82 (32%), Gaps = 5/82 (6%)

Query: 355 VPNMVKFEDVRATSLTVVLGSEDPSP-GN--IISYTLWHRRAHEG--FPARPTCTLFAPN 409
            P+    + V   S T  +  ++P   G   I+ Y    R   E             +  
Sbjct: 113 TPSSPSIDQVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASME 172

Query: 410 TRFVVTGLCPATEYQFKVVSSN 431
               + GL P T Y  ++ + N
Sbjct: 173 GIVTIVGLKPETTYAVRLAALN 194

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	746
d2cuma1	93	b.1.2.1 (A:7-99) Tenascin-X {Human (Homo sapiens)	1e-07
d1tdqa2	92	b.1.2.1 (A:94-185) Tenascin {Rat (Rattus norvegicu	2e-07
d1fnfa3	89	b.1.2.1 (A:1327-1415) Fibronectin, different Fn3 m	3e-07
d1qr4a2	88	b.1.2.1 (A:88-175) Tenascin {Chicken (Gallus gallu	9e-07
d1x5la1	98	b.1.2.1 (A:8-105) Ephrin type-A receptor 8 {Human	9e-07
d1fnaa_	91	b.1.2.1 (A:) Fibronectin, different Fn3 modules {H	2e-06
d1tdqa1	93	b.1.2.1 (A:1-93) Tenascin {Rat (Rattus norvegicus)	3e-06
d1wfoa1	117	b.1.2.1 (A:8-124) Sidekick 2 {Human (Homo sapiens)	4e-06
d1x5za1	102	b.1.2.1 (A:8-109) Receptor-type tyrosine-protein p	5e-06
d1x5xa1	96	b.1.2.1 (A:8-103) Fibronectin type-III domain cont	1e-05
d1j8ka_	94	b.1.2.1 (A:) Fibronectin, different Fn3 modules {H	1e-05
d1uena_	125	b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens	2e-05
d1fnha3	89	b.1.2.1 (A:183-271) Fibronectin, different Fn3 mod	2e-05
d1qr4a1	87	b.1.2.1 (A:1-87) Tenascin {Chicken (Gallus gallus)	3e-05
d1va9a1	109	b.1.2.1 (A:8-116) Down syndrome cell adhesion mole	3e-05
d1x4za1	108	b.1.2.1 (A:8-115) Brother of CDO precursor (BOC) {	4e-05
d1tdqa3	86	b.1.2.1 (A:186-271) Tenascin {Rat (Rattus norvegic	5e-05
d1x5fa1	107	b.1.2.1 (A:8-114) Neogenin {Human (Homo sapiens) [	5e-05
d1x5ka1	111	b.1.2.1 (A:8-118) Neogenin {Human (Homo sapiens) [	5e-05
d1x5ga1	103	b.1.2.1 (A:8-110) Neogenin {Human (Homo sapiens) [	6e-05
d1fnfa1	94	b.1.2.1 (A:1142-1235) Fibronectin, different Fn3 m	6e-05
d1ueya_	127	b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens	8e-05
d1x4ya1	101	b.1.2.1 (A:8-108) Brother of CDO precursor (BOC) {	1e-04
d1x5ha1	119	b.1.2.1 (A:8-126) Neogenin {Human (Homo sapiens) [	1e-04
d1bpva_	104	b.1.2.1 (A:) Type I titin module {Human (Homo sapi	1e-04
d2dn7a1	94	b.1.2.1 (A:8-101) Receptor-type tyrosine-protein p	2e-04
d1fnfa2	91	b.1.2.1 (A:1236-1326) Fibronectin, different Fn3 m	2e-04
d1cfba2	105	b.1.2.1 (A:710-814) Neuroglian, two amino proximal	2e-04
d1wisa1	111	b.1.2.1 (A:8-118) Sidekick 2 {Human (Homo sapiens)	3e-04
d1fnha1	90	b.1.2.1 (A:3-92) Fibronectin, different Fn3 module	4e-04
d1wfna1	106	b.1.2.1 (A:8-113) Sidekick 2 {Human (Homo sapiens)	4e-04
d2ibga1	95	b.1.2.1 (A:573-667) Hedgehog receptor iHog {Fruit	5e-04
d1fnha2	90	b.1.2.1 (A:93-182) Fibronectin, different Fn3 modu	6e-04
d1cfba1	100	b.1.2.1 (A:610-709) Neuroglian, two amino proximal	7e-04
d1x5ja1	100	b.1.2.1 (A:8-107) Neogenin {Human (Homo sapiens) [	8e-04
d2dtge2	196	b.1.2.1 (E:593-807) Insulin receptor {Human (Homo	8e-04
d1iarb2	101	b.1.2.1 (B:97-197) Interleukin-4 receptor alpha ch	0.001
d1tena_	90	b.1.2.1 (A:) Tenascin {Human (Homo sapiens) [TaxId	0.001
d1wf5a1	108	b.1.2.1 (A:8-115) Sidekick 2 {Human (Homo sapiens)	0.001
d3d48r2	104	b.1.2.1 (R:101-204) Prolactin receptor {Human (Hom	0.001
d1x5ya1	98	b.1.2.1 (A:8-105) Myosin binding protein C, fast-t	0.002
d1uc6a_	109	b.1.2.1 (A:) Ciliary neurotrophic factor receptor	0.002
d1uema_	117	b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens	0.002
d1owwa_	93	b.1.2.1 (A:) Fibronectin, different Fn3 modules {H	0.003
d2ic2a1	107	b.1.2.1 (A:466-572) Hedgehog receptor iHog {Fruit	0.004
d1k85a_	88	b.1.2.1 (A:) Fibronectin type III domain from chit	0.004
d2b5ib2	104	b.1.2.1 (B:104-207) Interleukin-2 receptor beta ch	0.004

>d2cuma1 b.1.2.1 (A:7-99) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin-X
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.9 bits (113), Expect = 1e-07
 Identities = 18/94 (19%), Positives = 31/94 (32%), Gaps = 6/94 (6%)

Query: 356 PNMVKFEDVRATSLTVVLGSEDPSPGNIISYTLWHRRAHEGFPARPTCTLFAPNTRFVVT 415
           P  ++ ++V   +  +        P     Y L                L    T   + 
Sbjct: 5   PRDLEAKEVTPRTALLTW---TEPPVRPAGYLLSFHTPGGQTQ---EILLPGGITSHQLL 58

Query: 416 GLCPATEYQFKVVSSNGTTELGRCEIWFSTGSSR 449
           GL P+T Y  ++ +  G + L      F+TG  R
Sbjct: 59  GLFPSTSYNARLQAMWGQSLLPPVSTSFTTGGLR 92

>d1tdqa2 b.1.2.1 (A:94-185) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 47.2 bits (111), Expect = 2e-07
 Identities = 15/78 (19%), Positives = 24/78 (30%), Gaps = 4/78 (5%)

Query: 356 PNMVKFEDVRATSLTVVLGSEDPSPGNIISYTLWHRRAHEGFPARPTCTLFAPN-TRFVV 414
           P  ++     ATSL +     D S      Y + +                    T+  +
Sbjct: 4   PKNLRVGSRTATSLDL---EWDNSEAEAQEYKVVYSTLAGEQYHEVLVPKGIGPTTKTTL 60

Query: 415 TGLCPATEYQFKVVSSNG 432
           T L P TEY   + +   
Sbjct: 61  TDLVPGTEYGVGISAVMN 78

>d1fnfa3 b.1.2.1 (A:1327-1415) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.8 bits (110), Expect = 3e-07
 Identities = 21/77 (27%), Positives = 28/77 (36%), Gaps = 4/77 (5%)

Query: 356 PNMVKFEDVRATSLTVVLGSEDPSPGNIISYTLWHRRAHEGFPARPTCTLFAPNTRFVVT 415
           P  + F D+ A S TV           I  Y + H   H     R    +        +T
Sbjct: 4   PTGIDFSDITANSFTV---HWIAPRATITGYRIRHHPEHFSGRPR-EDRVPHSRNSITLT 59

Query: 416 GLCPATEYQFKVVSSNG 432
            L P TEY   +V+ NG
Sbjct: 60  NLTPGTEYVVSIVALNG 76

>d1qr4a2 b.1.2.1 (A:88-175) Tenascin {Chicken (Gallus gallus) [TaxId: 9031]} Length = 88

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 45.3 bits (106), Expect = 9e-07
 Identities = 20/80 (25%), Positives = 30/80 (37%), Gaps = 5/80 (6%)

Query: 356 PNMVKFEDVRATSLTVVLGSEDPSPGNIISYTLWHRRAHEGFPARPTCTLFAPNTRFVVT 415
           P  + F D+   S TV   S  P    + SY + +     G       T+    TR  + 
Sbjct: 4   PKGISFSDITENSATV---SWTPPRSRVDSYRVSYVPITGG--TPNVVTVDGSKTRTKLV 58

Query: 416 GLCPATEYQFKVVSSNGTTE 435
            L P  +Y   ++S  G  E
Sbjct: 59  KLVPGVDYNVNIISVKGFEE 78

>d1x5la1 b.1.2.1 (A:8-105) Ephrin type-A receptor 8 {Human (Homo sapiens) [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-A receptor 8
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.6 bits (107), Expect = 9e-07
 Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 2/76 (2%)

Query: 356 PNMVKFEDVRATSLTVVLGSEDPSPGNIISYTLWHRRAHEGFPARPTCTLFAPNTRFVVT 415
             +++ E    TS++++    +   G I+ Y + +         +   TL A  TR  V+
Sbjct: 7   VVVIRQERAGQTSVSLLWQEPEQPNGIILEYEIKYYEKD--KEMQSYSTLKAVTTRATVS 64

Query: 416 GLCPATEYQFKVVSSN 431
           GL P T Y F+V +  
Sbjct: 65  GLKPGTRYVFQVRART 80

>d1fnaa_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.4 bits (104), Expect = 2e-06
 Identities = 14/74 (18%), Positives = 27/74 (36%), Gaps = 4/74 (5%)

Query: 359 VKFEDVRATSLTVVLGSEDPSPGNIISYTLWHRRAHEGFPARPTCTLFAPNTRFVVTGLC 418
           ++      TSL +   S D     +  Y + +       P +   T+    +   ++GL 
Sbjct: 3   LEVVAATPTSLLI---SWDAPAVTVRYYRITYGETGGNSPVQEF-TVPGSKSTATISGLK 58

Query: 419 PATEYQFKVVSSNG 432
           P  +Y   V +  G
Sbjct: 59  PGVDYTITVYAVTG 72

>d1tdqa1 b.1.2.1 (A:1-93) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 44.2 bits (103), Expect = 3e-06
 Identities = 20/90 (22%), Positives = 32/90 (35%), Gaps = 4/90 (4%)

Query: 356 PNMVKFEDVRATSLTVVLGSEDPSPGNIISYTLWHRRAHEGFPARPTCTLFAPNTRFVVT 415
           P  +   DV  T   V      P    +    L +     G   + T  L  P +++ V 
Sbjct: 7   PTQILVRDVSDTVAFVEW---TPPRAKVDFILLKYGL-VGGEGGKTTFRLQPPLSQYSVQ 62

Query: 416 GLCPATEYQFKVVSSNGTTELGRCEIWFST 445
            L P + Y+  + +  GT E       F+T
Sbjct: 63  ALRPGSRYEVSISAVRGTNESDASSTQFTT 92

>d1wfoa1 b.1.2.1 (A:8-124) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.1 bits (103), Expect = 4e-06
 Identities = 18/76 (23%), Positives = 32/76 (42%)

Query: 356 PNMVKFEDVRATSLTVVLGSEDPSPGNIISYTLWHRRAHEGFPARPTCTLFAPNTRFVVT 415
           P  + F +VR TS+ ++        G I++Y + HR             L     ++  T
Sbjct: 24  PMGILFPEVRTTSVRLIWQPPAAPNGIILAYQITHRLNTTTANTATVEVLAPSARQYTAT 83

Query: 416 GLCPATEYQFKVVSSN 431
           GL P + Y F++ +  
Sbjct: 84  GLKPESVYLFRITAQT 99

>d1x5za1 b.1.2.1 (A:8-109) Receptor-type tyrosine-protein phosphatase delta, PTPRD {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Receptor-type tyrosine-protein phosphatase delta, PTPRD
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (102), Expect = 5e-06
 Identities = 19/76 (25%), Positives = 31/76 (40%), Gaps = 5/76 (6%)

Query: 356 PNMVKFEDVRATSLTVVLGSEDPSPGNIISYTLWHRRAHEGFPARPTCTLFAPNTRFVVT 415
           P   K E    TS+ +      P    I +Y L ++    G   R T     P T + + 
Sbjct: 14  PLNFKAEPESETSILLSW--TPPRSDTIANYELVYKDGEHGEEQRIT---IEPGTSYRLQ 68

Query: 416 GLCPATEYQFKVVSSN 431
           GL P + Y F++ + +
Sbjct: 69  GLKPNSLYYFRLAARS 84

>d1x5xa1 b.1.2.1 (A:8-103) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (99), Expect = 1e-05
 Identities = 13/78 (16%), Positives = 26/78 (33%), Gaps = 1/78 (1%)

Query: 355 VPNMVKFEDVRATSLTVVLGSEDPSPGNIISYTLWHRRAHEGFPARPTCTLFAPNTRFVV 414
           +P          T L++       +P +     +      E             +  + V
Sbjct: 3   MPASPVLTKAGITWLSLQWSKPSGTPSDEGISYILEME-EETSGYGFKPKYDGEDLAYTV 61

Query: 415 TGLCPATEYQFKVVSSNG 432
             L  +T+Y+FKV++ N 
Sbjct: 62  KNLRRSTKYKFKVIAYNS 79

>d1j8ka_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.2 bits (98), Expect = 1e-05
 Identities = 19/95 (20%), Positives = 33/95 (34%), Gaps = 4/95 (4%)

Query: 352 NVIVPNMVKFEDVRATSLTVVLGSEDPSPGNIISYTLWHRRAHEGFPARPTCTLFAPNTR 411
           N+  P  + F DV   S+ +   + +   G +  Y + +    +G               
Sbjct: 1   NIDRPKGLAFTDVDVDSIKI---AWESPQGQVSRYRVTYSSPEDGIH-ELFPAPDGEEDT 56

Query: 412 FVVTGLCPATEYQFKVVSSNGTTELGRCEIWFSTG 446
             + GL P +EY   VV+ +   E        ST 
Sbjct: 57  AELQGLRPGSEYTVSVVALHDDMESQPLIGTQSTA 91

>d1uena_ b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA0343 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.6 bits (99), Expect = 2e-05
 Identities = 15/85 (17%), Positives = 25/85 (29%), Gaps = 8/85 (9%)

Query: 356 PNMVKFEDVRATSLTVVLGSEDPSPGN--IISYTLWHRRAHEGFPARPTC------TLFA 407
           P  V+   V +T   V             +  Y +++ +                 T   
Sbjct: 18  PGNVRVNVVNSTLAEVHWDPVPLKSIRGHLQGYRIYYWKTQSSSKRNRRHIEKKILTFQG 77

Query: 408 PNTRFVVTGLCPATEYQFKVVSSNG 432
             T  ++ GL P + Y   V   NG
Sbjct: 78  SKTHGMLPGLEPFSHYTLNVRVVNG 102

>d1fnha3 b.1.2.1 (A:183-271) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.4 bits (96), Expect = 2e-05
 Identities = 19/77 (24%), Positives = 28/77 (36%), Gaps = 4/77 (5%)

Query: 356 PNMVKFEDVRATSLTVVLGSEDPSPGNIISYTLWHRRAHEGFPARPTCTLFAPNTRFVVT 415
           P+ ++F      SL V   S  P    I  Y + + +     P           T   +T
Sbjct: 4   PSNLRFLATTPNSLLV---SWQPPRARITGYIIKYEKPGSP-PREVVPRPRPGVTEATIT 59

Query: 416 GLCPATEYQFKVVSSNG 432
           GL P TEY   V++   
Sbjct: 60  GLEPGTEYTIYVIALKN 76

>d1qr4a1 b.1.2.1 (A:1-87) Tenascin {Chicken (Gallus gallus) [TaxId: 9031]} Length = 87

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 41.0 bits (95), Expect = 3e-05
 Identities = 18/90 (20%), Positives = 31/90 (34%), Gaps = 6/90 (6%)

Query: 356 PNMVKFEDVRATSLTVVLGSEDPSPGNIISYTLWHRRAHEGFPARPTCTLFAPNTRFVVT 415
           P  ++  D   T+L++              Y L +              +   +T F++ 
Sbjct: 3   PKDLEVSDPTETTLSL---RWRRPVAKFDRYRLTYVSPSGKKN---EMEIPVDSTSFILR 56

Query: 416 GLCPATEYQFKVVSSNGTTELGRCEIWFST 445
           GL   TEY   +V+  G  +     I  ST
Sbjct: 57  GLDAGTEYTISLVAEKGRHKSKPTTIKGST 86

>d1va9a1 b.1.2.1 (A:8-116) Down syndrome cell adhesion molecule-like protein 1, DSCAML1 {Human (Homo sapiens) [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Down syndrome cell adhesion molecule-like protein 1, DSCAML1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.4 bits (96), Expect = 3e-05
 Identities = 14/82 (17%), Positives = 28/82 (34%), Gaps = 5/82 (6%)

Query: 356 PNMVKFEDVRATSLTVVLG--SEDPSPGNIISYTLWHRRAHEGFPARPTCTLF---APNT 410
           P  V  + V + S+ V      ++   G I  Y + +R    G   + +         + 
Sbjct: 12  PMDVTLQPVTSQSIQVTWKAPKKELQNGVIRGYQIGYRENSPGSNGQYSIVEMKATGDSE 71

Query: 411 RFVVTGLCPATEYQFKVVSSNG 432
            + +  L    +Y   V + N 
Sbjct: 72  VYTLDNLKKFAQYGVVVQAFNR 93

>d1x4za1 b.1.2.1 (A:8-115) Brother of CDO precursor (BOC) {Mouse (Mus musculus) [TaxId: 10090]} Length = 108

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Brother of CDO precursor (BOC)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.9 bits (95), Expect = 4e-05
 Identities = 15/77 (19%), Positives = 28/77 (36%), Gaps = 1/77 (1%)

Query: 356 PNMVKFEDVRATSLTVVLGSEDPSPGNIISYTLWHRRAHE-GFPARPTCTLFAPNTRFVV 414
           P+         TS+ V           I S+ + +++  + G     T  +        +
Sbjct: 14  PDRPTISTASETSVYVTWIPRGNGGFPIQSFRVEYKKLKKVGDWILATSAIPPSRLSVEI 73

Query: 415 TGLCPATEYQFKVVSSN 431
           TGL     Y+F+V + N
Sbjct: 74  TGLEKGISYKFRVRALN 90

>d1tdqa3 b.1.2.1 (A:186-271) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 86

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.3 bits (93), Expect = 5e-05
 Identities = 14/80 (17%), Positives = 27/80 (33%), Gaps = 6/80 (7%)

Query: 356 PNMVKFEDVRATSLTVVLGSEDPSPGNIISYTLWHRRAHEGFPARPTCTLFAPNTRFVVT 415
           P  +       TS+++       + G I  Y +    +          T+    T + +T
Sbjct: 4   PRDLMVTASSETSISL---IWTKASGPIDHYRITFTPSSGI---SSEVTVPRDRTSYTLT 57

Query: 416 GLCPATEYQFKVVSSNGTTE 435
            L P  EY   + +  G  +
Sbjct: 58  DLEPGAEYIISITAERGRQQ 77

>d1x5fa1 b.1.2.1 (A:8-114) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (95), Expect = 5e-05
 Identities = 14/76 (18%), Positives = 22/76 (28%)

Query: 356 PNMVKFEDVRATSLTVVLGSEDPSPGNIISYTLWHRRAHEGFPARPTCTLFAPNTRFVVT 415
           P  V    V    + +   +    P                   R   T      +  + 
Sbjct: 14  PRDVVASLVSTRFIKLTWRTPASDPHGDNLTYSVFYTKEGIARERVENTSHPGEMQVTIQ 73

Query: 416 GLCPATEYQFKVVSSN 431
            L PAT Y F+V++ N
Sbjct: 74  NLMPATVYIFRVMAQN 89

>d1x5ka1 b.1.2.1 (A:8-118) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 111

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (95), Expect = 5e-05
 Identities = 11/74 (14%), Positives = 24/74 (32%), Gaps = 1/74 (1%)

Query: 359 VKFEDVRATSLTVVLGSEDPSPGNIISYTLWHRRAHEGFPARP-TCTLFAPNTRFVVTGL 417
           V  ++ +  ++ V       + G I  Y +++               +        +  L
Sbjct: 20  VVSKEGKPKTIIVNWQPPSEANGKITGYIIYYSTDVNAEIHDWVIEPVVGNRLTHQIQEL 79

Query: 418 CPATEYQFKVVSSN 431
              T Y FK+ + N
Sbjct: 80  TLDTPYYFKIQARN 93

>d1x5ga1 b.1.2.1 (A:8-110) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.5 bits (94), Expect = 6e-05
 Identities = 17/76 (22%), Positives = 30/76 (39%), Gaps = 4/76 (5%)

Query: 356 PNMVKFEDVRATSLTVVLGSEDPSPGNIISYTLWHRRAHEGFPARPTCTLFAPNTRFVVT 415
              ++      TS+TV   +     G I +Y L++              +   +  + + 
Sbjct: 14  APNLRAYAASPTSITVTWETPVSGNGEIQNYKLYYMEKGT----DKEQDVDVSSHSYTIN 69

Query: 416 GLCPATEYQFKVVSSN 431
           GL   TEY F+VV+ N
Sbjct: 70  GLKKYTEYSFRVVAYN 85

>d1fnfa1 b.1.2.1 (A:1142-1235) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (93), Expect = 6e-05
 Identities = 13/80 (16%), Positives = 23/80 (28%), Gaps = 1/80 (1%)

Query: 356 PNMVKFEDVRATSLTVVLGSEDPSPGNIISYTLWHRRAHEGFPARPTCTLFAPNTRFVVT 415
           P  +  E    T   + +  E  +  +I  Y +     +          + A  +     
Sbjct: 5   PTNLHLEANPDTG-VLTVSWERSTTPDITGYRITTTPTNGQQGNSLEEVVHADQSSCTFD 63

Query: 416 GLCPATEYQFKVVSSNGTTE 435
            L P  EY   V +     E
Sbjct: 64  NLSPGLEYNVSVYTVKDDKE 83

>d1ueya_ b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 127

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA0343 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (94), Expect = 8e-05
 Identities = 13/77 (16%), Positives = 25/77 (32%)

Query: 356 PNMVKFEDVRATSLTVVLGSEDPSPGNIISYTLWHRRAHEGFPARPTCTLFAPNTRFVVT 415
           P  ++  D    S+ +     D +   I  + + +  A          T  +        
Sbjct: 20  PFDLELTDQLDKSVQLSWTPGDDNNSPITKFIIEYEDAMHKPGLWHHQTEVSGTQTTAQL 79

Query: 416 GLCPATEYQFKVVSSNG 432
            L P   Y F+V++ N 
Sbjct: 80  NLSPYVNYSFRVMAVNS 96

>d1x4ya1 b.1.2.1 (A:8-108) Brother of CDO precursor (BOC) {Mouse (Mus musculus) [TaxId: 10090]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Brother of CDO precursor (BOC)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.0 bits (92), Expect = 1e-04
 Identities = 12/80 (15%), Positives = 23/80 (28%), Gaps = 3/80 (3%)

Query: 356 PNMVKFEDVRATSLTVVLGSEDPSPGN---IISYTLWHRRAHEGFPARPTCTLFAPNTRF 412
           P +   + V  T++ +       S  N      Y  +     +         +       
Sbjct: 5   PYITFTDAVNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDSDYKKDMVEGDRYWH 64

Query: 413 VVTGLCPATEYQFKVVSSNG 432
            ++ L P T Y  K+   N 
Sbjct: 65  SISHLQPETSYDIKMQCFNE 84

>d1x5ha1 b.1.2.1 (A:8-126) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 119

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (93), Expect = 1e-04
 Identities = 17/78 (21%), Positives = 29/78 (37%), Gaps = 3/78 (3%)

Query: 356 PNMVKFEDVRATSLTVVLGSEDPSPGN--IISYTLWHRRAHEGFPARPTCTLFAPNTRFV 413
           P  +  E   + S+ +      P+  N  I  Y + +R+A        T          +
Sbjct: 15  PQNLSLEVRNSKSIMIHWQPPAPATQNGQITGYKIRYRKASRKSDVTETLVS-GTQLSQL 73

Query: 414 VTGLCPATEYQFKVVSSN 431
           + GL   TEY F+V +  
Sbjct: 74  IEGLDRGTEYNFRVAALT 91

>d1bpva_ b.1.2.1 (A:) Type I titin module {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Type I titin module
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (91), Expect = 1e-04
 Identities = 13/76 (17%), Positives = 28/76 (36%)

Query: 356 PNMVKFEDVRATSLTVVLGSEDPSPGNIISYTLWHRRAHEGFPARPTCTLFAPNTRFVVT 415
           P      ++   ++T+     + + G  I+  +  +R                   F V+
Sbjct: 6   PGKPVPLNITRHTVTLKWAKPEYTGGFKITSYIVEKRDLPNGRWLKANFSNILENEFTVS 65

Query: 416 GLCPATEYQFKVVSSN 431
           GL     Y+F+V++ N
Sbjct: 66  GLTEDAAYEFRVIAKN 81

>d2dn7a1 b.1.2.1 (A:8-101) Receptor-type tyrosine-protein phosphatase F, PTPRF {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Receptor-type tyrosine-protein phosphatase F, PTPRF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (89), Expect = 2e-04
 Identities = 18/69 (26%), Positives = 27/69 (39%), Gaps = 2/69 (2%)

Query: 363 DVRATSLTVVLGSEDPSPGNIISYTLWHRRAHEGFPARPTCTLFAPNTRFVVTGLCPATE 422
                +  +        PG ++ Y L + RA E  P   T      +  F VTGL   T 
Sbjct: 10  TTAMNTALLQWHPPKELPGELLGYRLQYCRADEARPN--TIDFGKDDQHFTVTGLHKGTT 67

Query: 423 YQFKVVSSN 431
           Y F++ + N
Sbjct: 68  YIFRLAAKN 76

>d1fnfa2 b.1.2.1 (A:1236-1326) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (89), Expect = 2e-04
 Identities = 18/91 (19%), Positives = 32/91 (35%), Gaps = 3/91 (3%)

Query: 356 PNMVKFEDVRATSLTVVLGSEDPSPGNIISYTLWHRRAHEGFPARPTCTLFAPNTRFVVT 415
           P  ++F ++   ++ V   +  P P   ++  L      +        ++   +   V+T
Sbjct: 4   PTDLRFTNIGPDTMRV---TWAPPPSIDLTNFLVRYSPVKNEEDVAELSISPSDNAVVLT 60

Query: 416 GLCPATEYQFKVVSSNGTTELGRCEIWFSTG 446
            L P TEY   V S     E         TG
Sbjct: 61  NLLPGTEYVVSVSSVYEQHESTPLRGRQKTG 91

>d1cfba2 b.1.2.1 (A:710-814) Neuroglian, two amino proximal Fn3 repeats {Drosophila melanogaster [TaxId: 7227]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neuroglian, two amino proximal Fn3 repeats
species: Drosophila melanogaster [TaxId: 7227]

 Score = 38.8 bits (89), Expect = 2e-04
 Identities = 12/78 (15%), Positives = 21/78 (26%), Gaps = 2/78 (2%)

Query: 356 PNMVKFEDVRATSLTVVLGSEDPSPGN--IISYTLWHRRAHEGFPARPTCTLFAPNTRFV 413
           P+ V  +     +L +          N     Y +  +R                    V
Sbjct: 8   PDNVVGQGTEPNNLVISWTPMPEIEHNAPNFHYYVSWKRDIPAAAWENNNIFDWRQNNIV 67

Query: 414 VTGLCPATEYQFKVVSSN 431
           +       +Y  KVV+ N
Sbjct: 68  IADQPTFVKYLIKVVAIN 85

>d1wisa1 b.1.2.1 (A:8-118) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 111

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (89), Expect = 3e-04
 Identities = 12/81 (14%), Positives = 25/81 (30%), Gaps = 4/81 (4%)

Query: 356 PNMVKFEDVRATSLTVVLGSEDPSPGNIISYTLWHRRAHEG----FPARPTCTLFAPNTR 411
           P  +   ++   S+T+          +I  + +  +    G    +      +       
Sbjct: 14  PTNLGISNIGPRSVTLQFRPGYDGKTSISRWLVEAQVGVVGEGEEWLLIHQLSNEPDARS 73

Query: 412 FVVTGLCPATEYQFKVVSSNG 432
             V  L P T Y F++   N 
Sbjct: 74  MEVPDLNPFTCYSFRMRQVNI 94

>d1fnha1 b.1.2.1 (A:3-92) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (87), Expect = 4e-04
 Identities = 20/90 (22%), Positives = 34/90 (37%), Gaps = 4/90 (4%)

Query: 356 PNMVKFEDVRATSLTVVLGSEDPSPGNIISYTLWHRRAHEGFPARPTCTLFAPNTRFVVT 415
           P  +KF  V  TSL+       P    +  Y +      +  P +        ++  VV+
Sbjct: 3   PTDLKFTQVTPTSLSA---QWTPPNVQLTGYRVRVTPKEKTGPMKEINLA-PDSSSVVVS 58

Query: 416 GLCPATEYQFKVVSSNGTTELGRCEIWFST 445
           GL  AT+Y+  V +   T      +   +T
Sbjct: 59  GLMVATKYEVSVYALKDTLTSRPAQGVVTT 88

>d1wfna1 b.1.2.1 (A:8-113) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (88), Expect = 4e-04
 Identities = 14/76 (18%), Positives = 23/76 (30%), Gaps = 1/76 (1%)

Query: 356 PNMVKFEDVRATSLTVVLGSEDPSPGNIISYTLWHRRAHEGFPARPTCTLFAPNTRFVVT 415
              + F ++  TSL V         G +  Y +     +                 + VT
Sbjct: 14  VGHLSFSEILDTSLKVSWQEPGEKNGILTGYRISWEEYNRTNTRVTHYLP-NVTLEYRVT 72

Query: 416 GLCPATEYQFKVVSSN 431
           GL   T Y  +V +  
Sbjct: 73  GLTALTTYTIEVAAMT 88

>d2ibga1 b.1.2.1 (A:573-667) Hedgehog receptor iHog {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 95

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Hedgehog receptor iHog
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 37.8 bits (86), Expect = 5e-04
 Identities = 16/79 (20%), Positives = 31/79 (39%), Gaps = 1/79 (1%)

Query: 355 VPNMVKFEDVRATSLTVVLGSEDPSPG-NIISYTLWHRRAHEGFPARPTCTLFAPNTRFV 413
           VP +++ E+   T++ +       +    I  Y  ++R +             A    F 
Sbjct: 9   VPELLEIEEYSETAVVLHWSLASDADEHLITGYYAYYRPSSSAGEYFKATIEGAHARSFK 68

Query: 414 VTGLCPATEYQFKVVSSNG 432
           +  L  AT Y+FK+ S + 
Sbjct: 69  IAPLETATMYEFKLQSFSA 87

>d1fnha2 b.1.2.1 (A:93-182) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (85), Expect = 6e-04
 Identities = 18/81 (22%), Positives = 32/81 (39%), Gaps = 5/81 (6%)

Query: 352 NVIVPNMVKFEDVRATSLTVVLGSEDPSPGNIISYTLWHRRAHEGFPARPTCTLFAPNTR 411
           NV  P   +  D   T++T+   S       I  + +    A+   P + T         
Sbjct: 1   NVSPPRRARVTDATETTITI---SWRTKTETITGFQVDAVPANGQTPIQRTIK--PDVRS 55

Query: 412 FVVTGLCPATEYQFKVVSSNG 432
           + +TGL P T+Y+  + + N 
Sbjct: 56  YTITGLQPGTDYKIYLYTLND 76

>d1cfba1 b.1.2.1 (A:610-709) Neuroglian, two amino proximal Fn3 repeats {Drosophila melanogaster [TaxId: 7227]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neuroglian, two amino proximal Fn3 repeats
species: Drosophila melanogaster [TaxId: 7227]

 Score = 37.3 bits (85), Expect = 7e-04
 Identities = 14/79 (17%), Positives = 24/79 (30%), Gaps = 2/79 (2%)

Query: 355 VPNMVKFEDVRATSLTVVLGSEDPSPGN--IISYTLWHRRAHEGFPARPTCTLFAPNTRF 412
           VPN  K   +   +    +  E        I+ YT+    +                   
Sbjct: 5   VPNAPKLTGITCQADKAEIHWEQQGDNRSPILHYTIQFNTSFTPASWDAAYEKVPNTDSS 64

Query: 413 VVTGLCPATEYQFKVVSSN 431
            V  + P   Y F+V++ N
Sbjct: 65  FVVQMSPWANYTFRVIAFN 83

>d1x5ja1 b.1.2.1 (A:8-107) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (85), Expect = 8e-04
 Identities = 16/79 (20%), Positives = 26/79 (32%), Gaps = 2/79 (2%)

Query: 356 PNMVKFEDVRATSLTVVLG--SEDPSPGNIISYTLWHRRAHEGFPARPTCTLFAPNTRFV 413
           P  V+   +   ++ +     S         S     R               A    ++
Sbjct: 5   PVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKNANATTLSYL 64

Query: 414 VTGLCPATEYQFKVVSSNG 432
           VTGL P T Y+F V+ + G
Sbjct: 65  VTGLKPNTLYEFSVMVTKG 83

>d2dtge2 b.1.2.1 (E:593-807) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 196

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (89), Expect = 8e-04
 Identities = 13/103 (12%), Positives = 30/103 (29%)

Query: 339 SNTILPNPSVQGSNVIVPNMVKFEDVRATSLTVVLGSEDPSPGNIISYTLWHRRAHEGFP 398
            ++     S   ++  +   ++    R T    +         +    +L          
Sbjct: 84  EDSAGECCSCPKTDSQILKELEESSFRKTFEDYLHNVVFVPRPSRKRRSLGDVGNAGNNE 143

Query: 399 ARPTCTLFAPNTRFVVTGLCPATEYQFKVVSSNGTTELGRCEI 441
                         V++GL   T Y+ ++ + N  T   RC +
Sbjct: 144 EHRPFEKVVNKESLVISGLRHFTGYRIELQACNQDTPEERCSV 186

>d1iarb2 b.1.2.1 (B:97-197) Interleukin-4 receptor alpha chain {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-4 receptor alpha chain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.0 bits (84), Expect = 0.001
 Identities = 8/80 (10%), Positives = 22/80 (27%), Gaps = 4/80 (5%)

Query: 356 PNMVKFEDVRATSLTVVLGSEDPSPGNIISYTLWHRRAHEGFPARPTCTLF----APNTR 411
           P  +      + +L +   +  P    + ++  +                      P+ R
Sbjct: 5   PGNLTVHTNVSDTLLLTWSNPYPPDNYLYNHLTYAVNIWSENDPADFRIYNVTYLEPSLR 64

Query: 412 FVVTGLCPATEYQFKVVSSN 431
              + L     Y+ +V +  
Sbjct: 65  IAASTLKSGISYRARVRAWA 84

>d1tena_ b.1.2.1 (A:) Tenascin {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (84), Expect = 0.001
 Identities = 17/90 (18%), Positives = 33/90 (36%), Gaps = 4/90 (4%)

Query: 356 PNMVKFEDVRATSLTVVLGSEDPSPGNIISYTLWHRRAHEGFPARPTCTLFAPNTRFVVT 415
           P+ ++ +DV  T+  +   +       I    L +           T  L     ++ + 
Sbjct: 5   PSQIEVKDVTDTTALI---TWFKPLAEIDGIELTYGIKDVPGDRT-TIDLTEDENQYSIG 60

Query: 416 GLCPATEYQFKVVSSNGTTELGRCEIWFST 445
            L P TEY+  ++S  G       +  F+T
Sbjct: 61  NLKPDTEYEVSLISRRGDMSSNPAKETFTT 90

>d1wf5a1 b.1.2.1 (A:8-115) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 108

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (85), Expect = 0.001
 Identities = 14/73 (19%), Positives = 23/73 (31%), Gaps = 1/73 (1%)

Query: 359 VKFEDVRATSLTVVLGSEDPSPGNIISYTLWHRRAHEGFPARPTCTLFAPNTRFVVTGLC 418
                V   ++ +           +I Y L     +  +            T   V GL 
Sbjct: 19  ATLSTVERRAINLTWTKPFDGNSPLIRYILEMSENNAPWTVLLASV-DPKATSVTVKGLV 77

Query: 419 PATEYQFKVVSSN 431
           PA  YQF++ + N
Sbjct: 78  PARSYQFRLCAVN 90

>d3d48r2 b.1.2.1 (R:101-204) Prolactin receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Prolactin receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (84), Expect = 0.001
 Identities = 14/75 (18%), Positives = 21/75 (28%), Gaps = 1/75 (1%)

Query: 359 VKFEDVRATSLTVVLGSEDPSPGNIISYTL-WHRRAHEGFPARPTCTLFAPNTRFVVTGL 417
           VK  + R   L +              +TL +  R      A          T F +  L
Sbjct: 13  VKQPEDRKPYLWIKWSPPTLIDLKTGWFTLLYEIRLKPEKAAEWEIHFAGQQTEFKILSL 72

Query: 418 CPATEYQFKVVSSNG 432
            P  +Y  +V     
Sbjct: 73  HPGQKYLVQVRCKPD 87

>d1x5ya1 b.1.2.1 (A:8-105) Myosin binding protein C, fast-type {Mouse (Mus musculus) [TaxId: 10090]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Myosin binding protein C, fast-type
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.0 bits (82), Expect = 0.002
 Identities = 17/76 (22%), Positives = 21/76 (27%)

Query: 356 PNMVKFEDVRATSLTVVLGSEDPSPGNIISYTLWHRRAHEGFPARPTCTLFAPNTRFVVT 415
           P  +  EDV  T+ T+     D      I   L            P          F V 
Sbjct: 5   PQHLTVEDVTDTTTTLKWRPPDRIGAGGIDGYLVEYCLEGSEEWVPANKEPVERCGFTVK 64

Query: 416 GLCPATEYQFKVVSSN 431
            L       F+VV  N
Sbjct: 65  DLPTGARILFRVVGVN 80

>d1uc6a_ b.1.2.1 (A:) Ciliary neurotrophic factor receptor alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ciliary neurotrophic factor receptor alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.1 bits (82), Expect = 0.002
 Identities = 11/78 (14%), Positives = 22/78 (28%), Gaps = 2/78 (2%)

Query: 356 PNMVKFEDVRATSLTVVLGSEDP--SPGNIISYTLWHRRAHEGFPARPTCTLFAPNTRFV 413
           P  V    V +    + +  + P   P        +  R       +      +  T   
Sbjct: 11  PENVVARPVPSNPRRLEVTWQTPSTWPDPESFPLKFFLRYRPLILDQWQHVELSNGTAHT 70

Query: 414 VTGLCPATEYQFKVVSSN 431
           +T      EY  +V + +
Sbjct: 71  ITDAYAGKEYIIQVAAKD 88

>d1uema_ b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA1568 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.4 bits (83), Expect = 0.002
 Identities = 17/76 (22%), Positives = 26/76 (34%), Gaps = 1/76 (1%)

Query: 356 PNMVKFEDVRATSLTVVLGSEDPSPGNIISYTLWHRRAHEGFPARPTCTLFAPNTRFVVT 415
           P+  +  DV   S+T+      P      +Y +           +         T + V 
Sbjct: 19  PSKPQVTDVTKNSVTLSWQPGTPGTLPASAYIIEAFSQSVSNSWQTVAN-HVKTTLYTVR 77

Query: 416 GLCPATEYQFKVVSSN 431
           GL P T Y F V + N
Sbjct: 78  GLRPNTIYLFMVRAIN 93

>d1owwa_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.2 bits (80), Expect = 0.003
 Identities = 17/92 (18%), Positives = 32/92 (34%), Gaps = 1/92 (1%)

Query: 356 PNMVKFEDVRATSLTVVLGSEDPSPGNIISYTLWHRRAHEGFPARPTCTLFAPNTRFVVT 415
           P  V   +  +   +  +    P P +I  Y L  R  +     +   T+      + + 
Sbjct: 3   PVEVFITETPSQPNSHPIQWNAPQPSHISKYILRWRPKNSVGRWKE-ATIPGHLNSYTIK 61

Query: 416 GLCPATEYQFKVVSSNGTTELGRCEIWFSTGS 447
           GL P   Y+ +++S             F+T S
Sbjct: 62  GLKPGVVYEGQLISIQQYGHQEVTRFDFTTTS 93

>d2ic2a1 b.1.2.1 (A:466-572) Hedgehog receptor iHog {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Hedgehog receptor iHog
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 35.4 bits (80), Expect = 0.004
 Identities = 10/87 (11%), Positives = 26/87 (29%), Gaps = 11/87 (12%)

Query: 356 PNMVKFEDVRATSLTVVLGSEDPSPGNIISYTLWHRRAHEG-----------FPARPTCT 404
           P       +   S+ +           I+ + + +R   +            +      +
Sbjct: 3   PTPPNVTRLSDESVMLRWMVPRNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPKWNS 62

Query: 405 LFAPNTRFVVTGLCPATEYQFKVVSSN 431
               +    VT L P   Y+F++++  
Sbjct: 63  ELGKSFTASVTDLKPQHTYRFRILAVY 89

>d1k85a_ b.1.2.1 (A:) Fibronectin type III domain from chitinase A1. {Bacillus circulans [TaxId: 1397]} Length = 88

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type III domain from chitinase A1.
species: Bacillus circulans [TaxId: 1397]

 Score = 34.8 bits (79), Expect = 0.004
 Identities = 10/78 (12%), Positives = 22/78 (28%), Gaps = 10/78 (12%)

Query: 355 VPNMVKFEDVRATSLTVVLGSEDPSPGNIISYTLWHRRAHEGFPARPTCTLFAPNTRFVV 414
            P  +       +S+T+       +    ++    +                   T   +
Sbjct: 6   APTNLASTAQTTSSITLSW--TASTDNVGVTGYDVYNGTALATTV--------TGTTATI 55

Query: 415 TGLCPATEYQFKVVSSNG 432
           +GL   T Y F V + + 
Sbjct: 56  SGLAADTSYTFTVKAKDA 73

>d2b5ib2 b.1.2.1 (B:104-207) Interleukin-2 receptor beta chain {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-2 receptor beta chain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.3 bits (80), Expect = 0.004
 Identities = 14/89 (15%), Positives = 21/89 (23%), Gaps = 2/89 (2%)

Query: 356 PNMVKFEDVRATSLTVVLGSEDPSPGNIISYTLWHRRAHEGFPARPTCTLF--APNTRFV 413
           P  ++   V      +       S           R    G        L          
Sbjct: 6   PISLQVVHVETHRCNISWEISQASHYFERHLEFEARTLSPGHTWEEAPLLTLKQKQEWIC 65

Query: 414 VTGLCPATEYQFKVVSSNGTTELGRCEIW 442
           +  L P T+Y+F+V       E      W
Sbjct: 66  LETLTPDTQYEFQVRVKPLQGEFTTWSPW 94

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	746
d2ibga1	95	Hedgehog receptor iHog {Fruit fly (Drosophila mela	98.4
d2fnba_	95	Fibronectin, different Fn3 modules {Human (Homo sa	98.38
d1qr4a2	88	Tenascin {Chicken (Gallus gallus) [TaxId: 9031]}	98.31
d1fnha3	89	Fibronectin, different Fn3 modules {Human (Homo sa	98.28
d1tena_	90	Tenascin {Human (Homo sapiens) [TaxId: 9606]}	98.26
d1tdqa2	92	Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}	98.25
d1fnfa3	89	Fibronectin, different Fn3 modules {Human (Homo sa	98.23
d1ujta_	120	KIAA1568 protein {Human (Homo sapiens) [TaxId: 960	98.23
d1j8ka_	94	Fibronectin, different Fn3 modules {Human (Homo sa	98.22
d2cuma1	93	Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}	98.22
d1fnfa2	91	Fibronectin, different Fn3 modules {Human (Homo sa	98.21
d1qr4a1	87	Tenascin {Chicken (Gallus gallus) [TaxId: 9031]}	98.2
d1wfoa1	117	Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}	98.19
d1fnha2	90	Fibronectin, different Fn3 modules {Human (Homo sa	98.17
d2dn7a1	94	Receptor-type tyrosine-protein phosphatase F, PTPR	98.16
d1x5ga1	103	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	98.14
d2vkwa2	93	Neural cell adhesion molecule 1, NCAM {Human (Homo	98.13
d1fnha1	90	Fibronectin, different Fn3 modules {Human (Homo sa	98.12
d2djsa1	95	Ephrin type-B receptor 1 {Human (Homo sapiens) [Ta	98.08
d1fnfa1	94	Fibronectin, different Fn3 modules {Human (Homo sa	98.08
d1x5fa1	107	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	98.04
d1wfna1	106	Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}	98.03
d1fnaa_	91	Fibronectin, different Fn3 modules {Human (Homo sa	98.02
d1x4ya1	101	Brother of CDO precursor (BOC) {Mouse (Mus musculu	97.99
d1qg3a1	92	Integrin beta-4 subunit {Human (Homo sapiens) [Tax	97.96
d1tdqa1	93	Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}	97.93
d1x4za1	108	Brother of CDO precursor (BOC) {Mouse (Mus musculu	97.91
d1x5ka1	111	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	97.89
d1uema_	117	KIAA1568 protein {Human (Homo sapiens) [TaxId: 960	97.89
d1x5za1	102	Receptor-type tyrosine-protein phosphatase delta,	97.89
d1x5la1	98	Ephrin type-A receptor 8 {Human (Homo sapiens) [Ta	97.88
d1x5aa1	94	Ephrin type-A receptor 1 {Mouse (Mus musculus) [Ta	97.88
d1wfta_	123	Host cell factor 2, HCF-2 {Mouse (Mus musculus) [T	97.85
d2cuha1	102	Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}	97.85
d1tdqa3	86	Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}	97.84
d1qg3a2	103	Integrin beta-4 subunit {Human (Homo sapiens) [Tax	97.82
d1x5xa1	96	Fibronectin type-III domain containing protein 3a,	97.79
d2b5ib2	104	Interleukin-2 receptor beta chain {Human (Homo sap	97.79
d1x5ha1	119	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	97.78
d1x5ja1	100	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	97.78
d1cfba1	100	Neuroglian, two amino proximal Fn3 repeats {Drosop	97.75
d1wf5a1	108	Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}	97.74
d1x3da1	105	Fibronectin type-III domain containing protein 3a,	97.73
d1wfua_	120	Fibronectin type 3 and ankyrin repeat domains 1 pr	97.72
d2haza1	101	Neural cell adhesion molecule 1, NCAM {Human (Homo	97.71
d2dtge3	125	Insulin receptor {Human (Homo sapiens) [TaxId: 960	97.69
d1x5ya1	98	Myosin binding protein C, fast-type {Mouse (Mus mu	97.68
d1cfba2	105	Neuroglian, two amino proximal Fn3 repeats {Drosop	97.65
d1ueya_	127	KIAA0343 protein {Human (Homo sapiens) [TaxId: 960	97.65
d1bpva_	104	Type I titin module {Human (Homo sapiens) [TaxId:	97.64
d1x4xa1	93	Fibronectin type-III domain containing protein 3a,	97.63
d1owwa_	93	Fibronectin, different Fn3 modules {Human (Homo sa	97.62
d1v5ja_	108	KIAA1355 {Human (Homo sapiens) [TaxId: 9606]}	97.61
d1va9a1	109	Down syndrome cell adhesion molecule-like protein	97.59
d1x5ia1	113	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	97.57
d2cuia1	101	Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}	97.54
d2crza1	97	Fibronectin type-III domain containing protein 3a,	97.5
d2crma1	107	Fibronectin type-III domain containing protein 3a,	97.5
d2ic2a1	107	Hedgehog receptor iHog {Fruit fly (Drosophila mela	97.49
d1wisa1	111	Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}	97.43
d2d9qb2	105	Granulocyte colony-stimulating factor (GC-SF) rece	97.39
d1k85a_	88	Fibronectin type III domain from chitinase A1. {Ba	97.33
d1wk0a_	137	Fibronectin type-III domain containing protein 3a,	97.33
d1wj3a_	117	Contactin 3 (KIAA1496) {Human (Homo sapiens) [TaxI	97.3
d1bqua2	115	Cytokine receptor gp130 cytokine-binding domains {	97.29
d1uena_	125	KIAA0343 protein {Human (Homo sapiens) [TaxId: 960	97.24
d1cd9b2	106	Granulocyte colony-stimulating factor (GC-SF) rece	97.18
d1bqua1	95	Cytokine receptor gp130 cytokine-binding domains {	96.82
d3d48r2	104	Prolactin receptor {Human (Homo sapiens) [TaxId: 9	96.8
d1cd9b1	107	Granulocyte colony-stimulating factor (GC-SF) rece	96.79
d1iarb2	101	Interleukin-4 receptor alpha chain {Human (Homo sa	96.74
d1n26a3	104	Interleukin-6 receptor alpha chain, domains 2 and	96.64
d2dtge1	102	Insulin receptor {Human (Homo sapiens) [TaxId: 960	96.53
d2b5ic1	95	Cytokine receptor common gamma chain {Human (Homo	96.42
d2gysa4	100	Common beta-chain in the GM-CSF, IL-3 and IL-5 rec	96.23
d1f6fb2	103	Prolactin receptor {Rat (Rattus norvegicus) [TaxId	96.02
d1erna2	105	Erythropoietin (EPO) receptor {Human (Homo sapiens	95.7
d1axib2	106	Growth hormone receptor {Human (Homo sapiens) [Tax	95.53
d2gysa2	114	Common beta-chain in the GM-CSF, IL-3 and IL-5 rec	94.88
d1uc6a_	109	Ciliary neurotrophic factor receptor alpha {Human	94.09
d1fyhb1	98	Interferon-gamma receptor alpha chain {Human (Homo	93.55
d2cspa1	117	Rim binding protein 2 {Human (Homo sapiens) [TaxId	93.08
d2dtge2	196	Insulin receptor {Human (Homo sapiens) [TaxId: 960	92.62
d1y6kr1	99	Interleukin-10 receptor 1, IL-10R1 {Human (Homo sa	88.0
d2c4fu1	116	Extracellular region of human tissue factor {Human	87.77
d2dtge2	196	Insulin receptor {Human (Homo sapiens) [TaxId: 960	85.69
d1wepa_	79	PHD finger protein 8 {Mouse (Mus musculus) [TaxId:	85.59

>d2ibga1 b.1.2.1 (A:573-667) Hedgehog receptor iHog {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Hedgehog receptor iHog
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.40  E-value=3.6e-07  Score=67.25  Aligned_cols=84  Identities=19%  Similarity=0.202  Sum_probs=64.1

Q ss_pred             CCCCCCEEEEEEEECEEEEEEECCCCC-CCCCCCEEEEEEEECCCCCCCCCCEEEECCCCEEEEECCCCCEEEEEEEEEC
Q ss_conf             765674179998412048999276799-9998613798763048788999924431577313752577660245999851
Q 004540          352 NVIVPNMVKFEDVRATSLTVVLGSEDP-SPGNIISYTLWHRRAHEGFPARPTCTLFAPNTRFVVTGLCPATEYQFKVVSS  430 (746)
Q Consensus       352 ~l~~~~~vrFEevt~tSv~vvL~~~~~-s~~~i~Gy~LWhrks~~~y~~ePt~~~~~p~~r~lvs~L~P~TEY~fkvvsF  430 (746)
                      -++++-.++.+.++++||.|.+..... ....|.||+|+||.........-..+.....+.+.|.||.|.|.|.|||.+|
T Consensus         6 P~~~P~~~~v~~~s~tsv~l~W~~P~~~~~~~i~gY~i~y~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~   85 (95)
T d2ibga1           6 PMPVPELLEIEEYSETAVVLHWSLASDADEHLITGYYAYYRPSSSAGEYFKATIEGAHARSFKIAPLETATMYEFKLQSF   85 (95)
T ss_dssp             CCCCCEECCCBCCSSSCEEEEEECCTTCCGGGCCEEEEEEEETTCCSCCEEEEEECTTCCEEEECSCCTTCEEEEEEEEE
T ss_pred             CCCCCCCEEEEEECCCEEEEEEEEEEECCCCCCCCCCEEEEEEEECCEEEEEECCCCCEEEEEEEECCCCEEEEEEEEEE
T ss_conf             89989671999948997999997301005984322203676420000011121268840699990016981999999998


Q ss_pred             CCCCC
Q ss_conf             68866
Q 004540          431 NGTTE  435 (746)
Q Consensus       431 ~~~~e  435 (746)
                      ++.|+
T Consensus        86 n~~G~   90 (95)
T d2ibga1          86 SAASA   90 (95)
T ss_dssp             CSSCB
T ss_pred             ECCCC
T ss_conf             09923

>d2fnba_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=7.1e-07  Score=65.12  Aligned_cols=91  Identities=22%  Similarity=0.233  Sum_probs=69.5

Q ss_pred             CCCCCCCCCEEEEEEEECEEEEEEECCCCCCCCCCCEEEEEEEECCCC-CCCCCCEEEECCCCEEEEECCCCCEEEEEEE
Q ss_conf             788765674179998412048999276799999861379876304878-8999924431577313752577660245999
Q 004540          349 QGSNVIVPNMVKFEDVRATSLTVVLGSEDPSPGNIISYTLWHRRAHEG-FPARPTCTLFAPNTRFVVTGLCPATEYQFKV  427 (746)
Q Consensus       349 q~~~l~~~~~vrFEevt~tSv~vvL~~~~~s~~~i~Gy~LWhrks~~~-y~~ePt~~~~~p~~r~lvs~L~P~TEY~fkv  427 (746)
                      ++..+|++..+++.+++++|++|-+.-.+  ...|.||+++|+..... ...  .-.+....+.+.|.||.|.|+|.|+|
T Consensus         2 ~~~~vp~P~~l~v~~~t~~si~l~W~~p~--~~~i~~Y~v~~~~~~~~~~~~--~~~~~~~~t~~~i~~L~p~t~Y~~~V   77 (95)
T d2fnba_           2 RGSEVPQLTDLSFVDITDSSIGLRWTPLN--SSTIIGYRITVVAAGEGIPIF--EDFVDSSVGYYTVTGLEPGIDYDISV   77 (95)
T ss_dssp             CSCCSCCCTTCEEECCCSSCEEEECCCCC--CSSCCEEEEEEEEETSCCEEE--EEECCSSCSEEEECCCCTTSEEEEEE
T ss_pred             CCCCCCCCCCEEEEEECCCEEEEEEEECC--CCEEEEEEEEEEEEECCCEEE--EEEECCCCEEEEEECCCCCEEEEEEE
T ss_conf             76886759985999976998999999658--806875899999800031289--99968997699995312787999999


Q ss_pred             EECCCCCCCCCEEEEE
Q ss_conf             8516886675214687
Q 004540          428 VSSNGTTELGRCEIWF  443 (746)
Q Consensus       428 vsF~~~~elg~~E~k~  443 (746)
                      .++++.|+-....+..
T Consensus        78 ~a~~~~g~s~p~~~~~   93 (95)
T d2fnba_          78 ITLINGGESAPTTLTQ   93 (95)
T ss_dssp             EEEETTEECCCCEEEE
T ss_pred             EEEECCCEECCEEEEE
T ss_conf             9990994948997898

>d1qr4a2 b.1.2.1 (A:88-175) Tenascin {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.31  E-value=3.6e-06  Score=60.07  Aligned_cols=83  Identities=22%  Similarity=0.260  Sum_probs=66.6

Q ss_pred             CCCCEEEEEEEECEEEEEEECCCCCCCCCCCEEEEEEEECCCCCCCCCCEEEECCCCEEEEECCCCCEEEEEEEEECCCC
Q ss_conf             56741799984120489992767999998613798763048788999924431577313752577660245999851688
Q 004540          354 IVPNMVKFEDVRATSLTVVLGSEDPSPGNIISYTLWHRRAHEGFPARPTCTLFAPNTRFVVTGLCPATEYQFKVVSSNGT  433 (746)
Q Consensus       354 ~~~~~vrFEevt~tSv~vvL~~~~~s~~~i~Gy~LWhrks~~~y~~ePt~~~~~p~~r~lvs~L~P~TEY~fkvvsF~~~  433 (746)
                      .++-.++|.+|+++|++|-++-.   ...+.||.|+|+.....  ..-...+...++++.+.||.|.|+|.|+|.++++.
T Consensus         2 ~~P~~l~v~~v~~~s~~l~W~~~---~~~~~~Y~i~~~~~~~~--~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~   76 (88)
T d1qr4a2           2 GSPKGISFSDITENSATVSWTPP---RSRVDSYRVSYVPITGG--TPNVVTVDGSKTRTKLVKLVPGVDYNVNIISVKGF   76 (88)
T ss_dssp             CCCSCEEEESCCSSCEEEEECCC---SSCCSEEEEEEEETTCC--CCEEEEEETTCCEEEECSCCSSCEEEEEEEEEETT
T ss_pred             CCCCCEEEEEECCCEEEEEEECC---CEEECEEEEEEEECCCC--CEEEEEECCCCCEEEECCCCCCCEEEEEEEEEECC
T ss_conf             68966499995299999999836---07602489999934589--61789725871199999778998999999999299


Q ss_pred             CCCCCEEE
Q ss_conf             66752146
Q 004540          434 TELGRCEI  441 (746)
Q Consensus       434 ~elg~~E~  441 (746)
                      |+=.....
T Consensus        77 g~s~p~~~   84 (88)
T d1qr4a2          77 EESEPISG   84 (88)
T ss_dssp             EECCCEEE
T ss_pred             CCCCCEEE
T ss_conf             89189999

>d1fnha3 b.1.2.1 (A:183-271) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.28  E-value=4.6e-06  Score=59.36  Aligned_cols=88  Identities=20%  Similarity=0.181  Sum_probs=67.0

Q ss_pred             CCCCEEEEEEEECEEEEEEECCCCCCCCCCCEEEEEEEECCCCCCCCCCEEEECCCCEEEEECCCCCEEEEEEEEECCCC
Q ss_conf             56741799984120489992767999998613798763048788999924431577313752577660245999851688
Q 004540          354 IVPNMVKFEDVRATSLTVVLGSEDPSPGNIISYTLWHRRAHEGFPARPTCTLFAPNTRFVVTGLCPATEYQFKVVSSNGT  433 (746)
Q Consensus       354 ~~~~~vrFEevt~tSv~vvL~~~~~s~~~i~Gy~LWhrks~~~y~~ePt~~~~~p~~r~lvs~L~P~TEY~fkvvsF~~~  433 (746)
                      .++--+++.+++++|++|.++..   ..+|.||.|.|+..... .......+....+.+.|.||.|.|+|.|+|.++++.
T Consensus         2 daP~nl~v~~~~~~s~~l~W~~p---~~~i~~Y~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~L~p~t~Y~~~V~a~n~~   77 (89)
T d1fnha3           2 DAPSNLRFLATTPNSLLVSWQPP---RARITGYIIKYEKPGSP-PREVVPRPRPGVTEATITGLEPGTEYTIYVIALKNN   77 (89)
T ss_dssp             CCCEEEEEEEEETTEEEEEEECC---SSCCSEEEEEEECTTSC-CEECTTCCCTTCCEEEEESCCTTCEEEEEEEEESSS
T ss_pred             CCCCCCEEEEECCCEEEEEEECC---CCCCCEEEEEEEECCCC-CCEEEEECCCCCCEEEEEEEECCCEEEEEEEEECCC
T ss_conf             42938899995699999999499---73786289999605677-628999728985199999510997999999999199


Q ss_pred             CCCCCEEEEEEC
Q ss_conf             667521468750
Q 004540          434 TELGRCEIWFST  445 (746)
Q Consensus       434 ~elg~~E~k~~T  445 (746)
                      |+-....++..|
T Consensus        78 g~S~p~~~~~~T   89 (89)
T d1fnha3          78 QKSEPLIGRKKT   89 (89)
T ss_dssp             CEEEEEEEEEEC
T ss_pred             CEECCEEEEEEC
T ss_conf             890799999799

>d1tena_ b.1.2.1 (A:) Tenascin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.26  E-value=5.4e-06  Score=58.85  Aligned_cols=89  Identities=20%  Similarity=0.227  Sum_probs=70.0

Q ss_pred             CCCCCEEEEEEEECEEEEEEECCCCCCCCCCCEEEEEEEECCCCCCCCCCEEEECCCCEEEEECCCCCEEEEEEEEECCC
Q ss_conf             65674179998412048999276799999861379876304878899992443157731375257766024599985168
Q 004540          353 VIVPNMVKFEDVRATSLTVVLGSEDPSPGNIISYTLWHRRAHEGFPARPTCTLFAPNTRFVVTGLCPATEYQFKVVSSNG  432 (746)
Q Consensus       353 l~~~~~vrFEevt~tSv~vvL~~~~~s~~~i~Gy~LWhrks~~~y~~ePt~~~~~p~~r~lvs~L~P~TEY~fkvvsF~~  432 (746)
                      +.++-.+++.+|+++|++|-+.-.   ...+.||.+.|+...... ..-...+....+.+.|.||.|.|+|.|+|.++++
T Consensus         2 ld~P~~l~v~~~s~~s~~l~W~~p---~~~~~~y~v~~~~~~~~~-~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~   77 (90)
T d1tena_           2 LDAPSQIEVKDVTDTTALITWFKP---LAEIDGIELTYGIKDVPG-DRTTIDLTEDENQYSIGNLKPDTEYEVSLISRRG   77 (90)
T ss_dssp             CCCCEEEEEESCCSSCEEEEEECC---SSCCSEEEEEEEETTCTT-CCEEEEEETTCCEEEECSCCTTCEEEEEEEEEET
T ss_pred             CCCCCCCEEEEECCCEEEEEEEEC---CEEECCEEEEEEECCCCC-EEEEEEECCCCCEEEEEEECCCCEEEEEEEEEEC
T ss_conf             888988699995699999999807---647155799999857984-1688870577320067541299889999999949


Q ss_pred             CCCCCCEEEEEEC
Q ss_conf             8667521468750
Q 004540          433 TTELGRCEIWFST  445 (746)
Q Consensus       433 ~~elg~~E~k~~T  445 (746)
                      .|+-......+.|
T Consensus        78 ~g~s~~~~~~~~T   90 (90)
T d1tena_          78 DMSSNPAKETFTT   90 (90)
T ss_dssp             TEECCCEEEEEEC
T ss_pred             CCEECCEEEEEEC
T ss_conf             9894899899899

>d1tdqa2 b.1.2.1 (A:94-185) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.25  E-value=2.7e-06  Score=61.02  Aligned_cols=89  Identities=17%  Similarity=0.168  Sum_probs=68.5

Q ss_pred             CCCCEEEEEEEECEEEEEEECCCCCCCCCCCEEEEEEEECCCC-CCCCCCEEEECCCCEEEEECCCCCEEEEEEEEECCC
Q ss_conf             5674179998412048999276799999861379876304878-899992443157731375257766024599985168
Q 004540          354 IVPNMVKFEDVRATSLTVVLGSEDPSPGNIISYTLWHRRAHEG-FPARPTCTLFAPNTRFVVTGLCPATEYQFKVVSSNG  432 (746)
Q Consensus       354 ~~~~~vrFEevt~tSv~vvL~~~~~s~~~i~Gy~LWhrks~~~-y~~ePt~~~~~p~~r~lvs~L~P~TEY~fkvvsF~~  432 (746)
                      .++-.+++.+++++||+|-++..   ...+.||.+.|+..... ............++.+.|.||.|.|+|.|+|.++++
T Consensus         2 daP~~l~v~~~~~~sv~v~W~~p---~~~~~~y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~   78 (92)
T d1tdqa2           2 DAPKNLRVGSRTATSLDLEWDNS---EAEAQEYKVVYSTLAGEQYHEVLVPKGIGPTTKTTLTDLVPGTEYGVGISAVMN   78 (92)
T ss_dssp             CCCEEEEEEEECSSCEEEEEECC---SSCCSEEEEEEEETTCCCCEEEEEECCSSSEEEEEECSCCTTCEEEEEEEEEET
T ss_pred             CCCCCCEEEEECCCEEEEEEEEC---CCCCCCEEEEEEECCCCCCEEEEEEECCCCEEEEEECCCCCCCEEEEEEEEEEC
T ss_conf             56918899995699999999953---773463289999757773026688745998049999996489999999999909


Q ss_pred             CCCCCCEEEEEEC
Q ss_conf             8667521468750
Q 004540          433 TTELGRCEIWFST  445 (746)
Q Consensus       433 ~~elg~~E~k~~T  445 (746)
                      .|+=....+.+.|
T Consensus        79 ~g~s~p~~~~~~T   91 (92)
T d1tdqa2          79 SKQSIPATMNART   91 (92)
T ss_dssp             TEECCCEEEEEEC
T ss_pred             CCEECCEEEEEEC
T ss_conf             9893577799999

>d1fnfa3 b.1.2.1 (A:1327-1415) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.23  E-value=5.9e-06  Score=58.56  Aligned_cols=87  Identities=25%  Similarity=0.246  Sum_probs=66.6

Q ss_pred             CCCCEEEEEEEECEEEEEEECCCCCCCCCCCEEEEEEEECCCCCCCCCCEEEECCCCEEEEECCCCCEEEEEEEEECCCC
Q ss_conf             56741799984120489992767999998613798763048788999924431577313752577660245999851688
Q 004540          354 IVPNMVKFEDVRATSLTVVLGSEDPSPGNIISYTLWHRRAHEGFPARPTCTLFAPNTRFVVTGLCPATEYQFKVVSSNGT  433 (746)
Q Consensus       354 ~~~~~vrFEevt~tSv~vvL~~~~~s~~~i~Gy~LWhrks~~~y~~ePt~~~~~p~~r~lvs~L~P~TEY~fkvvsF~~~  433 (746)
                      .++-.+++.+|+++|++|-++..   ...+.||++.|+....... ...-.+...++.+.|.||.|.|+|.|+|.++++.
T Consensus         2 d~P~~l~v~~vt~~sv~l~W~~p---~~~~~~Y~i~~~~~~~~~~-~~~~~v~~~~~~~~i~~L~p~t~Y~~~V~a~~~~   77 (89)
T d1fnfa3           2 DSPTGIDFSDITANSFTVHWIAP---RATITGYRIRHHPEHFSGR-PREDRVPHSRNSITLTNLTPGTEYVVSIVALNGR   77 (89)
T ss_dssp             CCCEEEEEESCCSSEEEEEEECC---SSCCSEEEEEEECSCCSSC-CEEEEEETTCCEEEEESCCTTCEEEEEEEEEETT
T ss_pred             CCCCCCEEEEECCCEEEEEEEEC---CCEEEEEEEEEEECCCCCC-EEEEEECCCCCEEEECCCCCCCEEEEEEEEECCC
T ss_conf             34969899994699999999907---8888039999999989973-6999979971499989995468999999999099


Q ss_pred             CCCCCEEEEEE
Q ss_conf             66752146875
Q 004540          434 TELGRCEIWFS  444 (746)
Q Consensus       434 ~elg~~E~k~~  444 (746)
                      |+-....++..
T Consensus        78 g~s~p~~~~~~   88 (89)
T d1fnfa3          78 EESPLLIGQQS   88 (89)
T ss_dssp             EECCCEEEEEE
T ss_pred             CCCCCEEEEEE
T ss_conf             69289989978

>d1ujta_ b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA1568 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.23  E-value=7.1e-06  Score=57.99  Aligned_cols=81  Identities=16%  Similarity=0.082  Sum_probs=62.1

Q ss_pred             EECEEEEEEECCCCCCCCCCCEEEEEEEECCCC-CCCCCCEEE--ECCCCEEEEECCCCCEEEEEEEEECCCCCCCCCEE
Q ss_conf             412048999276799999861379876304878-899992443--15773137525776602459998516886675214
Q 004540          364 VRATSLTVVLGSEDPSPGNIISYTLWHRRAHEG-FPARPTCTL--FAPNTRFVVTGLCPATEYQFKVVSSNGTTELGRCE  440 (746)
Q Consensus       364 vt~tSv~vvL~~~~~s~~~i~Gy~LWhrks~~~-y~~ePt~~~--~~p~~r~lvs~L~P~TEY~fkvvsF~~~~elg~~E  440 (746)
                      |+++||.|-+.... ..+.|.||+++||..... ...++....  ....+.++|.||.|.|+|.|||.+|+..|+=-.++
T Consensus        27 ~s~tsi~v~W~~p~-~~~~i~gY~v~y~~~~~~~~~~~~~~~~v~~~~~~s~~i~~L~p~t~Y~f~V~A~n~~G~G~~S~  105 (120)
T d1ujta_          27 LTPTTVQVTWTVDR-QPQFIQGYRVMYRQTSGLQATSSWQNLDAKVPTERSAVLVNLKKGVTYEIKVRPYFNEFQGMDSE  105 (120)
T ss_dssp             CBTTEEEEEEEESS-CCSSCCEEEEEEEESSSSSTTTCCEEEECCCTTCCEEEEESCCSSEEEEEEEEEESSSCCCCCCC
T ss_pred             ECCCEEEEEECCCC-CCCCEEEEEEEEEECCCCCCCCCEEEEEECCCCEEEEEECCCCCCCEEEEEEEEEECCCCCCCCC
T ss_conf             27980899855899-99857899999543036888761289996268666999799987877899999984986968999


Q ss_pred             EE-EEC
Q ss_conf             68-750
Q 004540          441 IW-FST  445 (746)
Q Consensus       441 ~k-~~T  445 (746)
                      .. +.|
T Consensus       106 ~~~~~T  111 (120)
T d1ujta_         106 SKTVRT  111 (120)
T ss_dssp             CEEEEE
T ss_pred             CEEEEE
T ss_conf             899993

>d1j8ka_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.22  E-value=6.1e-06  Score=58.43  Aligned_cols=88  Identities=22%  Similarity=0.225  Sum_probs=68.8

Q ss_pred             CCCCCEEEEEEEECEEEEEEECCCCCCCCCCCEEEEEEEECCCC-CCCCCCEEEECCCCEEEEECCCCCEEEEEEEEECC
Q ss_conf             65674179998412048999276799999861379876304878-89999244315773137525776602459998516
Q 004540          353 VIVPNMVKFEDVRATSLTVVLGSEDPSPGNIISYTLWHRRAHEG-FPARPTCTLFAPNTRFVVTGLCPATEYQFKVVSSN  431 (746)
Q Consensus       353 l~~~~~vrFEevt~tSv~vvL~~~~~s~~~i~Gy~LWhrks~~~-y~~ePt~~~~~p~~r~lvs~L~P~TEY~fkvvsF~  431 (746)
                      |.++-.+++.+|+.+|++|-++..   ..++.||.++|+..... ...  .-.....++.+.|+||.|.|+|.|+|.+++
T Consensus         2 ~d~P~~l~v~~vt~~sv~l~W~~p---~~~~~~y~i~~~~~~~~~~~~--~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~   76 (94)
T d1j8ka_           2 IDRPKGLAFTDVDVDSIKIAWESP---QGQVSRYRVTYSSPEDGIHEL--FPAPDGEEDTAELQGLRPGSEYTVSVVALH   76 (94)
T ss_dssp             CCCCCCCEEEEEETTEEEEECCCC---SSCCSCEEEEEEETTTEEEEE--CCCCCSSCCEEEECSCCCCSEEEEEEEECS
T ss_pred             CCCCCCCEEEEECCCEEEEEEECC---CCCCCCEEEEEEEECCCCCEE--EEECCCCCCEEEECCCCCCCEEEEEEEEEE
T ss_conf             887998799995699999999288---701455099999401798569--896078704899899887999999999990


Q ss_pred             CCCCCCCEEEEEEC
Q ss_conf             88667521468750
Q 004540          432 GTTELGRCEIWFST  445 (746)
Q Consensus       432 ~~~elg~~E~k~~T  445 (746)
                      +.|+-........|
T Consensus        77 ~~g~S~p~~~~~~T   90 (94)
T d1j8ka_          77 DDMESQPLIGTQST   90 (94)
T ss_dssp             SSCCCCCEEEEEEC
T ss_pred             CCCCCCCEEEEEEE
T ss_conf             99795899989987

>d2cuma1 b.1.2.1 (A:7-99) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin-X
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.22  E-value=8.2e-06  Score=57.55  Aligned_cols=91  Identities=20%  Similarity=0.228  Sum_probs=72.9

Q ss_pred             CCCCCEEEEEEEECEEEEEEECCCCCCCCCCCEEEEEEEECCCCCCCCCCEEEECCCCEEEEECCCCCEEEEEEEEECCC
Q ss_conf             65674179998412048999276799999861379876304878899992443157731375257766024599985168
Q 004540          353 VIVPNMVKFEDVRATSLTVVLGSEDPSPGNIISYTLWHRRAHEGFPARPTCTLFAPNTRFVVTGLCPATEYQFKVVSSNG  432 (746)
Q Consensus       353 l~~~~~vrFEevt~tSv~vvL~~~~~s~~~i~Gy~LWhrks~~~y~~ePt~~~~~p~~r~lvs~L~P~TEY~fkvvsF~~  432 (746)
                      |.++--+++.+++++|+.|-++-.   ...+.||.|+|+.....   .-.-.+....+.+.|.||.|.|+|.|+|.++++
T Consensus         2 l~~P~~l~~~~~~~~sv~l~W~~p---~~~~~~Y~v~~~~~~~~---~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~   75 (93)
T d2cuma1           2 LEAPRDLEAKEVTPRTALLTWTEP---PVRPAGYLLSFHTPGGQ---TQEILLPGGITSHQLLGLFPSTSYNARLQAMWG   75 (93)
T ss_dssp             CCCCEEEEEESCCSSCEEEEEECC---SSCCSEEEEEEECTTSC---EEEEEECSSCSEEEECSCCTTCEEEEEEEEEBT
T ss_pred             CCCCCCCEEEEECCCEEEEEEECC---CCCCCCEEEEEECCCCC---CEEEEECCCCCEEEEECCCCCCEEEEEEEEEEC
T ss_conf             695998899995799899999753---14215479999734344---389997998549999075499989999999929


Q ss_pred             CCCCCCEEEEEECCCCC
Q ss_conf             86675214687507665
Q 004540          433 TTELGRCEIWFSTGSSR  449 (746)
Q Consensus       433 ~~elg~~E~k~~T~s~e  449 (746)
                      .|.-......+.|..++
T Consensus        76 ~g~s~~~~~~~tT~g~~   92 (93)
T d2cuma1          76 QSLLPPVSTSFTTGGLR   92 (93)
T ss_dssp             TBCCCCEEEEEECCCSC
T ss_pred             CCCCCCEEEEEEECCEE
T ss_conf             98987998999957816

>d1fnfa2 b.1.2.1 (A:1236-1326) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=4.8e-06  Score=59.17  Aligned_cols=90  Identities=17%  Similarity=0.189  Sum_probs=68.3

Q ss_pred             CCCCCEEEEEEEECEEEEEEECCCCCCCCCCCEEEEEEEECCCCCCCCCCEEEECCCCEEEEECCCCCEEEEEEEEECCC
Q ss_conf             65674179998412048999276799999861379876304878899992443157731375257766024599985168
Q 004540          353 VIVPNMVKFEDVRATSLTVVLGSEDPSPGNIISYTLWHRRAHEGFPARPTCTLFAPNTRFVVTGLCPATEYQFKVVSSNG  432 (746)
Q Consensus       353 l~~~~~vrFEevt~tSv~vvL~~~~~s~~~i~Gy~LWhrks~~~y~~ePt~~~~~p~~r~lvs~L~P~TEY~fkvvsF~~  432 (746)
                      +|++--+++.+++++|++|.++...  ...+.||.+.|+....... .-...+....+.+.|.||.|.|+|.|+|.++++
T Consensus         1 vPpP~~l~~~~~~~~sv~l~W~~p~--~~~~~~y~v~y~~~~~~~~-~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~   77 (91)
T d1fnfa2           1 VPPPTDLRFTNIGPDTMRVTWAPPP--SIDLTNFLVRYSPVKNEED-VAELSISPSDNAVVLTNLLPGTEYVVSVSSVYE   77 (91)
T ss_dssp             CCCCEEEEEESCCSSCEEEEEECCT--TCCCSEEEEEEEETTCTTC-CEEEEECTTCCEEEECSCCTTCEEEEEEEEEET
T ss_pred             CCCCCCEEEEEECCCEEEEEEEECC--CCCCCEEEEEEEECCCCCC-EEEEEECCCCEEEEEECEECCCEEEEEEEEECC
T ss_conf             9668965999807998999998367--8870056999998988743-799995898149999350289889999999919


Q ss_pred             CCCCCCEEEEEEC
Q ss_conf             8667521468750
Q 004540          433 TTELGRCEIWFST  445 (746)
Q Consensus       433 ~~elg~~E~k~~T  445 (746)
                      .|+--...++..|
T Consensus        78 ~g~S~p~~~~~~T   90 (91)
T d1fnfa2          78 QHESTPLRGRQKT   90 (91)
T ss_dssp             TEECCCEEEEEEC
T ss_pred             CCCCCCEEEEEEC
T ss_conf             9898898999889

>d1qr4a1 b.1.2.1 (A:1-87) Tenascin {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.20  E-value=7.7e-06  Score=57.71  Aligned_cols=85  Identities=21%  Similarity=0.243  Sum_probs=68.2

Q ss_pred             CCCEEEEEEEECEEEEEEECCCCCCCCCCCEEEEEEEECCCCCCCCCCEEEECCCCEEEEECCCCCEEEEEEEEECCCCC
Q ss_conf             67417999841204899927679999986137987630487889999244315773137525776602459998516886
Q 004540          355 VPNMVKFEDVRATSLTVVLGSEDPSPGNIISYTLWHRRAHEGFPARPTCTLFAPNTRFVVTGLCPATEYQFKVVSSNGTT  434 (746)
Q Consensus       355 ~~~~vrFEevt~tSv~vvL~~~~~s~~~i~Gy~LWhrks~~~y~~ePt~~~~~p~~r~lvs~L~P~TEY~fkvvsF~~~~  434 (746)
                      ++--+++.+++.+|++|-++..   ...+.||.++|+.....   .....+...++.+.|.||.|.|+|.|+|.+|++.+
T Consensus         2 aP~~l~v~~~t~~sv~v~W~~p---~~~~~~Y~v~~~~~~~~---~~~~~~~~~~~~~~~~~L~p~t~Y~v~V~a~~~~~   75 (87)
T d1qr4a1           2 NPKDLEVSDPTETTLSLRWRRP---VAKFDRYRLTYVSPSGK---KNEMEIPVDSTSFILRGLDAGTEYTISLVAEKGRH   75 (87)
T ss_dssp             CCEEEEEESCCSSEEEEEEECC---SSCCSEEEEEEECTTCC---EEEEEECTTCSEEEEESCCSSCEEEEEEEEESSSC
T ss_pred             CCCCCEEEEECCCEEEEEEECC---CCCCCEEEEEEECCCCC---EEEEECCCCCCEEEECCCCCCCEEEEEEEEECCCC
T ss_conf             1948699980689899999899---88745019986067762---06896799958998899970998999999990998


Q ss_pred             CCCCEEEEEEC
Q ss_conf             67521468750
Q 004540          435 ELGRCEIWFST  445 (746)
Q Consensus       435 elg~~E~k~~T  445 (746)
                      +-....+...|
T Consensus        76 ~s~~~~~~~~T   86 (87)
T d1qr4a1          76 KSKPTTIKGST   86 (87)
T ss_dssp             BCCCEEEEEEC
T ss_pred             CCCCEEEEEEC
T ss_conf             95688999990

>d1wfoa1 b.1.2.1 (A:8-124) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.19  E-value=1.9e-05  Score=55.00  Aligned_cols=90  Identities=22%  Similarity=0.328  Sum_probs=67.4

Q ss_pred             CCEEEEEEEECEEEEEEECCCCCCCCCCCEEEEEEEECCCCCCCCCCEEEECCCCEEEEECCCCCEEEEEEEEECCCCCC
Q ss_conf             74179998412048999276799999861379876304878899992443157731375257766024599985168866
Q 004540          356 PNMVKFEDVRATSLTVVLGSEDPSPGNIISYTLWHRRAHEGFPARPTCTLFAPNTRFVVTGLCPATEYQFKVVSSNGTTE  435 (746)
Q Consensus       356 ~~~vrFEevt~tSv~vvL~~~~~s~~~i~Gy~LWhrks~~~y~~ePt~~~~~p~~r~lvs~L~P~TEY~fkvvsF~~~~e  435 (746)
                      +-.++...++++||.|.+.........|.||.|+|+.....-.....-++....+.+.|.||.|.|.|.|||.+++..|.
T Consensus        24 P~~~~~~~~~~~sv~v~W~~P~~~~g~i~~Y~i~y~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~  103 (117)
T d1wfoa1          24 PMGILFPEVRTTSVRLIWQPPAAPNGIILAYQITHRLNTTTANTATVEVLAPSARQYTATGLKPESVYLFRITAQTRKGW  103 (117)
T ss_dssp             CCCCEEEEECSSEEEEECCCCSCCCSCCCEEEEEEEESSCCCSCCCEEEECTTCCEEEEESCCSSSEEEEEEEEECSSCE
T ss_pred             CCCCEEEEECCCEEEEEEECCCCCCCCEEEEEEEEEECCCCCCEEEEEECCCCEEEEEECCCCCCCEEEEEEEEECCCCC
T ss_conf             97749998359989999989877998227776465604688724768852772279998999999999999999879739


Q ss_pred             CCCEEEEEEC
Q ss_conf             7521468750
Q 004540          436 LGRCEIWFST  445 (746)
Q Consensus       436 lg~~E~k~~T  445 (746)
                      =-.++....|
T Consensus       104 g~~S~~~~~t  113 (117)
T d1wfoa1         104 GEAAEALVVT  113 (117)
T ss_dssp             EEEEEEEEEC
T ss_pred             CCCCCCEEEE
T ss_conf             8885878998

>d1fnha2 b.1.2.1 (A:93-182) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.17  E-value=1.4e-05  Score=55.91  Aligned_cols=87  Identities=21%  Similarity=0.269  Sum_probs=67.3

Q ss_pred             CCCCEEEEEEEECEEEEEEECCCCCCCCCCCEEEEEEEECCCCCCCCCCEEEECCCCEEEEECCCCCEEEEEEEEECCCC
Q ss_conf             56741799984120489992767999998613798763048788999924431577313752577660245999851688
Q 004540          354 IVPNMVKFEDVRATSLTVVLGSEDPSPGNIISYTLWHRRAHEGFPARPTCTLFAPNTRFVVTGLCPATEYQFKVVSSNGT  433 (746)
Q Consensus       354 ~~~~~vrFEevt~tSv~vvL~~~~~s~~~i~Gy~LWhrks~~~y~~ePt~~~~~p~~r~lvs~L~P~TEY~fkvvsF~~~  433 (746)
                      .++-.+++.+++++|++|.+...   ..++.||.++|+........  .-++...++.+.|.+|+|.|+|.|+|.++++.
T Consensus         3 spP~~l~v~~~~~~si~v~W~~p---~~~~~~Y~i~~~~~~~~~~~--~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~   77 (90)
T d1fnha2           3 SPPRRARVTDATETTITISWRTK---TETITGFQVDAVPANGQTPI--QRTIKPDVRSYTITGLQPGTDYKIYLYTLNDN   77 (90)
T ss_dssp             CCCEEEEEEEECSSEEEEEEECC---SSCCCCEEEEEEESSSSCCE--EEECCTTCSEEEEESCCTTCEEEEEEEEEETT
T ss_pred             CCCCCCEEEEECCCEEEEEEECC---CCCCCEEEEEEEECCCCCEE--EEECCCCCCEEEECCCCCCCEEEEEEEEEECC
T ss_conf             83988799996599999999877---89873429999973599658--99659995699967997993999999999299


Q ss_pred             CCCCCEEEEEEC
Q ss_conf             667521468750
Q 004540          434 TELGRCEIWFST  445 (746)
Q Consensus       434 ~elg~~E~k~~T  445 (746)
                      |+-....+...|
T Consensus        78 g~s~p~~~~~~T   89 (90)
T d1fnha2          78 ARSSPVVIDAST   89 (90)
T ss_dssp             EECCCEEEEEEC
T ss_pred             CCCCCEEEEEEC
T ss_conf             894899999999

>d2dn7a1 b.1.2.1 (A:8-101) Receptor-type tyrosine-protein phosphatase F, PTPRF {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Receptor-type tyrosine-protein phosphatase F, PTPRF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.16  E-value=1.4e-05  Score=55.78  Aligned_cols=88  Identities=22%  Similarity=0.250  Sum_probs=69.0

Q ss_pred             CCEEEEEEEECEEEEEEECCCCCCCCCCCEEEEEEEECCCCCCCCCCEEEECCCCEEEEECCCCCEEEEEEEEECCCCCC
Q ss_conf             74179998412048999276799999861379876304878899992443157731375257766024599985168866
Q 004540          356 PNMVKFEDVRATSLTVVLGSEDPSPGNIISYTLWHRRAHEGFPARPTCTLFAPNTRFVVTGLCPATEYQFKVVSSNGTTE  435 (746)
Q Consensus       356 ~~~vrFEevt~tSv~vvL~~~~~s~~~i~Gy~LWhrks~~~y~~ePt~~~~~p~~r~lvs~L~P~TEY~fkvvsF~~~~e  435 (746)
                      +..+....+++++++|.+.........|.||.|.||.....  ......+....+.+.|.||.|.|.|.|+|.+|+..|.
T Consensus         3 ~P~~~~~~~~~~sv~l~W~pP~~~~g~i~~Y~i~~~~~~~~--~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~   80 (94)
T d2dn7a1           3 RPTMMISTTAMNTALLQWHPPKELPGELLGYRLQYCRADEA--RPNTIDFGKDDQHFTVTGLHKGTTYIFRLAAKNRAGL   80 (94)
T ss_dssp             CCEEEEEECSTTEEEEEEECCSSCSSCCCEEEEEEEETTCS--SCEEEEEETTCCEEEEECCCTTCEEEEEEEEEETTEE
T ss_pred             CCCEEEEEEECCEEEEEEECCCCCCCCEEEEEEEEEECCCC--CCEEEECCCCCCEEEEECCCCEEEEEEEEEEECCCCC
T ss_conf             98674998768989999939988999657999999976788--7377870899649999715880299999999829759


Q ss_pred             CCCEEEEEEC
Q ss_conf             7521468750
Q 004540          436 LGRCEIWFST  445 (746)
Q Consensus       436 lg~~E~k~~T  445 (746)
                      --.++..+.|
T Consensus        81 g~~s~~~~~T   90 (94)
T d2dn7a1          81 GEEFEKEIRT   90 (94)
T ss_dssp             EEEEEEEEEC
T ss_pred             CCCCCEEEEE
T ss_conf             7884477823

>d1x5ga1 b.1.2.1 (A:8-110) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.14  E-value=1.6e-05  Score=55.39  Aligned_cols=87  Identities=22%  Similarity=0.268  Sum_probs=66.1

Q ss_pred             CCCEEEEEEEECEEEEEEECCCCCCCCCCCEEEEEEEECCCCCCCCCCEEEECCCCEEEEECCCCCEEEEEEEEECCCCC
Q ss_conf             67417999841204899927679999986137987630487889999244315773137525776602459998516886
Q 004540          355 VPNMVKFEDVRATSLTVVLGSEDPSPGNIISYTLWHRRAHEGFPARPTCTLFAPNTRFVVTGLCPATEYQFKVVSSNGTT  434 (746)
Q Consensus       355 ~~~~vrFEevt~tSv~vvL~~~~~s~~~i~Gy~LWhrks~~~y~~ePt~~~~~p~~r~lvs~L~P~TEY~fkvvsF~~~~  434 (746)
                      ++.-++...++++|++|.++........|.||+++|+.....    ..-.+....+.+.|.||.|.|+|.|+|.+++..|
T Consensus        13 ~P~~l~v~~~s~~si~l~W~~P~~~~g~i~~Y~v~~~~~~~~----~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G   88 (103)
T d1x5ga1          13 PAPNLRAYAASPTSITVTWETPVSGNGEIQNYKLYYMEKGTD----KEQDVDVSSHSYTINGLKKYTEYSFRVVAYNKHG   88 (103)
T ss_dssp             CCSSCEEEEEETTEEEEECCCCSCCSSCCSEEEEEEEETTCC----CCCCEEECSSEEEECSCCTTCEEEEEEEEECSSC
T ss_pred             CCCCCEEEECCCCEEEEEEECCCCCCCCEEEEEEEEEECCCC----EEEEEECCCCEEECCCCCCCCEEEEEEEEECCCC
T ss_conf             599749997458989999989867996488899999727984----1687751124786389999989999999986985


Q ss_pred             CCCC-E-EEEEECC
Q ss_conf             6752-1-4687507
Q 004540          435 ELGR-C-EIWFSTG  446 (746)
Q Consensus       435 elg~-~-E~k~~T~  446 (746)
                      . |. + .+.+.|.
T Consensus        89 ~-g~~S~~v~v~T~  101 (103)
T d1x5ga1          89 P-GVSTPDVAVRTL  101 (103)
T ss_dssp             C-CCBCCCCCEECC
T ss_pred             C-CCCCCCEEEECC
T ss_conf             9-189899899869

>d2vkwa2 b.1.2.1 (A:601-693) Neural cell adhesion molecule 1, NCAM {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neural cell adhesion molecule 1, NCAM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=1.8e-05  Score=55.17  Aligned_cols=89  Identities=20%  Similarity=0.233  Sum_probs=71.7

Q ss_pred             CCEEEEEEEECEEEEEEECCCCCCCCCCCEEEEEEEECCCCCCCCCCEEEECCCCEEEEECCCCCEEEEEEEEECCCCCC
Q ss_conf             74179998412048999276799999861379876304878899992443157731375257766024599985168866
Q 004540          356 PNMVKFEDVRATSLTVVLGSEDPSPGNIISYTLWHRRAHEGFPARPTCTLFAPNTRFVVTGLCPATEYQFKVVSSNGTTE  435 (746)
Q Consensus       356 ~~~vrFEevt~tSv~vvL~~~~~s~~~i~Gy~LWhrks~~~y~~ePt~~~~~p~~r~lvs~L~P~TEY~fkvvsF~~~~e  435 (746)
                      +-.+++.+++.+||+|.+...+.....|.||.+.|+......  .....+...++.+.|.||.|.|+|.|||.+++..|.
T Consensus         4 P~~~~~~~~~~~sv~l~W~~p~~~~~~I~~Y~i~~~~~~~~~--~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~N~~G~   81 (93)
T d2vkwa2           4 PKLEGQMGEDGNSIKVNLIKQDDGGSPIRHYLVRYRALSSEW--KPEIRLPSGSDHVMLKSLDWNAEYEVYVVAENQQGK   81 (93)
T ss_dssp             CEEEEEECTTSSCEEEEEECCCCTTSCCCEEEEEEEETTSCC--CCCEEECTTCCEEEECSCCTTCEEEEEEEEEETTEE
T ss_pred             CCCCEEEECCCCEEEEEEECCCCCCCCEEEEEEEEEECCCCE--EEEEECCCCCEEEEEECCCCCEEEEEEEEEECCCCC
T ss_conf             841886875899999996089777576389999753157520--022411278529999455432379999999969979


Q ss_pred             CCCEEEEEECC
Q ss_conf             75214687507
Q 004540          436 LGRCEIWFSTG  446 (746)
Q Consensus       436 lg~~E~k~~T~  446 (746)
                      =-.+++.+.|.
T Consensus        82 s~ps~~~~~T~   92 (93)
T d2vkwa2          82 SKAAHFVFRTA   92 (93)
T ss_dssp             CCCEEEEEECC
T ss_pred             CCCEEEEEEEC
T ss_conf             38991899905

>d1fnha1 b.1.2.1 (A:3-92) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.12  E-value=2.4e-05  Score=54.27  Aligned_cols=88  Identities=22%  Similarity=0.227  Sum_probs=71.9

Q ss_pred             CCCCEEEEEEEECEEEEEEECCCCCCCCCCCEEEEEEEECCCCCCCCCCEEEECCCCEEEEECCCCCEEEEEEEEECCCC
Q ss_conf             56741799984120489992767999998613798763048788999924431577313752577660245999851688
Q 004540          354 IVPNMVKFEDVRATSLTVVLGSEDPSPGNIISYTLWHRRAHEGFPARPTCTLFAPNTRFVVTGLCPATEYQFKVVSSNGT  433 (746)
Q Consensus       354 ~~~~~vrFEevt~tSv~vvL~~~~~s~~~i~Gy~LWhrks~~~y~~ePt~~~~~p~~r~lvs~L~P~TEY~fkvvsF~~~  433 (746)
                      |++--+++.+|+++|++|-+...   ...+.+|.++|+..... .......+....+.+.|.||.|.|+|.|+|.++++.
T Consensus         1 PpP~~l~~~~v~~~si~l~W~~p---~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~   76 (90)
T d1fnha1           1 PAPTDLKFTQVTPTSLSAQWTPP---NVQLTGYRVRVTPKEKT-GPMKEINLAPDSSSVVVSGLMVATKYEVSVYALKDT   76 (90)
T ss_dssp             CCCEEEEEEEECSSCEEEEEECC---SSCCSEEEEEEEESSSC-SCCCEEEECTTCCEEEECSCCTTCEEEEEEEEEETT
T ss_pred             CCCCCEEEEEECCCEEEEEEECC---CEECCCEEEEEEEEECC-CCEEEEEECCCCEEEEEECCCCCEEEEEEEEEEECC
T ss_conf             97989899994699999999816---34255218899851079-966999827998599990525764999999999299


Q ss_pred             CCCCCEEEEEEC
Q ss_conf             667521468750
Q 004540          434 TELGRCEIWFST  445 (746)
Q Consensus       434 ~elg~~E~k~~T  445 (746)
                      |+--..++.+.|
T Consensus        77 g~s~~~~~~~~T   88 (90)
T d1fnha1          77 LTSRPAQGVVTT   88 (90)
T ss_dssp             EECCCEEEEEEC
T ss_pred             CCCCCEEEEEEC
T ss_conf             896899188793

>d2djsa1 b.1.2.1 (A:8-102) Ephrin type-B receptor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-B receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.08  E-value=3.2e-05  Score=53.29  Aligned_cols=87  Identities=15%  Similarity=0.199  Sum_probs=67.8

Q ss_pred             CEEEEEEEECEEEEEEECCCCCCCCCCCEEEEEEEECCCCCCCCCCEEEECCCCEEEEECCCCCEEEEEEEEECCCCCCC
Q ss_conf             41799984120489992767999998613798763048788999924431577313752577660245999851688667
Q 004540          357 NMVKFEDVRATSLTVVLGSEDPSPGNIISYTLWHRRAHEGFPARPTCTLFAPNTRFVVTGLCPATEYQFKVVSSNGTTEL  436 (746)
Q Consensus       357 ~~vrFEevt~tSv~vvL~~~~~s~~~i~Gy~LWhrks~~~y~~ePt~~~~~p~~r~lvs~L~P~TEY~fkvvsF~~~~el  436 (746)
                      ..++..+++++||+|-+...+.....|.+|.+.|+.....  .....+....++.+.|.||.|.|+|.|||.+++..|. 
T Consensus         5 ~~l~~~~~t~~si~l~W~~p~~~~g~i~~Y~v~~~~~~~~--~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~-   81 (95)
T d2djsa1           5 PIMHQVSATMRSITLSWPQPEQPNGIILDYEIRYYEKEHN--EFNSSMARSQTNTARIDGLRPGMVYVVQVRARTVAGY-   81 (95)
T ss_dssp             SCCEEEEECSSEEEEECCCCSCCSSCEEEEEEEEEETTSC--STTCEEEEESSSEEEEESCCTTCEEEEEEEEEESSCE-
T ss_pred             CCCEEEEECCCEEEEEEEECCCCCCCEEEEEEEEEEECCC--CCEEEEECCCCCEEEEEECCCCCEEEEEEEEECCCCC-
T ss_conf             8068996058879999987877995068852122210167--5215751687358999105874689999999829879-


Q ss_pred             CCE--EEEEECC
Q ss_conf             521--4687507
Q 004540          437 GRC--EIWFSTG  446 (746)
Q Consensus       437 g~~--E~k~~T~  446 (746)
                      |.+  .+.+.|.
T Consensus        82 g~~S~~~~~~T~   93 (95)
T d2djsa1          82 GKFSGKMCFQTL   93 (95)
T ss_dssp             EEECCCEEEECC
T ss_pred             CCCCCCEEEEEC
T ss_conf             799998999918

>d1fnfa1 b.1.2.1 (A:1142-1235) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.08  E-value=2.1e-05  Score=54.66  Aligned_cols=86  Identities=17%  Similarity=0.169  Sum_probs=62.9

Q ss_pred             CCCCEEEEEEEECEE-EEEEECCCCCCCCCCCEEEEEEEECCCCCCCCCCEEEECCCCEEEEECCCCCEEEEEEEEECCC
Q ss_conf             567417999841204-8999276799999861379876304878899992443157731375257766024599985168
Q 004540          354 IVPNMVKFEDVRATS-LTVVLGSEDPSPGNIISYTLWHRRAHEGFPARPTCTLFAPNTRFVVTGLCPATEYQFKVVSSNG  432 (746)
Q Consensus       354 ~~~~~vrFEevt~tS-v~vvL~~~~~s~~~i~Gy~LWhrks~~~y~~ePt~~~~~p~~r~lvs~L~P~TEY~fkvvsF~~  432 (746)
                      .++..+++..++.+| ++|-+...  ...+|.||++.|+.........-+-.+...++.+.|.||.|.|+|.|+|.++++
T Consensus         3 ~PP~~l~v~~~~~ts~i~v~W~~p--~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~v~V~a~~~   80 (94)
T d1fnfa1           3 SPPTNLHLEANPDTGVLTVSWERS--TTPDITGYRITTTPTNGQQGNSLEEVVHADQSSCTFDNLSPGLEYNVSVYTVKD   80 (94)
T ss_dssp             CCCEEEEEEECSSSSCEEEEEECC--SCSSCCEEEEEEEETTTCSSCCEEEEECTTCCEEECCCCCTTSCEEEEEEEEET
T ss_pred             CCCCCCEEEEECCCCEEEEEEECC--CCCCEEEEEEEEEEECCCCCEEEEEEECCCCCEEEECCCCCCCEEEEEEEEECC
T ss_conf             968374999965998899996399--998755899999974046750799993898039999998899979999999949


Q ss_pred             CCCCCCEEE
Q ss_conf             866752146
Q 004540          433 TTELGRCEI  441 (746)
Q Consensus       433 ~~elg~~E~  441 (746)
                      .|+-.....
T Consensus        81 ~g~s~p~s~   89 (94)
T d1fnfa1          81 DKESVPISD   89 (94)
T ss_dssp             TEECCCEEE
T ss_pred             CCEECCEEE
T ss_conf             989589999

>d1x5fa1 b.1.2.1 (A:8-114) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.04  E-value=3.8e-05  Score=52.78  Aligned_cols=94  Identities=17%  Similarity=0.220  Sum_probs=67.2

Q ss_pred             CCCC-CCEEEEEEEECEEEEEEECCCC-CCCCCCCEEEEEEEECCCCCCCCCCEEEECCCCEEEEECCCCCEEEEEEEEE
Q ss_conf             7656-7417999841204899927679-9999861379876304878899992443157731375257766024599985
Q 004540          352 NVIV-PNMVKFEDVRATSLTVVLGSED-PSPGNIISYTLWHRRAHEGFPARPTCTLFAPNTRFVVTGLCPATEYQFKVVS  429 (746)
Q Consensus       352 ~l~~-~~~vrFEevt~tSv~vvL~~~~-~s~~~i~Gy~LWhrks~~~y~~ePt~~~~~p~~r~lvs~L~P~TEY~fkvvs  429 (746)
                      .+|. +--++..++++++|+|-+.... .....|.+|+++||..... ......+.....+.++|.+|.|.|+|.|||.+
T Consensus         9 ~~P~~P~~l~~~~~~~~sv~lsW~~P~~~~~~~i~~Y~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~L~p~t~Y~~rV~A   87 (107)
T d1x5fa1           9 PLPSAPRDVVASLVSTRFIKLTWRTPASDPHGDNLTYSVFYTKEGIA-RERVENTSHPGEMQVTIQNLMPATVYIFRVMA   87 (107)
T ss_dssp             CCCCCCEEEEEEEECSSCEEEEEECCSSCSSCCSSEEEEEEEETTCC-CCEEEECSSTTCSEEEECSCCTTCEEEEEEEE
T ss_pred             CCCCCCCCCEEEEECCCEEEEEEECCCCCCCCCEEEEEEEEEECCCC-CEEEEEEECCCCCEEEECCCCCCCEEEEEEEE
T ss_conf             98967986299994599899987798648998567899999837997-31899981788439995688999899999999


Q ss_pred             CCCCCCCCCE-EEEEECC
Q ss_conf             1688667521-4687507
Q 004540          430 SNGTTELGRC-EIWFSTG  446 (746)
Q Consensus       430 F~~~~elg~~-E~k~~T~  446 (746)
                      ++..|.--.+ ++.+.|.
T Consensus        88 ~n~~G~g~~S~~i~v~T~  105 (107)
T d1x5fa1          88 QNKHGSGESSAPLRVETQ  105 (107)
T ss_dssp             ECSSCEEEECCCEEEECC
T ss_pred             EECCCCCCCCCCEEEECC
T ss_conf             809879089888888879

>d1wfna1 b.1.2.1 (A:8-113) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.03  E-value=2.9e-05  Score=53.58  Aligned_cols=88  Identities=19%  Similarity=0.195  Sum_probs=66.2

Q ss_pred             CCCEEEEEEEECEEEEEEECCCCCCCCCCCEEEEEEEECCCCCCCCCCEEEECCCCEEEEECCCCCEEEEEEEEECCCCC
Q ss_conf             67417999841204899927679999986137987630487889999244315773137525776602459998516886
Q 004540          355 VPNMVKFEDVRATSLTVVLGSEDPSPGNIISYTLWHRRAHEGFPARPTCTLFAPNTRFVVTGLCPATEYQFKVVSSNGTT  434 (746)
Q Consensus       355 ~~~~vrFEevt~tSv~vvL~~~~~s~~~i~Gy~LWhrks~~~y~~ePt~~~~~p~~r~lvs~L~P~TEY~fkvvsF~~~~  434 (746)
                      ++-.+++.+++.+||.|.+.........|.||+|.|+..... .......+....+.+.|+||.|.|.|.|+|.+++..|
T Consensus        13 ~p~~l~~~~~~~~sv~l~W~~P~~~ng~i~~Y~i~~~~~~~~-~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G   91 (106)
T d1wfna1          13 PVGHLSFSEILDTSLKVSWQEPGEKNGILTGYRISWEEYNRT-NTRVTHYLPNVTLEYRVTGLTALTTYTIEVAAMTSKG   91 (106)
T ss_dssp             CCSCCEEESCCSSEEEEECCCCTTCCSCCCEEEEEEEESSCG-GGCCCEEECSSCCEEEEESCCTTCEEEEEEEEECSSC
T ss_pred             CCCCCEEEEECCCEEEEEEECCCCCCCCEEEEEEEEEECCCC-CCEEEEECCCCEEEEEECCCCCCCEEEEEEEEECCCC
T ss_conf             999869998349989999989987998587579999989898-4157875389800899735899978999999987987


Q ss_pred             CCCCEEEEE
Q ss_conf             675214687
Q 004540          435 ELGRCEIWF  443 (746)
Q Consensus       435 elg~~E~k~  443 (746)
                      +=-.++...
T Consensus        92 ~g~~s~~~~  100 (106)
T d1wfna1          92 QGQVSASTI  100 (106)
T ss_dssp             EEEEEEEEE
T ss_pred             CCCCCCCEE
T ss_conf             968958879

>d1fnaa_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.02  E-value=2.1e-05  Score=54.62  Aligned_cols=78  Identities=15%  Similarity=0.223  Sum_probs=61.5

Q ss_pred             EEEEEEECEEEEEEECCCCCCCCCCCEEEEEEEECCCCCCCCCCEEEECCCCEEEEECCCCCEEEEEEEEECCCCCCCCC
Q ss_conf             79998412048999276799999861379876304878899992443157731375257766024599985168866752
Q 004540          359 VKFEDVRATSLTVVLGSEDPSPGNIISYTLWHRRAHEGFPARPTCTLFAPNTRFVVTGLCPATEYQFKVVSSNGTTELGR  438 (746)
Q Consensus       359 vrFEevt~tSv~vvL~~~~~s~~~i~Gy~LWhrks~~~y~~ePt~~~~~p~~r~lvs~L~P~TEY~fkvvsF~~~~elg~  438 (746)
                      ++..+++++|++|-++..   ..++.||+|+|+....... .-.-.+..+++.+.|.||.|.|+|.|+|.+++..|+-..
T Consensus         3 l~v~~~t~~sv~l~W~~p---~~~~~~Y~v~~~~~~~~~~-~~~~~~~~~~t~~~l~~L~p~t~Y~~~V~a~~~~g~s~~   78 (91)
T d1fnaa_           3 LEVVAATPTSLLISWDAP---AVTVRYYRITYGETGGNSP-VQEFTVPGSKSTATISGLKPGVDYTITVYAVTGRGDSPA   78 (91)
T ss_dssp             CEEEEECSSCEEEECCCC---SSCCSEEEEEEEETTCCSC-CEEEEEETTCCEEEECSCCTTCEEEEEEEEECTTCCSSC
T ss_pred             CEEEEECCCEEEEEEECC---CEEECEEEEEEECCCCCCE-EEEEEECCCCCEEEECCCCCCCEEEEEEEEEECCCCCCC
T ss_conf             899995787999899926---5070678999870799960-577995897139995898899999999999929964888


Q ss_pred             EE
Q ss_conf             14
Q 004540          439 CE  440 (746)
Q Consensus       439 ~E  440 (746)
                      ..
T Consensus        79 ~s   80 (91)
T d1fnaa_          79 SS   80 (91)
T ss_dssp             SC
T ss_pred             CC
T ss_conf             57

>d1x4ya1 b.1.2.1 (A:8-108) Brother of CDO precursor (BOC) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Brother of CDO precursor (BOC)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.99  E-value=4.1e-05  Score=52.58  Aligned_cols=93  Identities=14%  Similarity=0.090  Sum_probs=72.4

Q ss_pred             CCCCEEEEEEEECEEEEEEECCCCC--CCCCCCEEEEEEEECCCC-CCCCCCEEEECCCCEEEEECCCCCEEEEEEEEEC
Q ss_conf             5674179998412048999276799--999861379876304878-8999924431577313752577660245999851
Q 004540          354 IVPNMVKFEDVRATSLTVVLGSEDP--SPGNIISYTLWHRRAHEG-FPARPTCTLFAPNTRFVVTGLCPATEYQFKVVSS  430 (746)
Q Consensus       354 ~~~~~vrFEevt~tSv~vvL~~~~~--s~~~i~Gy~LWhrks~~~-y~~ePt~~~~~p~~r~lvs~L~P~TEY~fkvvsF  430 (746)
                      .++-.++.+.|++++++|.+....+  ....|.||.+.|+..... ....-+..+..+...+.|.||.|.|.|.|||.+|
T Consensus         3 ~~P~~~~~~~~s~tsi~v~W~~~~~~~~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~v~a~   82 (101)
T d1x4ya1           3 AGPYITFTDAVNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDSDYKKDMVEGDRYWHSISHLQPETSYDIKMQCF   82 (101)
T ss_dssp             SCCEEEEEECSSSSCEEEEEECCCTTSCCCCCCEEEEEECCTTSCSGGGCCCEEEETTCCEEEECSCCTTCEEEEEEEEE
T ss_pred             CCCCCCEEEEECCCEEEEEEECCCCCCCCCCEEEEEEEEEECCCEEEEEEEEEEECCCEEEEEECCCCCCCEEEEEEEEE
T ss_conf             88815399997599799998568555660334778997521100001001588771880299995887997999999998


Q ss_pred             CCCCCCCCEE-EEEECC
Q ss_conf             6886675214-687507
Q 004540          431 NGTTELGRCE-IWFSTG  446 (746)
Q Consensus       431 ~~~~elg~~E-~k~~T~  446 (746)
                      +..|+=--++ +.+.|+
T Consensus        83 n~~G~s~~S~~~~~~T~   99 (101)
T d1x4ya1          83 NEGGESEFSNVMICETK   99 (101)
T ss_dssp             CTTCCCCCCCCEEEECC
T ss_pred             CCCCCCCCCCCEEEECC
T ss_conf             29979899886799926

>d1qg3a1 b.1.2.1 (A:1126-1217) Integrin beta-4 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Integrin beta-4 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.96  E-value=5.1e-05  Score=51.85  Aligned_cols=88  Identities=14%  Similarity=0.100  Sum_probs=67.8

Q ss_pred             CCCCCEEEEEEEECEEEEEEECCCCCCCCCCCEEEEEEEECCCCCCCCCCEEEECCCCEEEEECCCCCEEEEEEEEECCC
Q ss_conf             65674179998412048999276799999861379876304878899992443157731375257766024599985168
Q 004540          353 VIVPNMVKFEDVRATSLTVVLGSEDPSPGNIISYTLWHRRAHEGFPARPTCTLFAPNTRFVVTGLCPATEYQFKVVSSNG  432 (746)
Q Consensus       353 l~~~~~vrFEevt~tSv~vvL~~~~~s~~~i~Gy~LWhrks~~~y~~ePt~~~~~p~~r~lvs~L~P~TEY~fkvvsF~~  432 (746)
                      |.++.-++.+.++++||.|-++..   ...+.||.+.|+.....  ..-...+....+.+.|.+|.|.|+|.|||.+++.
T Consensus         2 l~aP~n~~~~~~s~~si~l~W~~p---~~~~~~Y~i~y~~~~~~--~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~   76 (92)
T d1qg3a1           2 LGAPQNPNAKAAGSRKIHFNWLPP---SGKPMGYRVKYWIQGDS--ESEAHLLDSKVPSVELTNLYPYCDYEMKVCAYGA   76 (92)
T ss_dssp             CCCCEEEEEEECSTTCEEEEEECC---SSCCCEEEEEEEETTSC--GGGCEEEEESSSEEEECSCCTTCEEEEEEEEECS
T ss_pred             CCCCCCCEEEECCCCEEEEEEEEC---CCCCCCEEEEEEECCCC--CCEEEEECCCCCEEEECCCCCCCEEEEEEEEEEC
T ss_conf             885998899990589999999826---78865338863102245--6579994688249997788889389999999909


Q ss_pred             CCCCCCE-EEEEEC
Q ss_conf             8667521-468750
Q 004540          433 TTELGRC-EIWFST  445 (746)
Q Consensus       433 ~~elg~~-E~k~~T  445 (746)
                      .|.=-.+ .+.+.|
T Consensus        77 ~G~g~~S~~~~~~T   90 (92)
T d1qg3a1          77 QGEGPYSSLVSCRT   90 (92)
T ss_dssp             SCBCCCCCCEEEEC
T ss_pred             CCCCCCCCCEEEEC
T ss_conf             95728989879884

>d1tdqa1 b.1.2.1 (A:1-93) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.93  E-value=9.1e-05  Score=50.06  Aligned_cols=88  Identities=20%  Similarity=0.196  Sum_probs=70.2

Q ss_pred             CCCCEEEEEEEECEEEEEEECCCCCCCCCCCEEEEEEEECCCCCCCCCCEEEECCCCEEEEECCCCCEEEEEEEEECCCC
Q ss_conf             56741799984120489992767999998613798763048788999924431577313752577660245999851688
Q 004540          354 IVPNMVKFEDVRATSLTVVLGSEDPSPGNIISYTLWHRRAHEGFPARPTCTLFAPNTRFVVTGLCPATEYQFKVVSSNGT  433 (746)
Q Consensus       354 ~~~~~vrFEevt~tSv~vvL~~~~~s~~~i~Gy~LWhrks~~~y~~ePt~~~~~p~~r~lvs~L~P~TEY~fkvvsF~~~  433 (746)
                      .++-.+++.+|+++|++|-+...   ...+.||++-|+....... .-...+..+.+++.+.||.|.|+|.|+|.++++.
T Consensus         5 ~~P~~l~v~~v~~~si~v~W~~p---~~~~~~y~i~~~~~~~~~~-~~~~~~~~~~~~~~i~~L~p~t~Y~v~V~a~~~~   80 (93)
T d1tdqa1           5 DGPTQILVRDVSDTVAFVEWTPP---RAKVDFILLKYGLVGGEGG-KTTFRLQPPLSQYSVQALRPGSRYEVSISAVRGT   80 (93)
T ss_dssp             CCCEEEEEEEECSSCEEEEEECC---SSCCSEEEEEEEESSSSCC-CEEEEECTTCSEEEECSCCTTCEEEEEEEEEETT
T ss_pred             CCCCCCEEEEECCCEEEEEEECC---CCCCCCEEEEEEECCCCCE-EEEEEECCCCEEEEEECCCCCEEEEEEEEEEECC
T ss_conf             84999799992799899999825---3677844899885147402-3579948985499990843456999999999399


Q ss_pred             CCCCCEEEEEEC
Q ss_conf             667521468750
Q 004540          434 TELGRCEIWFST  445 (746)
Q Consensus       434 ~elg~~E~k~~T  445 (746)
                      |+-...+..+.|
T Consensus        81 g~s~~~~~~~tT   92 (93)
T d1tdqa1          81 NESDASSTQFTT   92 (93)
T ss_dssp             EECCCEEEEEEC
T ss_pred             CCCCCEEEEEEC
T ss_conf             795788799989

>d1x4za1 b.1.2.1 (A:8-115) Brother of CDO precursor (BOC) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Brother of CDO precursor (BOC)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.91  E-value=3.8e-05  Score=52.75  Aligned_cols=79  Identities=18%  Similarity=0.103  Sum_probs=59.1

Q ss_pred             CEEEEEEEECEEEEEEECCCCCCCCCCCEEEEEEEECCCC-CCCCCCEEEECCCCEEEEECCCCCEEEEEEEEECCCCCC
Q ss_conf             4179998412048999276799999861379876304878-899992443157731375257766024599985168866
Q 004540          357 NMVKFEDVRATSLTVVLGSEDPSPGNIISYTLWHRRAHEG-FPARPTCTLFAPNTRFVVTGLCPATEYQFKVVSSNGTTE  435 (746)
Q Consensus       357 ~~vrFEevt~tSv~vvL~~~~~s~~~i~Gy~LWhrks~~~-y~~ePt~~~~~p~~r~lvs~L~P~TEY~fkvvsF~~~~e  435 (746)
                      -.+.+.+++++||+|-+.-.......|.||.|-|+..... .-..-...+...++.+.|.||.|.|+|.|||.+++..|.
T Consensus        15 ~~~~v~~~~~~sv~l~W~p~~~~g~~I~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~L~p~t~Y~frV~A~N~~G~   94 (108)
T d1x4za1          15 DRPTISTASETSVYVTWIPRGNGGFPIQSFRVEYKKLKKVGDWILATSAIPPSRLSVEITGLEKGISYKFRVRALNMLGE   94 (108)
T ss_dssp             CCCEEEECCSSEEEEECCCCCCTTSCCCEEEEEEEESSSCCCCEEEEEEECTTCCEEEEESCCTTCEEEEEEEEEETTEE
T ss_pred             CCCEEEECCCCEEEEEEECCCCCCCCCEEEEEEEEECCCCCCEEEEEEEECCCCCEEEECCCCCCCEEEEEEEEECCCCC
T ss_conf             99899975499899999889889980179999998368998648977752277168997998999999999999889839

>d1x5ka1 b.1.2.1 (A:8-118) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.89  E-value=5.2e-05  Score=51.82  Aligned_cols=89  Identities=16%  Similarity=0.181  Sum_probs=66.8

Q ss_pred             EEEEEEEECEEEEEEECCCCCCCCCCCEEEEEEEECCCC-CCCCCCEEEECCCCEEEEECCCCCEEEEEEEEECCCCCCC
Q ss_conf             179998412048999276799999861379876304878-8999924431577313752577660245999851688667
Q 004540          358 MVKFEDVRATSLTVVLGSEDPSPGNIISYTLWHRRAHEG-FPARPTCTLFAPNTRFVVTGLCPATEYQFKVVSSNGTTEL  436 (746)
Q Consensus       358 ~vrFEevt~tSv~vvL~~~~~s~~~i~Gy~LWhrks~~~-y~~ePt~~~~~p~~r~lvs~L~P~TEY~fkvvsF~~~~el  436 (746)
                      .+...++++++|+|-+.........|.+|.+.|+..... ........+...++.+.|.||.|.|+|.|||.+++..|.=
T Consensus        19 ~v~~~~~~~~sv~v~W~~P~~~~g~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g   98 (111)
T d1x5ka1          19 TVVSKEGKPKTIIVNWQPPSEANGKITGYIIYYSTDVNAEIHDWVIEPVVGNRLTHQIQELTLDTPYYFKIQARNSKGMG   98 (111)
T ss_dssp             EEEECSSCTTCEEEEEECCSCCSSCCCEEEEEEESCSSSCTTTSEEEEESTTCSEEEECSCCSSSEEEEEEEEECSSCBC
T ss_pred             EEEEECCCCCEEEEEEECCCCCCCCEEEEEEEEEECCCCCCCEEEEEEECCCEEEEEECCCCCCCEEEEEEEEECCCCCC
T ss_conf             99996489998999997566578844336886641599875136999727982499988999998999999998098795


Q ss_pred             CCEE-EEEECC
Q ss_conf             5214-687507
Q 004540          437 GRCE-IWFSTG  446 (746)
Q Consensus       437 g~~E-~k~~T~  446 (746)
                      -.++ +.+.|.
T Consensus        99 ~~S~~v~~~T~  109 (111)
T d1x5ka1          99 PMSEAVQFRTP  109 (111)
T ss_dssp             CCCCCEEEECC
T ss_pred             CCCCCEEEECC
T ss_conf             89898887899

>d1uema_ b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA1568 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.89  E-value=3.7e-05  Score=52.89  Aligned_cols=83  Identities=22%  Similarity=0.206  Sum_probs=60.3

Q ss_pred             CCC-CCCEEEEEEEECEEEEEEECCCCCCCCCCCEEEEEEEECCCCCCCCCCEEEECCCCEEEEECCCCCEEEEEEEEEC
Q ss_conf             765-6741799984120489992767999998613798763048788999924431577313752577660245999851
Q 004540          352 NVI-VPNMVKFEDVRATSLTVVLGSEDPSPGNIISYTLWHRRAHEGFPARPTCTLFAPNTRFVVTGLCPATEYQFKVVSS  430 (746)
Q Consensus       352 ~l~-~~~~vrFEevt~tSv~vvL~~~~~s~~~i~Gy~LWhrks~~~y~~ePt~~~~~p~~r~lvs~L~P~TEY~fkvvsF  430 (746)
                      .+| ++-.+++.+++++||+|-+.-.......|.+|.++|+.....-. -.+.....+.+++.|.+|.|.|.|.|||.++
T Consensus        14 ~~P~pP~~~~v~~~~~~sv~l~W~p~~~~~~~i~~Y~v~~~~~~~~~~-~~~~~~~~~~~~~~v~~L~p~t~Y~frV~A~   92 (117)
T d1uema_          14 DLPGPPSKPQVTDVTKNSVTLSWQPGTPGTLPASAYIIEAFSQSVSNS-WQTVANHVKTTLYTVRGLRPNTIYLFMVRAI   92 (117)
T ss_dssp             CSCBCCCCCEEEEECSSCEEEECCCCBCSSSCCCEEEEEEEETTTEEE-EEEEEEEECSSEEEECSCCTTCEEEEEEEEE
T ss_pred             CCCCCCCCCEEEECCCCEEEEEEECCCCCCCCEEEEEEEEECCCCCEE-EEEECCCCCCCCCEECCCCCCCEEEEEEEEE
T ss_conf             169399987899822998999998998689973899999951688613-6884145531112689999998899999998


Q ss_pred             CCCCC
Q ss_conf             68866
Q 004540          431 NGTTE  435 (746)
Q Consensus       431 ~~~~e  435 (746)
                      +..|.
T Consensus        93 N~~G~   97 (117)
T d1uema_          93 NPQGL   97 (117)
T ss_dssp             ETTEE
T ss_pred             ECCCC
T ss_conf             59838

>d1x5za1 b.1.2.1 (A:8-109) Receptor-type tyrosine-protein phosphatase delta, PTPRD {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Receptor-type tyrosine-protein phosphatase delta, PTPRD
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.89  E-value=5.6e-05  Score=51.56  Aligned_cols=85  Identities=24%  Similarity=0.316  Sum_probs=65.0

Q ss_pred             CCCEEEEEEEECEEEEEEECCCCCCCCCCCEEEEEEEECCCCCCCCCCEEEECCCCEEEEECCCCCEEEEEEEEECCCCC
Q ss_conf             67417999841204899927679999986137987630487889999244315773137525776602459998516886
Q 004540          355 VPNMVKFEDVRATSLTVVLGSEDPSPGNIISYTLWHRRAHEGFPARPTCTLFAPNTRFVVTGLCPATEYQFKVVSSNGTT  434 (746)
Q Consensus       355 ~~~~vrFEevt~tSv~vvL~~~~~s~~~i~Gy~LWhrks~~~y~~ePt~~~~~p~~r~lvs~L~P~TEY~fkvvsF~~~~  434 (746)
                      ++..++...++++|++|-+.-.  ..+.|.||.|.|+.....   ........+.+.+.|.||.|.|+|.|||.+++..|
T Consensus        13 ~P~~~~~~~~~~~si~l~W~~p--~~~~i~~Y~i~y~~~~~~---~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G   87 (102)
T d1x5za1          13 QPLNFKAEPESETSILLSWTPP--RSDTIANYELVYKDGEHG---EEQRITIEPGTSYRLQGLKPNSLYYFRLAARSPQG   87 (102)
T ss_dssp             CCEEEEEECSSSSEEEEEEECC--SCCCCCEEEECBEESSSC---CCBCCEECSSSEEEEECCCTTCEEEECEEEECSSC
T ss_pred             CCCCEEEEECCCCEEEEEEECC--CCCCCCCEEEEEEECCCC---CEEEEECCCCCEEEECCCCCCCEEEEEEEEECCCC
T ss_conf             8987099971399799999899--999820037899827999---35889738857899899989999999999983997


Q ss_pred             CCCCE--EEEEEC
Q ss_conf             67521--468750
Q 004540          435 ELGRC--EIWFST  445 (746)
Q Consensus       435 elg~~--E~k~~T  445 (746)
                      . |.+  ++.+.|
T Consensus        88 ~-g~~S~~v~~~T   99 (102)
T d1x5za1          88 L-GASTAEISART   99 (102)
T ss_dssp             E-EEECCCEEEEC
T ss_pred             E-ECCCCCEEEEC
T ss_conf             8-07988779895

>d1x5la1 b.1.2.1 (A:8-105) Ephrin type-A receptor 8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-A receptor 8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.88  E-value=4.1e-05  Score=52.58  Aligned_cols=89  Identities=26%  Similarity=0.345  Sum_probs=67.3

Q ss_pred             CCCEEEEEEEECEEEEEEECCCCCCCCCCCEEEEEEEECCCCCCCCCCEEEECCCCEEEEECCCCCEEEEEEEEECCCCC
Q ss_conf             67417999841204899927679999986137987630487889999244315773137525776602459998516886
Q 004540          355 VPNMVKFEDVRATSLTVVLGSEDPSPGNIISYTLWHRRAHEGFPARPTCTLFAPNTRFVVTGLCPATEYQFKVVSSNGTT  434 (746)
Q Consensus       355 ~~~~vrFEevt~tSv~vvL~~~~~s~~~i~Gy~LWhrks~~~y~~ePt~~~~~p~~r~lvs~L~P~TEY~fkvvsF~~~~  434 (746)
                      ++-.++++.++++|++|.+.........|.+|.|+|+.......  -.-++....+.+.|+||.|.|.|.|+|.++++.|
T Consensus         6 ~p~~~~~~~~s~~si~v~W~~P~~~~g~i~~Y~v~y~~~~~~~~--~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~G   83 (98)
T d1x5la1           6 QVVVIRQERAGQTSVSLLWQEPEQPNGIILEYEIKYYEKDKEMQ--SYSTLKAVTTRATVSGLKPGTRYVFQVRARTSAG   83 (98)
T ss_dssp             CCCCEECSCBCSSCEEEEECCCSCCCSCCCEEEEEEEESSSCCS--SCEEEEESSSEEEECSCCTTCEEEECEEEEETTE
T ss_pred             CCCCEEEEECCCCEEEEEEECCCCCCCCEEEEEEEEECCCCCCE--EEEEECCCCEEEEECCCCCCCEEEEEEEEECCCC
T ss_conf             99841999603998999998998899888999987531434640--3578657703999999999989999999982987


Q ss_pred             CCCC--EEEEEECC
Q ss_conf             6752--14687507
Q 004540          435 ELGR--CEIWFSTG  446 (746)
Q Consensus       435 elg~--~E~k~~T~  446 (746)
                      . |.  .++.+.|.
T Consensus        84 ~-g~~S~~v~~~T~   96 (98)
T d1x5la1          84 C-GRFSQAMEVETG   96 (98)
T ss_dssp             E-CCCCCCEEEECC
T ss_pred             C-CCCCCCEEEECC
T ss_conf             9-589898999969

>d1x5aa1 b.1.2.1 (A:8-101) Ephrin type-A receptor 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-A receptor 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.88  E-value=0.0001  Score=49.76  Aligned_cols=83  Identities=22%  Similarity=0.250  Sum_probs=64.1

Q ss_pred             CEEEEEEEECEEEEEEECCCCC-CCCCCCEEEEEEEECCCCCCCCCCEEEECCCCEEEEECCCCCEEEEEEEEECCCCCC
Q ss_conf             4179998412048999276799-999861379876304878899992443157731375257766024599985168866
Q 004540          357 NMVKFEDVRATSLTVVLGSEDP-SPGNIISYTLWHRRAHEGFPARPTCTLFAPNTRFVVTGLCPATEYQFKVVSSNGTTE  435 (746)
Q Consensus       357 ~~vrFEevt~tSv~vvL~~~~~-s~~~i~Gy~LWhrks~~~y~~ePt~~~~~p~~r~lvs~L~P~TEY~fkvvsF~~~~e  435 (746)
                      --++.++++++||.|-++.... ....+.+|++.|+...+.      .......+++.|+||.|.|.|.|||.+|+..|+
T Consensus         7 ~~L~~~~~~~~si~vsW~~p~~~~~~~~i~Y~i~~~~~~~~------~~~~~~~t~~~i~~L~p~t~Y~~rV~A~n~~G~   80 (94)
T d1x5aa1           7 LSLKLVKKEPRQLELTWAGSRPRNPGGNLSYELHVLNQDEE------WHQMVLEPRVLLTKLQPDTTYIVRVRTLTPLGP   80 (94)
T ss_dssp             CCCCEEEEETTEEEEECCCCCSSCCSSCCEEEEEEECSSCE------EEEEESSSEEEEESCCSSCEEEEEEEEECSSSC
T ss_pred             CCEEEEECCCCEEEEEEECCCCCCCCCEEEEEEEEECCCCE------EEEEECCCEEEECCCCCCCEEEEEEEEECCCCC
T ss_conf             85699975899899998545678998389999987247841------788605589999799799899999999869868


Q ss_pred             CCCE-EEEEEC
Q ss_conf             7521-468750
Q 004540          436 LGRC-EIWFST  445 (746)
Q Consensus       436 lg~~-E~k~~T  445 (746)
                      =-.+ +..+.|
T Consensus        81 g~~S~~~~~~T   91 (94)
T d1x5aa1          81 GPFSPDHEFRT   91 (94)
T ss_dssp             CCCCCCEEEEC
T ss_pred             CCCCCCEEEEE
T ss_conf             29999889990

>d1wfta_ b.1.2.1 (A:) Host cell factor 2, HCF-2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Host cell factor 2, HCF-2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.85  E-value=0.0001  Score=49.72  Aligned_cols=91  Identities=14%  Similarity=0.224  Sum_probs=67.7

Q ss_pred             CEEEEEEEECEEEEEEECCCCCCCCCCCEEEEEEEECCCCCCCC---C-----------CEEEECCCCEEEEECCCCCEE
Q ss_conf             41799984120489992767999998613798763048788999---9-----------244315773137525776602
Q 004540          357 NMVKFEDVRATSLTVVLGSEDPSPGNIISYTLWHRRAHEGFPAR---P-----------TCTLFAPNTRFVVTGLCPATE  422 (746)
Q Consensus       357 ~~vrFEevt~tSv~vvL~~~~~s~~~i~Gy~LWhrks~~~y~~e---P-----------t~~~~~p~~r~lvs~L~P~TE  422 (746)
                      -.++++. +++||+|.++........|++|.|+|+.........   +           ...+..+.+.+.|.+|.|.|.
T Consensus        12 ~~v~v~~-~~~si~l~W~~P~~~~g~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~   90 (123)
T d1wfta_          12 STVRISK-NVDGIHLSWEPPTSPSGNILEYSAYLAIRTAQMQDNPSQLVFMRIYCGLKTSCTVTAGQLANAHIDYTSRPA   90 (123)
T ss_dssp             EEEEEEE-CSSEEEEEEECCSSCCSSCCCEEEEEEECSSCCCSCSCCCEEEEEEEESCSEEEEEHHHHTTCCCBCSSSCE
T ss_pred             CCCEEEE-CCCEEEEEECCCHHCCCCEEEEEEEEEECCCCCCCCCCEEEEEEEECCCCEEEEECCCCCEEEECCCCCCCE
T ss_conf             5529996-799799996483114975688899999888887654320156788617750576438866899828889988


Q ss_pred             EEEEEEECCCCCCCCCEEEEEECCCC
Q ss_conf             45999851688667521468750766
Q 004540          423 YQFKVVSSNGTTELGRCEIWFSTGSS  448 (746)
Q Consensus       423 Y~fkvvsF~~~~elg~~E~k~~T~s~  448 (746)
                      |.|||.++|..|.=-.+|+..++-..
T Consensus        91 Y~frV~A~N~~G~Gp~S~~~~~~t~~  116 (123)
T d1wfta_          91 IVFRISAKNEKGYGPATQIRWLQGNS  116 (123)
T ss_dssp             EEEEEEEBSSSSBCCCEEEEEECCSC
T ss_pred             EEEEEEEECCCCCCCCCCCEEEEECC
T ss_conf             99999996597298897768998368

>d2cuha1 b.1.2.1 (A:8-109) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin-X
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.85  E-value=4.7e-05  Score=52.12  Aligned_cols=85  Identities=13%  Similarity=0.136  Sum_probs=68.2

Q ss_pred             CCEEEEEEEECEEEEEEECCCCCCCCCCCEEEEEEEECCCCCCCCCCEEEECCCCEEEEECCCCCEEEEEEEEECCCCCC
Q ss_conf             74179998412048999276799999861379876304878899992443157731375257766024599985168866
Q 004540          356 PNMVKFEDVRATSLTVVLGSEDPSPGNIISYTLWHRRAHEGFPARPTCTLFAPNTRFVVTGLCPATEYQFKVVSSNGTTE  435 (746)
Q Consensus       356 ~~~vrFEevt~tSv~vvL~~~~~s~~~i~Gy~LWhrks~~~y~~ePt~~~~~p~~r~lvs~L~P~TEY~fkvvsF~~~~e  435 (746)
                      +-.+++.+++++|+.|-+.-.   ...|.||.+.|+.....   .-+..+....+.+.|.||.|.|+|.|+|.++++.+.
T Consensus         4 P~~l~~~~~t~~si~l~W~~p---~~~i~~Y~v~~~~~~~~---~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~a~~~~~~   77 (102)
T d2cuha1           4 PTQLRALNLTEGFAVLHWKPP---QNPVDTYDIQVTAPGAP---PLQAETPGSAVDYPLHDLVLHTNYTATVRGLRGPNL   77 (102)
T ss_dssp             CEEEECCCCSSSCEEEEEECC---SSCCSEEEEEEECSSSC---CEEEEEETTCSEEEECSCCSSSEEEEEEEEEETTEE
T ss_pred             CCCCEEEEECCCEEEEEEEEE---ECCCEEEEEEEEECCCC---CEEEEEEEEEEEEEECCEEEEEEEEEEEEEEECCCC
T ss_conf             975199996799899999830---04221469999712210---024554400126999567764799999999959989


Q ss_pred             CCCEEEEEECC
Q ss_conf             75214687507
Q 004540          436 LGRCEIWFSTG  446 (746)
Q Consensus       436 lg~~E~k~~T~  446 (746)
                      -...++.+.|.
T Consensus        78 s~~~~~~~~T~   88 (102)
T d2cuha1          78 TSPASITFTTG   88 (102)
T ss_dssp             CCCEEEEEESC
T ss_pred             CCCEEEEEECC
T ss_conf             18988899979

>d1tdqa3 b.1.2.1 (A:186-271) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.84  E-value=0.00011  Score=49.41  Aligned_cols=84  Identities=17%  Similarity=0.227  Sum_probs=66.7

Q ss_pred             CCCCCEEEEEEEECEEEEEEECCCCCCCCCCCEEEEEEEECCCCCCCCCCEEEECCCCEEEEECCCCCEEEEEEEEECCC
Q ss_conf             65674179998412048999276799999861379876304878899992443157731375257766024599985168
Q 004540          353 VIVPNMVKFEDVRATSLTVVLGSEDPSPGNIISYTLWHRRAHEGFPARPTCTLFAPNTRFVVTGLCPATEYQFKVVSSNG  432 (746)
Q Consensus       353 l~~~~~vrFEevt~tSv~vvL~~~~~s~~~i~Gy~LWhrks~~~y~~ePt~~~~~p~~r~lvs~L~P~TEY~fkvvsF~~  432 (746)
                      |.++--+++.+++++|++|.+.-.   ...+.||.+-|+.....   +....+...++.+.+.||.|.|+|.|+|.++++
T Consensus         1 l~~P~nl~v~~~~~~s~~l~W~~p---~~~~~~Y~v~~~~~~~~---~~~~~~~~~~~~~~~~~L~p~t~Y~v~V~a~~~   74 (86)
T d1tdqa3           1 LDSPRDLMVTASSETSISLIWTKA---SGPIDHYRITFTPSSGI---SSEVTVPRDRTSYTLTDLEPGAEYIISITAERG   74 (86)
T ss_dssp             CCCCEEEEEEEECSSCEEEEEECC---CSCCSEEEEEEECSSSC---CEEEEEESSCSEEEECCCCTTCCEEEEEEEEET
T ss_pred             CCCCCCCEEEEECCCEEEEEEECC---CCCCCCEEEEEECCCCC---CEEEEECCCCCEEEECCCCCCCEEEEEEEEECC
T ss_conf             936977799982699999999699---88755128987426665---258971899659998897326389999999909


Q ss_pred             CCCCCCEEEE
Q ss_conf             8667521468
Q 004540          433 TTELGRCEIW  442 (746)
Q Consensus       433 ~~elg~~E~k  442 (746)
                      .|+-...++.
T Consensus        75 ~~~s~p~~~~   84 (86)
T d1tdqa3          75 RQQSLESTVD   84 (86)
T ss_dssp             TEECCCEEEE
T ss_pred             CCEECCEEEE
T ss_conf             9898789712

>d1qg3a2 b.1.2.1 (A:1218-1320) Integrin beta-4 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Integrin beta-4 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.82  E-value=0.00017  Score=48.14  Aligned_cols=90  Identities=18%  Similarity=0.241  Sum_probs=67.5

Q ss_pred             CCEEEEEEEECEEEEEEECCCCCCCCCCCEEEEEEEECCCC-CCCCCC---EEEECCCCEEEEECCCCCEEEEEEEEECC
Q ss_conf             74179998412048999276799999861379876304878-899992---44315773137525776602459998516
Q 004540          356 PNMVKFEDVRATSLTVVLGSEDPSPGNIISYTLWHRRAHEG-FPARPT---CTLFAPNTRFVVTGLCPATEYQFKVVSSN  431 (746)
Q Consensus       356 ~~~vrFEevt~tSv~vvL~~~~~s~~~i~Gy~LWhrks~~~-y~~ePt---~~~~~p~~r~lvs~L~P~TEY~fkvvsF~  431 (746)
                      +-.++...++++|++|.++........|.+|.+.|+..... ......   .+....++.+.|.||.|.|+|.|||.+++
T Consensus         6 P~~~~~~~~~~~sv~v~W~~P~~~~g~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n   85 (103)
T d1qg3a2           6 PGRLAFNVVSSTVTQLSWAEPAETNGEITAYEVCYGLVNDDNRPIGPMKKVLVDNPKNRMLLIENLRESQPYRYTVKARN   85 (103)
T ss_dssp             CCCCEEEEEETTEEEEECCCCSCCSSCCCEEEEEEEEBCTTSCBCSCCEEEEECCTTCCEEEECCCCTTCCEEEEEEEEE
T ss_pred             CCCCEEEEECCCEEEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEEEEEC
T ss_conf             98819999569999999987866887734787775124566666662178995288713899930389988999999991


Q ss_pred             CCCCCCCEEEEEEC
Q ss_conf             88667521468750
Q 004540          432 GTTELGRCEIWFST  445 (746)
Q Consensus       432 ~~~elg~~E~k~~T  445 (746)
                      ..|.=-..++...+
T Consensus        86 ~~G~g~~s~~~v~~   99 (103)
T d1qg3a2          86 GAGWGPEREAIINL   99 (103)
T ss_dssp             TTEECCCEEEEECG
T ss_pred             CCCCCCCCCCCCEE
T ss_conf             98457883664388

>d1x5xa1 b.1.2.1 (A:8-103) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.79  E-value=0.00017  Score=48.11  Aligned_cols=86  Identities=21%  Similarity=0.220  Sum_probs=65.1

Q ss_pred             EEEEEEEECEEEEEEECCCCC-CCCCCCEEEEEEEECCCCCCCCCCEEEECCCCEEEEECCCCCEEEEEEEEECCCCCCC
Q ss_conf             179998412048999276799-9998613798763048788999924431577313752577660245999851688667
Q 004540          358 MVKFEDVRATSLTVVLGSEDP-SPGNIISYTLWHRRAHEGFPARPTCTLFAPNTRFVVTGLCPATEYQFKVVSSNGTTEL  436 (746)
Q Consensus       358 ~vrFEevt~tSv~vvL~~~~~-s~~~i~Gy~LWhrks~~~y~~ePt~~~~~p~~r~lvs~L~P~TEY~fkvvsF~~~~el  436 (746)
                      .+++.+++++||+|-+..... ....|.+|.++++.....  ..........++.+.|.||.|.|+|.|||.+++..|.=
T Consensus         6 ~~~v~~~~~~si~l~W~~p~~~~~~~~~~y~~~~~~~~~~--~~~~~~~~~~~~~~~v~~L~p~t~Y~~rV~A~n~~G~s   83 (96)
T d1x5xa1           6 SPVLTKAGITWLSLQWSKPSGTPSDEGISYILEMEEETSG--YGFKPKYDGEDLAYTVKNLRRSTKYKFKVIAYNSEGKS   83 (96)
T ss_dssp             CCEEEEECSSEEEEECCCCSSCCSSSSCEEEEEECCSSSS--CCCEEEEEESCSEEEEESCCSSCEEEEEEEEECSSCEE
T ss_pred             CCEEEEECCCEEEEEEEEECCCCCCEEEEEEEEEEECCCE--EEEEEEECCCCCEEEECCCCCCCEEEEEEEEECCCCEE
T ss_conf             9999994499899999961125852173258886412101--11487631898999999989999999999998499685


Q ss_pred             CCEE-EEEEC
Q ss_conf             5214-68750
Q 004540          437 GRCE-IWFST  445 (746)
Q Consensus       437 g~~E-~k~~T  445 (746)
                      ..++ +.+.|
T Consensus        84 ~~S~~~~~~T   93 (96)
T d1x5xa1          84 NPSEVVEFTT   93 (96)
T ss_dssp             EECCCEEEEC
T ss_pred             CCCCCEEEEE
T ss_conf             7988999996

>d2b5ib2 b.1.2.1 (B:104-207) Interleukin-2 receptor beta chain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-2 receptor beta chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.79  E-value=0.00019  Score=47.85  Aligned_cols=87  Identities=15%  Similarity=0.193  Sum_probs=71.2

Q ss_pred             CCCCCEEEEEEEECEEEEEEECCCCCC--CCCCCEEEEEEEECCCCCCCCCCEEEECCCCEEEEECCCCCEEEEEEEEEC
Q ss_conf             656741799984120489992767999--998613798763048788999924431577313752577660245999851
Q 004540          353 VIVPNMVKFEDVRATSLTVVLGSEDPS--PGNIISYTLWHRRAHEGFPARPTCTLFAPNTRFVVTGLCPATEYQFKVVSS  430 (746)
Q Consensus       353 l~~~~~vrFEevt~tSv~vvL~~~~~s--~~~i~Gy~LWhrks~~~y~~ePt~~~~~p~~r~lvs~L~P~TEY~fkvvsF  430 (746)
                      |.++-.++..+|+++|+.|-.......  ...+..|.+-|+.................++.+.|.+|.|.|.|.|||-+.
T Consensus         3 l~pP~~l~v~~~~~~s~~l~W~~p~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~rVra~   82 (104)
T d2b5ib2           3 LMAPISLQVVHVETHRCNISWEISQASHYFERHLEFEARTLSPGHTWEEAPLLTLKQKQEWICLETLTPDTQYEFQVRVK   82 (104)
T ss_dssp             CCCCEEEEEEEECSSCEEEEEECCSCCGGGTTCEEEEEEEECTTSCSTTSCCEEECSCCCEEEECSCCTTCEEEEEEEEE
T ss_pred             CCCCCCCEEEEEECCEEEEEECCCCCCCCCCCEEEEEEEEECCCCCCEEEEEEECCCCCEEEEECCCCCCCEEEEEEEEE
T ss_conf             38798849999759799999935455624541159999991046641024678627881799978989997899999999


Q ss_pred             CCCCCCCCE
Q ss_conf             688667521
Q 004540          431 NGTTELGRC  439 (746)
Q Consensus       431 ~~~~elg~~  439 (746)
                      ++.|..|.|
T Consensus        83 ~~~g~~g~w   91 (104)
T d2b5ib2          83 PLQGEFTTW   91 (104)
T ss_dssp             ESCCSSCCC
T ss_pred             ECCCCCCCC
T ss_conf             899999887

>d1x5ha1 b.1.2.1 (A:8-126) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.78  E-value=4.5e-05  Score=52.29  Aligned_cols=89  Identities=20%  Similarity=0.253  Sum_probs=67.4

Q ss_pred             CCCEEEEEEEECEEEEEEECCCCC--CCCCCCEEEEEEEECCCC-CCCCCCEEEECCCCEEEEECCCCCEEEEEEEEECC
Q ss_conf             674179998412048999276799--999861379876304878-89999244315773137525776602459998516
Q 004540          355 VPNMVKFEDVRATSLTVVLGSEDP--SPGNIISYTLWHRRAHEG-FPARPTCTLFAPNTRFVVTGLCPATEYQFKVVSSN  431 (746)
Q Consensus       355 ~~~~vrFEevt~tSv~vvL~~~~~--s~~~i~Gy~LWhrks~~~-y~~ePt~~~~~p~~r~lvs~L~P~TEY~fkvvsF~  431 (746)
                      ++-.++...++++|+.|-++....  ....|.||++.||..... ...+  .++...++.+.|.||.|.|.|.|+|.+|+
T Consensus        14 ~P~~v~~~~~~~~si~v~W~~p~~~~~ng~i~~Y~v~y~~~~~~~~~~~--~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n   91 (119)
T d1x5ha1          14 APQNLSLEVRNSKSIMIHWQPPAPATQNGQITGYKIRYRKASRKSDVTE--TLVSGTQLSQLIEGLDRGTEYNFRVAALT   91 (119)
T ss_dssp             CCEEEEEECCSSSEEEEEEECCCTTTCCSCEEEEBCEEEETTEEEEEEC--CBCCTTCCEEEEECCCSSCEEEEECEEEE
T ss_pred             CCCCEEEEEECCCEEEEEEECCCCCCCCCCEEEEEEEEEECCCCCCEEE--EECCCCCCEEEECCCCCCCEEEEEEEEEC
T ss_conf             8807199982686899999752666899777899999760534530132--10388701787679889988999999986


Q ss_pred             CCCCCCCE--EEEEECC
Q ss_conf             88667521--4687507
Q 004540          432 GTTELGRC--EIWFSTG  446 (746)
Q Consensus       432 ~~~elg~~--E~k~~T~  446 (746)
                      ..|. |.|  .+.+.|.
T Consensus        92 ~~G~-G~~S~~~~~~T~  107 (119)
T d1x5ha1          92 INGT-GPATDWLSAETF  107 (119)
T ss_dssp             TTEE-EEECCCEEEECC
T ss_pred             CCCC-CCCCCCEEEEEC
T ss_conf             9868-789998998908

>d1x5ja1 b.1.2.1 (A:8-107) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.78  E-value=0.00016  Score=48.38  Aligned_cols=89  Identities=19%  Similarity=0.210  Sum_probs=65.0

Q ss_pred             CCCEEEEEEEECEEEEEEECCCC-C---CCCCCCEEEEEEEECCCCCCCCCCEEEECCCCEEEEECCCCCEEEEEEEEEC
Q ss_conf             67417999841204899927679-9---9998613798763048788999924431577313752577660245999851
Q 004540          355 VPNMVKFEDVRATSLTVVLGSED-P---SPGNIISYTLWHRRAHEGFPARPTCTLFAPNTRFVVTGLCPATEYQFKVVSS  430 (746)
Q Consensus       355 ~~~~vrFEevt~tSv~vvL~~~~-~---s~~~i~Gy~LWhrks~~~y~~ePt~~~~~p~~r~lvs~L~P~TEY~fkvvsF  430 (746)
                      ++-.++.++++++||.|..+... +   ....+.+|.+.|+........  ...+...++.+.|.||.|.|+|.|||.+|
T Consensus         4 pP~~v~~~~~s~tsi~v~W~~p~~~~~~~~~~~~~y~v~~~~~~~~~~~--~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~   81 (100)
T d1x5ja1           4 PPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTK--YKNANATTLSYLVTGLKPNTLYEFSVMVT   81 (100)
T ss_dssp             CCEEEEEEEEETTEEEEEEECTTSCSSSCCCSSCEEEEEECBSSSSSCC--CEECCBCSSEEEEESCCTTCEECCEEEEE
T ss_pred             CCCCEEEEEECCCEEEEEECCCCCCCCCCEEEEEEEEEEEEECCCCCCE--EEECCCCCCEEEECCCCCCCEEEEEEEEE
T ss_conf             8838499996599799998188321002100378898886206887541--57537872099988889999899999997


Q ss_pred             CCCCCCCCEE-EEEEC
Q ss_conf             6886675214-68750
Q 004540          431 NGTTELGRCE-IWFST  445 (746)
Q Consensus       431 ~~~~elg~~E-~k~~T  445 (746)
                      ++.|+=.-++ +.+.|
T Consensus        82 n~~g~s~~S~~~~~~T   97 (100)
T d1x5ja1          82 KGRRSSTWSMTAHGTT   97 (100)
T ss_dssp             CSSCBCCCCCCCCEEC
T ss_pred             ECCCCCCCCCEEEEEE
T ss_conf             1894769977089991

>d1cfba1 b.1.2.1 (A:610-709) Neuroglian, two amino proximal Fn3 repeats {Drosophila melanogaster [TaxId: 7227]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neuroglian, two amino proximal Fn3 repeats
species: Drosophila melanogaster [TaxId: 7227]

Probab=97.75  E-value=0.00016  Score=48.31  Aligned_cols=79  Identities=13%  Similarity=0.189  Sum_probs=58.1

Q ss_pred             CEEEEEEEECEEEEEEECCCCCCCCCCCEEEEEEEECCCCCCCCCCEEEECCCCEEEEECCCCCEEEEEEEEECCCCCCC
Q ss_conf             41799984120489992767999998613798763048788999924431577313752577660245999851688667
Q 004540          357 NMVKFEDVRATSLTVVLGSEDPSPGNIISYTLWHRRAHEGFPARPTCTLFAPNTRFVVTGLCPATEYQFKVVSSNGTTEL  436 (746)
Q Consensus       357 ~~vrFEevt~tSv~vvL~~~~~s~~~i~Gy~LWhrks~~~y~~ePt~~~~~p~~r~lvs~L~P~TEY~fkvvsF~~~~el  436 (746)
                      ..+++ .+.+++++|-+.........|.+|.+.|+..................+.+.+.+|.|.|.|.|||.++++.|.=
T Consensus        10 ~~~~v-~~~~~sv~lsW~pp~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~t~Y~frV~A~n~~G~g   88 (100)
T d1cfba1          10 KLTGI-TCQADKAEIHWEQQGDNRSPILHYTIQFNTSFTPASWDAAYEKVPNTDSSFVVQMSPWANYTFRVIAFNKIGAS   88 (100)
T ss_dssp             EEEEE-EECSSEEEEEEECCCCTTSCCCEEEEEEEESSSTTCCEEEEEEEETTCSEEEEECCSSEEEEEEEEEEETTEEC
T ss_pred             CCCEE-EECCCEEEEEECCCCCCCCCEEEEEEEEECCCCCCEEEEEEEECCCCEEEEEECCCCCCEEEEEEEEEECCCCC
T ss_conf             67599-98189899997398465365488899986289970466776311783099991577998999999998498498

>d1wf5a1 b.1.2.1 (A:8-115) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.74  E-value=4.3e-05  Score=52.39  Aligned_cols=82  Identities=17%  Similarity=0.244  Sum_probs=60.1

Q ss_pred             CCCCCEEEEEEEECEEEEEEECCCCCCCCCCCEEEEEEEECCCCCCCCCCEEEECCCCEEEEECCCCCEEEEEEEEECCC
Q ss_conf             65674179998412048999276799999861379876304878899992443157731375257766024599985168
Q 004540          353 VIVPNMVKFEDVRATSLTVVLGSEDPSPGNIISYTLWHRRAHEGFPARPTCTLFAPNTRFVVTGLCPATEYQFKVVSSNG  432 (746)
Q Consensus       353 l~~~~~vrFEevt~tSv~vvL~~~~~s~~~i~Gy~LWhrks~~~y~~ePt~~~~~p~~r~lvs~L~P~TEY~fkvvsF~~  432 (746)
                      -|.+..+.+.+++.+||+|-+.........|.||.|.|+....... .....+....+.+.|.||.|.|.|.|||.+++.
T Consensus        13 ~P~~p~~~~~~~~~~sv~l~W~~P~~~~~~I~~Y~v~~~~~~~~~~-~~~~~~~~~~~~~~i~~L~p~t~Y~frV~A~N~   91 (108)
T d1wf5a1          13 APEHPVATLSTVERRAINLTWTKPFDGNSPLIRYILEMSENNAPWT-VLLASVDPKATSVTVKGLVPARSYQFRLCAVND   91 (108)
T ss_dssp             CCSSCEEEECSSSTTEEEEECCCCCCCSSCEEEEEEEEECTTCCCE-EEESSCCTTCCEEEEESCCTTCEEEEEEEEEES
T ss_pred             CCCCCEEEEEECCCCEEEEEEECCCCCCCCCEEEEEEEEECCCCCE-EEEEEECCCCCEEEECCCCCCCEEEEEEEEECC
T ss_conf             8999989899334898999997988899823899999984468843-774664188568998888999999999999859


Q ss_pred             CCC
Q ss_conf             866
Q 004540          433 TTE  435 (746)
Q Consensus       433 ~~e  435 (746)
                      .|.
T Consensus        92 ~G~   94 (108)
T d1wf5a1          92 VGK   94 (108)
T ss_dssp             SCE
T ss_pred             CCC
T ss_conf             859

>d1x3da1 b.1.2.1 (A:8-112) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.73  E-value=0.00017  Score=48.21  Aligned_cols=90  Identities=19%  Similarity=0.289  Sum_probs=68.2

Q ss_pred             CCCEEEEEEEECEEEEEEECCCCCCCCCCCEEEEEEEECCCCCCCCCCEEEECCCCEEEEECCCCCEEEEEEEEECCCCC
Q ss_conf             67417999841204899927679999986137987630487889999244315773137525776602459998516886
Q 004540          355 VPNMVKFEDVRATSLTVVLGSEDPSPGNIISYTLWHRRAHEGFPARPTCTLFAPNTRFVVTGLCPATEYQFKVVSSNGTT  434 (746)
Q Consensus       355 ~~~~vrFEevt~tSv~vvL~~~~~s~~~i~Gy~LWhrks~~~y~~ePt~~~~~p~~r~lvs~L~P~TEY~fkvvsF~~~~  434 (746)
                      ++-.++...+++++|+|.+.-.......|.+|.|.++.....  ..........++.+.+.+|.|.|+|.|||.++++.|
T Consensus        13 ~P~~~~~~~~~~~sv~l~W~pp~~~~~~i~~Y~i~~~~~~~~--~~~~~~~~~~~~~~~~~~L~p~t~Y~frV~A~N~~G   90 (105)
T d1x3da1          13 IPNPPRIANRTKNSLTLQWKAPSDNGSKIQNFVLEWDEGKGN--GEFCQCYMGSQKQFKITKLSPAMGCKFRLSARNDYG   90 (105)
T ss_dssp             CCCCCEEEEEETTEEEEECCCCCCCSSCEEEEEEEECTTTSS--SCCEEEEEESCSEEEEESCCTTCEEEEECCEEESSC
T ss_pred             CCCCCEEEECCCCEEEEEEECCCCCCCCCEEEEEEEECCCCC--CEEEEEECCCCCEEEECCCCCCCEEEEEEEEECCCE
T ss_conf             898989997269989999979988867617899998448885--216998448863999568769819999999987971


Q ss_pred             CCCCE-EEEEECC
Q ss_conf             67521-4687507
Q 004540          435 ELGRC-EIWFSTG  446 (746)
Q Consensus       435 elg~~-E~k~~T~  446 (746)
                      .=..+ .+.+.|.
T Consensus        91 ~s~~S~~~~~~T~  103 (105)
T d1x3da1          91 TSGFSEEVLYYTS  103 (105)
T ss_dssp             BCCCCCCEEEECS
T ss_pred             ECCCCCCEEEECC
T ss_conf             9289985899898

>d1wfua_ b.1.2.1 (A:) Fibronectin type 3 and ankyrin repeat domains 1 protein, FANK1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type 3 and ankyrin repeat domains 1 protein, FANK1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.72  E-value=8.6e-05  Score=50.24  Aligned_cols=89  Identities=19%  Similarity=0.113  Sum_probs=63.9

Q ss_pred             EEEEEEEECEEEEEEECCCCC-CCCCCCEEEEEEEECCCC-CCCCCCEEEECCCCEEEEECCCCCEEEEEEEEECCCCCC
Q ss_conf             179998412048999276799-999861379876304878-899992443157731375257766024599985168866
Q 004540          358 MVKFEDVRATSLTVVLGSEDP-SPGNIISYTLWHRRAHEG-FPARPTCTLFAPNTRFVVTGLCPATEYQFKVVSSNGTTE  435 (746)
Q Consensus       358 ~vrFEevt~tSv~vvL~~~~~-s~~~i~Gy~LWhrks~~~-y~~ePt~~~~~p~~r~lvs~L~P~TEY~fkvvsF~~~~e  435 (746)
                      ..+..+|+++||+|.++.... -...|.+|.+.|+..... -...-.-+.....+.+.|.+|+|.|+|.|||.+++..|.
T Consensus        21 ~p~v~~vt~~sv~l~W~~P~~~~g~~i~~y~i~y~~~~~~~~~~~~~~~~~~~~~~~~v~~L~p~t~Y~frV~A~n~~G~  100 (120)
T d1wfua_          21 PPVVGKVTHHSIELYWDLEQKEKRQGPQEQWLRFSIEEEDPKMHSYGVIYTGYATRHVVEGLEPRTLYKFRLKVTSPSGE  100 (120)
T ss_dssp             CCBCCCEETTEEEEECTTTSCSCCCSCGGGCCEEEEEEECTTTCCEEEEEEESCSEEEEESCCTTCEEEEEEEEECSSSC
T ss_pred             CCEEEEECCCEEEEEEECCCCCCCCCCCCEEEEEEEECCCCCCCCEEEECCCCCCEEECCCCCCCCEEEEEEEEEECCCE
T ss_conf             99986756998999987982157312244066666410355510025512464347717999889276089999949857


Q ss_pred             CCCEE-EEEECC
Q ss_conf             75214-687507
Q 004540          436 LGRCE-IWFSTG  446 (746)
Q Consensus       436 lg~~E-~k~~T~  446 (746)
                      =..++ +.+.|.
T Consensus       101 s~~S~~~~~~T~  112 (120)
T d1wfua_         101 YEYSPVVSVATT  112 (120)
T ss_dssp             EEECCCEEEECC
T ss_pred             ECCCCCEEEEEC
T ss_conf             189897888928

>d2haza1 b.1.2.1 (A:489-589) Neural cell adhesion molecule 1, NCAM {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neural cell adhesion molecule 1, NCAM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.71  E-value=3.3e-05  Score=53.19  Aligned_cols=88  Identities=14%  Similarity=0.118  Sum_probs=60.8

Q ss_pred             CCCCEEEEEEEECEEEEEEECCCCCC-CCCCCEEEEEEEECCCC-CCCCCCEE-EECCCCEEEEECCCCCEEEEEEEEEC
Q ss_conf             56741799984120489992767999-99861379876304878-89999244-31577313752577660245999851
Q 004540          354 IVPNMVKFEDVRATSLTVVLGSEDPS-PGNIISYTLWHRRAHEG-FPARPTCT-LFAPNTRFVVTGLCPATEYQFKVVSS  430 (746)
Q Consensus       354 ~~~~~vrFEevt~tSv~vvL~~~~~s-~~~i~Gy~LWhrks~~~-y~~ePt~~-~~~p~~r~lvs~L~P~TEY~fkvvsF  430 (746)
                      |.+..+..-++++++++|.+...... ...|.+|.|.||..... ....-..+ ....++.+.|+||.|.|.|.|||.++
T Consensus         3 P~~P~~~~~~~~~~sv~l~W~~P~~~gg~~I~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~frV~A~   82 (101)
T d2haza1           3 PSSPSIDQVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPETTYAVRLAAL   82 (101)
T ss_dssp             CCCCEEEEEEECSSCEEEEEECCSCCTTSCCCEEEEEEEETTCCCCEEEEEEHHHHHHHSEEEECSCCTTCEEEEEEEEE
T ss_pred             CCCCCCCEEEEECCEEEEEEECCCCCCCCCEEEEEEEEEECCCCCEEEEEEEEECCCCEEEEEECCCCCCEEEEEEEEEE
T ss_conf             90796678876289999998287767645678999987616884201220123136641489854777993899999997


Q ss_pred             CCCCCCCCEEE
Q ss_conf             68866752146
Q 004540          431 NGTTELGRCEI  441 (746)
Q Consensus       431 ~~~~elg~~E~  441 (746)
                      +..|.=..++.
T Consensus        83 N~~G~g~~S~~   93 (101)
T d2haza1          83 NGKGLGEISAA   93 (101)
T ss_dssp             ETTEECCCCCC
T ss_pred             ECCCCCCCCCC
T ss_conf             08859689784

>d2dtge3 b.1.2.1 (E:468-592) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.69  E-value=3.9e-05  Score=52.72  Aligned_cols=79  Identities=11%  Similarity=0.112  Sum_probs=60.9

Q ss_pred             EEEEEEEECEEEEEEECCCCC-CCCCCCEEEEEEEECCCC-CCCCC---C------------------EEEECCCCEEEE
Q ss_conf             179998412048999276799-999861379876304878-89999---2------------------443157731375
Q 004540          358 MVKFEDVRATSLTVVLGSEDP-SPGNIISYTLWHRRAHEG-FPARP---T------------------CTLFAPNTRFVV  414 (746)
Q Consensus       358 ~vrFEevt~tSv~vvL~~~~~-s~~~i~Gy~LWhrks~~~-y~~eP---t------------------~~~~~p~~r~lv  414 (746)
                      .|...+++++||+|-++.... ....|.||.+.||.+... .....   .                  .......+.+.|
T Consensus         7 nl~~~~~sstsv~lsW~pP~~~~~~~i~gY~I~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   86 (125)
T d2dtge3           7 KFSYIRTSFDKILLRWEPYWPPDFRDLLGFMLFYKEAPYQNVTEFDGQDACGSNSWTVVDIDPPLRSNDPKSQNHPGWLM   86 (125)
T ss_dssp             CCSEEEECSSCEEEECCCCCSSSCCCEEEECCCSSSCCTTTCCCCCCCCCSCCCCCCCCCSCCEEEECCCCSSSCCEEEE
T ss_pred             EEEEEEECCCEEEEEEECCCCCCCCCEEEEEEEEEECCCCCEEEEEECCCCCCCCCCEECCCCCCEEEEECCCCCCEEEE
T ss_conf             98999714999999991987169993788899999878876078851035687644101026742023423786078998


Q ss_pred             ECCCCCEEEEEEEEECCCCCCC
Q ss_conf             2577660245999851688667
Q 004540          415 TGLCPATEYQFKVVSSNGTTEL  436 (746)
Q Consensus       415 s~L~P~TEY~fkvvsF~~~~el  436 (746)
                      .||.|.|.|.|+|.+|+..|+-
T Consensus        87 ~~L~p~T~Y~~~V~A~n~~G~~  108 (125)
T d2dtge3          87 RGLKPWTQYAIFVKTLVTFSDE  108 (125)
T ss_dssp             CSCCSSCBCCBEEEECCCCCSS
T ss_pred             CCCCCCCEEEEEEEEEECCCCC
T ss_conf             9986698899999999477755

>d1x5ya1 b.1.2.1 (A:8-105) Myosin binding protein C, fast-type {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Myosin binding protein C, fast-type
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.68  E-value=0.00011  Score=49.42  Aligned_cols=79  Identities=22%  Similarity=0.213  Sum_probs=59.8

Q ss_pred             CCCEEEEEEEECEEEEEEECCCCC-CCCCCCEEEEEEEECCCC-CCCCCCEEEECCCCEEEEECCCCCEEEEEEEEECCC
Q ss_conf             674179998412048999276799-999861379876304878-899992443157731375257766024599985168
Q 004540          355 VPNMVKFEDVRATSLTVVLGSEDP-SPGNIISYTLWHRRAHEG-FPARPTCTLFAPNTRFVVTGLCPATEYQFKVVSSNG  432 (746)
Q Consensus       355 ~~~~vrFEevt~tSv~vvL~~~~~-s~~~i~Gy~LWhrks~~~-y~~ePt~~~~~p~~r~lvs~L~P~TEY~fkvvsF~~  432 (746)
                      ++-.+.+.+++++||+|-+.-... -...|.||.+=||..... ...  ........+.+.|+||.|.|+|.|||.+++.
T Consensus         4 ~P~~~~v~~~~~~sv~l~W~pP~~~~~~~i~~Y~V~~~~~~~~~~~~--~~~~~~~~~~~~v~~L~~~~~Y~frV~A~n~   81 (98)
T d1x5ya1           4 APQHLTVEDVTDTTTTLKWRPPDRIGAGGIDGYLVEYCLEGSEEWVP--ANKEPVERCGFTVKDLPTGARILFRVVGVNI   81 (98)
T ss_dssp             CCEEEEEEEECSSEEEEEEECCSCCCSSCCCEEEEEEEETTCCCCEE--SSSSCBSSSEEEEECCCTTCCEEEEEEEEET
T ss_pred             CCCCCEEEECCCCEEEEEEECCCCCCCCCCEEEEEEEEECCCCEEEE--EEEECCCEEEEEECCCCCCEEEEEEEEEECC
T ss_conf             78076999753999999998997589887558999987167502377--4410575269998787698699999999879


Q ss_pred             CCC
Q ss_conf             866
Q 004540          433 TTE  435 (746)
Q Consensus       433 ~~e  435 (746)
                      .|.
T Consensus        82 ~G~   84 (98)
T d1x5ya1          82 AGR   84 (98)
T ss_dssp             TEE
T ss_pred             CCC
T ss_conf             859

>d1cfba2 b.1.2.1 (A:710-814) Neuroglian, two amino proximal Fn3 repeats {Drosophila melanogaster [TaxId: 7227]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neuroglian, two amino proximal Fn3 repeats
species: Drosophila melanogaster [TaxId: 7227]

Probab=97.65  E-value=0.00013  Score=48.92  Aligned_cols=82  Identities=15%  Similarity=0.102  Sum_probs=60.5

Q ss_pred             CCEEEEEEEECEEEEEEECCCCC--CCCCCCEEEEEEEECCCCCCCCCCEEEECCCCEEEEECCCCCEEEEEEEEECCCC
Q ss_conf             74179998412048999276799--9998613798763048788999924431577313752577660245999851688
Q 004540          356 PNMVKFEDVRATSLTVVLGSEDP--SPGNIISYTLWHRRAHEGFPARPTCTLFAPNTRFVVTGLCPATEYQFKVVSSNGT  433 (746)
Q Consensus       356 ~~~vrFEevt~tSv~vvL~~~~~--s~~~i~Gy~LWhrks~~~y~~ePt~~~~~p~~r~lvs~L~P~TEY~fkvvsF~~~  433 (746)
                      +--++.+.+++++|+|-+.-..+  ....|.||+|-||.....-.....-+.....+.+.|.+|.|.|+|.|+|.++|..
T Consensus         8 P~~v~~~~~~~~si~v~W~p~~~~~~ng~i~~Y~I~y~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~N~~   87 (105)
T d1cfba2           8 PDNVVGQGTEPNNLVISWTPMPEIEHNAPNFHYYVSWKRDIPAAAWENNNIFDWRQNNIVIADQPTFVKYLIKVVAINDR   87 (105)
T ss_dssp             CSCCEEECSSTTCEEEECCCCCGGGTCSSSCEEEEEEEESSTTCCCEEEEECCTTCCEEEECSCCSSCEEEEEEEEEETT
T ss_pred             CCCEEEEECCCCEEEEEEECCCHHHCCCEEEEEEEEEEEECCCCCEEEEEECCCCCCEEEECCCCCCCEEEEEEEEEECC
T ss_conf             93729997259939999858971236843789998753100100016887258980689989989997799999999098


Q ss_pred             CCCC
Q ss_conf             6675
Q 004540          434 TELG  437 (746)
Q Consensus       434 ~elg  437 (746)
                      |+=-
T Consensus        88 G~gp   91 (105)
T d1cfba2          88 GESN   91 (105)
T ss_dssp             EECS
T ss_pred             CCCC
T ss_conf             4889

>d1ueya_ b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA0343 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.65  E-value=0.00011  Score=49.53  Aligned_cols=86  Identities=16%  Similarity=0.132  Sum_probs=67.5

Q ss_pred             CCEEEEEEEECEEEEEEECCCCCCCCCCCEEEEEEEECCCCCCCCCCEEEECCCCEEEEECCCCCEEEEEEEEECCCCCC
Q ss_conf             74179998412048999276799999861379876304878899992443157731375257766024599985168866
Q 004540          356 PNMVKFEDVRATSLTVVLGSEDPSPGNIISYTLWHRRAHEGFPARPTCTLFAPNTRFVVTGLCPATEYQFKVVSSNGTTE  435 (746)
Q Consensus       356 ~~~vrFEevt~tSv~vvL~~~~~s~~~i~Gy~LWhrks~~~y~~ePt~~~~~p~~r~lvs~L~P~TEY~fkvvsF~~~~e  435 (746)
                      +-.+++..++.+||+|.+.........|.+|.+-|+.........-........+.+.|.+|.|.|+|.|||.+++..|+
T Consensus        20 P~~~~v~~~~~~sv~l~W~~p~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~frV~A~n~~G~   99 (127)
T d1ueya_          20 PFDLELTDQLDKSVQLSWTPGDDNNSPITKFIIEYEDAMHKPGLWHHQTEVSGTQTTAQLNLSPYVNYSFRVMAVNSIGK   99 (127)
T ss_dssp             CEEEEEECCSSSCEEEEEECCCCCSSCEEEEEEEEEBTTTCTTCEEEEEEEESSCCEEEECCCTTCEECCEEEEEESSCB
T ss_pred             CCCCEEEEECCCEEEEEEECCCCCCCCEEEEEEEECCCCCCCEEEEEEEECCCCEEEEECCCCCCCEEEEEEEEECCCCC
T ss_conf             98728998069969999708844344257643221025644302788764178319997898408889999999819857


Q ss_pred             CCCEEE
Q ss_conf             752146
Q 004540          436 LGRCEI  441 (746)
Q Consensus       436 lg~~E~  441 (746)
                      =..++.
T Consensus       100 s~~S~~  105 (127)
T d1ueya_         100 SLPSEA  105 (127)
T ss_dssp             CCCCSC
T ss_pred             CCCCCC
T ss_conf             688487

>d1bpva_ b.1.2.1 (A:) Type I titin module {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Type I titin module
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.64  E-value=0.00015  Score=48.60  Aligned_cols=80  Identities=18%  Similarity=0.245  Sum_probs=61.5

Q ss_pred             EEEEEEEECEEEEEEECCCC-CCCCCCCEEEEEEEECCCC-CCCCCCEEEECCCCEEEEECCCCCEEEEEEEEECCCCCC
Q ss_conf             17999841204899927679-9999861379876304878-899992443157731375257766024599985168866
Q 004540          358 MVKFEDVRATSLTVVLGSED-PSPGNIISYTLWHRRAHEG-FPARPTCTLFAPNTRFVVTGLCPATEYQFKVVSSNGTTE  435 (746)
Q Consensus       358 ~vrFEevt~tSv~vvL~~~~-~s~~~i~Gy~LWhrks~~~-y~~ePt~~~~~p~~r~lvs~L~P~TEY~fkvvsF~~~~e  435 (746)
                      .++..+++.+||+|-+.... .-...|.+|.+.++..... ...  .-....+.+.+.|.||.|.|+|.|||.+++..|+
T Consensus         8 ~p~~~~~t~~sv~lsW~~P~~~~g~~i~~y~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~L~p~t~Y~frV~A~n~~G~   85 (104)
T d1bpva_           8 KPVPLNITRHTVTLKWAKPEYTGGFKITSYIVEKRDLPNGRWLK--ANFSNILENEFTVSGLTEDAAYEFRVIAKNAAGA   85 (104)
T ss_dssp             CCEEEEEETTEEEEECCCCSCCTTCCCSCCEEEEEETTSCCCEE--CCCSCCCSSEEEECSCCSSCCEEEEEEEECTTSC
T ss_pred             CCEEEEECCCEEEEEEEECCCCCCCEEEEEEEEEECCCCCCEEE--EEEECCCEEEEEECCCCCCCEEEEEEEEEECCCC
T ss_conf             99999965998999998220057416888998751244562268--8762266037998687799799999999989999


Q ss_pred             CCCE
Q ss_conf             7521
Q 004540          436 LGRC  439 (746)
Q Consensus       436 lg~~  439 (746)
                      .|.+
T Consensus        86 ~s~~   89 (104)
T d1bpva_          86 ISPP   89 (104)
T ss_dssp             EEEE
T ss_pred             CCCC
T ss_conf             7888

>d1x4xa1 b.1.2.1 (A:8-100) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.63  E-value=0.00034  Score=45.98  Aligned_cols=83  Identities=18%  Similarity=0.131  Sum_probs=62.7

Q ss_pred             EEEEEEECEEEEEEECCCCCCCCCCCEEEEEEEECCCCCCCCCCEEEECCCCEEEEECCCCCEEEEEEEEECCCCCCCCC
Q ss_conf             79998412048999276799999861379876304878899992443157731375257766024599985168866752
Q 004540          359 VKFEDVRATSLTVVLGSEDPSPGNIISYTLWHRRAHEGFPARPTCTLFAPNTRFVVTGLCPATEYQFKVVSSNGTTELGR  438 (746)
Q Consensus       359 vrFEevt~tSv~vvL~~~~~s~~~i~Gy~LWhrks~~~y~~ePt~~~~~p~~r~lvs~L~P~TEY~fkvvsF~~~~elg~  438 (746)
                      .++..++++|+.|-++........|.+|.|.++.....    -..++...++.+.|.||.|.|+|.|||.+++..|.=..
T Consensus         7 ~~v~~~s~~si~l~W~~p~~~~~~i~~Y~v~~~~~~~~----~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~s~~   82 (93)
T d1x4xa1           7 PQVTCRSATCAQVNWEVPLSNGTDVTEYRLEWGGVEGS----MQICYCGPGLSYEIKGLSPATTYYCRVQALSVVGAGPF   82 (93)
T ss_dssp             CCCEEEETTEEEEECCCCSCSSSCCCEEEEEEESSTTS----CCEEEEESCSEEEEESCCSSCEEEEEEEEECSSCCCCB
T ss_pred             CEEEEECCCEEEEEEEECCCCCCEEEEEEEEECCCCCC----CEEEECCCCCEEEECCCCEEEEEEEEEEEEECCCCCCC
T ss_conf             89999479939999981554898027999898058886----16862698458999655400278899999979858389


Q ss_pred             EE-EEEEC
Q ss_conf             14-68750
Q 004540          439 CE-IWFST  445 (746)
Q Consensus       439 ~E-~k~~T  445 (746)
                      ++ +.+.|
T Consensus        83 S~~~~~~T   90 (93)
T d1x4xa1          83 SEVVACVT   90 (93)
T ss_dssp             CCCEEEEC
T ss_pred             CCCEEEEE
T ss_conf             78689993

>d1owwa_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.62  E-value=0.00017  Score=48.12  Aligned_cols=86  Identities=17%  Similarity=0.205  Sum_probs=63.8

Q ss_pred             EEEEEEE--ECEEEEEEECCCCCCCCCCCEEEEEEEECCCCCCCCCCEEEECCCCEEEEECCCCCEEEEEEEEECCCCCC
Q ss_conf             1799984--12048999276799999861379876304878899992443157731375257766024599985168866
Q 004540          358 MVKFEDV--RATSLTVVLGSEDPSPGNIISYTLWHRRAHEGFPARPTCTLFAPNTRFVVTGLCPATEYQFKVVSSNGTTE  435 (746)
Q Consensus       358 ~vrFEev--t~tSv~vvL~~~~~s~~~i~Gy~LWhrks~~~y~~ePt~~~~~p~~r~lvs~L~P~TEY~fkvvsF~~~~e  435 (746)
                      .+..-++  +++|++|-++..+  ...|.||.|=|+.....-+.. ...+....+.+.|.||.|.|+|.|+|.+++..|.
T Consensus         5 ~~~vt~~~~~~~s~~vsW~~P~--~~~i~~Y~i~y~~~~~~~~~~-~~~v~~~~~~~~l~gL~P~t~Y~v~v~av~~~G~   81 (93)
T d1owwa_           5 EVFITETPSQPNSHPIQWNAPQ--PSHISKYILRWRPKNSVGRWK-EATIPGHLNSYTIKGLKPGVVYEGQLISIQQYGH   81 (93)
T ss_dssp             EEECCCCSSCTTCEEEEEECCS--SSCEEEEEEEEEETTCSSCCE-EEEECSSCCEEEECSCCSSEEEEEEEEEEESSSC
T ss_pred             CCEEEECCCCCCEEEEEEECCC--CCCEEEEEEEEEECCCCCEEE-EECCCCCCCEEEECCCCCCCEEEEEEEEEECCCC
T ss_conf             6199976699879999960466--655108999986121122046-4304798129997895168399999999848875


Q ss_pred             CCCEEEEEECC
Q ss_conf             75214687507
Q 004540          436 LGRCEIWFSTG  446 (746)
Q Consensus       436 lg~~E~k~~T~  446 (746)
                      =-..+..+.|.
T Consensus        82 s~~~~~~~tT~   92 (93)
T d1owwa_          82 QEVTRFDFTTT   92 (93)
T ss_dssp             EEEEEEEEEEC
T ss_pred             CCCEEEEEEEC
T ss_conf             67488899952

>d1v5ja_ b.1.2.1 (A:) KIAA1355 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA1355
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.61  E-value=6.8e-05  Score=51.00  Aligned_cols=84  Identities=17%  Similarity=0.237  Sum_probs=59.7

Q ss_pred             CCCEEEEEEEECEEEEEEECCCCCCCCCCCEEEEEEEECCCCCCCCCCEEEECCCCEEEEECCCCCEEEEEEEEECCCCC
Q ss_conf             67417999841204899927679999986137987630487889999244315773137525776602459998516886
Q 004540          355 VPNMVKFEDVRATSLTVVLGSEDPSPGNIISYTLWHRRAHEGFPARPTCTLFAPNTRFVVTGLCPATEYQFKVVSSNGTT  434 (746)
Q Consensus       355 ~~~~vrFEevt~tSv~vvL~~~~~s~~~i~Gy~LWhrks~~~y~~ePt~~~~~p~~r~lvs~L~P~TEY~fkvvsF~~~~  434 (746)
                      .+.+..--..++++|+|-++........|.||.+.||........ -.-.+....+.+.|.||.|.|+|.|||.++++.|
T Consensus         9 sPP~~~~~~~t~~si~l~W~pp~~~~~~i~~Y~v~~~~~~~~~~~-~~~~~~~~~~~~~i~~L~p~t~Y~~rV~A~n~~g   87 (108)
T d1v5ja_           9 SPPRGLVAVRTPRGVLLHWDPPELVPKRLDGYVLEGRQGSQGWEV-LDPAVAGTETELLVPGLIKDVLYEFRLVAFAGSF   87 (108)
T ss_dssp             CCCEEEEEEECSSSEEEEEECCSCCSSCCCBEEEEEEETTCCCEE-EEEEECSSCCEEECCCCCTTSCEECCBEEEETTE
T ss_pred             CCCCCEEEEECCCEEEEEEEECCCCCCCEEEEEEEEEEEEEEEEE-CCCCCCCEEEEEEEEECCCCCEEEEEEEEEECCC
T ss_conf             929883998739989999972646799526788886410000000-0121000001479971369928999999992998


Q ss_pred             CCCCE
Q ss_conf             67521
Q 004540          435 ELGRC  439 (746)
Q Consensus       435 elg~~  439 (746)
                      .-..+
T Consensus        88 ~s~~S   92 (108)
T d1v5ja_          88 VSDPS   92 (108)
T ss_dssp             EEEEC
T ss_pred             EECCC
T ss_conf             86786

>d1va9a1 b.1.2.1 (A:8-116) Down syndrome cell adhesion molecule-like protein 1, DSCAML1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Down syndrome cell adhesion molecule-like protein 1, DSCAML1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.59  E-value=0.00053  Score=44.61  Aligned_cols=84  Identities=18%  Similarity=0.196  Sum_probs=64.6

Q ss_pred             CCCEEEEEEEECEEEEEEECCCCC--CCCCCCEEEEEEEECCCC-CCCCCCEE--EECCCCEEEEECCCCCEEEEEEEEE
Q ss_conf             674179998412048999276799--999861379876304878-89999244--3157731375257766024599985
Q 004540          355 VPNMVKFEDVRATSLTVVLGSEDP--SPGNIISYTLWHRRAHEG-FPARPTCT--LFAPNTRFVVTGLCPATEYQFKVVS  429 (746)
Q Consensus       355 ~~~~vrFEevt~tSv~vvL~~~~~--s~~~i~Gy~LWhrks~~~-y~~ePt~~--~~~p~~r~lvs~L~P~TEY~fkvvs  429 (746)
                      ++-.++.+.+++++++|-+.....  ....+.||.+.|+..... ........  .....+.+.|.+|.|.|.|.|||.+
T Consensus        11 pP~~v~v~~~~~~si~l~W~~p~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a   90 (109)
T d1va9a1          11 PPMDVTLQPVTSQSIQVTWKAPKKELQNGVIRGYQIGYRENSPGSNGQYSIVEMKATGDSEVYTLDNLKKFAQYGVVVQA   90 (109)
T ss_dssp             CCEEEEEEECSSSEEEEEEECCCSSTTCSCCCEEEEEEEESSTTSCCSCBCCBCCCCSSEEEEEEESCCSSCCEEEEEEE
T ss_pred             CCCCCEEEEECCCEEEEEECCCCCCCCCCCEEEEEEEEEECCCCCCCEEEEEEEECCCCEEEEEECCCCCCEEEEEEEEE
T ss_conf             89174999815998999992888778997578888887630136652024567853898029999899864599999999


Q ss_pred             CCCCCCCCCE
Q ss_conf             1688667521
Q 004540          430 SNGTTELGRC  439 (746)
Q Consensus       430 F~~~~elg~~  439 (746)
                      ++..|. |.|
T Consensus        91 ~n~~G~-g~~   99 (109)
T d1va9a1          91 FNRAGT-GPS   99 (109)
T ss_dssp             EETTEE-CCC
T ss_pred             ECCCCC-CCC
T ss_conf             839937-799

>d1x5ia1 b.1.2.1 (A:8-120) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.57  E-value=0.00051  Score=44.73  Aligned_cols=93  Identities=14%  Similarity=0.052  Sum_probs=64.9

Q ss_pred             CCCCCC-CCEEEEEEEECEEEEEEECCCCCCCCCCCEEEEEEEECCCCCCCCCCEEEECCCCEEEEECCCCCEEEEEEEE
Q ss_conf             887656-7417999841204899927679999986137987630487889999244315773137525776602459998
Q 004540          350 GSNVIV-PNMVKFEDVRATSLTVVLGSEDPSPGNIISYTLWHRRAHEGFPARPTCTLFAPNTRFVVTGLCPATEYQFKVV  428 (746)
Q Consensus       350 ~~~l~~-~~~vrFEevt~tSv~vvL~~~~~s~~~i~Gy~LWhrks~~~y~~ePt~~~~~p~~r~lvs~L~P~TEY~fkvv  428 (746)
                      ...+|. +..+++. ...++++|-+.........|.||.|-|+.....   .-+..+....+++.+.+|.|.|+|.|+|.
T Consensus        17 ~~~vP~~P~~~~~~-~~~~si~v~W~~p~~~~g~i~~Y~i~~~~~~~~---~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~   92 (113)
T d1x5ia1          17 ETRVPEVPSSLHVR-PLVTSIVVSWTPPENQNIVVRGYAIGYGIGSPH---AQTIKVDYKQRYYTIENLDPSSHYVITLK   92 (113)
T ss_dssp             CSSCCCSCSEEEEE-EETTEEEEEEECCSCTTBCCCEEEEEECSSCGG---GEEEECCTTCCEEEECSCCSSCEECCEEE
T ss_pred             CCCCCCCCEEEEEE-ECCCEEEEEEECCCCCCCCEEEEEEEEEECCCC---CEEEEEECCCCEEEEECCCCCCEEEEEEE
T ss_conf             88898889701566-579979999973425896278999885312364---11466507736999915645867889999


Q ss_pred             ECCCCCCCCCEEEEEECC
Q ss_conf             516886675214687507
Q 004540          429 SSNGTTELGRCEIWFSTG  446 (746)
Q Consensus       429 sF~~~~elg~~E~k~~T~  446 (746)
                      ++++.|+=-.....+.|+
T Consensus        93 A~n~~G~g~~~~~~~~T~  110 (113)
T d1x5ia1          93 AFNNVGEGIPLYESAVTR  110 (113)
T ss_dssp             EECSSCBCCCCCCCEECC
T ss_pred             EECCCCCCCCEEEEEEEC
T ss_conf             987996997864378847

>d2cuia1 b.1.2.1 (A:6-106) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin-X
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.54  E-value=0.00058  Score=44.32  Aligned_cols=86  Identities=17%  Similarity=0.209  Sum_probs=63.7

Q ss_pred             CEEEEEEEECEEEEEEECCCCCCCCCCCEEEEEEEECCCC-CCCCC------CEEEECCCCEEEEECCCCCEEEEEEEEE
Q ss_conf             4179998412048999276799999861379876304878-89999------2443157731375257766024599985
Q 004540          357 NMVKFEDVRATSLTVVLGSEDPSPGNIISYTLWHRRAHEG-FPARP------TCTLFAPNTRFVVTGLCPATEYQFKVVS  429 (746)
Q Consensus       357 ~~vrFEevt~tSv~vvL~~~~~s~~~i~Gy~LWhrks~~~-y~~eP------t~~~~~p~~r~lvs~L~P~TEY~fkvvs  429 (746)
                      -.+++.+|+++||+|-++-   ....+.+|.+-|+..... ....+      ...+....+.+.|.||+|.|.|.|+|-+
T Consensus         8 ~~l~v~~~t~~sv~v~W~p---p~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~L~p~t~Y~~~V~a   84 (101)
T d2cuia1           8 SQLSVTDVTTSSLRLNWEA---PPGAFDSFLLRFGVPSPSTLEPHPRPLLQRELMVPGTRHSAVLRDLRSGTLYSLTLYG   84 (101)
T ss_dssp             CCCEEESCCSSCEEEECCC---CTTSCSEEEEEEECCCCSSSCCCSSCCCCEEEEEETTCCEEEECSCCTTCEEEEEEEE
T ss_pred             CCCEEEEECCCEEEEEEEE---CCCCCCCEEEEEEECCCCCEEECCCCCCEEEEECCCCEEEEEECCCCCCCEEEEEEEE
T ss_conf             9839999789989999982---5625564499987638971231267765057615651107986999869889999999


Q ss_pred             CCCCCCCCCEEEEEEC
Q ss_conf             1688667521468750
Q 004540          430 SNGTTELGRCEIWFST  445 (746)
Q Consensus       430 F~~~~elg~~E~k~~T  445 (746)
                      +++.|.=...+....|
T Consensus        85 ~~~~g~g~~~~~~~~T  100 (101)
T d2cuia1          85 LRGPHKADSIQGTART  100 (101)
T ss_dssp             ECSSSEEEEEEEEEEC
T ss_pred             EECCCEECCEEEEEEE
T ss_conf             9399572785889597

>d2crza1 b.1.2.1 (A:8-104) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.50  E-value=0.00033  Score=46.08  Aligned_cols=76  Identities=16%  Similarity=0.180  Sum_probs=58.0

Q ss_pred             EEECEEEEEEECCCCCC-CCCCCEEEEEEEECCCCCCCCCCEEEECCCCEEEEECCCCCEEEEEEEEECCCCCCCCCEEE
Q ss_conf             84120489992767999-99861379876304878899992443157731375257766024599985168866752146
Q 004540          363 DVRATSLTVVLGSEDPS-PGNIISYTLWHRRAHEGFPARPTCTLFAPNTRFVVTGLCPATEYQFKVVSSNGTTELGRCEI  441 (746)
Q Consensus       363 evt~tSv~vvL~~~~~s-~~~i~Gy~LWhrks~~~y~~ePt~~~~~p~~r~lvs~L~P~TEY~fkvvsF~~~~elg~~E~  441 (746)
                      .++++||+|-+...... ...|++|.|.++.....   +...+.....+.++|.+|.|.|+|.|||.+++..|.=..+|.
T Consensus        13 ~~~~~sv~l~W~~P~~~gg~~i~~Y~v~~~~~~~~---~~~~~~~~~~~~~~v~~L~p~t~Y~frV~A~N~~G~s~~S~~   89 (97)
T d2crza1          13 RPKAKEIQLRWGPPLVDGGSPISCYSVEMSPIEKD---EPREVYQGSEVECTVSSLLPGKTYSFRLRAANKMGFGPFSEK   89 (97)
T ss_dssp             CCCSSEEEEECCCCSCCTTSCCCEEEEEEECTTSC---CCEEEEEESCSEEEEESCCTTCEEEECCEEECSSCBCCCCCC
T ss_pred             EEECCEEEEEEECCCCCCCCCEEEEEEEEECCCCC---CEEEEECCCCEEEEECCCCCCEEEEEEEEEECCCEECCCCCC
T ss_conf             26079999999298768998504999999727677---506752488609997678799799999999669749589687

>d2crma1 b.1.2.1 (A:8-114) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.50  E-value=0.00094  Score=42.83  Aligned_cols=83  Identities=11%  Similarity=0.124  Sum_probs=61.6

Q ss_pred             CEEEEEEEECEEEEEEECCCCC-CCCCCCEEEEEEEECCCCCCCCCCEEEECCCCEEEEECCCCCEEEEEEEEECCCCCC
Q ss_conf             4179998412048999276799-999861379876304878899992443157731375257766024599985168866
Q 004540          357 NMVKFEDVRATSLTVVLGSEDP-SPGNIISYTLWHRRAHEGFPARPTCTLFAPNTRFVVTGLCPATEYQFKVVSSNGTTE  435 (746)
Q Consensus       357 ~~vrFEevt~tSv~vvL~~~~~-s~~~i~Gy~LWhrks~~~y~~ePt~~~~~p~~r~lvs~L~P~TEY~fkvvsF~~~~e  435 (746)
                      .-+....+++++++|-+..... ....+.+|.+.++.....  ..-.......++.+.|.||.|.|+|.|||.+++..|.
T Consensus        16 ~~~~~~~~~~~sv~l~W~~P~~~~g~~~~~y~v~~~~~~~~--~~~~~~~~~~~~~~~i~~L~p~t~Y~~rV~A~n~~G~   93 (107)
T d2crma1          16 KPSVKGKIHSHSFKITWDPPKDNGGATINKYVVEMAEGSNG--NKWEMIYSGATREHLCDRLNPGCFYRLRVYCISDGGQ   93 (107)
T ss_dssp             CCEEEEEEETTEEEEECCCCTTCCSSCCCEEEEEEEESSSS--CCCEEEECSSCSEEEECSCCTTSCEEEEEEEEETTEE
T ss_pred             CCEEEEEECCCEEEEEEEECCCCCCCEEEEEEEEEEEECCC--CCEEEEECCCCCEEEEECCCCCCEEEEEEEEECCCCC
T ss_conf             99898515599999999977647832688999999810278--7479852587208878336799799999999879968


Q ss_pred             CCCEEE
Q ss_conf             752146
Q 004540          436 LGRCEI  441 (746)
Q Consensus       436 lg~~E~  441 (746)
                      =..+|.
T Consensus        94 s~~S~~   99 (107)
T d2crma1          94 SAVSES   99 (107)
T ss_dssp             CCCCCC
T ss_pred             CCCCCC
T ss_conf             189885

>d2ic2a1 b.1.2.1 (A:466-572) Hedgehog receptor iHog {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Hedgehog receptor iHog
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.49  E-value=0.0002  Score=47.58  Aligned_cols=79  Identities=11%  Similarity=0.086  Sum_probs=57.2

Q ss_pred             EEEEEEECEEEEEEECCCCCCCCCCCEEEEEEEECCCC-C----------CCCCCEEEECCCCEEEEECCCCCEEEEEEE
Q ss_conf             79998412048999276799999861379876304878-8----------999924431577313752577660245999
Q 004540          359 VKFEDVRATSLTVVLGSEDPSPGNIISYTLWHRRAHEG-F----------PARPTCTLFAPNTRFVVTGLCPATEYQFKV  427 (746)
Q Consensus       359 vrFEevt~tSv~vvL~~~~~s~~~i~Gy~LWhrks~~~-y----------~~ePt~~~~~p~~r~lvs~L~P~TEY~fkv  427 (746)
                      ..+.+++++||+|.+.-.......|+||.|=||..... .          ............+.+.|.||.|.|.|.|||
T Consensus         6 p~v~~~~~~sv~l~W~~P~~~g~~I~~Y~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~frV   85 (107)
T d2ic2a1           6 PNVTRLSDESVMLRWMVPRNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPKWNSELGKSFTASVTDLKPQHTYRFRI   85 (107)
T ss_dssp             CEEEECC---EEEEEEEECCSSCCEEEEEEEEEECC---CCEEEEEEEECCSCSCSSSSEEEEEEEECSCCSSEEEEEEE
T ss_pred             CEEEEEECCEEEEEEEECCCCCCCCEEEEEEEEECCCCCCCEEEEEEEECCCEEEEECCCCEEEEEECCCCCCCEEEEEE
T ss_conf             99999889989999971752467730779999851488840688752002401444136650399989974996999999


Q ss_pred             EECCCCCCCC
Q ss_conf             8516886675
Q 004540          428 VSSNGTTELG  437 (746)
Q Consensus       428 vsF~~~~elg  437 (746)
                      .+++..|+=.
T Consensus        86 ~A~N~~G~s~   95 (107)
T d2ic2a1          86 LAVYSNNDNK   95 (107)
T ss_dssp             EEEETTSCEE
T ss_pred             EEECCCCCCC
T ss_conf             9981898879

>d1wisa1 b.1.2.1 (A:8-118) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.43  E-value=0.00036  Score=45.78  Aligned_cols=82  Identities=15%  Similarity=0.090  Sum_probs=61.2

Q ss_pred             CCCEEEEEEEECEEEEEEECCCCCCCCCCCEEEEEEEECCCCCCCCCC----EEEECCCCEEEEECCCCCEEEEEEEEEC
Q ss_conf             674179998412048999276799999861379876304878899992----4431577313752577660245999851
Q 004540          355 VPNMVKFEDVRATSLTVVLGSEDPSPGNIISYTLWHRRAHEGFPARPT----CTLFAPNTRFVVTGLCPATEYQFKVVSS  430 (746)
Q Consensus       355 ~~~~vrFEevt~tSv~vvL~~~~~s~~~i~Gy~LWhrks~~~y~~ePt----~~~~~p~~r~lvs~L~P~TEY~fkvvsF  430 (746)
                      ++-.+++.+++++||+|-+.-.......|.+|.+.|+...........    .......+.+.|.||.|.|.|.|||.++
T Consensus        13 ~P~~~~~~~~~~~sv~l~W~pp~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~L~p~t~Y~frV~A~   92 (111)
T d1wisa1          13 PPTNLGISNIGPRSVTLQFRPGYDGKTSISRWLVEAQVGVVGEGEEWLLIHQLSNEPDARSMEVPDLNPFTCYSFRMRQV   92 (111)
T ss_dssp             CCEEEEEESCCSSCEEEEEECCCCCSSCCSEEEEEECBSCCSTTSCCEEEEEEESCTTCSEEEECSCCTTSEECCCCEEE
T ss_pred             CCCCCEEEECCCCEEEEEEECCCCCCCCEEEEEEEEEECCCCCCCCEEEEEEEECCCCEEEEEECCCCCCCEEEEEEEEE
T ss_conf             89877999818997999984788787751677876420356787520130244135614089869999999999999998


Q ss_pred             CCCCCC
Q ss_conf             688667
Q 004540          431 NGTTEL  436 (746)
Q Consensus       431 ~~~~el  436 (746)
                      +..|.=
T Consensus        93 N~~G~s   98 (111)
T d1wisa1          93 NIVGTS   98 (111)
T ss_dssp             CSSCBC
T ss_pred             CCCCCC
T ss_conf             398697

>d2d9qb2 b.1.2.1 (B:204-308) Granulocyte colony-stimulating factor (GC-SF) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Granulocyte colony-stimulating factor (GC-SF) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.39  E-value=0.00027  Score=46.75  Aligned_cols=78  Identities=15%  Similarity=0.093  Sum_probs=60.1

Q ss_pred             EEEEEEEECEEEEEEECCCCCCCCCCCEEEEEEEECCCCCCCCCCEEEECCCCEEEEECCCCCEEEEEEEEECCCCCC
Q ss_conf             179998412048999276799999861379876304878899992443157731375257766024599985168866
Q 004540          358 MVKFEDVRATSLTVVLGSEDPSPGNIISYTLWHRRAHEGFPARPTCTLFAPNTRFVVTGLCPATEYQFKVVSSNGTTE  435 (746)
Q Consensus       358 ~vrFEevt~tSv~vvL~~~~~s~~~i~Gy~LWhrks~~~y~~ePt~~~~~p~~r~lvs~L~P~TEY~fkvvsF~~~~e  435 (746)
                      .......++++|+|-..-.......+.+|.|=||.....-.-........+++.+.|++|.|.|.|.|||.+.+..|.
T Consensus        12 ~p~~~~~~~~~v~l~W~pp~~~~~~~~~y~i~y~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~frVra~n~~g~   89 (105)
T d2d9qb2          12 SPEAAPPQAGCLQLSWEPWQPGLHINQKCELRHKPQRGEASWALVGPLPLEALQYELCGLLPATAYTLQIRCIRWPLP   89 (105)
T ss_dssp             -------CCSCEEEEEECCGGGTTSCEEEEEEEEESSSCCCCEEEEEECSCEEEEEECSCCSCCCEEEEEEEEECSSC
T ss_pred             CCEEECCCCCEEEEEECCCCCCCCEEEEEEEEEEECCCCCCEEEEECCCCCCCEEEEECCCCCEEEEEEEEEEECCCC
T ss_conf             988644899949999769988993017999988703786502564204577542287034599578999999858988

>d1k85a_ b.1.2.1 (A:) Fibronectin type III domain from chitinase A1. {Bacillus circulans [TaxId: 1397]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type III domain from chitinase A1.
species: Bacillus circulans [TaxId: 1397]

Probab=97.33  E-value=0.00083  Score=43.21  Aligned_cols=73  Identities=16%  Similarity=0.299  Sum_probs=56.4

Q ss_pred             CCEEEEEEEECEEEEEEECCCCCCCCCCCEEEEEEEECCCCCCCCCCEEEECCCCEEEEECCCCCEEEEEEEEECCCCCC
Q ss_conf             74179998412048999276799999861379876304878899992443157731375257766024599985168866
Q 004540          356 PNMVKFEDVRATSLTVVLGSEDPSPGNIISYTLWHRRAHEGFPARPTCTLFAPNTRFVVTGLCPATEYQFKVVSSNGTTE  435 (746)
Q Consensus       356 ~~~vrFEevt~tSv~vvL~~~~~s~~~i~Gy~LWhrks~~~y~~ePt~~~~~p~~r~lvs~L~P~TEY~fkvvsF~~~~e  435 (746)
                      +-.+++.+++++||+|-+.... ....|.||.++....         .+.....+.|.|.||.|.|+|.|+|.+++..|.
T Consensus         7 P~~l~~~~~~~~sv~lsW~~p~-~~~~i~~Y~i~~~~~---------~~~~~~~t~~~~~~L~p~t~Y~~~V~A~n~~G~   76 (88)
T d1k85a_           7 PTNLASTAQTTSSITLSWTAST-DNVGVTGYDVYNGTA---------LATTVTGTTATISGLAADTSYTFTVKAKDAAGN   76 (88)
T ss_dssp             CEEEEEEEECSSCEEEEEECCS-CCSSEEEEEEEESSS---------EEEEESSSEEEECCCCSSCEEEEEEEEEETTTE
T ss_pred             CCCCEEEEECCCEEEEEEECCC-CCCCEEEEEEECCCE---------EEEECCCCEEEECCCCCCCEEEEEEEEEECCCC
T ss_conf             9976999926997999983887-789878999970524---------877528999998887999989999999989799


Q ss_pred             CCC
Q ss_conf             752
Q 004540          436 LGR  438 (746)
Q Consensus       436 lg~  438 (746)
                      .+.
T Consensus        77 ~s~   79 (88)
T d1k85a_          77 VSA   79 (88)
T ss_dssp             ECC
T ss_pred             CCC
T ss_conf             489

>d1wk0a_ b.1.2.1 (A:) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.33  E-value=0.0007  Score=43.76  Aligned_cols=85  Identities=15%  Similarity=0.207  Sum_probs=60.2

Q ss_pred             EEEEEECEEEEEEECCCCCC---------CCCCCEEEEEEEECCCCCCCCCCEEEECCCCEEEEECCCCCEEEEEEEEEC
Q ss_conf             99984120489992767999---------998613798763048788999924431577313752577660245999851
Q 004540          360 KFEDVRATSLTVVLGSEDPS---------PGNIISYTLWHRRAHEGFPARPTCTLFAPNTRFVVTGLCPATEYQFKVVSS  430 (746)
Q Consensus       360 rFEevt~tSv~vvL~~~~~s---------~~~i~Gy~LWhrks~~~y~~ePt~~~~~p~~r~lvs~L~P~TEY~fkvvsF  430 (746)
                      ...+|+++|++|-+.-....         ...+.+|.+.++.....  ....-++....+.+.|.||+|.|+|.|+|.++
T Consensus        25 ~V~~v~~~sv~l~W~~P~~~~~~~~~~~~~~~~~~y~v~~~~~~~~--~~~~~~~~~~~~~~~i~~L~P~t~Y~f~V~A~  102 (137)
T d1wk0a_          25 VASDIQARTVVLTWSPPSSLINGETDESSVPELYGYEVLISSTGKD--GKYKSVYVGEETNITLNDLKPAMDYHAKVQAE  102 (137)
T ss_dssp             EEESCCSSCEEEECCCCCCCSTTSSCSSCSCSCCEEEEEECSSCTT--SCCEEEEEESCSEEEECSCCTTCEECEEEEEE
T ss_pred             EEEEEECCEEEEEEECCCCCCCCEEECCCCCEEEEEEEEEEECCCC--CCEEEEEECCCCEEEECCCCCCCEEEEEEEEE
T ss_conf             9999675889999958275787205056321687668999568999--65899980686699989999886899999997


Q ss_pred             CCCCCCCCEE-EEEECC
Q ss_conf             6886675214-687507
Q 004540          431 NGTTELGRCE-IWFSTG  446 (746)
Q Consensus       431 ~~~~elg~~E-~k~~T~  446 (746)
                      ++.|+=-.++ +.+.|.
T Consensus       103 n~~G~g~~S~~~~~~T~  119 (137)
T d1wk0a_         103 YNSIKGTPSEAEIFTTL  119 (137)
T ss_dssp             ETTEECCCCCCCCEECC
T ss_pred             CCCCCCCCCCCEEEECC
T ss_conf             49943379898998978

>d1wj3a_ b.1.2.1 (A:) Contactin 3 (KIAA1496) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Contactin 3 (KIAA1496)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.30  E-value=0.0011  Score=42.26  Aligned_cols=84  Identities=11%  Similarity=0.109  Sum_probs=62.1

Q ss_pred             CEEEEEEEECEEEEEEECCCCC--CCCCCCEEEEEEEECCCCCCCCCCEEEECCCCEEEEECCCCCEEEEEEEEECCCCC
Q ss_conf             4179998412048999276799--99986137987630487889999244315773137525776602459998516886
Q 004540          357 NMVKFEDVRATSLTVVLGSEDP--SPGNIISYTLWHRRAHEGFPARPTCTLFAPNTRFVVTGLCPATEYQFKVVSSNGTT  434 (746)
Q Consensus       357 ~~vrFEevt~tSv~vvL~~~~~--s~~~i~Gy~LWhrks~~~y~~ePt~~~~~p~~r~lvs~L~P~TEY~fkvvsF~~~~  434 (746)
                      ..+....+++++++|-++...+  ....|.||+|+|+.....     .-.+...++.+.+.+|.|.|+|.|||.++|..|
T Consensus        22 p~~~~~~~~~~~i~v~W~~~~~~~~~g~i~~Y~v~y~~~~~~-----~~~~~~~~~~~~~~~L~p~t~Y~~~V~A~n~~G   96 (117)
T d1wj3a_          22 PGNVVWNATDTKVLLNWEQVKAMENESEVTGYKVFYRTSSQN-----NVQVLNTNKTSAELVLPIKEDYIIEVKATTDGG   96 (117)
T ss_dssp             CCSCBCCEETTEEEEECCCCCCCSSSCCEEEEEEEEEESSCS-----SCEEEEESSSEEEEECCCSSCEEEEEEEEESSC
T ss_pred             CCCEEEEECCCEEEEEEEECCCCCCCCCEEEEEEEEEECCCC-----CEEEEECEEEEEEEECCCCCEEEEEEEEECCCC
T ss_conf             854488614777999985020136887356899999855877-----504410002578865069968999999981992


Q ss_pred             CCCCEE-EEEEC
Q ss_conf             675214-68750
Q 004540          435 ELGRCE-IWFST  445 (746)
Q Consensus       435 elg~~E-~k~~T  445 (746)
                      +=-.+| +.+.+
T Consensus        97 ~G~~S~~v~v~~  108 (117)
T d1wj3a_          97 DGTSSEQIRIPR  108 (117)
T ss_dssp             CCCBCCCEEECC
T ss_pred             CCCCCCCEEEEC
T ss_conf             678989899762

>d1bqua2 b.1.2.1 (A:100-214) Cytokine receptor gp130 cytokine-binding domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Cytokine receptor gp130 cytokine-binding domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.29  E-value=0.00023  Score=47.20  Aligned_cols=78  Identities=18%  Similarity=0.239  Sum_probs=59.4

Q ss_pred             EEEEEEEECEEEEEEECCCCCCCCCCCEEEEEEEECCCC-CCCCCCEEEECCCCEEEEECCCCCEEEEEEEEECCCCCC
Q ss_conf             179998412048999276799999861379876304878-899992443157731375257766024599985168866
Q 004540          358 MVKFEDVRATSLTVVLGSEDPSPGNIISYTLWHRRAHEG-FPARPTCTLFAPNTRFVVTGLCPATEYQFKVVSSNGTTE  435 (746)
Q Consensus       358 ~vrFEevt~tSv~vvL~~~~~s~~~i~Gy~LWhrks~~~-y~~ePt~~~~~p~~r~lvs~L~P~TEY~fkvvsF~~~~e  435 (746)
                      .+...+++++||+|-+.........+.+|.|-||..... ............++.+.|++|.|.|.|.|||.+++..|.
T Consensus        12 ~v~~~~~~~~si~v~W~~p~~~~~~~~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~t~Y~~~V~a~~~~G~   90 (115)
T d1bqua2          12 SVINSEELSSILKLTWTNPSIKSVIILKYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGK   90 (115)
T ss_dssp             EEECC--CCSCEEEEEECCGGGGTSCEEEEEEEEETTCSSCEECCGGGGCSCCSEEEECSCCSSEEEEEEEEEEETTSC
T ss_pred             EEEEECCCCCEEEEEEEECCCCCCCEEEEEEEEEEEEEEEEECCCCCCCCCCCCEEEECCCCCCCEEEEEEEEEECCCC
T ss_conf             8889615798999999614543211332333311100000000110002465237860899638688999999859973

>d1uena_ b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA0343 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.24  E-value=0.0016  Score=41.12  Aligned_cols=92  Identities=22%  Similarity=0.257  Sum_probs=66.5

Q ss_pred             CCCEEEEEEEECEEEEEEECCCCC--CCCCCCEEEEEEEECCCC--CCCCCCE----EEECCCCEEEEECCCCCEEEEEE
Q ss_conf             674179998412048999276799--999861379876304878--8999924----43157731375257766024599
Q 004540          355 VPNMVKFEDVRATSLTVVLGSEDP--SPGNIISYTLWHRRAHEG--FPARPTC----TLFAPNTRFVVTGLCPATEYQFK  426 (746)
Q Consensus       355 ~~~~vrFEevt~tSv~vvL~~~~~--s~~~i~Gy~LWhrks~~~--y~~ePt~----~~~~p~~r~lvs~L~P~TEY~fk  426 (746)
                      ++-.++.+.+++++|+|-++....  ....|.+|.+-++.....  .....+.    ++....+.+.|.+|.|.|.|.||
T Consensus        17 ~P~~v~v~~~~~~si~l~W~~p~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~   96 (125)
T d1uena_          17 APGNVRVNVVNSTLAEVHWDPVPLKSIRGHLQGYRIYYWKTQSSSKRNRRHIEKKILTFQGSKTHGMLPGLEPFSHYTLN   96 (125)
T ss_dssp             CCSSCEEEEEETTEEEEECCCCCHHHHCSCEEEEEEEEEEESCCCCSTTCCCCEEEEEEESSCSEEEEESCCSSCEEEEE
T ss_pred             CCCCCEEEEECCCEEEEEEECCCCCCCCCCEEEEEEEEEEECCCCCCEEECCCCEEEEECCCCCEEEECCCCCCCEEEEE
T ss_conf             98063999814998999995736778996366677688860377641000133057894798039998998999889999


Q ss_pred             EEECCCCCCCCCE-EEEEECC
Q ss_conf             9851688667521-4687507
Q 004540          427 VVSSNGTTELGRC-EIWFSTG  446 (746)
Q Consensus       427 vvsF~~~~elg~~-E~k~~T~  446 (746)
                      |.+++..|+-.-+ .+.+.|.
T Consensus        97 V~A~n~~G~g~~S~~~~~~T~  117 (125)
T d1uena_          97 VRVVNGKGEGPASPDRVFNTP  117 (125)
T ss_dssp             EEEEESSCEEEECCCEEEECC
T ss_pred             EEEEECCCCCCCCCCEEEECC
T ss_conf             999809946689899998899

>d1cd9b2 b.1.2.1 (B:108-213) Granulocyte colony-stimulating factor (GC-SF) receptor {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Granulocyte colony-stimulating factor (GC-SF) receptor
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.18  E-value=0.0006  Score=44.23  Aligned_cols=78  Identities=14%  Similarity=0.057  Sum_probs=58.9

Q ss_pred             EEEEEEEECEEEEEEECCCCCCCCCCCEEEEEEEECCCCCCCCCCEEEECCCCEEEEECCCCCEEEEEEEEECCCCCC
Q ss_conf             179998412048999276799999861379876304878899992443157731375257766024599985168866
Q 004540          358 MVKFEDVRATSLTVVLGSEDPSPGNIISYTLWHRRAHEGFPARPTCTLFAPNTRFVVTGLCPATEYQFKVVSSNGTTE  435 (746)
Q Consensus       358 ~vrFEevt~tSv~vvL~~~~~s~~~i~Gy~LWhrks~~~y~~ePt~~~~~p~~r~lvs~L~P~TEY~fkvvsF~~~~e  435 (746)
                      ........+++|+|..+-.......+.+|.|=||.....-.-+.......+.+.|.|.+|.|.|+|.|||-+.+..|+
T Consensus        13 ~p~~~~~~~~~i~v~W~pp~~~~~~~~~Y~i~y~~~~~~~~w~~v~~~~~~~~~~~l~~L~p~t~Y~frVra~~~~g~   90 (106)
T d1cd9b2          13 GPDVVSHQPGCLWLSWKPWKPSEYMEQECELRYQPQLKGANWTLVFHLPSSKDQFELCGLHQAPVYTLQMRCIRSSLP   90 (106)
T ss_dssp             -------CCSCEEEEEECCGGGTTSCEEEEEEEEESSTTCCCEEEEEEESCEEEEEECCCCSCSCEEEEEEEEESSSC
T ss_pred             CCEEECCCCCEEEEEECCCCCCCCCCEEEEEEEEECCCCCCCEEEECCCCCCEEEEEECCCCCEEEEEEEEEEECCCC
T ss_conf             985863799979999749645786325899998602245641242103478649998435799189999999808998

>d1bqua1 b.1.2.1 (A:5-99) Cytokine receptor gp130 cytokine-binding domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Cytokine receptor gp130 cytokine-binding domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.82  E-value=0.0018  Score=40.82  Aligned_cols=77  Identities=9%  Similarity=-0.057  Sum_probs=60.0

Q ss_pred             CEEEEEEEECEEEEEEECCCCCCCCCCCEEEEEEEECCCC-CCCCCCEEEECCCCEEEEECCCCCEEEEEEEEECCCCCC
Q ss_conf             4179998412048999276799999861379876304878-899992443157731375257766024599985168866
Q 004540          357 NMVKFEDVRATSLTVVLGSEDPSPGNIISYTLWHRRAHEG-FPARPTCTLFAPNTRFVVTGLCPATEYQFKVVSSNGTTE  435 (746)
Q Consensus       357 ~~vrFEevt~tSv~vvL~~~~~s~~~i~Gy~LWhrks~~~-y~~ePt~~~~~p~~r~lvs~L~P~TEY~fkvvsF~~~~e  435 (746)
                      --++...++.+|+++-..-.. ..+..++|.|+|+..... +.  .......+.+.+++.+|.|.|.|.|+|.++|..|.
T Consensus         8 ~n~~~~~~~~~si~~~W~p~~-~~~~~~~y~v~~~~~~~~~~~--~~~~~~~~~~~~~~~~L~~~~~Y~f~V~A~N~~G~   84 (95)
T d1bqua1           8 KNLSCIVNEGKKMRCEWDGGR-ETHLETNFTLKSEWATHKFAD--CKAKRDTPTSCTVDYSTVYFVNIEVWVEAENALGK   84 (95)
T ss_dssp             EEEEEEEETTSCCEEEEECCS-CCSSCCEEEEEEEETTEECCC--EECCSSCTTEEECSSCCCTTSCEEEEEEEEETTEE
T ss_pred             EEEEEEECCCCEEEEEEECCC-CCCCCEEEEEEEEECCCCEEE--EECCCCCCEEEEEEEECCCCCEEEEEEEEEECCCC
T ss_conf             601999854998999986762-589850799999974531157--60003663015116116899689999999938956


Q ss_pred             C
Q ss_conf             7
Q 004540          436 L  436 (746)
Q Consensus       436 l  436 (746)
                      -
T Consensus        85 s   85 (95)
T d1bqua1          85 V   85 (95)
T ss_dssp             E
T ss_pred             C
T ss_conf             2

>d3d48r2 b.1.2.1 (R:101-204) Prolactin receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Prolactin receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.80  E-value=0.0016  Score=41.21  Aligned_cols=77  Identities=13%  Similarity=0.106  Sum_probs=57.6

Q ss_pred             EEEEEECEEEEEEECCCCC----CCCCCCEEEEEEEECCCCCCCCCCEEEECCCCEEEEECCCCCEEEEEEEEECCCCCC
Q ss_conf             9998412048999276799----999861379876304878899992443157731375257766024599985168866
Q 004540          360 KFEDVRATSLTVVLGSEDP----SPGNIISYTLWHRRAHEGFPARPTCTLFAPNTRFVVTGLCPATEYQFKVVSSNGTTE  435 (746)
Q Consensus       360 rFEevt~tSv~vvL~~~~~----s~~~i~Gy~LWhrks~~~y~~ePt~~~~~p~~r~lvs~L~P~TEY~fkvvsF~~~~e  435 (746)
                      +..+++.++|+|-......    ...-+..|.+.++.....   .-........+.+.|.||.|.|+|.|||-++++.|.
T Consensus        14 ~~~~~~~~~l~v~W~pP~~~~~~~~~~~~~Y~~~~~~~~~~---~~~~~~~~~~~~~~i~~L~p~t~Y~~rVrA~n~~G~   90 (104)
T d3d48r2          14 KQPEDRKPYLWIKWSPPTLIDLKTGWFTLLYEIRLKPEKAA---EWEIHFAGQQTEFKILSLHPGQKYLVQVRCKPDHGY   90 (104)
T ss_dssp             C------CCEEEEEECCTTCCCTTSSCCEEEEEEEEETTCS---SCEEEEEETCSEEEECC--CCCEEEEEEEEEESSSC
T ss_pred             EECCCCCCEEEEEEECCCCCCCCCCCEEEEEEECCCCCCCC---CEEEECCCCCCEEEECCCCCCCEEEEEEEEEECCCC
T ss_conf             85367899699998489531589986799976102245434---214401366267998988889889999999859899


Q ss_pred             CCCE
Q ss_conf             7521
Q 004540          436 LGRC  439 (746)
Q Consensus       436 lg~~  439 (746)
                      .|.|
T Consensus        91 ws~w   94 (104)
T d3d48r2          91 WSAW   94 (104)
T ss_dssp             CCCC
T ss_pred             CCCC
T ss_conf             8999

>d1cd9b1 b.1.2.1 (B:1-107) Granulocyte colony-stimulating factor (GC-SF) receptor {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Granulocyte colony-stimulating factor (GC-SF) receptor
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.79  E-value=0.0058  Score=37.18  Aligned_cols=85  Identities=13%  Similarity=-0.027  Sum_probs=57.3

Q ss_pred             EE-EEEEECEEEEEEECCCCCCCCCCCEEEEEEEECCCC-CCCCCCEE---E--ECCCCEEEEECCCCCEEEEEEEEECC
Q ss_conf             79-998412048999276799999861379876304878-89999244---3--15773137525776602459998516
Q 004540          359 VK-FEDVRATSLTVVLGSEDPSPGNIISYTLWHRRAHEG-FPARPTCT---L--FAPNTRFVVTGLCPATEYQFKVVSSN  431 (746)
Q Consensus       359 vr-FEevt~tSv~vvL~~~~~s~~~i~Gy~LWhrks~~~-y~~ePt~~---~--~~p~~r~lvs~L~P~TEY~fkvvsF~  431 (746)
                      ++ ..+++.++|++-+.-. ......+.|.++|+..... -.......   .  ....+.|.+.+|.|.|+|.|||.+.+
T Consensus        11 v~~i~~~~~~sv~~sW~p~-~d~~~~~~y~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~t~Y~frV~A~N   89 (107)
T d1cd9b1          11 LSCLMHLTTNSLVCQWEPG-PETHLPTSFILKSFRSRADCQYQGDTIPDCVAKKRQNNCSIPRKNLLLYQYMAIWVQAEN   89 (107)
T ss_dssp             EEEEEETTTTEEEEEEECC-SCCSSCCEEEEEEEECCGGGCSCCCEEEEEECCTTCCEEEEEGGGCCTTSCEEEEEEEEE
T ss_pred             CEEEEECCCCEEEEEECCC-CCCCCCCCEEEEEEEEECCCCEEEEEEEEECCCCCCCCCEEECCCCCCCCEEEEEEEEEE
T ss_conf             9898966998899998089-889987412678998502542000014321123676401777278775766999999993


Q ss_pred             CCCCCCCEEEEEEC
Q ss_conf             88667521468750
Q 004540          432 GTTELGRCEIWFST  445 (746)
Q Consensus       432 ~~~elg~~E~k~~T  445 (746)
                      ..|+-. ++.-+++
T Consensus        90 ~~G~s~-S~~~~~~  102 (107)
T d1cd9b1          90 MLGSSE-SPKLCLD  102 (107)
T ss_dssp             TTEEEE-CCCEEEC
T ss_pred             CCCCCC-CCCEECC
T ss_conf             786242-8878905

>d1iarb2 b.1.2.1 (B:97-197) Interleukin-4 receptor alpha chain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-4 receptor alpha chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.74  E-value=0.0012  Score=42.03  Aligned_cols=80  Identities=14%  Similarity=0.134  Sum_probs=57.7

Q ss_pred             CCEEEEEEEECEEEEEEECCCCC---CCCCCCEEEEEEEECCCC-CCCCCCEEEECCCCEEEEECCCCCEEEEEEEEECC
Q ss_conf             74179998412048999276799---999861379876304878-89999244315773137525776602459998516
Q 004540          356 PNMVKFEDVRATSLTVVLGSEDP---SPGNIISYTLWHRRAHEG-FPARPTCTLFAPNTRFVVTGLCPATEYQFKVVSSN  431 (746)
Q Consensus       356 ~~~vrFEevt~tSv~vvL~~~~~---s~~~i~Gy~LWhrks~~~-y~~ePt~~~~~p~~r~lvs~L~P~TEY~fkvvsF~  431 (746)
                      +--+.++.+++++++|-......   .......|.+-|+...+. -...-......+.+.+.|.+|.|.|+|.|||-+.+
T Consensus         5 P~~l~v~~~~~~s~~v~W~~P~~~~~~~~~~~~y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~rVrA~~   84 (101)
T d1iarb2           5 PGNLTVHTNVSDTLLLTWSNPYPPDNYLYNHLTYAVNIWSENDPADFRIYNVTYLEPSLRIAASTLKSGISYRARVRAWA   84 (101)
T ss_dssp             CEEEEEC----CCEEEEEECSSCTTSTTGGGCEEEEEEEESSSCSCEEEEEECSSCCEEEECC-----CCCEEEEEEEEC
T ss_pred             CCCCEEEEEECCEEEEEECCCCCCCCCCCEEEEEEEEEECCCCEEEEEEEEECCCCCCEEEEECCCCCCCEEEEEEEEEC
T ss_conf             89679999729919999732357999331035778852012320001112101576324999799999978999999973


Q ss_pred             CCCC
Q ss_conf             8866
Q 004540          432 GTTE  435 (746)
Q Consensus       432 ~~~e  435 (746)
                      +.|.
T Consensus        85 ~~g~   88 (101)
T d1iarb2          85 QAYN   88 (101)
T ss_dssp             GGGT
T ss_pred             CCCC
T ss_conf             8988

>d1n26a3 b.1.2.1 (A:196-299) Interleukin-6 receptor alpha chain, domains 2 and 3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-6 receptor alpha chain, domains 2 and 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.64  E-value=0.0085  Score=36.02  Aligned_cols=76  Identities=11%  Similarity=0.044  Sum_probs=56.5

Q ss_pred             EEEEEEEE--CEEEEEEECCCCC--CCCCCCEEEEEEEECCCCCCCCCCEEEECCCCEEEEECCCCCEEEEEEEEECCCC
Q ss_conf             17999841--2048999276799--9998613798763048788999924431577313752577660245999851688
Q 004540          358 MVKFEDVR--ATSLTVVLGSEDP--SPGNIISYTLWHRRAHEGFPARPTCTLFAPNTRFVVTGLCPATEYQFKVVSSNGT  433 (746)
Q Consensus       358 ~vrFEevt--~tSv~vvL~~~~~--s~~~i~Gy~LWhrks~~~y~~ePt~~~~~p~~r~lvs~L~P~TEY~fkvvsF~~~  433 (746)
                      .+....|.  +.+|.|-.+....  ....+..|.+.|+.....  ..-+..+...++.+.|.+|.|.|.|.|||-+++..
T Consensus         7 ~l~v~~~~~~~~~l~v~W~~P~~~~~~~~~~~y~v~~~~~~~~--~~~~~~~~~~~~~~~i~~L~p~t~Y~~rVra~n~~   84 (104)
T d1n26a3           7 NITVTAVARNPRWLSVTWQDPHSWNSSFYRLRFELRYRAERSK--TFTTWMVKDLQHHCVIHDAWSGLRHVVQLRAQEEF   84 (104)
T ss_dssp             EEEEEECTTCTTCEEEEEECCTTCCCSSSCEEEEEEEEETTCS--CCEEEECGGGCSEEEESSCCTTCCEEEEEEEEETT
T ss_pred             CCEEEEEECCCCEEEEEEEEEEECCCCCEEEEEEEEEEECCCC--CEEEECCCCCEEEEEECCCCCCCEEEEEEEEEECC
T ss_conf             8799998269988999987310169994669999999627997--11111344633799989998998899999997389


Q ss_pred             CC
Q ss_conf             66
Q 004540          434 TE  435 (746)
Q Consensus       434 ~e  435 (746)
                      |.
T Consensus        85 g~   86 (104)
T d1n26a3          85 GQ   86 (104)
T ss_dssp             TB
T ss_pred             CC
T ss_conf             84

>d2dtge1 b.1.2.1 (E:808-909) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.53  E-value=0.00016  Score=48.35  Aligned_cols=83  Identities=18%  Similarity=0.201  Sum_probs=61.2

Q ss_pred             EEEEEEEECEEEEEEECCCCCCCCCCCEEEEEEEECCCC-CCCCCCEEEECCCCEEEEECCCCCEEEEEEEEECCCCCCC
Q ss_conf             179998412048999276799999861379876304878-8999924431577313752577660245999851688667
Q 004540          358 MVKFEDVRATSLTVVLGSEDPSPGNIISYTLWHRRAHEG-FPARPTCTLFAPNTRFVVTGLCPATEYQFKVVSSNGTTEL  436 (746)
Q Consensus       358 ~vrFEevt~tSv~vvL~~~~~s~~~i~Gy~LWhrks~~~-y~~ePt~~~~~p~~r~lvs~L~P~TEY~fkvvsF~~~~el  436 (746)
                      .++++.+.++||+|-+.........|.||++.||..... -...-+.......+.+.+.+|.|.| |.|||.++|..|+=
T Consensus        10 ~v~~~~~~~~sv~l~W~pP~~~ng~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~t-Y~~rV~A~n~~G~g   88 (102)
T d2dtge1          10 PVTHEIFENNVVHLMWQEPKEPNGLIVLYEVSYRRYGDEELHLCDTRKHFALERGCRLRGLSPGN-YSVRIRATSLAGNG   88 (102)
T ss_dssp             CCCCCSSSSSCCCCCCCCCCSCSSCEEEECCCCBSSSBCCCCCCCCSSSCCCTTCCCCCSCCSSE-ECCCCCEEETTBCC
T ss_pred             CCEEEEECCCEEEEEEEECCCCCCEEEEEEEEEEECCCCCCEEEEEEECCCCEEEEEEECCCEEE-EEEEEEEECCCCCC
T ss_conf             98999978898999998288786227886557883489873156664023424799992340421-99999998699268


Q ss_pred             CCEEE
Q ss_conf             52146
Q 004540          437 GRCEI  441 (746)
Q Consensus       437 g~~E~  441 (746)
                      -.++.
T Consensus        89 ~~S~~   93 (102)
T d2dtge1          89 SWTEP   93 (102)
T ss_dssp             CCCCC
T ss_pred             CCCCC
T ss_conf             99898

>d2b5ic1 b.1.2.1 (C:130-224) Cytokine receptor common gamma chain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Cytokine receptor common gamma chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.42  E-value=0.029  Score=32.20  Aligned_cols=72  Identities=13%  Similarity=0.137  Sum_probs=55.7

Q ss_pred             CCEEEEEEEECEEEEEEECCCCCCCCCCCEEEEEEEECCCCCCCCCCEEEECCCCEEEEECCCCCEEEEEEEEECCC
Q ss_conf             74179998412048999276799999861379876304878899992443157731375257766024599985168
Q 004540          356 PNMVKFEDVRATSLTVVLGSEDPSPGNIISYTLWHRRAHEGFPARPTCTLFAPNTRFVVTGLCPATEYQFKVVSSNG  432 (746)
Q Consensus       356 ~~~vrFEevt~tSv~vvL~~~~~s~~~i~Gy~LWhrks~~~y~~ePt~~~~~p~~r~lvs~L~P~TEY~fkvvsF~~  432 (746)
                      +--+..++++.++|+|-.....+  ..+.+|.+.|+.....   +-+-+....++.+.|.+|.|.|+|.|||-+=++
T Consensus         6 P~nl~v~~~~~~~v~l~W~~p~~--~~~~~y~v~y~~~~~~---~~~~~~~~~~~~~~~~~L~p~t~Y~frVRa~~~   77 (95)
T d2b5ic1           6 PENLTLHKLSESQLELNWNNRFL--NHCLEHLVQYRTDWDH---SWTEQSVDYRHKFSLPSVDGQKRYTFRVRSRFN   77 (95)
T ss_dssp             CEEEEEEEEETTEEEEEEECSSC--STTCEEEEEEEETTCS---SCEEEEECSSCEEEECSCCTTSCEEEEEEEECC
T ss_pred             CCCCEEEEEECCEEEEEECCCCC--CEEEEEEEEEECCCCC---EEEEEEECCCCEEECCCCCCCCEEEEEEEEEEC
T ss_conf             89889999709979999789987--2367899999727886---036863225230193898999999999998668

>d2gysa4 b.1.2.1 (A:317-416) Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.23  E-value=0.014  Score=34.52  Aligned_cols=74  Identities=14%  Similarity=0.130  Sum_probs=51.8

Q ss_pred             ECEEEEEEECCCCC-CCCCCCEEEEEEEECCCCCCCCCCEEEECCCCEEEEECCCCCEEEEEEEEECCCCCCC-CCE
Q ss_conf             12048999276799-9998613798763048788999924431577313752577660245999851688667-521
Q 004540          365 RATSLTVVLGSEDP-SPGNIISYTLWHRRAHEGFPARPTCTLFAPNTRFVVTGLCPATEYQFKVVSSNGTTEL-GRC  439 (746)
Q Consensus       365 t~tSv~vvL~~~~~-s~~~i~Gy~LWhrks~~~y~~ePt~~~~~p~~r~lvs~L~P~TEY~fkvvsF~~~~el-g~~  439 (746)
                      +..+++|-...... ....+..|.+.|++....-....+ .....++.+.|.+|.|+|.|.|||-+.++.|.+ |.|
T Consensus        16 ~~~s~~l~W~~P~~~~~~~~~~Y~v~y~~~~~~~~~~~~-~~~~~~~~~~l~~L~p~t~Y~~rVRa~~~~g~~~g~W   91 (100)
T d2gysa4          16 DGDSYSLRWETMKMRYEHIDHTFEIQYRKDTATWKDSKT-ETLQNAHSMALPALEPSTRYWARVRVRTSRTGYNGIW   91 (100)
T ss_dssp             --CCCEEEEEC--------CEEEEEEEECSSSCSTTSCE-EEEESCSEEECCCCCSSCCCEEEEEEEECCTTCCBCC
T ss_pred             CCCEEEEEEECCCCCCCCCCEEEEEEEEECCCCEECEEE-CCCCCCEEEEECCCCCCCEEEEEEEEEECCCCCCCCC
T ss_conf             899799988368555886523899998404220100000-1457863999599899980989999998988878876

>d1f6fb2 b.1.2.1 (B:101-203) Prolactin receptor {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Prolactin receptor
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.02  E-value=0.011  Score=35.22  Aligned_cols=78  Identities=17%  Similarity=0.113  Sum_probs=57.9

Q ss_pred             EEEEEEECEEEEEEECCCCCC----CCCCCEEEEEEEECCCCCCCCCCEEEECCCCEEEEECCCCCEEEEEEEEECCCCC
Q ss_conf             799984120489992767999----9986137987630487889999244315773137525776602459998516886
Q 004540          359 VKFEDVRATSLTVVLGSEDPS----PGNIISYTLWHRRAHEGFPARPTCTLFAPNTRFVVTGLCPATEYQFKVVSSNGTT  434 (746)
Q Consensus       359 vrFEevt~tSv~vvL~~~~~s----~~~i~Gy~LWhrks~~~y~~ePt~~~~~p~~r~lvs~L~P~TEY~fkvvsF~~~~  434 (746)
                      +...+...++|+|-.+.....    ...+.+|.+-|+.....   +-.-+....++.+.|.||.|+|+|.|||-+-++.|
T Consensus        13 ~~~~~~~~~~v~vsW~pP~~~~~~~~~~~l~Y~v~~~~~~~~---~~~~~~~~~~~~~~i~~L~p~t~Y~~rVra~~~~G   89 (103)
T d1f6fb2          13 VKQLKDKKTYLWVKWSPPTITDVKTGWFTMEYEIRLKPEEAE---EWEIHFTGHQTQFKVFDLYPGQKYLVQTRCKPDHG   89 (103)
T ss_dssp             EC----CCCCEEEEEECCTTSCTTTTSSCEEEEEEEEESSCS---CCEEEEEETCSEEEECCCCTTCEEEEEEEEEESSS
T ss_pred             EEECCCCCCEEEEEECCCCCCCCCCCCEEEEEEEEEEECCCC---CEEEECCCCEEEEEECCCCCCEEEEEEEEEEECCC
T ss_conf             875245788899998798852589994999999999857984---12311144303898389985629999999985998


Q ss_pred             CCCCE
Q ss_conf             67521
Q 004540          435 ELGRC  439 (746)
Q Consensus       435 elg~~  439 (746)
                      ..|.|
T Consensus        90 ~wS~w   94 (103)
T d1f6fb2          90 YWSRW   94 (103)
T ss_dssp             CCCCC
T ss_pred             CCCCC
T ss_conf             88898

>d1erna2 b.1.2.1 (A:117-221) Erythropoietin (EPO) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Erythropoietin (EPO) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.70  E-value=0.041  Score=31.13  Aligned_cols=78  Identities=13%  Similarity=0.095  Sum_probs=53.8

Q ss_pred             CCEEEEEEE-ECEEEEEEECCCC-CCCCCCCEEEEEEEECCCCCCCCCCEEEECCCCEEEEECCCCCEEEEEEEEECCCC
Q ss_conf             741799984-1204899927679-99998613798763048788999924431577313752577660245999851688
Q 004540          356 PNMVKFEDV-RATSLTVVLGSED-PSPGNIISYTLWHRRAHEGFPARPTCTLFAPNTRFVVTGLCPATEYQFKVVSSNGT  433 (746)
Q Consensus       356 ~~~vrFEev-t~tSv~vvL~~~~-~s~~~i~Gy~LWhrks~~~y~~ePt~~~~~p~~r~lvs~L~P~TEY~fkvvsF~~~  433 (746)
                      +-.+..+.. .++++.|-..... .....+.+|.+-||..... .......+....+.++|.+|.|.|.|.|||-+-++.
T Consensus         8 P~nl~v~~~~~~~~l~v~W~~P~~~~~~~~~~Y~v~y~~~~~~-~~~~~~~~~~~~t~~~i~~L~p~t~Y~~rVRar~~~   86 (105)
T d1erna2           8 PVGLVARLADESGHVVLRWLPPPETPMTSHIRYEVDVSAGNGA-GSVQRVEILEGRTECVLSNLRGRTRYTFAVRARMAE   86 (105)
T ss_dssp             CEEEEEEECCC-CCEEEEEECSSSCSCGGGEEEEEEEEEC-CC-CEEEEEEECTTCCEEEECSCCSSCEEEEEEEEEECS
T ss_pred             CCCCEEEEECCCCCEEEEEEECCCCCCCEEEEEEEEEECCCCC-CCEEEEEECCCCCEEEEECCCCCCEEEEEEEEEECC
T ss_conf             9998999966899199996505456663588999999427998-716877524886689971878996899999998899


Q ss_pred             C
Q ss_conf             6
Q 004540          434 T  434 (746)
Q Consensus       434 ~  434 (746)
                      .
T Consensus        87 ~   87 (105)
T d1erna2          87 P   87 (105)
T ss_dssp             S
T ss_pred             C
T ss_conf             8

>d1axib2 b.1.2.1 (B:131-236) Growth hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Growth hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.53  E-value=0.046  Score=30.75  Aligned_cols=71  Identities=17%  Similarity=0.137  Sum_probs=49.9

Q ss_pred             CEEEEEEECCCCC----CCCCCCEEEEEEEECCCCCCCCCCEEEECCCCEEEEECCCCCEEEEEEEEECCCCCC-CCCE
Q ss_conf             2048999276799----999861379876304878899992443157731375257766024599985168866-7521
Q 004540          366 ATSLTVVLGSEDP----SPGNIISYTLWHRRAHEGFPARPTCTLFAPNTRFVVTGLCPATEYQFKVVSSNGTTE-LGRC  439 (746)
Q Consensus       366 ~tSv~vvL~~~~~----s~~~i~Gy~LWhrks~~~y~~ePt~~~~~p~~r~lvs~L~P~TEY~fkvvsF~~~~e-lg~~  439 (746)
                      ..+|.|-......    ....+..|.+.||.....   .-+.+....++.+.|++|.|+|+|.|||-+.+..+. .|.|
T Consensus        20 ~~~v~vsW~pP~~~~~~~~~~~l~Y~v~y~~~~~~---~w~~~~~~~~~~~~i~~L~~~t~Y~frVRa~~~~~g~ws~w   95 (106)
T d1axib2          20 HADIQVRWEAPRNADIQKGWMVLEYELQYKEVNET---KWKMMDPILTTSVPVYSLKVDKEYEVRVRSKQRNSGNYGEF   95 (106)
T ss_dssp             EEEEEEEEECCTTSCTTTTSCCEEEEEEEEETTCS---SCEECCCBSSSEEEEEEEETTSCEEEEEEEEETTSSCCCCC
T ss_pred             CCEEEEEECCCCCCCCCCCEEEEEEEEEEEECCCC---CCEEEEECCCCEEEECCCCCCCEEEEEEEEEECCCCCCCCC
T ss_conf             57599998698731789982478998866626886---42466431102599897789999999999998999988899

>d2gysa2 b.1.2.1 (A:104-217) Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.88  E-value=0.093  Score=28.57  Aligned_cols=78  Identities=8%  Similarity=0.080  Sum_probs=53.2

Q ss_pred             CCEEEEEEEECEEEEEEECCCCC------CCCCCCEEEEEEEECCCCCCCCCCE-EEECCCCEEEEECCCCCEEEEEEEE
Q ss_conf             74179998412048999276799------9998613798763048788999924-4315773137525776602459998
Q 004540          356 PNMVKFEDVRATSLTVVLGSEDP------SPGNIISYTLWHRRAHEGFPARPTC-TLFAPNTRFVVTGLCPATEYQFKVV  428 (746)
Q Consensus       356 ~~~vrFEevt~tSv~vvL~~~~~------s~~~i~Gy~LWhrks~~~y~~ePt~-~~~~p~~r~lvs~L~P~TEY~fkvv  428 (746)
                      +.-+.+ .++.++++|-......      ....+..|.+-|+..... ..+-.. ..-.+.+.+.+.+|.|.|+|.|||-
T Consensus         9 P~nl~v-~~~~~~~~lsW~~P~~~~~~~~~~~~~~~y~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~L~p~t~Y~~rVR   86 (114)
T d2gysa2           9 PRDLQI-STDQDHFLLTWSVALGSPQSHWLSPGDLEFEVVYKRLQDS-WEDAAILLSNTSQATLGPEHLMPSSTYVARVR   86 (114)
T ss_dssp             CEEEEE-EEETTEEEEEEECCC-----CCSCGGGEEEEEEEEETTSC-STTCEEEEESSSEEEECTTTCCTTCEEEEEEE
T ss_pred             CCCEEE-EEECCEEEEECCCCCCCCCCCCEEEEEEEEEEEEECCCCC-EEEEEEEECCCCEEEEEECCCCCCCEEEEEEE
T ss_conf             987099-9967979998789730145651124689999999605774-17888750157608999688899968999999


Q ss_pred             ECCCCCC
Q ss_conf             5168866
Q 004540          429 SSNGTTE  435 (746)
Q Consensus       429 sF~~~~e  435 (746)
                      +++..|.
T Consensus        87 a~~~~g~   93 (114)
T d2gysa2          87 TRLAPGS   93 (114)
T ss_dssp             EEECTTS
T ss_pred             EEECCCC
T ss_conf             9857778

>d1uc6a_ b.1.2.1 (A:) Ciliary neurotrophic factor receptor alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ciliary neurotrophic factor receptor alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.09  E-value=0.18  Score=26.59  Aligned_cols=89  Identities=13%  Similarity=0.073  Sum_probs=58.1

Q ss_pred             CEEEEEEE--ECEEEEEEECCCCC---CCCCCCEEEEEEEECCCCCCCCCCEEEECCCCEEEEECCCCCEEEEEEEEECC
Q ss_conf             41799984--12048999276799---99986137987630487889999244315773137525776602459998516
Q 004540          357 NMVKFEDV--RATSLTVVLGSEDP---SPGNIISYTLWHRRAHEGFPARPTCTLFAPNTRFVVTGLCPATEYQFKVVSSN  431 (746)
Q Consensus       357 ~~vrFEev--t~tSv~vvL~~~~~---s~~~i~Gy~LWhrks~~~y~~ePt~~~~~p~~r~lvs~L~P~TEY~fkvvsF~  431 (746)
                      -.+.++.+  ++++|+|-.....+   ....+..|.+=|+.....   .-.-+.....+.+.|.+|.|.|+|.|||-+.+
T Consensus        12 ~~l~v~~~~~~~~~l~l~W~~P~~~~~~~~~~~~y~~~~~~~~~~---~~~~~~~~~~~~~~i~~L~~~t~Y~~rVrA~~   88 (109)
T d1uc6a_          12 ENVVARPVPSNPRRLEVTWQTPSTWPDPESFPLKFFLRYRPLILD---QWQHVELSNGTAHTITDAYAGKEYIIQVAAKD   88 (109)
T ss_dssp             EEEEEEECTTCTTCEEEEEECCTTCCCTTTTTBCEEEEEEESSSC---CCCCEEESSCSEEEETTCCSSSCEEEEEECCB
T ss_pred             CCCEEEEEECCCCEEEEEEECCCCCCCCCEEEEEEEEEEEECCCC---CEEEECCCCCEEEEECCCCCCCEEEEEEEEEE
T ss_conf             988999981699989999908850689980699887788306877---14771147730687089988978999999998


Q ss_pred             CC-CCCCCE-EEEEECCCC
Q ss_conf             88-667521-468750766
Q 004540          432 GT-TELGRC-EIWFSTGSS  448 (746)
Q Consensus       432 ~~-~elg~~-E~k~~T~s~  448 (746)
                      .. |..+.| +....|.+.
T Consensus        89 ~~~g~wS~WS~~~~~tt~~  107 (109)
T d1uc6a_          89 NEIGTWSDWSVAAHATPWT  107 (109)
T ss_dssp             SSSCCCCCCCEEEEECCCC
T ss_pred             CCCCCCCCCCCCEEEECCC
T ss_conf             9999837787899757887

>d1fyhb1 b.1.2.1 (B:12-109) Interferon-gamma receptor alpha chain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interferon-gamma receptor alpha chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.55  E-value=0.083  Score=28.95  Aligned_cols=86  Identities=13%  Similarity=0.032  Sum_probs=55.5

Q ss_pred             CCCCCEEEEEEEECEEEEEEECCCCCCCCCCCEEEEEEEECCCC-CCCCCCEE-EECCCCEEEEECCCCCEEEEEEEEEC
Q ss_conf             65674179998412048999276799999861379876304878-89999244-31577313752577660245999851
Q 004540          353 VIVPNMVKFEDVRATSLTVVLGSEDPSPGNIISYTLWHRRAHEG-FPARPTCT-LFAPNTRFVVTGLCPATEYQFKVVSS  430 (746)
Q Consensus       353 l~~~~~vrFEevt~tSv~vvL~~~~~s~~~i~Gy~LWhrks~~~-y~~ePt~~-~~~p~~r~lvs~L~P~TEY~fkvvsF  430 (746)
                      +|++--++++.++... ++-.+..+.....+  |...+...+.. ....+.|. .......+.+.+|.|.+.|.|||-++
T Consensus         1 vP~P~nv~v~s~n~~~-~L~W~pP~~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Y~fRV~A~   77 (98)
T d1fyhb1           1 VPTPTNVTIESYNMNP-IVYWEYQIMPQVPV--FTVEVKNYGVKNSEWIDACINISHHYCNISDHVGDPSNSLWVRVKAR   77 (98)
T ss_dssp             CCCCEEEEEECBSSCC-EEEEECCCCSSCCE--EEEEEEETTCSSSCCEEEEEEESSSEEECGGGCCSTTSCEEEEEEEE
T ss_pred             CCCCCCEEEEEECCCE-EEEECCCCCCCCCC--EEEEEEEECCCCCEEEEEEEECCCCEEEEEECCCCCCCEEEEEEEEE
T ss_conf             9469866899847829-99998988999974--66999995255514688641013420245763467997899999997


Q ss_pred             CCCCCCCCEEE
Q ss_conf             68866752146
Q 004540          431 NGTTELGRCEI  441 (746)
Q Consensus       431 ~~~~elg~~E~  441 (746)
                      ++.|.=--.|.
T Consensus        78 n~~g~S~ws~s   88 (98)
T d1fyhb1          78 VGQKESAYAKS   88 (98)
T ss_dssp             ETTEECCCEEC
T ss_pred             CCCCCCCCCCC
T ss_conf             18953588668

>d2cspa1 b.1.2.1 (A:8-124) Rim binding protein 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Rim binding protein 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.08  E-value=0.014  Score=34.48  Aligned_cols=75  Identities=13%  Similarity=0.096  Sum_probs=50.2

Q ss_pred             EEEEEE-EECEEEEEEECCC-----C-CCCCCCCEEEEEEEECCCCCCCCCCEEEECCCCEEEEECCCCCEEEEEEEEEC
Q ss_conf             179998-4120489992767-----9-99998613798763048788999924431577313752577660245999851
Q 004540          358 MVKFED-VRATSLTVVLGSE-----D-PSPGNIISYTLWHRRAHEGFPARPTCTLFAPNTRFVVTGLCPATEYQFKVVSS  430 (746)
Q Consensus       358 ~vrFEe-vt~tSv~vvL~~~-----~-~s~~~i~Gy~LWhrks~~~y~~ePt~~~~~p~~r~lvs~L~P~TEY~fkvvsF  430 (746)
                      -+..+- ++++|+.|-+.-.     . .....|.+|++++......-..    ......+.+.|+||.|.|+|.|+|.++
T Consensus        16 ~v~v~~~~s~~si~vsW~PP~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~----~~~~~~~~~~i~~L~~~t~Y~v~V~A~   91 (117)
T d2cspa1          16 DVTVQAGVTPATIRVSWRPPVLTPTGLSNGANVTGYGVYAKGQRVAEVI----FPTADSTAVELVRLRSLEAKGVTVRTL   91 (117)
T ss_dssp             EEEECCCSSTTEEEEEEECCCCCTTSCSSSSCEEEEEEESSSSEEEEEC----CTTCSEEEEESHHHHHHTCSCBEEEEE
T ss_pred             CCEEEEECCCCEEEEEECCCCCCCCCCCCCCCEEEEEEEEECCCCEEEE----EECCCEEEEECCCCCCCCEEEEEEEEE
T ss_conf             5399881589899999708973456732344148999986214410200----100230123106899981899999998


Q ss_pred             CCCCCC
Q ss_conf             688667
Q 004540          431 NGTTEL  436 (746)
Q Consensus       431 ~~~~el  436 (746)
                      |..|+=
T Consensus        92 n~~G~s   97 (117)
T d2cspa1          92 SAQGES   97 (117)
T ss_dssp             ESSCCC
T ss_pred             CCCCCC
T ss_conf             389768

>d2dtge2 b.1.2.1 (E:593-807) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.62  E-value=0.058  Score=30.05  Aligned_cols=72  Identities=13%  Similarity=0.074  Sum_probs=49.2

Q ss_pred             CCEEEEEEEECEEEEEEECCCCCCCCCCCEEEEEEEECCCC-CCCCCCEEEECCCCEEEEECCCCCEEEEEEEEECCCCC
Q ss_conf             74179998412048999276799999861379876304878-89999244315773137525776602459998516886
Q 004540          356 PNMVKFEDVRATSLTVVLGSEDPSPGNIISYTLWHRRAHEG-FPARPTCTLFAPNTRFVVTGLCPATEYQFKVVSSNGTT  434 (746)
Q Consensus       356 ~~~vrFEevt~tSv~vvL~~~~~s~~~i~Gy~LWhrks~~~-y~~ePt~~~~~p~~r~lvs~L~P~TEY~fkvvsF~~~~  434 (746)
                      +--++...++++|++|-+.........|.||.|+|+..... ....        .......+|.|.+.|.|++.+++..+
T Consensus         6 P~~~~~~~~s~~si~vsW~pP~~~ng~i~~Y~V~~~~~~~~~~~~~--------~~~~~~~~~~~~~~y~~~v~~~~~~~   77 (196)
T d2dtge2           6 PLDPISVSNSSSQIILKWKPPSDPNGNITHYLVFWERQAEDSELFE--------LDYCLKGLKLPSRTWSPPFESEDSQK   77 (196)
T ss_dssp             CEEEEEEECSSSCEEEEEECCCCSSSSCSEEECCEEEECCCCSCTT--------CSSSCSCCCCCC--------------
T ss_pred             CCCCEEEECCCCEEEEEEECCCCCCCCEEEEEEEEECCCCCCCEEE--------EEEEEECCCCCEEEEEEEEEEECCCC
T ss_conf             9687999663788999997998799867799999971789875268--------76688525116058999998882774


Q ss_pred             C
Q ss_conf             6
Q 004540          435 E  435 (746)
Q Consensus       435 e  435 (746)
                      .
T Consensus        78 ~   78 (196)
T d2dtge2          78 H   78 (196)
T ss_dssp             -
T ss_pred             C
T ss_conf             0

>d1y6kr1 b.1.2.1 (R:2-100) Interleukin-10 receptor 1, IL-10R1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-10 receptor 1, IL-10R1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.00  E-value=0.66  Score=22.51  Aligned_cols=83  Identities=16%  Similarity=0.189  Sum_probs=57.1

Q ss_pred             CCCCCCCEEEEEEEECEEEEEEECCCCCCCCCCCEEEEEEEECCCC-CCCCCCEEE-ECCCCEEEEECCCCCEEEEEEEE
Q ss_conf             8765674179998412048999276799999861379876304878-899992443-15773137525776602459998
Q 004540          351 SNVIVPNMVKFEDVRATSLTVVLGSEDPSPGNIISYTLWHRRAHEG-FPARPTCTL-FAPNTRFVVTGLCPATEYQFKVV  428 (746)
Q Consensus       351 ~~l~~~~~vrFEevt~tSv~vvL~~~~~s~~~i~Gy~LWhrks~~~-y~~ePt~~~-~~p~~r~lvs~L~P~TEY~fkvv  428 (746)
                      ..||++--++++... +..++..+-. +.......|.+=|+..... ....+.|+- ......+.+.+|.+..+|.|||-
T Consensus         2 t~lP~P~nv~~~s~n-~~~~L~W~pp-~~~g~~~~Y~Ve~~~~~~~~W~~v~~c~~~t~~~~~~~~~~l~~~~~Y~fRVr   79 (99)
T d1y6kr1           2 TELPSPPSVWFEAEF-FHHILHWTPI-PQQSESTCYEVALLRYGIESWNSISQCSQTLSYDLTAVTLDLYHSNGYRARVR   79 (99)
T ss_dssp             CCCCCCSCEEEEEET-TEEEEEECCC-TTCCTTCEEEEEEEETTSCCCEEEEEEESSSEEECGGGGTTGGGSSCEEEEEE
T ss_pred             CCCCCCCCCEEEEEC-CEEEEEECCC-CCCCCCCEEEEEEEECCCCCEEEEEEECCCCCCCEEEEEEECCCCCEEEEEEE
T ss_conf             868889732499977-7999998699-87689888999999778763479976656165110145420478988999999


Q ss_pred             ECCCCCC
Q ss_conf             5168866
Q 004540          429 SSNGTTE  435 (746)
Q Consensus       429 sF~~~~e  435 (746)
                      +.++.|.
T Consensus        80 A~n~~g~   86 (99)
T d1y6kr1          80 AVDGSRH   86 (99)
T ss_dssp             EEETTEE
T ss_pred             EECCCCC
T ss_conf             9849971

>d2c4fu1 b.1.2.1 (U:91-210) Extracellular region of human tissue factor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Extracellular region of human tissue factor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.77  E-value=0.49  Score=23.42  Aligned_cols=72  Identities=17%  Similarity=0.157  Sum_probs=49.8

Q ss_pred             CCCCCCCEEEEEEEECEEEEEEECCCCC---------CCCC----CCEEEEEEEECCCCCCCCCCEEEECCCCEEEEECC
Q ss_conf             8765674179998412048999276799---------9998----61379876304878899992443157731375257
Q 004540          351 SNVIVPNMVKFEDVRATSLTVVLGSEDP---------SPGN----IISYTLWHRRAHEGFPARPTCTLFAPNTRFVVTGL  417 (746)
Q Consensus       351 ~~l~~~~~vrFEevt~tSv~vvL~~~~~---------s~~~----i~Gy~LWhrks~~~y~~ePt~~~~~p~~r~lvs~L  417 (746)
                      ++.+.+..|........||.|.+.....         +..+    -.-|+|-||+....         -.-+..+.+.+|
T Consensus        15 ~T~IGPP~v~~~~~~~~sl~V~i~~P~t~~~~~~~~~~~~d~~~~~l~Y~V~~w~~~s~---------~~~~~~~~l~~L   85 (116)
T d2c4fu1          15 ETNLGQPTIQSFEQVGTKVNVTVEDERTLVRRNNTFLSLRDVFGKDLIYTLYYWSGKKT---------AKTNTNEFLIDV   85 (116)
T ss_dssp             HSBCCCCCEEEEEEETTEEEEEECCCEEEEESSSCEEEHHHHHGGGCEEEEEECCCCEE---------EEESSSEEEEEC
T ss_pred             CCEECCCEEEEEECCCCEEEEEEECCCCCCCCCCCEEEHHHHCCCCCEEEEEEEECCCE---------EEEEEEEEEECC
T ss_conf             67868960799966899899999699974357884402436016870999999989934---------788513997378


Q ss_pred             CCCEEEEEEEEECC
Q ss_conf             76602459998516
Q 004540          418 CPATEYQFKVVSSN  431 (746)
Q Consensus       418 ~P~TEY~fkvvsF~  431 (746)
                      .|.|+|||+|=+|-
T Consensus        86 ~p~t~YCv~Vqa~i   99 (116)
T d2c4fu1          86 DKGENYCFSVQAVI   99 (116)
T ss_dssp             CTTCCCEEEEEEEC
T ss_pred             CCCCCEEEEEEEEE
T ss_conf             99995989999996

>d2dtge2 b.1.2.1 (E:593-807) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.69  E-value=0.84  Score=21.75  Aligned_cols=40  Identities=20%  Similarity=0.270  Sum_probs=32.0

Q ss_pred             CCCCEEEECCCCEEEEECCCCCEEEEEEEEECCCCCCCCC
Q ss_conf             9992443157731375257766024599985168866752
Q 004540          399 ARPTCTLFAPNTRFVVTGLCPATEYQFKVVSSNGTTELGR  438 (746)
Q Consensus       399 ~ePt~~~~~p~~r~lvs~L~P~TEY~fkvvsF~~~~elg~  438 (746)
                      ......+....+++.|.||.|.|.|.|+|.+|+..|.-+.
T Consensus       144 ~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~~~~~~  183 (196)
T d2dtge2         144 EHRPFEKVVNKESLVISGLRHFTGYRIELQACNQDTPEER  183 (196)
T ss_dssp             CCSCSCEECSCSEEEECSSCSSCEEEECCEEESCSSSSCC
T ss_pred             CCEEEEECCCEEEEEECCCCCCCEEEEEEEEEECCCCCCC
T ss_conf             5279992165379998998999989999999989998787

>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein 8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.59  E-value=0.11  Score=28.07  Aligned_cols=51  Identities=22%  Similarity=0.432  Sum_probs=33.6

Q ss_pred             EEEECCCCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCC
Q ss_conf             221025337999932786299999999955443446553202553434689864654169806479866
Q 004540          174 CCICRKYDDNKDPSLWLTCSSEPPFGGDSCGMSCHLECALKNERSGIGKDRCYSGLDGSFYCISCRKVN  242 (746)
Q Consensus       174 C~IC~kfD~nkd~~~Wi~C~s~~~~~~~~CghscHleCALr~~~~G~~~~g~~~~lD~~f~C~~Cgk~s  242 (746)
                      +|||.+-++..  -.||.||        .|.-|-|..|.=-...        ....+..|+|..|...+
T Consensus        14 ~CiC~~~~~~~--~~mI~Cd--------~C~~W~H~~C~g~~~~--------~~~~~~~~~C~~C~~~~   64 (79)
T d1wepa_          14 YCLCRQPYNVN--HFMIECG--------LCQDWFHGSCVGIEEE--------NAVDIDIYHCPDCEAVF   64 (79)
T ss_dssp             CSTTSCSCCSS--SCEEEBT--------TTCCEEEHHHHTCCHH--------HHTTCSBBCCTTTTTTS
T ss_pred             EEECCCCCCCC--CCEEECC--------CCCCCEECCCCCCCHH--------CCCCCCEEECCCCCCCC
T ss_conf             84898965999--8688899--------8997396034174510--------27878778995673876