Citrus Sinensis ID: 004583

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740----
MTMNERKTIDLEQGWEFMQKGITKLKNILEGLPEPQFSSEDYMMLYTTIYNMCTQKPPHDYSQQLYDKYRESFEEYISSTVLPSIREKHDEFMLRELVKRWSNHKVMVRWLSRFFHYLDRYFIARRSLPPLNEVGLTCFRDLVYTELNGKVRDAVITLIDQEREGEQIDRALLKNVLDIFVEIGMGQMDYYENDFETAMLKDTAAYYSRKASNWILEDSCPDYMLKAEECLKREKDRVSHYLHSSSEPKLLEKVQHELLSVYANQLLEKEHSGCHALLRDDKVEDLSRMFRLFSKIPRGLDPVSNIFKQHVTAEGTALVKLAEDAASNKKAEKRDVVGLQEQVFVRKVIELHDKYLAYVNDCFQNHTLFHKSLKEAFEVFCNKGVAGSSSAELLATFCDNILKKGGSEKLSDEAIEEMLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDKSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQTSFEEYLSNNPNANPGIDLTVTVLTTGFWPSYKSFDLNLPAEMVKCVEVFREFYQTKTKHRKLTWIYSLGTCNLLGKFESRTTELIVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEPNTKTISPTDHFEFNSKFTDKMRRIKIPLPPVDEKKKVIEDVDKDRRYAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSNPNMFRYLA
ccccccccccHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHccHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHccccHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHccccHHHHHHHHHcHHHHHHHHHHHHHHHHHHcccccccccccEEEEEccccccccccccccccHHHHHHHHHHHHHHHHcccccEEEEEcccccEEEEEEEEcccEEEEEcHHHHHHHHHHcccccccHHHHHHHHcccHHHHHHHHHHHHHcccccccccccccccccccEEEEcccccccccEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccccccccccccEEEcc
ccccccccccHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHcHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccHHHccHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEEEEcccccccccccccccHHHHHHHHHHHHHHHHcccccEEEEEEccccEEEEEEcccccEEEEEEHHHHHHHHHHcccccccHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccccccccccccEEEEcccccccEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccccccccEEEcc
mtmnerktIDLEQGWEFMQKGITKLKNIleglpepqfssedYMMLYTTIYNmctqkpphdysqQLYDKYRESFEEYISstvlpsirekHDEFMLRELVKRWSNHKVMVRWLSRFFHYLDRYFIarrslpplnevgltCFRDLVYTELNGKVRDAVITLIDQEREGEQIDRALLKNVLDIFVEIgmgqmdyyENDFETAMLKDTAAYYsrkasnwiledscpdyMLKAEECLKREKDRVshylhsssepklLEKVQHELLSVYANQLLEkehsgchallrddkvEDLSRMFRLFskiprgldpvsnIFKQHVTAEGTALVKLAEDAAsnkkaekrdvvGLQEQVFVRKVIELHDKYLAYVNDCFQNHTLFHKSLKEAFEVFCnkgvagssSAELLATFCDNILkkggseklsDEAIEEMLEKVVKLLAYISDKDLFAEFYRKKLARRLlfdksanddhERSILTKLKqqcggqftskmegMVTDLTLARENQTSFEEYLsnnpnanpgidLTVTVLTtgfwpsyksfdlnlpaEMVKCVEVFREFYQTktkhrkltwIYSLGTcnllgkfesrtTELIVTTYQASALLLFnssdrlsysEIMTQLNLSDDDVVRLLHSLSCAKYkilnkepntktisptdhfefnskftdkmrrikiplppvdekkkvIEDVDKDRRYAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRdylerdksnpnmfryla
mtmnerktidleqgWEFMQKGITKLKNILEGLPEPQFSSEDYMMLYTTIYNMCTQKPPHDYSQQLYDKYRESFEEYISstvlpsirekHDEFMLRELVKRWSNHKVMVRWLSRFFHYLDRYFIARRSLPPLNEVGLTCFRDLVYTELNGKVRDAVITLidqeregeqidRALLKNVLDIFVEIGMGQMDYYENDFETAMLKDTAAYYSRKASNWILEDSCPDYMLKAEECLKREKDRVSHYLHSSSEPKLLEKVQHELLSVYANQLLEKEHSGCHALLRDDKVEDLSRMFRLFskiprgldpvSNIFKQHVTAEGTALVKLAEDAasnkkaekrdvvglqeqVFVRKVIELHDKYLAYVNDCFQNHTLFHKSLKEAFEVFCNKGVAGSSSAELLATFCDNILKKGGSEKLSDEAIEEMLEKVVKLLAYISDKDLFAEFYRKKLARRLLfdksanddhersiltklkqqcggqftskMEGMVTDLTLARENQTSFEEYLsnnpnanpGIDLTVTVLTTGFWPSYKSFDLNLPAEMVKCVEVFREFYQtktkhrkltwiySLGTCNLLGKFESRTTELIVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAkykilnkepntktisptdhfefnskftdkmrrikiplppvdekkkviedvdkdrryAIDASIVRIMKSRKVLGHQQLVLECVEQlgrmfkpdfkaIKKRIEDlitrdylerdksnpnmfryla
MTMNERKTIDLEQGWEFMQKGITKLKNILEGLPEPQFSSEDYMMLYTTIYNMCTQKPPHDYSQQLYDKYRESFEEYISSTVLPSIREKHDEFMLRELVKRWSNHKVMVRWLSRFFHYLDRYFIARRSLPPLNEVGLTCFRDLVYTELNGKVRDAVITLIDQEREGEQIDRALLKNVLDIFVEIGMGQMDYYENDFETAMLKDTAAYYSRKASNWILEDSCPDYMLKAEECLKREKDRVSHYLHSSSEPKLLEKVQHELLSVYANQLLEKEHSGCHALLRDDKVEDLSRMFRLFSKIPRGLDPVSNIFKQHVTAEGTALVKLAEDAASNKKAEKRDVVGLQEQVFVRKVIELHDKYLAYVNDCFQNHTLFHKSLKEAFEVFCNKGVAGSSSAELLATFCDNILKKGGSEKLSDEAIEEMLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDKSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQTSFEEYLSNNPNANPGIDLTVTVLTTGFWPSYKSFDLNLPAEMVKCVEVFREFYQTKTKHRKLTWIYSLGTCNLLGKFESRTTELIVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEPNTKTISPTDHFEFNSKFTDKMRRIKIPLPPvdekkkviedvdkdRRYAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSNPNMFRYLA
**********LEQGWEFMQKGITKLKNILEGLPEPQFSSEDYMMLYTTIYNMCTQKPPHDYSQQLYDKYRESFEEYISSTVLPSIREKHDEFMLRELVKRWSNHKVMVRWLSRFFHYLDRYFIARRSLPPLNEVGLTCFRDLVYTELNGKVRDAVITLIDQEREGEQIDRALLKNVLDIFVEIGMGQMDYYENDFETAMLKDTAAYYSRKASNWILEDSCPDYMLKAEECLKR*******Y********LLEKVQHELLSVYANQLLEKEHSGCHALLRDDKVEDLSRMFRLFSKIPRGLDPVSNIFKQHVTAEGTALVKLA************DVVGLQEQVFVRKVIELHDKYLAYVNDCFQNHTLFHKSLKEAFEVFCNKGVAGSSSAELLATFCDNILKKGG***L*DEAIEEMLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDK*********ILTKLKQQCGGQF******MVTDLTL*****************ANPGIDLTVTVLTTGFWPSYKSFDLNLPAEMVKCVEVFREFYQTKTKHRKLTWIYSLGTCNLLGKFESRTTELIVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE**********HFEFNSKFTDKMRRIKIPL*******KVIEDVDKDRRYAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYL**************
******K****EQGWEFMQKGITKLKNILEG**E**F**EDYMMLYTTIYNMCTQKPPHDYSQQLYDKYRESFEEYISSTVLPSIREKHDEFMLRELVKRWSNHKVMVRWLSRFFHYLDRYFIARRSLPPLNEVGLTCFRDLVYTELNGKVRDAVITLIDQEREGEQIDRALLKNVLDIFVEIGMGQMDYYENDFETAMLKDTAAYYSRKASNWILEDSCPDYMLKAEECLKREKDRVSHYLHSSSEPKLLEKVQHELLSVYANQLLEKEHSGCHALLRDDKVEDLSRMFRLFSKIPRGLDPVSNIFKQHVTAEGTALVKLA*************VVGLQEQVFVRKVIELHDKYLAYVNDCFQNHTLFHKSLKEAFEVFCNKGVAGSSSAELLATFCDNILK************EEMLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDK**NDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQTSFE************IDLTVTVLTTGFWPSYKSFDLNLPAEMVKCVEVFREFYQTKTKHRKLTWIYSLGTCNLLGKFESRTTELIVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILN*******ISPTDHFEFNSKFTDKMRRIK******************DRRYAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSNPNMFRYLA
MTMNERKTIDLEQGWEFMQKGITKLKNILEGLPEPQFSSEDYMMLYTTIYNMCTQKPPHDYSQQLYDKYRESFEEYISSTVLPSIREKHDEFMLRELVKRWSNHKVMVRWLSRFFHYLDRYFIARRSLPPLNEVGLTCFRDLVYTELNGKVRDAVITLIDQEREGEQIDRALLKNVLDIFVEIGMGQMDYYENDFETAMLKDTAAYYSRKASNWILEDSCPDYMLKAEECLKREKDRVSHYLHSSSEPKLLEKVQHELLSVYANQLLEKEHSGCHALLRDDKVEDLSRMFRLFSKIPRGLDPVSNIFKQHVTAEGTALVKLAEDAASNKKAEKRDVVGLQEQVFVRKVIELHDKYLAYVNDCFQNHTLFHKSLKEAFEVFCNKGVAGSSSAELLATFCDNILKKGGSEKLSDEAIEEMLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDKSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQTSFEEYLSNNPNANPGIDLTVTVLTTGFWPSYKSFDLNLPAEMVKCVEVFREFYQTKTKHRKLTWIYSLGTCNLLGKFESRTTELIVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEPNTKTISPTDHFEFNSKFTDKMRRIKIPLPPVDEKKKVIEDVDKDRRYAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSNPNMFRYLA
******KTIDLEQGWEFMQKGITKLKNILEGLPEPQFSSEDYMMLYTTIYNMCTQKPPHDYSQQLYDKYRESFEEYISSTVLPSIREKHDEFMLRELVKRWSNHKVMVRWLSRFFHYLDRYFIARRSLPPLNEVGLTCFRDLVYTELNGKVRDAVITLIDQEREGEQIDRALLKNVLDIFVEIGMGQMDYYENDFETAMLKDTAAYYSRKASNWILEDSCPDYMLKAEECLKREKDRVSHYLHSSSEPKLLEKVQHELLSVYANQLLEKEHSGCHALLRDDKVEDLSRMFRLFSKIPRGLDPVSNIFKQHVTAEGTALVKLAEDAAS**********GLQEQVFVRKVIELHDKYLAYVNDCFQNHTLFHKSLKEAFEVFCNKGVAGSSSAELLATFCDNILKKGGSEKLSDEAIEEMLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDKSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQTSFEEYLSNNPNANPGIDLTVTVLTTGFWPSYKSFDLNLPAEMVKCVEVFREFYQTKTKHRKLTWIYSLGTCNLLGKFESRTTELIVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEPNTKTISPTDHFEFNSKFTDKMRRIKIPLPPVDEKKKVIEDVDKDRRYAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSNPNMFRYLA
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MTMNERKTIDLEQGWEFMQKGITKLKNILEGLPEPQFSSEDYMMLYTTIYNMCTQKPPHDYSQQLYDKYRESFEEYISSTVLPSIREKHDEFMLRELVKRWSNHKVMVRWLSRFFHYLDRYFIARRSLPPLNEVGLTCFRDLVYTELNGKVRDAVITLIDQEREGEQIDRALLKNVLDIFVEIGMGQMDYYENDFETAMLKDTAAYYSRKASNWILEDSCPDYMLKAEECLKREKDRVSHYLHSSSEPKLLEKVQHELLSVYANQLLEKEHSGCHALLRDDKVEDLSRMFRLFSKIPRGLDPVSNIFKQHVTAEGTALVKLxxxxxxxxxxxxxxxxxxxxxVFVRKVIELHDKYLAYVNDCFQNHTLFHKSLKEAFEVFCNKGVAGSSSAELLATFCDNILKKGGSEKLSDEAIEEMLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDKSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQTSFEEYLSNNPNANPGIDLTVTVLTTGFWPSYKSFDLNLPAEMVKCVEVFREFYQTKTKHRKLTWIYSLGTCNLLGKFESRTTELIVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEPNTKTISPTDHFEFNSKFTDKMRRIKIPLPPVDEKKKVIEDVDKDRRYAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSNPNMFRYLA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query744 2.2.26 [Sep-21-2011]
Q94AH6738 Cullin-1 OS=Arabidopsis t yes no 0.990 0.998 0.835 0.0
Q9SRZ0742 Cullin-2 OS=Arabidopsis t no no 0.985 0.987 0.661 0.0
P0CH31721 Putative cullin-like prot no no 0.952 0.983 0.659 0.0
Q54NZ5769 Cullin-3 OS=Dictyostelium yes no 0.935 0.905 0.352 1e-128
Q9XIE9374 Putative cullin-like prot no no 0.470 0.935 0.582 1e-123
Q13619759 Cullin-4A OS=Homo sapiens yes no 0.895 0.877 0.354 1e-118
Q9ZVH4732 Cullin-3A OS=Arabidopsis no no 0.938 0.953 0.342 1e-116
Q9C9L0732 Cullin-3B OS=Arabidopsis no no 0.938 0.953 0.336 1e-114
A2A432970 Cullin-4B OS=Mus musculus yes no 0.923 0.708 0.347 1e-112
Q6DE95768 Cullin-3-A OS=Xenopus lae N/A no 0.958 0.928 0.311 1e-111
>sp|Q94AH6|CUL1_ARATH Cullin-1 OS=Arabidopsis thaliana GN=CUL1 PE=1 SV=1 Back     alignment and function desciption
 Score = 1316 bits (3406), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 618/740 (83%), Positives = 687/740 (92%), Gaps = 3/740 (0%)

Query: 5   ERKTIDLEQGWEFMQKGITKLKNILEGLPEPQFSSEDYMMLYTTIYNMCTQKPPHDYSQQ 64
           ERKTIDLEQGW++MQ GITKLK ILEGL EP F SE YMMLYTTIYNMCTQKPPHDYSQQ
Sbjct: 2   ERKTIDLEQGWDYMQTGITKLKRILEGLNEPAFDSEQYMMLYTTIYNMCTQKPPHDYSQQ 61

Query: 65  LYDKYRESFEEYISSTVLPSIREKHDEFMLRELVKRWSNHKVMVRWLSRFFHYLDRYFIA 124
           LYDKYRE+FEEYI+STVLP++REKHDEFMLREL KRWSNHKVMVRWLSRFF+YLDRYFIA
Sbjct: 62  LYDKYREAFEEYINSTVLPALREKHDEFMLRELFKRWSNHKVMVRWLSRFFYYLDRYFIA 121

Query: 125 RRSLPPLNEVGLTCFRDLVYTELNGKVRDAVITLIDQEREGEQIDRALLKNVLDIFVEIG 184
           RRSLPPLNEVGLTCFRDLVY EL+ KV+ AVI L+D+EREGEQIDRALLKNVLDI+VEIG
Sbjct: 122 RRSLPPLNEVGLTCFRDLVYNELHSKVKQAVIALVDKEREGEQIDRALLKNVLDIYVEIG 181

Query: 185 MGQMDYYENDFETAMLKDTAAYYSRKASNWILEDSCPDYMLKAEECLKREKDRVSHYLHS 244
           MGQM+ YE DFE+ ML+DT++YYSRKAS+WI EDSCPDYMLK+EECLK+E++RV+HYLHS
Sbjct: 182 MGQMERYEEDFESFMLQDTSSYYSRKASSWIQEDSCPDYMLKSEECLKKERERVAHYLHS 241

Query: 245 SSEPKLLEKVQHELLSVYANQLLEKEHSGCHALLRDDKVEDLSRMFRLFSKIPRGLDPVS 304
           SSEPKL+EKVQHELL V+A+QLLEKEHSGC ALLRDDKV+DLSRM+RL+ KI RGL+PV+
Sbjct: 242 SSEPKLVEKVQHELLVVFASQLLEKEHSGCRALLRDDKVDDLSRMYRLYHKILRGLEPVA 301

Query: 305 NIFKQHVTAEGTALVKLAEDAASNKKAEKRDVVGLQEQVFVRKVIELHDKYLAYVNDCFQ 364
           NIFKQHVTAEG ALV+ AED A+N+ A   +   +QEQV +RKVIELHDKY+ YV +CFQ
Sbjct: 302 NIFKQHVTAEGNALVQQAEDTATNQVA---NTASVQEQVLIRKVIELHDKYMVYVTECFQ 358

Query: 365 NHTLFHKSLKEAFEVFCNKGVAGSSSAELLATFCDNILKKGGSEKLSDEAIEEMLEKVVK 424
           NHTLFHK+LKEAFE+FCNK VAGSSSAELLATFCDNILKKGGSEKLSDEAIE+ LEKVVK
Sbjct: 359 NHTLFHKALKEAFEIFCNKTVAGSSSAELLATFCDNILKKGGSEKLSDEAIEDTLEKVVK 418

Query: 425 LLAYISDKDLFAEFYRKKLARRLLFDKSANDDHERSILTKLKQQCGGQFTSKMEGMVTDL 484
           LLAYISDKDLFAEFYRKKLARRLLFD+SANDDHERSILTKLKQQCGGQFTSKMEGMVTDL
Sbjct: 419 LLAYISDKDLFAEFYRKKLARRLLFDRSANDDHERSILTKLKQQCGGQFTSKMEGMVTDL 478

Query: 485 TLARENQTSFEEYLSNNPNANPGIDLTVTVLTTGFWPSYKSFDLNLPAEMVKCVEVFREF 544
           TLARENQ SFE+YL +NP ANPGIDLTVTVLTTGFWPSYKSFD+NLP+EM+KCVEVF+ F
Sbjct: 479 TLARENQNSFEDYLGSNPAANPGIDLTVTVLTTGFWPSYKSFDINLPSEMIKCVEVFKGF 538

Query: 545 YQTKTKHRKLTWIYSLGTCNLLGKFESRTTELIVTTYQASALLLFNSSDRLSYSEIMTQL 604
           Y+TKTKHRKLTWIYSLGTC++ GKF+ +  ELIV+TYQA+ LLLFN++D+LSY+EI+ QL
Sbjct: 539 YETKTKHRKLTWIYSLGTCHINGKFDQKAIELIVSTYQAAVLLLFNTTDKLSYTEILAQL 598

Query: 605 NLSDDDVVRLLHSLSCAKYKILNKEPNTKTISPTDHFEFNSKFTDKMRRIKIPLPPVDEK 664
           NLS +D+VRLLHSLSCAKYKIL KEPNTKT+S  D FEFNSKFTD+MRRIKIPLPPVDE+
Sbjct: 599 NLSHEDLVRLLHSLSCAKYKILLKEPNTKTVSQNDAFEFNSKFTDRMRRIKIPLPPVDER 658

Query: 665 KKVIEDVDKDRRYAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDL 724
           KKV+EDVDKDRRYAIDA+IVRIMKSRKVLGHQQLV ECVEQL RMFKPD KAIKKR+EDL
Sbjct: 659 KKVVEDVDKDRRYAIDAAIVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDL 718

Query: 725 ITRDYLERDKSNPNMFRYLA 744
           ITRDYLERDK NPNMFRYLA
Sbjct: 719 ITRDYLERDKENPNMFRYLA 738
Involved in ubiquitination and subsequent proteasomal degradation of target proteins. Regulator of mitotic processes which plays a role during gametogenesis and embryogenesis. Together with SKP1, RBX1 and a F-box protein, it forms a SCF complex. The functional specificity of this complex depends of the type of F-box protein. SCF(UFO) is implicated in floral organ development. SCF(TIR1) is involved in auxin signaling pathway. SCF(COI1) regulates responses to jasmonates. SCF(EID1) and SCF(AFR) are implicated in phytochrome A light signaling. SCF(ADO1/ZTL), SCF(ADO2/LKP2), SCF(ADO3/FKF1) are related to the circadian clock. SCF(ORE9) seems to be involved in senescence. SCF(EBF1/EBF2) may regulate ethylene signaling.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9SRZ0|CUL2_ARATH Cullin-2 OS=Arabidopsis thaliana GN=CUL2 PE=1 SV=1 Back     alignment and function description
>sp|P0CH31|CLL1_ARATH Putative cullin-like protein 1 OS=Arabidopsis thaliana GN=At1g43140 PE=3 SV=1 Back     alignment and function description
>sp|Q54NZ5|CUL3_DICDI Cullin-3 OS=Dictyostelium discoideum GN=culC PE=3 SV=1 Back     alignment and function description
>sp|Q9XIE9|CLL2_ARATH Putative cullin-like protein 2 OS=Arabidopsis thaliana GN=At1g59790 PE=3 SV=2 Back     alignment and function description
>sp|Q13619|CUL4A_HUMAN Cullin-4A OS=Homo sapiens GN=CUL4A PE=1 SV=3 Back     alignment and function description
>sp|Q9ZVH4|CUL3A_ARATH Cullin-3A OS=Arabidopsis thaliana GN=CUL3A PE=1 SV=1 Back     alignment and function description
>sp|Q9C9L0|CUL3B_ARATH Cullin-3B OS=Arabidopsis thaliana GN=CUL3B PE=1 SV=1 Back     alignment and function description
>sp|A2A432|CUL4B_MOUSE Cullin-4B OS=Mus musculus GN=Cul4b PE=1 SV=1 Back     alignment and function description
>sp|Q6DE95|CUL3A_XENLA Cullin-3-A OS=Xenopus laevis GN=cul3a PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query744
255551707744 Cullin-1, putative [Ricinus communis] gi 1.0 1.0 0.969 0.0
224123204744 predicted protein [Populus trichocarpa] 1.0 1.0 0.963 0.0
449450670744 PREDICTED: cullin-1-like [Cucumis sativu 1.0 1.0 0.956 0.0
224107343742 predicted protein [Populus trichocarpa] 0.997 1.0 0.958 0.0
225432272744 PREDICTED: cullin-1 isoform 1 [Vitis vin 1.0 1.0 0.955 0.0
386688470744 cullin 1-like protein B [Prunus avium] 1.0 1.0 0.943 0.0
356563944744 PREDICTED: cullin-1-like isoform 1 [Glyc 1.0 1.0 0.939 0.0
356556122744 PREDICTED: cullin-1-like [Glycine max] 1.0 1.0 0.938 0.0
356529771744 PREDICTED: cullin-1-like [Glycine max] 1.0 1.0 0.936 0.0
356521879744 PREDICTED: cullin-1-like isoform 1 [Glyc 1.0 1.0 0.935 0.0
>gi|255551707|ref|XP_002516899.1| Cullin-1, putative [Ricinus communis] gi|223543987|gb|EEF45513.1| Cullin-1, putative [Ricinus communis] Back     alignment and taxonomy information
 Score = 1506 bits (3900), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 721/744 (96%), Positives = 736/744 (98%)

Query: 1   MTMNERKTIDLEQGWEFMQKGITKLKNILEGLPEPQFSSEDYMMLYTTIYNMCTQKPPHD 60
           MTMNERKTIDLEQGWEFMQKGITKLKNILEGLPEPQFSSEDYMMLYTTIYNMCTQKPPHD
Sbjct: 1   MTMNERKTIDLEQGWEFMQKGITKLKNILEGLPEPQFSSEDYMMLYTTIYNMCTQKPPHD 60

Query: 61  YSQQLYDKYRESFEEYISSTVLPSIREKHDEFMLRELVKRWSNHKVMVRWLSRFFHYLDR 120
           YSQQLYDKYRESFEEYI+STVLPS+REKHDEFMLRELVKRW+NHKVMVRWLSRFFHYLDR
Sbjct: 61  YSQQLYDKYRESFEEYITSTVLPSLREKHDEFMLRELVKRWANHKVMVRWLSRFFHYLDR 120

Query: 121 YFIARRSLPPLNEVGLTCFRDLVYTELNGKVRDAVITLIDQEREGEQIDRALLKNVLDIF 180
           YFIARRSLPPLNEVGLTCFRDLVY ELN KVRDAVI+LIDQEREGEQIDRALLKNVLDIF
Sbjct: 121 YFIARRSLPPLNEVGLTCFRDLVYQELNAKVRDAVISLIDQEREGEQIDRALLKNVLDIF 180

Query: 181 VEIGMGQMDYYENDFETAMLKDTAAYYSRKASNWILEDSCPDYMLKAEECLKREKDRVSH 240
           VEIGMGQMDYYENDFE AMLKDT +YYSRKASNWILEDSCPDYMLKAEECLKREKDRVSH
Sbjct: 181 VEIGMGQMDYYENDFEVAMLKDTGSYYSRKASNWILEDSCPDYMLKAEECLKREKDRVSH 240

Query: 241 YLHSSSEPKLLEKVQHELLSVYANQLLEKEHSGCHALLRDDKVEDLSRMFRLFSKIPRGL 300
           YLHSSSEPKLLEKVQ+ELLSV+ANQLLEKEHSGCHALLRDDKVEDLSRMFRLFSKIPRGL
Sbjct: 241 YLHSSSEPKLLEKVQYELLSVFANQLLEKEHSGCHALLRDDKVEDLSRMFRLFSKIPRGL 300

Query: 301 DPVSNIFKQHVTAEGTALVKLAEDAASNKKAEKRDVVGLQEQVFVRKVIELHDKYLAYVN 360
           DPVS+IFKQHVTAEGTALVKLAEDAASNKKAEKRDVVGLQEQVFVRKVIELHDKYLAYVN
Sbjct: 301 DPVSSIFKQHVTAEGTALVKLAEDAASNKKAEKRDVVGLQEQVFVRKVIELHDKYLAYVN 360

Query: 361 DCFQNHTLFHKSLKEAFEVFCNKGVAGSSSAELLATFCDNILKKGGSEKLSDEAIEEMLE 420
           DCFQNHTLFHK+LKEAFEVFCNKGVAGSSSAELLATFCDNILKKGGSEKLSDEAIEE LE
Sbjct: 361 DCFQNHTLFHKALKEAFEVFCNKGVAGSSSAELLATFCDNILKKGGSEKLSDEAIEETLE 420

Query: 421 KVVKLLAYISDKDLFAEFYRKKLARRLLFDKSANDDHERSILTKLKQQCGGQFTSKMEGM 480
           KVVKLLAYISDKDLFAEFYRKKLARRLLFDKSANDDHERSILTKLKQQCGGQFTSKMEGM
Sbjct: 421 KVVKLLAYISDKDLFAEFYRKKLARRLLFDKSANDDHERSILTKLKQQCGGQFTSKMEGM 480

Query: 481 VTDLTLARENQTSFEEYLSNNPNANPGIDLTVTVLTTGFWPSYKSFDLNLPAEMVKCVEV 540
           VTDLTLARENQTSFEEYLSNNPNANPGIDLTVTVLTTGFWPSYKSFDLNLPAEMVKCVEV
Sbjct: 481 VTDLTLARENQTSFEEYLSNNPNANPGIDLTVTVLTTGFWPSYKSFDLNLPAEMVKCVEV 540

Query: 541 FREFYQTKTKHRKLTWIYSLGTCNLLGKFESRTTELIVTTYQASALLLFNSSDRLSYSEI 600
           FREFYQTKTKHRKLTWIYSLGTCNL+GKFE +T ELIVTTYQASALLLFNSSDRLSYSEI
Sbjct: 541 FREFYQTKTKHRKLTWIYSLGTCNLIGKFEPKTMELIVTTYQASALLLFNSSDRLSYSEI 600

Query: 601 MTQLNLSDDDVVRLLHSLSCAKYKILNKEPNTKTISPTDHFEFNSKFTDKMRRIKIPLPP 660
           MTQLNL+DDDVVRLLHSLSCAKYKILNKEPNTK+ISPTD+FEFNSKFTDKMRRIKIPLPP
Sbjct: 601 MTQLNLTDDDVVRLLHSLSCAKYKILNKEPNTKSISPTDYFEFNSKFTDKMRRIKIPLPP 660

Query: 661 VDEKKKVIEDVDKDRRYAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKR 720
           VDEKKKVIEDVDKDRRYAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKR
Sbjct: 661 VDEKKKVIEDVDKDRRYAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKR 720

Query: 721 IEDLITRDYLERDKSNPNMFRYLA 744
           IEDLITRDYLERDK NPN+FRYLA
Sbjct: 721 IEDLITRDYLERDKDNPNLFRYLA 744

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224123204|ref|XP_002330364.1| predicted protein [Populus trichocarpa] gi|222871568|gb|EEF08699.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449450670|ref|XP_004143085.1| PREDICTED: cullin-1-like [Cucumis sativus] gi|449517495|ref|XP_004165781.1| PREDICTED: cullin-1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224107343|ref|XP_002314453.1| predicted protein [Populus trichocarpa] gi|222863493|gb|EEF00624.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225432272|ref|XP_002272195.1| PREDICTED: cullin-1 isoform 1 [Vitis vinifera] gi|297736859|emb|CBI26060.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|386688470|gb|AFJ21665.1| cullin 1-like protein B [Prunus avium] Back     alignment and taxonomy information
>gi|356563944|ref|XP_003550217.1| PREDICTED: cullin-1-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|356556122|ref|XP_003546376.1| PREDICTED: cullin-1-like [Glycine max] Back     alignment and taxonomy information
>gi|356529771|ref|XP_003533461.1| PREDICTED: cullin-1-like [Glycine max] Back     alignment and taxonomy information
>gi|356521879|ref|XP_003529578.1| PREDICTED: cullin-1-like isoform 1 [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query744
TAIR|locus:2132377738 CUL1 "cullin 1" [Arabidopsis t 0.990 0.998 0.820 0.0
TAIR|locus:2024755742 CUL2 "cullin 2" [Arabidopsis t 0.991 0.994 0.645 8.3e-264
TAIR|locus:2018645721 AT1G43140 [Arabidopsis thalian 0.591 0.610 0.658 2.1e-257
TAIR|locus:2205020732 CUL3B "AT1G69670" [Arabidopsis 0.529 0.538 0.384 4.8e-114
UNIPROTKB|F1RN43761 CUL4A "Uncharacterized protein 0.534 0.522 0.409 2.4e-108
TAIR|locus:2025881374 AT1G59790 [Arabidopsis thalian 0.436 0.868 0.607 9.2e-107
FB|FBgn0261268934 Cul-3 "Cullin-3" [Drosophila m 0.668 0.532 0.308 1.8e-101
TAIR|locus:2162060792 CUL4 "cullin4" [Arabidopsis th 0.509 0.478 0.407 8.7e-98
UNIPROTKB|F1MYD0776 CUL1 "Uncharacterized protein" 0.887 0.850 0.317 4.8e-95
UNIPROTKB|E2R1V2776 CUL1 "Uncharacterized protein" 0.887 0.850 0.317 4.8e-95
TAIR|locus:2132377 CUL1 "cullin 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 3209 (1134.7 bits), Expect = 0., P = 0.
 Identities = 607/740 (82%), Positives = 672/740 (90%)

Query:     5 ERKTIDLEQGWEFMQKGITKLKNILEGLPEPQFSSEDYMMLYTTIYNMCTQKPPHDYSQQ 64
             ERKTIDLEQGW++MQ GITKLK ILEGL EP F SE YMMLYTTIYNMCTQKPPHDYSQQ
Sbjct:     2 ERKTIDLEQGWDYMQTGITKLKRILEGLNEPAFDSEQYMMLYTTIYNMCTQKPPHDYSQQ 61

Query:    65 LYDKYRESFEEYISSTVLPSIREKHDEFMLRELVKRWSNHKVMVRWLSRFFHYLDRYFIA 124
             LYDKYRE+FEEYI+STVLP++REKHDEFMLREL KRWSNHKVMVRWLSRFF+YLDRYFIA
Sbjct:    62 LYDKYREAFEEYINSTVLPALREKHDEFMLRELFKRWSNHKVMVRWLSRFFYYLDRYFIA 121

Query:   125 RRSLPPLNEVGLTCFRDLVYTELNGKVRDAVITLIDQEREGEQIDRALLKNVLDIFVEIG 184
             RRSLPPLNEVGLTCFRDLVY EL+ KV+ AVI L+D+EREGEQIDRALLKNVLDI+VEIG
Sbjct:   122 RRSLPPLNEVGLTCFRDLVYNELHSKVKQAVIALVDKEREGEQIDRALLKNVLDIYVEIG 181

Query:   185 MGQMDYYENDFETAMLKDTAAYYSRKASNWILEDSCPDYMLKAEECLKREKDRVSHYLHS 244
             MGQM+ YE DFE+ ML+DT++YYSRKAS+WI EDSCPDYMLK+EECLK+E++RV+HYLHS
Sbjct:   182 MGQMERYEEDFESFMLQDTSSYYSRKASSWIQEDSCPDYMLKSEECLKKERERVAHYLHS 241

Query:   245 SSEPKLLEKVQHELLSVYANQLLEKEHSGCHALLRDDKVEDLSRMFRLFSKIPRGLDPVS 304
             SSEPKL+EKVQHELL V+A+QLLEKEHSGC ALLRDDKV+DLSRM+RL+ KI RGL+PV+
Sbjct:   242 SSEPKLVEKVQHELLVVFASQLLEKEHSGCRALLRDDKVDDLSRMYRLYHKILRGLEPVA 301

Query:   305 NIFKQHVTAEGTALVKLAEDAASNKKAEKRDVVGLQEQVFVRKVIELHDKYLAYVNDCFQ 364
             NIFKQHVTAEG ALV+ AED A+N+ A    V   QEQV +RKVIELHDKY+ YV +CFQ
Sbjct:   302 NIFKQHVTAEGNALVQQAEDTATNQVANTASV---QEQVLIRKVIELHDKYMVYVTECFQ 358

Query:   365 NHTLFHKSLKEAFEVFCNKGVAGSSSAELLATFCDNILKKGGSEKLSDEAIEEMLEKVVK 424
             NHTLFHK+LKEAFE+FCNK VAGSSSAELLATFCDNILKKGGSEKLSDEAIE+ LEKVVK
Sbjct:   359 NHTLFHKALKEAFEIFCNKTVAGSSSAELLATFCDNILKKGGSEKLSDEAIEDTLEKVVK 418

Query:   425 LLAYISDKDLFAEFYRKKLARRLLFDKSANDDHERSILTKLKQQCGGQFTSKMEGMVTDL 484
             LLAYISDKDLFAEFYRKKLARRLLFD+SANDDHERSILTKLKQQCGGQFTSKMEGMVTDL
Sbjct:   419 LLAYISDKDLFAEFYRKKLARRLLFDRSANDDHERSILTKLKQQCGGQFTSKMEGMVTDL 478

Query:   485 TLARENQTSFEEYLSNNPNANPGIDLTVTVLTTGFWPSYKSFDLNLPAEMVKCVEVFREF 544
             TLARENQ SFE+YL +NP ANPGIDLTVTVLTTGFWPSYKSFD+NLP+EM+KCVEVF+ F
Sbjct:   479 TLARENQNSFEDYLGSNPAANPGIDLTVTVLTTGFWPSYKSFDINLPSEMIKCVEVFKGF 538

Query:   545 YQTKTKHRKLTWIYSLGTCNLLGKFESRTTELIVTTYQASALLLFNSSDRLSYSEIMTQL 604
             Y+TKTKHRKLTWIYSLGTC++ GKF+ +  ELIV+TYQA+ LLLFN++D+LSY+EI+ QL
Sbjct:   539 YETKTKHRKLTWIYSLGTCHINGKFDQKAIELIVSTYQAAVLLLFNTTDKLSYTEILAQL 598

Query:   605 NLSDDDVVRLLHSLSCAKYKILNKEPNTKTISPTDHFEFNSKFTDKMRRIKIPLPPXXXX 664
             NLS +D+VRLLHSLSCAKYKIL KEPNTKT+S  D FEFNSKFTD+MRRIKIPLPP    
Sbjct:   599 NLSHEDLVRLLHSLSCAKYKILLKEPNTKTVSQNDAFEFNSKFTDRMRRIKIPLPPVDER 658

Query:   665 XXXXXXXXXXRRYAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDL 724
                       RRYAIDA+IVRIMKSRKVLGHQQLV ECVEQL RMFKPD KAIKKR+EDL
Sbjct:   659 KKVVEDVDKDRRYAIDAAIVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDL 718

Query:   725 ITRDYLERDKSNPNMFRYLA 744
             ITRDYLERDK NPNMFRYLA
Sbjct:   719 ITRDYLERDKENPNMFRYLA 738
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0031625 "ubiquitin protein ligase binding" evidence=IEA
GO:0000151 "ubiquitin ligase complex" evidence=IPI
GO:0009733 "response to auxin stimulus" evidence=IMP
GO:0009793 "embryo development ending in seed dormancy" evidence=IMP
GO:0005819 "spindle" evidence=IDA
GO:0009524 "phragmoplast" evidence=IDA
GO:0005515 "protein binding" evidence=IPI
GO:0000794 "condensed nuclear chromosome" evidence=IDA
GO:0005737 "cytoplasm" evidence=IDA
GO:0009753 "response to jasmonic acid stimulus" evidence=IMP
GO:0009867 "jasmonic acid mediated signaling pathway" evidence=TAS
GO:0010265 "SCF complex assembly" evidence=IPI
GO:0042752 "regulation of circadian rhythm" evidence=RCA;IMP
GO:0005829 "cytosol" evidence=IDA
GO:0000278 "mitotic cell cycle" evidence=RCA
GO:0006396 "RNA processing" evidence=RCA
GO:0006486 "protein glycosylation" evidence=RCA
GO:0006499 "N-terminal protein myristoylation" evidence=RCA
GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=RCA
GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA
GO:0007062 "sister chromatid cohesion" evidence=RCA
GO:0009790 "embryo development" evidence=RCA
GO:0009880 "embryonic pattern specification" evidence=RCA
GO:0010072 "primary shoot apical meristem specification" evidence=RCA
GO:0010162 "seed dormancy process" evidence=RCA
GO:0010431 "seed maturation" evidence=RCA
GO:0010564 "regulation of cell cycle process" evidence=RCA
GO:0043090 "amino acid import" evidence=RCA
GO:0045595 "regulation of cell differentiation" evidence=RCA
GO:0048316 "seed development" evidence=RCA
GO:0048366 "leaf development" evidence=IMP;RCA
GO:0048825 "cotyledon development" evidence=RCA
GO:0051301 "cell division" evidence=RCA
GO:0010087 "phloem or xylem histogenesis" evidence=IMP
TAIR|locus:2024755 CUL2 "cullin 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2018645 AT1G43140 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2205020 CUL3B "AT1G69670" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|F1RN43 CUL4A "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
TAIR|locus:2025881 AT1G59790 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
FB|FBgn0261268 Cul-3 "Cullin-3" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
TAIR|locus:2162060 CUL4 "cullin4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|F1MYD0 CUL1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2R1V2 CUL1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q13619CUL4A_HUMANNo assigned EC number0.35450.89510.8774yesno
Q94AH6CUL1_ARATHNo assigned EC number0.83510.99050.9986yesno
Q17389CUL1_CAEELNo assigned EC number0.30240.95960.9153yesno
Q54NZ5CUL3_DICDINo assigned EC number0.35210.93540.9050yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query744
pfam00888603 pfam00888, Cullin, Cullin family 0.0
COG5647773 COG5647, COG5647, Cullin, a subunit of E3 ubiquiti 1e-120
smart00182143 smart00182, CULLIN, Cullin 3e-57
pfam1055768 pfam10557, Cullin_Nedd8, Cullin protein neddylatio 6e-28
smart0088468 smart00884, Cullin_Nedd8, Cullin protein neddylati 5e-25
pfam03450103 pfam03450, CO_deh_flav_C, CO dehydrogenase flavopr 0.004
>gnl|CDD|216175 pfam00888, Cullin, Cullin family Back     alignment and domain information 
 Score =  602 bits (1554), Expect = 0.0
 Identities = 264/635 (41%), Positives = 392/635 (61%), Gaps = 33/635 (5%)

Query: 15  WEFMQKGITKLKNILEGLPEPQFSSEDYMMLYTTIYNMCTQKPPHDYSQQLYDKYRESFE 74
           WE +   I ++           FSS DYM LYT +YN      PH   ++LY++ +E  E
Sbjct: 1   WEKLLDAIDQILL-------KSFSSLDYMELYTAVYNYV----PHKLGEKLYNRLKEYLE 49

Query: 75  EYISSTVLPSIREKHDEFMLRELVKRWSNHKVMVRWLSRFFHYLDRYFIARRSLPPLNEV 134
           EY+++ +L SI E  DE +L+   K W+     ++ L+  F YL+RY++ R++L  + E+
Sbjct: 50  EYVAA-LLKSILENDDEVLLKTYYKEWNKFSTSMKILNNIFMYLNRYYVKRKNLDGVYEL 108

Query: 135 GLTCFRDLVYTELNGKVRDAVITLIDQEREGEQIDRALLKNVLDIFVEIGMGQMDYYEND 194
           GL  +R+ ++  +  K+ DA++ LI++ER GE IDR+L+KNVLD+FVE+G+ +++ Y+ D
Sbjct: 109 GLDIWRESLFDPIKDKLIDALLRLIEKERLGEIIDRSLIKNVLDMFVELGLDKLEVYKED 168

Query: 195 FETAMLKDTAAYYSRKASNWILEDSCPDYMLKAEECLKREKDRVSHYLHSSSEPKLLEKV 254
           FE   L+ T+ +Y +++S ++ E+S  +YM K EE L+ E++RV  YLHSS+E KL+E  
Sbjct: 169 FEKPFLEATSEFYKKESSKFLQENSVSEYMKKVEERLEEEEERVRLYLHSSTEKKLIEVC 228

Query: 255 QHELLSVYANQLLEKEHSGCHALLRDDKVEDLSRMFRLFSKIPRGLDPVSNIFKQHVTAE 314
           +  L+  +   L    HS    LL ++K+EDL RM+RL S++P GL+P+   F++H+  E
Sbjct: 229 EKVLIEKHLEFL----HSEFQRLLDNEKIEDLRRMYRLLSRVPNGLEPLRKYFEKHIKKE 284

Query: 315 GTALVKLAEDAASNKKAEKRDVVGLQEQVFVRKVIELHDKYLAYVNDCFQNHTLFHKSLK 374
           G A V                 V    + +V+ ++ELHDKY + VN+ F N  LF  +L 
Sbjct: 285 GLAAVSDLA-------------VETDPKDYVQTLLELHDKYDSLVNEAFNNDALFLNALD 331

Query: 375 EAFEVFCNKGVAGSSSAELLATFCDNILKKGGSEKLSDEAIEEMLEKVVKLLAYISDKDL 434
           +AFE F N     S SAELLA +CD++LKK   + L++E +EE L+K++ L  YI DKD+
Sbjct: 332 KAFEEFINSNS--SKSAELLAKYCDSLLKK-SLKGLNEEELEEKLDKIIVLFKYIEDKDV 388

Query: 435 FAEFYRKKLARRLLFDKSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQTSF 494
           F +FYRK LA+RLL   SA+DD E+ ++ KLKQ+CG QFTSK+E M  D++L++E   SF
Sbjct: 389 FEKFYRKMLAKRLLNGTSASDDAEKKMIEKLKQECGYQFTSKLERMFKDISLSKELNNSF 448

Query: 495 EEYLSNNPNANP-GIDLTVTVLTTGFWPSYKSFDLNLPAEMVKCVEVFREFYQTKTKHRK 553
           + +L NN +    GIDL+V VL+TGFWP+  +   +LP E+ K +E F EFY  K   RK
Sbjct: 449 KNHLENNLDLLSEGIDLSVLVLSTGFWPTLPTEPFSLPEELEKALEKFEEFYSKKHSGRK 508

Query: 554 LTWIYSLGTCNLLGKFESRTTELIVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVR 613
           LTW++SLG   L  +F  +T EL V+TYQ + LLLFN  + L+  E+     LSDD + R
Sbjct: 509 LTWLHSLGRGELKAEFNDKTYELTVSTYQMAVLLLFNDQEELTVEELSEATGLSDDLLRR 568

Query: 614 LLHSLSCAKYKILNKEPNTKTISPTDHFEFNSKFT 648
            L SL  AK  +L K P  +  SP   F  NS FT
Sbjct: 569 TLQSLLKAKVLLLTKIPKGEEFSPNTVFSLNSDFT 603

Length = 603
>gnl|CDD|227934 COG5647, COG5647, Cullin, a subunit of E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|214545 smart00182, CULLIN, Cullin Back     alignment and domain information
>gnl|CDD|204512 pfam10557, Cullin_Nedd8, Cullin protein neddylation domain Back     alignment and domain information
>gnl|CDD|214883 smart00884, Cullin_Nedd8, Cullin protein neddylation domain Back     alignment and domain information
>gnl|CDD|217566 pfam03450, CO_deh_flav_C, CO dehydrogenase flavoprotein C-terminal domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 744
KOG2166725 consensus Cullins [Cell cycle control, cell divisi 100.0
COG5647773 Cullin, a subunit of E3 ubiquitin ligase [Posttran 100.0
KOG2284728 consensus E3 ubiquitin ligase, Cullin 2 component 100.0
KOG2167661 consensus Cullins [Cell cycle control, cell divisi 100.0
PF00888588 Cullin: Cullin family; InterPro: IPR001373 Cullins 100.0
KOG2285777 consensus E3 ubiquitin ligase, Cullin 1 component 100.0
smart00182142 CULLIN Cullin. 100.0
KOG2165765 consensus Anaphase-promoting complex (APC), subuni 99.95
PF1055768 Cullin_Nedd8: Cullin protein neddylation domain; I 99.76
PF08539158 HbrB: HbrB-like; InterPro: IPR013745 HbrB is invol 97.24
TIGR0161095 phage_O_Nterm phage replication protein O, N-termi 93.24
KOG2167661 consensus Cullins [Cell cycle control, cell divisi 92.15
PF0933952 HTH_IclR: IclR helix-turn-helix domain; InterPro: 91.59
PF1341248 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 91.36
PF0208283 Rrf2: Transcriptional regulator; InterPro: IPR0009 90.79
PF1280262 MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP 90.06
PF0822057 HTH_DeoR: DeoR-like helix-turn-helix domain; Inter 89.11
PF0104759 MarR: MarR family; InterPro: IPR000835 The MarR-ty 87.41
PF1346368 HTH_27: Winged helix DNA-binding domain; PDB: 3GFL 86.26
PF0102247 HTH_5: Bacterial regulatory protein, arsR family; 85.87
PF1284061 HTH_20: Helix-turn-helix domain; PDB: 1ULY_A 2CWE_ 85.52
TIGR02337118 HpaR homoprotocatechuate degradation operon regula 85.06
PRK11512144 DNA-binding transcriptional repressor MarR; Provis 82.81
PF0827955 HTH_11: HTH domain; InterPro: IPR013196 Winged hel 81.58
PF0901269 FeoC: FeoC like transcriptional regulator; InterPr 80.19
>KOG2166 consensus Cullins [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information 
Probab=100.00  E-value=4e-120  Score=1023.68  Aligned_cols=719  Identities=66%  Similarity=1.088  Sum_probs=670.9

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhhhhcCCCCCCchHHHHHHHHHHHHHHHHhcccch
Q 004583            5 ERKTIDLEQGWEFMQKGITKLKNILEGLPEPQFSSEDYMMLYTTIYNMCTQKPPHDYSQQLYDKYRESFEEYISSTVLPS   84 (744)
Q Consensus         5 ~~~~~~f~~~W~~l~~ai~~i~~il~~~~~~~~s~~~y~~lY~~vy~lc~~~~~~~~~e~LY~~l~~~l~~~l~~~v~~~   84 (744)
                      .+.+.+|+..|+.++++++++.+..++-+.+.++.-+++.+|+++|++|+++++.+..++||+++++++.+|+.+.+.+.
T Consensus         4 ~~~~~~~~~~w~~~~~~~~~l~~~~~~~s~~~~~~~~~~~ly~t~~~~~~~k~~~~~~~~lY~~l~~~~~~yl~~~~~~~   83 (725)
T KOG2166|consen    4 APKEIDLEVGWSYIETGITKLKRIIEGLSEPAFEQYQFMYLYTTIYNMCLQKPPHDYSQQLYDKYREVIEEYLIQTVLPA   83 (725)
T ss_pred             cccccchhccHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence            34678999999999999999988876444445777889999999999999996666669999999999999999987777


Q ss_pred             hhccCchHHHHHHHHHHHHHHHHHHHHHHhhchhchhhhhcC-CCCcHHHHH-HHHHHHHHHH-hhhHHHHHHHHHHHHH
Q 004583           85 IREKHDEFMLRELVKRWSNHKVMVRWLSRFFHYLDRYFIARR-SLPPLNEVG-LTCFRDLVYT-ELNGKVRDAVITLIDQ  161 (744)
Q Consensus        85 l~~~~~~~~L~~~~~~W~~~~~~~~~l~~vf~YLdr~yv~~~-~~~~i~~l~-l~~f~~~v~~-~l~~~l~~~ll~~I~~  161 (744)
                      .....++.+|..+...|.+|+.++.+++++|.||||+||.+. +..++.+++ +.+|+..++. ++.++++++++.+|..
T Consensus        84 ~~~~~~~~~l~~~~~~W~~~~~~~~~~~~i~~YldR~~v~~~~~~~~v~~~~~l~l~r~~v~~~~~~~~~~~all~lI~~  163 (725)
T KOG2166|consen   84 LREKHDEYMLRELAKRWNNHKVLVRWLSDFFMYLDRYYVAQSRRKLPTLNEVGLTCFRDLVYKFEMQSEAIDALLALIHK  163 (725)
T ss_pred             HHhcCcHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhcCCCCcccceeeEEeehHHHHHHHHHHHHHHHHHHHHh
Confidence            777788899999999999999999999999999999999876 666777766 8888888877 5999999999999999


Q ss_pred             HhcCCccCHHHHHHHHHHHHHhccCchhchHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHchh
Q 004583          162 EREGEQIDRALLKNVLDIFVEIGMGQMDYYENDFETAMLKDTAAYYSRKASNWILEDSCPDYMLKAEECLKREKDRVSHY  241 (744)
Q Consensus       162 ~R~g~~id~~~lk~~i~~l~~l~~~~~~~Y~~~FE~~~L~~t~~yY~~~~~~~l~~~~~~~Yl~~v~~~l~eE~~r~~~~  241 (744)
                      +|.|+.||+..|+++++++..+|.+..++|...||++|++.|..||..+++.|+...++++|+.+|+.++.+|..|+..|
T Consensus       164 eR~ge~in~~~i~~~~~~~~~lg~~~~s~Y~~~Fe~~fl~~t~~~y~~~~~~~l~~~~~~~yl~k~e~~l~~e~~r~~~y  243 (725)
T KOG2166|consen  164 EREGEQIDRELIRNVIDVYVELGMGELSFYEEDFERKFLQDTASYYSEEASEWLEENSCLDYLKKIEECLKEERERVTHY  243 (725)
T ss_pred             hcccccccHHHHhhHHHHHHhccccchhHHHHHhHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999999988999999999999999999999999999998899999999999999999999999


Q ss_pred             cCCCcHHHHHHHHHHHHHHHHHHHHHHhchhhhhhhhhcCcHHHHHHHHHhhccCCCChHhHHHHHHHHHHHHHHHHHHH
Q 004583          242 LHSSSEPKLLEKVQHELLSVYANQLLEKEHSGCHALLRDDKVEDLSRMFRLFSKIPRGLDPVSNIFKQHVTAEGTALVKL  321 (744)
Q Consensus       242 l~~~t~~kl~~~l~~~LI~~~~~~ll~~~~sg~~~ll~~~~~~~L~~ly~L~~~~~~~l~~l~~~~~~~i~~~g~~~~~~  321 (744)
                      ++..+.+++.+.+...++..+++.++++.++|+..|+.+++.++|.+||+|+++++.|++.+++.++.|++.+|..++..
T Consensus       244 l~~~~e~~~~~~le~~~~~~~~~~~~e~~~sgf~~~l~~~~~edl~~my~l~~r~~~gl~~l~~~~~~~~~~eg~~l~~r  323 (725)
T KOG2166|consen  244 LHSSTEPKLVEVVEDELIVVFADDLEEMEHSGFRALLNDDKLEDLSRMYRLFRRILPGLEPLASVFKQHVREEGNALVAR  323 (725)
T ss_pred             hhhcccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHhccchhHHHHHHHHhhcccccchhHHHHHHHHHHhhHHHHhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999888876


Q ss_pred             HHHHhhhhhhhhccccccchHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Q 004583          322 AEDAASNKKAEKRDVVGLQEQVFVRKVIELHDKYLAYVNDCFQNHTLFHKSLKEAFEVFCNKGVAGSSSAELLATFCDNI  401 (744)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~l~~~~F~~~~~f~~~l~~af~~~~n~~~~~~~~~e~La~y~d~~  401 (744)
                      .....           ..+|..++..+++++++|..++..||.++..|..+++.||..|+|.+...  .+|+||+|||.+
T Consensus       324 ~~~~~-----------~~~~~~~v~~~l~~~~~~~~~~~~~f~~d~~f~~~ld~a~~~fin~n~~~--~~E~la~y~D~~  390 (725)
T KOG2166|consen  324 PAETA-----------ATNPVEYVQGLLELHDKYKVLVKECFANDTLFKKALDAAFEEFINKNVAT--SAELLATYCDDI  390 (725)
T ss_pred             hhhhc-----------ccchHHHHhccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHcccCCC--cHHHHHHHhHHH
Confidence            54321           14689999999999999999999999999999999999999999998632  279999999999


Q ss_pred             hhcCCCCCCChHHHHHHHHHHhhhhccccChHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHhhcChhhHhHHHHH
Q 004583          402 LKKGGSEKLSDEAIEEMLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDKSANDDHERSILTKLKQQCGGQFTSKMEGMV  481 (744)
Q Consensus       402 lk~~~~~~~~~~~~~~~l~~i~~lf~~l~~Kd~F~~~Y~~~La~RLL~~~s~~~~~E~~~i~~Lk~~~G~~~~~kl~~Ml  481 (744)
                      +|++ ..+.++++++..+++++.+|+|+.+||+|+.+|+++||||||+++|.|+++|+.||.+|+++||.+||.+|++|+
T Consensus       391 lkk~-~k~~~e~~ie~~l~~v~~l~~yisdKdvF~~~Ykk~lakRLl~~~S~sdd~E~~mIsklk~~~g~~~T~kL~~Mf  469 (725)
T KOG2166|consen  391 LKKG-SKKLSDEAIEDTLEKVVKLLKYISDKDVFAEFYKKVLARRLLFDRSASDDHEKSLITKLKNLCGEQFTSKLEGMF  469 (725)
T ss_pred             hccc-ccCCchhHHHhHhhcceeeeeeccHHHHHHHHHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHhHHHHHHHhhc
Confidence            9995 467789999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhHHHHHHHHHHHHHHHhcCCCCCCCcceEEEEeecCCCCCCCCCCccCChhHHHHHHHHHHHHHhcCCCeeEEeccCcc
Q 004583          482 TDLTLARENQTSFEEYLSNNPNANPGIDLTVTVLTTGFWPSYKSFDLNLPAEMVKCVEVFREFYQTKTKHRKLTWIYSLG  561 (744)
Q Consensus       482 ~D~~~S~~l~~~f~~~~~~~~~~~~~~~~~~~vLt~~~WP~~~~~~~~lP~~l~~~~~~f~~~Y~~k~~~R~L~w~~~l~  561 (744)
                      +|+..|++++..|+++.  +.....+++|.|.|||.|+||.+++.++.||++|.++++.|..||..+|+||+|.|+|++|
T Consensus       470 ~D~~~s~~l~~~F~~~~--~~~~~~~~df~v~VLt~g~WP~~~~~~~~LP~el~~~~e~F~~~Y~~kh~gR~L~w~~~l~  547 (725)
T KOG2166|consen  470 TDLTLSRELQTAFADYA--NYSANLGIDFTVTVLTTGFWPSYKSTDINLPSEMSDCVEMFKGFYATKHNGRRLTWIYSLG  547 (725)
T ss_pred             ccHHHHHHHHHHHHhhh--chhccCCCceeEEEeecCCcCCccCCCCCCChhHHHHHHHHHHHHhhccCCCeeeeeeccC
Confidence            99999999999999871  2222357999999999999999888889999999999999999999999999999999999


Q ss_pred             eEEEEeEecCeeEEEEEcHHHHHHHHhhcCCCCcCHHHHHHHhCCCHHHHHHHHhHhhhccccccccCCCCCCCCCCCeE
Q 004583          562 TCNLLGKFESRTTELIVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEPNTKTISPTDHF  641 (744)
Q Consensus       562 ~~~i~~~~~~~~~~l~~s~~Q~~iLllFn~~~~~t~~ei~~~t~~~~~~l~~~L~~L~~~k~~iL~~~~~~~~i~~~~~~  641 (744)
                      .|+|.++|.+++++++||++||+||++||+.+.+|+++|.+.|+++.+++.++|+||++.|.+++.. |.++. ++++.|
T Consensus       548 ~~ei~~~~~~~~~~l~vst~Qm~VLlLFN~~d~lt~~eI~~~t~i~~~~l~~~L~Sl~~~K~~v~~~-~~s~~-~~~~~~  625 (725)
T KOG2166|consen  548 TGEINGKFDKKTVELQVSTYQMAVLLLFNNTEKLTYEEILEQTNLGHEDLARLLQSLSCLKYKILLK-PMSRT-SPNDEF  625 (725)
T ss_pred             ceEEEEEecCceEEEEEEhHHHHHHHHccchhhccHHHHHHHhCCCHHHHHHHHHHHHHHhHhhccC-ccccC-CCCcEE
Confidence            9999999999999999999999999999999999999999999999999999999999888777766 66666 789999


Q ss_pred             EeccCCCCCCcceeccCCChhhhhhHHHhHHHhhhhhhceeeeecccCCCCCChHHHHHHHHHHhcCCCCCChhHHHHHH
Q 004583          642 EFNSKFTDKMRRIKIPLPPVDEKKKVIEDVDKDRRYAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRI  721 (744)
Q Consensus       642 ~~N~~f~~~~~~i~i~~~~~~e~~~~~~~~~~~r~~~i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~I  721 (744)
                      .+|.+|+++.+|++++.++..+.+++.+.+++||+..|+||||||||+||.+.|++|+.||++|++++|.|++.+||+||
T Consensus       626 ~~N~~f~sk~~Rv~i~~~~~~e~~~~~~~ve~dRk~~i~AaIVRIMK~rK~l~h~~Lv~Ev~~ql~~RF~p~v~~IKk~I  705 (725)
T KOG2166|consen  626 AFNSKFTSKMRRVKIPLPPMDERKKVVEDVDKDRKYAIDAAIVRIMKSRKVLGHQQLVSEVVEQLSERFKPDIKMIKKRI  705 (725)
T ss_pred             EeeccccCcceeeccCCCCchhHHHHHhhhhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence            99999999999999998888888888999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhhhhhcccCCCCCCceee
Q 004583          722 EDLITRDYLERDKSNPNMFRY  742 (744)
Q Consensus       722 e~Liekeyi~r~~~d~~~y~Y  742 (744)
                      |.|||||||+|| +|+++|.|
T Consensus       706 e~LIEkeYleR~-~~~~~Y~Y  725 (725)
T KOG2166|consen  706 EDLIEREYLERD-ENPNIYRY  725 (725)
T ss_pred             HHHHHHHHHhcc-CCCCcccC
Confidence            999999999999 89999998

>COG5647 Cullin, a subunit of E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2284 consensus E3 ubiquitin ligase, Cullin 2 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2167 consensus Cullins [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF00888 Cullin: Cullin family; InterPro: IPR001373 Cullins are a family of hydrophobic proteins that act as scaffolds for ubiquitin ligases (E3) Back     alignment and domain information
>KOG2285 consensus E3 ubiquitin ligase, Cullin 1 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>smart00182 CULLIN Cullin Back     alignment and domain information
>KOG2165 consensus Anaphase-promoting complex (APC), subunit 2 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF10557 Cullin_Nedd8: Cullin protein neddylation domain; InterPro: IPR019559 This is the neddylation site of cullin proteins, which are a family of structurally related proteins containing an evolutionarily conserved cullin domain Back     alignment and domain information
>PF08539 HbrB: HbrB-like; InterPro: IPR013745 HbrB is involved in hyphal growth and polarity [] Back     alignment and domain information
>TIGR01610 phage_O_Nterm phage replication protein O, N-terminal domain Back     alignment and domain information
>KOG2167 consensus Cullins [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF09339 HTH_IclR: IclR helix-turn-helix domain; InterPro: IPR005471 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities Back     alignment and domain information
>PF13412 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 1I1G_B 2IA0_B 3I4P_A 2GQQ_A 2L4A_A 2CFX_B 2DBB_B 2EFO_A 2EFQ_A 2PN6_A Back     alignment and domain information
>PF02082 Rrf2: Transcriptional regulator; InterPro: IPR000944 The following uncharacterised bacterial proteins have been shown to be evolutionary related, Desulfovibrio vulgaris protein Rrf2; Escherichia coli hypothetical proteins yfhP and yjeB; Bacillus subtilis hypothetical proteins yhdE, yrzC and ywgB; Mycobacterium tuberculosis hypothetical protein Rv1287; and Synechocystis sp Back     alignment and domain information
>PF12802 MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP4_B 3KP2_A 3KP5_A 3KP3_B 3KP7_A 3NQO_B 3K0L_B Back     alignment and domain information
>PF08220 HTH_DeoR: DeoR-like helix-turn-helix domain; InterPro: IPR001034 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism Back     alignment and domain information
>PF01047 MarR: MarR family; InterPro: IPR000835 The MarR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 135 amino acids present in transcription regulators of the MarR/SlyA family, involved in the development of antibiotic resistance Back     alignment and domain information
>PF13463 HTH_27: Winged helix DNA-binding domain; PDB: 3GFL_A 2YR2_B 3GFM_A 3GFJ_A 3GF2_A 3GEZ_A 2GXG_A 3GFI_A 2EB7_A Back     alignment and domain information
>PF01022 HTH_5: Bacterial regulatory protein, arsR family; InterPro: IPR001845 Bacterial transcription regulatory proteins that bind DNA via a helix-turn-helix (HTH) motif can be grouped into families on the basis of sequence similarities Back     alignment and domain information
>PF12840 HTH_20: Helix-turn-helix domain; PDB: 1ULY_A 2CWE_A 1Y0U_B 2QUF_B 2QLZ_C 2OQG_B 2ZKZ_C 3PQK_A 3PQJ_D 3F6O_B Back     alignment and domain information
>TIGR02337 HpaR homoprotocatechuate degradation operon regulator, HpaR Back     alignment and domain information
>PRK11512 DNA-binding transcriptional repressor MarR; Provisional Back     alignment and domain information
>PF08279 HTH_11: HTH domain; InterPro: IPR013196 Winged helix DNA-binding proteins share a related winged helix-turn-helix DNA-binding motif, where the "wings", or loops, are small beta-sheets Back     alignment and domain information
>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query744
4a0k_A742 Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp 1e-115
2hye_C759 Crystal Structure Of The Ddb1-cul4a-rbx1-sv5v Compl 1e-115
4a0c_C741 Structure Of The Cand1-Cul4b-Rbx1 Complex Length = 1e-109
4a0l_E726 Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp 1e-108
1u6g_A776 Crystal Structure Of The Cand1-Cul1-Roc1 Complex Le 2e-98
1ldj_A760 Structure Of The Cul1-rbx1-skp1-f Boxskp2 Scf Ubiqu 1e-97
1ldk_B366 Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiqu 2e-53
3rtr_A368 A Ring E3-Substrate Complex Poised For Ubiquitin-Li 4e-51
1ldk_A396 Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiqu 6e-39
4ap2_B410 Crystal Structure Of The Human Klhl11-cul3 Complex 3e-37
4apf_B388 Crystal Structure Of The Human Klhl11-cul3 Complex 4e-37
4f52_A282 Structure Of A Glomulin-Rbx1-Cul1 Complex Length = 4e-35
4eoz_B364 Crystal Structure Of The Spop Btb Domain Complexed 2e-33
3dpl_C382 Structural Insights Into Nedd8 Activation Of Cullin 2e-32
3dqv_C382 Structural Insights Into Nedd8 Activation Of Cullin 6e-29
4a64_A354 Crystal Structure Of The N-Terminal Domain Of Human 2e-25
2wzk_A391 Structure Of The Cul5 N-Terminal Domain At 2.05a Re 9e-20
2do7_A101 Solution Structure Of The Winged Helix-Turn-Helix M 1e-14
3tdu_C77 N-Terminal Acetylation Acts As An Avidity Enhancer 6e-11
1iuy_A92 Solution Structure Of The Cullin-3 Homologue Length 2e-10
3o6b_B76 A Dual E3 Mechanism For Rub1 Ligation To Cdc53: Dcn 8e-06
3o2p_E88 A Dual E3 Mechanism For Rub1 Ligation To Cdc53: Dcn 1e-05
>pdb|4A0K|A Chain A, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic Site Containing Dna-Duplex Length = 742 Back     alignment and structure 
Iteration: 1

 Score =  413 bits (1062), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 246/708 (34%), Positives = 392/708 (55%), Gaps = 42/708 (5%)
Query: 45  LYTTIYNMCTQKPPHDYSQQLYDKYRESFEEYISSTVLPSIREKHDEFM-LRELVKRWSN 103
           LY  + N+C+    H  S  LY + R++ E+++ + +LP   +  D  + L+++   W +
Sbjct: 69  LYQAVENLCS----HKVSPMLYKQLRQACEDHVQAQILPFREDSLDSVLFLKKINTCWQD 124
Query: 104 HKVMVRWLSRFFHYLDRYFIARRS-LPPLNEVGLTCFRDLVYTE--LNGKVRDAVITLID 160
           H   +  +   F +LDR ++ + S LP + ++GL  FR  + ++  +  K  D ++ LI+
Sbjct: 125 HCRQMIMIRSIFLFLDRTYVLQNSTLPSIWDMGLELFRTHIISDKMVQSKTIDGILLLIE 184
Query: 161 QEREGEQIDRALLKNVLDIFVEIGMGQMDYYENDFETAMLKDTAAYYSRKASNWILEDSC 220
           +ER GE +DR+LL+++L +     +  +  Y++ FE   L++T   Y+ +    + E   
Sbjct: 185 RERSGEAVDRSLLRSLLGM-----LSDLQVYKDSFELKFLEETNCLYAAEGQRLMQEREV 239
Query: 221 PDYMLKAEECLKREKDRVSHYLHSSSEPKLLEKVQHELLSVYANQLLEKEHSGCHALLRD 280
           P+Y+    + L+ E DRV  YL  S++  L+  V+ +LL  +   +L+K   G   LL +
Sbjct: 240 PEYLNHVSKRLEEEGDRVITYLDHSTQKPLIACVEKQLLGEHLTAILQK---GLDHLLDE 296
Query: 281 DKVEDLSRMFRLFSKIPRGLDPVSNIFKQHVTAEGTALVKLAEDAASNKKAEKRDVVGLQ 340
           ++V DL++M++LFS++  G   +   + +++   GTA+V   E                +
Sbjct: 297 NRVPDLAQMYQLFSRVRGGQQALLQHWSEYIKTFGTAIVINPE----------------K 340
Query: 341 EQVFVRKVIELHDKYLAYVNDCFQNHTLFHKSLKEAFEVFCNKGVAGSSSAELLATFCDN 400
           ++  V+ +++  DK    +  CFQ +  F   +KE+FE F NK    +  AEL+A   D+
Sbjct: 341 DKDMVQDLLDFKDKVDHVIEVCFQKNERFVNLMKESFETFINK--RPNKPAELIAKHVDS 398
Query: 401 ILKKGGSEKLSDEAIEEMLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDKSANDDHERS 460
            L+ G  E  +DE +E  L+K++ L  +I  KD+F  FY+K LA+RLL  KSA+ D E+S
Sbjct: 399 KLRAGNKEA-TDEELERTLDKIMILFRFIHGKDVFEAFYKKDLAKRLLVGKSASVDAEKS 457
Query: 461 ILTKLKQQCGGQFTSKMEGMVTDLTLARENQTSFEEYLSNNPNANPGIDLTVTVLTTGFW 520
           +L+KLK +CG  FTSK+EGM  D+ L+++    F++++ N  ++ P IDLTV +LT G+W
Sbjct: 458 MLSKLKHECGAAFTSKLEGMFKDMELSKDIMVHFKQHMQNQSDSGP-IDLTVNILTMGYW 516
Query: 521 PSYKSFDLNLPAEMVKCVEVFREFYQTKTKHRKLTWIYSLGTCNLLGKFESRTTELIVTT 580
           P+Y   +++L  EM+K  EVF+ FY  K   RKL W  +LG   L  +F+    E  V+ 
Sbjct: 517 PTYTPMEVHLTPEMIKLQEVFKAFYLGKHSGRKLQWQTTLGHAVLKAEFKEGKKEFQVSL 576
Query: 581 YQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEPNTKTISPTDH 640
           +Q   LL+FN  D  S+ EI     + D ++ R L SL+C K ++L K P  K +   D 
Sbjct: 577 FQTLVLLMFNEGDGFSFEEIKMATGIEDSELRRTLQSLACGKARVLIKSPKGKEVEDGDK 636
Query: 641 FEFNSKFTDKMRRIKIPL----PPXXXXXXXXXXXXXXRRYAIDASIVRIMKSRKVLGHQ 696
           F FN +F  K+ RIKI                      R+Y IDA+IVRIMK RK LGH 
Sbjct: 637 FIFNGEFKHKLFRIKINQIQMKETVEEQVSTTERVFQDRQYQIDAAIVRIMKMRKTLGHN 696
Query: 697 QLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSNPNMFRYLA 744
            LV E   QL    KP    +KKRIE LI RDY+ERDK NPN + Y+A
Sbjct: 697 LLVSELYNQLKFPVKPG--DLKKRIESLIDRDYMERDKDNPNQYHYVA 742
>pdb|2HYE|C Chain C, Crystal Structure Of The Ddb1-cul4a-rbx1-sv5v Complex Length = 759 Back     alignment and structure
>pdb|4A0C|C Chain C, Structure Of The Cand1-Cul4b-Rbx1 Complex Length = 741 Back     alignment and structure
>pdb|4A0L|E Chain E, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic Site Containing Dna-Duplex Length = 726 Back     alignment and structure
>pdb|1U6G|A Chain A, Crystal Structure Of The Cand1-Cul1-Roc1 Complex Length = 776 Back     alignment and structure
>pdb|1LDJ|A Chain A, Structure Of The Cul1-rbx1-skp1-f Boxskp2 Scf Ubiquitin Ligase Complex Length = 760 Back     alignment and structure
>pdb|1LDK|B Chain B, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin Ligase Complex Length = 366 Back     alignment and structure
>pdb|3RTR|A Chain A, A Ring E3-Substrate Complex Poised For Ubiquitin-Like Protein Transfer: Structural Insights Into Cullin-Ring Ligases Length = 368 Back     alignment and structure
>pdb|1LDK|A Chain A, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin Ligase Complex Length = 396 Back     alignment and structure
>pdb|4AP2|B Chain B, Crystal Structure Of The Human Klhl11-cul3 Complex At 2.8a Resolution Length = 410 Back     alignment and structure
>pdb|4APF|B Chain B, Crystal Structure Of The Human Klhl11-cul3 Complex At 3.1a Resolution Length = 388 Back     alignment and structure
>pdb|4F52|A Chain A, Structure Of A Glomulin-Rbx1-Cul1 Complex Length = 282 Back     alignment and structure
>pdb|4EOZ|B Chain B, Crystal Structure Of The Spop Btb Domain Complexed With The Cul3 N- Terminal Domain Length = 364 Back     alignment and structure
>pdb|3DPL|C Chain C, Structural Insights Into Nedd8 Activation Of Cullin-Ring Ligases: Conformational Control Of Conjugation Length = 382 Back     alignment and structure
>pdb|3DQV|C Chain C, Structural Insights Into Nedd8 Activation Of Cullin-Ring Ligases: Conformational Control Of Conjugation Length = 382 Back     alignment and structure
>pdb|4A64|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Cul4b At 2.57a Resolution Length = 354 Back     alignment and structure
>pdb|2WZK|A Chain A, Structure Of The Cul5 N-Terminal Domain At 2.05a Resolution Length = 391 Back     alignment and structure
>pdb|2DO7|A Chain A, Solution Structure Of The Winged Helix-Turn-Helix Motif Of Human Cul-4b Length = 101 Back     alignment and structure
>pdb|3TDU|C Chain C, N-Terminal Acetylation Acts As An Avidity Enhancer Within An Interconnected Multiprotein Complex: Structure Of A Human Cul1whb- Dcn1p-Acetylated Ubc12n Complex Length = 77 Back     alignment and structure
>pdb|1IUY|A Chain A, Solution Structure Of The Cullin-3 Homologue Length = 92 Back     alignment and structure
>pdb|3O6B|B Chain B, A Dual E3 Mechanism For Rub1 Ligation To Cdc53: Dcn1(P)-Cdc53(Whb) Low Resolution Length = 76 Back     alignment and structure
>pdb|3O2P|E Chain E, A Dual E3 Mechanism For Rub1 Ligation To Cdc53: Dcn1(P)-Cdc53(Whb) Length = 88 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query744
1ldj_A760 Cullin homolog 1, CUL-1; cullin, ROC1, HRT1, zinc 0.0
2hye_C759 Cullin-4A, CUL-4A; beta propeller, ring finger, zi 0.0
3dpl_C382 Cullin-5; ubiquitin, NEDD8, cullin, HOST-virus int 1e-112
2wzk_A391 Cullin-5, CUL-5; UBL conjugation pathway, HIV, pho 8e-98
4ap2_B410 Cullin-3, CUL-3; ubiquitination, E3 ligase, cell c 3e-97
4eoz_B364 Cullin-3, CUL-3; E3 ubiquitin ligase, nucleus, pro 1e-93
4a64_A354 Cullin-4B, CUL4B, CUL-4B; cell cycle; 2.57A {Homo 3e-83
1iuy_A92 Cullin-3 homologue; winged helix, structural genom 8e-30
3tdu_C77 Cullin-1, CUL-1; E2:E3, ligase-protein binding com 2e-29
2do7_A101 Cullin-4B, CUL-4B; helix-turn-helix motif, structu 4e-28
3o2p_E88 Cell division control protein 53; ligase, cell cyc 6e-27
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-15
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-14
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-08
>1ldj_A Cullin homolog 1, CUL-1; cullin, ROC1, HRT1, zinc ring finger, ligase, ubiquitin, ubiquitination, SCF; 3.00A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 1u6g_A 1ldk_A 1ldk_B 3rtr_A Length = 760 Back     alignment and structure
 Score =  659 bits (1700), Expect = 0.0
 Identities = 234/785 (29%), Positives = 408/785 (51%), Gaps = 76/785 (9%)

Query: 11  LEQGWEFMQKGITKLKNILEGLPEPQFSSEDYMMLYTTIYNMCTQKPPHDYSQ------- 63
           L+Q W+ ++ GI ++            +   YM LYT +YN CT     + ++       
Sbjct: 1   LDQIWDDLRAGIQQVYT------RQSMAKSRYMELYTHVYNYCTSVHQSNQARGAGVPPS 54

Query: 64  ----------------QLYDKYRESFEEYISSTVLPSIREKHDEFMLRELVKRWSNHKVM 107
                           +LY + +E  + Y+++ +L    +  DE +L+   ++W +++  
Sbjct: 55  KSKKGQTPGGAQFVGLELYKRLKEFLKNYLTN-LLKDGEDLMDESVLKFYTQQWEDYRFS 113

Query: 108 VRWLSRFFHYLDRYFIAR------RSLPPLNEVGLTCFRDLVYTELNGKVRDAVITLIDQ 161
            + L+    YL+R+++ R      + +  +  + L  +RD ++  LN +V +AV+ LI++
Sbjct: 114 SKVLNGICAYLNRHWVRRECDEGRKGIYEIYSLALVTWRDCLFRPLNKQVTNAVLKLIEK 173

Query: 162 EREGEQIDRALLKNVLDIFVEIGMGQMD---------YYENDFETAMLKDTAAYYSRKAS 212
           ER GE I+  L+  V+  +VE+G+ + D          Y+  FE+  L DT  +Y+R+++
Sbjct: 174 ERNGETINTRLISGVVQSYVELGLNEDDAFAKGPTLTVYKESFESQFLADTERFYTREST 233

Query: 213 NWILEDSCPDYMLKAEECLKREKDRVSHYLHSSSEPKLLEKVQHELLSVYANQLLEKEHS 272
            ++ ++   +YM KAE  L  E+ RV  YLH S++ +L  K +  L+  +    LE  H+
Sbjct: 234 EFLQQNPVTEYMKKAEARLLEEQRRVQVYLHESTQDELARKCEQVLIEKH----LEIFHT 289

Query: 273 GCHALLRDDKVEDLSRMFRLFSKIPRGLDPVSNIFKQHVTAEGTALVKLAEDAASNKKAE 332
               LL  DK EDL RM+ L S+I  GL  +  + + H+  +G A ++   +AA N    
Sbjct: 290 EFQNLLDADKNEDLGRMYNLVSRIQDGLGELKKLLETHIHNQGLAAIEKCGEAALN---- 345

Query: 333 KRDVVGLQEQVFVRKVIELHDKYLAYVNDCFQNHTLFHKSLKEAFEVF------CNKGVA 386
                    +++V+ V+++H KY A V   F N   F  +L +A   F           +
Sbjct: 346 -------DPKMYVQTVLDVHKKYNALVMSAFNNDAGFVAALDKACGRFINNNAVTKMAQS 398

Query: 387 GSSSAELLATFCDNILKKGGSEKLSDEAIEEMLEKVVKLLAYISDKDLFAEFYRKKLARR 446
            S S ELLA +CD++LKK  S+   +  +E+ L +V+ +  YI DKD+F +FY K LA+R
Sbjct: 399 SSKSPELLARYCDSLLKKS-SKNPEEAELEDTLNQVMVVFKYIEDKDVFQKFYAKMLAKR 457

Query: 447 LLFDKSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQTSFEEYLSNNPNANP 506
           L+   SA+DD E S+++KLKQ CG ++TSK++ M  D+ ++++    F+++L+N+     
Sbjct: 458 LVHQNSASDDAEASMISKLKQACGFEYTSKLQRMFQDIGVSKDLNEQFKKHLTNSEP--L 515

Query: 507 GIDLTVTVLTTGFWPSYKSFDLNLPAEMVKCVEVFREFYQTKTKHRKLTWIYSLGTCNLL 566
            +D ++ VL++G WP  +S    LP+E+ +  + F  FY ++   RKLTW+Y L    L+
Sbjct: 516 DLDFSIQVLSSGSWPFQQSCTFALPSELERSYQRFTAFYASRHSGRKLTWLYQLSKGELV 575

Query: 567 GKFESRTTELIVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKIL 626
                    L  +T+Q + LL +N+ D  +  ++     +  D + ++L  L  +K  +L
Sbjct: 576 TNCFKNRYTLQASTFQMAILLQYNTEDAYTVQQLTDSTQIKMDILAQVLQILLKSKLLVL 635

Query: 627 NKEPNTKT---ISPTDHFEFNSKFTDKMRRIKIPLP----PVDEKKKVIEDVDKDRRYAI 679
             E        + P    +    + +K  R+ I +P       E++   +++++DR+  I
Sbjct: 636 EDENANVDEVELKPDTLIKLYLGYKNKKLRVNINVPMKTEQKQEQETTHKNIEEDRKLLI 695

Query: 680 DASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSNPNM 739
            A+IVRIMK RKVL HQQL+ E + QL   FKP    IKK I+ LI ++YLER     + 
Sbjct: 696 QAAIVRIMKMRKVLKHQQLLGEVLTQLSSRFKPRVPVIKKCIDILIEKEYLERVDGEKDT 755

Query: 740 FRYLA 744
           + YLA
Sbjct: 756 YSYLA 760
>2hye_C Cullin-4A, CUL-4A; beta propeller, ring finger, zinc finger, propeller cluster, helical repeats, cullin repeats, protein binding; HET: DNA; 3.10A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 4a0k_A* 4a0c_C 4a0l_E* Length = 759 Back     alignment and structure
>3dpl_C Cullin-5; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} PDB: 3dqv_C Length = 382 Back     alignment and structure
>2wzk_A Cullin-5, CUL-5; UBL conjugation pathway, HIV, phosphoprotein, isopeptide bond, protein binding; 2.05A {Mus musculus} Length = 391 Back     alignment and structure
>4ap2_B Cullin-3, CUL-3; ubiquitination, E3 ligase, cell cycle; HET: EDO; 2.80A {Homo sapiens} PDB: 4apf_B Length = 410 Back     alignment and structure
>4eoz_B Cullin-3, CUL-3; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} PDB: 4apf_B Length = 364 Back     alignment and structure
>4a64_A Cullin-4B, CUL4B, CUL-4B; cell cycle; 2.57A {Homo sapiens} Length = 354 Back     alignment and structure
>1iuy_A Cullin-3 homologue; winged helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.34 Length = 92 Back     alignment and structure
>3tdu_C Cullin-1, CUL-1; E2:E3, ligase-protein binding complex; 1.50A {Homo sapiens} PDB: 3tdz_C Length = 77 Back     alignment and structure
>2do7_A Cullin-4B, CUL-4B; helix-turn-helix motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 101 Back     alignment and structure
>3o2p_E Cell division control protein 53; ligase, cell cycle; 2.23A {Saccharomyces cerevisiae} PDB: 3o6b_B Length = 88 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 744
d1ldja2394 a.118.17.1 (A:17-410) Cullin homolog 1, Cul-1 {Hum 2e-92
d2hyec3273 e.40.1.1 (C:403-675) Cullin-4A {Human (Homo sapien 2e-91
d2hyec2347 a.118.17.1 (C:55-401) Cullin-4A {Human (Homo sapie 1e-89
d1ldja3276 e.40.1.1 (A:411-686) Cullin homolog 1, cul-1 {Huma 8e-87
d1iuya_92 a.4.5.34 (A:) Cullin-3 homologue {Mouse (Mus muscu 1e-29
d1ldja190 a.4.5.34 (A:687-776) Anaphase promoting complex (A 1e-29
d2hyec184 a.4.5.34 (C:676-759) Cullin-4A {Human (Homo sapien 5e-28
>d1ldja2 a.118.17.1 (A:17-410) Cullin homolog 1, Cul-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 394 Back     information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cullin repeat-like
family: Cullin repeat
domain: Cullin homolog 1, Cul-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  292 bits (747), Expect = 2e-92
 Identities = 110/411 (26%), Positives = 201/411 (48%), Gaps = 60/411 (14%)

Query: 11  LEQGWEFMQKGITKLKNILEGLPEPQFSSEDYMMLYTTIYNMCTQKPPHDYSQ------- 63
           L+Q W+ ++ GI ++            +   YM LYT +YN CT     + ++       
Sbjct: 1   LDQIWDDLRAGIQQVYT------RQSMAKSRYMELYTHVYNYCTSVHQSNQARGAGVPPS 54

Query: 64  ----------------QLYDKYRESFEEYISSTVLPSIREKHDEFMLRELVKRWSNHKVM 107
                           +LY + +E  + Y+++ +L    +  DE +L+   ++W +++  
Sbjct: 55  KSKKGQTPGGAQFVGLELYKRLKEFLKNYLTN-LLKDGEDLMDESVLKFYTQQWEDYRFS 113

Query: 108 VRWLSRFFHYLDRYFIAR------RSLPPLNEVGLTCFRDLVYTELNGKVRDAVITLIDQ 161
            + L+    YL+R+++ R      + +  +  + L  +RD ++  LN +V +AV+ LI++
Sbjct: 114 SKVLNGICAYLNRHWVRRECDEGRKGIYEIYSLALVTWRDCLFRPLNKQVTNAVLKLIEK 173

Query: 162 EREGEQIDRALLKNVLDIFVEIGMGQMD---------YYENDFETAMLKDTAAYYSRKAS 212
           ER GE I+  L+  V+  +VE+G+ + D          Y+  FE+  L DT  +Y+R+++
Sbjct: 174 ERNGETINTRLISGVVQSYVELGLNEDDAFAKGPTLTVYKESFESQFLADTERFYTREST 233

Query: 213 NWILEDSCPDYMLKAEECLKREKDRVSHYLHSSSEPKLLEKVQHELLSVYANQLLEKEHS 272
            ++ ++   +YM KAE  L  E+ RV  YLH S++ +L  K +  L+     + LE  H+
Sbjct: 234 EFLQQNPVTEYMKKAEARLLEEQRRVQVYLHESTQDELARKCEQVLIE----KHLEIFHT 289

Query: 273 GCHALLRDDKVEDLSRMFRLFSKIPRGLDPVSNIFKQHVTAEGTALVKLAEDAASNKKAE 332
               LL  DK EDL RM+ L S+I  GL  +  + + H+  +G A ++   +AA N    
Sbjct: 290 EFQNLLDADKNEDLGRMYNLVSRIQDGLGELKKLLETHIHNQGLAAIEKCGEAALND--- 346

Query: 333 KRDVVGLQEQVFVRKVIELHDKYLAYVNDCFQNHTLFHKSLKEAFEVFCNK 383
                    +++V+ V+++H KY A V   F N   F  +L +A   F N 
Sbjct: 347 --------PKMYVQTVLDVHKKYNALVMSAFNNDAGFVAALDKACGRFINN 389
>d2hyec3 e.40.1.1 (C:403-675) Cullin-4A {Human (Homo sapiens) [TaxId: 9606]} Length = 273 Back     information, alignment and structure
>d2hyec2 a.118.17.1 (C:55-401) Cullin-4A {Human (Homo sapiens) [TaxId: 9606]} Length = 347 Back     information, alignment and structure
>d1ldja3 e.40.1.1 (A:411-686) Cullin homolog 1, cul-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 276 Back     information, alignment and structure
>d1iuya_ a.4.5.34 (A:) Cullin-3 homologue {Mouse (Mus musculus) [TaxId: 10090]} Length = 92 Back     information, alignment and structure
>d1ldja1 a.4.5.34 (A:687-776) Anaphase promoting complex (APC) {Human (Homo sapiens) [TaxId: 9606]} Length = 90 Back     information, alignment and structure
>d2hyec1 a.4.5.34 (C:676-759) Cullin-4A {Human (Homo sapiens) [TaxId: 9606]} Length = 84 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query744
d1ldja2394 Cullin homolog 1, Cul-1 {Human (Homo sapiens) [Tax 100.0
d2hyec2347 Cullin-4A {Human (Homo sapiens) [TaxId: 9606]} 100.0
d2hyec3273 Cullin-4A {Human (Homo sapiens) [TaxId: 9606]} 100.0
d1ldja3276 Cullin homolog 1, cul-1 {Human (Homo sapiens) [Tax 100.0
d1ldja190 Anaphase promoting complex (APC) {Human (Homo sapi 99.82
d2hyec184 Cullin-4A {Human (Homo sapiens) [TaxId: 9606]} 99.8
d1iuya_92 Cullin-3 homologue {Mouse (Mus musculus) [TaxId: 1 99.79
d1lnwa_141 MexR repressor {Pseudomonas aeruginosa [TaxId: 287 83.6
d1lj9a_144 Transcriptional regulator SlyA {Enterococcus faeca 82.9
d1ylfa1138 Hypothetical protein BC1842 {Bacillus cereus [TaxI 80.56
d2a61a1139 Transcriptional regulator TM0710 {Thermotoga marit 80.41
>d1ldja2 a.118.17.1 (A:17-410) Cullin homolog 1, Cul-1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cullin repeat-like
family: Cullin repeat
domain: Cullin homolog 1, Cul-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=0  Score=455.32  Aligned_cols=352  Identities=30%  Similarity=0.559  Sum_probs=322.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCC-----------------------CCHHHHHH
Q ss_conf             8977999999999999975199999999677999999994652378887-----------------------83699999
Q 004583           11 LEQGWEFMQKGITKLKNILEGLPEPQFSSEDYMMLYTTIYNMCTQKPPH-----------------------DYSQQLYD   67 (744)
Q Consensus        11 f~~~W~~l~~~i~~i~~il~~~~~~~~~~~~y~~lY~~vy~lc~~~~~~-----------------------~~~e~LY~   67 (744)
                      .|++|+.|++||++|   ++++   +++..+||++|++||++|+++++.                       ..|+.||+
T Consensus         1 ~d~~W~~L~~ai~~I---~~~~---~~~~~~~~~lY~~vy~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~LY~   74 (394)
T d1ldja2           1 LDQIWDDLRAGIQQV---YTRQ---SMAKSRYMELYTHVYNYCTSVHQSNQARGAGVPPSKSKKGQTPGGAQFVGLELYK   74 (394)
T ss_dssp             CHHHHHHHHHHHHHH---TTCC---CCCHHHHHHHHHHHHHHTCCC----------------------------TTHHHH
T ss_pred             CCCHHHHHHHHHHHH---HHCC---CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHH
T ss_conf             963499999999999---8669---9997999999999999994487432000111101121000121025457999999


Q ss_pred             HHHHHHHHHHHHCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHCHHHHHCCC------CCCHHHHHHHHHHH
Q ss_conf             999999999983212001002826799999999999899999998852200023220289------87088999999999
Q 004583           68 KYRESFEEYISSTVLPSIREKHDEFMLRELVKRWSNHKVMVRWLSRFFHYLDRYFIARRS------LPPLNEVGLTCFRD  141 (744)
Q Consensus        68 ~l~~~l~~~l~~~~~~~l~~~~~~~~L~~~~~~W~~~~~~~~~l~~if~YLdr~yv~~~~------~~~i~~l~l~~f~~  141 (744)
                      ++++.+..|+.+. .+.+....++.+|..+...|.+|+.++.+|+++|+||||+|+++++      .++|+++|+.+|++
T Consensus        75 ~l~~~l~~~l~~i-~~~~~~~~~~~~L~~~~~~W~~~~~~~~~l~~if~YLdr~yv~~~~~~~~~~~~~I~~~~l~~fr~  153 (394)
T d1ldja2          75 RLKEFLKNYLTNL-LKDGEDLMDESVLKFYTQQWEDYRFSSKVLNGICAYLNRHWVRRECDEGRKGIYEIYSLALVTWRD  153 (394)
T ss_dssp             HHHHHHHHHHHHH-HHTTCSCTTTTHHHHHHHHHHHHHHHHHHHHHHTHHHHHHSSSCCC-------CCHHHHHHHTTHH
T ss_pred             HHHHHHHHHHHHH-HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH
T ss_conf             9999999999999-987743787999999999999999999999999988668998860444566654199999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCC---------CHHCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             998732689999999999999569936989899999999982367---------51211998899999999999999999
Q 004583          142 LVYTELNGKVRDAVITLIDQEREGEQIDRALLKNVLDIFVEIGMG---------QMDYYENDFETAMLKDTAAYYSRKAS  212 (744)
Q Consensus       142 ~i~~~l~~~l~~~il~~i~~~R~g~~i~~~~l~~~i~~~~~l~~~---------~~~~Y~~~FE~~~L~~t~~yY~~~~~  212 (744)
                      .+|.++.+++.++++++|.++|+|+.+|+.++++++.|++.+|..         ++++|.+.||++||+.|..||+.+++
T Consensus       154 ~v~~~~~~~l~~~il~~I~~~R~g~~i~~~li~~~i~~l~~l~~~~~~~~~~~~~~~~Y~~~FE~~~L~~t~~~Y~~~~~  233 (394)
T d1ldja2         154 CLFRPLNKQVTNAVLKLIEKERNGETINTRLISGVVQSYVELGLNEDDAFAKGPTLTVYKESFESQFLADTERFYTREST  233 (394)
T ss_dssp             HHTTTTTTHHHHHHHHHHTTTSCCTTCCTHHHHHHHHHHHHTSCCSSSSSCSSCCCHHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999999867896669999999999999483232333013227887899899999999999999999


Q ss_pred             HHHHCCCHHHHHHHHHHHHHHHHHHHCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf             88830991079999999999999887100498857799999999999999999997300013553403857889999985
Q 004583          213 NWILEDSCPDYMLKAEECLKREKDRVSHYLHSSSEPKLLEKVQHELLSVYANQLLEKEHSGCHALLRDDKVEDLSRMFRL  292 (744)
Q Consensus       213 ~~l~~~~~~eYl~~v~~~l~~E~~r~~~~l~~~t~~~i~~~l~~~LI~~~~~~ll~~~~~g~~~ll~~~~~~~L~~ly~L  292 (744)
                      .|+..+++++|+++|+.++++|.+||+.||+++|.+++.+++.++||.+|.+.|.    +|+..||++++.++|++||+|
T Consensus       234 ~~l~~~~~~eYl~~v~~~l~eE~~r~~~yl~~~t~~~l~~~l~~~LI~~~~~~l~----~~~~~ll~~~~~~~L~~lY~L  309 (394)
T d1ldja2         234 EFLQQNPVTEYMKKAEARLLEEQRRVQVYLHESTQDELARKCEQVLIEKHLEIFH----TEFQNLLDADKNEDLGRMYNL  309 (394)
T ss_dssp             HHHHHSCTTSSHHHHHHHHHHHHHTTTTTTCSSSSHHHHHHHHHHHSSSSSHHHH----HHHHHHHHSCCTTHHHHHHHH
T ss_pred             HHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHCCCHHHHHHHHHH
T ss_conf             9998498358999999999999999997468646999999999999999999999----999999871658899999999


Q ss_pred             HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
Q ss_conf             04689993769999999999999999997898743233210001364158999999999999989999852798468999
Q 004583          293 FSKIPRGLDPVSNIFKQHVTAEGTALVKLAEDAASNKKAEKRDVVGLQEQVFVRKVIELHDKYLAYVNDCFQNHTLFHKS  372 (744)
Q Consensus       293 ~~~~~~~l~~l~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ll~l~~~~~~li~~~F~~~~~f~~~  372 (744)
                      |++++++++.++..|++||.++|.++++......           ..++..||+.|++++++++.++.+||++|+.|.++
T Consensus       310 ~~rv~~~~~~l~~~~~~~I~~~G~~~i~~~~~~~-----------~~~~~~~V~~ll~l~~~~~~ii~~~F~~d~~f~~~  378 (394)
T d1ldja2         310 VSRIQDGLGELKKLLETHIHNQGLAAIEKCGEAA-----------LNDPKMYVQTVLDVHKKYNALVMSAFNNDAGFVAA  378 (394)
T ss_dssp             HHHSTTCHHHHHHHHHHHHHHHHHHHHHHHTTSG-----------GGCHHHHHHHHHHHHHHHHHHHHTTTTTCHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----------CCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf             8655351899999999999999999997233114-----------57868999999999999999999985998899999


Q ss_pred             HHHHHHHHHCCC
Q ss_conf             999998986089
Q 004583          373 LKEAFEVFCNKG  384 (744)
Q Consensus       373 l~~af~~~~n~~  384 (744)
                      +++||+.|+|++
T Consensus       379 l~~af~~fiN~n  390 (394)
T d1ldja2         379 LDKACGRFINNN  390 (394)
T ss_dssp             HHHHHHHHHHSS
T ss_pred             HHHHHHHHHCCC
T ss_conf             999999983766
>d2hyec2 a.118.17.1 (C:55-401) Cullin-4A {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2hyec3 e.40.1.1 (C:403-675) Cullin-4A {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ldja3 e.40.1.1 (A:411-686) Cullin homolog 1, cul-1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ldja1 a.4.5.34 (A:687-776) Anaphase promoting complex (APC) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2hyec1 a.4.5.34 (C:676-759) Cullin-4A {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1iuya_ a.4.5.34 (A:) Cullin-3 homologue {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1lnwa_ a.4.5.28 (A:) MexR repressor {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1lj9a_ a.4.5.28 (A:) Transcriptional regulator SlyA {Enterococcus faecalis [TaxId: 1351]} Back     information, alignment and structure
>d1ylfa1 a.4.5.55 (A:5-142) Hypothetical protein BC1842 {Bacillus cereus [TaxId: 1396]} Back     information, alignment and structure
>d2a61a1 a.4.5.28 (A:5-143) Transcriptional regulator TM0710 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure