Citrus Sinensis ID: 004548

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-----

MEEDLLVSGEASGNNRNNDNNRRRRGPTALFRRRTDAITRGSPYQKAAALVDLAEDGIGLPEEILDRSSFESSAKFYFIFIKFDYIWSLNYFALIVLNFLEKPLWCAKTGVGTYSCYDREYYYLGQLPYLTGWESLVYEGITLVILIIHTFFPITYEGSPIFWKSTYTRLKVLCLLILVADFLVYGLYLSPIAFNFLPLRIAPYIRVVFFILNIRQLRDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAYVIFEDTVQGNMVFTSFGTTLYQMFVLFTTSNNPDVWIPAYKASRWYCLFFVLYVLIGVYFVTNLILAVVYDSFKSQLAKQVSEMDRMRRRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAIALRFQKEDVPSCFENLPSIYHSPFSEKLKAFIRSTKFGYMISIILIVNLVAVIVETTLDIQESSLQSVWQEVEFVFGWIYVLEMALKIYSYGFENYWRDGQNRFDFLVTWVIVIGETITLASPNGQTFLSNGEWIRYLLLARMLRLIRLLMHVQQYRGFVATFLTLIPSLMPYLGTIFCVQCIYCSLGVQIFGGIVNAGNAKLEETDLADDDYLLFNFNDYPNGMVTLFNLLVMGNWQVWMQSYKELTGTAWTLAYFVSFYLITVLLLLNLVIAFVLEAFFAEMELESSEKCEEEDKDGEPRERRRRVGTKTRSQKVDVLLHHMLSAELQKSCDS

ccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHccccccEEEEEEEHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHEEEEEEEccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHcccccccccHHHHHcHHHHHHHHcccccccccccccccccccHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHccccccccHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHcccccHHHHHHHHHHHcccEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHcccccHHHHHHHccccccccHHHHHHHHHHHHHHHccccc

ccHHHccccccccccccccccccccccccccccccHHHHcccHHHHHHHHHHHHHccccccHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHEEccccHHHcHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHccHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEccccccccccccccHHHHHHHHHHHHHHcccccHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHcccHHHcccccccccccccccccccHccccccccccccccccHHHHHHHHcccccccccccccccccccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEcccccccccccccccccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHccccc

MEEDLLVSgeasgnnrnndnnrrrrgptalfrrrtdaitrgspyQKAAALVDLaedgiglpeeildrssfessAKFYFIFIKFDYIWSLNYFALIVLNFLEKplwcaktgvgtyscydreyyylgqlpyltgweSLVYEGITLVILIIHTffpityegspifwkSTYTRLKVLCLLILVADFLVYGlylspiafnflplriapyIRVVFFILNIRQLRDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAYVIFEDTVQGNMVFTSFGTTLYQMFVLFttsnnpdvwipaykasrWYCLFFVLYVLIGVYFVTNLILAVVYDSFKSQLAKQVSEMDRMRRRTLGKafnlidnynvgflNKEQCIKLFEELNkyrtlpnisreEFELIFDElddthdfkINLDEFADLCNAIALRfqkedvpscfenlpsiyhspfSEKLKAFIRSTKFGYMISIILIVNLVAVIVETTLDIQESSLQSVWQEVEFVFGWIYVLEMALKIYSYGFENywrdgqnrFDFLVTWVIVIGETitlaspngqtflsnGEWIRYLLLARMLRLIRLLMHVQQYRGFVATFLTLipslmpylgtIFCVQCIYCSLGVQIFGGivnagnakleetdladddyllfnfndypngMVTLFNLLVMGNWQVWMQSYKELTGTAWTLAYFVSFYLITVLLLLNLVIAFVLEAFFAEMelessekceeedkdgeprerrrrvgtktrSQKVDVLLHHMLSAELQKSCDS

meedllvsgeasgnnrnndnnrrrrgptalfrrrtdaitrgspyqKAAALVDLAEDGIGLPEEILDRSSFESSAKFYFIFIKFDYIWSLNYFALIVLNFLEKPLWCAKTGVGTYSCYDREYYYLGQLPYLTGWESLVYEGITLVILIIHTFFPITYEGSPIFWKSTYTRLKVLCLLILVADFLVYGLYLSPIAFNFLPLRIAPYIRVVFFILNIRQLRDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAYVIFEDTVQGNMVFTSFGTTLYQMFVLFTTSNNPDVWIPAYKASRWYCLFFVLYVLIGVYFVTNLILAVVYDSFKSQLAKQVSEMDRMRRRTLGKafnlidnynvgFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAIALRFQKEDVPSCFENLPSIYHSPFSEKLKAFIRSTKFGYMISIILIVNLVAVIVETTLDIQESSLQSVWQEVEFVFGWIYVLEMALKIYSYGFENYWRDGQNRFDFLVTWVIVIGETItlaspngqtflsNGEWIRYLLLARMLRLIRLLMHVQQYRGFVATFLTLIPSLMPYLGTIFCVQCIYCSLGVQIFGGIVNAGNAKLEETDLADDDYLLFNFNDYPNGMVTLFNLLVMGNWQVWMQSYKELTGTAWTLAYFVSFYLITVLLLLNLVIAFVLEAFFAEMelessekceeedkdgeprerrrrvgtktrsqkvdVLLHHmlsaelqkscds

MEEDLLVSGEASGnnrnndnnrrrrGPTALFRRRTDAITRGSPYQKAAALVDLAEDGIGLPEEILDRSSFESSAkfyfifikfdyiWSLNYFALIVLNFLEKPLWCAKTGVGTYSCYDREYYYLGQLPYLTGWESLVYEGITLVILIIHTFFPITYEGSPIFWKSTYTRLKVLCLLILVADFLVYGLYLSPIAFNFLPLRIAPYIRVVFFILNIRQLRDTLFVLAGMLGTYLNVlalgllfllfsswlaYVIFEDTVQGNMVFTSFGTTLYQMFVLFTTSNNPDVWIPAYKASRWYCLFFVLYVLIGVYFVTNLILAVVYDSFKSQLAKQVSEMDRMRRRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISReefelifdelddTHDFKINLDEFADLCNAIALRFQKEDVPSCFENLPSIYHSPFSEKLKAFIRSTKFGYMisiilivnlvavivETTLDIQESSLQSVWQEVEFVFGWIYVLEMALKIYSYGFENYWRDGQNRFDFLVTWVIVIGETITLASPNGQTFLSNGEWIrylllarmlrlirllMHVQQYRGFVATFLTLIPSLMPYLGTIFCVQCIYCSLGVQIFGGIVNAGNAKLEETDLADDDYLLFNFNDYPNGMVTLFNLLVMGNWQVWMQSYKELTGTAWTLAYFVSFYlitvllllnlviafvlEAFFAemelessekceeedkdgeprerrrrvgtktrSQKVDVLLHHMLSAELQKSCDS

*******************************************YQKAAALVDLAEDGIGLPEEILDRSSFESSAKFYFIFIKFDYIWSLNYFALIVLNFLEKPLWCAKTGVGTYSCYDREYYYLGQLPYLTGWESLVYEGITLVILIIHTFFPITYEGSPIFWKSTYTRLKVLCLLILVADFLVYGLYLSPIAFNFLPLRIAPYIRVVFFILNIRQLRDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAYVIFEDTVQGNMVFTSFGTTLYQMFVLFTTSNNPDVWIPAYKASRWYCLFFVLYVLIGVYFVTNLILAVVYDSFKSQLAKQV****RMRRRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAIALRFQKEDVPSCFENLPSIYHSPFSEKLKAFIRSTKFGYMISIILIVNLVAVIVETTLDIQESSLQSVWQEVEFVFGWIYVLEMALKIYSYGFENYWRDGQNRFDFLVTWVIVIGETITLASPNGQTFLSNGEWIRYLLLARMLRLIRLLMHVQQYRGFVATFLTLIPSLMPYLGTIFCVQCIYCSLGVQIFGGIVNAGNAKLEETDLADDDYLLFNFNDYPNGMVTLFNLLVMGNWQVWMQSYKELTGTAWTLAYFVSFYLITVLLLLNLVIAFVLEAFFAE****************************************************

*******************************************YQKAAALVDLAEDGIGLPEEILDRSSFESSAKFYFIFIKFDYIWSLNYFALIVLNFLEKPLWCAKTGVGTYSCYDREYYYLGQLPYLTGWESLVYEGITLVILIIHTFFPITYEGSPIFWKSTYTRLKVLCLLILVADFLVYGLYLSPIAFNFLPLRIAPYIRVVFFILNIRQLRDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAYVIFEDTVQGNMVFTSFGTTLYQMFVLFTTSNNPDVWIPAYKASRWYCLFFVLYVLIGVYFVTNLILAVVYDSFKSQLAKQVS*MDRMRRRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFEL****************EFADLCNAIALRFQK****SCFENLPSIYHSPFSEKLKAFIRSTKFGYMISIILIVNLVAVIVETTLDIQESSLQSVWQEVEFVFGWIYVLEMALKIYSYGFENYWRDGQNRFDFLVTWVIVIGETITLASPNGQTFLSNGEWIRYLLLARMLRLIRLLMHVQQYRGFVATFLTLIPSLMPYLGTIFCVQCIYCSLGVQIFGGIVNAGNAKLEETDLADDDYLLFNFNDYPNGMVTLFNLLVMGNWQVWMQSYKELTGTAWTLAYFVSFYLITVLLLLNLVIAFVLEAFFA*****************************************************

********************************RRTDAITRGSPYQKAAALVDLAEDGIGLPEEILDRSSFESSAKFYFIFIKFDYIWSLNYFALIVLNFLEKPLWCAKTGVGTYSCYDREYYYLGQLPYLTGWESLVYEGITLVILIIHTFFPITYEGSPIFWKSTYTRLKVLCLLILVADFLVYGLYLSPIAFNFLPLRIAPYIRVVFFILNIRQLRDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAYVIFEDTVQGNMVFTSFGTTLYQMFVLFTTSNNPDVWIPAYKASRWYCLFFVLYVLIGVYFVTNLILAVVYDSFKSQLAKQVSEMDRMRRRTLGKAFNLIDNYNVGFLNKEQCIK************************************DEFADLCNAIALRFQKEDVPSCFENLPSIYHSPFSEKLKAFIRSTKFGYMISIILIVNLVAVIVETTLDIQESSLQSVWQEVEFVFGWIYVLEMALKIYSYGFENYWRDGQNRFDFLVTWVIVIGETITLASPNGQTFLSNGEWIRYLLLARMLRLIRLLMHVQQYRGFVATFLTLIPSLMPYLGTIFCVQCIYCSLGVQIFGGIVNAGNAKLEETDLADDDYLLFNFNDYPNGMVTLFNLLVMGNWQVWMQSYKELTGTAWTLAYFVSFYLITVLLLLNLVIAFVLEAFFAEMELESSEKCEEEDKDGEPR*****************LL*****AEL******

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		745	2.2.26 [Sep-21-2011]
Q94KI8		733	Two pore calcium channel	yes	no	0.947	0.963	0.739	0.0
Q75VR1		735	Two pore calcium channel	N/A	no	0.981	0.994	0.716	0.0
Q75VR0		735	Two pore calcium channel	N/A	no	0.982	0.995	0.717	0.0
Q5QM84		757	Two pore calcium channel	yes	no	0.943	0.928	0.647	0.0
Q6YLX9		742	Two pore calcium channel	N/A	no	0.985	0.989	0.610	0.0
Q6S5H8		742	Two pore calcium channel	N/A	no	0.985	0.989	0.610	0.0
Q9ULQ1		816	Two pore calcium channel	yes	no	0.574	0.524	0.282	2e-38
Q9WTN5		817	Two pore calcium channel	yes	no	0.573	0.522	0.277	6e-38
Q9EQJ0		817	Two pore calcium channel	yes	no	0.567	0.517	0.277	3e-37
Q8BWC0		731	Two pore calcium channel	no	no	0.661	0.674	0.261	9e-36

>sp\|Q94KI8\|TPC1_ARATH Two pore calcium channel protein 1 OS=Arabidopsis thaliana GN=TPC1 PE=1 SV=1	Back alignment and function desciption

 Score = 1088 bits (2813), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 524/709 (73%), Positives = 606/709 (85%), Gaps = 3/709 (0%)

Query: 33  RRTDAITRGSPYQKAAALVDLAEDGIGLPEEILDRSSFESSAKFYFIFIKFDYIWSLNYF 92
           RR++AIT G+P+QKAAALVDLAEDGIGLP EILD+SSF  SA++YFIF + D IWSLNYF
Sbjct: 20  RRSEAITHGTPFQKAAALVDLAEDGIGLPVEILDQSSFGESARYYFIFTRLDLIWSLNYF 79

Query: 93  ALIVLNFLEKPLWCAKTGVGTYSCYDREYYYLGQLPYLTGWESLVYEGITLVILIIHTFF 152
           AL+ LNF E+PLWC K      SC DR+YYYLG+LPYLT  ES++YE ITL IL++HTFF
Sbjct: 80  ALLFLNFFEQPLWCEKNP--KPSCKDRDYYYLGELPYLTNAESIIYEVITLAILLVHTFF 137

Query: 153 PITYEGSPIFWKSTYTRLKVLCLLILVADFLVYGLYLSPIAFNFLPLRIAPYIRVVFFIL 212
           PI+YEGS IFW S    +KV C++IL  D LV  LYLSP+AF+FLP RIAPY+RV+ FIL
Sbjct: 138 PISYEGSRIFWTSRLNLVKVACVVILFVDVLVDFLYLSPLAFDFLPFRIAPYVRVIIFIL 197

Query: 213 NIRQLRDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAYVIFEDTVQGNMVFTSFGTTLYQ 272
           +IR+LRDTL +L+GMLGTYLN+LAL +LFLLF+SW+A+V+FEDT QG  VFTS+G TLYQ
Sbjct: 198 SIRELRDTLVLLSGMLGTYLNILALWMLFLLFASWIAFVMFEDTQQGLTVFTSYGATLYQ 257

Query: 273 MFVLFTTSNNPDVWIPAYKASRWYCLFFVLYVLIGVYFVTNLILAVVYDSFKSQLAKQVS 332
           MF+LFTTSNNPDVWIPAYK+SRW  +FFVLYVLIGVYFVTNLILAVVYDSFK QLAKQVS
Sbjct: 258 MFILFTTSNNPDVWIPAYKSSRWSSVFFVLYVLIGVYFVTNLILAVVYDSFKEQLAKQVS 317

Query: 333 EMDRMRRRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDD 392
            MD+M+RR L KAF LID+   G ++K QCIKLFE+L  YRTLP IS+EEF LIFDELDD
Sbjct: 318 GMDQMKRRMLEKAFGLIDSDKNGEIDKNQCIKLFEQLTNYRTLPKISKEEFGLIFDELDD 377

Query: 393 THDFKINLDEFADLCNAIALRFQKEDVPSCFENLPSIYHSPFSEKLKAFIRSTKFGYMIS 452
           T DFKIN DEFADLC AIALRFQKE+VPS FE+ P IYHS  S++L+AF+RS  FGY IS
Sbjct: 378 TRDFKINKDEFADLCQAIALRFQKEEVPSLFEHFPQIYHSALSQQLRAFVRSPNFGYAIS 437

Query: 453 IILIVNLVAVIVETTLDIQESSLQSVWQEVEFVFGWIYVLEMALKIYSYGFENYWRDGQN 512
            ILI+N +AV+VETTLDI+ESS Q  WQ  EFVFGWIYVLEMALKIY+YGFENYWR+G N
Sbjct: 438 FILIINFIAVVVETTLDIEESSAQKPWQVAEFVFGWIYVLEMALKIYTYGFENYWREGAN 497

Query: 513 RFDFLVTWVIVIGETITLASPNGQTFLSNGEWIRYLLLARMLRLIRLLMHVQQYRGFVAT 572
           RFDFLVTWVIVIGET T  +P+  TF SNGEWIRYLLLARMLRLIRLLM+VQ+YR F+AT
Sbjct: 498 RFDFLVTWVIVIGETATFITPDENTFFSNGEWIRYLLLARMLRLIRLLMNVQRYRAFIAT 557

Query: 573 FLTLIPSLMPYLGTIFCVQCIYCSLGVQIFGGIVNAGNAKLEETDLADDDYLLFNFNDYP 632
           F+TLIPSLMPYLGTIFCV CIYCS+GVQ+FGG+VNAGN KL ET+LA+DDYLLFNFNDYP
Sbjct: 558 FITLIPSLMPYLGTIFCVLCIYCSIGVQVFGGLVNAGNKKLFETELAEDDYLLFNFNDYP 617

Query: 633 NGMVTLFNLLVMGNWQVWMQSYKELTGTAWTLAYFVSFYLITVLLLLNLVIAFVLEAFFA 692
           NGMVTLFNLLVMGNWQVWM+SYK+LTGT W++ YFVSFY+IT+LLLLNLV+AFVLEAFF 
Sbjct: 618 NGMVTLFNLLVMGNWQVWMESYKDLTGTWWSITYFVSFYVITILLLLNLVVAFVLEAFFT 677

Query: 693 EMELESSEKCEEEDKDGEPRERRRRVGTKTRSQKVDVLLHHMLSAELQK 741
           E++LE  EKC+ +D   E R RRR  G+K+RSQ+VD LLHHML  EL K
Sbjct: 678 ELDLEEEEKCQGQDSQ-EKRNRRRSAGSKSRSQRVDTLLHHMLGDELSK 725

Functions as a voltage-gated inward-rectifying Ca(2+) channel (VDCC) across the vacuole membrane. Is one of the essential components of the slow vacuolar (SV) channel. Acts as the major ROS-responsive Ca(2+) channel and is the possible target of Al-dependent inhibition. Involved in the regulation of germination and stomatal movement.
Arabidopsis thaliana (taxid: 3702)

>sp\|Q75VR1\|TPC1A_TOBAC Two pore calcium channel protein 1A OS=Nicotiana tabacum GN=TPC1A PE=2 SV=1	Back alignment and function description

>sp\|Q75VR0\|TPC1B_TOBAC Two pore calcium channel protein 1B OS=Nicotiana tabacum GN=TPC1B PE=2 SV=1	Back alignment and function description

>sp\|Q5QM84\|TPC1_ORYSJ Two pore calcium channel protein 1 OS=Oryza sativa subsp. japonica GN=TPC1 PE=1 SV=2	Back alignment and function description

>sp\|Q6YLX9\|TPC1_WHEAT Two pore calcium channel protein 1 OS=Triticum aestivum GN=TPC1 PE=2 SV=1	Back alignment and function description

>sp\|Q6S5H8\|TPC1_HORVU Two pore calcium channel protein 1 OS=Hordeum vulgare GN=TPC1 PE=2 SV=1	Back alignment and function description

>sp\|Q9ULQ1\|TPC1_HUMAN Two pore calcium channel protein 1 OS=Homo sapiens GN=TPCN1 PE=1 SV=3	Back alignment and function description

>sp\|Q9WTN5\|TPC1_RAT Two pore calcium channel protein 1 OS=Rattus norvegicus GN=Tpcn1 PE=1 SV=2	Back alignment and function description

>sp\|Q9EQJ0\|TPC1_MOUSE Two pore calcium channel protein 1 OS=Mus musculus GN=Tpcn1 PE=2 SV=1	Back alignment and function description

>sp\|Q8BWC0\|TPC2_MOUSE Two pore calcium channel protein 2 OS=Mus musculus GN=Tpcn2 PE=1 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		745
302143292		732	unnamed protein product [Vitis vinifera]	0.974	0.991	0.744	0.0
18412295		733	two pore calcium channel protein 1 [Arab	0.947	0.963	0.739	0.0
449438094		738	PREDICTED: two pore calcium channel prot	0.944	0.953	0.760	0.0
14041819		733	two-pore calcium channel [Arabidopsis th	0.947	0.963	0.734	0.0
255553747		743	Voltage-dependent L-type calcium channel	0.931	0.934	0.782	0.0
75326539		735	RecName: Full=Two pore calcium channel p	0.981	0.994	0.716	0.0
224121708		726	predicted protein [Populus trichocarpa]	0.965	0.990	0.754	0.0
297813953		732	two-pore channel 1 [Arabidopsis lyrata s	0.963	0.980	0.733	0.0
75326538		735	RecName: Full=Two pore calcium channel p	0.982	0.995	0.717	0.0
4206210		724	putative calcium channel [Arabidopsis th	0.924	0.951	0.712	0.0

>gi\|302143292\|emb\|CBI21853.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

 Score = 1093 bits (2826), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 549/737 (74%), Positives = 637/737 (86%), Gaps = 11/737 (1%)

Query: 6   LVSGEASGNNRNNDNNRRRRGPTALFRRRTDAITRGSPYQKAAALVDLAEDGIGLPEEIL 65
           L+ GE+SG         RRRG T +F RR+DAI  GSPYQKAAALVDLAEDGIGLPE++L
Sbjct: 5   LLDGESSGG--------RRRGQTPVFHRRSDAIAYGSPYQKAAALVDLAEDGIGLPEQML 56

Query: 66  DRSSFESSAKFYFIFIKFDYIWSLNYFALIVLNFLEKPLWCAKTGVGTYSCYDREYYYLG 125
           D+ SFES+AKFYFIFI+F+++WSLN FALIVLNFLEKPLWCAK    TYSC DREYY+LG
Sbjct: 57  DQESFESAAKFYFIFIRFNFLWSLNLFALIVLNFLEKPLWCAKQT--TYSCNDREYYFLG 114

Query: 126 QLPYLTGWESLVYEGITLVILIIHTFFPITYEGSPIFWKSTYTRLKVLCLLILVADFLVY 185
           QLPYLT  ESL+YEGITLVI+++HTFFPI+YEGS I+WK+   RLKV+ L ILVAD LVY
Sbjct: 115 QLPYLTSVESLIYEGITLVIILLHTFFPISYEGSQIYWKNPLNRLKVILLSILVADLLVY 174

Query: 186 GLYLSPIAFNFLPLRIAPYIRVVFFILNIRQLRDTLFVLAGMLGTYLNVLALGLLFLLFS 245
            LYLSP+ F +LP R+APYIRV+  ILNIR++R T+ +LAGMLGTYLN++ALGLLFLLF+
Sbjct: 175 VLYLSPLPFYYLPFRLAPYIRVILCILNIREVRATMVILAGMLGTYLNIMALGLLFLLFA 234

Query: 246 SWLAYVIFEDTVQGNMVFTSFGTTLYQMFVLFTTSNNPDVWIPAYKASRWYCLFFVLYVL 305
           SW+AYV+FEDT QG  VFTS+ TTLYQMF+LFTTSNNPDVWIPAYK SRWYCLFFVLY+L
Sbjct: 235 SWVAYVMFEDTQQGKTVFTSYLTTLYQMFILFTTSNNPDVWIPAYKVSRWYCLFFVLYML 294

Query: 306 IGVYFVTNLILAVVYDSFKSQLAKQVSEMDRMRRRTLGKAFNLIDNYNVGFLNKEQCIKL 365
           +GVYF+TNLILAV+YDSFK+QLAKQV+EMDRMRRR L KAFNLID  N+GFL KEQCI L
Sbjct: 295 LGVYFMTNLILAVIYDSFKNQLAKQVAEMDRMRRRILEKAFNLIDKSNLGFLKKEQCIHL 354

Query: 366 FEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAIALRFQKEDVPSCFEN 425
           FEELNKYR+LP ISRE+FELIFDELDD++DFKINLDEF DLCNAI L FQKED  S FE 
Sbjct: 355 FEELNKYRSLPKISREDFELIFDELDDSNDFKINLDEFFDLCNAITLSFQKEDSQSWFER 414

Query: 426 LPSIYHSPFSEKLKAFIRSTKFGYMISIILIVNLVAVIVETTLDIQESSLQSVWQEVEFV 485
            PS YHSP  EKLKAF+RS+ FG MI++IL++NLVAVI+ETTLDI+ +S Q VWQ+VEFV
Sbjct: 415 YPSFYHSPACEKLKAFVRSSIFGNMIAVILVLNLVAVIIETTLDIENNSAQKVWQKVEFV 474

Query: 486 FGWIYVLEMALKIYSYGFENYWRDGQNRFDFLVTWVIVIGETITLASPNGQTFLSNGEWI 545
            GWIYVLEMALK++++GF+NYWRD  NRFDF +TW+IVIGET T  +P+  +FLSNGEWI
Sbjct: 475 LGWIYVLEMALKVFAFGFKNYWRDDSNRFDFFITWIIVIGETATFVAPSSLSFLSNGEWI 534

Query: 546 RYLLLARMLRLIRLLMHVQQYRGFVATFLTLIPSLMPYLGTIFCVQCIYCSLGVQIFGGI 605
           RYLLLARMLRLIRLLM V+QYR F+ATFL LIPSLMPYLGTIFCV CIYCSLGVQIFGGI
Sbjct: 535 RYLLLARMLRLIRLLMRVKQYRAFIATFLNLIPSLMPYLGTIFCVLCIYCSLGVQIFGGI 594

Query: 606 VNAGNAKLEETDLADDDYLLFNFNDYPNGMVTLFNLLVMGNWQVWMQSYKELTGTAWTLA 665
           VN GN+ LE TDL + DYLLFNFNDYPNGMVTLFNLLVM NWQVWMQSYK+LTGT+WTL 
Sbjct: 595 VNNGNSNLEGTDLEESDYLLFNFNDYPNGMVTLFNLLVMNNWQVWMQSYKDLTGTSWTLV 654

Query: 666 YFVSFYLITVLLLLNLVIAFVLEAFFAEMELESSEKCEEEDKDGEPRERRRRVGTKTRSQ 725
           YF+S+YL+TVLLLLNLV+AFVLEAFFAEM+LE SE C E+ K+   ++ RR   ++ RSQ
Sbjct: 655 YFISYYLLTVLLLLNLVVAFVLEAFFAEMDLEKSENCGEDGKEAGEKQ-RRYTRSRIRSQ 713

Query: 726 KVDVLLHHMLSAELQKS 742
           +VD+LLHHMLSAEL ++
Sbjct: 714 RVDILLHHMLSAELNQT 730

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18412295|ref|NP_567258.1| two pore calcium channel protein 1 [Arabidopsis thaliana] gi|75166464|sp|Q94KI8.1|TPC1_ARATH RecName: Full=Two pore calcium channel protein 1; AltName: Full=Calcium channel protein 1; Short=AtCCH1; AltName: Full=Fatty acid oxygenation up-regulated protein 2; AltName: Full=Voltage-dependent calcium channel protein TPC1; Short=AtTPC1 gi|13786069|gb|AAK39554.1|AF360372_1 putative calcium channel [Arabidopsis thaliana] gi|222422931|dbj|BAH19452.1| AT4G03560 [Arabidopsis thaliana] gi|332656937|gb|AEE82337.1| two pore calcium channel protein 1 [Arabidopsis thaliana]

Back alignment and taxonomy information

>gi\|449438094\|ref\|XP_004136825.1\| PREDICTED: two pore calcium channel protein 1-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|14041819\|dbj\|BAB55460.1\| two-pore calcium channel [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|255553747\|ref\|XP_002517914.1\| Voltage-dependent L-type calcium channel, putative [Ricinus communis] gi\|223542896\|gb\|EEF44432.1\| Voltage-dependent L-type calcium channel, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|75326539\|sp\|Q75VR1.1\|TCP1A_TOBAC RecName: Full=Two pore calcium channel protein 1A; AltName: Full=Voltage-dependent calcium channel protein TPC1A; Short=NtTPC1A gi\|46275792\|dbj\|BAD15099.1\| two-pore calcium channel [Nicotiana tabacum]	Back alignment and taxonomy information

>gi\|224121708\|ref\|XP_002330633.1\| predicted protein [Populus trichocarpa] gi\|222872237\|gb\|EEF09368.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|297813953\|ref\|XP_002874860.1\| two-pore channel 1 [Arabidopsis lyrata subsp. lyrata] gi\|297320697\|gb\|EFH51119.1\| two-pore channel 1 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|75326538\|sp\|Q75VR0.1\|TPC1B_TOBAC RecName: Full=Two pore calcium channel protein 1B; AltName: Full=Voltage-dependent calcium channel protein TPC1B; Short=NtTPC1B gi\|46275794\|dbj\|BAD15100.1\| two-pore calcium channel [Nicotiana tabacum]	Back alignment and taxonomy information

>gi\|4206210\|gb\|AAD11598.1\| putative calcium channel [Arabidopsis thaliana] gi\|4263043\|gb\|AAD15312.1\| putative calcium channel [Arabidopsis thaliana] gi\|7270679\|emb\|CAB77841.1\| putative calcium channel [Arabidopsis thaliana]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		745
TAIR\|locus:2128716		733	TPC1 "two-pore channel 1" [Ara	0.953	0.968	0.623	1.4e-236
UNIPROTKB\|J9JHA5		773	TPC3 "Uncharacterized protein"	0.700	0.675	0.246	1.8e-35
UNIPROTKB\|C4IXV8		768	TPC3 "Uncharacterized protein"	0.697	0.677	0.237	6.8e-35
UNIPROTKB\|E2QYG4		751	TPCN2 "Uncharacterized protein	0.751	0.745	0.245	1.8e-31
UNIPROTKB\|Q8NHX9		752	TPCN2 "Two pore calcium channe	0.696	0.690	0.243	4.2e-29
UNIPROTKB\|F1NSV9		742	TPCN2 "Uncharacterized protein	0.598	0.601	0.234	2.3e-28
UNIPROTKB\|E1BIB9		751	TPCN2 "Uncharacterized protein	0.699	0.693	0.241	5.6e-28
UNIPROTKB\|F1RY74		502	TPCN2 "Uncharacterized protein	0.527	0.782	0.266	2.9e-27
RGD\|1311779		730	Tpcn2 "two pore segment channe	0.621	0.634	0.246	4.2e-26
UNIPROTKB\|F1MSJ0		793	TPCN1 "Uncharacterized protein	0.677	0.636	0.231	3.9e-25

TAIR\|locus:2128716 TPC1 "two-pore channel 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 2281 (808.0 bits), Expect = 1.4e-236, P = 1.4e-236
 Identities = 445/714 (62%), Positives = 510/714 (71%)

Query:    33 RRTDAITRGSPYQKAAALVDLAEDGIGLPEEILDRSSFESSAXXXXXXXXXXXXWSLNYF 92
             RR++AIT G+P+QKAAALVDLAEDGIGLP EILD+SSF  SA            WSLNYF
Sbjct:    20 RRSEAITHGTPFQKAAALVDLAEDGIGLPVEILDQSSFGESARYYFIFTRLDLIWSLNYF 79

Query:    93 ALIVLNFLEKPLWCAKTGVGTYSCYDREYYYLGQLPYLTGWESLVYEGITLVILIIHTFF 152
             AL+ LNF E+PLWC K      SC DR+YYYLG+LPYLT  ES++YE ITL IL++HTFF
Sbjct:    80 ALLFLNFFEQPLWCEKNPKP--SCKDRDYYYLGELPYLTNAESIIYEVITLAILLVHTFF 137

Query:   153 PITYEGSPIFWKSTYTRLKVLCLLILVADFLVYGLYLSPIAFNFLPLRIAPYIRVVFFIL 212
             PI+YEGS IFW S    +KV C++IL  D LV  LYLSP+AF+FLP RIAPY+RV+ FIL
Sbjct:   138 PISYEGSRIFWTSRLNLVKVACVVILFVDVLVDFLYLSPLAFDFLPFRIAPYVRVIIFIL 197

Query:   213 NIRQLRDTLFVLAGMLGTYLNVXXXXXXXXXXXXXXXYVIFEDTVQGNMVFTSFGTTLYQ 272
             +IR+LRDTL +L+GMLGTYLN+               +V+FEDT QG  VFTS+G TLYQ
Sbjct:   198 SIRELRDTLVLLSGMLGTYLNILALWMLFLLFASWIAFVMFEDTQQGLTVFTSYGATLYQ 257

Query:   273 MFVLFTTSNNPDVWIPAYKASRWYCLFFVLYVLIGVYFVTNLILAVVYDSFKSQLAKQVS 332
             MF+LFTTSNNPDVWIPAYK+SRW  +FFVLYVLIGVYFVTNLILAVVYDSFK QLAKQVS
Sbjct:   258 MFILFTTSNNPDVWIPAYKSSRWSSVFFVLYVLIGVYFVTNLILAVVYDSFKEQLAKQVS 317

Query:   333 EMDRMRRRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISRXXXXXXXXXXXX 392
              MD+M+RR L KAF LID+   G ++K QCIKLFE+L  YRTLP IS+            
Sbjct:   318 GMDQMKRRMLEKAFGLIDSDKNGEIDKNQCIKLFEQLTNYRTLPKISKEEFGLIFDELDD 377

Query:   393 THDFKINLDEFADLCNAIALRFQKEDVPSCFENLPSIYHSPFSEKLKAFIRSTKFGYMXX 452
             T DFKIN DEFADLC AIALRFQKE+VPS FE+ P IYHS  S++L+AF+RS  FGY   
Sbjct:   378 TRDFKINKDEFADLCQAIALRFQKEEVPSLFEHFPQIYHSALSQQLRAFVRSPNFGYAIS 437

Query:   453 XXXXXXXXXXXXETTLDIQESSLQSVWQEVEFVFGWIYVLEMALKIYSYGFENYWRDGQN 512
                         ETTLDI+ESS Q  WQ  EFVFGWIYVLEMALKIY+YGFENYWR+G N
Sbjct:   438 FILIINFIAVVVETTLDIEESSAQKPWQVAEFVFGWIYVLEMALKIYTYGFENYWREGAN 497

Query:   513 RFDFLVTWVIVIGETITLASPNGQTFLSNGEWIXXXXXXXXXXXXXXXMHVQQYRGFVAT 572
             RFDFLVTWVIVIGET T  +P+  TF SNGEWI               M+VQ+YR F+AT
Sbjct:   498 RFDFLVTWVIVIGETATFITPDENTFFSNGEWIRYLLLARMLRLIRLLMNVQRYRAFIAT 557

Query:   573 FLTLIPSLMPYLGTIFCVQCIYCSLGVQIFGGIVNAGNAKLEETDLADDDYLLFNFNDYP 632
             F+TLIPSLMPYLGTIFCV CIYCS+GVQ+FGG+VNAGN KL ET+LA+DDYLLFNFNDYP
Sbjct:   558 FITLIPSLMPYLGTIFCVLCIYCSIGVQVFGGLVNAGNKKLFETELAEDDYLLFNFNDYP 617

Query:   633 NGMVTLFNLLVMGNWQVWMQSYKELTGTAWTLAYFVSFYXXXXXXXXXXXXXXXXEAFFA 692
             NGMVTLFNLLVMGNWQVWM+SYK+LTGT W++ YFVSFY                EAFF 
Sbjct:   618 NGMVTLFNLLVMGNWQVWMESYKDLTGTWWSITYFVSFYVITILLLLNLVVAFVLEAFFT 677

Query:   693 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSQKVDVLLHHMLSAELQK-SCDS 745
                                            SQ+VD LLHHML  EL K  C +
Sbjct:   678 ELDLEEEEKCQGQDSQEKRNRRRSAGSKSR-SQRVDTLLHHMLGDELSKPECST 730

GO:0005216 "ion channel activity" evidence=IEA

GO:0005262 "calcium channel activity" evidence=IGI;ISS;IMP

GO:0005509 "calcium ion binding" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005245 "voltage-gated calcium channel activity" evidence=IGI;ISS

GO:0005886 "plasma membrane" evidence=TAS

GO:0006816 "calcium ion transport" evidence=IC;RCA;IMP

GO:0005773 "vacuole" evidence=IDA

GO:0000325 "plant-type vacuole" evidence=IDA

GO:0009845 "seed germination" evidence=IMP

GO:0010119 "regulation of stomatal movement" evidence=IMP

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0080141 "regulation of jasmonic acid biosynthetic process" evidence=IMP

GO:0019722 "calcium-mediated signaling" evidence=IMP

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0007033 "vacuole organization" evidence=RCA

GO:0009556 "microsporogenesis" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0052543 "callose deposition in cell wall" evidence=RCA

UNIPROTKB\|J9JHA5 TPC3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|C4IXV8 TPC3 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|E2QYG4 TPCN2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|Q8NHX9 TPCN2 "Two pore calcium channel protein 2" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|F1NSV9 TPCN2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|E1BIB9 TPCN2 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|F1RY74 TPCN2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

RGD\|1311779 Tpcn2 "two pore segment channel 2" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|F1MSJ0 TPCN1 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q75VR0	TPC1B_TOBAC	No assigned EC number	0.7173	0.9825	0.9959	N/A	no
Q75VR1	TPC1A_TOBAC	No assigned EC number	0.7169	0.9812	0.9945	N/A	no
Q6YLX9	TPC1_WHEAT	No assigned EC number	0.6107	0.9852	0.9892	N/A	no
Q5QM84	TPC1_ORYSJ	No assigned EC number	0.6474	0.9436	0.9286	yes	no
Q94KI8	TPC1_ARATH	No assigned EC number	0.7390	0.9476	0.9631	yes	no
Q6S5H8	TPC1_HORVU	No assigned EC number	0.6107	0.9852	0.9892	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	ATTPC1	ATTPC1 (TWO-PORE CHANNEL 1); calcium channel/ voltage-gated calcium channel; Encodes a depolarization-activated Ca(2+) channel. Anti-sense experiments with this gene as well as Sucrose-H(+) symporters and complementation of yeast sucrose uptake mutant cch1 suggest that this protein mediates a voltage-activated Ca(2+ )influx. Mutants lack detectable SV channel activity suggesting TPC1 is essential component of the SV channel. Patch clamp analysis of loss of function mutation indicates TPC1 does not affect Ca2+ signaling in response to abiotic and biotic stress. ; Functions as a voltage- [...] (733 aa)
		(Arabidopsis thaliana)
Predicted Functional Partners:
	ATCNGC11	ATCNGC11 (CYCLIC NUCLEOTIDE-GATED CHANNELS); calmodulin binding / cation channel/ cyclic nucleo [...] (621 aa)			•	0.649
	ATPCS2	ATPCS2 (phytochelatin synthase 2); glutathione gamma-glutamylcysteinyltransferase; Encodes a pr [...] (452 aa)			•	0.623
	CER5	CER5 (ECERIFERUM 5); ATPase, coupled to transmembrane movement of substances; Encodes an ABC tr [...] (687 aa)		•	•	0.616
	AT2G31800	ankyrin protein kinase, putative; ankyrin protein kinase, putative; FUNCTIONS IN- protein serin [...] (476 aa)			•	0.534
	ATKCO1	ATKCO1; calcium-activated potassium channel/ ion channel/ outward rectifier potassium channel; [...] (363 aa)			•	0.534
	AT3G50770	calmodulin-related protein, putative; calmodulin-related protein, putative; FUNCTIONS IN- calci [...] (205 aa)			•	0.508
	AT3G13330	binding; binding; FUNCTIONS IN- binding; LOCATED IN- cellular_component unknown; EXPRESSED IN- [...] (1781 aa)			•	0.467
	AT4G02480	AAA-type ATPase family protein; AAA-type ATPase family protein; FUNCTIONS IN- nucleoside-tripho [...] (1265 aa)	•			0.458
	CAX1	CAX1 (cation exchanger 1); calcium ion transmembrane transporter/ calcium-cation antiporter/ ca [...] (475 aa)			•	0.439
	AOS	AOS (ALLENE OXIDE SYNTHASE); allene oxide synthase/ hydro-lyase/ oxygen binding; Encodes a memb [...] (518 aa)			•	0.435

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		745
pfam00520		194	pfam00520, Ion_trans, Ion transport protein	5e-24
pfam00520		194	pfam00520, Ion_trans, Ion transport protein	7e-12
pfam13499		60	pfam13499, EF_hand_5, EF-hand domain pair	7e-05
cd00051		63	cd00051, EFh, EF-hand, calcium binding motif; A di	0.001
PLN03223		1634	PLN03223, PLN03223, Polycystin cation channel prot	0.002

>gnl\|CDD\|215968 pfam00520, Ion_trans, Ion transport protein	Back alignment and domain information

 Score =  100 bits (250), Expect = 5e-24
 Identities = 58/206 (28%), Positives = 91/206 (44%), Gaps = 14/206 (6%)

Query: 482 VEFVFGWIYVLEMALKIYSYGFE-NYWRDGQNRFDFLVTWVIVIGETITLASPNGQTFLS 540
           +++VF  I+ LEM LK  + GF+  Y+R   N  DFLV    ++   + L          
Sbjct: 2   LDYVFTVIFTLEMLLKFIALGFKRKYFRSPWNILDFLVVLPSLVSLILFL-------LGE 54

Query: 541 NGEWIRYLLLARMLRLIRLLMHVQQYRGFVATFLTLIPSLMPYLGTIFCVQCIYCSLGVQ 600
           +   +R L L R+LRL+RLL      R  + +    + SL+  L  +  +  I+  +GVQ
Sbjct: 55  DSGLLRVLRLLRLLRLLRLLRRFPGLRTLLQSLGRSLKSLLNLLLLLLLLLFIFAIIGVQ 114

Query: 601 IFGGIVNAGNAKLEETDLADDDYLLFNFNDYPNGMVTLFNLLVMGNWQVWMQSYKELTGT 660
           +FG     G          +      NF+ Y   ++ LF  L    W   M       GT
Sbjct: 115 LFG-----GELDKCCDKNENPINGNSNFDSYGEALLWLFRTLTTEGWGDVMYDTLV-PGT 168

Query: 661 AWTLAYFVSFYLITVLLLLNLVIAFV 686
                +FV F ++  +LLLNL+I  +
Sbjct: 169 VLGKIFFVIFIILGGVLLLNLLIGVI 194

This family contains Sodium, Potassium, Calcium ion channels. This family is 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some sub-families (e.g. Na channels) the domain is repeated four times, whereas in others (e.g. K channels) the protein forms as a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not the Pfam family due to it lacking the first four helices. Length = 194

>gnl\|CDD\|215968 pfam00520, Ion_trans, Ion transport protein	Back alignment and domain information

>gnl\|CDD\|222177 pfam13499, EF_hand_5, EF-hand domain pair	Back alignment and domain information

>gnl\|CDD\|238008 cd00051, EFh, EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands	Back alignment and domain information

>gnl\|CDD\|215637 PLN03223, PLN03223, Polycystin cation channel protein; Provisional	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		745
KOG2301		1592	consensus Voltage-gated Ca2+ channels, alpha1 subu	100.0
KOG2302		1956	consensus T-type voltage-gated Ca2+ channel, pore-	100.0
KOG2302		1956	consensus T-type voltage-gated Ca2+ channel, pore-	100.0
KOG2301		1592	consensus Voltage-gated Ca2+ channels, alpha1 subu	100.0
KOG3713		477	consensus Voltage-gated K+ channel KCNB/KCNC [Inor	99.9
KOG3713		477	consensus Voltage-gated K+ channel KCNB/KCNC [Inor	99.88
PF00520		200	Ion_trans: Ion transport protein calcium channel s	99.87
PF00520		200	Ion_trans: Ion transport protein calcium channel s	99.86
KOG1545		507	consensus Voltage-gated shaker-like K+ channel KCN	99.82
PLN03223		1634	Polycystin cation channel protein; Provisional	99.81
KOG1545		507	consensus Voltage-gated shaker-like K+ channel KCN	99.78
PLN03223		1634	Polycystin cation channel protein; Provisional	99.77
KOG4390		632	consensus Voltage-gated A-type K+ channel KCND [In	99.5
KOG3599		798	consensus Ca2+-modulated nonselective cation chann	99.49
PF08016		425	PKD_channel: Polycystin cation channel; InterPro:	99.49
KOG4390		632	consensus Voltage-gated A-type K+ channel KCND [In	99.48
PF08016		425	PKD_channel: Polycystin cation channel; InterPro:	99.44
KOG3599		798	consensus Ca2+-modulated nonselective cation chann	99.35
TIGR00870		743	trp transient-receptor-potential calcium channel p	99.16
KOG1419		654	consensus Voltage-gated K+ channel KCNQ [Inorganic	99.06
TIGR00870		743	trp transient-receptor-potential calcium channel p	99.03
KOG1419		654	consensus Voltage-gated K+ channel KCNQ [Inorganic	98.91
KOG3609		822	consensus Receptor-activated Ca2+-permeable cation	98.58
KOG3609		822	consensus Receptor-activated Ca2+-permeable cation	98.27
PLN03192		823	Voltage-dependent potassium channel; Provisional	98.21
PLN03192		823	Voltage-dependent potassium channel; Provisional	98.17
KOG0510		929	consensus Ankyrin repeat protein [General function	97.85
KOG0510		929	consensus Ankyrin repeat protein [General function	97.28
KOG3614		1381	consensus Ca2+/Mg2+-permeable cation channels (LTR	97.22
KOG3614		1381	consensus Ca2+/Mg2+-permeable cation channels (LTR	97.17
KOG0498		727	consensus K+-channel ERG and related proteins, con	97.07
KOG3676		782	consensus Ca2+-permeable cation channel OSM-9 and	97.04
KOG0498		727	consensus K+-channel ERG and related proteins, con	96.95
KOG3733		566	consensus Mucolipidin and related proteins (TRML s	96.89
KOG3533		2706	consensus Inositol 1,4,5-trisphosphate receptor [S	96.46
KOG3676		782	consensus Ca2+-permeable cation channel OSM-9 and	96.39
KOG3533		2706	consensus Inositol 1,4,5-trisphosphate receptor [S	96.34
PRK10537		393	voltage-gated potassium channel; Provisional	95.89
KOG3733		566	consensus Mucolipidin and related proteins (TRML s	95.78
KOG1420		1103	consensus Ca2+-activated K+ channel Slowpoke, alph	95.3
PF13499		66	EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A	93.78
cd00213		88	S-100 S-100: S-100 domain, which represents the la	93.03
cd05022		89	S-100A13 S-100A13: S-100A13 domain found in protei	92.51
PRK10537		393	voltage-gated potassium channel; Provisional	92.3
KOG1420		1103	consensus Ca2+-activated K+ channel Slowpoke, alph	91.59
smart00027		96	EH Eps15 homology domain. Pair of EF hand motifs t	91.37
PF07885		79	Ion_trans_2: Ion channel; InterPro: IPR013099 This	90.99
cd05027		88	S-100B S-100B: S-100B domain found in proteins sim	90.2
COG5126		160	FRQ1 Ca2+-binding protein (EF-Hand superfamily) [S	89.18
cd05026		93	S-100Z S-100Z: S-100Z domain found in proteins sim	88.76
cd05031		94	S-100A10_like S-100A10_like: S-100A10 domain found	88.71
cd05025		92	S-100A1 S-100A1: S-100A1 domain found in proteins	88.61
cd00052		67	EH Eps15 homology domain; found in proteins implic	88.51
KOG0501		971	consensus K+-channel KCNQ [Inorganic ion transport	86.3
KOG0500		536	consensus Cyclic nucleotide-gated cation channel C	86.08
cd05023		89	S-100A11 S-100A11: S-100A11 domain found in protei	85.38
KOG0027		151	consensus Calmodulin and related proteins (EF-Hand	84.46
cd00051		63	EFh EF-hand, calcium binding motif; A diverse supe	84.15
KOG0499		815	consensus Cyclic nucleotide-gated cation channel C	83.98
KOG0027		151	consensus Calmodulin and related proteins (EF-Hand	83.76
KOG0028		172	consensus Ca2+-binding protein (centrin/caltractin	82.8
PTZ00183		158	centrin; Provisional	81.95

>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]	Back alignment and domain information

Probab=100.00  E-value=2.2e-68  Score=640.91  Aligned_cols=474  Identities=24%  Similarity=0.415  Sum_probs=408.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCchhhhhccccceehhhHHHHHHHHHHHHhhcCCcccccchhhhhhhhHHHHHhhccH
Q 004548          136 LVYEGITLVILIIHTFFPITYEGSPIFWKSTYTRLKVLCLLILVADFLVYGLYLSPIAFNFLPLRIAPYIRVVFFILNIR  215 (745)
Q Consensus       136 ~~~e~~~~~~f~~E~~lk~~~~g~~~y~~~~~n~~d~~iiv~~~i~~i~~~~~~~~~~~~~~~lr~~r~lR~lrli~~~~  215 (745)
                      -+.|.+|+.+|++|+++|+++.|...|++|.||++|++++++++++++....    .....+.+|.+|+|||||.++.++
T Consensus       875 ~y~D~~Ft~iFt~Em~lK~ia~Gf~~y~rn~w~~lDf~Vv~vslisl~~~~~----~~~~ik~lr~lRaLRPLR~i~r~~  950 (1592)
T KOG2301|consen  875 EYADYIFTYIFTFEMLLKWIAYGFFFYFRNAWNWLDFVVVIVSLISLIASLK----ILSLIKSLRILRALRPLRALSRFP  950 (1592)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHhhhhHHHhhhHHHHHHHhhh----hhhHHHHHHHHHHHHHHHHHHHcc
Confidence            3469999999999999999999998899999999999999999999998865    123788999999999999999999


Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcccC-----------------------------------cccc
Q 004548          216 QLRDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAYVIFEDT-----------------------------------VQGN  260 (745)
Q Consensus       216 ~lr~~~~~l~~~~~~i~~v~~l~~~~~~~fai~g~~lF~~~-----------------------------------~~~~  260 (745)
                      ++|.++.++.+++|+|++++++.++++++||++|+++|+|.                                   .+.+
T Consensus       951 ~mr~Vv~~l~~a~~~I~nv~lV~li~~fiFai~gv~lF~Gkf~~C~d~~~~~~~~~~~~y~~~~~~~~~~~~~~~w~n~~ 1030 (1592)
T KOG2301|consen  951 GMRVVVLALFGGLPEIFNVLLVCLIFWFIFAIMGVQLFAGKFYACNDPTVGSRLTRTEVYNKYECESLPRAPRRWWNNRK 1030 (1592)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCceeccCCCcchhhhhhhhhccCchhhhhhccceEEeccc
Confidence            99999999999999999999999999999999999999853                                   1245


Q ss_pred             ccccchHHHHHHHHHHHhcCCChhhhHH-----------hhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004548          261 MVFTSFGTTLYQMFVLFTTSNNPDVWIP-----------AYKASRWYCLFFVLYVLIGVYFVTNLILAVVYDSFKSQLAK  329 (745)
Q Consensus       261 ~~F~~~~~s~~~lf~~~t~~~w~dv~~~-----------~~~~~~~~~ifFi~~~~l~~~~~lnl~iaVi~~~f~~~~~~  329 (745)
                      .||||++++++++|+..|.+||+|+|+.           .+..+.+.++||++|++++.|+.+|+|+|||++||+++.++
T Consensus      1031 ~nfDnv~~a~laLf~v~tf~GW~~i~~~~ids~~~~~~p~~~~~~~~~~ffvifii~~~ff~lnlFvgvII~nf~~q~~~ 1110 (1592)
T KOG2301|consen 1031 FNFDNVGNAMLALFQVATFKGWPDIMYAAIDSRGVNAQPILESNLYMYLFFVIFIIIGSFFTLNLFVGVIIDNFNQQKGK 1110 (1592)
T ss_pred             cccccHHHHHHHHHHHHhcCCHHHHHHHHhhhhccCcCCcccccccceeehhhhhhHHhhhheeeeEEEEEechhhhchh
Confidence            6799999999999999999999999864           44566788999999999999999999999999999999887


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHhhhccCCCCCCHHHHHHHhhhcccCCCCCCChhhhHHHHHH
Q 004548          330 QVSEMDRMRRRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNA  409 (745)
Q Consensus       330 ~~~~~~~~r~~~l~~af~~l~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~d~~~~~~~~~~ef~~l~~~  409 (745)
                      +..+                      +.+.+|...+ ...++..                                    
T Consensus      1111 ~~~~----------------------~~~~eq~~~~-~~~~~l~------------------------------------ 1131 (1592)
T KOG2301|consen 1111 AGGT----------------------FMTEEQKKRL-NAAKKLG------------------------------------ 1131 (1592)
T ss_pred             hhhh----------------------hhhHHHHHHH-HHHHHhc------------------------------------
Confidence            6552                      1111111111 0000000                                    


Q ss_pred             HHhhhcccCCccccccCCcccCcHHHHHHHhccccchHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHH
Q 004548          410 IALRFQKEDVPSCFENLPSIYHSPFSEKLKAFIRSTKFGYMISIILIVNLVAVIVETTLDIQESSLQSVWQEVEFVFGWI  489 (745)
Q Consensus       410 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~iv~~~~f~~~i~~iilln~i~l~~~~~~~~~~~~~~~~~~~ie~~f~~i  489 (745)
                        .++.+++.|        ...++.+.+++.++.++.|++.+..++++|.+.++++++.  ++......+.+++.+|+.+
T Consensus      1132 --sk~~~r~ip--------r~~~~~q~~~~~~v~~~~F~~~i~~li~ln~i~l~~~~~~--qs~~~~~~l~~in~vft~~ 1199 (1592)
T KOG2301|consen 1132 --SKPPQRPIP--------RPRNKLQGLVFDLVTSQAFDYLIMLLIFLNTIIMMVETYD--QSDTYTAILTILNAVFIVL 1199 (1592)
T ss_pred             --CCCCCCCCC--------CCcchhhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhcc--chHHHHHHHHHHHHHHHHH
Confidence              011111111        1235678999999999999999999999999999999873  4445667889999999999


Q ss_pred             HHHHHHHHHhhccchhhhcccccchhhHHHHHHHHHHHHhhcCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 004548          490 YVLEMALKIYSYGFENYWRDGQNRFDFLVTWVIVIGETITLASPNGQTFLSNGEWIRYLLLARMLRLIRLLMHVQQYRGF  569 (745)
Q Consensus       490 f~iE~~lKi~a~G~~~y~~~~wn~fD~ivvi~~~i~~i~~~~~~~~~~~~~~~~~lr~l~~~RvlR~lrl~~~~~~lr~l  569 (745)
                      |++|+++|++|.|++.||+++||+||++++++++++.+++.....   +.++....++.|++|+.|++|+++..+++|.+
T Consensus      1200 Ft~E~vLKiiA~~~~~yf~~~WN~FDfvvvIlSIv~~~ls~~~~~---~~~~~~~~~~~rl~rV~R~l~Li~~~~~ir~L 1276 (1592)
T KOG2301|consen 1200 FTIECILKVIALRFRGYFTSAWNVFDFVVTILSIVGIVLSEAVEK---YESSPTLLRFLRLFRVGRFLRLIPQAKTIRTL 1276 (1592)
T ss_pred             HHHHHHHHHHHhhhhHhccccchheEeeeeeHhHHHHHHHHHHHh---hccchhhHHHHHHHHHHHHHHhccccchhHHH
Confidence            999999999999999999999999999999999999988876643   22345678999999999999999999999999


Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCcCCccccccccccccCChhhHHHHHHHHhhccCHHH
Q 004548          570 VATFLTLIPSLMPYLGTIFCVQCIYCSLGVQIFGGIVNAGNAKLEETDLADDDYLLFNFNDYPNGMVTLFNLLVMGNWQV  649 (745)
Q Consensus       570 ~~tl~~~~~~l~~~~~ll~~~~~ifAi~G~~lF~g~~~~~~~~~~~~~~~~~~y~~~nF~~f~~a~~tLf~i~t~~~W~~  649 (745)
                      ..|++.|+|++.++++++++++++||++||++||....+        +.+    .++||.|+++|++.||+++|+|||++
T Consensus      1277 L~t~~~Sl~al~~i~lLl~ll~fiYAi~Gmq~Fg~Vkl~--------~i~----~~~NF~tf~~a~i~LFr~~Tge~W~~ 1344 (1592)
T KOG2301|consen 1277 LLTLMMSLPALFFIILLLFLLFFIYAIIGMQLFGYVKLG--------GIN----DHNNFRTFPNSMVVLFRCATGEGWND 1344 (1592)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhheecc--------ccC----CCcccccchhheeeeeehhhhhhHHH
Confidence            999999999999999999999999999999999998875        111    15899999999999999999999999


Q ss_pred             HHHHHHh--------------hhC-CcceeeehhhHHHHHHHHHHHHHHHHHHHHHHHhHhhhhh
Q 004548          650 WMQSYKE--------------LTG-TAWTLAYFVSFYLITVLLLLNLVIAFVLEAFFAEMELESS  699 (745)
Q Consensus       650 im~~~~~--------------~~~-~~~~~~yFi~~~ii~~~i~lnLfvavi~e~F~~~~~~~~~  699 (745)
                      +|.+++.              .|| ..++.+||++|++++.++++|||||+|+|||+..+++.++
T Consensus      1345 im~~~l~s~p~Cdp~~~~~~~dCGn~~~Ai~YF~Sf~iIs~~IvvNLfVAVImeNFs~~t~~~s~ 1409 (1592)
T KOG2301|consen 1345 IMDDCLNSKPFCDPDDGNNGTDCGNPTVAIIYFVSWILISSYIVVNLFVAVILENFSYATEDSSE 1409 (1592)
T ss_pred             HHHHHhcCCCCCCCCCCCcccccCCCCcceehhhHHHHHHHHHHHHHHHHHHHhhhhhhcccccc
Confidence            9999765              477 5889999999999999999999999999999999988774

>KOG2302 consensus T-type voltage-gated Ca2+ channel, pore-forming alpha1I subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]	Back alignment and domain information

>KOG2302 consensus T-type voltage-gated Ca2+ channel, pore-forming alpha1I subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]	Back alignment and domain information

>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]	Back alignment and domain information

>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]	Back alignment and domain information

>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]	Back alignment and domain information

>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins	Back alignment and domain information

>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins	Back alignment and domain information

>KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism]	Back alignment and domain information

>PLN03223 Polycystin cation channel protein; Provisional	Back alignment and domain information

>KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism]	Back alignment and domain information

>PLN03223 Polycystin cation channel protein; Provisional	Back alignment and domain information

>KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism]	Back alignment and domain information

>KOG3599 consensus Ca2+-modulated nonselective cation channel polycystin [Inorganic ion transport and metabolism; Signal transduction mechanisms]	Back alignment and domain information

>PF08016 PKD_channel: Polycystin cation channel; InterPro: IPR013122 Polycystic kidney diseases (PKD) are disorders characterised by large numbers of cysts distributed throughout grossly-enlarged kidneys	Back alignment and domain information

>KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism]	Back alignment and domain information

>PF08016 PKD_channel: Polycystin cation channel; InterPro: IPR013122 Polycystic kidney diseases (PKD) are disorders characterised by large numbers of cysts distributed throughout grossly-enlarged kidneys	Back alignment and domain information

>KOG3599 consensus Ca2+-modulated nonselective cation channel polycystin [Inorganic ion transport and metabolism; Signal transduction mechanisms]	Back alignment and domain information

>TIGR00870 trp transient-receptor-potential calcium channel protein	Back alignment and domain information

>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism]	Back alignment and domain information

>TIGR00870 trp transient-receptor-potential calcium channel protein	Back alignment and domain information

>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism]	Back alignment and domain information

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]	Back alignment and domain information

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]	Back alignment and domain information

>PLN03192 Voltage-dependent potassium channel; Provisional	Back alignment and domain information

>PLN03192 Voltage-dependent potassium channel; Provisional	Back alignment and domain information

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]	Back alignment and domain information

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]	Back alignment and domain information

>KOG3614 consensus Ca2+/Mg2+-permeable cation channels (LTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]	Back alignment and domain information

>KOG3614 consensus Ca2+/Mg2+-permeable cation channels (LTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]	Back alignment and domain information

>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]	Back alignment and domain information

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]	Back alignment and domain information

>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]	Back alignment and domain information

>KOG3733 consensus Mucolipidin and related proteins (TRML subfamily of transient receptor potential proteins) [Inorganic ion transport and metabolism]	Back alignment and domain information

>KOG3533 consensus Inositol 1,4,5-trisphosphate receptor [Signal transduction mechanisms]	Back alignment and domain information

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]	Back alignment and domain information

>KOG3533 consensus Inositol 1,4,5-trisphosphate receptor [Signal transduction mechanisms]	Back alignment and domain information

>PRK10537 voltage-gated potassium channel; Provisional	Back alignment and domain information

>KOG3733 consensus Mucolipidin and related proteins (TRML subfamily of transient receptor potential proteins) [Inorganic ion transport and metabolism]	Back alignment and domain information

>KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]	Back alignment and domain information

>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E	Back alignment and domain information

>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif	Back alignment and domain information

>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13	Back alignment and domain information

>PRK10537 voltage-gated potassium channel; Provisional	Back alignment and domain information

>KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]	Back alignment and domain information

>smart00027 EH Eps15 homology domain	Back alignment and domain information

>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria []	Back alignment and domain information

>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B	Back alignment and domain information

>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]	Back alignment and domain information

>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z	Back alignment and domain information

>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10	Back alignment and domain information

>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1	Back alignment and domain information

>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction	Back alignment and domain information

>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]	Back alignment and domain information

>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]	Back alignment and domain information

>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11	Back alignment and domain information

>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]	Back alignment and domain information

>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands	Back alignment and domain information

>KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms]	Back alignment and domain information

>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]	Back alignment and domain information

>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PTZ00183 centrin; Provisional	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		745
3rvy_A		285	ION transport protein; tetrameric ION channel, vol	1e-34
3rvy_A		285	ION transport protein; tetrameric ION channel, vol	6e-13
4dxw_A		229	Navrh, ION transport protein; tetrameric, voltage-	2e-31
4dxw_A		229	Navrh, ION transport protein; tetrameric, voltage-	3e-12
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-07
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-05
1wlz_A		105	DJBP, CAP-binding protein complex interacting prot	4e-06
2pmy_A		91	RAS and EF-hand domain-containing protein; rasef,	3e-05
2kgr_A		111	Intersectin-1; structure, alternative splicing, ca	4e-04
2sas_A		185	Sarcoplasmic calcium-binding protein; 2.40A {Branc	7e-04
2be4_A		272	Hypothetical protein LOC449832; DR.36843, BC083168	8e-04

>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 3rw0_A* Length = 285	Back alignment and structure

 Score =  132 bits (334), Expect = 1e-34
 Identities = 49/286 (17%), Positives = 109/286 (38%), Gaps = 36/286 (12%)

Query: 430 YHSPFSEKLKAFIRSTKFGYMISIILIVNLVAVIVETTLDIQESSLQSVWQEVEFVFGWI 489
             S    ++   + S+ F   I  ++++N + + +ET+      S          +   I
Sbjct: 15  RGSHMYLRITNIVESSFFTKFIIYLIVLNGITMGLETS-KTFMQSFGVYTTLFNQIVITI 73

Query: 490 YVLEMALKIYSYGFENYWRDGQNRFDFLVTWVIVIGETITLASPNGQTFLSNGEWIRYLL 549
           + +E+ L+IY +   ++++D  + FDF     +V             + +        L 
Sbjct: 74  FTIEIILRIYVHRI-SFFKDPWSLFDF----FVVAI-----------SLVPTSSGFEILR 117

Query: 550 LARMLRLIRLLMHVQQYRGFVATFLTLIPSLMPYLGTIFCVQCIYCSLGVQIFGGIVNAG 609
           + R+LRL RL+  V Q R  V+  +++IP ++  +  +     I+  +  Q+FG      
Sbjct: 118 VLRVLRLFRLVTAVPQMRKIVSALISVIPGMLSVIALMTLFFYIFAIMATQLFGERFPE- 176

Query: 610 NAKLEETDLADDDYLLFNFNDYPNGMVTLFNLLVMGNWQVWMQSYKELTGTAWTLAYFVS 669
                             F        TLF ++ + +W + +     +    +   +F+ 
Sbjct: 177 -----------------WFGTLGESFYTLFQVMTLESWSMGI-VRPLMEVYPYAWVFFIP 218

Query: 670 FYLITVLLLLNLVIAFVLEAFFAEMELESSEKCEEEDKDGEPRERR 715
           F  +   +++NLV+A  ++A     + E     +E     +     
Sbjct: 219 FIFVVTFVMINLVVAICVDAMAILNQKEEQHIIDEVQSHEDNINNE 264

PyMOL of 3rvy

>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 3rw0_A* Length = 285	Back alignment and structure

>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114} Length = 229	Back alignment and structure

>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114} Length = 229	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1wlz_A DJBP, CAP-binding protein complex interacting protein 1 isoform A; EF-hand like, unknown function; 1.60A {Homo sapiens} SCOP: a.39.1.7 Length = 105	Back alignment and structure

>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens} Length = 91	Back alignment and structure

>2kgr_A Intersectin-1; structure, alternative splicing, calcium, cell junction, cell projection, coiled coil, endocytosis, membrane, phosphoprotein; NMR {Homo sapiens} Length = 111	Back alignment and structure

>2sas_A Sarcoplasmic calcium-binding protein; 2.40A {Branchiostoma lanceolatum} SCOP: a.39.1.5 Length = 185	Back alignment and structure

>2be4_A Hypothetical protein LOC449832; DR.36843, BC083168, calicium binding, EF-hand superfamily, S genomics, protein structure initiative, PSI; 2.10A {Danio rerio} PDB: 2q4u_A Length = 272	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		745
d1orsc_		132	f.14.1.1 (C:) Potassium channel KVAP {Archaeon Aer	1e-06
d1oqpa_		77	a.39.1.5 (A:) Caltractin (centrin 2) {Green algae	2e-06
d1rwya_		109	a.39.1.4 (A:) Parvalbumin {Rat (Rattus rattus) [Ta	4e-06
d2pvba_		107	a.39.1.4 (A:) Parvalbumin {Pike (Esox lucius) [Tax	6e-06
d1pvaa_		109	a.39.1.4 (A:) Parvalbumin {Pike (Esox lucius) [Tax	7e-06
d2opoa1		81	a.39.1.10 (A:6-86) Polcalcin Che a 3 {Pigweed (Che	8e-06
d5pala_		109	a.39.1.4 (A:) Parvalbumin {Leopard shark (Triakis	9e-06
d1rroa_		108	a.39.1.4 (A:) Oncomodulin {Rat (Rattus norvegicus)	3e-05
d2fcea1		61	a.39.1.5 (A:84-144) Calmodulin {Cow (Bos taurus) [	4e-05
d1fi5a_		81	a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus),	4e-05
d1c7va_		68	a.39.1.5 (A:) Calcium vector protein {Amphioxus (B	4e-05
d1s6ja_		87	a.39.1.5 (A:) Calcium-dependent protein kinase sk5	1e-04
d1f54a_		77	a.39.1.5 (A:) Calmodulin {Baker's yeast (Saccharom	1e-04
d1topa_		162	a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus)	2e-04
d1fw4a_		65	a.39.1.5 (A:) Calmodulin {Cow (Bos taurus) [TaxId:	2e-04
d2obha1		141	a.39.1.5 (A:26-166) Calmodulin {Human (Homo sapien	2e-04
d1ij5a_		321	a.39.1.9 (A:) Cbp40 (plasmodial specific CaII-bind	2e-04
d2pq3a1		73	a.39.1.5 (A:3-75) Calmodulin {Rattus norvegicus [T	2e-04
d1avsa_		81	a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus)	5e-04
d1dtla_		156	a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus)	5e-04
d1zfsa1		93	a.39.1.2 (A:1-93) Calcyclin (S100) {Rat (Rattus no	0.002
d1tiza_		67	a.39.1.5 (A:) Calmodulin-related protein T21P5.17	0.002
d1jc2a_		75	a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus)	0.003
d1yuta1		98	a.39.1.2 (A:1-98) Calcyclin (S100) {Human (Homo sa	0.003
d1a4pa_		92	a.39.1.2 (A:) Calcyclin (S100) {Human (Homo sapien	0.003
d1qjta_		99	a.39.1.6 (A:) Eps15 {Mouse (Mus musculus) [TaxId:	0.003
d3c1va1		93	a.39.1.2 (A:2-94) Calcyclin (S100) {Human (Homo sa	0.004

>d1orsc_ f.14.1.1 (C:) Potassium channel KVAP {Archaeon Aeropyrum pernix [TaxId: 56636]} Length = 132	Back information, alignment and structure


class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel KVAP
species: Archaeon Aeropyrum pernix [TaxId: 56636]

 Score = 46.1 bits (109), Expect = 1e-06
 Identities = 19/142 (13%), Positives = 49/142 (34%), Gaps = 12/142 (8%)

Query: 441 FIRSTKFGYMISIILIVNLVAVIVETTLDIQESSLQSVWQEVEFVFGWIYVLEMALKIYS 500
            +        +S   +++++ V+VE T+ +           V+ +   I   + A + Y 
Sbjct: 2   VMEHPLVELGVSYAALLSVIVVVVEYTMQLSGEY-LVRLYLVDLILVIILWADYAYRAYK 60

Query: 501 YGFENYWRDGQNRFDFLVTWVIVIGETITLASPNGQTFLSNGEWIRYLLLARMLRLIRLL 560
            G        +  ++              + +        +   +    L R+LR +R+L
Sbjct: 61  SGD-PAGYVKKTLYEIP----------ALVPAGLLALIEGHLAGLGLFRLVRLLRFLRIL 109

Query: 561 MHVQQYRGFVATFLTLIPSLMP 582
           + + +   F++        L+P
Sbjct: 110 LIISRGSKFLSAIADAADKLVP 131

PyMOL of d1orsc_

>d1oqpa_ a.39.1.5 (A:) Caltractin (centrin 2) {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 77	Back information, alignment and structure

>d1rwya_ a.39.1.4 (A:) Parvalbumin {Rat (Rattus rattus) [TaxId: 10117]} Length = 109	Back information, alignment and structure

>d2pvba_ a.39.1.4 (A:) Parvalbumin {Pike (Esox lucius) [TaxId: 8010]} Length = 107	Back information, alignment and structure

>d1pvaa_ a.39.1.4 (A:) Parvalbumin {Pike (Esox lucius) [TaxId: 8010]} Length = 109	Back information, alignment and structure

>d2opoa1 a.39.1.10 (A:6-86) Polcalcin Che a 3 {Pigweed (Chenopodium album) [TaxId: 3559]} Length = 81	Back information, alignment and structure

>d5pala_ a.39.1.4 (A:) Parvalbumin {Leopard shark (Triakis semifasciata) [TaxId: 30493]} Length = 109	Back information, alignment and structure

>d1rroa_ a.39.1.4 (A:) Oncomodulin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 108	Back information, alignment and structure

>d2fcea1 a.39.1.5 (A:84-144) Calmodulin {Cow (Bos taurus) [TaxId: 9913]} Length = 61	Back information, alignment and structure

>d1fi5a_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus), cardiac isoform [TaxId: 9031]} Length = 81	Back information, alignment and structure

>d1c7va_ a.39.1.5 (A:) Calcium vector protein {Amphioxus (Branchiostoma lanceolatum) [TaxId: 7740]} Length = 68	Back information, alignment and structure

>d1s6ja_ a.39.1.5 (A:) Calcium-dependent protein kinase sk5 CLD {Soybean (Glycine max) [TaxId: 3847]} Length = 87	Back information, alignment and structure

>d1f54a_ a.39.1.5 (A:) Calmodulin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 77	Back information, alignment and structure

>d1topa_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]} Length = 162	Back information, alignment and structure

>d1fw4a_ a.39.1.5 (A:) Calmodulin {Cow (Bos taurus) [TaxId: 9913]} Length = 65	Back information, alignment and structure

>d2obha1 a.39.1.5 (A:26-166) Calmodulin {Human (Homo sapiens) [TaxId: 9606]} Length = 141	Back information, alignment and structure

>d1ij5a_ a.39.1.9 (A:) Cbp40 (plasmodial specific CaII-binding protein LAV1-2) {Physarum polycephalum [TaxId: 5791]} Length = 321	Back information, alignment and structure

>d2pq3a1 a.39.1.5 (A:3-75) Calmodulin {Rattus norvegicus [TaxId: 10116]} Length = 73	Back information, alignment and structure

>d1avsa_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]} Length = 81	Back information, alignment and structure

>d1dtla_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]} Length = 156	Back information, alignment and structure

>d1zfsa1 a.39.1.2 (A:1-93) Calcyclin (S100) {Rat (Rattus norvegicus), s100a1 [TaxId: 10116]} Length = 93	Back information, alignment and structure

>d1tiza_ a.39.1.5 (A:) Calmodulin-related protein T21P5.17 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 67	Back information, alignment and structure

>d1jc2a_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]} Length = 75	Back information, alignment and structure

>d1yuta1 a.39.1.2 (A:1-98) Calcyclin (S100) {Human (Homo sapiens), s100a13 [TaxId: 9606]} Length = 98	Back information, alignment and structure

>d1a4pa_ a.39.1.2 (A:) Calcyclin (S100) {Human (Homo sapiens), P11 s100a10, calpactin [TaxId: 9606]} Length = 92	Back information, alignment and structure

>d1qjta_ a.39.1.6 (A:) Eps15 {Mouse (Mus musculus) [TaxId: 10090]} Length = 99	Back information, alignment and structure

>d3c1va1 a.39.1.2 (A:2-94) Calcyclin (S100) {Human (Homo sapiens), s100a4 [TaxId: 9606]} Length = 93	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		745
d1orsc_		132	Potassium channel KVAP {Archaeon Aeropyrum pernix	99.69
d1orsc_		132	Potassium channel KVAP {Archaeon Aeropyrum pernix	99.21
d1r3jc_		103	Potassium channel protein {Streptomyces coelicolor	98.22
d1p7ba2		116	Inward rectifier potassium channel Kirbac1.1 {Burk	97.18
d1xl4a2		116	Inward rectifier potassium channel kirbac3.1 {Magn	97.05
d1r3jc_		103	Potassium channel protein {Streptomyces coelicolor	97.01
d2h8pc1		57	Potassium channel protein {Streptomyces coelicolor	96.97
d1qv0a_		189	Calcium-regulated photoprotein {Hydrozoa (Obelia l	96.61
d1wlza1		83	DJ-1-binding protein, DJBP {Human (Homo sapiens) [	96.61
d1fi6a_		92	Reps1 {Mouse (Mus musculus) [TaxId: 10090]}	95.93
d1uhka1		187	Calcium-regulated photoprotein {Jellyfish (Aequore	95.92
d1c07a_		95	Eps15 {Human (Homo sapiens) [TaxId: 9606]}	95.78
d1oqpa_		77	Caltractin (centrin 2) {Green algae (Chlamydomonas	95.77
d1fw4a_		65	Calmodulin {Cow (Bos taurus) [TaxId: 9913]}	95.28
d1avsa_		81	Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}	95.24
d1tiza_		67	Calmodulin-related protein T21P5.17 {Thale cress (	95.24
d1wrka1		82	Troponin C {Human (Homo sapiens), cardiac isoform	95.23
d1rwya_		109	Parvalbumin {Rat (Rattus rattus) [TaxId: 10117]}	95.21
d1jc2a_		75	Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}	95.17
d2pvba_		107	Parvalbumin {Pike (Esox lucius) [TaxId: 8010]}	95.16
d1xo5a_		180	Calcium- and integrin-binding protein, CIB {Human	95.02
d1fi5a_		81	Troponin C {Chicken (Gallus gallus), cardiac isofo	95.02
d2fcea1		61	Calmodulin {Cow (Bos taurus) [TaxId: 9913]}	95.01
d2pq3a1		73	Calmodulin {Rattus norvegicus [TaxId: 10116]}	94.98
d5pala_		109	Parvalbumin {Leopard shark (Triakis semifasciata)	94.97
d1rroa_		108	Oncomodulin {Rat (Rattus norvegicus) [TaxId: 10116	94.95
d1f54a_		77	Calmodulin {Baker's yeast (Saccharomyces cerevisia	94.92
d2jxca1		95	Eps15 {Human (Homo sapiens) [TaxId: 9606]}	94.73
d1pvaa_		109	Parvalbumin {Pike (Esox lucius) [TaxId: 8010]}	94.59
d2opoa1		81	Polcalcin Che a 3 {Pigweed (Chenopodium album) [Ta	94.59
d2mysc_		145	Myosin Regulatory Chain {Chicken (Gallus gallus) [	94.54
d1iq3a_		110	Pob1 {Human (Homo sapiens) [TaxId: 9606]}	93.92
d1c7va_		68	Calcium vector protein {Amphioxus (Branchiostoma l	93.85
d1lkja_		146	Calmodulin {Baker's yeast (Saccharomyces cerevisia	93.71
d2sasa_		185	Sarcoplasmic calcium-binding protein {Amphioxus (B	93.45
d1dtla_		156	Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}	93.37
d2mysb_		145	Myosin Essential Chain {Chicken (Gallus gallus) [T	92.85
d1a4pa_		92	Calcyclin (S100) {Human (Homo sapiens), P11 s100a1	92.82
d1exra_		146	Calmodulin {Ciliate (Paramecium tetraurelia) [TaxI	92.82
d1topa_		162	Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}	92.74
d1zfsa1		93	Calcyclin (S100) {Rat (Rattus norvegicus), s100a1	92.69
d1m45a_		146	Myosin Light Chain Mlc1p {Baker's yeast (Saccharom	92.55
d1g8ia_		187	Frequenin (neuronal calcium sensor 1) {Human (Homo	92.41
d1qjta_		99	Eps15 {Mouse (Mus musculus) [TaxId: 10090]}	92.3
d2obha1		141	Calmodulin {Human (Homo sapiens) [TaxId: 9606]}	92.16
d1s6ja_		87	Calcium-dependent protein kinase sk5 CLD {Soybean	92.13
d1ggwa_		140	Cdc4p {Fission yeast (Schizosaccharomyces pombe) [	91.93
d1wdcb_		142	Myosin Essential Chain {Bay scallop (Aequipecten i	91.59
d1w7jb1		139	Myosin Essential Chain {Human (Homo sapiens) [TaxI	91.35
d1nyaa_		176	Calerythrin {Saccharopolyspora erythraea [TaxId: 1	91.32
d2scpa_		174	Sarcoplasmic calcium-binding protein {Sandworm (Ne	90.74
d1y1xa_		182	Programmed cell death 6 protein-like protein {Leis	90.5
d1qx2a_		76	Calbindin D9K {Cow (Bos taurus) [TaxId: 9913]}	89.19
d1bjfa_		181	Neurocalcin {Cow (Bos taurus) [TaxId: 9913]}	88.99
d1fpwa_		190	Frequenin (neuronal calcium sensor 1) {Baker's yea	88.79
d1auib_		165	Calcineurin regulatory subunit (B-chain) {Human (H	88.34
d3c1va1		93	Calcyclin (S100) {Human (Homo sapiens), s100a4 [Ta	87.56
d1ksoa_		93	Calcyclin (S100) {Human (Homo sapiens), s100a3 [Ta	86.24
d1omra_		201	Recoverin {Cow (Bos taurus) [TaxId: 9913]}	85.48
d1jfja_		134	EHCABP {Entamoeba (Entamoeba histolytica) [TaxId:	83.79
d1hqva_		181	Apoptosis-linked protein alg-2 {Mouse (Mus musculu	83.71
d1wdcc_		152	Myosin Regulatory Chain {Bay scallop (Aequipecten	83.19
d1s6ca_		178	Kchip1, Kv4 potassium channel-interacting protein	82.06
d1snla_		99	Nucleobindin 1 (CALNUC) {Human (Homo sapiens) [Tax	81.26
d1ij5a_		321	Cbp40 (plasmodial specific CaII-binding protein LA	80.99
d1cb1a_		78	Calbindin D9K {Pig (Sus scrofa) [TaxId: 9823]}	80.53

>d1orsc_ f.14.1.1 (C:) Potassium channel KVAP {Archaeon Aeropyrum pernix [TaxId: 56636]}	Back information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel KVAP
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=99.69  E-value=8.1e-17  Score=115.23  Aligned_cols=130  Identities=15%  Similarity=0.211  Sum_probs=108.4

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCHHHHHHH
Q ss_conf             11320188999999999898887422322112235678999999999999999987774214112320344320369999
Q 004548          441 FIRSTKFGYMISIILIVNLVAVIVETTLDIQESSLQSVWQEVEFVFGWIYVLEMALKIYSYGFENYWRDGQNRFDFLVTW  520 (745)
Q Consensus       441 iv~~~~f~~~i~~iilln~i~l~~e~~~~~~~~~~~~~~~~ie~~f~~if~~E~~lKi~a~g~~~y~~~~wn~fD~~ivi  520 (745)
                      +++||.|+..+..++++|++.+++|+.++. +......+.++|.+++.+|++|+++|+++.|. +|....||++|+++++
T Consensus         2 ~i~~p~~e~~i~~lillnvi~~~let~~~~-~~~~~~~l~~~e~v~~~iF~~E~~lrl~~~~~-~~~~~~~~~iDl~ai~   79 (132)
T d1orsc_           2 VMEHPLVELGVSYAALLSVIVVVVEYTMQL-SGEYLVRLYLVDLILVIILWADYAYRAYKSGD-PAGYVKKTLYEIPALV   79 (132)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHHHHHHHSCC-CSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-TTTTTTTCGGGTGGGS
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCEECCCCHHHHHHHH
T ss_conf             330127999999999999999998814312-31166799999999999999999999995984-1315773149999999


Q ss_pred             HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999777613899864455146999999999999999999877488999999998986987
Q 004548          521 VIVIGETITLASPNGQTFLSNGEWIRYLLLARMLRLIRLLMHVQQYRGFVATFLTLIPSLMP  582 (745)
Q Consensus       521 ~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~RvlR~lrl~~~~~~lr~l~~tl~~~~~~l~~  582 (745)
                      ..++.....          ...+.+|++|++|++|++|+.+..++++.+.+++.++.+.+.+
T Consensus        80 p~~~~~~~~----------~~~~~lr~lR~~R~~R~lrl~~~~~~~~~ll~ai~~s~~~lv~  131 (132)
T d1orsc_          80 PAGLLALIE----------GHLAGLGLFRLVRLLRFLRILLIISRGSKFLSAIADAADKLVP  131 (132)
T ss_dssp             CHHHHHHHH----------HHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             999998600----------0389999999999999999999999999999999999996458

PyMOL of d1orsc_

>d1orsc_ f.14.1.1 (C:) Potassium channel KVAP {Archaeon Aeropyrum pernix [TaxId: 56636]}	Back information, alignment and structure

>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}	Back information, alignment and structure

>d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]}	Back information, alignment and structure

>d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]}	Back information, alignment and structure

>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}	Back information, alignment and structure

>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}	Back information, alignment and structure

>d1qv0a_ a.39.1.5 (A:) Calcium-regulated photoprotein {Hydrozoa (Obelia longissima), obelin [TaxId: 32570]}	Back information, alignment and structure

>d1wlza1 a.39.1.7 (A:229-311) DJ-1-binding protein, DJBP {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1fi6a_ a.39.1.6 (A:) Reps1 {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1uhka1 a.39.1.5 (A:3-189) Calcium-regulated photoprotein {Jellyfish (Aequorea aequorea), aequorin [TaxId: 168712]}	Back information, alignment and structure

>d1c07a_ a.39.1.6 (A:) Eps15 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1oqpa_ a.39.1.5 (A:) Caltractin (centrin 2) {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}	Back information, alignment and structure

>d1fw4a_ a.39.1.5 (A:) Calmodulin {Cow (Bos taurus) [TaxId: 9913]}	Back information, alignment and structure

>d1avsa_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}	Back information, alignment and structure

>d1tiza_ a.39.1.5 (A:) Calmodulin-related protein T21P5.17 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}	Back information, alignment and structure

>d1wrka1 a.39.1.5 (A:4-85) Troponin C {Human (Homo sapiens), cardiac isoform [TaxId: 9606]}	Back information, alignment and structure

>d1rwya_ a.39.1.4 (A:) Parvalbumin {Rat (Rattus rattus) [TaxId: 10117]}	Back information, alignment and structure

>d1jc2a_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}	Back information, alignment and structure

>d2pvba_ a.39.1.4 (A:) Parvalbumin {Pike (Esox lucius) [TaxId: 8010]}	Back information, alignment and structure

>d1xo5a_ a.39.1.5 (A:) Calcium- and integrin-binding protein, CIB {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1fi5a_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus), cardiac isoform [TaxId: 9031]}	Back information, alignment and structure

>d2fcea1 a.39.1.5 (A:84-144) Calmodulin {Cow (Bos taurus) [TaxId: 9913]}	Back information, alignment and structure

>d2pq3a1 a.39.1.5 (A:3-75) Calmodulin {Rattus norvegicus [TaxId: 10116]}	Back information, alignment and structure

>d5pala_ a.39.1.4 (A:) Parvalbumin {Leopard shark (Triakis semifasciata) [TaxId: 30493]}	Back information, alignment and structure

>d1rroa_ a.39.1.4 (A:) Oncomodulin {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d1f54a_ a.39.1.5 (A:) Calmodulin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d2jxca1 a.39.1.6 (A:121-215) Eps15 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1pvaa_ a.39.1.4 (A:) Parvalbumin {Pike (Esox lucius) [TaxId: 8010]}	Back information, alignment and structure

>d2opoa1 a.39.1.10 (A:6-86) Polcalcin Che a 3 {Pigweed (Chenopodium album) [TaxId: 3559]}	Back information, alignment and structure

>d2mysc_ a.39.1.5 (C:) Myosin Regulatory Chain {Chicken (Gallus gallus) [TaxId: 9031]}	Back information, alignment and structure

>d1iq3a_ a.39.1.6 (A:) Pob1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1c7va_ a.39.1.5 (A:) Calcium vector protein {Amphioxus (Branchiostoma lanceolatum) [TaxId: 7740]}	Back information, alignment and structure

>d1lkja_ a.39.1.5 (A:) Calmodulin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d2sasa_ a.39.1.5 (A:) Sarcoplasmic calcium-binding protein {Amphioxus (Branchiostoma lanceolatum) [TaxId: 7740]}	Back information, alignment and structure

>d1dtla_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}	Back information, alignment and structure

>d2mysb_ a.39.1.5 (B:) Myosin Essential Chain {Chicken (Gallus gallus) [TaxId: 9031]}	Back information, alignment and structure

>d1a4pa_ a.39.1.2 (A:) Calcyclin (S100) {Human (Homo sapiens), P11 s100a10, calpactin [TaxId: 9606]}	Back information, alignment and structure

>d1exra_ a.39.1.5 (A:) Calmodulin {Ciliate (Paramecium tetraurelia) [TaxId: 5888]}	Back information, alignment and structure

>d1topa_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}	Back information, alignment and structure

>d1zfsa1 a.39.1.2 (A:1-93) Calcyclin (S100) {Rat (Rattus norvegicus), s100a1 [TaxId: 10116]}	Back information, alignment and structure

>d1m45a_ a.39.1.5 (A:) Myosin Light Chain Mlc1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1g8ia_ a.39.1.5 (A:) Frequenin (neuronal calcium sensor 1) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1qjta_ a.39.1.6 (A:) Eps15 {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d2obha1 a.39.1.5 (A:26-166) Calmodulin {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1s6ja_ a.39.1.5 (A:) Calcium-dependent protein kinase sk5 CLD {Soybean (Glycine max) [TaxId: 3847]}	Back information, alignment and structure

>d1ggwa_ a.39.1.5 (A:) Cdc4p {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}	Back information, alignment and structure

>d1wdcb_ a.39.1.5 (B:) Myosin Essential Chain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}	Back information, alignment and structure

>d1w7jb1 a.39.1.5 (B:11-149) Myosin Essential Chain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1nyaa_ a.39.1.5 (A:) Calerythrin {Saccharopolyspora erythraea [TaxId: 1836]}	Back information, alignment and structure

>d2scpa_ a.39.1.5 (A:) Sarcoplasmic calcium-binding protein {Sandworm (Nereis diversicolor) [TaxId: 126592]}	Back information, alignment and structure

>d1y1xa_ a.39.1.8 (A:) Programmed cell death 6 protein-like protein {Leishmania major [TaxId: 5664]}	Back information, alignment and structure

>d1qx2a_ a.39.1.1 (A:) Calbindin D9K {Cow (Bos taurus) [TaxId: 9913]}	Back information, alignment and structure

>d1bjfa_ a.39.1.5 (A:) Neurocalcin {Cow (Bos taurus) [TaxId: 9913]}	Back information, alignment and structure

>d1fpwa_ a.39.1.5 (A:) Frequenin (neuronal calcium sensor 1) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1auib_ a.39.1.5 (B:) Calcineurin regulatory subunit (B-chain) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d3c1va1 a.39.1.2 (A:2-94) Calcyclin (S100) {Human (Homo sapiens), s100a4 [TaxId: 9606]}	Back information, alignment and structure

>d1ksoa_ a.39.1.2 (A:) Calcyclin (S100) {Human (Homo sapiens), s100a3 [TaxId: 9606]}	Back information, alignment and structure

>d1omra_ a.39.1.5 (A:) Recoverin {Cow (Bos taurus) [TaxId: 9913]}	Back information, alignment and structure

>d1jfja_ a.39.1.5 (A:) EHCABP {Entamoeba (Entamoeba histolytica) [TaxId: 5759]}	Back information, alignment and structure

>d1hqva_ a.39.1.8 (A:) Apoptosis-linked protein alg-2 {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1wdcc_ a.39.1.5 (C:) Myosin Regulatory Chain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}	Back information, alignment and structure

>d1s6ca_ a.39.1.5 (A:) Kchip1, Kv4 potassium channel-interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d1snla_ a.39.1.7 (A:) Nucleobindin 1 (CALNUC) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ij5a_ a.39.1.9 (A:) Cbp40 (plasmodial specific CaII-binding protein LAV1-2) {Physarum polycephalum [TaxId: 5791]}	Back information, alignment and structure

>d1cb1a_ a.39.1.1 (A:) Calbindin D9K {Pig (Sus scrofa) [TaxId: 9823]}	Back information, alignment and structure