Citrus Sinensis ID: 004542

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740------
MGLPEMAEFSRNFGVLVRVQGPDPKGLKMRRHAFHQYNSGKTTLSASGMLLPLSFFDTKVAERNWGVNGLIVTVASVVEPFLLPQYRDKDTSEGQPELITGSQIDFLVEGKLRSEKEHEDVDKGSPEWVTAQLMMLVDIPVSSLALQSLMEASSGLPEHEWEVGWSLAPYNNSSQPLMGVVKTSIESNKISLMESHRPFAMEESSNLSLMSKSTSRVAILGVSSYLKDLPNIALTPLNKRGDLLLAVGSPFGVLSPMHFFNSVSMGSVANCYPPRSTTRSLLMADIRCLPGMEGGPVFGEHAHFVGILIRPLRQKSGAEIQLVIPWEAIATACSDLLLKEPQNAEKEIHINKGNLNAVGNSLLFNSHILNGACCYKYEHVDSRCRSPLPIQKALASVCLITIDDGVWASGVLLNDQGLILTNAHLLEPWRFGKTTVSGWRNGVSFQPEDSASSGHTGVDQYQKSQTLPPKMPKIVDSSVDEHRAYKLSSFSRGHRKIRVRLDHLDPWIWCDAKIVYVCKGPLDVSLLQLGYIPDQLCPIDADFGQPSLGSAAYVIGHGLFGPRCGLSPSVSSGVVAKVVKANLPSYGQSTLQRNSAYPVMLETTAAVHPGGSGGAVVNLDGHMIGLVTSNARHGGGTVIPHLNFSIPCAVLRPIFEFARDMQEVSLLRKLDEPNKHLASVWALMPPLSPKQGPSLPDLPQAALEDNIEGKGSRFAKFIAERREVLKHSTQVGNAERVSGEIFRSKL
ccHHHHHHHHHccEEEEEEEcccccHHHHHccccccccccccEEEEEEEccccccccccHHHHccccccEEEEEccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccEEEEEcccccccHHHHHHHHHHccccccccccccEEcccccccccccccEEEEEEEEcEEEEccccccccccccccccccccccccEEEEEEEcccccccccccccccccccEEEEEcccccccccccccccEEEEEEEccccccccccccEEEccccccccccccEEccccEEEEEEEccccccccccEEEEEEHHHHHHHHHHHHHccccccccEEHHcccccccccccccccccccccccccccccccccccccHHHHHHcccEEEEEEccccccccEEEcccccEEEcccccccccccEEEccccccccccccccccccccccccccccccccccccccccccEEEccccEEEccccccccEEEEEEccccccccccEEEEEccccccEEEEEEEcccccccccccccccccccccEEEEEccccccccccccccEEEEEEEEEEEcccccccccccccccccccEEEEccccccccccccEEcccccEEEEEEEEccccccccccccEEEccHHHHHHHHHHHHHcccEEEEEEcccccHHHHHHccccccccccccccccccccccccccccccEEEEccHHHHHHHHHccccccccccEEEEEEEcccc
ccHHHHHHHHHHHHEEEEEEcccHHHHHHHHHHHHHHcccccEEEHHHHccccccccHHHHHHHcccccEEEEEEEEEcccccHHHccccccccccccccccEEEEEEEEEEccccccccccccccccHHHHHHHHccccHHHHHHHHHHHccccccccccEEccEEcccccccccccccEEEEEcccccccccccccccccccccHHHHHHHHHHHHHccccccccccccEEEccccccccEEEEEccccccccHHHHHHHHcHcEEEcccccccccccEEEEEccccccccccccccccccEEEEEEcccccccccEEEEEEEHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccEEEEEEcccEEEEEEEEccccEEEEccEEEcccccccccccccccccccccHHccccccccHHHHcccccccccccccccccccccccEEEEEEEccccEEEEEEcccccEEEEccEEEEEccccccEEEEEEcccccccccccccccccccccEEEEEEccccccccccccccccEEEEEEEEEcccccccccccccccccEEEEEEcEEccccccccEEEcccEEEEEEEEccccccccEccccccEEcHHHHHHHHHHHHHcccccEEEccccccccHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccHcHHHHHHccccccc
MGLPEMAEFSRNFGVLVrvqgpdpkglkmrrhafhqynsgkttlsasgmllplsffdtkvaernwgvNGLIVTVASVvepfllpqyrdkdtsegqpelitgsqidflvegklrsekehedvdkgspEWVTAQLMMLVDIPVSSLALQSLMeassglpehewevgwslapynnssqplmGVVKTSIESNKIslmeshrpfameessnlslmskstSRVAILGVSsylkdlpnialtplnkrgdlllavgspfgvlspmhffnsvsmgsvancypprsttRSLLMADirclpgmeggpvfgehaHFVGILirplrqksgaeiqlvipWEAIATACSDLLLKEPQNAEKEIHINKGNLNAVGNSLLFNSHIlngaccykyehvdsrcrsplpIQKALASVCLITiddgvwasgvllndqgliltnahllepwrfgkttvsgwrngvsfqpedsassghtgvdqyqksqtlppkmpkivdssvdehrayklssfsrghrkirvrldhldpwiwcdakivyvckgpldvsllqlgyipdqlcpidadfgqpslgsAAYVIGhglfgprcglspsvssGVVAKVVKAnlpsygqstlqrnsaypvMLETtaavhpggsggavvnlDGHMIGLVTsnarhgggtviphlnfsipcavlRPIFEFARDMQEVSLLRkldepnkhLASVWalmpplspkqgpslpdlpqaaledniegkGSRFAKFIAERREVLKHStqvgnaervsgeIFRSKL
MGLPEMAEFSRNFGVLVRVQGPDPKGLKMRRHAFHQYNSGKTTLSASGMLLPLSFFDTKVAERNWGVNGLIVTVASVVEPFLLPQYRDkdtsegqpelitgsqidflVEGKLrsekehedvdkgSPEWVTAQLMMLVDIPVSSLALQSLMEASSGLPEHEWEVGWSLAPYNNSSQPLMGVVKTSIESNKISLMESHRPFAMEESSNLSLMSKSTSRVAILGVSSYLKDLPNIALTPLNKRGDLLLAVGSPFGVLSPMHFFNSVSMGSVANCYPPRSTTRSLLMADIRCLPGMEGGPVFGEHAHFVGILIRPLRQKSGAEIQLVIPWEAIATACSDLLLKEPQNAEKEIHINKGNLNAVGNSLLFNSHILNGACCYKYEHVDSRCRSPLPIQKALASVCLITIDDGVWASGVLLNDQGLILTNAHLLEPWRFGKTTVSGWRNGVSFQPEDSASSGHTGVDQyqksqtlppkmpKIVDSSVDEHRAyklssfsrghrkirvrldhldpwiWCDAKIVYVCKGPLDVSLLQLGYIPDQLCPIDADFGQPSLGSAAYVIGHGLFGPRCGLSPSVSSGVVAKVVKANLPSYGQSTLQRNSAYPVMLETTAAVHPGGSGGAVVNLDGHMIGLVTSNARHGGGTVIPHLNFSIPCAVLRPIFEFARDMQEVSLLRKLDEPNKHLASVWALMPPLSPKQGPSLPDLPQAALEDNIEGKGSRFAKFIAERRevlkhstqvgnaervsgeifrskl
MGLPEMAEFSRNFGVLVRVQGPDPKGLKMRRHAFHQYNSGKTTLSASGMLLPLSFFDTKVAERNWGVNGLIVTVASVVEPFLLPQYRDKDTSEGQPELITGSQIDFLVEGKLRSEKEHEDVDKGSPEWVTAQLMMLVDIPVSSLALQSLMEASSGLPEHEWEVGWSLAPYNNSSQPLMGVVKTSIESNKISLMESHRPFAmeessnlslmskstsRVAILGVSSYLKDLPNIALTPLNKRGDLLLAVGSPFGVLSPMHFFNSVSMGSVANCYPPRSTTRSLLMADIRCLPGMEGGPVFGEHAHFVGILIRPLRQKSGAEIQLVIPWEAIATACSDLLLKEPQNAEKEIHINKGNLNAVGNSLLFNSHILNGACCYKYEHVDSRCRSPLPIQKALASVCLITIDDGVWASGVLLNDQGLILTNAHLLEPWRFGKTTVSGWRNGVSFQPEDSASSGHTGVDQYQKSQTLPPKMPKIVDSSVDEHRAYKLSSFSRGHRKIRVRLDHLDPWIWCDAKIVYVCKGPLDVSLLQLGYIPDQLCPIDADFGQPSLGSAAYVIGHGLFGPRCGLspsvssgvvakvvkaNLPSYGQSTLQRNSAYPVMLETTAAVHPGGSGGAVVNLDGHMIGLVTSNARHGGGTVIPHLNFSIPCAVLRPIFEFARDMQEVSLLRKLDEPNKHLASVWALMPPLSPKQGPSLPDLPQAALEDNIEGKGSRFAKFIAERREVLKHSTQVGNAERVSGEIFRSKL
***********NFGVLVRV************HAFHQYNSGKTTLSASGMLLPLSFFDTKVAERNWGVNGLIVTVASVVEPFLLPQYR************TGSQIDFLV******************EWVTAQLMMLVDIPVSSLALQSLMEA**GLPEHEWEVGWSLAPYN********************************************RVAILGVSSYLKDLPNIALTPLNKRGDLLLAVGSPFGVLSPMHFFNSVSMGSVANCYPPRSTTRSLLMADIRCLPGMEGGPVFGEHAHFVGILIRPLRQKSGAEIQLVIPWEAIATACSDLLLKEPQNAEKEIHINKGNLNAVGNSLLFNSHILNGACCYKYEHVDSRCRSPLPIQKALASVCLITIDDGVWASGVLLNDQGLILTNAHLLEPWRFGKTTVSGWRNGV**********************************************FSRGHRKIRVRLDHLDPWIWCDAKIVYVCKGPLDVSLLQLGYIPDQLCPIDADFGQPSLGSAAYVIGHGLFGPRCGLSPSVSSGVVAKVVKANLPSYGQSTLQRNSAYPVMLETTAAVHPGGSGGAVVNLDGHMIGLVTSNARHGGGTVIPHLNFSIPCAVLRPIFEFARDMQEVSLLRKLDEPNKHLASVWAL*********************************FI****************************
****E*A*FSRNFGVLVRVQGPDPKGLKMRRHAFHQYNSGKTTLSASGMLLPLSFFDTKVAERNWGVNGLIVTVASVVEPFL*****************TGSQIDFLVE*******************VTAQLMMLVDIPVSSLA*****************VGWSLAPYNNSSQPLMGVVKTSIESNKISLM******************KSTSRVAILGVSSYLKDLPNIALTPLNKRGDLLLAVGSPFGVLSPMHFFNSVSMGSVANCYPPRSTTRSLLMADIRCLPGMEGGPVFGEHAHFVGILIRPLRQKSGAEIQLVIPWEAIATACSDLLLKE***AEKEIHINKGNLNAVGNSLLF****************************ALASVCLITIDDGVWASGVLLNDQGLILTNAHLLEPWR***************************************************HRAYKLSSFSRGHRKIRVRLDHLDPWIWCDAKIVYVCKGPLDVSLLQLGYIPDQLCPIDADFGQPSLGSAAYVIGHGLFGPRCGLSPSVSSGVVAKVVKANLPS*GQSTLQRNSAYPVMLETTAAVHPGGSGGAVVNLDGHMIGLVTSNARHGGGTVIPHLNFSIPCAVLRPIFEFARDMQEVSLLRKLDEPNKHLASVWALMPPL*********************GKGSRFAKFIA****************RVSGEIFRSKL
MGLPEMAEFSRNFGVLVRVQGPDPKGLKMRRHAFHQYNSGKTTLSASGMLLPLSFFDTKVAERNWGVNGLIVTVASVVEPFLLPQYR********PELITGSQIDFLVEGKLR***********SPEWVTAQLMMLVDIPVSSLALQSLM********HEWEVGWSLAPYNNSSQPLMGVVKTSIESNKISLMESHRPFAMEESSNLSLMSKSTSRVAILGVSSYLKDLPNIALTPLNKRGDLLLAVGSPFGVLSPMHFFNSVSMGSVANCYPPRSTTRSLLMADIRCLPGMEGGPVFGEHAHFVGILIRPLRQKSGAEIQLVIPWEAIATACSDLLLKEPQNAEKEIHINKGNLNAVGNSLLFNSHILNGACCYKYEHVDSRCRSPLPIQKALASVCLITIDDGVWASGVLLNDQGLILTNAHLLEPWRFGKTTVSGWRNGVSFQP******************TLPPKMPKIVDSSVDEHRAYKLSSFSRGHRKIRVRLDHLDPWIWCDAKIVYVCKGPLDVSLLQLGYIPDQLCPIDADFGQPSLGSAAYVIGHGLFGPRCGLSPSVSSGVVAKVVKANLPSYGQSTLQRNSAYPVMLETTAAVHPGGSGGAVVNLDGHMIGLVTSNARHGGGTVIPHLNFSIPCAVLRPIFEFARDMQEVSLLRKLDEPNKHLASVWALMPPLSPKQGPSLPDLPQAALEDNIEGKGSRFAKFIAERREVLKHSTQVGNAERVSGEIFRSKL
*GLPEMAEFSRNFGVLVRVQGPDPKGLKMRRHAFHQYNSGKTTLSASGMLLPLSFFDTKVAERNWGVNGLIVTVASVVEPFLLPQYRDKDTSEGQPELITGSQIDFLVEGKLRSE********GSPEWVTAQLMMLVDIPVSSLALQSLMEASSGLPEHEWEVGWSLAPYNNSSQPLMGVVKTSIESNK***************SNLSLMSKSTSRVAILGVSSYLKDLPNIALTPLNKRGDLLLAVGSPFGVLSPMHFFNSVSMGSVANCYPPRSTTRSLLMADIRCLPGMEGGPVFGEHAHFVGILIRPLRQKSGAEIQLVIPWEAIATACSDLLLKEPQNAEKE********************ILNGACCYKYEHVDSRCRSPLPIQKALASVCLITIDDGVWASGVLLNDQGLILTNAHLLEPWRFGKTTVS*********P**S****HTGVDQ*QKSQTLPPKMPKIVDSSVDEHRAYKLSSFSRGHRKIRVRLDHLDPWIWCDAKIVYVCKGPLDVSLLQLGYIPDQLCPIDADFGQPSLGSAAYVIGHGLFGPRCGLSPSVSSGVVAKVVKANLP**********SAYPVMLETTAAVHPGGSGGAVVNLDGHMIGLVTSNARHGGGTVIPHLNFSIPCAVLRPIFEFARDMQEVSLLRKLDEPNKHLASVWALMPPLSPKQGPSLPDLPQAALEDNIEGKGSRFAKFIAERREVLKHSTQVGNAERVSGEIFRS**
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MGLPEMAEFSRNFGVLVRVQGPDPKGLKMRRHAFHQYNSGKTTLSASGMLLPLSFFDTKVAERNWGVNGLIVTVASVVEPFLLPQYRDKDTSEGQPELITGSQIDFLVEGKLRSEKEHEDVDKGSPEWVTAQLMMLVDIPVSSLALQSLMEASSGLPEHEWEVGWSLAPYNNSSQPLMGVVKTSIESNKISLMESHRPFAMEESSNLSLMSKSTSRVAILGVSSYLKDLPNIALTPLNKRGDLLLAVGSPFGVLSPMHFFNSVSMGSVANCYPPRSTTRSLLMADIRCLPGMEGGPVFGEHAHFVGILIRPLRQKSGAEIQLVIPWEAIATACSDLLLKEPQNAEKEIHINKGNLNAVGNSLLFNSHILNGACCYKYEHVDSRCRSPLPIQKALASVCLITIDDGVWASGVLLNDQGLILTNAHLLEPWRFGKTTVSGWRNGVSFQPEDSASSGHTGVDQYQKSQTLPPKMPKIVDSSVDEHRAYKLSSFSRGHRKIRVRLDHLDPWIWCDAKIVYVCKGPLDVSLLQLGYIPDQLCPIDADFGQPSLGSAAYVIGHGLFGPRCGLSPSVSSGVVAKVVKANLPSYGQSTLQRNSAYPVMLETTAAVHPGGSGGAVVNLDGHMIGLVTSNARHGGGTVIPHLNFSIPCAVLRPIFEFARDMQEVSLLRKLDEPNKHLASVWALMPPLSPKQGPSLPDLPQAALEDNIEGKGSRFAKFIAERREVLKHSTQVGNAERVSGEIFRSKL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query746 2.2.26 [Sep-21-2011]
Q8VZD4709 Glyoxysomal processing pr yes no 0.931 0.980 0.530 0.0
Q2T9J0566 Peroxisomal leader peptid yes no 0.218 0.287 0.367 2e-19
Q9DBA6568 Peroxisomal leader peptid yes no 0.167 0.220 0.394 3e-16
P45129 466 Probable periplasmic seri yes no 0.215 0.345 0.313 2e-07
P39099 455 Periplasmic pH-dependent N/A no 0.269 0.441 0.271 6e-06
P57322 478 Probable serine protease yes no 0.151 0.236 0.312 2e-05
P26982 475 Periplasmic serine endopr yes no 0.164 0.258 0.326 3e-05
P0C0V0 474 Periplasmic serine endopr N/A no 0.164 0.259 0.326 3e-05
P0C0V1 474 Periplasmic serine endopr N/A no 0.164 0.259 0.326 3e-05
F6AA62 479 Probable periplasmic seri yes no 0.174 0.271 0.296 0.0002
>sp|Q8VZD4|DEG15_ARATH Glyoxysomal processing protease, glyoxysomal OS=Arabidopsis thaliana GN=DEG15 PE=1 SV=2 Back     alignment and function desciption
 Score =  734 bits (1894), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 403/760 (53%), Positives = 517/760 (68%), Gaps = 65/760 (8%)

Query: 1   MGLPEMAEFSRNFGVLVRVQGPDPKGLKMRRHAFHQYNSGKTTLSASGMLLPLS-FFDTK 59
           M + ++  FSRNF VLV+V+GPDPKGLKMR+HAFHQY+SG  TLSASG+LLP   F   +
Sbjct: 1   MDVSKVVSFSRNFAVLVKVEGPDPKGLKMRKHAFHQYHSGNATLSASGILLPRDIFLSGE 60

Query: 60  VAERNWGVNG----LIVTVASVVEPFLLPQYRDKDTSEGQP-ELITGSQIDFLVEGKLRS 114
           VA +     G    L++TVASVVEPFL   +R   +    P +LI G+ I+ +VEG+L+S
Sbjct: 61  VAAKVLFEAGQDMALVLTVASVVEPFLTLGHRTSSSISQDPVKLIPGAMIEIMVEGQLKS 120

Query: 115 EKEHEDVDKGSPEWVTAQLMMLVDIPVSSLALQSLMEASSGLPEHEWEVGWSLAPYNNSS 174
           EKE       +P WV AQL+ LVD+PVSS ALQSL+EASSG  +  W++GWSL    N S
Sbjct: 121 EKE-------APFWVPAQLLSLVDVPVSSAALQSLIEASSGSKDSGWDIGWSLVSAANGS 173

Query: 175 QPLMGVVKTSIESNKISLMESHRPFAMEESSNLSLMSKSTSRVAILGVSSYLKDLPNIAL 234
           QP       +IE     LM+      ++E  N + M+KS +R+AILGV   L   P++  
Sbjct: 174 QP-----SINIEHYSKPLMQ------LDEPHNANFMAKSATRMAILGVPLSLLGQPSMNF 222

Query: 235 TPLNKRGDLLLAVGSPFGVLSPMHFFNSVSMGSVANCYPPRSTTRSLLMADIRCLPGMEG 294
              + +GD L+A+GSPFG+LSP++FFNSVS GS+AN YP  S  +SL++AD+RCLPGMEG
Sbjct: 223 ASSSSKGDTLVALGSPFGILSPVNFFNSVSTGSIANSYPSGSLKKSLMIADVRCLPGMEG 282

Query: 295 GPVFGEHAHFVGILIRPLRQK-SGAEIQLVIPWEAIATACSDLLLKEPQNAEKEIHINKG 353
            PVF ++ H +GILIRPLRQK SG EIQLV+PW AI TACS LLL+EP            
Sbjct: 283 APVFAKNGHLIGILIRPLRQKNSGVEIQLVVPWGAITTACSHLLLEEP------------ 330

Query: 354 NLNAVGNSLLFNSHILNGACCYKYEHVDSRCRSPLPIQKALASVCLITIDDGVWASGVLL 413
             +  G +  + S +L+          D+   + + I+KA+ SVCLIT++DGVWASG++L
Sbjct: 331 --SVEGKASQWGSEVLSVKS-------DASIPAQVAIEKAMESVCLITVNDGVWASGIIL 381

Query: 414 NDQGLILTNAHLLEPWRFGKTTVSGWRNGVSFQP-----EDSASSGHTGVDQYQKSQTLP 468
           N+ GLILTNAHLLEPWR+GK    G   G  F+P     E+ +S+G    +Q  KSQTLP
Sbjct: 382 NEHGLILTNAHLLEPWRYGK----GGVYGEGFKPYVLGAEEFSSTGSKFWEQ--KSQTLP 435

Query: 469 PKMPKIVDSSVDEH-RAYKLSSFSRGHRKIRVRLDHLDPWIWCDAKIVYVCKGPLDVSLL 527
            K P+   SSV E+ R YK +    GHR IRVRL HLD W WC A +VY+CK  LD++LL
Sbjct: 436 RKAPRNHYSSVGENIREYKHNFLQTGHRDIRVRLCHLDSWTWCPANVVYICKEQLDIALL 495

Query: 528 QLGYIPDQLCPIDADFGQPSLGSAAYVIGHGLFGPRCGLSPSVSSGVVAKVVKANLPSYG 587
           QL Y+P +L PI A+F  P LG+ A+V+GHGLFGPRCGLSPS+ SGVVAKVV A      
Sbjct: 496 QLEYVPGKLQPITANFSSPPLGTTAHVVGHGLFGPRCGLSPSICSGVVAKVVHAKRRLNT 555

Query: 588 QSTLQRNSAYPVMLETTAAVHPGGSGGAVVNLDGHMIGLVTSNARHGGGTVIPHLNFSIP 647
           QS  Q  + +P MLETTAAVHPGGSGGAV+N  GHMIGLVTSNARHG GTVIPHLNFSIP
Sbjct: 556 QSISQEVAEFPAMLETTAAVHPGGSGGAVLNSSGHMIGLVTSNARHGAGTVIPHLNFSIP 615

Query: 648 CAVLRPIFEFARDMQEVSLLRKLDEPNKHLASVWALMPPLSPKQGPSLPDLPQAALE-DN 706
           CAVL PIF+FA DMQ  ++L+ LD+P++ L+S+WALMP LSPK   SLP+LP+   + +N
Sbjct: 616 CAVLAPIFKFAEDMQNTTILQTLDQPSEELSSIWALMPSLSPKTEQSLPNLPKLLKDGNN 675

Query: 707 IEGKGSRFAKFIAERREVLKHSTQVGNAERVSGEIFRSKL 746
            + KGS+FAKFIAE +++    T      ++S ++  SKL
Sbjct: 676 KQTKGSQFAKFIAETQDMFVKPT------KLSRDVIPSKL 709
Trypsin-like serine endopeptidase involved in the processing of glyoxysomal higher molecular weight precursor. The dimeric form carries out the specific cleavages needed to remove PTS2-containing presequences, whereas the monomeric form degrades the removed presequences and misfolded proteins (Probable). Not required for degradation of glyoxylate cycle enzymes during seedling development.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 4EC: .EC: 2EC: 1EC: .EC: -
>sp|Q2T9J0|TYSD1_HUMAN Peroxisomal leader peptide-processing protease OS=Homo sapiens GN=TYSND1 PE=1 SV=3 Back     alignment and function description
>sp|Q9DBA6|TYSD1_MOUSE Peroxisomal leader peptide-processing protease OS=Mus musculus GN=Tysnd1 PE=1 SV=1 Back     alignment and function description
>sp|P45129|HTOA_HAEIN Probable periplasmic serine protease do/HhoA-like OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=HI_1259 PE=3 SV=1 Back     alignment and function description
>sp|P39099|DEGQ_ECOLI Periplasmic pH-dependent serine endoprotease DegQ OS=Escherichia coli (strain K12) GN=degQ PE=1 SV=1 Back     alignment and function description
>sp|P57322|DEGP_BUCAI Probable serine protease do-like OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS) GN=degP PE=3 SV=1 Back     alignment and function description
>sp|P26982|DEGP_SALTY Periplasmic serine endoprotease DegP OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=degP PE=3 SV=1 Back     alignment and function description
>sp|P0C0V0|DEGP_ECOLI Periplasmic serine endoprotease DegP OS=Escherichia coli (strain K12) GN=degP PE=1 SV=1 Back     alignment and function description
>sp|P0C0V1|DEGP_ECO57 Periplasmic serine endoprotease DegP OS=Escherichia coli O157:H7 GN=degP PE=3 SV=1 Back     alignment and function description
>sp|F6AA62|DEGPL_PSEF1 Probable periplasmic serine endoprotease DegP-like OS=Pseudomonas fulva (strain 12-X) GN=Psefu_3239 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query746
224077082752 predicted protein [Populus trichocarpa] 0.987 0.980 0.653 0.0
224125536716 predicted protein [Populus trichocarpa] 0.941 0.980 0.649 0.0
359483482753 PREDICTED: LOW QUALITY PROTEIN: glyoxyso 0.983 0.974 0.620 0.0
255536763729 trypsin domain-containing protein, putat 0.957 0.979 0.605 0.0
297740411682 unnamed protein product [Vitis vinifera] 0.896 0.980 0.587 0.0
356546634749 PREDICTED: glyoxysomal processing protea 0.970 0.966 0.562 0.0
111183165753 putative protease/hydrolase [Solanum lyc 0.989 0.980 0.538 0.0
147774460840 hypothetical protein VITISV_001901 [Viti 0.902 0.801 0.551 0.0
357446685819 Peroxisomal leader peptide-processing pr 0.981 0.893 0.520 0.0
297851284713 hypothetical protein ARALYDRAFT_473044 [ 0.936 0.980 0.525 0.0
>gi|224077082|ref|XP_002305124.1| predicted protein [Populus trichocarpa] gi|222848088|gb|EEE85635.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  928 bits (2398), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 497/761 (65%), Positives = 594/761 (78%), Gaps = 24/761 (3%)

Query: 1   MGLPEMAEFSRNFGVLVRVQGPDPKGLKMRRHAFHQYNSGKTTLSASGMLLPLSFFDTKV 60
           MGLPE+ +F+RNF V+VR+QGPDPKGLKMR+HAFHQYNSGKTTLSASG+LLP + +D  +
Sbjct: 1   MGLPEIVDFARNFAVMVRIQGPDPKGLKMRKHAFHQYNSGKTTLSASGLLLPDTLYDADL 60

Query: 61  AER-----NWGVNGLIVTVASVVEPFLLPQYRDKDTSEGQPELITGSQIDFLVEGK--LR 113
           A R     + G+ GL+VTVASV+EPFL  ++R+   S+ +PELI G+QID + EGK  LR
Sbjct: 61  ANRILEGKSQGL-GLVVTVASVIEPFLSSKHRES-ISQSRPELIPGAQIDVMAEGKSDLR 118

Query: 114 SEKEHEDVDKGSPEWVTAQLMMLVDIPVSSLALQSLMEASSGLPEHEWEVGWSLAPYNNS 173
           +  +   +DKG+  W+ AQ++ LVD+P+SSLALQSL+EASSG   H WEVGWSLA   N 
Sbjct: 119 NGADG-GLDKGTSHWLRAQVIRLVDVPLSSLALQSLVEASSGSMNHGWEVGWSLASPENG 177

Query: 174 SQPLMGVVKTSIESNKISLMESHRPFAMEESSNLSLMSKSTSRVAILGVSSYLKDLPNIA 233
           SQ  M VV+T  E    S+ ES R  A EESSN S+M KST+RVAILGV  +LKDLPN  
Sbjct: 178 SQSFMDVVQTQTEHGNASIAESQR-RAREESSNPSIMGKSTTRVAILGVFLHLKDLPNFE 236

Query: 234 LTPLNKRGDLLLAVGSPFGVLSPMHFFNSVSMGSVANCYPPRSTTRSLLMADIRCLPGME 293
           ++  ++RGD LLAVGSPFGVLSP+HFFNS+S+GS+ANCYPPRS+  SLLMADIRCLPGME
Sbjct: 237 ISASSRRGDFLLAVGSPFGVLSPVHFFNSLSVGSIANCYPPRSSDISLLMADIRCLPGME 296

Query: 294 GGPVFGEHAHFVGILIRPLRQKS-GAEIQLVIPWEAIATACSDLLLKEPQNAEKEIHINK 352
           G PVF E+++F+GILIRPLRQKS GAEIQLVIPWEAIA ACSDLLLKEPQNAEK IHINK
Sbjct: 297 GSPVFCENSNFIGILIRPLRQKSSGAEIQLVIPWEAIALACSDLLLKEPQNAEKGIHINK 356

Query: 353 GNLNAVGNSLLFNSHILNGACCYKYEHVDSRCRSPLPIQKALASVCLITIDDGVWASGVL 412
            NLNAVGN+   +S   +G    K+EH  S C SP P++KA+AS+CLITID+ VWASGVL
Sbjct: 357 ENLNAVGNAYSSSS---DGPFPLKHEHHISYCSSPPPVEKAMASICLITIDELVWASGVL 413

Query: 413 LNDQGLILTNAHLLEPWRFGKTTVSGWRNGVSFQ-----PEDSASSGHTGVDQYQKSQTL 467
           LNDQGLILTNAHLLEPWRFGKTTV+G  +G   Q     PE+     ++ VD ++K+Q L
Sbjct: 414 LNDQGLILTNAHLLEPWRFGKTTVNGGEDGTKLQDPFIPPEEFPR--YSEVDGHEKTQRL 471

Query: 468 PPKMPKIVDSSV-DEHRAYKLSSFSRGHRKIRVRLDHLDPWIWCDAKIVYVCKGPLDVSL 526
           PPK   I++SSV DE + YKLS   +G   IRVRLDH DPWIWCDAK+V+VCKGPLDV+L
Sbjct: 472 PPKTLNIMNSSVADESKGYKLSLSYKGPMNIRVRLDHADPWIWCDAKVVHVCKGPLDVAL 531

Query: 527 LQLGYIPDQLCPIDADFGQPSLGSAAYVIGHGLFGPRCGLSPSVSSGVVAKVVKANLPSY 586
           LQL ++PDQL P   DF   SLGS AYVIGHGLFGPRCG SPS+ SG V+KVVKA  PSY
Sbjct: 532 LQLEHVPDQLFPTKVDFECSSLGSKAYVIGHGLFGPRCGFSPSICSGAVSKVVKAKAPSY 591

Query: 587 GQSTLQRNSAYPVMLETTAAVHPGGSGGAVVNLDGHMIGLVTSNARHGGGTVIPHLNFSI 646
            QS     S  P MLETTAAVHPGGSGGAVVN +GHMIGLVTS ARHGGGTVIPHLNFSI
Sbjct: 592 CQSVQGGYSHIPAMLETTAAVHPGGSGGAVVNSEGHMIGLVTSKARHGGGTVIPHLNFSI 651

Query: 647 PCAVLRPIFEFARDMQEVSLLRKLDEPNKHLASVWALMPPLSPKQGPSLPDLPQAALED- 705
           PCAVL PIF+FA+DM+++SLL+ LD PN+HL+SVWALMPPLSPK  P LP LP++ L+D 
Sbjct: 652 PCAVLAPIFDFAKDMRDISLLQNLDRPNEHLSSVWALMPPLSPKPSPPLPSLPESILQDY 711

Query: 706 NIEGKGSRFAKFIAERREVLKHSTQVGNAERVSGEIFRSKL 746
             + KGSRFAKFIAER ++ + + Q+G A+ +S  I  SKL
Sbjct: 712 EKQVKGSRFAKFIAEREKLFRGTPQLGKAKSISSVIIPSKL 752

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224125536|ref|XP_002329829.1| predicted protein [Populus trichocarpa] gi|222870891|gb|EEF08022.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359483482|ref|XP_002273997.2| PREDICTED: LOW QUALITY PROTEIN: glyoxysomal processing protease, glyoxysomal-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|255536763|ref|XP_002509448.1| trypsin domain-containing protein, putative [Ricinus communis] gi|223549347|gb|EEF50835.1| trypsin domain-containing protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|297740411|emb|CBI30593.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356546634|ref|XP_003541729.1| PREDICTED: glyoxysomal processing protease, glyoxysomal-like [Glycine max] Back     alignment and taxonomy information
>gi|111183165|gb|ABH07902.1| putative protease/hydrolase [Solanum lycopersicum] Back     alignment and taxonomy information
>gi|147774460|emb|CAN59793.1| hypothetical protein VITISV_001901 [Vitis vinifera] Back     alignment and taxonomy information
>gi|357446685|ref|XP_003593618.1| Peroxisomal leader peptide-processing protease [Medicago truncatula] gi|355482666|gb|AES63869.1| Peroxisomal leader peptide-processing protease [Medicago truncatula] Back     alignment and taxonomy information
>gi|297851284|ref|XP_002893523.1| hypothetical protein ARALYDRAFT_473044 [Arabidopsis lyrata subsp. lyrata] gi|297339365|gb|EFH69782.1| hypothetical protein ARALYDRAFT_473044 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query746
TAIR|locus:2032142709 DEG15 "degradation of periplas 0.462 0.486 0.555 5.3e-173
DICTYBASE|DDB_G0279049849 DDB_G0279049 "trypsin-like ser 0.120 0.106 0.414 3.8e-28
UNIPROTKB|Q2T9J0566 TYSND1 "Peroxisomal leader pep 0.217 0.286 0.333 3.7e-25
ZFIN|ZDB-GENE-030131-8525565 tysnd1 "trypsin domain contain 0.176 0.233 0.318 7.1e-23
UNIPROTKB|F1SUE6568 TYSND1 "Uncharacterized protei 0.213 0.279 0.313 3e-22
MGI|MGI:1919017568 Tysnd1 "trypsin domain contain 0.215 0.283 0.326 5.8e-22
RGD|1307354567 Tysnd1 "trypsin domain contain 0.215 0.283 0.308 1.8e-21
UNIPROTKB|J9P6K2198 TYSND1 "Uncharacterized protei 0.217 0.818 0.327 1.7e-14
UNIPROTKB|E1BF31565 E1BF31 "Uncharacterized protei 0.119 0.157 0.383 5.6e-13
UNIPROTKB|E2R4X7418 TYSND1 "Uncharacterized protei 0.217 0.387 0.327 2.6e-12
TAIR|locus:2032142 DEG15 "degradation of periplasmic proteins 15" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 978 (349.3 bits), Expect = 5.3e-173, Sum P(2) = 5.3e-173
 Identities = 199/358 (55%), Positives = 251/358 (70%)

Query:   381 DSRCRSPLPIQKALASVCLITIDDGVWASGVLLNDQGLILTNAHLLEPWRFGKTTVSGWR 440
             D+   + + I+KA+ SVCLIT++DGVWASG++LN+ GLILTNAHLLEPWR+GK  V G  
Sbjct:   349 DASIPAQVAIEKAMESVCLITVNDGVWASGIILNEHGLILTNAHLLEPWRYGKGGVYG-- 406

Query:   441 NGVSFQP-----EDSASSGHTGVDQYQKSQTLPPKMPKIVDSSVDEH-RAYKLSSFSRGH 494
              G  F+P     E+ +S+G    +Q  KSQTLP K P+   SSV E+ R YK +    GH
Sbjct:   407 EG--FKPYVLGAEEFSSTGSKFWEQ--KSQTLPRKAPRNHYSSVGENIREYKHNFLQTGH 462

Query:   495 RKIRVRLDHLDPWIWCDAKIVYVCKGPLDVSLLQLGYIPDQLCPIDADFGQPSLGSAAYV 554
             R IRVRL HLD W WC A +VY+CK  LD++LLQL Y+P +L PI A+F  P LG+ A+V
Sbjct:   463 RDIRVRLCHLDSWTWCPANVVYICKEQLDIALLQLEYVPGKLQPITANFSSPPLGTTAHV 522

Query:   555 IGHGLFGPRCGLXXXXXXXXXXXXXXXNLPSYGQSTLQRNSAYPVMLETTAAVHPGGSGG 614
             +GHGLFGPRCGL                     QS  Q  + +P MLETTAAVHPGGSGG
Sbjct:   523 VGHGLFGPRCGLSPSICSGVVAKVVHAKRRLNTQSISQEVAEFPAMLETTAAVHPGGSGG 582

Query:   615 AVVNLDGHMIGLVTSNARHGGGTVIPHLNFSIPCAVLRPIFEFARDMQEVSLLRKLDEPN 674
             AV+N  GHMIGLVTSNARHG GTVIPHLNFSIPCAVL PIF+FA DMQ  ++L+ LD+P+
Sbjct:   583 AVLNSSGHMIGLVTSNARHGAGTVIPHLNFSIPCAVLAPIFKFAEDMQNTTILQTLDQPS 642

Query:   675 KHLASVWALMPPLSPKQGPSLPDLPQAALE-DNIEGKGSRFAKFIAERREVLKHSTQV 731
             + L+S+WALMP LSPK   SLP+LP+   + +N + KGS+FAKFIAE +++    T++
Sbjct:   643 EELSSIWALMPSLSPKTEQSLPNLPKLLKDGNNKQTKGSQFAKFIAETQDMFVKPTKL 700
GO:0003824 "catalytic activity" evidence=IEA
GO:0004175 "endopeptidase activity" evidence=IMP
GO:0005777 "peroxisome" evidence=IDA
DICTYBASE|DDB_G0279049 DDB_G0279049 "trypsin-like serine protease family protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|Q2T9J0 TYSND1 "Peroxisomal leader peptide-processing protease" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-8525 tysnd1 "trypsin domain containing 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1SUE6 TYSND1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:1919017 Tysnd1 "trypsin domain containing 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1307354 Tysnd1 "trypsin domain containing 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|J9P6K2 TYSND1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|E1BF31 E1BF31 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2R4X7 TYSND1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8VZD4DEG15_ARATH3, ., 4, ., 2, 1, ., -0.53020.93160.9802yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.4.210.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00040486
hypothetical protein (752 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query746
pfam13365138 pfam13365, Trypsin_2, Trypsin-like peptidase domai 6e-08
PRK10942 473 PRK10942, PRK10942, serine endoprotease; Provision 7e-07
PRK10139 455 PRK10139, PRK10139, serine endoprotease; Provision 2e-05
COG0265347 COG0265, DegQ, Trypsin-like serine proteases, typi 2e-05
TIGR02037 428 TIGR02037, degP_htrA_DO, periplasmic serine protea 3e-05
TIGR02038351 TIGR02038, protease_degS, periplasmic serine pepet 2e-04
pfam13365138 pfam13365, Trypsin_2, Trypsin-like peptidase domai 0.003
>gnl|CDD|222077 pfam13365, Trypsin_2, Trypsin-like peptidase domain Back     alignment and domain information 
 Score = 51.8 bits (124), Expect = 6e-08
 Identities = 29/117 (24%), Positives = 44/117 (37%), Gaps = 15/117 (12%)

Query: 510 CDAKIVYVCKGPLDVSLLQLGYIPDQLCPIDADFGQPSLGSAAYVIGHGLFGPRCGLSPS 569
             A++V      LD++LL++        P+ A    P  GS   V G G  G        
Sbjct: 37  VPAEVVAADPD-LDLALLKVDGPLLPAAPLLASSAAPLGGSVVVVGGPGGIGLGASGGGG 95

Query: 570 VSSGVVAKVVKANLPSYGQSTLQRNSAYPVMLETTAAVHPGGSGGAVVNLDGHMIGL 626
              G+V+  +      Y              + T A   PG SGG V + DG ++G+
Sbjct: 96  GVGGLVSGSLGGVDGRY--------------ILTDADTSPGSSGGPVFDADGEVVGI 138

This family includes trypsin like peptidase domains. Length = 138
>gnl|CDD|236802 PRK10942, PRK10942, serine endoprotease; Provisional Back     alignment and domain information
>gnl|CDD|182262 PRK10139, PRK10139, serine endoprotease; Provisional Back     alignment and domain information
>gnl|CDD|223343 COG0265, DegQ, Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|233695 TIGR02037, degP_htrA_DO, periplasmic serine protease, Do/DeqQ family Back     alignment and domain information
>gnl|CDD|233696 TIGR02038, protease_degS, periplasmic serine pepetdase DegS Back     alignment and domain information
>gnl|CDD|222077 pfam13365, Trypsin_2, Trypsin-like peptidase domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 746
PRK10139 455 serine endoprotease; Provisional 99.97
TIGR02038351 protease_degS periplasmic serine pepetdase DegS. T 99.97
PRK10898353 serine endoprotease; Provisional 99.96
PRK10942473 serine endoprotease; Provisional 99.96
TIGR02037 428 degP_htrA_DO periplasmic serine protease, Do/DeqQ 99.95
COG0265347 DegQ Trypsin-like serine proteases, typically peri 99.88
PRK10139455 serine endoprotease; Provisional 99.84
PRK10942473 serine endoprotease; Provisional 99.8
TIGR02038351 protease_degS periplasmic serine pepetdase DegS. T 99.78
PRK10898353 serine endoprotease; Provisional 99.77
TIGR02037428 degP_htrA_DO periplasmic serine protease, Do/DeqQ 99.74
COG0265347 DegQ Trypsin-like serine proteases, typically peri 99.7
PF13365120 Trypsin_2: Trypsin-like peptidase domain; PDB: 1Y8 99.54
KOG1320473 consensus Serine protease [Posttranslational modif 99.47
PF00089220 Trypsin: Trypsin; InterPro: IPR001254 In the MEROP 99.31
cd00190232 Tryp_SPc Trypsin-like serine protease; Many of the 99.2
KOG1320473 consensus Serine protease [Posttranslational modif 99.17
KOG1421 955 consensus Predicted signaling-associated protein ( 99.11
smart00020229 Tryp_SPc Trypsin-like serine protease. Many of the 99.0
COG3591251 V8-like Glu-specific endopeptidase [Amino acid tra 98.47
KOG3627256 consensus Trypsin [Amino acid transport and metabo 98.14
PF00863235 Peptidase_C4: Peptidase family C4 This family belo 97.71
PF13365120 Trypsin_2: Trypsin-like peptidase domain; PDB: 1Y8 97.66
COG5640413 Secreted trypsin-like serine protease [Posttransla 97.14
PF03761282 DUF316: Domain of unknown function (DUF316) ; Inte 97.11
PF05579297 Peptidase_S32: Equine arteritis virus serine endop 96.88
PF00089220 Trypsin: Trypsin; InterPro: IPR001254 In the MEROP 96.2
PF10459698 Peptidase_S46: Peptidase S46; InterPro: IPR019500 94.44
PF00548172 Peptidase_C3: 3C cysteine protease (picornain 3C); 93.89
COG3591251 V8-like Glu-specific endopeptidase [Amino acid tra 93.42
KOG1421 955 consensus Predicted signaling-associated protein ( 91.5
PF08192695 Peptidase_S64: Peptidase family S64; InterPro: IPR 90.99
PF02907148 Peptidase_S29: Hepatitis C virus NS3 protease; Int 89.45
PF00949132 Peptidase_S7: Peptidase S7, Flavivirus NS3 serine 88.85
PF10459698 Peptidase_S46: Peptidase S46; InterPro: IPR019500 88.0
PF00949132 Peptidase_S7: Peptidase S7, Flavivirus NS3 serine 87.39
PF02907148 Peptidase_S29: Hepatitis C virus NS3 protease; Int 86.21
PF00944158 Peptidase_S3: Alphavirus core protein ; InterPro: 85.86
PF00863235 Peptidase_C4: Peptidase family C4 This family belo 82.71
smart00020229 Tryp_SPc Trypsin-like serine protease. Many of the 80.87
PF05580218 Peptidase_S55: SpoIVB peptidase S55; InterPro: IPR 80.78
cd00190232 Tryp_SPc Trypsin-like serine protease; Many of the 80.6
>PRK10139 serine endoprotease; Provisional Back     alignment and domain information 
Probab=99.97  E-value=3.5e-30  Score=290.35  Aligned_cols=252  Identities=25%  Similarity=0.432  Sum_probs=197.5

Q ss_pred             ChhHHHhccCceEEEEeC------------------C----------CeeEEEEEEeC-CCEEEEcccccCCCCCcceee
Q 004542          386 SPLPIQKALASVCLITID------------------D----------GVWASGVLLND-QGLILTNAHLLEPWRFGKTTV  436 (746)
Q Consensus       386 ~p~~i~ka~~SVV~I~~~------------------~----------~~wGSGflIn~-~GlILTnaHVV~p~~~~~t~~  436 (746)
                      ...+++++.||||.|...                  .          .++||||+|++ +||||||+|||+         
T Consensus        42 ~~~~~~~~~pavV~i~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~GSG~ii~~~~g~IlTn~HVv~---------  112 (455)
T PRK10139         42 LAPMLEKVLPAVVSVRVEGTASQGQKIPEEFKKFFGDDLPDQPAQPFEGLGSGVIIDAAKGYVLTNNHVIN---------  112 (455)
T ss_pred             HHHHHHHhCCcEEEEEEEEeecccccCchhHHHhccccCCccccccccceEEEEEEECCCCEEEeChHHhC---------
Confidence            456899999999999541                  0          24799999985 799999999997         


Q ss_pred             cCCccccccCCCCCCCCCCCCccccccccCCCCCCCcccccccccccccccccccCCceeEEEEEcCCCCceeEeeEEEe
Q 004542          437 SGWRNGVSFQPEDSASSGHTGVDQYQKSQTLPPKMPKIVDSSVDEHRAYKLSSFSRGHRKIRVRLDHLDPWIWCDAKIVY  516 (746)
Q Consensus       437 ~G~~~~~~f~~~~~~~~~~~~v~~~~k~q~l~~k~~~i~~~~~~~~~~~~l~l~~~~~~~I~Vrl~~~~~~~W~~A~VV~  516 (746)
                       +                                                       ...|.|++.+++.   |+|++++
T Consensus       113 -~-------------------------------------------------------a~~i~V~~~dg~~---~~a~vvg  133 (455)
T PRK10139        113 -Q-------------------------------------------------------AQKISIQLNDGRE---FDAKLIG  133 (455)
T ss_pred             -C-------------------------------------------------------CCEEEEEECCCCE---EEEEEEE
Confidence             1                                                       2238888888876   9999999


Q ss_pred             ecCCCCceEEEEEccCCCCcceeecCCC-CCCCCCeEEEEecCCCCCCCCCCCeeeeeEEeeeeeccCCCCCccccccCC
Q 004542          517 VCKGPLDVSLLQLGYIPDQLCPIDADFG-QPSLGSAAYVIGHGLFGPRCGLSPSVSSGVVAKVVKANLPSYGQSTLQRNS  595 (746)
Q Consensus       517 v~d~~~DLALLkle~~p~~l~pi~L~~s-~~~~G~~V~vIG~plf~~~~gl~psvt~GiVS~v~~~~~~~~~~~~~~~~~  595 (746)
                       .|+.+||||||++. +..+++++++++ .+++||+|+++|||     +|+..+++.|+||+..+...         ...
T Consensus       134 -~D~~~DlAvlkv~~-~~~l~~~~lg~s~~~~~G~~V~aiG~P-----~g~~~tvt~GivS~~~r~~~---------~~~  197 (455)
T PRK10139        134 -SDDQSDIALLQIQN-PSKLTQIAIADSDKLRVGDFAVAVGNP-----FGLGQTATSGIISALGRSGL---------NLE  197 (455)
T ss_pred             -EcCCCCEEEEEecC-CCCCceeEecCccccCCCCEEEEEecC-----CCCCCceEEEEEcccccccc---------CCC
Confidence             78899999999985 357889999876 68999999999994     67778999999998865310         012


Q ss_pred             CcCcEEEEcccccCCCCCCccccCCcEEEEEEeeeccCCCCcccCceEEEEehhHHHHHHHHHHhccccc-----h-hcc
Q 004542          596 AYPVMLETTAAVHPGGSGGAVVNLDGHMIGLVTSNARHGGGTVIPHLNFSIPCAVLRPIFEFARDMQEVS-----L-LRK  669 (746)
Q Consensus       596 ~~~~~IqTdAav~~GnSGGPL~n~~G~VIGIvssna~~~~g~~~p~lnFaIPi~~l~~il~~~~~~~d~~-----~-l~~  669 (746)
                      .+..+|||||++++|||||||||.+|+||||+++.....++.  .+++|+||++.++++++++.+.+.+.     + ++.
T Consensus       198 ~~~~~iqtda~in~GnSGGpl~n~~G~vIGi~~~~~~~~~~~--~gigfaIP~~~~~~v~~~l~~~g~v~r~~LGv~~~~  275 (455)
T PRK10139        198 GLENFIQTDASINRGNSGGALLNLNGELIGINTAILAPGGGS--VGIGFAIPSNMARTLAQQLIDFGEIKRGLLGIKGTE  275 (455)
T ss_pred             CcceEEEECCccCCCCCcceEECCCCeEEEEEEEEEcCCCCc--cceEEEEEhHHHHHHHHHHhhcCcccccceeEEEEE
Confidence            345689999999999999999999999999999987765443  38999999999999999998866652     1 223


Q ss_pred             CCCCCccceeeeeecCCCCCCCCCCCCCCCc---cccc-cc-ccCCcchhHHHHHHHHHHHh
Q 004542          670 LDEPNKHLASVWALMPPLSPKQGPSLPDLPQ---AALE-DN-IEGKGSRFAKFIAERREVLK  726 (746)
Q Consensus       670 L~~~~~~l~~vW~L~~~~~~~~~~~~~~~p~---~~~~-~~-~~~~~~~~ak~~~~~~~~~~  726 (746)
                      +   ++..+..+.|............|+.|+   ++++ |. .+.+|.++..+-+.++.+.+
T Consensus       276 l---~~~~~~~lgl~~~~Gv~V~~V~~~SpA~~AGL~~GDvIl~InG~~V~s~~dl~~~l~~  334 (455)
T PRK10139        276 M---SADIAKAFNLDVQRGAFVSEVLPNSGSAKAGVKAGDIITSLNGKPLNSFAELRSRIAT  334 (455)
T ss_pred             C---CHHHHHhcCCCCCCceEEEEECCCChHHHCCCCCCCEEEEECCEECCCHHHHHHHHHh
Confidence            2   344444455543334455666677775   6777 77 99999999998888777765

>TIGR02038 protease_degS periplasmic serine pepetdase DegS Back     alignment and domain information
>PRK10898 serine endoprotease; Provisional Back     alignment and domain information
>PRK10942 serine endoprotease; Provisional Back     alignment and domain information
>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family Back     alignment and domain information
>COG0265 DegQ Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK10139 serine endoprotease; Provisional Back     alignment and domain information
>PRK10942 serine endoprotease; Provisional Back     alignment and domain information
>TIGR02038 protease_degS periplasmic serine pepetdase DegS Back     alignment and domain information
>PRK10898 serine endoprotease; Provisional Back     alignment and domain information
>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family Back     alignment and domain information
>COG0265 DegQ Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13365 Trypsin_2: Trypsin-like peptidase domain; PDB: 1Y8T_A 2Z9I_A 3QO6_A 1L1J_A 1QY6_A 2O8L_A 3OTP_E 2ZLE_I 1KY9_A 3CS0_A Back     alignment and domain information
>KOG1320 consensus Serine protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF00089 Trypsin: Trypsin; InterPro: IPR001254 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>cd00190 Tryp_SPc Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms Back     alignment and domain information
>KOG1320 consensus Serine protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1421 consensus Predicted signaling-associated protein (contains a PDZ domain) [General function prediction only] Back     alignment and domain information
>smart00020 Tryp_SPc Trypsin-like serine protease Back     alignment and domain information
>COG3591 V8-like Glu-specific endopeptidase [Amino acid transport and metabolism] Back     alignment and domain information
>KOG3627 consensus Trypsin [Amino acid transport and metabolism] Back     alignment and domain information
>PF00863 Peptidase_C4: Peptidase family C4 This family belongs to family C4 of the peptidase classification Back     alignment and domain information
>PF13365 Trypsin_2: Trypsin-like peptidase domain; PDB: 1Y8T_A 2Z9I_A 3QO6_A 1L1J_A 1QY6_A 2O8L_A 3OTP_E 2ZLE_I 1KY9_A 3CS0_A Back     alignment and domain information
>COG5640 Secreted trypsin-like serine protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF03761 DUF316: Domain of unknown function (DUF316) ; InterPro: IPR005514 This is a family of uncharacterised proteins from Caenorhabditis elegans Back     alignment and domain information
>PF05579 Peptidase_S32: Equine arteritis virus serine endopeptidase S32; InterPro: IPR008760 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PF00089 Trypsin: Trypsin; InterPro: IPR001254 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PF10459 Peptidase_S46: Peptidase S46; InterPro: IPR019500 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PF00548 Peptidase_C3: 3C cysteine protease (picornain 3C); InterPro: IPR000199 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>COG3591 V8-like Glu-specific endopeptidase [Amino acid transport and metabolism] Back     alignment and domain information
>KOG1421 consensus Predicted signaling-associated protein (contains a PDZ domain) [General function prediction only] Back     alignment and domain information
>PF08192 Peptidase_S64: Peptidase family S64; InterPro: IPR012985 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PF02907 Peptidase_S29: Hepatitis C virus NS3 protease; InterPro: IPR004109 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PF00949 Peptidase_S7: Peptidase S7, Flavivirus NS3 serine protease ; InterPro: IPR001850 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PF10459 Peptidase_S46: Peptidase S46; InterPro: IPR019500 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PF00949 Peptidase_S7: Peptidase S7, Flavivirus NS3 serine protease ; InterPro: IPR001850 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PF02907 Peptidase_S29: Hepatitis C virus NS3 protease; InterPro: IPR004109 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PF00944 Peptidase_S3: Alphavirus core protein ; InterPro: IPR000930 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PF00863 Peptidase_C4: Peptidase family C4 This family belongs to family C4 of the peptidase classification Back     alignment and domain information
>smart00020 Tryp_SPc Trypsin-like serine protease Back     alignment and domain information
>PF05580 Peptidase_S55: SpoIVB peptidase S55; InterPro: IPR008763 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>cd00190 Tryp_SPc Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query746
3stj_A345 Crystal Structure Of The Protease + Pdz1 Domain Of 2e-04
4a8a_A 436 Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 1 4e-04
3sti_A245 Crystal Structure Of The Protease Domain Of Degq Fr 6e-04
2zle_A 448 Cryo-Em Structure Of Degp12OMP Length = 448 9e-04
3mh5_A 456 Htra Proteases Are Activated By A Conserved Mechani 9e-04
>pdb|3STJ|A Chain A, Crystal Structure Of The Protease + Pdz1 Domain Of Degq From Escherichia Coli Length = 345 Back     alignment and structure 
Iteration: 1

 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Query: 600 MLETTAAVHPGGSGGAVVNLDGHMIGLVTSNARHGGGTVIPHLNFSIPCAVLRPIFEFAR 659
            ++T A+++ G SGGA++NL+G +IG+ T+    GGG+V   + F+IP  + R + +   
Sbjct: 175 FIQTDASINRGNSGGALLNLNGELIGINTAILAPGGGSV--GIGFAIPSNMARTLAQQLI 232
Query: 660 DMQEV 664
           D  E+
Sbjct: 233 DFGEI 237
>pdb|4A8A|A Chain A, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer In Complex With Lysozyme Length = 436 Back     alignment and structure
>pdb|3STI|A Chain A, Crystal Structure Of The Protease Domain Of Degq From Escherichia Coli Length = 245 Back     alignment and structure
>pdb|2ZLE|A Chain A, Cryo-Em Structure Of Degp12OMP Length = 448 Back     alignment and structure
>pdb|3MH5|A Chain A, Htra Proteases Are Activated By A Conserved Mechanism That Can Be Triggered By Distinct Molecular Cues Length = 456 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query746
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-05
2vid_A204 Serine protease SPLB; hydrolase; 1.80A {Staphyloco 1e-08
3k6y_A237 Serine protease, possible membrane-associated seri 4e-08
2as9_A210 Serine protease; trypsin-like fold, hydrolase; 1.7 2e-07
3lgi_A237 Protease DEGS; stress-sensor, HTRA, PDZ OMP, hydro 1e-06
1y8t_A324 Hypothetical protein RV0983; serine protease, stru 1e-06
2w7s_A200 Serine protease SPLA; hydrolase, family S1; 1.80A 3e-06
3sti_A245 Protease DEGQ; serine protease, PDZ domain, chaper 3e-06
3stj_A345 Protease DEGQ; serine protease, PDZ domain, protea 6e-06
2w5e_A163 Putative serine protease; coiled coil, transmembra 7e-06
1te0_A318 Protease DEGS; two domains, serine protease, PDZ, 7e-06
1l1j_A239 Heat shock protease HTRA; hydrolase, serine protei 8e-06
4a8c_A 436 Periplasmic PH-dependent serine endoprotease DEGQ; 1e-05
1ky9_A 448 Protease DO, DEGP, HTRA; protein quality control, 2e-05
1agj_A242 Epidermolytic toxin A; hydrolase, serine protease; 2e-05
1qtf_A246 Exfoliative toxin B; serine protease, superantigen 2e-05
3num_A332 Serine protease HTRA1; DEGP, hydrolase; 2.75A {Hom 4e-05
3qo6_A348 Protease DO-like 1, chloroplastic; protease, HTRA, 6e-05
1p3c_A215 Glutamyl-endopeptidase; serine protease, hydrolase 7e-05
3pv2_A 451 DEGQ; trypsin fold, PDZ domain, chaperone protease 1e-04
3tjo_A231 Serine protease HTRA1; peptidase, hydrolase; HET: 1e-04
1lcy_A325 HTRA2 serine protease; apoptosis, PDZ domain, casp 2e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 68.3 bits (166), Expect = 6e-12
 Identities = 81/609 (13%), Positives = 184/609 (30%), Gaps = 160/609 (26%)

Query: 57  DTKVAERNWGVNGLIVTVASVVEPFLLPQYRDKDTSEGQPELITGSQIDFLVEGK----- 111
           D +  E  +    ++    SV E   +  +  KD  +    +++  +ID ++  K     
Sbjct: 8   DFETGEHQYQYKDIL----SVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSG 63

Query: 112 -------LRSEKEH------EDVDKGSPEWVTAQLMMLVDIPVSSLALQSLMEASSGLPE 158
                  L S++E       E+V + + +++ + +      P  S+  +  +E    L  
Sbjct: 64  TLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQP--SMMTRMYIEQRDRL-- 119

Query: 159 HEWEVGWSLAPYNNSSQPLMGVVKTSIE---------------SNKISLMESHRPFAMEE 203
             +      A YN S       ++ ++                S K  +       A++ 
Sbjct: 120 --YNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWV-------ALDV 170

Query: 204 SSNLSLMSKSTSRVAILGVSSYLKDLPNIALTPLNKRGDLLLAVGSPFGVL-----SPMH 258
             +  +  K   ++  L + +     P   L  L K   LL  +   +        +   
Sbjct: 171 CLSYKVQCKMDFKIFWLNLKNCNS--PETVLEMLQK---LLYQIDPNWTSRSDHSSNIKL 225

Query: 259 FFNSVSMGSVANCYPPRSTTRSLLMAD------------IRC--------------LPGM 292
             +S+    +      +     LL+              + C              L   
Sbjct: 226 RIHSIQ-AELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAA 284

Query: 293 EGGPVFGEH--------------AHFVGILIRPLRQKSGAEIQLVIPWEAIATACSDLLL 338
               +  +H                ++    + L +    E+    P   ++   ++ + 
Sbjct: 285 TTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR----EVLTTNPR-RLSI-IAESIR 338

Query: 339 KEPQNAEKEIHINKGNLN-AVGNSL-LFNSHILNGACCYKY-----EHVDSRCRSPLPIQ 391
                 +   H+N   L   + +SL +           +                 +P  
Sbjct: 339 DGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRK--MFDRLSVFPPSA------HIPTI 390

Query: 392 KALASVCLITIDDGVWASGVLLNDQGLILTNAH---LLEPWRFGKTTVSGWRNGVSF--- 445
                  L+++   +W   +  +D  +++   H   L+E     ++T+S     +     
Sbjct: 391 -------LLSL---IWFDVIK-SDVMVVVNKLHKYSLVEKQPK-ESTIS--IPSIYLELK 436

Query: 446 QPEDSASSGH-TGVDQYQKSQTLPP--KMPKIVDSSVDEHRAYKLSSFSRGHRKIRVRLD 502
              ++  + H + VD Y   +T      +P  +D     H  + L +     R    R+ 
Sbjct: 437 VKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMV 496

Query: 503 HLD-PWIWCDAKIVYV-----CKGPLDVSLLQLGYIPDQLCPIDADFGQPSLGSAAYVIG 556
            LD  ++  + KI +        G +  +L QL +    +C  D  + +        V  
Sbjct: 497 FLDFRFL--EQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYER-------LVNA 547

Query: 557 HGLFGPRCG 565
              F P+  
Sbjct: 548 ILDFLPKIE 556
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2vid_A Serine protease SPLB; hydrolase; 1.80A {Staphylococcus aureus} Length = 204 Back     alignment and structure
>3k6y_A Serine protease, possible membrane-associated serine protease; oxidative stress, disulfide, BENT helix, HY protease; 1.30A {Mycobacterium tuberculosis} PDB: 3k6z_A 3lt3_A Length = 237 Back     alignment and structure
>2as9_A Serine protease; trypsin-like fold, hydrolase; 1.70A {Staphylococcus aureus} Length = 210 Back     alignment and structure
>3lgi_A Protease DEGS; stress-sensor, HTRA, PDZ OMP, hydrolase, serine PR; 1.65A {Escherichia coli} PDB: 2qf3_A 2qf0_A 2rce_A* 3lh3_A* 3b8j_A 2qgr_A 3lh1_A 3lgy_A 3lgu_A 3lgv_A 3lgw_A 3lgt_A 2r3u_A Length = 237 Back     alignment and structure
>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics, PSI, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A Length = 324 Back     alignment and structure
>2w7s_A Serine protease SPLA; hydrolase, family S1; 1.80A {Staphylococcus aureus} PDB: 2w7u_A Length = 200 Back     alignment and structure
>3sti_A Protease DEGQ; serine protease, PDZ domain, chaperone, hydrolase; 2.60A {Escherichia coli} Length = 245 Back     alignment and structure
>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli} Length = 345 Back     alignment and structure
>2w5e_A Putative serine protease; coiled coil, transmembrane, thiol protease, RNA replication, ribosomal frameshifting, catalytic triad, membrane; 2.00A {Human astrovirus 1} Length = 163 Back     alignment and structure
>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A* 1sot_A 1soz_A 1vcw_A 2r3y_A Length = 318 Back     alignment and structure
>1l1j_A Heat shock protease HTRA; hydrolase, serine proteinase; 2.80A {Thermotoga maritima} SCOP: b.47.1.1 Length = 239 Back     alignment and structure
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A Length = 436 Back     alignment and structure
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A Length = 448 Back     alignment and structure
>1agj_A Epidermolytic toxin A; hydrolase, serine protease; 1.70A {Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1dua_A 1exf_A 1due_A Length = 242 Back     alignment and structure
>1qtf_A Exfoliative toxin B; serine protease, superantigen, hydrolase; 2.40A {Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1dt2_A Length = 246 Back     alignment and structure
>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB: 3nzi_A 3nwu_A 2ytw_A 2joa_A Length = 332 Back     alignment and structure
>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor, hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana} Length = 348 Back     alignment and structure
>1p3c_A Glutamyl-endopeptidase; serine protease, hydrolase; 1.50A {Bacillus intermedius} SCOP: b.47.1.1 PDB: 1p3e_A Length = 215 Back     alignment and structure
>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A Length = 451 Back     alignment and structure
>3tjo_A Serine protease HTRA1; peptidase, hydrolase; HET: BOG; 2.30A {Homo sapiens} PDB: 3tjn_A 3nwu_A Length = 231 Back     alignment and structure
>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1 Length = 325 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 746
d1ky9a2249 b.47.1.1 (A:11-259) Protease Do (DegP, HtrA), cata 3e-11
d1ky9a2249 b.47.1.1 (A:11-259) Protease Do (DegP, HtrA), cata 0.004
d1l1ja_228 b.47.1.1 (A:) Protease Do (DegP, HtrA), catalytic 3e-10
d1l1ja_228 b.47.1.1 (A:) Protease Do (DegP, HtrA), catalytic 6e-06
d2z9ia2221 b.47.1.1 (A:6-226) Protease PepD {Mycobacterium tu 4e-08
d2z9ia2221 b.47.1.1 (A:6-226) Protease PepD {Mycobacterium tu 4e-04
d1lcya2205 b.47.1.1 (A:6-210) Mitochondrial serine protease H 1e-07
d2qf3a1210 b.47.1.1 (A:43-252) Stress sensor protease DegS, c 1e-05
d1agja_242 b.47.1.1 (A:) Epidermolytic (exfoliative) toxin A 6e-05
d1qtfa_246 b.47.1.1 (A:) Exfoliative toxin B {Staphylococcus 8e-05
d2o8la1216 b.47.1.1 (A:1-216) V8 protease {Staphylococcus aur 0.004
>d1ky9a2 b.47.1.1 (A:11-259) Protease Do (DegP, HtrA), catalytic domain {Escherichia coli [TaxId: 562]} Length = 249 Back     information, alignment and structure

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Protease Do (DegP, HtrA), catalytic domain
species: Escherichia coli [TaxId: 562]

 Score = 61.9 bits (149), Expect = 3e-11
 Identities = 37/153 (24%), Positives = 64/153 (41%), Gaps = 17/153 (11%)

Query: 505 DPWIWCDAKIVYVCKGPLDVSLLQLGYIPDQLCPID-ADFGQPSLGSAAYVIGHGLFGPR 563
                       V K P     L     P  L  I  AD     +G     IG+      
Sbjct: 106 QLSDGRKFDAKMVGKDPRSDIALIQIQNPKNLTAIKMADSDALRVGDYTVAIGNPFG--- 162

Query: 564 CGLSPSVSSGVVAKVVKANLPSYGQSTLQRNSAYPVMLETTAAVHPGGSGGAVVNLDGHM 623
             L  +V+SG+V+ + ++ L +               ++T AA++ G +GGA+VNL+G +
Sbjct: 163 --LGETVTSGIVSALGRSGLNAENYENF---------IQTDAAINRGNAGGALVNLNGEL 211

Query: 624 IGLVTSNARHGGGTVIPHLNFSIPCAVLRPIFE 656
           IG+ T+     GG +   + F+IP  +++ +  
Sbjct: 212 IGINTAILAPDGGNI--GIGFAIPSNMVKNLTS 242
>d1ky9a2 b.47.1.1 (A:11-259) Protease Do (DegP, HtrA), catalytic domain {Escherichia coli [TaxId: 562]} Length = 249 Back     information, alignment and structure
>d1l1ja_ b.47.1.1 (A:) Protease Do (DegP, HtrA), catalytic domain {Thermotoga maritima [TaxId: 2336]} Length = 228 Back     information, alignment and structure
>d1l1ja_ b.47.1.1 (A:) Protease Do (DegP, HtrA), catalytic domain {Thermotoga maritima [TaxId: 2336]} Length = 228 Back     information, alignment and structure
>d2z9ia2 b.47.1.1 (A:6-226) Protease PepD {Mycobacterium tuberculosis [TaxId: 1773]} Length = 221 Back     information, alignment and structure
>d2z9ia2 b.47.1.1 (A:6-226) Protease PepD {Mycobacterium tuberculosis [TaxId: 1773]} Length = 221 Back     information, alignment and structure
>d1lcya2 b.47.1.1 (A:6-210) Mitochondrial serine protease HtrA2, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 205 Back     information, alignment and structure
>d2qf3a1 b.47.1.1 (A:43-252) Stress sensor protease DegS, catalytic domain {Escherichia coli [TaxId: 562]} Length = 210 Back     information, alignment and structure
>d1agja_ b.47.1.1 (A:) Epidermolytic (exfoliative) toxin A {Staphylococcus aureus [TaxId: 1280]} Length = 242 Back     information, alignment and structure
>d1qtfa_ b.47.1.1 (A:) Exfoliative toxin B {Staphylococcus aureus [TaxId: 1280]} Length = 246 Back     information, alignment and structure
>d2o8la1 b.47.1.1 (A:1-216) V8 protease {Staphylococcus aureus [TaxId: 1280]} Length = 216 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query746
d1ky9a2249 Protease Do (DegP, HtrA), catalytic domain {Escher 100.0
d1l1ja_228 Protease Do (DegP, HtrA), catalytic domain {Thermo 100.0
d2qf3a1210 Stress sensor protease DegS, catalytic domain {Esc 100.0
d2z9ia2221 Protease PepD {Mycobacterium tuberculosis [TaxId: 100.0
d1lcya2205 Mitochondrial serine protease HtrA2, catalytic dom 100.0
d1agja_242 Epidermolytic (exfoliative) toxin A {Staphylococcu 99.94
d1ky9a2249 Protease Do (DegP, HtrA), catalytic domain {Escher 99.93
d1lvmb_219 TEV protease (nucleat inclusion protein A, NIA) {T 99.93
d1l1ja_228 Protease Do (DegP, HtrA), catalytic domain {Thermo 99.86
d2qaaa1185 Protease B {Streptomyces griseus, strain k1 [TaxId 99.85
d1qtfa_246 Exfoliative toxin B {Staphylococcus aureus [TaxId: 99.85
d2o8la1216 V8 protease {Staphylococcus aureus [TaxId: 1280]} 99.83
d2qf3a1210 Stress sensor protease DegS, catalytic domain {Esc 99.77
d2z9ia2221 Protease PepD {Mycobacterium tuberculosis [TaxId: 99.76
d2bhga1199 3C cysteine protease (picornain 3C) {Foot-and-mout 99.72
d1p3ca_215 Glutamyl endopeptidase {Bacillus intermedius [TaxI 99.71
d2h5ca1198 alpha-Lytic protease {Lysobacter enzymogenes, 495 99.71
d2sgaa_181 Protease A {Streptomyces griseus, strain k1 [TaxId 99.7
d1lcya2205 Mitochondrial serine protease HtrA2, catalytic dom 99.65
d1lvmb_219 TEV protease (nucleat inclusion protein A, NIA) {T 99.62
d1hpga_187 Glutamic acid-specific protease {Streptomyces gris 99.55
d1bioa_228 Factor D {Human (Homo sapiens) [TaxId: 9606]} 99.52
d1arba_263 Achromobacter protease {Achromobacter lyticus, str 99.51
d1agja_242 Epidermolytic (exfoliative) toxin A {Staphylococcu 99.48
d1lo6a_221 Kallikrein 6 {Human (Homo sapiens) [TaxId: 9606]} 99.46
d1npma_225 Neuropsin {Mouse (Mus musculus) [TaxId: 10090]} 99.45
d1j16a_223 Trypsin(ogen) {Rat (Rattus norvegicus) [TaxId: 101 99.45
d1mzaa_240 Granzyme K {Human (Homo sapiens) [TaxId: 9606]} 99.45
d2qaaa1185 Protease B {Streptomyces griseus, strain k1 [TaxId 99.44
d1orfa_232 Granzyme A {Human (Homo sapiens) [TaxId: 9606]} 99.44
d1hj8a_222 Trypsin(ogen) {North atlantic salmon (Salmo salar) 99.42
d2z7fe1218 Elastase {Human (Homo sapiens) [TaxId: 9606]} 99.42
d1op0a_234 Venom serine protease {Hundred-pace snake (Agkistr 99.42
d1gdna_224 Trypsin(ogen) {Mold (Fusarium oxysporum) [TaxId: 5 99.41
d1azza_226 Crab collagenase {Atlantic sand fiddler crab (Uca 99.41
d1a7sa_225 Heparin binding protein, HBP {Human (Homo sapiens) 99.41
d1tona_235 Tonin {Rat (Rattus rattus) [TaxId: 10117]} 99.4
d1gvza_237 Prostate specific antigen (PSA kallikrein) {Horse 99.4
g2pka.1232 Kallikrein A {Pig (Sus scrofa) [TaxId: 9823]} 99.4
d1ao5a_237 Kallikrein-13 {Mouse (Mus musculus) [TaxId: 10090] 99.39
d1xx9a_237 Coagulation factor XI {Human (Homo sapiens) [TaxId 99.37
d1si5h_234 Hepatocyte growth factor, HGF {Human (Homo sapiens 99.34
d1eq9a_222 (alpha,gamma)-chymotrypsin(ogen) {Red fire ant (So 99.34
d1fxya_228 Coagulation factor Xa-trypsin chimera {Synthetic, 99.34
d1nn6a_224 Chymase (mast cell protease I) {Human (Homo sapien 99.33
d2bhga1199 3C cysteine protease (picornain 3C) {Foot-and-mout 99.32
d1ekbb_235 Enteropeptidase (enterokinase light chain) {Cow (B 99.31
d1eufa_224 Duodenase {Cow (Bos taurus) [TaxId: 9913]} 99.31
d1fuja_221 Myeloblastin, PR3 {Human (Homo sapiens) [TaxId: 96 99.29
d2f91a1237 Trypsin(ogen) {Narrow-clawed crayfish (Pontastacus 99.29
d1sgfa_228 7S NGF protease subunits {Mouse (Mus musculus) [Ta 99.28
d1rrka1287 Factor B {Human (Homo sapiens) [TaxId: 9606]} 99.27
g1gg6.1238 (alpha,gamma)-chymotrypsin(ogen) {Cow (Bos taurus) 99.27
d1fi8a_227 Granzyme B {Rat (Rattus norvegicus) [TaxId: 10116] 99.27
d2bz6h1254 Coagulation factor VIIa {Human (Homo sapiens) [Tax 99.27
d1rjxb_247 Plasmin(ogen), catalytic domain {Human (Homo sapie 99.27
d1hj9a_223 Trypsin(ogen) {Cow (Bos taurus) [TaxId: 9913]} 99.27
d2hlca_230 HL collagenase {Common cattle grub (Hypoderma line 99.26
d1z8ga1255 Hepsin, catalytic domain {Human (Homo sapiens) [Ta 99.25
d1cqqa_180 3C cysteine protease (picornain 3C) {Human rhinovi 99.25
d1autc_240 Activated protein c (autoprothrombin IIa) {Human ( 99.22
g1fiw.1274 Beta-acrosin {Sheep (Ovis aries) [TaxId: 9940]} 99.22
d1elta_236 Elastase {Salmon (Salmo salar) [TaxId: 8030]} 99.2
g1rtf.1260 Two-chain tissue plasminogen activator (TC)-T-PA { 99.17
d1fq3a_227 Granzyme B {Human (Homo sapiens) [TaxId: 9606]} 99.16
d1rfna_235 Coagulation factor IXa, protease domain {Human (Ho 99.15
d1t32a1224 Cathepsin G {Human (Homo sapiens) [TaxId: 9606]} 99.14
g1gj7.1256 Urokinase-type plasminogen activator (LMW U-PA), c 99.14
d2fpza1243 beta-Tryptase {Human (Homo sapiens) [TaxId: 9606]} 99.14
d1eaxa_241 Matriptase MTSP1 {Human (Homo sapiens) [TaxId: 960 99.13
d1brup_241 Elastase {Pig (Sus scrofa) [TaxId: 9823]} 99.13
d3rp2a_224 Chymase II (mast cell proteinase II) {Rat (Rattus 99.11
d1os8a_223 Trypsin {Streptomyces griseus, strain k1 [TaxId: 1 99.1
d2p3ub1233 Coagulation factor Xa, protease domain {Human (Hom 99.09
d1elva1259 Complement C1S protease, catalytic domain {Human ( 99.08
d1gvkb_240 Elastase {Pig (Sus scrofa) [TaxId: 9823]} 99.07
d1pytd_251 (alpha,gamma)-chymotrypsin(ogen) {Cow (Bos taurus) 99.06
g1h8d.1289 Thrombin {Human (Homo sapiens) [TaxId: 9606]} 99.04
d2sgaa_181 Protease A {Streptomyces griseus, strain k1 [TaxId 99.03
d1fona_232 Procarboxypeptidase A-S6 subunit III (zymogen E) { 99.03
d1m9ua_241 Elastase {Worm (Eisenia fetida) [TaxId: 6396]} 99.01
d2qy0b1240 Complement C1R protease, catalytic domain {Human ( 99.01
d1q3xa1242 Mannan-binding lectin serine protease 2 (MASP-2), 98.99
d1qtfa_246 Exfoliative toxin B {Staphylococcus aureus [TaxId: 98.93
d2h5ca1198 alpha-Lytic protease {Lysobacter enzymogenes, 495 98.92
d2o8la1216 V8 protease {Staphylococcus aureus [TaxId: 1280]} 98.45
d1hpga_187 Glutamic acid-specific protease {Streptomyces gris 98.12
d1l1na_180 3C cysteine protease (picornain 3C) {Human poliovi 98.12
d1p3ca_215 Glutamyl endopeptidase {Bacillus intermedius [TaxI 97.66
d1cqqa_180 3C cysteine protease (picornain 3C) {Human rhinovi 97.65
d1mbma_198 NSP4 proteinase {Equine arteritis virus, EAV [TaxI 97.35
d2h6ma1212 3C cysteine protease (picornain 3C) {Human hepatit 97.12
g1dy9.1187 NS3 protease {Human hepatitis C virus (HCV), diffe 92.46
d1ep5a_156 Viral capsid protein {Venezuelan equine encephalit 91.56
d1wyka_152 Viral capsid protein {Sindbis virus [TaxId: 11034] 91.15
g1dy9.1187 NS3 protease {Human hepatitis C virus (HCV), diffe 89.95
d2fp7b1152 NS3 protease {West nile virus [TaxId: 11082]} 89.91
d1vcpa_149 Viral capsid protein {Semliki forest virus [TaxId: 89.19
d2fomb1150 NS3 protease {Dengue virus type 2 [TaxId: 11060]} 86.88
>d1ky9a2 b.47.1.1 (A:11-259) Protease Do (DegP, HtrA), catalytic domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Protease Do (DegP, HtrA), catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=7e-39  Score=237.77  Aligned_cols=171  Identities=29%  Similarity=0.523  Sum_probs=142.8

Q ss_pred             EEEEEEEEECC-CEEEECCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             35799999089-77997353358877863010488666455788887879877542234468999998534664110000
Q 004542          406 VWASGVLLNDQ-GLILTNAHLLEPWRFGKTTVSGWRNGVSFQPEDSASSGHTGVDQYQKSQTLPPKMPKIVDSSVDEHRA  484 (746)
Q Consensus       406 ~wGSGviVs~~-GlILTNaHVVep~~~~~t~~~g~~~~~~f~~~~~~~~~~~~~~~~~~~q~l~~k~~~~~~~~~~~~~~  484 (746)
                      +.||||+|+++ ||||||+||++          +                                              
T Consensus        76 ~~GSG~iI~~~~g~IlTn~HVv~----------~----------------------------------------------   99 (249)
T d1ky9a2          76 ALGSGVIIDADKGYVVTNNHVVD----------N----------------------------------------------   99 (249)
T ss_dssp             EEEEEEEEETTTTEEEEEHHHHT----------T----------------------------------------------
T ss_pred             CCCCEEEEECCCCEEEEECCCCC----------C----------------------------------------------
T ss_conf             56537998615826986212013----------2----------------------------------------------


Q ss_pred             CCCCCCCCCCEEEEEEECCCCCCEEEEEEEEEECCCCCCEEEEEECCCCCCCCEEECCCC-CCCCCCEEEEEECCCCCCC
Q ss_conf             003334578336999974899741585599962489981699998458999521456999-9999991999902888899
Q 004542          485 YKLSSFSRGHRKIRVRLDHLDPWIWCDAKIVYVCKGPLDVSLLQLGYIPDQLCPIDADFG-QPSLGSAAYVIGHGLFGPR  563 (746)
Q Consensus       485 ~~l~l~~~~~~~I~Vrl~~~~~~~w~~A~VV~v~d~~~DIALLkle~~p~~l~pi~l~~s-~~~~Ge~V~vIG~glf~~~  563 (746)
                               ...+.|++.+++.   +.++++. .|...|+|+|+++. +..+++++++++ .+++|+.|+++||     |
T Consensus       100 ---------~~~~~v~~~~~~~---~~a~~~~-~d~~~dlavl~i~~-~~~~~~~~l~~~~~~~~G~~v~aiG~-----P  160 (249)
T d1ky9a2         100 ---------ATVIKVQLSDGRK---FDAKMVG-KDPRSDIALIQIQN-PKNLTAIKMADSDALRVGDYTVAIGN-----P  160 (249)
T ss_dssp             ---------EEEEEEEETTSCE---EEEEEEE-EETTTTEEEEEESS-CCSCCCCCBCCGGGCCTTCEEEEEEC-----T
T ss_pred             ---------CEEEEEEECCCCC---CCCEEEE-ECCCHHHCEEEECC-CCCCEEEECCCCCCCCCCCEEEEEEC-----C
T ss_conf             ---------0000143023212---3202467-54550001045136-66643777577676776887799954-----5


Q ss_pred             CCCCCEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCEE
Q ss_conf             89998056569952442268877766444688867189975544689877721027927999994002689996567227
Q 004542          564 CGLSPSVSSGVVAKVVKANLPSYGQSTLQRNSAYPVMLETTAAVHPGGSGGAVVNLDGHMIGLVTSNARHGGGTVIPHLN  643 (746)
Q Consensus       564 ~g~~psvt~GiIS~v~~~~~~~~~~~~~~~~~~~~~mIqTtAav~~G~SGGPLvd~~G~VIGIvtsna~~~~G~~~p~ln  643 (746)
                      +++..+++.|+++...+...         .......+|||||++++|+|||||||.+|+||||+++.....++..  +++
T Consensus       161 ~g~~~tvt~~~~~~~~~~~~---------~~~~~~~~iqtda~i~~GnSGGPl~n~~G~vIGI~t~~~~~~~~~~--gi~  229 (249)
T d1ky9a2         161 FGLGETVTSGIVSALGRSGL---------NAENYENFIQTDAAINRGNAGGALVNLNGELIGINTAILAPDGGNI--GIG  229 (249)
T ss_dssp             TSSSCEEEEEEEEEESSCC--------------CCCCEEESCCCTTSCCCSEEECTTSCEEEEEECSSTTSCCCS--SSE
T ss_pred             CCCCCCEEECCEEECCCCCC---------CCCCCCCEEEEEEEECCCCCCCEEECCCCEEEEEEEEEECCCCCCC--CEE
T ss_conf             34688562020110133443---------5766555489820245888776188889889999978863678856--579


Q ss_pred             EEEEHHHHHHHHHHHHHCC
Q ss_conf             9970457999999999606
Q 004542          644 FSIPCAVLRPIFEFARDMQ  662 (746)
Q Consensus       644 FaIPi~~L~~il~~~~~~~  662 (746)
                      |+||++.++++++++.+.|
T Consensus       230 faIP~~~~~~~~~~l~~~G  248 (249)
T d1ky9a2         230 FAIPSNMVKNLTSQMVEYG  248 (249)
T ss_dssp             EEEEHHHHHHHHHHHHHHS
T ss_pred             EEEEHHHHHHHHHHHHHHC
T ss_conf             9987999999999999749
>d1l1ja_ b.47.1.1 (A:) Protease Do (DegP, HtrA), catalytic domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2qf3a1 b.47.1.1 (A:43-252) Stress sensor protease DegS, catalytic domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2z9ia2 b.47.1.1 (A:6-226) Protease PepD {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1lcya2 b.47.1.1 (A:6-210) Mitochondrial serine protease HtrA2, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1agja_ b.47.1.1 (A:) Epidermolytic (exfoliative) toxin A {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1ky9a2 b.47.1.1 (A:11-259) Protease Do (DegP, HtrA), catalytic domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1lvmb_ b.47.1.3 (B:) TEV protease (nucleat inclusion protein A, NIA) {Tobacco etch virus, TEV [TaxId: 12227]} Back     information, alignment and structure
>d1l1ja_ b.47.1.1 (A:) Protease Do (DegP, HtrA), catalytic domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2qaaa1 b.47.1.1 (A:16-242) Protease B {Streptomyces griseus, strain k1 [TaxId: 1911]} Back     information, alignment and structure
>d1qtfa_ b.47.1.1 (A:) Exfoliative toxin B {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d2o8la1 b.47.1.1 (A:1-216) V8 protease {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d2qf3a1 b.47.1.1 (A:43-252) Stress sensor protease DegS, catalytic domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2z9ia2 b.47.1.1 (A:6-226) Protease PepD {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2bhga1 b.47.1.4 (A:7-205) 3C cysteine protease (picornain 3C) {Foot-and-mouth disease virus FMDV [TaxId: 12110]} Back     information, alignment and structure
>d1p3ca_ b.47.1.1 (A:) Glutamyl endopeptidase {Bacillus intermedius [TaxId: 1400]} Back     information, alignment and structure
>d2h5ca1 b.47.1.1 (A:15A-245) alpha-Lytic protease {Lysobacter enzymogenes, 495 [TaxId: 69]} Back     information, alignment and structure
>d2sgaa_ b.47.1.1 (A:) Protease A {Streptomyces griseus, strain k1 [TaxId: 1911]} Back     information, alignment and structure
>d1lcya2 b.47.1.1 (A:6-210) Mitochondrial serine protease HtrA2, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1lvmb_ b.47.1.3 (B:) TEV protease (nucleat inclusion protein A, NIA) {Tobacco etch virus, TEV [TaxId: 12227]} Back     information, alignment and structure
>d1hpga_ b.47.1.1 (A:) Glutamic acid-specific protease {Streptomyces griseus [TaxId: 1911]} Back     information, alignment and structure
>d1bioa_ b.47.1.2 (A:) Factor D {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1arba_ b.47.1.1 (A:) Achromobacter protease {Achromobacter lyticus, strain m497-1 [TaxId: 224]} Back     information, alignment and structure
>d1agja_ b.47.1.1 (A:) Epidermolytic (exfoliative) toxin A {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1lo6a_ b.47.1.2 (A:) Kallikrein 6 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1npma_ b.47.1.2 (A:) Neuropsin {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1j16a_ b.47.1.2 (A:) Trypsin(ogen) {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1mzaa_ b.47.1.2 (A:) Granzyme K {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2qaaa1 b.47.1.1 (A:16-242) Protease B {Streptomyces griseus, strain k1 [TaxId: 1911]} Back     information, alignment and structure
>d1orfa_ b.47.1.2 (A:) Granzyme A {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hj8a_ b.47.1.2 (A:) Trypsin(ogen) {North atlantic salmon (Salmo salar) [TaxId: 8030]} Back     information, alignment and structure
>d2z7fe1 b.47.1.2 (E:16-243) Elastase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1op0a_ b.47.1.2 (A:) Venom serine protease {Hundred-pace snake (Agkistrodon acutus) [TaxId: 36307]} Back     information, alignment and structure
>d1gdna_ b.47.1.2 (A:) Trypsin(ogen) {Mold (Fusarium oxysporum) [TaxId: 5507]} Back     information, alignment and structure
>d1azza_ b.47.1.2 (A:) Crab collagenase {Atlantic sand fiddler crab (Uca pugilator) [TaxId: 6772]} Back     information, alignment and structure
>d1a7sa_ b.47.1.2 (A:) Heparin binding protein, HBP {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1tona_ b.47.1.2 (A:) Tonin {Rat (Rattus rattus) [TaxId: 10117]} Back     information, alignment and structure
>d1gvza_ b.47.1.2 (A:) Prostate specific antigen (PSA kallikrein) {Horse (Equus caballus) [TaxId: 9796]} Back     information, alignment and structure
>d1ao5a_ b.47.1.2 (A:) Kallikrein-13 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1xx9a_ b.47.1.2 (A:) Coagulation factor XI {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1si5h_ b.47.1.2 (H:) Hepatocyte growth factor, HGF {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1eq9a_ b.47.1.2 (A:) (alpha,gamma)-chymotrypsin(ogen) {Red fire ant (Solenopsis invicta) [TaxId: 13686]} Back     information, alignment and structure
>d1fxya_ b.47.1.2 (A:) Coagulation factor Xa-trypsin chimera {Synthetic, based on Homo sapiens sequence} Back     information, alignment and structure
>d1nn6a_ b.47.1.2 (A:) Chymase (mast cell protease I) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bhga1 b.47.1.4 (A:7-205) 3C cysteine protease (picornain 3C) {Foot-and-mouth disease virus FMDV [TaxId: 12110]} Back     information, alignment and structure
>d1ekbb_ b.47.1.2 (B:) Enteropeptidase (enterokinase light chain) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1eufa_ b.47.1.2 (A:) Duodenase {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1fuja_ b.47.1.2 (A:) Myeloblastin, PR3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2f91a1 b.47.1.2 (A:16-244) Trypsin(ogen) {Narrow-clawed crayfish (Pontastacus leptodactylus) [TaxId: 6717]} Back     information, alignment and structure
>d1sgfa_ b.47.1.2 (A:) 7S NGF protease subunits {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1rrka1 b.47.1.2 (A:453-739) Factor B {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fi8a_ b.47.1.2 (A:) Granzyme B {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d2bz6h1 b.47.1.2 (H:16-257) Coagulation factor VIIa {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rjxb_ b.47.1.2 (B:) Plasmin(ogen), catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hj9a_ b.47.1.2 (A:) Trypsin(ogen) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d2hlca_ b.47.1.2 (A:) HL collagenase {Common cattle grub (Hypoderma lineatum) [TaxId: 7389]} Back     information, alignment and structure
>d1z8ga1 b.47.1.2 (A:163-417) Hepsin, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1cqqa_ b.47.1.4 (A:) 3C cysteine protease (picornain 3C) {Human rhinovirus 2 [TaxId: 12130]} Back     information, alignment and structure
>d1autc_ b.47.1.2 (C:) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1elta_ b.47.1.2 (A:) Elastase {Salmon (Salmo salar) [TaxId: 8030]} Back     information, alignment and structure
>d1fq3a_ b.47.1.2 (A:) Granzyme B {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rfna_ b.47.1.2 (A:) Coagulation factor IXa, protease domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1t32a1 b.47.1.2 (A:16-244) Cathepsin G {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fpza1 b.47.1.2 (A:16-244) beta-Tryptase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1eaxa_ b.47.1.2 (A:) Matriptase MTSP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1brup_ b.47.1.2 (P:) Elastase {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d3rp2a_ b.47.1.2 (A:) Chymase II (mast cell proteinase II) {Rat (Rattus rattus) [TaxId: 10117]} Back     information, alignment and structure
>d1os8a_ b.47.1.1 (A:) Trypsin {Streptomyces griseus, strain k1 [TaxId: 1911]} Back     information, alignment and structure
>d2p3ub1 b.47.1.2 (B:16-243) Coagulation factor Xa, protease domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1elva1 b.47.1.2 (A:410-668) Complement C1S protease, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gvkb_ b.47.1.2 (B:) Elastase {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1pytd_ b.47.1.2 (D:) (alpha,gamma)-chymotrypsin(ogen) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d2sgaa_ b.47.1.1 (A:) Protease A {Streptomyces griseus, strain k1 [TaxId: 1911]} Back     information, alignment and structure
>d1fona_ b.47.1.2 (A:) Procarboxypeptidase A-S6 subunit III (zymogen E) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1m9ua_ b.47.1.2 (A:) Elastase {Worm (Eisenia fetida) [TaxId: 6396]} Back     information, alignment and structure
>d2qy0b1 b.47.1.2 (B:447-686) Complement C1R protease, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1q3xa1 b.47.1.2 (A:445-686) Mannan-binding lectin serine protease 2 (MASP-2), catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qtfa_ b.47.1.1 (A:) Exfoliative toxin B {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d2h5ca1 b.47.1.1 (A:15A-245) alpha-Lytic protease {Lysobacter enzymogenes, 495 [TaxId: 69]} Back     information, alignment and structure
>d2o8la1 b.47.1.1 (A:1-216) V8 protease {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1hpga_ b.47.1.1 (A:) Glutamic acid-specific protease {Streptomyces griseus [TaxId: 1911]} Back     information, alignment and structure
>d1l1na_ b.47.1.4 (A:) 3C cysteine protease (picornain 3C) {Human poliovirus 1 Mahoney [TaxId: 12081]} Back     information, alignment and structure
>d1p3ca_ b.47.1.1 (A:) Glutamyl endopeptidase {Bacillus intermedius [TaxId: 1400]} Back     information, alignment and structure
>d1cqqa_ b.47.1.4 (A:) 3C cysteine protease (picornain 3C) {Human rhinovirus 2 [TaxId: 12130]} Back     information, alignment and structure
>d1mbma_ b.47.1.3 (A:) NSP4 proteinase {Equine arteritis virus, EAV [TaxId: 11047]} Back     information, alignment and structure
>d2h6ma1 b.47.1.4 (A:1-212) 3C cysteine protease (picornain 3C) {Human hepatitis A virus [TaxId: 208726]} Back     information, alignment and structure
>d1ep5a_ b.47.1.3 (A:) Viral capsid protein {Venezuelan equine encephalitis virus [TaxId: 11036]} Back     information, alignment and structure
>d1wyka_ b.47.1.3 (A:) Viral capsid protein {Sindbis virus [TaxId: 11034]} Back     information, alignment and structure
>d2fp7b1 b.47.1.3 (B:19-170) NS3 protease {West nile virus [TaxId: 11082]} Back     information, alignment and structure
>d1vcpa_ b.47.1.3 (A:) Viral capsid protein {Semliki forest virus [TaxId: 11033]} Back     information, alignment and structure
>d2fomb1 b.47.1.3 (B:18-167) NS3 protease {Dengue virus type 2 [TaxId: 11060]} Back     information, alignment and structure