Citrus Sinensis ID: 004596

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740---

MGLPEMAEFSRNFGVLVRVQGPDPKGLKMRRHAFHQYNSGKTTLSASGMLLPLSFFDTKVAERNWGVNGLIVTVASVVEPFLLPQYRDKDTSEGQPELITGSQIDFLVEGKLRSEKEHEDVDKGSPEWVTAQLMMLVDIPVSSLALQSLMEASSGLPEHEWEVGWSLAPYNNSSQPLMGVVKTSIESNKISLMESHRPFAMEESSNLSLMSKSTSRVAILGVSSYLKDLPNIALTPLNKRGDLLLAVGSPFGVLSPMHFFNSVSMGSVANCYPPRSTTRSLLMADIRCLPGGPVFGEHAHFVGILIRPLRQKSGAEIQLVIPWEAIATACSDLLLKEPQNAEKEIHINKGNLNAVGNSLLFNSHILNGACCYKYEHVDSRCRSPLPIQKALASVCLITIDDGVWASGVLLNDQGLILTNAHLLEPWRFGKTTVSGWRNGVSFQPEDSASSGHTGVDQYQKSQTLPPKMPKIVDSSVDEHRAYKLSSFSRGHRKIRVRLDHLDPWIWCDAKIVYVCKGPLDVSLLQLGYIPDQLCPIDADFGQPSLGSAAYVIGHGLFGPRCGLSPSVSSGVVAKVVKANLPSYGQSTLQRNSAYPVMLETTAAVHPGGSGGAVVNLDGHMIGLVTSNARHGGGTVIPHLNFSIPCAVLRPIFEFARDMQEVSLLRKLDEPNKHLASVWALMPPLSPKQGPSLPDLPQAALEDNIEGKGSRFAKFIAERREVLKHSTQVGNAERVSGEIFRSKL

ccHHHHHHHHHccEEEEEEEcccccHHHHHccccccccccccEEEEEccccccccccccHHHHccccccEEEEEcccccccccccccccccccccccccccccEEEEEEcccccccccccccccccccHHHHHHHcccccccHHHHHHHHHHcccccccccccEEEEcccccccccccccEEEEEEEccEEcccccccccccccccccccccccccEEEEEEccccccccccccccccccccEEEEEccccccccccccccccEEEEEEcccccccccccEEEEEccccccccEEccccEEEEEEEccccccccccEEEccHHHHHHHHHHHHHHcccccHHHHHHHHcccccccccccccccccccccccccccccccccccccHHHHcccEEEEEEEcccEEEcEEEEccccEEEEccccccccccccEEccccccccccccccccccccccccccccccccccccccccccEEEccccEEEccccccccEEEEEEcccccccccccEEEEccccccEEEEEEEcccccccccccccccccccccEEEEEccccccccccccccEEEEEEEEEEEEcccccccccccccccccccEEcccccccccccccEEcccccEEEEEEEEccccccccccccEEEccHHHHHHHHHHHHHcccEEEEEEcccccHHHHHHHcccccccccccccccccccccccccccccEEEEccHHHHHHHHHccccccccccEEEEEEEcccc

ccHHHHHHHHHHHHEEEEEccccHHHHHHHHHHHHHHcccccEEEHHHHccccccccHHHHHHHcccccEEEEEEEEEcccccHHHccccccccccccccccEEEEEEEEEEccccccccccccccccHHHHHHHHccccHHHHHHHHHHHcccccccccccEccEEccccccccccccEEEEEEccccccHHHccccccccccccHHHHHHHHHHHHHccccccccccccEEEEcccccccEEEEEccccccccHHHHHHHcccEEEEcccccccccccEEEEEcccccccccccccccEEEEEEcccccccccEEEEEEEHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccEEEEEEcccEEEEEEEEccccEEEEccEEEcccccccccccccccccccccHHHHccccccHHHccccccccccccccccccccccccEEEEEEEccccEEEEEEcccccEEEEccEEEEEccccccEEEEEEcccccccccccccccccccccEEEEEEccccccccccccccccEEEEEEEEEcccccccccccccccccEEEEEEcEEccccccccEEEcccEEEEEEEEccccccccEccccccEEcHHHHHHHHHHHHHcccccEEEcccccccHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccHcHHHHccccccccc

MGLPEMAEFSRNFGVLVrvqgpdpkglkmrrhafhqynsgkttlsasgmllplsffdtkvaernwgvNGLIVTVASVvepfllpqyrdkdtsegqpelitgsqidflvegklrsekehedvdkgspEWVTAQLMMLVDIPVSSLALQSLMeassglpehewevgwslapynnssqplmGVVKTSIESNKIslmeshrpfameessnlslmskstSRVAILGVSsylkdlpnialtplnkrgdlllavgspfgvlspmhffnsvsmgsvancypprsttRSLLMADirclpggpvfgehaHFVGILirplrqksgaeiqlvipWEAIATACSDLLLKEPQNAEKEIHINKGNLNAVGNSLLFNSHIlngaccykyehvdsrcrsplpIQKALASVCLITiddgvwasgvllndqgliltnahllepwrfgkttvsgwrngvsfqpedsassghtgvdqyqksqtlppkmpkivdssvdehrayklssfsrghrkirvrldhldpwiwcdakivyvckgpldvsllqlgyipdqlcpidadfgqpslgsAAYVIGhglfgprcglspsvssGVVAKVVKAnlpsygqstlqrnsaypvMLETtaavhpggsggavvnlDGHMIGLVTsnarhgggtviphlnfsipcavlRPIFEFARDMQEVSLLRkldepnkhLASVWalmpplspkqgpslpdlpqaaledniegkGSRFAKFIAERREVLKHStqvgnaervsgeIFRSKL

MGLPEMAEFSRNFGVLVRVQGPDPKGLKMRRHAFHQYNSGKTTLSASGMLLPLSFFDTKVAERNWGVNGLIVTVASVVEPFLLPQYRDkdtsegqpelitgsqidflVEGKLrsekehedvdkgSPEWVTAQLMMLVDIPVSSLALQSLMEASSGLPEHEWEVGWSLAPYNNSSQPLMGVVKTSIESNKISLMESHRPFAMEESSNLSLMSKSTSRVAILGVSSYLKDLPNIALTPLNKRGDLLLAVGSPFGVLSPMHFFNSVSMGSVANCYPPRSTTRSLLMADIRCLPGGPVFGEHAHFVGILIRPLRQKSGAEIQLVIPWEAIATACSDLLLKEPQNAEKEIHINKGNLNAVGNSLLFNSHILNGACCYKYEHVDSRCRSPLPIQKALASVCLITIDDGVWASGVLLNDQGLILTNAHLLEPWRFGKTTVSGWRNGVSFQPEDSASSGHTGVDQyqksqtlppkmpKIVDSSVDEHRAyklssfsrghrkirvrldhldpwiWCDAKIVYVCKGPLDVSLLQLGYIPDQLCPIDADFGQPSLGSAAYVIGHGLFGPRCGLSPSVSSGVVAKVVKANLPSYGQSTLQRNSAYPVMLETTAAVHPGGSGGAVVNLDGHMIGLVTSNARHGGGTVIPHLNFSIPCAVLRPIFEFARDMQEVSLLRKLDEPNKHLASVWALMPPLSPKQGPSLPDLPQAALEDNIEGKGSRFAKFIAERRevlkhstqvgnaervsgeifrskl

MGLPEMAEFSRNFGVLVRVQGPDPKGLKMRRHAFHQYNSGKTTLSASGMLLPLSFFDTKVAERNWGVNGLIVTVASVVEPFLLPQYRDKDTSEGQPELITGSQIDFLVEGKLRSEKEHEDVDKGSPEWVTAQLMMLVDIPVSSLALQSLMEASSGLPEHEWEVGWSLAPYNNSSQPLMGVVKTSIESNKISLMESHRPFAmeessnlslmskstsRVAILGVSSYLKDLPNIALTPLNKRGDLLLAVGSPFGVLSPMHFFNSVSMGSVANCYPPRSTTRSLLMADIRCLPGGPVFGEHAHFVGILIRPLRQKSGAEIQLVIPWEAIATACSDLLLKEPQNAEKEIHINKGNLNAVGNSLLFNSHILNGACCYKYEHVDSRCRSPLPIQKALASVCLITIDDGVWASGVLLNDQGLILTNAHLLEPWRFGKTTVSGWRNGVSFQPEDSASSGHTGVDQYQKSQTLPPKMPKIVDSSVDEHRAYKLSSFSRGHRKIRVRLDHLDPWIWCDAKIVYVCKGPLDVSLLQLGYIPDQLCPIDADFGQPSLGSAAYVIGHGLFGPRCGLspsvssgvvakvvkaNLPSYGQSTLQRNSAYPVMLETTAAVHPGGSGGAVVNLDGHMIGLVTSNARHGGGTVIPHLNFSIPCAVLRPIFEFARDMQEVSLLRKLDEPNKHLASVWALMPPLSPKQGPSLPDLPQAALEDNIEGKGSRFAKFIAERREVLKHSTQVGNAERVSGEIFRSKL

***********NFGVLVRV************HAFHQYNSGKTTLSASGMLLPLSFFDTKVAERNWGVNGLIVTVASVVEPFLLPQYR************TGSQIDFLV******************EWVTAQLMMLVDIPVSSLALQSLMEA**GLPEHEWEVGWSLAPYN********************************************RVAILGVSSYLKDLPNIALTPLNKRGDLLLAVGSPFGVLSPMHFFNSVSMGSVANCYPPRSTTRSLLMADIRCLPGGPVFGEHAHFVGILIRPLRQKSGAEIQLVIPWEAIATACSDLLLKEPQNAEKEIHINKGNLNAVGNSLLFNSHILNGACCYKYEHVDSRCRSPLPIQKALASVCLITIDDGVWASGVLLNDQGLILTNAHLLEPWRFGKTTVSGWRNGV**********************************************FSRGHRKIRVRLDHLDPWIWCDAKIVYVCKGPLDVSLLQLGYIPDQLCPIDADFGQPSLGSAAYVIGHGLFGPRCGLSPSVSSGVVAKVVKANLPSYGQSTLQRNSAYPVMLETTAAVHPGGSGGAVVNLDGHMIGLVTSNARHGGGTVIPHLNFSIPCAVLRPIFEFARDMQEVSLLRKLDEPNKHLASVWAL*********************************FI****************************

****E*A*FSRNFGVLVRVQGPDPKGLKMRRHAFHQYNSGKTTLSASGMLLPLSFFDTKVAERNWGVNGLIVTVASVVEPF******************TGSQIDFLVE*******************VTAQLMMLVDIPVSSL******************VGWSLAPYNNSSQPLMGVVKTSIESNKISL********************STSRVAILGVSSYLKDL******PLNKRGDLLLAVGSPFGVLSPMHFFNSVSMGSVANCYPPRSTTRSLLMADIRCLPGGPVFGEHAHFVGILIRPLRQKSGAEIQLVIPWEAIATACSDLLLKEP********I*****************************************KALASVCLITIDDGVWASGVLLNDQGLILTNAHLLEPWR****************************************************RAYKLSSFSRGHRKIRVRLDHLDPWIWCDAKIVYVCKGPLDVSLLQLGYIPDQLCPIDADFGQPSLGSAAYVIGHGLFGPRCGLSPSVSSGVVAKVVKANLPS*GQSTLQRNSAYPVMLETTAAVHPGGSGGAVVNLDGHMIGLVTSNARHGGGTVIPHLNFSIPCAVLRPIFEFARDMQEVSLLRKLDEPNKHLASVWALMPPL*********************GKGSRFAKFIA*****************VSGEIFRSKL

MGLPEMAEFSRNFGVLVRVQGPDPKGLKMRRHAFHQYNSGKTTLSASGMLLPLSFFDTKVAERNWGVNGLIVTVASVVEPFLLPQYR********PELITGSQIDFLVEGKLR***********SPEWVTAQLMMLVDIPVSSLALQSLM********HEWEVGWSLAPYNNSSQPLMGVVKTSIESNKISLMESHRPFAMEESSNLSLMSKSTSRVAILGVSSYLKDLPNIALTPLNKRGDLLLAVGSPFGVLSPMHFFNSVSMGSVANCYPPRSTTRSLLMADIRCLPGGPVFGEHAHFVGILIRPLRQKSGAEIQLVIPWEAIATACSDLLLKEPQNAEKEIHINKGNLNAVGNSLLFNSHILNGACCYKYEHVDSRCRSPLPIQKALASVCLITIDDGVWASGVLLNDQGLILTNAHLLEPWRFGKTTVSGWRNGVSFQP******************TLPPKMPKIVDSSVDEHRAYKLSSFSRGHRKIRVRLDHLDPWIWCDAKIVYVCKGPLDVSLLQLGYIPDQLCPIDADFGQPSLGSAAYVIGHGLFGPRCGLSPSVSSGVVAKVVKANLPSYGQSTLQRNSAYPVMLETTAAVHPGGSGGAVVNLDGHMIGLVTSNARHGGGTVIPHLNFSIPCAVLRPIFEFARDMQEVSLLRKLDEPNKHLASVWALMPPLSPKQGPSLPDLPQAALEDNIEGKGSRFAKFIAERREVLKHSTQVGNAERVSGEIFRSKL

*GLPEMAEFSRNFGVLVRVQGPDPKGLKMRRHAFHQYNSGKTTLSASGMLLPLSFFDTKVAERNWGVNGLIVTVASVVEPFLLPQYRDKDTSEGQPELITGSQIDFLVEGKLRSE*******KGSPEWVTAQLMMLVDIPVSSLALQSLMEASSGLPEHEWEVGWSLAPYNNSSQPLMGVVKTSIESNKIS*********M*ESSNLSLMSKSTSRVAILGVSSYLKDLPNIALTPLNKRGDLLLAVGSPFGVLSPMHFFNSVSMGSVANCYPPRSTTRSLLMADIRCLPGGPVFGEHAHFVGILIRPLRQKSGAEIQLVIPWEAIATACSDLLLKEPQNAEKEI*********************NGACCYKYEHVDSRCRSPLPIQKALASVCLITIDDGVWASGVLLNDQGLILTNAHLLEPWRFGKTTVSG**NGVSFQPEDSA**GHTGVDQYQKSQTLPPKMPKIVDSSVDEHRAYKLSSFSRGHRKIRVRLDHLDPWIWCDAKIVYVCKGPLDVSLLQLGYIPDQLCPIDADFGQPSLGSAAYVIGHGLFGPRCGLSPSVSSGVVAKVVKANLP**********SAYPVMLETTAAVHPGGSGGAVVNLDGHMIGLVTSNARHGGGTVIPHLNFSIPCAVLRPIFEFARDMQEVSLLRKLDEPNKHLASVWALMPPLSPKQGPSLPDLPQAALEDNIEGKGSRFAKFIAERREVLKHSTQVGNAERVSGEIF****

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		743	2.2.26 [Sep-21-2011]
Q8VZD4		709	Glyoxysomal processing pr	yes	no	0.931	0.976	0.526	0.0
Q2T9J0		566	Peroxisomal leader peptid	yes	no	0.219	0.287	0.367	2e-19
Q9DBA6		568	Peroxisomal leader peptid	yes	no	0.168	0.220	0.394	3e-16
P45129		466	Probable periplasmic seri	yes	no	0.216	0.345	0.313	2e-07
P39099		455	Periplasmic pH-dependent	N/A	no	0.270	0.441	0.271	6e-06
P57322		478	Probable serine protease	yes	no	0.152	0.236	0.312	2e-05
P26982		475	Periplasmic serine endopr	yes	no	0.165	0.258	0.326	3e-05
P0C0V0		474	Periplasmic serine endopr	N/A	no	0.165	0.259	0.326	3e-05
P0C0V1		474	Periplasmic serine endopr	N/A	no	0.165	0.259	0.326	3e-05
F6AA62		479	Probable periplasmic seri	yes	no	0.174	0.271	0.296	0.0002

>sp\|Q8VZD4\|DEG15_ARATH Glyoxysomal processing protease, glyoxysomal OS=Arabidopsis thaliana GN=DEG15 PE=1 SV=2	Back alignment and function desciption

 Score =  722 bits (1863), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/760 (52%), Positives = 514/760 (67%), Gaps = 68/760 (8%)

Query: 1   MGLPEMAEFSRNFGVLVRVQGPDPKGLKMRRHAFHQYNSGKTTLSASGMLLPLS-FFDTK 59
           M + ++  FSRNF VLV+V+GPDPKGLKMR+HAFHQY+SG  TLSASG+LLP   F   +
Sbjct: 1   MDVSKVVSFSRNFAVLVKVEGPDPKGLKMRKHAFHQYHSGNATLSASGILLPRDIFLSGE 60

Query: 60  VAERNWGVNG----LIVTVASVVEPFLLPQYRDKDTSEGQP-ELITGSQIDFLVEGKLRS 114
           VA +     G    L++TVASVVEPFL   +R   +    P +LI G+ I+ +VEG+L+S
Sbjct: 61  VAAKVLFEAGQDMALVLTVASVVEPFLTLGHRTSSSISQDPVKLIPGAMIEIMVEGQLKS 120

Query: 115 EKEHEDVDKGSPEWVTAQLMMLVDIPVSSLALQSLMEASSGLPEHEWEVGWSLAPYNNSS 174
           EKE       +P WV AQL+ LVD+PVSS ALQSL+EASSG  +  W++GWSL    N S
Sbjct: 121 EKE-------APFWVPAQLLSLVDVPVSSAALQSLIEASSGSKDSGWDIGWSLVSAANGS 173

Query: 175 QPLMGVVKTSIESNKISLMESHRPFAMEESSNLSLMSKSTSRVAILGVSSYLKDLPNIAL 234
           QP       +IE     LM+      ++E  N + M+KS +R+AILGV   L   P++  
Sbjct: 174 QP-----SINIEHYSKPLMQ------LDEPHNANFMAKSATRMAILGVPLSLLGQPSMNF 222

Query: 235 TPLNKRGDLLLAVGSPFGVLSPMHFFNSVSMGSVANCYPPRSTTRSLLMADIRCLPG--- 291
              + +GD L+A+GSPFG+LSP++FFNSVS GS+AN YP  S  +SL++AD+RCLPG   
Sbjct: 223 ASSSSKGDTLVALGSPFGILSPVNFFNSVSTGSIANSYPSGSLKKSLMIADVRCLPGMEG 282

Query: 292 GPVFGEHAHFVGILIRPLRQK-SGAEIQLVIPWEAIATACSDLLLKEPQNAEKEIHINKG 350
            PVF ++ H +GILIRPLRQK SG EIQLV+PW AI TACS LLL+EP            
Sbjct: 283 APVFAKNGHLIGILIRPLRQKNSGVEIQLVVPWGAITTACSHLLLEEP------------ 330

Query: 351 NLNAVGNSLLFNSHILNGACCYKYEHVDSRCRSPLPIQKALASVCLITIDDGVWASGVLL 410
             +  G +  + S +L+          D+   + + I+KA+ SVCLIT++DGVWASG++L
Sbjct: 331 --SVEGKASQWGSEVLSVKS-------DASIPAQVAIEKAMESVCLITVNDGVWASGIIL 381

Query: 411 NDQGLILTNAHLLEPWRFGKTTVSGWRNGVSFQP-----EDSASSGHTGVDQYQKSQTLP 465
           N+ GLILTNAHLLEPWR+GK    G   G  F+P     E+ +S+G    +Q  KSQTLP
Sbjct: 382 NEHGLILTNAHLLEPWRYGK----GGVYGEGFKPYVLGAEEFSSTGSKFWEQ--KSQTLP 435

Query: 466 PKMPKIVDSSVDEH-RAYKLSSFSRGHRKIRVRLDHLDPWIWCDAKIVYVCKGPLDVSLL 524
            K P+   SSV E+ R YK +    GHR IRVRL HLD W WC A +VY+CK  LD++LL
Sbjct: 436 RKAPRNHYSSVGENIREYKHNFLQTGHRDIRVRLCHLDSWTWCPANVVYICKEQLDIALL 495

Query: 525 QLGYIPDQLCPIDADFGQPSLGSAAYVIGHGLFGPRCGLSPSVSSGVVAKVVKANLPSYG 584
           QL Y+P +L PI A+F  P LG+ A+V+GHGLFGPRCGLSPS+ SGVVAKVV A      
Sbjct: 496 QLEYVPGKLQPITANFSSPPLGTTAHVVGHGLFGPRCGLSPSICSGVVAKVVHAKRRLNT 555

Query: 585 QSTLQRNSAYPVMLETTAAVHPGGSGGAVVNLDGHMIGLVTSNARHGGGTVIPHLNFSIP 644
           QS  Q  + +P MLETTAAVHPGGSGGAV+N  GHMIGLVTSNARHG GTVIPHLNFSIP
Sbjct: 556 QSISQEVAEFPAMLETTAAVHPGGSGGAVLNSSGHMIGLVTSNARHGAGTVIPHLNFSIP 615

Query: 645 CAVLRPIFEFARDMQEVSLLRKLDEPNKHLASVWALMPPLSPKQGPSLPDLPQAALE-DN 703
           CAVL PIF+FA DMQ  ++L+ LD+P++ L+S+WALMP LSPK   SLP+LP+   + +N
Sbjct: 616 CAVLAPIFKFAEDMQNTTILQTLDQPSEELSSIWALMPSLSPKTEQSLPNLPKLLKDGNN 675

Query: 704 IEGKGSRFAKFIAERREVLKHSTQVGNAERVSGEIFRSKL 743
            + KGS+FAKFIAE +++    T      ++S ++  SKL
Sbjct: 676 KQTKGSQFAKFIAETQDMFVKPT------KLSRDVIPSKL 709

Trypsin-like serine endopeptidase involved in the processing of glyoxysomal higher molecular weight precursor. The dimeric form carries out the specific cleavages needed to remove PTS2-containing presequences, whereas the monomeric form degrades the removed presequences and misfolded proteins (Probable). Not required for degradation of glyoxylate cycle enzymes during seedling development.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 4EC: .EC: 2EC: 1EC: .EC: -

>sp\|Q2T9J0\|TYSD1_HUMAN Peroxisomal leader peptide-processing protease OS=Homo sapiens GN=TYSND1 PE=1 SV=3	Back alignment and function description

>sp\|Q9DBA6\|TYSD1_MOUSE Peroxisomal leader peptide-processing protease OS=Mus musculus GN=Tysnd1 PE=1 SV=1	Back alignment and function description

>sp\|P45129\|HTOA_HAEIN Probable periplasmic serine protease do/HhoA-like OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=HI_1259 PE=3 SV=1	Back alignment and function description

>sp\|P39099\|DEGQ_ECOLI Periplasmic pH-dependent serine endoprotease DegQ OS=Escherichia coli (strain K12) GN=degQ PE=1 SV=1	Back alignment and function description

>sp\|P57322\|DEGP_BUCAI Probable serine protease do-like OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS) GN=degP PE=3 SV=1	Back alignment and function description

>sp\|P26982\|DEGP_SALTY Periplasmic serine endoprotease DegP OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=degP PE=3 SV=1	Back alignment and function description

>sp\|P0C0V0\|DEGP_ECOLI Periplasmic serine endoprotease DegP OS=Escherichia coli (strain K12) GN=degP PE=1 SV=1	Back alignment and function description

>sp\|P0C0V1\|DEGP_ECO57 Periplasmic serine endoprotease DegP OS=Escherichia coli O157:H7 GN=degP PE=3 SV=1	Back alignment and function description

>sp\|F6AA62\|DEGPL_PSEF1 Probable periplasmic serine endoprotease DegP-like OS=Pseudomonas fulva (strain 12-X) GN=Psefu_3239 PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		743
224077082		752	predicted protein [Populus trichocarpa]	0.987	0.976	0.649	0.0
224125536		716	predicted protein [Populus trichocarpa]	0.940	0.976	0.645	0.0
359483482		753	PREDICTED: LOW QUALITY PROTEIN: glyoxyso	0.983	0.970	0.616	0.0
255536763		729	trypsin domain-containing protein, putat	0.956	0.975	0.601	0.0
297740411		682	unnamed protein product [Vitis vinifera]	0.896	0.976	0.583	0.0
356546634		749	PREDICTED: glyoxysomal processing protea	0.970	0.962	0.558	0.0
111183165		753	putative protease/hydrolase [Solanum lyc	0.989	0.976	0.534	0.0
147774460		840	hypothetical protein VITISV_001901 [Viti	0.912	0.807	0.551	0.0
357446685		819	Peroxisomal leader peptide-processing pr	0.986	0.894	0.515	0.0
297851284		713	hypothetical protein ARALYDRAFT_473044 [	0.936	0.976	0.521	0.0

>gi\|224077082\|ref\|XP_002305124.1\| predicted protein [Populus trichocarpa] gi\|222848088\|gb\|EEE85635.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

 Score =  915 bits (2366), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 494/761 (64%), Positives = 591/761 (77%), Gaps = 27/761 (3%)

Query: 1   MGLPEMAEFSRNFGVLVRVQGPDPKGLKMRRHAFHQYNSGKTTLSASGMLLPLSFFDTKV 60
           MGLPE+ +F+RNF V+VR+QGPDPKGLKMR+HAFHQYNSGKTTLSASG+LLP + +D  +
Sbjct: 1   MGLPEIVDFARNFAVMVRIQGPDPKGLKMRKHAFHQYNSGKTTLSASGLLLPDTLYDADL 60

Query: 61  AER-----NWGVNGLIVTVASVVEPFLLPQYRDKDTSEGQPELITGSQIDFLVEGK--LR 113
           A R     + G+ GL+VTVASV+EPFL  ++R+   S+ +PELI G+QID + EGK  LR
Sbjct: 61  ANRILEGKSQGL-GLVVTVASVIEPFLSSKHRES-ISQSRPELIPGAQIDVMAEGKSDLR 118

Query: 114 SEKEHEDVDKGSPEWVTAQLMMLVDIPVSSLALQSLMEASSGLPEHEWEVGWSLAPYNNS 173
           +  +   +DKG+  W+ AQ++ LVD+P+SSLALQSL+EASSG   H WEVGWSLA   N 
Sbjct: 119 NGAD-GGLDKGTSHWLRAQVIRLVDVPLSSLALQSLVEASSGSMNHGWEVGWSLASPENG 177

Query: 174 SQPLMGVVKTSIESNKISLMESHRPFAMEESSNLSLMSKSTSRVAILGVSSYLKDLPNIA 233
           SQ  M VV+T  E    S+ ES R  A EESSN S+M KST+RVAILGV  +LKDLPN  
Sbjct: 178 SQSFMDVVQTQTEHGNASIAESQR-RAREESSNPSIMGKSTTRVAILGVFLHLKDLPNFE 236

Query: 234 LTPLNKRGDLLLAVGSPFGVLSPMHFFNSVSMGSVANCYPPRSTTRSLLMADIRCLPG-- 291
           ++  ++RGD LLAVGSPFGVLSP+HFFNS+S+GS+ANCYPPRS+  SLLMADIRCLPG  
Sbjct: 237 ISASSRRGDFLLAVGSPFGVLSPVHFFNSLSVGSIANCYPPRSSDISLLMADIRCLPGME 296

Query: 292 -GPVFGEHAHFVGILIRPLRQKS-GAEIQLVIPWEAIATACSDLLLKEPQNAEKEIHINK 349
             PVF E+++F+GILIRPLRQKS GAEIQLVIPWEAIA ACSDLLLKEPQNAEK IHINK
Sbjct: 297 GSPVFCENSNFIGILIRPLRQKSSGAEIQLVIPWEAIALACSDLLLKEPQNAEKGIHINK 356

Query: 350 GNLNAVGNSLLFNSHILNGACCYKYEHVDSRCRSPLPIQKALASVCLITIDDGVWASGVL 409
            NLNAVGN+   +S   +G    K+EH  S C SP P++KA+AS+CLITID+ VWASGVL
Sbjct: 357 ENLNAVGNAYSSSS---DGPFPLKHEHHISYCSSPPPVEKAMASICLITIDELVWASGVL 413

Query: 410 LNDQGLILTNAHLLEPWRFGKTTVSGWRNGVSFQ-----PEDSASSGHTGVDQYQKSQTL 464
           LNDQGLILTNAHLLEPWRFGKTTV+G  +G   Q     PE+     ++ VD ++K+Q L
Sbjct: 414 LNDQGLILTNAHLLEPWRFGKTTVNGGEDGTKLQDPFIPPEEFPR--YSEVDGHEKTQRL 471

Query: 465 PPKMPKIVDSSV-DEHRAYKLSSFSRGHRKIRVRLDHLDPWIWCDAKIVYVCKGPLDVSL 523
           PPK   I++SSV DE + YKLS   +G   IRVRLDH DPWIWCDAK+V+VCKGPLDV+L
Sbjct: 472 PPKTLNIMNSSVADESKGYKLSLSYKGPMNIRVRLDHADPWIWCDAKVVHVCKGPLDVAL 531

Query: 524 LQLGYIPDQLCPIDADFGQPSLGSAAYVIGHGLFGPRCGLSPSVSSGVVAKVVKANLPSY 583
           LQL ++PDQL P   DF   SLGS AYVIGHGLFGPRCG SPS+ SG V+KVVKA  PSY
Sbjct: 532 LQLEHVPDQLFPTKVDFECSSLGSKAYVIGHGLFGPRCGFSPSICSGAVSKVVKAKAPSY 591

Query: 584 GQSTLQRNSAYPVMLETTAAVHPGGSGGAVVNLDGHMIGLVTSNARHGGGTVIPHLNFSI 643
            QS     S  P MLETTAAVHPGGSGGAVVN +GHMIGLVTS ARHGGGTVIPHLNFSI
Sbjct: 592 CQSVQGGYSHIPAMLETTAAVHPGGSGGAVVNSEGHMIGLVTSKARHGGGTVIPHLNFSI 651

Query: 644 PCAVLRPIFEFARDMQEVSLLRKLDEPNKHLASVWALMPPLSPKQGPSLPDLPQAALED- 702
           PCAVL PIF+FA+DM+++SLL+ LD PN+HL+SVWALMPPLSPK  P LP LP++ L+D 
Sbjct: 652 PCAVLAPIFDFAKDMRDISLLQNLDRPNEHLSSVWALMPPLSPKPSPPLPSLPESILQDY 711

Query: 703 NIEGKGSRFAKFIAERREVLKHSTQVGNAERVSGEIFRSKL 743
             + KGSRFAKFIAER ++ + + Q+G A+ +S  I  SKL
Sbjct: 712 EKQVKGSRFAKFIAEREKLFRGTPQLGKAKSISSVIIPSKL 752

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|224125536\|ref\|XP_002329829.1\| predicted protein [Populus trichocarpa] gi\|222870891\|gb\|EEF08022.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|359483482\|ref\|XP_002273997.2\| PREDICTED: LOW QUALITY PROTEIN: glyoxysomal processing protease, glyoxysomal-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|255536763\|ref\|XP_002509448.1\| trypsin domain-containing protein, putative [Ricinus communis] gi\|223549347\|gb\|EEF50835.1\| trypsin domain-containing protein, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|297740411\|emb\|CBI30593.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356546634\|ref\|XP_003541729.1\| PREDICTED: glyoxysomal processing protease, glyoxysomal-like [Glycine max]	Back alignment and taxonomy information

>gi\|111183165\|gb\|ABH07902.1\| putative protease/hydrolase [Solanum lycopersicum]	Back alignment and taxonomy information

>gi\|147774460\|emb\|CAN59793.1\| hypothetical protein VITISV_001901 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|357446685\|ref\|XP_003593618.1\| Peroxisomal leader peptide-processing protease [Medicago truncatula] gi\|355482666\|gb\|AES63869.1\| Peroxisomal leader peptide-processing protease [Medicago truncatula]	Back alignment and taxonomy information

>gi\|297851284\|ref\|XP_002893523.1\| hypothetical protein ARALYDRAFT_473044 [Arabidopsis lyrata subsp. lyrata] gi\|297339365\|gb\|EFH69782.1\| hypothetical protein ARALYDRAFT_473044 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		743
TAIR\|locus:2032142		709	DEG15 "degradation of periplas	0.464	0.486	0.555	6.1e-170
DICTYBASE\|DDB_G0279049		849	DDB_G0279049 "trypsin-like ser	0.121	0.106	0.414	5.1e-26
UNIPROTKB\|Q2T9J0		566	TYSND1 "Peroxisomal leader pep	0.218	0.286	0.333	9.3e-23
ZFIN\|ZDB-GENE-030131-8525		565	tysnd1 "trypsin domain contain	0.177	0.233	0.318	1.6e-20
UNIPROTKB\|F1SUE6		568	TYSND1 "Uncharacterized protei	0.213	0.279	0.313	7.3e-20
MGI\|MGI:1919017		568	Tysnd1 "trypsin domain contain	0.216	0.283	0.326	1.4e-19
RGD\|1307354		567	Tysnd1 "trypsin domain contain	0.216	0.283	0.308	4.5e-19
UNIPROTKB\|J9P6K2		198	TYSND1 "Uncharacterized protei	0.218	0.818	0.327	1.7e-14
UNIPROTKB\|E2R4X7		418	TYSND1 "Uncharacterized protei	0.218	0.387	0.327	2.6e-12
UNIPROTKB\|E1BF31		565	E1BF31 "Uncharacterized protei	0.115	0.152	0.363	1.7e-10

TAIR\|locus:2032142 DEG15 "degradation of periplasmic proteins 15" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 978 (349.3 bits), Expect = 6.1e-170, Sum P(2) = 6.1e-170
 Identities = 199/358 (55%), Positives = 251/358 (70%)

Query:   378 DSRCRSPLPIQKALASVCLITIDDGVWASGVLLNDQGLILTNAHLLEPWRFGKTTVSGWR 437
             D+   + + I+KA+ SVCLIT++DGVWASG++LN+ GLILTNAHLLEPWR+GK  V G  
Sbjct:   349 DASIPAQVAIEKAMESVCLITVNDGVWASGIILNEHGLILTNAHLLEPWRYGKGGVYG-- 406

Query:   438 NGVSFQP-----EDSASSGHTGVDQYQKSQTLPPKMPKIVDSSVDEH-RAYKLSSFSRGH 491
              G  F+P     E+ +S+G    +Q  KSQTLP K P+   SSV E+ R YK +    GH
Sbjct:   407 EG--FKPYVLGAEEFSSTGSKFWEQ--KSQTLPRKAPRNHYSSVGENIREYKHNFLQTGH 462

Query:   492 RKIRVRLDHLDPWIWCDAKIVYVCKGPLDVSLLQLGYIPDQLCPIDADFGQPSLGSAAYV 551
             R IRVRL HLD W WC A +VY+CK  LD++LLQL Y+P +L PI A+F  P LG+ A+V
Sbjct:   463 RDIRVRLCHLDSWTWCPANVVYICKEQLDIALLQLEYVPGKLQPITANFSSPPLGTTAHV 522

Query:   552 IGHGLFGPRCGLXXXXXXXXXXXXXXXNLPSYGQSTLQRNSAYPVMLETTAAVHPGGSGG 611
             +GHGLFGPRCGL                     QS  Q  + +P MLETTAAVHPGGSGG
Sbjct:   523 VGHGLFGPRCGLSPSICSGVVAKVVHAKRRLNTQSISQEVAEFPAMLETTAAVHPGGSGG 582

Query:   612 AVVNLDGHMIGLVTSNARHGGGTVIPHLNFSIPCAVLRPIFEFARDMQEVSLLRKLDEPN 671
             AV+N  GHMIGLVTSNARHG GTVIPHLNFSIPCAVL PIF+FA DMQ  ++L+ LD+P+
Sbjct:   583 AVLNSSGHMIGLVTSNARHGAGTVIPHLNFSIPCAVLAPIFKFAEDMQNTTILQTLDQPS 642

Query:   672 KHLASVWALMPPLSPKQGPSLPDLPQAALE-DNIEGKGSRFAKFIAERREVLKHSTQV 728
             + L+S+WALMP LSPK   SLP+LP+   + +N + KGS+FAKFIAE +++    T++
Sbjct:   643 EELSSIWALMPSLSPKTEQSLPNLPKLLKDGNNKQTKGSQFAKFIAETQDMFVKPTKL 700

GO:0003824 "catalytic activity" evidence=IEA

GO:0004175 "endopeptidase activity" evidence=IMP

GO:0005777 "peroxisome" evidence=IDA

DICTYBASE\|DDB_G0279049 DDB_G0279049 "trypsin-like serine protease family protein" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

UNIPROTKB\|Q2T9J0 TYSND1 "Peroxisomal leader peptide-processing protease" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-030131-8525 tysnd1 "trypsin domain containing 1" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

UNIPROTKB\|F1SUE6 TYSND1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

MGI\|MGI:1919017 Tysnd1 "trypsin domain containing 1" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

RGD\|1307354 Tysnd1 "trypsin domain containing 1" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|J9P6K2 TYSND1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|E2R4X7 TYSND1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|E1BF31 E1BF31 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8VZD4	DEG15_ARATH	3, ., 4, ., 2, 1, ., -	0.5263	0.9313	0.9760	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.21	0.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		743
pfam13365		138	pfam13365, Trypsin_2, Trypsin-like peptidase domai	6e-08
PRK10942		473	PRK10942, PRK10942, serine endoprotease; Provision	7e-07
PRK10139		455	PRK10139, PRK10139, serine endoprotease; Provision	2e-05
COG0265		347	COG0265, DegQ, Trypsin-like serine proteases, typi	2e-05
TIGR02037		428	TIGR02037, degP_htrA_DO, periplasmic serine protea	3e-05
TIGR02038		351	TIGR02038, protease_degS, periplasmic serine pepet	2e-04

>gnl\|CDD\|222077 pfam13365, Trypsin_2, Trypsin-like peptidase domain	Back alignment and domain information

 Score = 51.8 bits (124), Expect = 6e-08
 Identities = 29/117 (24%), Positives = 44/117 (37%), Gaps = 15/117 (12%)

Query: 507 CDAKIVYVCKGPLDVSLLQLGYIPDQLCPIDADFGQPSLGSAAYVIGHGLFGPRCGLSPS 566
             A++V      LD++LL++        P+ A    P  GS   V G G  G        
Sbjct: 37  VPAEVVAADPD-LDLALLKVDGPLLPAAPLLASSAAPLGGSVVVVGGPGGIGLGASGGGG 95

Query: 567 VSSGVVAKVVKANLPSYGQSTLQRNSAYPVMLETTAAVHPGGSGGAVVNLDGHMIGL 623
              G+V+  +      Y              + T A   PG SGG V + DG ++G+
Sbjct: 96  GVGGLVSGSLGGVDGRY--------------ILTDADTSPGSSGGPVFDADGEVVGI 138

This family includes trypsin like peptidase domains. Length = 138

>gnl\|CDD\|236802 PRK10942, PRK10942, serine endoprotease; Provisional	Back alignment and domain information

>gnl\|CDD\|182262 PRK10139, PRK10139, serine endoprotease; Provisional	Back alignment and domain information

>gnl\|CDD\|223343 COG0265, DegQ, Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>gnl\|CDD\|233695 TIGR02037, degP_htrA_DO, periplasmic serine protease, Do/DeqQ family	Back alignment and domain information

>gnl\|CDD\|233696 TIGR02038, protease_degS, periplasmic serine pepetdase DegS	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		743
PRK10139		455	serine endoprotease; Provisional	99.96
TIGR02038		351	protease_degS periplasmic serine pepetdase DegS. T	99.96
PRK10898		353	serine endoprotease; Provisional	99.96
PRK10942		473	serine endoprotease; Provisional	99.95
TIGR02037		428	degP_htrA_DO periplasmic serine protease, Do/DeqQ	99.94
COG0265		347	DegQ Trypsin-like serine proteases, typically peri	99.85
PRK10139		455	serine endoprotease; Provisional	99.76
PRK10942		473	serine endoprotease; Provisional	99.72
TIGR02037		428	degP_htrA_DO periplasmic serine protease, Do/DeqQ	99.65
TIGR02038		351	protease_degS periplasmic serine pepetdase DegS. T	99.64
PRK10898		353	serine endoprotease; Provisional	99.63
COG0265		347	DegQ Trypsin-like serine proteases, typically peri	99.56
PF13365		120	Trypsin_2: Trypsin-like peptidase domain; PDB: 1Y8	99.55
KOG1320		473	consensus Serine protease [Posttranslational modif	99.47
PF00089		220	Trypsin: Trypsin; InterPro: IPR001254 In the MEROP	99.25
cd00190		232	Tryp_SPc Trypsin-like serine protease; Many of the	99.18
smart00020		229	Tryp_SPc Trypsin-like serine protease. Many of the	99.02
KOG1421		955	consensus Predicted signaling-associated protein (	98.92
KOG1320		473	consensus Serine protease [Posttranslational modif	98.81
COG3591		251	V8-like Glu-specific endopeptidase [Amino acid tra	98.52
KOG3627		256	consensus Trypsin [Amino acid transport and metabo	98.08
PF00863		235	Peptidase_C4: Peptidase family C4 This family belo	97.88
COG5640		413	Secreted trypsin-like serine protease [Posttransla	97.23
PF03761		282	DUF316: Domain of unknown function (DUF316) ; Inte	96.99
PF05579		297	Peptidase_S32: Equine arteritis virus serine endop	96.66
PF10459		698	Peptidase_S46: Peptidase S46; InterPro: IPR019500	96.32
PF13365		120	Trypsin_2: Trypsin-like peptidase domain; PDB: 1Y8	94.87
PF10459		698	Peptidase_S46: Peptidase S46; InterPro: IPR019500	94.63
PF00548		172	Peptidase_C3: 3C cysteine protease (picornain 3C);	94.06
KOG1421		955	consensus Predicted signaling-associated protein (	92.04
PF02907		148	Peptidase_S29: Hepatitis C virus NS3 protease; Int	88.82
PF08192		695	Peptidase_S64: Peptidase family S64; InterPro: IPR	88.22
PF00949		132	Peptidase_S7: Peptidase S7, Flavivirus NS3 serine	87.76
PF00089		220	Trypsin: Trypsin; InterPro: IPR001254 In the MEROP	86.56
PF00944		158	Peptidase_S3: Alphavirus core protein ; InterPro:	84.86
PF05580		218	Peptidase_S55: SpoIVB peptidase S55; InterPro: IPR	80.85

>PRK10139 serine endoprotease; Provisional	Back alignment and domain information

Probab=99.96  E-value=3.1e-28  Score=274.37  Aligned_cols=192  Identities=29%  Similarity=0.522  Sum_probs=158.4

Q ss_pred             chHHHhccCceEEEEECC----------------------------CeeEEEEEEeC-CCeEEecccccccccCcceecc
Q 004596          384 PLPIQKALASVCLITIDD----------------------------GVWASGVLLND-QGLILTNAHLLEPWRFGKTTVS  434 (743)
Q Consensus       384 p~~i~~a~~SVV~I~~~~----------------------------~~wGSGfvV~~-~G~ILTNaHVV~p~~~~~t~~~  434 (743)
                      ..+++++.||||.|....                            .++||||+|++ +||||||+||++          
T Consensus        43 ~~~~~~~~pavV~i~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~GSG~ii~~~~g~IlTn~HVv~----------  112 (455)
T PRK10139         43 APMLEKVLPAVVSVRVEGTASQGQKIPEEFKKFFGDDLPDQPAQPFEGLGSGVIIDAAKGYVLTNNHVIN----------  112 (455)
T ss_pred             HHHHHHhCCcEEEEEEEEeecccccCchhHHHhccccCCccccccccceEEEEEEECCCCEEEeChHHhC----------
Confidence            357899999999996410                            14799999985 799999999997          


Q ss_pred             CCccccccCCCCCCCCCCCcccccccccCCCCCCCcccccccccccccccccccCCceeEEEEEcCCCCceeEeeEEEEe
Q 004596          435 GWRNGVSFQPEDSASSGHTGVDQYQKSQTLPPKMPKIVDSSVDEHRAYKLSSFSRGHRKIRVRLDHLDPWIWCDAKIVYV  514 (743)
Q Consensus       435 g~~~~~~f~~~~~~~~~~~~~~~~~~~q~~~~k~~~i~~~~~~~~~~~~l~l~~~~~~~I~Vrl~~~~~~~W~~A~VV~v  514 (743)
                      +                                                       ...|.|++.+++.   |+|++++ 
T Consensus       113 ~-------------------------------------------------------a~~i~V~~~dg~~---~~a~vvg-  133 (455)
T PRK10139        113 Q-------------------------------------------------------AQKISIQLNDGRE---FDAKLIG-  133 (455)
T ss_pred             C-------------------------------------------------------CCEEEEEECCCCE---EEEEEEE-
Confidence            2                                                       1248888888876   9999999 


Q ss_pred             cCCCCcEEEEEEccCCCCccceeCCCC-CCCCCCeEEEEecCCCCCCCCCCCeeEeEEEeeeeeccCCCCCccccccCCC
Q 004596          515 CKGPLDVSLLQLGYIPDQLCPIDADFG-QPSLGSAAYVIGHGLFGPRCGLSPSVSSGVVAKVVKANLPSYGQSTLQRNSA  593 (743)
Q Consensus       515 ~~~~~DLALLkLe~~p~~l~pi~l~~s-~~~~G~~V~vIGyPlfg~~~g~~psvt~GiIS~vv~~~~~~~~~~~~~~~~~  593 (743)
                      .|+.+||||||++. +..+++++++++ .+++||+|+++|||     +|+..+++.|+||+..+...         ....
T Consensus       134 ~D~~~DlAvlkv~~-~~~l~~~~lg~s~~~~~G~~V~aiG~P-----~g~~~tvt~GivS~~~r~~~---------~~~~  198 (455)
T PRK10139        134 SDDQSDIALLQIQN-PSKLTQIAIADSDKLRVGDFAVAVGNP-----FGLGQTATSGIISALGRSGL---------NLEG  198 (455)
T ss_pred             EcCCCCEEEEEecC-CCCCceeEecCccccCCCCEEEEEecC-----CCCCCceEEEEEcccccccc---------CCCC
Confidence            56779999999985 457889999886 68999999999995     57778999999998766321         0123


Q ss_pred             cCeEEEEccccCCCCcccceecCCceEEEEEeeeecCCCCcccCceeEEEehhHHHHHHHHHHhcCCc
Q 004596          594 YPVMLETTAAVHPGGSGGAVVNLDGHMIGLVTSNARHGGGTVIPHLNFSIPCAVLRPIFEFARDMQEV  661 (743)
Q Consensus       594 ~~~~IqTdAai~~GnSGGPL~d~~G~VIGIvtsna~~~gg~~~p~lnFaIPi~~l~~il~~~~~~~d~  661 (743)
                      ...+||||+++++|||||||||.+|+||||+++...+.++..  +++|+||++.++++++++...+.+
T Consensus       199 ~~~~iqtda~in~GnSGGpl~n~~G~vIGi~~~~~~~~~~~~--gigfaIP~~~~~~v~~~l~~~g~v  264 (455)
T PRK10139        199 LENFIQTDASINRGNSGGALLNLNGELIGINTAILAPGGGSV--GIGFAIPSNMARTLAQQLIDFGEI  264 (455)
T ss_pred             cceEEEECCccCCCCCcceEECCCCeEEEEEEEEEcCCCCcc--ceEEEEEhHHHHHHHHHHhhcCcc
Confidence            456899999999999999999999999999999877654443  899999999999999999876654

>TIGR02038 protease_degS periplasmic serine pepetdase DegS	Back alignment and domain information

>PRK10898 serine endoprotease; Provisional	Back alignment and domain information

>PRK10942 serine endoprotease; Provisional	Back alignment and domain information

>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family	Back alignment and domain information

>COG0265 DegQ Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PRK10139 serine endoprotease; Provisional	Back alignment and domain information

>PRK10942 serine endoprotease; Provisional	Back alignment and domain information

>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family	Back alignment and domain information

>TIGR02038 protease_degS periplasmic serine pepetdase DegS	Back alignment and domain information

>PRK10898 serine endoprotease; Provisional	Back alignment and domain information

>COG0265 DegQ Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF13365 Trypsin_2: Trypsin-like peptidase domain; PDB: 1Y8T_A 2Z9I_A 3QO6_A 1L1J_A 1QY6_A 2O8L_A 3OTP_E 2ZLE_I 1KY9_A 3CS0_A	Back alignment and domain information

>KOG1320 consensus Serine protease [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF00089 Trypsin: Trypsin; InterPro: IPR001254 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families	Back alignment and domain information

>cd00190 Tryp_SPc Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms	Back alignment and domain information

>smart00020 Tryp_SPc Trypsin-like serine protease	Back alignment and domain information

>KOG1421 consensus Predicted signaling-associated protein (contains a PDZ domain) [General function prediction only]	Back alignment and domain information

>KOG1320 consensus Serine protease [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>COG3591 V8-like Glu-specific endopeptidase [Amino acid transport and metabolism]	Back alignment and domain information

>KOG3627 consensus Trypsin [Amino acid transport and metabolism]	Back alignment and domain information

>PF00863 Peptidase_C4: Peptidase family C4 This family belongs to family C4 of the peptidase classification	Back alignment and domain information

>COG5640 Secreted trypsin-like serine protease [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF03761 DUF316: Domain of unknown function (DUF316) ; InterPro: IPR005514 This is a family of uncharacterised proteins from Caenorhabditis elegans	Back alignment and domain information

>PF05579 Peptidase_S32: Equine arteritis virus serine endopeptidase S32; InterPro: IPR008760 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families	Back alignment and domain information

>PF10459 Peptidase_S46: Peptidase S46; InterPro: IPR019500 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families	Back alignment and domain information

>PF13365 Trypsin_2: Trypsin-like peptidase domain; PDB: 1Y8T_A 2Z9I_A 3QO6_A 1L1J_A 1QY6_A 2O8L_A 3OTP_E 2ZLE_I 1KY9_A 3CS0_A	Back alignment and domain information

>PF10459 Peptidase_S46: Peptidase S46; InterPro: IPR019500 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families	Back alignment and domain information

>PF00548 Peptidase_C3: 3C cysteine protease (picornain 3C); InterPro: IPR000199 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families	Back alignment and domain information

>KOG1421 consensus Predicted signaling-associated protein (contains a PDZ domain) [General function prediction only]	Back alignment and domain information

>PF02907 Peptidase_S29: Hepatitis C virus NS3 protease; InterPro: IPR004109 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families	Back alignment and domain information

>PF08192 Peptidase_S64: Peptidase family S64; InterPro: IPR012985 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families	Back alignment and domain information

>PF00949 Peptidase_S7: Peptidase S7, Flavivirus NS3 serine protease ; InterPro: IPR001850 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families	Back alignment and domain information

>PF00089 Trypsin: Trypsin; InterPro: IPR001254 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families	Back alignment and domain information

>PF00944 Peptidase_S3: Alphavirus core protein ; InterPro: IPR000930 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families	Back alignment and domain information

>PF05580 Peptidase_S55: SpoIVB peptidase S55; InterPro: IPR008763 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		743
3stj_A		345	Crystal Structure Of The Protease + Pdz1 Domain Of		2e-04
4a8a_A		436	Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 1		4e-04
3sti_A		245	Crystal Structure Of The Protease Domain Of Degq Fr		5e-04
3mh5_A		456	Htra Proteases Are Activated By A Conserved Mechani		9e-04

>pdb|3STJ|A Chain A, Crystal Structure Of The Protease + Pdz1 Domain Of Degq From Escherichia Coli Length = 345

Back alignment and structure

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Query: 597 MLETTAAVHPGGSGGAVVNLDGHMIGLVTSNARHGGGTVIPHLNFSIPCAVLRPIFEFAR 656
            ++T A+++ G SGGA++NL+G +IG+ T+    GGG+V   + F+IP  + R + +   
Sbjct: 175 FIQTDASINRGNSGGALLNLNGELIGINTAILAPGGGSV--GIGFAIPSNMARTLAQQLI 232
Query: 657 DMQEV 661
           D  E+
Sbjct: 233 DFGEI 237

PyMOL of 3stj

>pdb|4A8A|A Chain A, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer In Complex With Lysozyme Length = 436

Back alignment and structure

>pdb|3STI|A Chain A, Crystal Structure Of The Protease Domain Of Degq From Escherichia Coli Length = 245

Back alignment and structure

>pdb|3MH5|A Chain A, Htra Proteases Are Activated By A Conserved Mechanism That Can Be Triggered By Distinct Molecular Cues Length = 456

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		743
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-10
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-05
2vid_A		204	Serine protease SPLB; hydrolase; 1.80A {Staphyloco	1e-08
3k6y_A		237	Serine protease, possible membrane-associated seri	4e-08
2as9_A		210	Serine protease; trypsin-like fold, hydrolase; 1.7	2e-07
3lgi_A		237	Protease DEGS; stress-sensor, HTRA, PDZ OMP, hydro	1e-06
1y8t_A		324	Hypothetical protein RV0983; serine protease, stru	1e-06
2w7s_A		200	Serine protease SPLA; hydrolase, family S1; 1.80A	3e-06
3sti_A		245	Protease DEGQ; serine protease, PDZ domain, chaper	3e-06
3stj_A		345	Protease DEGQ; serine protease, PDZ domain, protea	6e-06
2w5e_A		163	Putative serine protease; coiled coil, transmembra	7e-06
1te0_A		318	Protease DEGS; two domains, serine protease, PDZ,	7e-06
1l1j_A		239	Heat shock protease HTRA; hydrolase, serine protei	9e-06
4a8c_A		436	Periplasmic PH-dependent serine endoprotease DEGQ;	1e-05
1ky9_A		448	Protease DO, DEGP, HTRA; protein quality control,	2e-05
1agj_A		242	Epidermolytic toxin A; hydrolase, serine protease;	2e-05
1qtf_A		246	Exfoliative toxin B; serine protease, superantigen	2e-05
3num_A		332	Serine protease HTRA1; DEGP, hydrolase; 2.75A {Hom	4e-05
3qo6_A		348	Protease DO-like 1, chloroplastic; protease, HTRA,	6e-05
1p3c_A		215	Glutamyl-endopeptidase; serine protease, hydrolase	7e-05
3pv2_A		451	DEGQ; trypsin fold, PDZ domain, chaperone protease	1e-04
3tjo_A		231	Serine protease HTRA1; peptidase, hydrolase; HET:	1e-04
1lcy_A		325	HTRA2 serine protease; apoptosis, PDZ domain, casp	2e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 64.5 bits (156), Expect = 1e-10
 Identities = 81/609 (13%), Positives = 184/609 (30%), Gaps = 163/609 (26%)

Query: 57  DTKVAERNWGVNGLIVTVASVVEPFLLPQYRDKDTSEGQPELITGSQIDFLVEGK----- 111
           D +  E  +    ++    SV E   +  +  KD  +    +++  +ID ++  K     
Sbjct: 8   DFETGEHQYQYKDIL----SVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSG 63

Query: 112 -------LRSEKEH------EDVDKGSPEWVTAQLMMLVDIPVSSLALQSLMEASSGLPE 158
                  L S++E       E+V + + +++ + +      P  S+  +  +E    L  
Sbjct: 64  TLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQP--SMMTRMYIEQRDRL-- 119

Query: 159 HEWEVGWSLAPYNNSSQPLMGVVKTSIE---------------SNKISLMESHRPFAMEE 203
             +      A YN S       ++ ++                S K  +       A++ 
Sbjct: 120 --YNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWV-------ALDV 170

Query: 204 SSNLSLMSKSTSRVAILGVSSYLKDLPNIALTPLNKRGDLLLAVGSPFGVL-----SPMH 258
             +  +  K   ++  L + +     P   L  L K   LL  +   +        +   
Sbjct: 171 CLSYKVQCKMDFKIFWLNLKNCNS--PETVLEMLQK---LLYQIDPNWTSRSDHSSNIKL 225

Query: 259 FFNSVSMGSVANCYPPRSTTRSLLMAD------------IRC--------------LPGG 292
             +S+    +      +     LL+              + C              L   
Sbjct: 226 RIHSIQ-AELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAA 284

Query: 293 ---PVFGEH--------------AHFVGILIRPLRQKSGAEIQLVIPWEAIATACSDLLL 335
               +  +H                ++    + L +    E+    P   ++   ++ + 
Sbjct: 285 TTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR----EVLTTNPR-RLSI-IAESIR 338

Query: 336 KEPQNAEKEIHINKGNLN-AVGNSL-LFNSHILNGACCYKY-----EHVDSRCRSPLPIQ 388
                 +   H+N   L   + +SL +           +                 +P  
Sbjct: 339 DGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRK--MFDRLSVFPPSA------HIPTI 390

Query: 389 KALASVCLITIDDGVWASGVLLNDQGLILTNAH---LLEPWRFGKTTVSGWRNGVSF--- 442
                  L+++   +W   +  +D  +++   H   L+E     ++T+S     +     
Sbjct: 391 -------LLSL---IWFDVIK-SDVMVVVNKLHKYSLVEKQPK-ESTIS--IPSIYLELK 436

Query: 443 QPEDSASSGH-TGVDQYQKSQTLPP--KMPKIVDSSVDEHRAYKLSSFSRGHRKIRVRLD 499
              ++  + H + VD Y   +T      +P  +D     H  + L +     R    R+ 
Sbjct: 437 VKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMV 496

Query: 500 HLD-PWIWCDAKIVYV-----CKGPLDVSLLQLGYIPDQLCPIDADFGQPSLGSAAYVIG 553
            LD  ++  + KI +        G +  +L QL +    +C  D  + +        V  
Sbjct: 497 FLDFRFL--EQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYER-------LVNA 547

Query: 554 HGLFGPRCG 562
              F P+  
Sbjct: 548 ILDFLPKIE 556

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>2vid_A Serine protease SPLB; hydrolase; 1.80A {Staphylococcus aureus} Length = 204	Back alignment and structure

>3k6y_A Serine protease, possible membrane-associated serine protease; oxidative stress, disulfide, BENT helix, HY protease; 1.30A {Mycobacterium tuberculosis} PDB: 3k6z_A 3lt3_A Length = 237	Back alignment and structure

>2as9_A Serine protease; trypsin-like fold, hydrolase; 1.70A {Staphylococcus aureus} Length = 210	Back alignment and structure

>3lgi_A Protease DEGS; stress-sensor, HTRA, PDZ OMP, hydrolase, serine PR; 1.65A {Escherichia coli} PDB: 2qf3_A 2qf0_A 2rce_A* 3lh3_A* 3b8j_A 2qgr_A 3lh1_A 3lgy_A 3lgu_A 3lgv_A 3lgw_A 3lgt_A 2r3u_A Length = 237	Back alignment and structure

>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics, PSI, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A Length = 324	Back alignment and structure

>2w7s_A Serine protease SPLA; hydrolase, family S1; 1.80A {Staphylococcus aureus} PDB: 2w7u_A Length = 200	Back alignment and structure

>3sti_A Protease DEGQ; serine protease, PDZ domain, chaperone, hydrolase; 2.60A {Escherichia coli} Length = 245	Back alignment and structure

>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli} Length = 345	Back alignment and structure

>2w5e_A Putative serine protease; coiled coil, transmembrane, thiol protease, RNA replication, ribosomal frameshifting, catalytic triad, membrane; 2.00A {Human astrovirus 1} Length = 163	Back alignment and structure

>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A* 1sot_A 1soz_A 1vcw_A 2r3y_A Length = 318	Back alignment and structure

>1l1j_A Heat shock protease HTRA; hydrolase, serine proteinase; 2.80A {Thermotoga maritima} SCOP: b.47.1.1 Length = 239	Back alignment and structure

>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A Length = 436	Back alignment and structure

>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A Length = 448	Back alignment and structure

>1agj_A Epidermolytic toxin A; hydrolase, serine protease; 1.70A {Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1dua_A 1exf_A 1due_A Length = 242	Back alignment and structure

>1qtf_A Exfoliative toxin B; serine protease, superantigen, hydrolase; 2.40A {Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1dt2_A Length = 246	Back alignment and structure

>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB: 3nzi_A 3nwu_A 2ytw_A 2joa_A Length = 332	Back alignment and structure

>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor, hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana} Length = 348	Back alignment and structure

>1p3c_A Glutamyl-endopeptidase; serine protease, hydrolase; 1.50A {Bacillus intermedius} SCOP: b.47.1.1 PDB: 1p3e_A Length = 215	Back alignment and structure

>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A Length = 451	Back alignment and structure

>3tjo_A Serine protease HTRA1; peptidase, hydrolase; HET: BOG; 2.30A {Homo sapiens} PDB: 3tjn_A 3nwu_A Length = 231	Back alignment and structure

>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1 Length = 325	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		743
d1ky9a2		249	b.47.1.1 (A:11-259) Protease Do (DegP, HtrA), cata	3e-11
d1l1ja_		228	b.47.1.1 (A:) Protease Do (DegP, HtrA), catalytic	3e-10
d1l1ja_		228	b.47.1.1 (A:) Protease Do (DegP, HtrA), catalytic	0.002
d2z9ia2		221	b.47.1.1 (A:6-226) Protease PepD {Mycobacterium tu	3e-08
d2z9ia2		221	b.47.1.1 (A:6-226) Protease PepD {Mycobacterium tu	4e-04
d1lcya2		205	b.47.1.1 (A:6-210) Mitochondrial serine protease H	1e-07
d2qf3a1		210	b.47.1.1 (A:43-252) Stress sensor protease DegS, c	1e-05
d1agja_		242	b.47.1.1 (A:) Epidermolytic (exfoliative) toxin A	6e-05
d1qtfa_		246	b.47.1.1 (A:) Exfoliative toxin B {Staphylococcus	8e-05
d2o8la1		216	b.47.1.1 (A:1-216) V8 protease {Staphylococcus aur	0.004

>d1ky9a2 b.47.1.1 (A:11-259) Protease Do (DegP, HtrA), catalytic domain {Escherichia coli [TaxId: 562]} Length = 249	Back information, alignment and structure


class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Protease Do (DegP, HtrA), catalytic domain
species: Escherichia coli [TaxId: 562]

 Score = 61.9 bits (149), Expect = 3e-11
 Identities = 37/153 (24%), Positives = 64/153 (41%), Gaps = 17/153 (11%)

Query: 502 DPWIWCDAKIVYVCKGPLDVSLLQLGYIPDQLCPID-ADFGQPSLGSAAYVIGHGLFGPR 560
                       V K P     L     P  L  I  AD     +G     IG+      
Sbjct: 106 QLSDGRKFDAKMVGKDPRSDIALIQIQNPKNLTAIKMADSDALRVGDYTVAIGNPFG--- 162

Query: 561 CGLSPSVSSGVVAKVVKANLPSYGQSTLQRNSAYPVMLETTAAVHPGGSGGAVVNLDGHM 620
             L  +V+SG+V+ + ++ L +               ++T AA++ G +GGA+VNL+G +
Sbjct: 163 --LGETVTSGIVSALGRSGLNAENYENF---------IQTDAAINRGNAGGALVNLNGEL 211

Query: 621 IGLVTSNARHGGGTVIPHLNFSIPCAVLRPIFE 653
           IG+ T+     GG +   + F+IP  +++ +  
Sbjct: 212 IGINTAILAPDGGNI--GIGFAIPSNMVKNLTS 242

PyMOL of d1ky9a2

>d1l1ja_ b.47.1.1 (A:) Protease Do (DegP, HtrA), catalytic domain {Thermotoga maritima [TaxId: 2336]} Length = 228	Back information, alignment and structure

>d1l1ja_ b.47.1.1 (A:) Protease Do (DegP, HtrA), catalytic domain {Thermotoga maritima [TaxId: 2336]} Length = 228	Back information, alignment and structure

>d2z9ia2 b.47.1.1 (A:6-226) Protease PepD {Mycobacterium tuberculosis [TaxId: 1773]} Length = 221	Back information, alignment and structure

>d2z9ia2 b.47.1.1 (A:6-226) Protease PepD {Mycobacterium tuberculosis [TaxId: 1773]} Length = 221	Back information, alignment and structure

>d1lcya2 b.47.1.1 (A:6-210) Mitochondrial serine protease HtrA2, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 205	Back information, alignment and structure

>d2qf3a1 b.47.1.1 (A:43-252) Stress sensor protease DegS, catalytic domain {Escherichia coli [TaxId: 562]} Length = 210	Back information, alignment and structure

>d1agja_ b.47.1.1 (A:) Epidermolytic (exfoliative) toxin A {Staphylococcus aureus [TaxId: 1280]} Length = 242	Back information, alignment and structure

>d1qtfa_ b.47.1.1 (A:) Exfoliative toxin B {Staphylococcus aureus [TaxId: 1280]} Length = 246	Back information, alignment and structure

>d2o8la1 b.47.1.1 (A:1-216) V8 protease {Staphylococcus aureus [TaxId: 1280]} Length = 216	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		743
d1ky9a2		249	Protease Do (DegP, HtrA), catalytic domain {Escher	100.0
d1l1ja_		228	Protease Do (DegP, HtrA), catalytic domain {Thermo	100.0
d2qf3a1		210	Stress sensor protease DegS, catalytic domain {Esc	100.0
d2z9ia2		221	Protease PepD {Mycobacterium tuberculosis [TaxId:	100.0
d1lcya2		205	Mitochondrial serine protease HtrA2, catalytic dom	99.97
d1agja_		242	Epidermolytic (exfoliative) toxin A {Staphylococcu	99.92
d1lvmb_		219	TEV protease (nucleat inclusion protein A, NIA) {T	99.9
d1ky9a2		249	Protease Do (DegP, HtrA), catalytic domain {Escher	99.84
d1qtfa_		246	Exfoliative toxin B {Staphylococcus aureus [TaxId:	99.83
d2qaaa1		185	Protease B {Streptomyces griseus, strain k1 [TaxId	99.81
d2o8la1		216	V8 protease {Staphylococcus aureus [TaxId: 1280]}	99.79
d1l1ja_		228	Protease Do (DegP, HtrA), catalytic domain {Thermo	99.71
d2bhga1		199	3C cysteine protease (picornain 3C) {Foot-and-mout	99.68
d1p3ca_		215	Glutamyl endopeptidase {Bacillus intermedius [TaxI	99.67
d2sgaa_		181	Protease A {Streptomyces griseus, strain k1 [TaxId	99.64
d2h5ca1		198	alpha-Lytic protease {Lysobacter enzymogenes, 495	99.63
d2qf3a1		210	Stress sensor protease DegS, catalytic domain {Esc	99.48
d2z9ia2		221	Protease PepD {Mycobacterium tuberculosis [TaxId:	99.44
d1hpga_		187	Glutamic acid-specific protease {Streptomyces gris	99.43
d1bioa_		228	Factor D {Human (Homo sapiens) [TaxId: 9606]}	99.32
d1arba_		263	Achromobacter protease {Achromobacter lyticus, str	99.31
d1lcya2		205	Mitochondrial serine protease HtrA2, catalytic dom	99.28
d1orfa_		232	Granzyme A {Human (Homo sapiens) [TaxId: 9606]}	99.27
d1lo6a_		221	Kallikrein 6 {Human (Homo sapiens) [TaxId: 9606]}	99.27
d1npma_		225	Neuropsin {Mouse (Mus musculus) [TaxId: 10090]}	99.26
d1a7sa_		225	Heparin binding protein, HBP {Human (Homo sapiens)	99.25
d1mzaa_		240	Granzyme K {Human (Homo sapiens) [TaxId: 9606]}	99.25
d1op0a_		234	Venom serine protease {Hundred-pace snake (Agkistr	99.25
d1j16a_		223	Trypsin(ogen) {Rat (Rattus norvegicus) [TaxId: 101	99.25
d1lvmb_		219	TEV protease (nucleat inclusion protein A, NIA) {T	99.24
d2z7fe1		218	Elastase {Human (Homo sapiens) [TaxId: 9606]}	99.23
d1gdna_		224	Trypsin(ogen) {Mold (Fusarium oxysporum) [TaxId: 5	99.21
d1hj8a_		222	Trypsin(ogen) {North atlantic salmon (Salmo salar)	99.21
d1gvza_		237	Prostate specific antigen (PSA kallikrein) {Horse	99.21
d1tona_		235	Tonin {Rat (Rattus rattus) [TaxId: 10117]}	99.2
d1azza_		226	Crab collagenase {Atlantic sand fiddler crab (Uca	99.2
d1si5h_		234	Hepatocyte growth factor, HGF {Human (Homo sapiens	99.19
g2pka.1		232	Kallikrein A {Pig (Sus scrofa) [TaxId: 9823]}	99.19
d1cqqa_		180	3C cysteine protease (picornain 3C) {Human rhinovi	99.19
d1ao5a_		237	Kallikrein-13 {Mouse (Mus musculus) [TaxId: 10090]	99.18
d1xx9a_		237	Coagulation factor XI {Human (Homo sapiens) [TaxId	99.18
d1eq9a_		222	(alpha,gamma)-chymotrypsin(ogen) {Red fire ant (So	99.17
d1sgfa_		228	7S NGF protease subunits {Mouse (Mus musculus) [Ta	99.11
d1nn6a_		224	Chymase (mast cell protease I) {Human (Homo sapien	99.11
d1rjxb_		247	Plasmin(ogen), catalytic domain {Human (Homo sapie	99.09
d1ekbb_		235	Enteropeptidase (enterokinase light chain) {Cow (B	99.08
d1eufa_		224	Duodenase {Cow (Bos taurus) [TaxId: 9913]}	99.08
d1fxya_		228	Coagulation factor Xa-trypsin chimera {Synthetic,	99.07
d2hlca_		230	HL collagenase {Common cattle grub (Hypoderma line	99.06
d1fuja_		221	Myeloblastin, PR3 {Human (Homo sapiens) [TaxId: 96	99.06
d1rrka1		287	Factor B {Human (Homo sapiens) [TaxId: 9606]}	99.05
d2bz6h1		254	Coagulation factor VIIa {Human (Homo sapiens) [Tax	99.04
d2f91a1		237	Trypsin(ogen) {Narrow-clawed crayfish (Pontastacus	99.03
d1hj9a_		223	Trypsin(ogen) {Cow (Bos taurus) [TaxId: 9913]}	99.03
d1fi8a_		227	Granzyme B {Rat (Rattus norvegicus) [TaxId: 10116]	99.02
d1z8ga1		255	Hepsin, catalytic domain {Human (Homo sapiens) [Ta	99.0
g1gg6.1		238	(alpha,gamma)-chymotrypsin(ogen) {Cow (Bos taurus)	99.0
d1elta_		236	Elastase {Salmon (Salmo salar) [TaxId: 8030]}	98.97
g1fiw.1		274	Beta-acrosin {Sheep (Ovis aries) [TaxId: 9940]}	98.95
d2qaaa1		185	Protease B {Streptomyces griseus, strain k1 [TaxId	98.93
d1autc_		240	Activated protein c (autoprothrombin IIa) {Human (	98.93
d1rfna_		235	Coagulation factor IXa, protease domain {Human (Ho	98.93
g1rtf.1		260	Two-chain tissue plasminogen activator (TC)-T-PA {	98.93
g1gj7.1		256	Urokinase-type plasminogen activator (LMW U-PA), c	98.92
d1agja_		242	Epidermolytic (exfoliative) toxin A {Staphylococcu	98.92
d1eaxa_		241	Matriptase MTSP1 {Human (Homo sapiens) [TaxId: 960	98.9
d2fpza1		243	beta-Tryptase {Human (Homo sapiens) [TaxId: 9606]}	98.89
d1fq3a_		227	Granzyme B {Human (Homo sapiens) [TaxId: 9606]}	98.89
d3rp2a_		224	Chymase II (mast cell proteinase II) {Rat (Rattus	98.87
d1os8a_		223	Trypsin {Streptomyces griseus, strain k1 [TaxId: 1	98.86
d1t32a1		224	Cathepsin G {Human (Homo sapiens) [TaxId: 9606]}	98.85
d1elva1		259	Complement C1S protease, catalytic domain {Human (	98.84
d1fona_		232	Procarboxypeptidase A-S6 subunit III (zymogen E) {	98.83
d1brup_		241	Elastase {Pig (Sus scrofa) [TaxId: 9823]}	98.83
d1gvkb_		240	Elastase {Pig (Sus scrofa) [TaxId: 9823]}	98.82
d2qy0b1		240	Complement C1R protease, catalytic domain {Human (	98.8
d1pytd_		251	(alpha,gamma)-chymotrypsin(ogen) {Cow (Bos taurus)	98.8
g1h8d.1		289	Thrombin {Human (Homo sapiens) [TaxId: 9606]}	98.79
d1m9ua_		241	Elastase {Worm (Eisenia fetida) [TaxId: 6396]}	98.77
d2bhga1		199	3C cysteine protease (picornain 3C) {Foot-and-mout	98.72
d2p3ub1		233	Coagulation factor Xa, protease domain {Human (Hom	98.72
d1q3xa1		242	Mannan-binding lectin serine protease 2 (MASP-2),	98.68
d2sgaa_		181	Protease A {Streptomyces griseus, strain k1 [TaxId	98.26
d1l1na_		180	3C cysteine protease (picornain 3C) {Human poliovi	98.14
d2h5ca1		198	alpha-Lytic protease {Lysobacter enzymogenes, 495	98.14
d1qtfa_		246	Exfoliative toxin B {Staphylococcus aureus [TaxId:	97.82
d2o8la1		216	V8 protease {Staphylococcus aureus [TaxId: 1280]}	97.15
d2h6ma1		212	3C cysteine protease (picornain 3C) {Human hepatit	97.01
d1mbma_		198	NSP4 proteinase {Equine arteritis virus, EAV [TaxI	96.65
d1hpga_		187	Glutamic acid-specific protease {Streptomyces gris	96.5
d1p3ca_		215	Glutamyl endopeptidase {Bacillus intermedius [TaxI	94.52
d1cqqa_		180	3C cysteine protease (picornain 3C) {Human rhinovi	93.6
d2fomb1		150	NS3 protease {Dengue virus type 2 [TaxId: 11060]}	91.68
g1dy9.1		187	NS3 protease {Human hepatitis C virus (HCV), diffe	90.6
d1ep5a_		156	Viral capsid protein {Venezuelan equine encephalit	89.54
d1wyka_		152	Viral capsid protein {Sindbis virus [TaxId: 11034]	88.93
d2fp7b1		152	NS3 protease {West nile virus [TaxId: 11082]}	88.92
d1vcpa_		149	Viral capsid protein {Semliki forest virus [TaxId:	86.38

>d1ky9a2 b.47.1.1 (A:11-259) Protease Do (DegP, HtrA), catalytic domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Protease Do (DegP, HtrA), catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=9.8e-37  Score=237.70  Aligned_cols=171  Identities=29%  Similarity=0.524  Sum_probs=142.3

Q ss_pred             EEEEEEEEECC-CEEEECCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             26899999189-76996264346666753000588666455888887889876542233468999998533564110000
Q 004596          403 VWASGVLLNDQ-GLILTNAHLLEPWRFGKTTVSGWRNGVSFQPEDSASSGHTGVDQYQKSQTLPPKMPKIVDSSVDEHRA  481 (743)
Q Consensus       403 ~wGSGviIs~~-GlILTNaHVV~p~~~~~t~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~k~~~i~~~~~~~~~~  481 (743)
                      +.||||+|+++ ||||||+||++          +                                              
T Consensus        76 ~~GSG~iI~~~~g~IlTn~HVv~----------~----------------------------------------------   99 (249)
T d1ky9a2          76 ALGSGVIIDADKGYVVTNNHVVD----------N----------------------------------------------   99 (249)
T ss_dssp             EEEEEEEEETTTTEEEEEHHHHT----------T----------------------------------------------
T ss_pred             CCCCEEEEECCCCEEEEECCCCC----------C----------------------------------------------
T ss_conf             56537998615826986212013----------2----------------------------------------------


Q ss_pred             CCCCCCCCCCEEEEEEECCCCCCEEEEEEEEEECCCCCCEEEEEECCCCCCCCCEECCCC-CCCCCCEEEEEECCCCCCC
Q ss_conf             002334578426999974798731595699974599970799998358999630347999-9999996999911998899
Q 004596          482 YKLSSFSRGHRKIRVRLDHLDPWIWCDAKIVYVCKGPLDVSLLQLGYIPDQLCPIDADFG-QPSLGSAAYVIGHGLFGPR  560 (743)
Q Consensus       482 ~~~~l~~~~~~~I~V~l~~~~~~~W~~a~VV~v~~~~~DIALLkle~~p~~l~pi~l~~s-~i~~Ge~V~vIGyplf~~~  560 (743)
                               ...+.+++.+++.   +.++++.. +...|+|+|+++. +..+++++++++ .+++|+.|+++|||     
T Consensus       100 ---------~~~~~v~~~~~~~---~~a~~~~~-d~~~dlavl~i~~-~~~~~~~~l~~~~~~~~G~~v~aiG~P-----  160 (249)
T d1ky9a2         100 ---------ATVIKVQLSDGRK---FDAKMVGK-DPRSDIALIQIQN-PKNLTAIKMADSDALRVGDYTVAIGNP-----  160 (249)
T ss_dssp             ---------EEEEEEEETTSCE---EEEEEEEE-ETTTTEEEEEESS-CCSCCCCCBCCGGGCCTTCEEEEEECT-----
T ss_pred             ---------CEEEEEEECCCCC---CCCEEEEE-CCCHHHCEEEECC-CCCCEEEECCCCCCCCCCCEEEEEECC-----
T ss_conf             ---------0000143023212---32024675-4550001045136-666437775776767768877999545-----


Q ss_pred             CCCCCEEEEEEEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCEECCCCEEEEEEEEEECCCCCCCCCCEE
Q ss_conf             89999067579941442168877766555688867099991134799866620127951999996220389996567316
Q 004596          561 CGLSPSVSSGVVAKVVKANLPSYGQSTLQRNSAYPVMLETTAAVHPGGSGGAVVNLDGHMIGLVTSNARHGGGTVIPHLN  640 (743)
Q Consensus       561 ~G~~psvt~GiIS~vv~~~~~~~~~~~~~~~~~~~~~IqTtAav~pGnSGGPLin~~G~VIGIvtsna~~~gg~~~p~ln  640 (743)
                      .|+..+++.|+++...+...         .......+|||||++++|||||||||.+|+||||+++.....++..  +++
T Consensus       161 ~g~~~tvt~~~~~~~~~~~~---------~~~~~~~~iqtda~i~~GnSGGPl~n~~G~vIGI~t~~~~~~~~~~--gi~  229 (249)
T d1ky9a2         161 FGLGETVTSGIVSALGRSGL---------NAENYENFIQTDAAINRGNAGGALVNLNGELIGINTAILAPDGGNI--GIG  229 (249)
T ss_dssp             TSSSCEEEEEEEEEESSCC--------------CCCCEEESCCCTTSCCCSEEECTTSCEEEEEECSSTTSCCCS--SSE
T ss_pred             CCCCCCEEECCEEECCCCCC---------CCCCCCCEEEEEEEECCCCCCCEEECCCCEEEEEEEEEECCCCCCC--CEE
T ss_conf             34688562020110133443---------5766555489820245888776188889889999978863678856--579


Q ss_pred             EEEEHHHHHHHHHHHHHCC
Q ss_conf             9981457999999999607
Q 004596          641 FSIPCAVLRPIFEFARDMQ  659 (743)
Q Consensus       641 FaIPi~~l~~il~~l~~~~  659 (743)
                      |+||++.++++++++.++|
T Consensus       230 faIP~~~~~~~~~~l~~~G  248 (249)
T d1ky9a2         230 FAIPSNMVKNLTSQMVEYG  248 (249)
T ss_dssp             EEEEHHHHHHHHHHHHHHS
T ss_pred             EEEEHHHHHHHHHHHHHHC
T ss_conf             9987999999999999749

PyMOL of d1ky9a2

>d1l1ja_ b.47.1.1 (A:) Protease Do (DegP, HtrA), catalytic domain {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d2qf3a1 b.47.1.1 (A:43-252) Stress sensor protease DegS, catalytic domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d2z9ia2 b.47.1.1 (A:6-226) Protease PepD {Mycobacterium tuberculosis [TaxId: 1773]}	Back information, alignment and structure

>d1lcya2 b.47.1.1 (A:6-210) Mitochondrial serine protease HtrA2, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1agja_ b.47.1.1 (A:) Epidermolytic (exfoliative) toxin A {Staphylococcus aureus [TaxId: 1280]}	Back information, alignment and structure

>d1lvmb_ b.47.1.3 (B:) TEV protease (nucleat inclusion protein A, NIA) {Tobacco etch virus, TEV [TaxId: 12227]}	Back information, alignment and structure

>d1ky9a2 b.47.1.1 (A:11-259) Protease Do (DegP, HtrA), catalytic domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1qtfa_ b.47.1.1 (A:) Exfoliative toxin B {Staphylococcus aureus [TaxId: 1280]}	Back information, alignment and structure

>d2qaaa1 b.47.1.1 (A:16-242) Protease B {Streptomyces griseus, strain k1 [TaxId: 1911]}	Back information, alignment and structure

>d2o8la1 b.47.1.1 (A:1-216) V8 protease {Staphylococcus aureus [TaxId: 1280]}	Back information, alignment and structure

>d1l1ja_ b.47.1.1 (A:) Protease Do (DegP, HtrA), catalytic domain {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d2bhga1 b.47.1.4 (A:7-205) 3C cysteine protease (picornain 3C) {Foot-and-mouth disease virus FMDV [TaxId: 12110]}	Back information, alignment and structure

>d1p3ca_ b.47.1.1 (A:) Glutamyl endopeptidase {Bacillus intermedius [TaxId: 1400]}	Back information, alignment and structure

>d2sgaa_ b.47.1.1 (A:) Protease A {Streptomyces griseus, strain k1 [TaxId: 1911]}	Back information, alignment and structure

>d2h5ca1 b.47.1.1 (A:15A-245) alpha-Lytic protease {Lysobacter enzymogenes, 495 [TaxId: 69]}	Back information, alignment and structure

>d2qf3a1 b.47.1.1 (A:43-252) Stress sensor protease DegS, catalytic domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d2z9ia2 b.47.1.1 (A:6-226) Protease PepD {Mycobacterium tuberculosis [TaxId: 1773]}	Back information, alignment and structure

>d1hpga_ b.47.1.1 (A:) Glutamic acid-specific protease {Streptomyces griseus [TaxId: 1911]}	Back information, alignment and structure

>d1bioa_ b.47.1.2 (A:) Factor D {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1arba_ b.47.1.1 (A:) Achromobacter protease {Achromobacter lyticus, strain m497-1 [TaxId: 224]}	Back information, alignment and structure

>d1lcya2 b.47.1.1 (A:6-210) Mitochondrial serine protease HtrA2, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1orfa_ b.47.1.2 (A:) Granzyme A {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1lo6a_ b.47.1.2 (A:) Kallikrein 6 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1npma_ b.47.1.2 (A:) Neuropsin {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1a7sa_ b.47.1.2 (A:) Heparin binding protein, HBP {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1mzaa_ b.47.1.2 (A:) Granzyme K {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1op0a_ b.47.1.2 (A:) Venom serine protease {Hundred-pace snake (Agkistrodon acutus) [TaxId: 36307]}	Back information, alignment and structure

>d1j16a_ b.47.1.2 (A:) Trypsin(ogen) {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d1lvmb_ b.47.1.3 (B:) TEV protease (nucleat inclusion protein A, NIA) {Tobacco etch virus, TEV [TaxId: 12227]}	Back information, alignment and structure

>d2z7fe1 b.47.1.2 (E:16-243) Elastase {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1gdna_ b.47.1.2 (A:) Trypsin(ogen) {Mold (Fusarium oxysporum) [TaxId: 5507]}	Back information, alignment and structure

>d1hj8a_ b.47.1.2 (A:) Trypsin(ogen) {North atlantic salmon (Salmo salar) [TaxId: 8030]}	Back information, alignment and structure

>d1gvza_ b.47.1.2 (A:) Prostate specific antigen (PSA kallikrein) {Horse (Equus caballus) [TaxId: 9796]}	Back information, alignment and structure

>d1tona_ b.47.1.2 (A:) Tonin {Rat (Rattus rattus) [TaxId: 10117]}	Back information, alignment and structure

>d1azza_ b.47.1.2 (A:) Crab collagenase {Atlantic sand fiddler crab (Uca pugilator) [TaxId: 6772]}	Back information, alignment and structure

>d1si5h_ b.47.1.2 (H:) Hepatocyte growth factor, HGF {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1cqqa_ b.47.1.4 (A:) 3C cysteine protease (picornain 3C) {Human rhinovirus 2 [TaxId: 12130]}	Back information, alignment and structure

>d1ao5a_ b.47.1.2 (A:) Kallikrein-13 {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1xx9a_ b.47.1.2 (A:) Coagulation factor XI {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1eq9a_ b.47.1.2 (A:) (alpha,gamma)-chymotrypsin(ogen) {Red fire ant (Solenopsis invicta) [TaxId: 13686]}	Back information, alignment and structure

>d1sgfa_ b.47.1.2 (A:) 7S NGF protease subunits {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1nn6a_ b.47.1.2 (A:) Chymase (mast cell protease I) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1rjxb_ b.47.1.2 (B:) Plasmin(ogen), catalytic domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ekbb_ b.47.1.2 (B:) Enteropeptidase (enterokinase light chain) {Cow (Bos taurus) [TaxId: 9913]}	Back information, alignment and structure

>d1eufa_ b.47.1.2 (A:) Duodenase {Cow (Bos taurus) [TaxId: 9913]}	Back information, alignment and structure

>d1fxya_ b.47.1.2 (A:) Coagulation factor Xa-trypsin chimera {Synthetic, based on Homo sapiens sequence}	Back information, alignment and structure

>d2hlca_ b.47.1.2 (A:) HL collagenase {Common cattle grub (Hypoderma lineatum) [TaxId: 7389]}	Back information, alignment and structure

>d1fuja_ b.47.1.2 (A:) Myeloblastin, PR3 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1rrka1 b.47.1.2 (A:453-739) Factor B {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2bz6h1 b.47.1.2 (H:16-257) Coagulation factor VIIa {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2f91a1 b.47.1.2 (A:16-244) Trypsin(ogen) {Narrow-clawed crayfish (Pontastacus leptodactylus) [TaxId: 6717]}	Back information, alignment and structure

>d1hj9a_ b.47.1.2 (A:) Trypsin(ogen) {Cow (Bos taurus) [TaxId: 9913]}	Back information, alignment and structure

>d1fi8a_ b.47.1.2 (A:) Granzyme B {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d1z8ga1 b.47.1.2 (A:163-417) Hepsin, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1elta_ b.47.1.2 (A:) Elastase {Salmon (Salmo salar) [TaxId: 8030]}	Back information, alignment and structure

>d2qaaa1 b.47.1.1 (A:16-242) Protease B {Streptomyces griseus, strain k1 [TaxId: 1911]}	Back information, alignment and structure

>d1autc_ b.47.1.2 (C:) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1rfna_ b.47.1.2 (A:) Coagulation factor IXa, protease domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1agja_ b.47.1.1 (A:) Epidermolytic (exfoliative) toxin A {Staphylococcus aureus [TaxId: 1280]}	Back information, alignment and structure

>d1eaxa_ b.47.1.2 (A:) Matriptase MTSP1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2fpza1 b.47.1.2 (A:16-244) beta-Tryptase {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1fq3a_ b.47.1.2 (A:) Granzyme B {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d3rp2a_ b.47.1.2 (A:) Chymase II (mast cell proteinase II) {Rat (Rattus rattus) [TaxId: 10117]}	Back information, alignment and structure

>d1os8a_ b.47.1.1 (A:) Trypsin {Streptomyces griseus, strain k1 [TaxId: 1911]}	Back information, alignment and structure

>d1t32a1 b.47.1.2 (A:16-244) Cathepsin G {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1elva1 b.47.1.2 (A:410-668) Complement C1S protease, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1fona_ b.47.1.2 (A:) Procarboxypeptidase A-S6 subunit III (zymogen E) {Cow (Bos taurus) [TaxId: 9913]}	Back information, alignment and structure

>d1brup_ b.47.1.2 (P:) Elastase {Pig (Sus scrofa) [TaxId: 9823]}	Back information, alignment and structure

>d1gvkb_ b.47.1.2 (B:) Elastase {Pig (Sus scrofa) [TaxId: 9823]}	Back information, alignment and structure

>d2qy0b1 b.47.1.2 (B:447-686) Complement C1R protease, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1pytd_ b.47.1.2 (D:) (alpha,gamma)-chymotrypsin(ogen) {Cow (Bos taurus) [TaxId: 9913]}	Back information, alignment and structure

>d1m9ua_ b.47.1.2 (A:) Elastase {Worm (Eisenia fetida) [TaxId: 6396]}	Back information, alignment and structure

>d2bhga1 b.47.1.4 (A:7-205) 3C cysteine protease (picornain 3C) {Foot-and-mouth disease virus FMDV [TaxId: 12110]}	Back information, alignment and structure

>d2p3ub1 b.47.1.2 (B:16-243) Coagulation factor Xa, protease domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1q3xa1 b.47.1.2 (A:445-686) Mannan-binding lectin serine protease 2 (MASP-2), catalytic domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2sgaa_ b.47.1.1 (A:) Protease A {Streptomyces griseus, strain k1 [TaxId: 1911]}	Back information, alignment and structure

>d1l1na_ b.47.1.4 (A:) 3C cysteine protease (picornain 3C) {Human poliovirus 1 Mahoney [TaxId: 12081]}	Back information, alignment and structure

>d2h5ca1 b.47.1.1 (A:15A-245) alpha-Lytic protease {Lysobacter enzymogenes, 495 [TaxId: 69]}	Back information, alignment and structure

>d1qtfa_ b.47.1.1 (A:) Exfoliative toxin B {Staphylococcus aureus [TaxId: 1280]}	Back information, alignment and structure

>d2o8la1 b.47.1.1 (A:1-216) V8 protease {Staphylococcus aureus [TaxId: 1280]}	Back information, alignment and structure

>d2h6ma1 b.47.1.4 (A:1-212) 3C cysteine protease (picornain 3C) {Human hepatitis A virus [TaxId: 208726]}	Back information, alignment and structure

>d1mbma_ b.47.1.3 (A:) NSP4 proteinase {Equine arteritis virus, EAV [TaxId: 11047]}	Back information, alignment and structure

>d1hpga_ b.47.1.1 (A:) Glutamic acid-specific protease {Streptomyces griseus [TaxId: 1911]}	Back information, alignment and structure

>d1p3ca_ b.47.1.1 (A:) Glutamyl endopeptidase {Bacillus intermedius [TaxId: 1400]}	Back information, alignment and structure

>d1cqqa_ b.47.1.4 (A:) 3C cysteine protease (picornain 3C) {Human rhinovirus 2 [TaxId: 12130]}	Back information, alignment and structure

>d2fomb1 b.47.1.3 (B:18-167) NS3 protease {Dengue virus type 2 [TaxId: 11060]}	Back information, alignment and structure

>d1ep5a_ b.47.1.3 (A:) Viral capsid protein {Venezuelan equine encephalitis virus [TaxId: 11036]}	Back information, alignment and structure

>d1wyka_ b.47.1.3 (A:) Viral capsid protein {Sindbis virus [TaxId: 11034]}	Back information, alignment and structure

>d2fp7b1 b.47.1.3 (B:19-170) NS3 protease {West nile virus [TaxId: 11082]}	Back information, alignment and structure

>d1vcpa_ b.47.1.3 (A:) Viral capsid protein {Semliki forest virus [TaxId: 11033]}	Back information, alignment and structure