Citrus Sinensis ID: 004602

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740---
MANRLKEDEKNERIIRGLLKLQDNRRCINCNSLGTQYVCTNFWTFVCTNCSGIHREFTHRVKSVSMAKFTSQEVKALQEGGNQRAKEVLLKEWDPQRQSFPDSSNVERLRNFIKHVYVDRRYTGERNYDKPPRVKMGDKEDSYDIRRDTYQGGSRSPPYEDTYERRYNEQSSPGGRSDDKNSRYGYDERSPGNEQENRQFGDYRRTSPTRPEVINDWRRDDRFGNGRKFEDRRISDGDSKLEGRSPEQPKDPESSSPPVVRPVREILGDNVLPLRISEPPKANGVRVADGSTNTQRTASSGNLGSANENQAEVKLETTGSLIDFDADPKPSPAVAQAQQKTVAQSVVQPASSANDNNWASFDLAPQVKVSQTSSNLNTLETVFSQLSVPASVPGQVSGIPSGAGAPVIAPATNVNVLPGGGSPVASVGHTPFSVFSAAAPAAPAVSGFATFPSANAPAPAPGVTPLLPVSVNAGNSFSMQHQPPLFPTAGGQFTASQFTPPVAGSSNNQQWNTSLAQNAQGPPAAQPAQSVPKPALESASGGLSQPSPVEVKSTGRTALPEDLFTANYSSFPASVPGWQTVPPHGMPMPNFVHSKSTTNPFDVNNDSHPVQAQTFPSMASLQGALPNVSHPPGLLRTSSLTPSPAWMPPQASPYPSAMPSQMPTYAAAIPSQMPTHAPAMPPRPYLGPQVPSNVPPSGHQGMGGLGSEGASFGFMNPDPQLAGRLSASATPQAFTSVGGNPFG
cccHHHHHHHHHHHHHHHHcccccccccccccccccEEEEcccEEEccccHHHHccccccEEEEEcccccHHHHHHHHHHcHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHcHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
ccccccccHHHHHHHHHHHHccccccEcccccccccEEEEEEEEEEEEEccccccccccEEEEEEcccccHHHHHHHHHHcHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccHHHcccccccccccccccHHHccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHcccccccccccccccccccccccc
manrlkedekNERIIRGLLklqdnrrcincnslgtqyvctNFWTFvctncsgihrefTHRVKSVSMAKFTSQEVKALQEGGNQRAKEVLLkewdpqrqsfpdssnvERLRNFIKHVyvdrrytgernydkpprvkmgdkedsydirrdtyqggsrsppyedtyerryneqsspggrsddknsrygyderspgneqenrqfgdyrrtsptrpevindwrrddrfgngrkfedrrisdgdsklegrspeqpkdpesssppvvrpvreilgdnvlplriseppkangvrvadgstntqrtassgnlgsanenqAEVKLEttgslidfdadpkpspavAQAQQKTVAQSvvqpassandnnwasfdlapqvkvsqtssnlnTLETVFSQlsvpasvpgqvsgipsgagapviapatnvnvlpgggspvasvghtpfsvfsaaapaapavsgfatfpsanapapapgvtpllpvsvnagnsfsmqhqpplfptaggqftasqftppvagssnnqqWNTSLaqnaqgppaaqpaqsvpkpalesasgglsqpspvevkstgrtalpedlftanyssfpasvpgwqtvpphgmpmpnfvhsksttnpfdvnndshpvqaqtfpsmaslqgalpnvshppgllrtssltpspawmppqaspypsampsqmptyaaaipsqmpthapampprpylgpqvpsnvppsghqgmgglgsegasfgfmnpdpqlagrlsasatpqaftsvggnpfg
manrlkedekneriirgllklqdnrrcINCNSLGTQYVCTNFWTFVCTNCSGIHREFTHRVKSVSMAKFTSQEVKALQEGGNQRAKEVllkewdpqrqsfpdssnverlrnfikhvyvdrrytgernydkpprvkmgdkedsydirrdtyqggsrsppyedtyerryneqsspggrsddknsrygyderspgneqenrqfgdyrrtsptrpevindwrrddrfgngrkfedrrisdgdsklegrspeqpkdpesssppvvrpvREILGdnvlplriseppkangvrvadgstntqrtassgnlgsanenQAEVKLETTGSLIDFDADPKPSPAVAQAQQKTVAQSVVQPASSANDNNWASFDLAPQVKVSQTSSNLNTLETVFSQLSVPASVPGQVSGIPSGAGAPVIAPATNVNVLPGGGSPVASVGHTPFSVFSAAAPAAPAVSGFATFPSANAPAPAPGVTPLLPVSVNAGNSFSMQHQPPLFPTAGGQFTASQFTPPVAGSSNNQQWNTSLAQNAQGPPAAQPAQSVPKPALESASGGLSQPSPVEVKSTGRTALPEDLFTANYSSFPASVPGWQTVPPHGMPMPNFVHSKSTTNPFDVNNDSHPVQAQTFPSMASLQGALPNVSHPPGLLRTSSLTPSPAWMPPQASPYPSAMPSQMPTYAAAIPSQMPTHAPAMPPRPYLGPQVPSNVPPSGHQGMGGLGSEGASFGFMNPDPQLAGRLSasatpqaftsvggnpfg
MANRLKEDEKNERIIRGLLKLQDNRRCINCNSLGTQYVCTNFWTFVCTNCSGIHREFTHRVKSVSMAKFTSQEVKALQEGGNQRAKEVLLKEWDPQRQSFPDSSNVERLRNFIKHVYVDRRYTGERNYDKPPRVKMGDKEDSYDIRRDTYQGGSRSPPYEDTYERRYNEQSSPGGRSDDKNSRYGYDERSPGNEQENRQFGDYRRTSPTRPEVINDWRRDDRFGNGRKFEDRRISDGDSKLEGRSPEQPKDpesssppvvrpvreILGDNVLPLRISEPPKANGVRVADGSTNTQRTASSGNLGSANENQAEVKLETTGSLIDFDADPKPSPavaqaqqktvaqsvvqPASSANDNNWASFDLAPQVKVSQTSSNLNTLETVFSQLSVPASVPGQVSGIPSGAGAPVIAPATNVNVLPGGGSPVASVGHTpfsvfsaaapaapavsgfaTFPSANAPAPAPGVTPLLPVSVNAGNSFSMQHQPPLFPTAGGQFTASQFTPPVAGSSNNQQWNTSLaqnaqgppaaqpaqsvpkpaLESASGGLSQPSPVEVKSTGRTALPEDLFTANYSSFPASVPGWQTVPPHGMPMPNFVHSKSTTNPFDVNNDSHPVQAQTFPSMASLQGALPNVSHPPGLLRTSSLTPSPAWMPPQASPYPSAMPSQMPTYAAAIPSQMPTHAPAMPPRPYLGPQVPSNVPPSGHQGMGGLGSEGASFGFMNPDPQLAGRLSASATPQAFTSVGGNPFG
*************IIRGLLKLQDNRRCINCNSLGTQYVCTNFWTFVCTNCSGIHREFTHRVKSVSM*****************************************RLRNFIKHVYVDRRYT*****************************************************************************************************************************************************************************************************************************************************************TVF**********************PVIAPATNVNVLPGG***VASVGHTPFSVFS*******************************************************************************************************************************FTANY*******************************************************************************************************************************************************************************
****************GLLKLQDNRRCINCNSLGTQYVCTNFWTFVCTNCSGIHREFTHRVKSVSMAKFTSQEVKALQEGGNQRAKEVLLKEWDPQRQSF*****VERLRNFIKHVYVDRRYTG*******************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************
********EKNERIIRGLLKLQDNRRCINCNSLGTQYVCTNFWTFVCTNCSGIHREFTHRVKSVSMAKFTSQEVKALQEGGNQRAKEVLLKEWDPQRQSFPDSSNVERLRNFIKHVYVDRRYTGERNYDKPPRVKMGDKEDSYDIRRDTYQGGSRSPPYEDTYE***********************************FGDYRRTSPTRPEVINDWRRDDRFGNGRKFEDRRISD**********************VVRPVREILGDNVLPLRISEPPKANGVRVADGSTNTQRTASSGNLGSANENQAEVKLETTGSLIDFDADP************************ANDNNWASFDLAPQVKVSQTSSNLNTLETVFSQLSVPASVPGQVSGIPSGAGAPVIAPATNVNVLPGGGSPVASVGHTPFSVFSAAAPAAPAVSGFATFPSANAPAPAPGVTPLLPVSVNAGNSFSMQHQPPLFPTAGGQFTASQFTPPVAGSSNNQQWNTSLA*************************************TGRTALPEDLFTANYSSFPASVPGWQTVPPHGMPMPNFVHSKSTTNPFDVNNDSHPVQAQTFPSMASLQGALPNVSHPPGLLRTSSLTPSPAWMPPQASPYPSAMPSQMPTYAAAIPSQMPTHAPAMPPRPYLGPQVPSNVPPSGHQGMGGLGSEGASFGFMNPDPQLAGRLSASATPQAFT********
********EKNERIIRGLLKLQDNRRCINCNSLGTQYVCTNFWTFVCTNCSGIHREFTHRVKSVSMAKFTSQEVKALQEGGNQRAKEVLLKEWDPQRQSFPDSSNVERLRNFIKHVYVDRRYTG*********************************************************************************TSPTRPEVINDW*RD*****************************************************************************************************************************************************************************************************************************************************************************************************************************************************DLFTANYSSFPASVPGWQTVPPHGMPMPNFVHSKSTTNPFDVNNDSHPVQAQTFPSMASLQGALPNVSHPPGLLRTSSLTPSPAWMPPQASPYPSAMPSQMPTYAAAIPSQMPTHAPAMPPRPYLGPQVPSNVPPSGHQGMGGLGSEGASFGFMNPDPQLA*********************
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MANRLKEDEKNERIIRGLLKLQDNRRCINCNSLGTQYVCTNFWTFVCTNCSGIHREFTHRVKSVSMAKFTSQEVKALQEGGNQRAKEVLLKEWDPQRQSFPDSSNVERLRNFIKHVYVDRRYTGERNYDKPPRVKMGDKEDSYDIRRDTYQGGSRSPPYEDTYERRYNEQSSPGGRSDDKNSRYGYDERSPGNEQENRQFGDYRRTSPTRPEVINDWRRDDRFGNGRKFEDRRISDGDSKLEGRSPEQPKDPESSSPPVVRPVREILGDNVLPLRISEPPKANGVRVADGSTNTQRTASSGNLGSANENQAEVKLETTGSLIDFDADPKPSPAVAQAQQKTVAQSVVQPASSANDNNWASFDLAPQVKVSQTSSNLNTLETVFSQLSVPASVPGQVSGIPSGAGAPVIAPATNVNVLPGGGSPVASVGHTPFSVFSAAAPAAPAVSGFATFPSANAPAPAPGVTPLLPVSVNAGNSFSMQHQPPLFPTAGGQFTASQFTPPVAGSSNNQQWNTSLAQNAQGPPAAQPAQSVPKPALESASGGLSQPSPVEVKSTGRTALPEDLFTANYSSFPASVPGWQTVPPHGMPMPNFVHSKSTTNPFDVNNDSHPVQAQTFPSMASLQGALPNVSHPPGLLRTSSLTPSPAWMPPQASPYPSAMPSQMPTYAAAIPSQMPTHAPAMPPRPYLGPQVPSNVPPSGHQGMGGLGSEGASFGFMNPDPQLAGRLSASATPQAFTSVGGNPFG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query743 2.2.26 [Sep-21-2011]
Q8RXE7649 Probable ADP-ribosylation no no 0.223 0.255 0.617 4e-58
Q4KLH5561 Arf-GAP domain and FG rep yes no 0.160 0.212 0.355 2e-21
Q8K2K6561 Arf-GAP domain and FG rep yes no 0.160 0.212 0.355 2e-21
Q2TA45562 Arf-GAP domain and FG rep yes no 0.160 0.211 0.355 2e-21
P52594562 Arf-GAP domain and FG rep yes no 0.160 0.211 0.355 3e-21
Q80WC7479 Arf-GAP domain and FG rep no no 0.144 0.223 0.368 2e-16
O95081481 Arf-GAP domain and FG rep no no 0.144 0.222 0.368 2e-16
Q9FL69483 Probable ADP-ribosylation no no 0.207 0.318 0.300 2e-13
Q8IYB5467 Stromal membrane-associat no no 0.114 0.182 0.344 2e-12
Q5EA00429 Stromal membrane-associat no no 0.162 0.282 0.289 2e-12
>sp|Q8RXE7|AGD14_ARATH Probable ADP-ribosylation factor GTPase-activating protein AGD14 OS=Arabidopsis thaliana GN=AGD14 PE=1 SV=2 Back     alignment and function desciption
 Score =  226 bits (577), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 105/170 (61%), Positives = 128/170 (75%), Gaps = 4/170 (2%)

Query: 1   MANRLKEDEKNERIIRGLLKLQDNRRCINCNSLGTQYVCTNFWTFVCTNCSGIHREFTHR 60
           M    +E+E+NE+IIRGL+KL  NRRCINCNSLG QYVCT FWTFVC  CSGIHREFTHR
Sbjct: 1   MMGSKREEERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTTFWTFVCMACSGIHREFTHR 60

Query: 61  VKSVSMAKFTSQEVKALQEGGNQRAKEVLLKEWDPQRQSFPDSSNVERLRNFIKHVYVDR 120
           VKSVSM+KFTS+EV+ LQ GGNQRA+E+ LK WD QRQ  P++SN ER+R FIK+VYV +
Sbjct: 61  VKSVSMSKFTSKEVEVLQNGGNQRAREIYLKNWDHQRQRLPENSNAERVREFIKNVYVQK 120

Query: 121 RYTGERNYDKPPRVKMGDKEDSYDIRR--DTYQGGSRSPPYEDTY-ERRY 167
           +Y G  + DKP +    D   S D+ R  ++Y   S+SPPY+  Y ERRY
Sbjct: 121 KYAGANDADKPSKDSQ-DHVSSEDMTRRANSYHSYSQSPPYDYQYEERRY 169
GTPase-activating protein (GAP) for ADP ribosylation factor (ARF).
Arabidopsis thaliana (taxid: 3702)
>sp|Q4KLH5|AGFG1_RAT Arf-GAP domain and FG repeat-containing protein 1 OS=Rattus norvegicus GN=Agfg1 PE=1 SV=1 Back     alignment and function description
>sp|Q8K2K6|AGFG1_MOUSE Arf-GAP domain and FG repeat-containing protein 1 OS=Mus musculus GN=Agfg1 PE=1 SV=2 Back     alignment and function description
>sp|Q2TA45|AGFG1_BOVIN Arf-GAP domain and FG repeat-containing protein 1 OS=Bos taurus GN=AGFG1 PE=2 SV=1 Back     alignment and function description
>sp|P52594|AGFG1_HUMAN Arf-GAP domain and FG repeat-containing protein 1 OS=Homo sapiens GN=AGFG1 PE=1 SV=2 Back     alignment and function description
>sp|Q80WC7|AGFG2_MOUSE Arf-GAP domain and FG repeat-containing protein 2 OS=Mus musculus GN=Agfg2 PE=1 SV=1 Back     alignment and function description
>sp|O95081|AGFG2_HUMAN Arf-GAP domain and FG repeat-containing protein 2 OS=Homo sapiens GN=AGFG2 PE=1 SV=2 Back     alignment and function description
>sp|Q9FL69|AGD5_ARATH Probable ADP-ribosylation factor GTPase-activating protein AGD5 OS=Arabidopsis thaliana GN=AGD5 PE=1 SV=1 Back     alignment and function description
>sp|Q8IYB5|SMAP1_HUMAN Stromal membrane-associated protein 1 OS=Homo sapiens GN=SMAP1 PE=1 SV=2 Back     alignment and function description
>sp|Q5EA00|SMAP2_BOVIN Stromal membrane-associated protein 2 OS=Bos taurus GN=SMAP2 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query743
359484370759 PREDICTED: uncharacterized protein LOC10 0.981 0.960 0.622 0.0
356529609674 PREDICTED: uncharacterized protein LOC10 0.886 0.977 0.544 0.0
356527795691 PREDICTED: uncharacterized protein LOC10 0.909 0.978 0.544 0.0
449521856711 PREDICTED: uncharacterized LOC101209764 0.928 0.970 0.548 0.0
356511345687 PREDICTED: uncharacterized protein LOC10 0.905 0.979 0.533 0.0
297743304734 unnamed protein product [Vitis vinifera] 0.940 0.952 0.521 0.0
357521059688 hypothetical protein MTR_8g103750 [Medic 0.900 0.972 0.549 0.0
225442683740 PREDICTED: probable ADP-ribosylation fac 0.931 0.935 0.506 0.0
357500413698 Arf-GAP domain and FG repeats-containing 0.882 0.939 0.495 0.0
224142117649 predicted protein [Populus trichocarpa] 0.510 0.583 0.744 1e-164
>gi|359484370|ref|XP_002281316.2| PREDICTED: uncharacterized protein LOC100249171 [Vitis vinifera] gi|297738855|emb|CBI28100.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  844 bits (2181), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 481/773 (62%), Positives = 552/773 (71%), Gaps = 44/773 (5%)

Query: 1   MANRLKEDEKNERIIRGLLKLQDNRRCINCNSLGTQYVCTNFWTFVCTNCSGIHREFTHR 60
           MANR+KEDEKNERIIRGLLKL +NRRCINCNSLG QYVCTNFWTFVCT CSGIHREFTHR
Sbjct: 1   MANRMKEDEKNERIIRGLLKLPENRRCINCNSLGPQYVCTNFWTFVCTTCSGIHREFTHR 60

Query: 61  VKSVSMAKFTSQEVKALQEGGNQRAKEVLLKEWDPQRQSFPDSSNVERLRNFIKHVYVDR 120
           VKSVSMAKFTSQEV +LQ GGN+R KE   KEWDPQR SFPDSSN+ERLR+FIKHVYVDR
Sbjct: 61  VKSVSMAKFTSQEVSSLQRGGNERVKEFYFKEWDPQRHSFPDSSNIERLRDFIKHVYVDR 120

Query: 121 RYTGERNYDKPPRVKMGDKEDSYDIRR-DTYQGGSRSPPYEDTYERRYNEQSSPGGRSDD 179
           RY+GER++DKPPRVKMGDKE+ Y+ R+ D YQGGSRSPPYED+Y+RRY++Q SPGGRSDD
Sbjct: 121 RYSGERSFDKPPRVKMGDKEEPYENRKMDNYQGGSRSPPYEDSYDRRYSDQRSPGGRSDD 180

Query: 180 KNSRYGYD-ERSPGNEQENRQFGDYRRTSPTRPEVINDWRRDDRFGNGRKFEDRRISDGD 238
           KN RYGYD  RSPG++ ENRQ GDYRR SP RPE++NDWRR+DRFGNGRK      SD +
Sbjct: 181 KNFRYGYDGRRSPGSDLENRQHGDYRR-SPVRPEIVNDWRREDRFGNGRK------SDRE 233

Query: 239 SKLEGRSPEQPKDPESSSPPVVRPVREILGDNVLPLRISEPPKANGVRVADGSTNTQRTA 298
           +  EGRSP+  KD ++SSPP+VRPVREILGDNV PLR+ EPPKANG RV DG   TQRTA
Sbjct: 234 TNREGRSPDHQKDLDASSPPMVRPVREILGDNVSPLRVIEPPKANGGRVGDGFARTQRTA 293

Query: 299 SSGNLGSANENQAEVKLETTGSLIDFDADPKPSPA--VAQAQQKTVAQSVVQPASSANDN 356
           SS +LGS+N N  E+K E +G LIDFDADP+P  A  V Q QQ  V Q++ QP SS+ND 
Sbjct: 294 SSSSLGSSNGNPGELKRENSGILIDFDADPEPPVAATVPQTQQPPV-QTIAQPISSSND- 351

Query: 357 NWASFDLAPQVKVSQTSSNLNTLETVFSQLSVPASVPGQVSGIPSGAGAPVIAPATNVNV 416
           NWASFD A + KVSQ  SN+N LETV SQLSVPASVPG  SG+P+  GAP   P  NV+V
Sbjct: 352 NWASFDFATEAKVSQAPSNVNALETVLSQLSVPASVPGHGSGVPNSGGAPTAVPVGNVSV 411

Query: 417 LP-GGGSPVASVGHTPFSVFSAAAPAAPAVSGFATFPSANAPAPAPGVTPLLPVSVNAGN 475
           LP  G S    V   P S F   APA   V+ FA FP A A A APG+TP+L    + GN
Sbjct: 412 LPMSGDSLFPPVRPIPTSPFLGGAPA--PVNTFAAFPPAAAAAAAPGLTPML--HGHDGN 467

Query: 476 SF----------SMQHQP-PLFPTAGGQFTASQFTPPVAGSSNNQQWNTSLAQNAQGP-- 522
           SF          SMQ+Q   LFP  G Q  A QF P V G+S NQQWN+ L  N QGP  
Sbjct: 468 SFVKVTGAGQWPSMQYQQHSLFPDTGSQSIAQQFAPSVGGTSTNQQWNSPLLPNTQGPFS 527

Query: 523 -PAAQPAQSVPKPALESASGGLSQPSPVEVKSTGRTALPEDLFTANYSSFPASVPGWQTV 581
            PAAQ  Q+V KP +  AS   S P PVEVK  GR  LP DLF A Y      VPGWQT 
Sbjct: 528 APAAQAPQTVSKPQV-VASSLSSPPLPVEVKPAGRKELPLDLFAATYQPISMQVPGWQTG 586

Query: 582 PPHGM----------PMPN-FVHSKSTTNPFDVNNDSHPVQAQTFPSMASLQGALPNVSH 630
           PPHGM          P+P+ F HS  +TNPFD+NN+  P QA TFPSMASLQG+LPN+  
Sbjct: 587 PPHGMGFHLQYNTAAPLPSTFSHSSKSTNPFDLNNEPPPAQAPTFPSMASLQGSLPNMPP 646

Query: 631 PPGLLRTSSLTPSPAWMPPQASPYPSAMPSQMPTYAAAIPSQMPTHAPAMPPRPYLGPQV 690
             GLL +SS      W PPQ+S YP AMP Q P Y + +P Q+P +A  MPPR Y+G QV
Sbjct: 647 SMGLLHSSSAGTQSTWTPPQSSLYPLAMPPQAPPYVSGMPPQVPPYASGMPPRAYMGQQV 706

Query: 691 PSNVPPSGHQGMGGLGSEGASFGFMNPDPQLAGRLSASATPQAFTSVGGNPFG 743
           P  +PPS HQG+G  GSE A+F  +NP+  + GR SA A     +SVGGNPFG
Sbjct: 707 PGAIPPSSHQGVGSFGSEDAAFSSLNPNHLIGGRSSAPAALDKLSSVGGNPFG 759

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356529609|ref|XP_003533382.1| PREDICTED: uncharacterized protein LOC100817254 [Glycine max] Back     alignment and taxonomy information
>gi|356527795|ref|XP_003532492.1| PREDICTED: uncharacterized protein LOC100815114 [Glycine max] Back     alignment and taxonomy information
>gi|449521856|ref|XP_004167945.1| PREDICTED: uncharacterized LOC101209764 [Cucumis sativus] Back     alignment and taxonomy information
>gi|356511345|ref|XP_003524387.1| PREDICTED: uncharacterized protein LOC100781002 [Glycine max] Back     alignment and taxonomy information
>gi|297743304|emb|CBI36171.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|357521059|ref|XP_003630818.1| hypothetical protein MTR_8g103750 [Medicago truncatula] gi|355524840|gb|AET05294.1| hypothetical protein MTR_8g103750 [Medicago truncatula] Back     alignment and taxonomy information
>gi|225442683|ref|XP_002280037.1| PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD14-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|357500413|ref|XP_003620495.1| Arf-GAP domain and FG repeats-containing protein [Medicago truncatula] gi|355495510|gb|AES76713.1| Arf-GAP domain and FG repeats-containing protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|224142117|ref|XP_002324405.1| predicted protein [Populus trichocarpa] gi|222865839|gb|EEF02970.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query743
TAIR|locus:2142115602 NIG "NSP (nuclear shuttle prot 0.308 0.380 0.558 5e-89
TAIR|locus:2125697628 AT4G32630 [Arabidopsis thalian 0.304 0.359 0.483 5e-79
ASPGD|ASPL0000049357565 AN1931 [Emericella nidulans (t 0.166 0.219 0.306 2.4e-19
UNIPROTKB|Q2TA45562 AGFG1 "Arf-GAP domain and FG r 0.157 0.208 0.361 5e-19
UNIPROTKB|B8ZZY2541 AGFG1 "Arf-GAP domain and FG r 0.157 0.216 0.361 1.1e-18
MGI|MGI:1333754561 Agfg1 "ArfGAP with FG repeats 0.251 0.333 0.297 1.2e-18
UNIPROTKB|P52594562 AGFG1 "Arf-GAP domain and FG r 0.157 0.208 0.361 1.3e-18
ZFIN|ZDB-GENE-040426-1520547 agfg1b "ArfGAP with FG repeats 0.157 0.213 0.361 2.6e-18
RGD|1560041560 Agfg1 "ArfGAP with FG repeats 0.251 0.333 0.292 2.6e-18
RGD|1310527561 Agfg1-ps1 "ArfGAP with FG repe 0.251 0.333 0.292 2.6e-18
TAIR|locus:2142115 NIG "NSP (nuclear shuttle protein)-interacting GTPase" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 645 (232.1 bits), Expect = 5.0e-89, Sum P(2) = 5.0e-89
 Identities = 148/265 (55%), Positives = 177/265 (66%)

Query:     1 MANRLKEDEKNERIIRGLLKLQDNRRCINCNSLGTQYVCTNFWTFVCTNCSGIHREFTHR 60
             MA R+KEDEKNE+IIR LLKL +N+RCINCNSLG QYVCT FWTFVCTNCSGIHREFTHR
Sbjct:     1 MAGRVKEDEKNEKIIRSLLKLPENKRCINCNSLGPQYVCTTFWTFVCTNCSGIHREFTHR 60

Query:    61 VKSVSMAKFTSQEVKALQEGGNQRAKEVLLKEWDPQRQSFPDSSNVERLRNFIKHVYVDR 120
             VKS+SMAKFTSQEV AL+EGGNQ AK++  K  D QRQS PD SNVERLR+FI+HVYV++
Sbjct:    61 VKSISMAKFTSQEVTALKEGGNQHAKDIYFKGLDQQRQSVPDGSNVERLRDFIRHVYVNK 120

Query:   121 RYTGERNYDKPPRVKMGDKEDSYDIRRDTYQGGSRSPPYEDTYERRYNEQSSPGGRSD-- 178
             RYT E+N DK P           + R  +   GSRSPPYED Y+RRY ++SSPGGRS   
Sbjct:   121 RYTNEKNDDKSPS----------ETRSSS---GSRSPPYEDGYDRRYGDRSSPGGRSPGF 167

Query:   179 DKNSRYGYDER-SPG-----NE--QENRQFGDYRRTSPT---RPEVINDWRRDDRFGNGR 227
             +  SR   + R SP      N+  +E+R FG  R+TS      PE + D       G+  
Sbjct:   168 ETGSRNAVNNRKSPARPEILNDWRREDR-FGG-RKTSEEGSQSPEQVKD------LGSAS 219

Query:   228 KFEDRRISD--GDSKLEGRSPEQPK 250
                 R + +  GDS +  R  E PK
Sbjct:   220 PPVARPVREILGDSVIPLRVGEPPK 244
GO:0005737 "cytoplasm" evidence=ISM;IDA
GO:0008060 "ARF GTPase activator activity" evidence=IEA
GO:0008270 "zinc ion binding" evidence=IEA
GO:0032312 "regulation of ARF GTPase activity" evidence=IEA
GO:0005829 "cytosol" evidence=IDA
GO:0003924 "GTPase activity" evidence=IDA
GO:0005525 "GTP binding" evidence=IDA
GO:0006913 "nucleocytoplasmic transport" evidence=IDA
GO:0009615 "response to virus" evidence=IMP
TAIR|locus:2125697 AT4G32630 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ASPGD|ASPL0000049357 AN1931 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
UNIPROTKB|Q2TA45 AGFG1 "Arf-GAP domain and FG repeat-containing protein 1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|B8ZZY2 AGFG1 "Arf-GAP domain and FG repeat-containing protein 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:1333754 Agfg1 "ArfGAP with FG repeats 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|P52594 AGFG1 "Arf-GAP domain and FG repeat-containing protein 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-1520 agfg1b "ArfGAP with FG repeats 1b" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
RGD|1560041 Agfg1 "ArfGAP with FG repeats 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
RGD|1310527 Agfg1-ps1 "ArfGAP with FG repeats 1, pseudogene 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query743
PLN03131705 PLN03131, PLN03131, hypothetical protein; Provisio 4e-74
PLN03119648 PLN03119, PLN03119, putative ADP-ribosylation fact 9e-54
pfam01412117 pfam01412, ArfGap, Putative GTPase activating prot 6e-40
smart00105119 smart00105, ArfGap, Putative GTP-ase activating pr 2e-20
COG5347319 COG5347, COG5347, GTPase-activating protein that r 3e-12
PLN03114395 PLN03114, PLN03114, ADP-ribosylation factor GTPase 1e-04
PRK12323700 PRK12323, PRK12323, DNA polymerase III subunits ga 2e-04
PHA03247 3151 PHA03247, PHA03247, large tegument protein UL36; P 4e-04
PHA032473151 PHA03247, PHA03247, large tegument protein UL36; P 0.001
pfam09770 804 pfam09770, PAT1, Topoisomerase II-associated prote 0.001
pfam03154 979 pfam03154, Atrophin-1, Atrophin-1 family 0.001
PRK07764824 PRK07764, PRK07764, DNA polymerase III subunits ga 0.002
PHA03247 3151 PHA03247, PHA03247, large tegument protein UL36; P 0.003
pfam03154 979 pfam03154, Atrophin-1, Atrophin-1 family 0.003
PRK07764824 PRK07764, PRK07764, DNA polymerase III subunits ga 0.003
PRK07003 830 PRK07003, PRK07003, DNA polymerase III subunits ga 0.004
>gnl|CDD|178677 PLN03131, PLN03131, hypothetical protein; Provisional Back     alignment and domain information 
 Score =  253 bits (648), Expect = 4e-74
 Identities = 231/725 (31%), Positives = 324/725 (44%), Gaps = 72/725 (9%)

Query: 6   KEDEKNERIIRGLLKLQDNRRCINCNSLGTQYVCTNFWTFVCTNCSGIHREFTHRVKSVS 65
           KE+E+NE+IIRGL+KL  NRRCINCNSLG Q+VCTNFWTF+C  CSGIHREFTHRVKSVS
Sbjct: 5   KEEERNEKIIRGLMKLPPNRRCINCNSLGPQFVCTNFWTFICMTCSGIHREFTHRVKSVS 64

Query: 66  MAKFTSQEVKALQEGGNQRAKEVLLKEWDPQRQSFPDSSNVERLRNFIKHVYVDRRYTGE 125
           M+KFTSQ+V+ALQ GGNQRA+E+ LK+WD QRQ  PD+S V+++R FIK +YVD++Y G 
Sbjct: 65  MSKFTSQDVEALQNGGNQRAREIYLKDWDQQRQRLPDNSKVDKIREFIKDIYVDKKYAGG 124

Query: 126 RNYDKPPR--VKMGDKEDSYDIRRDTYQGGSRSPPYEDTYE-RRYNEQSSPGGRSDDKNS 182
           + +DKPPR   ++   ED    R  +Y   S+SPPY+  YE RRY +Q+           
Sbjct: 125 KTHDKPPRDLQRIRSHEDETR-RACSYHSYSQSPPYDFQYEDRRYGKQA----------- 172

Query: 183 RYGYDERSPGNEQE-NRQFGDYRRTSPTRPEVINDWRRDDRFGNG---RKFEDRRISDGD 238
             G   R PG+++  N         SPTR   +ND   +DRF N        D  +S G 
Sbjct: 173 --GILTRKPGSDRGLNVGKMASFICSPTR---LNDRMFEDRFANEGSVSGVSDYSVSSGG 227

Query: 239 SKLE--GRSPEQPKDPESSSPPVVRPVREILGDNVLPLRISEPPKANGVRVADGSTNTQR 296
             +     SP   KD   S P  ++P ++ILG++V   RI     A   + A+G  + QR
Sbjct: 228 DLVRSGAESPNFQKDIAFSPP--IQPPKDILGEDVQQRRIDLFSAALCKQGAEGCPHIQR 285

Query: 297 TASSGNLGSANENQAEVKLETTGSLIDFDADPKPSPAVAQAQQKTVAQSVVQPASSANDN 356
           +AS G++GS +     +K   +GSL D  A+ +   A    Q K  A   +  + S    
Sbjct: 286 SASLGSIGSFDSLSVSIKSFNSGSLADIVAEAE--QAAGNHQDKMPAFPRMAGSGS---- 339

Query: 357 NWASFDLAPQVKVSQTSSNLNTLETVFSQLSVPASVPGQVSGIPSGAGAPVI-APATNVN 415
             AS D        + ++ +     +F   +   + P  +  IP    AP I A      
Sbjct: 340 -HASLDHFKAPVAPEAAAPMAPPIDLFQLPATSPAPPVDLFEIPPLDPAPAINAYQPPQT 398

Query: 416 VLPGG-GSPVASVGHTPFSVFSAAAP--AAPAVSGFATFPSANAPAPAPGVTPLLPVSVN 472
            LP               +     +P  + P   G+ATF      A  PG   L P S+ 
Sbjct: 399 SLPSSIDLFGGITQQQSINSLDEKSPELSIPKNEGWATFDGIQPIASTPGNENLTPFSIG 458

Query: 473 AGNSFSMQHQPPLFPTAGGQFTASQFTPPVAGSSNNQQWNTSLAQ-------NAQGPPAA 525
              + S           G Q+   Q +     +S    W   L         +AQ   A 
Sbjct: 459 PSMAGSANFDQVPSLDKGMQWPPFQNSSDEESASGPAPWLGDLHNVEAPDNTSAQNWNAF 518

Query: 526 QPAQSVPKPALE-----SASGGLSQPSPVEVKSTGRTAL------------PEDLFTANY 568
           +   SV    LE     S     +   P   +  G  AL            P        
Sbjct: 519 EFDDSVAGIPLEGIKQSSEPQTAANMPPTADQLIGCKALEDFNKDGIKRTAPHGQGELPG 578

Query: 569 SSFPASVPGWQTVPPHGMPMPNFVHSKS----TTNPFDVNNDSHPVQAQTFPSMASLQGA 624
              P+ +    +  P   P+     S +    + NPFD+  DS       F  M+SL+ A
Sbjct: 579 LDEPSDILAEPSYTPPAHPIMEHAQSHANDHKSINPFDLPYDSDLEPGNMFLDMSSLEAA 638

Query: 625 LPNVSHPPGLLRTSSLTPSPAWMP--PQASPYPSAMPSQMPTYAAAIPSQMPTHAPAMPP 682
           LP+   P   L +    P   W P     +  P+A    +   A   P+    +     P
Sbjct: 639 LPDAHLPSAFLGSGMTEP---WFPQDLAMTYIPAAPQGGLAYMAGQAPNPQLGNVQTQGP 695

Query: 683 RPYLG 687
             ++G
Sbjct: 696 VAFVG 700

Length = 705
>gnl|CDD|178666 PLN03119, PLN03119, putative ADP-ribosylation factor GTPase-activating protein AGD14; Provisional Back     alignment and domain information
>gnl|CDD|216485 pfam01412, ArfGap, Putative GTPase activating protein for Arf Back     alignment and domain information
>gnl|CDD|214518 smart00105, ArfGap, Putative GTP-ase activating proteins for the small GTPase, ARF Back     alignment and domain information
>gnl|CDD|227651 COG5347, COG5347, GTPase-activating protein that regulates ARFs (ADP-ribosylation factors), involved in ARF-mediated vesicular transport [Intracellular trafficking and secretion] Back     alignment and domain information
>gnl|CDD|178661 PLN03114, PLN03114, ADP-ribosylation factor GTPase-activating protein AGD10; Provisional Back     alignment and domain information
>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional Back     alignment and domain information
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional Back     alignment and domain information
>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 Back     alignment and domain information
>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family Back     alignment and domain information
>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional Back     alignment and domain information
>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family Back     alignment and domain information
>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 743
PLN03131705 hypothetical protein; Provisional 100.0
PLN03119648 putative ADP-ribosylation factor GTPase-activating 100.0
KOG0702524 consensus Predicted GTPase-activating protein [Sig 100.0
KOG0703287 consensus Predicted GTPase-activating protein [Sig 100.0
PF01412116 ArfGap: Putative GTPase activating protein for Arf 100.0
smart00105112 ArfGap Putative GTP-ase activating proteins for th 100.0
COG5347319 GTPase-activating protein that regulates ARFs (ADP 99.97
PLN03114395 ADP-ribosylation factor GTPase-activating protein 99.93
KOG0704386 consensus ADP-ribosylation factor GTPase activator 99.9
KOG0705749 consensus GTPase-activating protein Centaurin gamm 99.9
KOG0706454 consensus Predicted GTPase-activating protein [Sig 99.88
KOG0521785 consensus Putative GTPase activating proteins (GAP 99.81
KOG0818669 consensus GTPase-activating proteins of the GIT fa 99.71
KOG1117 1186 consensus Rho- and Arf-GTPase activating protein A 99.66
KOG0702524 consensus Predicted GTPase-activating protein [Sig 97.61
PLN03131705 hypothetical protein; Provisional 95.29
KOG0521785 consensus Putative GTPase activating proteins (GAP 91.41
PF0064342 zf-B_box: B-box zinc finger; InterPro: IPR000315 Z 81.25
>PLN03131 hypothetical protein; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.3e-102  Score=858.60  Aligned_cols=613  Identities=34%  Similarity=0.502  Sum_probs=484.0

Q ss_pred             CcchhhhhHHHHHHHHHHHcCCCCCCCcCCCCCCCCeeEccceehhhhhhhhhhhcCCCceeecccCCCCHHHHHHHHhc
Q 004602            1 MANRLKEDEKNERIIRGLLKLQDNRRCINCNSLGTQYVCTNFWTFVCTNCSGIHREFTHRVKSVSMAKFTSQEVKALQEG   80 (743)
Q Consensus         1 M~sr~keder~ekiLr~Llk~pgNk~CADCGs~~P~WaSiN~GVFVC~~CSGIHR~LGhrVKSlsLD~Wt~eEV~~m~~g   80 (743)
                      |++| |++|+++++|++|+++++|++||||++++|+|||+|||||||++|+||||+|+||||||+||+|+++||++|+.+
T Consensus         1 m~Sk-kqqErnekiLreLlk~PgNk~CADCga~~P~WASiNlGIFICi~CSGIHRsLghRVKSVTLD~WtdeEV~~Mk~g   79 (705)
T PLN03131          1 MGSR-KEEERNEKIIRGLMKLPPNRRCINCNSLGPQFVCTNFWTFICMTCSGIHREFTHRVKSVSMSKFTSQDVEALQNG   79 (705)
T ss_pred             Ccch-HHHHHHHHHHHHHhhCcCCCccccCCCCCCCeeEeccceEEchhchhhhcccCcccccccCCCCCHHHHHHHHHh
Confidence            8999 999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHhhcCCCCCCCCCCCChHHHHHHHHHHHHhhcccccCCCCCCCCCCCCCCCCccccccc-cCCCCCCCCCCC
Q 004602           81 GNQRAKEVLLKEWDPQRQSFPDSSNVERLRNFIKHVYVDRRYTGERNYDKPPRVKMGDKEDSYDIRR-DTYQGGSRSPPY  159 (743)
Q Consensus        81 GN~~aN~i~Ea~~~~~~~p~Pdssd~~~lreFIraKY~eKrF~~~~~~DkPpRl~~gdkeds~E~Rr-~s~~s~sRSppy  159 (743)
                      ||+++|+|||++|+..+.+.|+..+.+++|+|||+|||+|||+.....+++++.....+.+..|+|| ++|++|+|||+|
T Consensus        80 GN~~AN~iyeanwd~~r~~lP~~sd~ekrr~FIR~KYVeKRFa~~~s~d~pprd~q~~r~~e~e~rr~~syh~~SqSPpY  159 (705)
T PLN03131         80 GNQRAREIYLKDWDQQRQRLPDNSKVDKIREFIKDIYVDKKYAGGKTHDKPPRDLQRIRSHEDETRRACSYHSYSQSPPY  159 (705)
T ss_pred             ccHHHHHHHHhhcccccCCCCCCccHHHHHHHHHHHHhhhhhhcCCCCCCCchhhhhhhcccccccccccccCCCcCCCc
Confidence            9999999999999988778888888888999999999999999999999999887777777789999 999999999999


Q ss_pred             chhhh-hccccCCCCCCCCccccccCCCCCCCCCchhhh--cccCCCccCCCCCcccccccccccccCCCC---CCCCcc
Q 004602          160 EDTYE-RRYNEQSSPGGRSDDKNSRYGYDERSPGNEQEN--RQFGDYRRTSPTRPEVINDWRRDDRFGNGR---KFEDRR  233 (743)
Q Consensus       160 dd~~e-rRy~~rss~~~R~~dkl~rmgydd~~~~~d~l~--~~~G~~~r~sP~~~e~v~d~~~~Dr~~~~~---~~~~~r  233 (743)
                      +++|| |||+++..+++|+             +++|+..  +|+|+|+| ||+|+   +|||+||||+++.   +++|++
T Consensus       160 ~~~yedrRygk~~~~~~R~-------------pg~d~~~~~~k~~~~~~-SP~r~---~d~~~eDrf~ne~~~~r~~d~s  222 (705)
T PLN03131        160 DFQYEDRRYGKQAGILTRK-------------PGSDRGLNVGKMASFIC-SPTRL---NDRMFEDRFANEGSVSGVSDYS  222 (705)
T ss_pred             ccccccccccccccccccC-------------Ccccccccccccccccc-Cchhh---hhhhhhcccccCCCCccccccc
Confidence            99998 6899998888887             7777764  99999999 99996   9999999999996   667777


Q ss_pred             cCCCC--CccCCCCCCCCCCCCCCCCCccCchhhhccCCCCCcccCCCCCCCCCccCCCCCcccccCCCCCCCCCCCChh
Q 004602          234 ISDGD--SKLEGRSPEQPKDPESSSPPVVRPVREILGDNVLPLRISEPPKANGVRVADGSTNTQRTASSGNLGSANENQA  311 (743)
Q Consensus       234 ~s~~~--~~~~~~sp~~~Kd~~~sspp~~~~~~~ilg~~v~~lr~~~~~~~~~~~~~~g~~~~qrt~~~~~~~s~~~~~~  311 (743)
                      +|+++  .+.+.+|||++||+.. || +|||+|+||||||++|||++|+|++..++++|.+++|||+|+|+++|++|+++
T Consensus       223 ~ss~~~~~r~~~~SP~~~k~~~~-Sp-~v~p~r~ilg~n~~~~~v~~~s~~~~~~~~~~~~~~Qrt~Ssgs~gS~dg~s~  300 (705)
T PLN03131        223 VSSGGDLVRSGAESPNFQKDIAF-SP-PIQPPKDILGEDVQQRRIDLFSAALCKQGAEGCPHIQRSASLGSIGSFDSLSV  300 (705)
T ss_pred             ccccccccccCCCCCCcccccCC-CC-CcccchhhccccccccccCCCcccccccccccccccccccccCcccccCCCcc
Confidence            77655  4557799999999874 45 66999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhccCccccCCCCCCCChhhhhhhhhhhcccccccCCCCCCCCCccccCCcCcccccCCCCCChhHHHhhccCCCCC
Q 004602          312 EVKLETTGSLIDFDADPKPSPAVAQAQQKTVAQSVVQPASSANDNNWASFDLAPQVKVSQTSSNLNTLETVFSQLSVPAS  391 (743)
Q Consensus       312 ~~k~~~s~sLiDf~~~~ep~~~~~~~~qt~~~~~~~~~~~s~~~~~wAsfd~~~~~~~~~~~s~~n~le~~l~qlsv~~s  391 (743)
                      ++|+++++|||||++|+|+..+.   .|.++.....    .......|+-|.+-..-++.+..+. .--..|+||+..+.
T Consensus       301 s~Ks~~s~sL~D~~~e~~~~~~~---~q~k~~~~~~----~~~~~~~~s~d~f~~~v~p~~~~~~-a~pIDLFqlp~ts~  372 (705)
T PLN03131        301 SIKSFNSGSLADIVAEAEQAAGN---HQDKMPAFPR----MAGSGSHASLDHFKAPVAPEAAAPM-APPIDLFQLPATSP  372 (705)
T ss_pred             ceeecccccccccccCccccccc---cccccCCccc----ccccccccccccccccccccccccc-CCchhhhhccCCCC
Confidence            99999999999999999987653   3333222211    1334555565555444343333221 12467999999999


Q ss_pred             CCCCCCCCCCCCCCCc-ccCCCccccCCCCCCCCcccCCCc-----cccc----cccCCCCCCcccccccCCCCCCCCCC
Q 004602          392 VPGQVSGIPSGAGAPV-IAPATNVNVLPGGGSPVASVGHTP-----FSVF----SAAAPAAPAVSGFATFPSANAPAPAP  461 (743)
Q Consensus       392 ~P~~~~~~~~~~~~~~-~a~~~n~~~~~~~~s~~~~~g~~~-----~~~~----~~~~~~~~~~~~~~tf~~s~~s~~s~  461 (743)
                      +|.++.+.+    .|+ -+++.|.. ...-.|...+.....     -+.+    ...+.-+|+.++|++|+.....    
T Consensus       373 a~~vdlf~~----s~l~~~p~~n~~-q~~qts~p~~~dlfag~~qqq~~~s~~~~~~~~s~pknegwa~fd~~~p~----  443 (705)
T PLN03131        373 APPVDLFEI----PPLDPAPAINAY-QPPQTSLPSSIDLFGGITQQQSINSLDEKSPELSIPKNEGWATFDGIQPI----  443 (705)
T ss_pred             CCccccccc----CcccCCCccccC-CCCcccCCccccccccccccCccccccccCcccCCccccCcccccCCCcc----
Confidence            999998887    222 33444432 001111111111000     0000    1223337889999999855542    


Q ss_pred             CCCCCCccccCCCCCCccCCCCCCccCCCCCccccccCCCCcCCCCCCccccccc---c--CCCCCCCCCCCCCCCCCcc
Q 004602          462 GVTPLLPVSVNAGNSFSMQHQPPLFPTAGGQFTASQFTPPVAGSSNNQQWNTSLA---Q--NAQGPPAAQPAQSVPKPAL  536 (743)
Q Consensus       462 ~~~~~~~~~~~~~~~~~~q~~q~~fp~~~~~~~~q~~t~~~~~~~n~q~w~~~~~---q--~~~~~p~~~~~~~v~~~~~  536 (743)
                        ++.++ ++|++.        ..+|.+...+. +....  ....+.++|.-+++   |  .++..||....|+|.++.+
T Consensus       444 --~s~~~-~~n~t~--------~~v~~~~~~~~-~~d~v--~~~~~~~q~Pp~~~~~~~~s~s~~~pW~~~~~~V~~~~~  509 (705)
T PLN03131        444 --ASTPG-NENLTP--------FSIGPSMAGSA-NFDQV--PSLDKGMQWPPFQNSSDEESASGPAPWLGDLHNVEAPDN  509 (705)
T ss_pred             --cccCC-cccccc--------cccccccccCc-chhhc--cccccccccCCCcccccccccccCCcccccchhcccCCc
Confidence              22222 334432        23443333321 22222  33445589976654   4  4567889999999999988


Q ss_pred             ccCC--------------CCCCCCCCccccccCCCCCcccccccccCCCCCCCCCCccCCCCCC-CC-------------
Q 004602          537 ESAS--------------GGLSQPSPVEVKSTGRTALPEDLFTANYSSFPASVPGWQTVPPHGM-PM-------------  588 (743)
Q Consensus       537 ~~~s--------------~~~s~~~~~e~k~sgrkeLP~DlFt~~y~~~p~~vpGwq~~pp~gm-p~-------------  588 (743)
                      ++.-              .+.+....+|.+++--+.-.+|.|.....+......|.|+..|+|| ++             
T Consensus       510 ~~~q~WnAF~~~ds~~~~~l~~~~~~s~~q~~~~~~~t~~q~~~~~~~~d~~~d~~~r~~p~~~~~~~g~~~~~~~~~~p  589 (705)
T PLN03131        510 TSAQNWNAFEFDDSVAGIPLEGIKQSSEPQTAANMPPTADQLIGCKALEDFNKDGIKRTAPHGQGELPGLDEPSDILAEP  589 (705)
T ss_pred             cCccccccccccccccccccccccccccccccccCCCCcccccccccccccccccccccCCCCCcCCCCCCCCCccccCC
Confidence            6522              3455667788888888888999999999999999999999999999 22             


Q ss_pred             -------------CCCCCCCCCCCCCCCCCCCCCcccccCCCcccccccCCCCCCCCCCCCCC-CC-CCCCCCCCCCCC-
Q 004602          589 -------------PNFVHSKSTTNPFDVNNDSHPVQAQTFPSMASLQGALPNVSHPPGLLRTS-SL-TPSPAWMPPQAS-  652 (743)
Q Consensus       589 -------------~~~~~~~ks~NPFD~~~~~~~~Qa~~fpsm~~lqgalp~~~~~~~~~~ss-~~-~~s~~~~p~q~~-  652 (743)
                                   ++..++.||+|||||.+|....+.-||-.|.+||+|||+.-     +++. +| +.+..|++.-+. 
T Consensus       590 s~~~~~~~~~~~~~s~~~~~ks~npfdl~~dsd~~~~~mf~d~sslq~~lp~~~-----~~~~f~g~~~tepw~~~~~~~  664 (705)
T PLN03131        590 SYTPPAHPIMEHAQSHANDHKSINPFDLPYDSDLEPGNMFLDMSSLEAALPDAH-----LPSAFLGSGMTEPWFPQDLAM  664 (705)
T ss_pred             CCCccccccccccccccCccCCCCCcCCccccccCcccceeehHHHHhhcCCCC-----CchhhhcCCCCCccccCCCcc
Confidence                         33447999999999999999999999999999999999643     4455 56 789999999877 


Q ss_pred             CCCCCCCCCCccccccC
Q 004602          653 PYPSAMPSQMPTYAAAI  669 (743)
Q Consensus       653 ~y~~~~~~~~~~~~~~~  669 (743)
                      +|+++.|+++++|.|+.
T Consensus       665 ~yip~~pqggl~y~agq  681 (705)
T PLN03131        665 TYIPAAPQGGLAYMAGQ  681 (705)
T ss_pred             cccCCCCCCCchhhccc
Confidence            99999998888777643

>PLN03119 putative ADP-ribosylation factor GTPase-activating protein AGD14; Provisional Back     alignment and domain information
>KOG0702 consensus Predicted GTPase-activating protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG0703 consensus Predicted GTPase-activating protein [Signal transduction mechanisms] Back     alignment and domain information
>PF01412 ArfGap: Putative GTPase activating protein for Arf; InterPro: IPR001164 This entry describes a family of small GTPase activating proteins, for example ARF1-directed GTPase-activating protein, the cycle control GTPase activating protein (GAP) GCS1 which is important for the regulation of the ADP ribosylation factor ARF, a member of the Ras superfamily of GTP-binding proteins [] Back     alignment and domain information
>smart00105 ArfGap Putative GTP-ase activating proteins for the small GTPase, ARF Back     alignment and domain information
>COG5347 GTPase-activating protein that regulates ARFs (ADP-ribosylation factors), involved in ARF-mediated vesicular transport [Intracellular trafficking and secretion] Back     alignment and domain information
>PLN03114 ADP-ribosylation factor GTPase-activating protein AGD10; Provisional Back     alignment and domain information
>KOG0704 consensus ADP-ribosylation factor GTPase activator [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton] Back     alignment and domain information
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms] Back     alignment and domain information
>KOG0706 consensus Predicted GTPase-activating protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms] Back     alignment and domain information
>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms] Back     alignment and domain information
>KOG1117 consensus Rho- and Arf-GTPase activating protein ARAP3 [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>KOG0702 consensus Predicted GTPase-activating protein [Signal transduction mechanisms] Back     alignment and domain information
>PLN03131 hypothetical protein; Provisional Back     alignment and domain information
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms] Back     alignment and domain information
>PF00643 zf-B_box: B-box zinc finger; InterPro: IPR000315 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query743
2olm_A140 Arfgap Domain Of Hiv-1 Rev Binding Protein Length = 3e-18
2d9l_A134 Solution Structure Of The Arfgap Domain Of Human Ri 3e-17
2iqj_A134 Crystal Structure Of The Gap Domain Of Smap1l (Loc6 4e-11
2crr_A141 Solution Structure Of Arfgap Domain From Human Smap 7e-11
3sub_A163 Crystal Structure Of The Catalytic Domain Of Plasmo 2e-07
2owa_A138 Crystal Structure Of Putative Gtpase Activating Pro 4e-06
3dwd_A147 Crystal Structure Of The Arfgap Domain Of Human Arf 4e-06
3o47_A329 Crystal Structure Of Arfgap1-Arf1 Fusion Protein Le 4e-06
1dcq_A278 Crystal Structure Of The Arf-Gap Domain And Ankyrin 1e-05
3fm8_C392 Crystal Structure Of Full Length Centaurin Alpha-1 2e-04
3feh_A386 Crystal Structure Of Full Length Centaurin Alpha-1 2e-04
2b0o_E301 Crystal Structure Of Uplc1 Gap Domain Length = 301 4e-04
3jue_A368 Crystal Structure Of Arfgap And Ank Repeat Domain O 8e-04
4f1p_A368 Crystal Structure Of Mutant S554d For Arfgap And An 8e-04
>pdb|2OLM|A Chain A, Arfgap Domain Of Hiv-1 Rev Binding Protein Length = 140 Back     alignment and structure 
Iteration: 1

 Score = 90.5 bits (223), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 43/119 (36%), Positives = 74/119 (62%), Gaps = 2/119 (1%)
Query: 6   KEDEKNERIIRGLLKLQDNRRCINCNSLGTQYVCTNFWTFVCTNCSGIHREFT--HRVKS 63
           K++EK+ +++R +  L  NR+C +C+  G  YV     +FVCT+CSG  R     HRVKS
Sbjct: 7   KQEEKHLKMLRDMTGLPHNRKCFDCDQRGPTYVNMTVGSFVCTSCSGSLRGLNPPHRVKS 66
Query: 64  VSMAKFTSQEVKALQEGGNQRAKEVLLKEWDPQRQSFPDSSNVERLRNFIKHVYVDRRY 122
           +SM  FT QE++ LQ+ GN+  K++ L  +D +  + PD  + ++++ F++  Y  +R+
Sbjct: 67  ISMTTFTQQEIEFLQKHGNEVCKQIWLGLFDDRSSAIPDFRDPQKVKEFLQEKYEKKRW 125
>pdb|2D9L|A Chain A, Solution Structure Of The Arfgap Domain Of Human Rip Length = 134 Back     alignment and structure
>pdb|2IQJ|A Chain A, Crystal Structure Of The Gap Domain Of Smap1l (Loc64744) Stromal Membrane-Associated Protein 1-Like Length = 134 Back     alignment and structure
>pdb|2CRR|A Chain A, Solution Structure Of Arfgap Domain From Human Smap1 Length = 141 Back     alignment and structure
>pdb|3SUB|A Chain A, Crystal Structure Of The Catalytic Domain Of Plasmodium Falciparum Arf Gtpase Activating Protein Length = 163 Back     alignment and structure
>pdb|2OWA|A Chain A, Crystal Structure Of Putative Gtpase Activating Protein For Adp Ribosylation Factor From Cryptosporidium Parvum (Cgd5_1040) Length = 138 Back     alignment and structure
>pdb|3DWD|A Chain A, Crystal Structure Of The Arfgap Domain Of Human Arfgap1 Length = 147 Back     alignment and structure
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein Length = 329 Back     alignment and structure
>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin Repeats Of Papbeta Length = 278 Back     alignment and structure
>pdb|3FM8|C Chain C, Crystal Structure Of Full Length Centaurin Alpha-1 Bound With The Fha Domain Of Kif13b (Capri Target) Length = 392 Back     alignment and structure
>pdb|3FEH|A Chain A, Crystal Structure Of Full Length Centaurin Alpha-1 Length = 386 Back     alignment and structure
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain Length = 301 Back     alignment and structure
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1 Length = 368 Back     alignment and structure
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank Repeat Domain Of Acap1 Length = 368 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query743
2olm_A140 Nucleoporin-like protein RIP; arfgap, GTPase-activ 2e-47
2iqj_A134 Stromal membrane-associated protein 1-like; zinc, 5e-24
1dcq_A278 PYK2-associated protein beta; zinc-binding module, 4e-23
3lju_X386 ARF-GAP with dual PH domain-containing protein 1; 4e-23
2crr_A141 Stromal membrane-associated protein SMAP1B; arfgap 1e-22
2owa_A138 Arfgap-like finger domain containing protein; zinc 2e-22
2b0o_E301 UPLC1; arfgap, structural genomics, structural gen 1e-21
3dwd_A147 ADP-ribosylation factor GTPase-activating protein; 2e-20
3jue_A368 Arfgap with coiled-coil, ANK repeat and PH domain 3e-19
3sub_A163 ADP-ribosylation factor GTPase-activating protein; 1e-16
2p57_A144 GTPase-activating protein ZNF289; zinc finger, GAP 2e-16
2crw_A149 ARF GAP 3, ADP-ribosylation factor GTPase-activati 3e-16
3o47_A329 ADP-ribosylation factor GTPase-activating protein 5e-16
3lvq_E497 ARF-GAP with SH3 domain, ANK repeat and PH domain 3e-13
1twf_A1733 B220, DNA-directed RNA polymerase II largest subun 4e-08
1twf_A1733 B220, DNA-directed RNA polymerase II largest subun 3e-06
1m2v_B 926 SEC24, protein transport protein SEC24, SEC24P, SE 2e-06
1m2v_B 926 SEC24, protein transport protein SEC24, SEC24P, SE 2e-05
3h0g_A1752 DNA-directed RNA polymerase II subunit RPB1; trans 2e-06
3h0g_A1752 DNA-directed RNA polymerase II subunit RPB1; trans 2e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-06
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A Length = 140 Back     alignment and structure
 Score =  163 bits (415), Expect = 2e-47
 Identities = 43/123 (34%), Positives = 76/123 (61%), Gaps = 2/123 (1%)

Query: 2   ANRLKEDEKNERIIRGLLKLQDNRRCINCNSLGTQYVCTNFWTFVCTNCSGIHREF--TH 59
           + + K++EK+ +++R +  L  NR+C +C+  G  YV     +FVCT+CSG  R     H
Sbjct: 3   SAKRKQEEKHLKMLRDMTGLPHNRKCFDCDQRGPTYVNMTVGSFVCTSCSGSLRGLNPPH 62

Query: 60  RVKSVSMAKFTSQEVKALQEGGNQRAKEVLLKEWDPQRQSFPDSSNVERLRNFIKHVYVD 119
           RVKS+SM  FT QE++ LQ+ GN+  K++ L  +D +  + PD  + ++++ F++  Y  
Sbjct: 63  RVKSISMTTFTQQEIEFLQKHGNEVCKQIWLGLFDDRSSAIPDFRDPQKVKEFLQEKYEK 122

Query: 120 RRY 122
           +R+
Sbjct: 123 KRW 125
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens} Length = 134 Back     alignment and structure
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278 Back     alignment and structure
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C* Length = 386 Back     alignment and structure
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141 Back     alignment and structure
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II} Length = 138 Back     alignment and structure
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301 Back     alignment and structure
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens} Length = 147 Back     alignment and structure
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368 Back     alignment and structure
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7} Length = 163 Back     alignment and structure
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens} Length = 144 Back     alignment and structure
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 149 Back     alignment and structure
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Length = 329 Back     alignment and structure
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497 Back     alignment and structure
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733 Back     alignment and structure
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752 Back     alignment and structure
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 743
d1dcqa2122 g.45.1.1 (A:247-368) Pyk2-associated protein beta 1e-32
>d1dcqa2 g.45.1.1 (A:247-368) Pyk2-associated protein beta ARF-GAP domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 122 Back     information, alignment and structure

class: Small proteins
fold: ArfGap/RecO-like zinc finger
superfamily: ArfGap/RecO-like zinc finger
family: Pyk2-associated protein beta ARF-GAP domain
domain: Pyk2-associated protein beta ARF-GAP domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  119 bits (300), Expect = 1e-32
 Identities = 28/120 (23%), Positives = 58/120 (48%), Gaps = 4/120 (3%)

Query: 12  ERIIRGLLKLQDNRRCINCNSLGTQYVCTNFWTFVCTNCSGIHREFT---HRVKSVSMAK 68
           + II  + ++  N  C +C +    ++ TN     C  CSGIHRE      R++S+++  
Sbjct: 3   KEIISEVQRMTGNDVCCDCGAPDPTWLSTNLGILTCIECSGIHRELGVHYSRMQSLTLDV 62

Query: 69  FTSQEVKALQEGGNQRAKEVLLKEWDPQRQSFPDS-SNVERLRNFIKHVYVDRRYTGERN 127
             + E+   +  GN    E++      +    P+  S++   +++I   Y++RRY  +++
Sbjct: 63  LGTSELLLAKNIGNAGFNEIMECCLPSEDPVKPNPGSDMIARKDYITAKYMERRYARKKH 122

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query743
d1dcqa2122 Pyk2-associated protein beta ARF-GAP domain {Mouse 100.0
d1u5ka2157 Recombinational repair protein RecO, C-terminal do 86.57
>d1dcqa2 g.45.1.1 (A:247-368) Pyk2-associated protein beta ARF-GAP domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: Small proteins
fold: ArfGap/RecO-like zinc finger
superfamily: ArfGap/RecO-like zinc finger
family: Pyk2-associated protein beta ARF-GAP domain
domain: Pyk2-associated protein beta ARF-GAP domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=5.3e-39  Score=254.59  Aligned_cols=116  Identities=24%  Similarity=0.512  Sum_probs=104.1

Q ss_pred             HHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCEEHHHHHHHHHHHCCC---CCEEECCCCCCCHHHHHHHHHCCHHHHHH
Q ss_conf             999999987177998776889999990471410120054455441299---74000014777889999888218199999
Q 004602           11 NERIIRGLLKLQDNRRCINCNSLGTQYVCTNFWTFVCTNCSGIHREFT---HRVKSVSMAKFTSQEVKALQEGGNQRAKE   87 (743)
Q Consensus        11 ~ekiLr~Llk~pgNk~CaDCGs~~PtWaSinlGVFICi~CSGIHR~Lg---HrVKSIsLD~Wt~eEI~~L~~gGN~raN~   87 (743)
                      ++++|+.|++.|+|++|||||+.+|+|||+|||||||++|||+||+||   |+|||++||+|+.++|++|+.+||.++|+
T Consensus         2 t~~~l~~l~~~p~N~~CaDC~~~~p~w~s~n~GvfvC~~CsgiHR~lg~~is~VkS~~ld~w~~~~i~~~~~~GN~~~n~   81 (122)
T d1dcqa2           2 TKEIISEVQRMTGNDVCCDCGAPDPTWLSTNLGILTCIECSGIHRELGVHYSRMQSLTLDVLGTSELLLAKNIGNAGFNE   81 (122)
T ss_dssp             HHHHHHHHHHSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCGGGGHHHHHSCHHHHHH
T ss_pred             HHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCEEECHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             59999999828997945899878999699427988705455787567988427642555879999999999996899999


Q ss_pred             HHHHCCCCCCCCCCC-CCHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf             995117999999999-983999999999997612223688
Q 004602           88 VLLKEWDPQRQSFPD-SSNVERLRNFIKHVYVDRRYTGER  126 (743)
Q Consensus        88 iwEa~~~p~~~p~Pd-ssd~~~lreFIR~KYveKrF~~e~  126 (743)
                      +||++++......|. .++...+++||++||++|+|+.++
T Consensus        82 ~~ea~~~~~~~~kp~~~~~~~~r~~fI~~KY~~k~f~~k~  121 (122)
T d1dcqa2          82 IMECCLPSEDPVKPNPGSDMIARKDYITAKYMERRYARKK  121 (122)
T ss_dssp             HHTTTCCSSSCCSCCTTCCHHHHHHHHHHHHTTCTTSCCC
T ss_pred             HHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCC
T ss_conf             9996488023758899866999999999999808651556
>d1u5ka2 g.45.1.2 (A:81-237) Recombinational repair protein RecO, C-terminal domain {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure