Citrus Sinensis ID: 004625

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-

MGAKNKARNLDHEICDDEMEEQDETSRPVSKSKKVAKEHKEQLQRLQEKDPEFFKFLQEHDKELLEFDDDDIDDDVETDMEDAEMQEDEDVGPDMEDEEEKPSKNVITTEMVDSWCNSIRENGQLGAVRSLMKAFRIACHYGDDAGEESSVKFHIMSSSVFNKIMLFVLSEMDGILRKLLKLPSSGGKKETITDLMHTKQWKKYNHLVKSYLGNSLHVLNQMTDTEMISFTLRRLKFSSLFLAAFPSLLRKYVKAALHFWGTGGGALPVVAFLFLRDLCIRLGSDCLDDCFKGIYKAYILNCHFINAVKLQHIQFLSNCVVELLGVDLPSAYQHAFVFIRQLAMILRDAFNVKTKEAFRKVYEWKFINCLELWTGAVCAYCSEADMKPLAYPLTQIISGVARLVPTARYFPLRLRCVRMLNRIAASTGTFIPVSMLLLDMLEMKELNRPPSGGVGKAVDLRTVLKVSKPTLKTRAFQEACVYSVVEELAEHLAQWSYSVAFFELSFIPSVRLRDFCKSTKVERFRKEMRQLIRQVDANSEFTNERRMSITFQPNNPSASFFLEDEKKAGSSPLSRYVAILRQRARQRNDSLMESSVLVGEKASVFGSKKLPASDEEDDSADEQGATVFSSSSWLPGSASKDKPPKEEKKKKKRRMTQQEVVALEEDIVEDLVLSSDEEDGSMSDAPADEDGSASDVFSSDKDDDLKPVSPREQTKKRKLKNLPKKNVKSHAKQSKKRKRAN

cccccccccccccccccHHHHcccccccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccccccccEEEccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccHHHcccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHccccccccccccccccccHHHccccHHHHccHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccHHHHHHHHcccc

ccccHHccccccccccccccccccccccccHccccHHHHHHHHHHHHHccHHHHHHHHHccHHHHccccccccccccccccccccccHccccccccHHHccccccEHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccccccccEEEEccHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEcccccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHcHHHHHHHHHHHHHHHHHcccccHccHHHHHHHHHHHHHHHcccEEcHHHHHHHHHcHHHccccccccccccccEEEEEEccHHHHccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHcccHHccccccccccccccccccccccccccccccccHHHHcccccHHHHHcccccccccEHHEEccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccHHHHHHHHHHccc

mgaknkarnldheicddemeeqdetsrpvskskKVAKEHKEQLQRLQEKDPEFFKFLQEHDKEllefddddidddvetdmedaemqededvgpdmedeeekpsknviTTEMVDSWCNSIRENGQLGAVRSLMKAFRIAChygddageessVKFHIMSSSVFNKIMLFVLSEMDGILRKLlklpssggkketITDLMHTKQWKKYNHLVKSYLGNSLHVLNQMTDTEMISFTLRRLKFSSLFLAAFPSLLRKYVKAALHFwgtgggalPVVAFLFLRDLCIRLGSDCLDDCFKGIYKAYILNCHFINAVKLQHIQFLSNCVVELLGVDLPSAYQHAFVFIRQLAMILRDAFNVKTKEAFRKVYEWKFINCLELWTGAVCAycseadmkplayplTQIISGVArlvptaryfplRLRCVRMLNRIAASTGTFIPVSMLLLDMLEmkelnrppsggvgkavDLRTVLKvskptlktraFQEACVYSVVEELAEHLAQWSYSVAFFElsfipsvrlrdfcKSTKVERFRKEMRQLIRQVDanseftnerrmsitfqpnnpsasffledekkagsspLSRYVAILRQRARQRNDSLMESSVLVGEkasvfgskklpasdeeddsadeqgatvfsssswlpgsaskdkppkeekkkkKRRMTQQEVVALEEDIVEDLvlssdeedgsmsdapadedgsasdvfssdkdddlkpvspreqtkkrklknlpkknvkshakqskkrkran

mgaknkarnldheicddemeeqdetsrpvskskkvAKEHKEQlqrlqekdpEFFKFLQEHDKellefddddiDDDVETDMEDAEMqededvgpdmedeeekpsknvITTEMVDSWCNSIRENGQLGAVRSLMKAFRIACHYGDDAGEESSVKFHIMSSSVFNKIMLFVLSEMDGILRKLLklpssggkketitdlmhtkQWKKYNHLVKSYLGNSLHVLNQMTDTEMISFTLRRLKFSSLFLAAFPSLLRKYVKAALHFWGTGGGALPVVAFLFLRDLCIRLGSDCLDDCFKGIYKAYILNCHFINAVKLQHIQFLSNCVVELLGVDLPSAYQHAFVFIRQLAMILRDAFNVKTKEAFRKVYEWKFINCLELWTGAVCAYCSEADMKPLAYPLTQIISGVARLVPTARYFPLRLRCVRMLNRIAASTGTFIPVSMLLLDMLEMKELNRppsggvgkavdlRTVLKvskptlktrafQEACVYSVVEELAEHLAQWSYSVAFFELSFIPSVRLRDFCKSTKVERFRKEMRQLIrqvdanseftnerrmsitfqpnnpSASFFLEDEKKAGSSPLSRYVAILRQRARqrndslmessvlvgekasvfgsKKLPASDEEDDSADEQGAtvfsssswlpgsaskdkppkeekkkkkrrmtqqevvaleediveDLVLSSDEedgsmsdapadedgsasdvfssdkdddlkpvspreqtkkrklknlpkknvkshakqskkrkran

MGAKNKARNLDHEICDDEMEEQDETSRPVSKSKKVAKEHKEQLQRLQEKDPEFFKFLQehdkellefddddidddvetdmedaemqededVGPDMEDEEEKPSKNVITTEMVDSWCNSIRENGQLGAVRSLMKAFRIACHYGDDAGEESSVKFHIMSSSVFNKIMLFVLSEMDGIlrkllklpssggkkETITDLMHTKQWKKYNHLVKSYLGNSLHVLNQMTDTEMISFTLRRlkfsslflaafpsllRKYVKAALHFWGTGGGALPVVAFLFLRDLCIRLGSDCLDDCFKGIYKAYILNCHFINAVKLQHIQFLSNCVVELLGVDLPSAYQHAFVFIRQLAMILRDAFNVKTKEAFRKVYEWKFINCLELWTGAVCAYCSEADMKPLAYPLTQIISGVARLVPTARYFPLRLRCVRMLNRIAASTGTFIPVSmllldmlemkelNRPPSGGVGKAVDLRTVLKVSKPTLKTRAFQEACVYSVVEELAEHLAQWSYSVAFFELSFIPSVRLRDFCKSTKVERFRKEMRQLIRQVDANSEFTNERRMSITFQPNNPSASFFLEDEKKAGSSPLSRYVAILRQRARQRNDSLMESSVLVGEKASVFGSKKLPasdeeddsadeQGATVFSSSSWLPGSASkdkppkeekkkkkRRMTQQEVVALEEDIVEDLVLSSDEEDGSMSDAPADEDGSASDVFSSDKDDDLKPVSPREQTkkrklknlpkknvkSHAKQSKKRKRAN

*********************************************************************************************************VITTEMVDSWCNSIRENGQLGAVRSLMKAFRIACHYGDDAGEESSVKFHIMSSSVFNKIMLFVLSEMDGILRKLLKLPSSGGKKETITDLMHTKQWKKYNHLVKSYLGNSLHVLNQMTDTEMISFTLRRLKFSSLFLAAFPSLLRKYVKAALHFWGTGGGALPVVAFLFLRDLCIRLGSDCLDDCFKGIYKAYILNCHFINAVKLQHIQFLSNCVVELLGVDLPSAYQHAFVFIRQLAMILRDAFNVKTKEAFRKVYEWKFINCLELWTGAVCAYCSEADMKPLAYPLTQIISGVARLVPTARYFPLRLRCVRMLNRIAASTGTFIPVSMLLLDMLEMKEL******GVGKAVDLRTVLKVSKPTLKTRAFQEACVYSVVEELAEHLAQWSYSVAFFELSFIPSVRLRDFCKSTKVERFRKEMRQLI*****************************************************************************************************************************************************************************************************************

*****************************************************FKFLQEHDKE**********************************************EMVDSWCN**R**G*LGAVRSLMKAFRIAC***************IMSSSVFNKIMLFVLSEMDGILRKLLK********************KKYNHLVKSYLGNSLHVLNQMTDTEMISFTLRRLKFSSLFLAAFPSLLRKYVKAALHFWGTGGGALPVVAFLFLRDLCIRLGSDCLDDCFKGIYKAYILNCHFINAVKLQHIQFLSNCVVELLGVDLPSAYQHAFVFIRQLAMILRDAFNVKTKEAFRKVYEWKFINCLELWTGAVCAYCSEADMKPLAYPLTQIISGVARLVPTARYFPLRLRCVRMLNRIAASTGTFIPVSMLLLDM*********************TVLKVSKPTLKTRAFQEACVYSVVEELAEHLAQWSYSVAFFELSFIPSVRLRDFCKSTKVERFRKEMRQLIRQVDANSEFTN**********NNP**SFFLEDEKKAGSSPLSRYVAILR***************************************************************************************EDLV*********************************************************************

*********LDHEICDD***************************RLQEKDPEFFKFLQEHDKELLEFDDDDIDDDVETDM***********************KNVITTEMVDSWCNSIRENGQLGAVRSLMKAFRIACHYGDDAGEESSVKFHIMSSSVFNKIMLFVLSEMDGILRKLLKLPSSGGKKETITDLMHTKQWKKYNHLVKSYLGNSLHVLNQMTDTEMISFTLRRLKFSSLFLAAFPSLLRKYVKAALHFWGTGGGALPVVAFLFLRDLCIRLGSDCLDDCFKGIYKAYILNCHFINAVKLQHIQFLSNCVVELLGVDLPSAYQHAFVFIRQLAMILRDAFNVKTKEAFRKVYEWKFINCLELWTGAVCAYCSEADMKPLAYPLTQIISGVARLVPTARYFPLRLRCVRMLNRIAASTGTFIPVSMLLLDMLEMKELNRPPSGGVGKAVDLRTVLKVSKPTLKTRAFQEACVYSVVEELAEHLAQWSYSVAFFELSFIPSVRLRDFCKSTKVERFRKEMRQLIRQVDANSEFTNERRMSITFQPNNPSASFFLEDEKKAGSSPLSRYVAILRQRARQRNDSLMESSVLVGEKASVFGSKK************************************************QEVVALEEDIVEDLVLSS*****************************************RKLKNL*******************

*************************************EHKEQLQRLQEKDPEFFKFLQEHDKELLEFD***********************************KNVITTEMVDSWCNSIRENGQLGAVRSLMKAFRIACHYGDDAGEESSVKFHIMSSSVFNKIMLFVLSEMDGILRKLLKLPSSGGKKETITDLMHTKQWKKYNHLVKSYLGNSLHVLNQMTDTEMISFTLRRLKFSSLFLAAFPSLLRKYVKAALHFWGTGGGALPVVAFLFLRDLCIRLGSDCLDDCFKGIYKAYILNCHFINAVKLQHIQFLSNCVVELLGVDLPSAYQHAFVFIRQLAMILRDAFNVKTKEAFRKVYEWKFINCLELWTGAVCAYCSEADMKPLAYPLTQIISGVARLVPTARYFPLRLRCVRMLNRIAASTGTFIPVSMLLLDMLEMKELNRPPSGGVGKAVDLRTVLKVSKPTLKTRAFQEACVYSVVEELAEHLAQWSYSVAFFELSFIPSVRLRDFCKSTKVERFRKEMRQLIRQVDANSEFTNERRMSITFQPNNPSASFFLEDEKKAGSSPLSRYVAILRQRARQRNDSLMESS********************************************************************EEDIVE*L*L********************************************************************

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MGAKNKARNLDHEICDDEMEEQDETSRPxxxxxxxxxxxxxxxxxxxxxDPEFFKFLQEHDKELLEFDDDDIDDDVETDMEDAEMQEDEDVGPDMEDEEEKPSKNVITTEMVDSWCNSIRENGQLGAVRSLMKAFRIACHYGDDAGEESSVKFHIMSSSVFNKIMLFVLSEMDGILRKLLKLPSSGGKKETITDLMHTKQWKKYNHLVKSYLGNSLHVLNQMTDTEMISFTLRRLKFSSLFLAAFPSLLRKYVKAALHFWGTGGGALPVVAFLFLRDLCIRLGSDCLDDCFKGIYKAYILNCHFINAVKLQHIQFLSNCVVELLGVDLPSAYQHAFVFIRQLAMILRDAFNVKTKEAFRKVYEWKFINCLELWTGAVCAYCSEADMKPLAYPLTQIISGVARLVPTARYFPLRLRCVRMLNRIAASTGTFIPVSMLLLDMLEMKELNRPPSGGVGKAVDLRTVLKVSKPTLKTRAFQEACVYSVVEELAEHLAQWSYSVAFFELSFIPSVRLRDFCKSTKVERFRKEMRQLIRQVDANSEFTNERRMSITFQPNNPSASFFLEDEKKAGSSPLSRYVAILRQRARQRNDSLMESSVLVGEKASVFGSKKLPASDEEDDSADEQGATVFSSSSWLPGSASKDKPPKxxxxxxxxxxxxxxxxxxxxxIVEDLVLSSDEEDGSMSDAPADEDGSASDVFSSDKDDDLKPVSPREQTKKRKLKNLPKKNVKSHAKQSKKRKRAN

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		741	2.2.26 [Sep-21-2011]
Q9ZPV5		764	Nucleolar complex protein	yes	no	0.871	0.845	0.664	0.0
Q8LNU5		757	Nucleolar complex protein	yes	no	0.855	0.837	0.538	0.0
Q3SYU1		746	Nucleolar complex protein	yes	no	0.735	0.730	0.322	4e-86
Q9WV70		747	Nucleolar complex protein	yes	no	0.731	0.725	0.317	1e-81
Q9Y3T9		749	Nucleolar complex protein	yes	no	0.743	0.735	0.306	4e-78
P39744		710	Nucleolar complex protein	yes	no	0.766	0.8	0.285	4e-67
Q9VIF0		766	Nucleolar complex protein	yes	no	0.720	0.697	0.294	2e-66
Q9P7G0		707	Uncharacterized NOC2 fami	yes	no	0.769	0.806	0.269	2e-60
A8WTM7		719	Nucleolar complex protein	N/A	no	0.448	0.461	0.284	3e-30
O17580		715	Nucleolar complex protein	yes	no	0.448	0.464	0.278	5e-29

>sp\|Q9ZPV5\|NOC2L_ARATH Nucleolar complex protein 2 homolog OS=Arabidopsis thaliana GN=At2g18220 PE=2 SV=2	Back alignment and function desciption

 Score =  908 bits (2346), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 440/662 (66%), Positives = 533/662 (80%), Gaps = 16/662 (2%)

Query: 43  LQRLQEKDPEFFKFLQEHDKELLEFDDDDIDDDVE----TDMEDAEMQEDEDVGPDMEDE 98
           L+RLQEKDP+FF++++EHD ELL+FD  +I+DD +    TD+ED E +E +D    ME  
Sbjct: 63  LKRLQEKDPDFFQYMKEHDAELLKFDATEIEDDADVEPDTDLEDTE-KEGDDEATKMEIA 121

Query: 99  EEKPSKNVITTEMVDSWCNSIRENGQLGAVRSLMKAFRIACHYGDDAGEESSVKFHIMSS 158
           ++   +  IT  MVD+W  SI +  +LG VRS+++A+R ACHYGDD G++ S KF +MSS
Sbjct: 122 KKVHVQKTITASMVDAWSKSIEDEAKLGGVRSILRAYRTACHYGDDTGDDQSTKFSVMSS 181

Query: 159 SVFNKIMLFVLSEMDGILRKLLKLPS-SGGKKETITDLMHTKQWKKYNHLVKSYLGNSLH 217
            VFNKIM++VLSEMDGILRKLL+ P  + G KETI +L +T+ WK YNHLVKSYLGNSLH
Sbjct: 182 EVFNKIMIYVLSEMDGILRKLLRFPEDTRGTKETILELTNTRPWKNYNHLVKSYLGNSLH 241

Query: 218 VLNQMTDTEMISFTLRRLKFSSLFLAAFPSLLRKYVKAALHFWGTGGGALPVVAFLFLRD 277
           VLNQMTDTEMI+FTLRRLK SS+FLAAFPSLLRKY+K ALHFWGTG GALPVV+ LFLRD
Sbjct: 242 VLNQMTDTEMITFTLRRLKHSSVFLAAFPSLLRKYIKVALHFWGTGSGALPVVSLLFLRD 301

Query: 278 LCIRLGSDCLDDCFKGIYKAYILNCHFINAVKLQHIQFLSNCVVELLGVDLPSAYQHAFV 337
           LCIRLGSDC+DDCFKG+YKAY+LNC F+NA KL+HI FL NC +ELLG D+ +AYQHAFV
Sbjct: 302 LCIRLGSDCVDDCFKGMYKAYVLNCQFVNADKLKHISFLGNCFIELLGTDISAAYQHAFV 361

Query: 338 FIRQLAMILRDAFNVKTKEAFRKVYEWKFINCLELWTGAVCAYCSEADMKPLAYPLTQII 397
           FIRQLAMILR+A N KTKEAFRKVY+WKFI+CLELWTGAVCAY S+++++P+AYPL QII
Sbjct: 362 FIRQLAMILREALNTKTKEAFRKVYQWKFIHCLELWTGAVCAYSSQSELRPVAYPLAQII 421

Query: 398 SGVARLVPTARYFPLRLRCVRMLNRIAASTGTFIPVSMLLLDMLEMKELNRPPSGGVGKA 457
           +GVARLVPTARY PLRLRCVRMLNR+AA+TGTFIPVSMLL+DMLEMKELNRPP+GGVGK 
Sbjct: 422 TGVARLVPTARYTPLRLRCVRMLNRLAAATGTFIPVSMLLVDMLEMKELNRPPTGGVGKG 481

Query: 458 VDLRTVLKVSKPTLKTRAFQEACVYSVVEELAEHLAQWSYSVAFFELSFIPSVRLRDFCK 517
           VDLRT+LKVSKP +KTRAFQEACVY+VVEEL EHL+QWS SVAFFELSFIP++RLR FCK
Sbjct: 482 VDLRTLLKVSKPAVKTRAFQEACVYTVVEELVEHLSQWSCSVAFFELSFIPTIRLRSFCK 541

Query: 518 STKVERFRKEMRQLIRQVDANSEFTNERRMSITFQPNNPSASFFLEDEKKAGSSPLSRYV 577
           STK ERFRKEM+QLI Q++ANSEF N++R  I F PN+ +A  FLEDEKKAG +PL +Y 
Sbjct: 542 STKAERFRKEMKQLISQIEANSEFVNKKRALIKFLPNDLAAESFLEDEKKAGKTPLLQYA 601

Query: 578 AILRQRARQRNDSLMESSVLVGEKASVFGSKKLPASDEEDDSADEQGATVFSSSSWLPGS 637
            I+RQRA+QRN+SL+ES V+VGE ++VFG     + DE+D+   E+GA  F +SSWLPGS
Sbjct: 602 EIIRQRAQQRNESLVESDVIVGENSAVFGKNAPSSDDEDDEDRMEKGAAAF-NSSWLPGS 660

Query: 638 ---------ASKDKPPKEEKKKKKRRMTQQEVVALEEDIVEDLVLSSDEEDGSMSDAPAD 688
                        K  ++   K K    Q E    E+D+VED VLSSDEE+  + D   D
Sbjct: 661 DSKEKEPEEEKTKKKKRKRGGKSKTEKKQDEQGLGEDDVVEDFVLSSDEEEEDLFDIGGD 720

Query: 689 ED 690
           +D
Sbjct: 721 KD 722

Arabidopsis thaliana (taxid: 3702)

>sp\|Q8LNU5\|NOC2L_ORYSJ Nucleolar complex protein 2 homolog OS=Oryza sativa subsp. japonica GN=Os10g0495500 PE=2 SV=1	Back alignment and function description

>sp\|Q3SYU1\|NOC2L_BOVIN Nucleolar complex protein 2 homolog OS=Bos taurus GN=NOC2L PE=2 SV=1	Back alignment and function description

>sp\|Q9WV70\|NOC2L_MOUSE Nucleolar complex protein 2 homolog OS=Mus musculus GN=Noc2l PE=1 SV=2	Back alignment and function description

>sp\|Q9Y3T9\|NOC2L_HUMAN Nucleolar complex protein 2 homolog OS=Homo sapiens GN=NOC2L PE=1 SV=4	Back alignment and function description

>sp\|P39744\|NOC2_YEAST Nucleolar complex protein 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NOC2 PE=1 SV=2	Back alignment and function description

>sp\|Q9VIF0\|NOC2L_DROME Nucleolar complex protein 2 homolog OS=Drosophila melanogaster GN=CG9246 PE=1 SV=1	Back alignment and function description

>sp\|Q9P7G0\|YKY4_SCHPO Uncharacterized NOC2 family protein C1142.04 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC1142.04 PE=1 SV=1	Back alignment and function description

>sp\|A8WTM7\|NOC2L_CAEBR Nucleolar complex protein 2 homolog OS=Caenorhabditis briggsae GN=pro-2 PE=3 SV=1	Back alignment and function description

>sp\|O17580\|NOC2L_CAEEL Nucleolar complex protein 2 homolog OS=Caenorhabditis elegans GN=pro-2 PE=2 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		741
359479162		744	PREDICTED: nucleolar complex protein 2 h	0.939	0.935	0.704	0.0
296083931		776	unnamed protein product [Vitis vinifera]	0.939	0.896	0.704	0.0
147854174		883	hypothetical protein VITISV_040115 [Viti	0.939	0.788	0.704	0.0
255552712		1077	Peroxidase 31 precursor, putative [Ricin	0.939	0.646	0.703	0.0
449441688		734	PREDICTED: nucleolar complex protein 2 h	0.968	0.978	0.685	0.0
224053008		680	predicted protein [Populus trichocarpa]	0.862	0.939	0.747	0.0
356557443		817	PREDICTED: nucleolar complex protein 2 h	0.885	0.802	0.723	0.0
449523301		688	PREDICTED: LOW QUALITY PROTEIN: nucleola	0.909	0.979	0.698	0.0
357444745		731	Nucleolar complex protein-like protein [	0.921	0.934	0.685	0.0
297832474		772	hypothetical protein ARALYDRAFT_480727 [	0.871	0.836	0.683	0.0

>gi\|359479162\|ref\|XP_002268336.2\| PREDICTED: nucleolar complex protein 2 homolog [Vitis vinifera]	Back alignment and taxonomy information

 Score = 1031 bits (2667), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 514/730 (70%), Positives = 612/730 (83%), Gaps = 34/730 (4%)

Query: 29  VSKSKKVAKEHKEQLQRLQEKDPEFFKFLQEHDKELLEFDDDDIDDDVETDME------- 81
            SKS+  A+EH ++L+RLQEKDPEF++FL+EHDKELL F+D+ ID+D E DME       
Sbjct: 6   TSKSQSKAREHMKELERLQEKDPEFYQFLKEHDKELLAFNDEGIDEDDEIDMEDDDIDME 65

Query: 82  DAEMQEDEDV-GPDME------DEEEKPSKNVITTEMVDSWCNSIRENGQLGAVRSLMKA 134
           +AE+ ED++    D+E      + E+K SKNVITTEMVDSWCNSIREN +LGA+RSLM+A
Sbjct: 66  NAEIPEDDEADASDLEKVANKAENEDKSSKNVITTEMVDSWCNSIRENAKLGAIRSLMRA 125

Query: 135 FRIACHYGDDAGEESSVKFHIMSSSVFNKIMLFVLSEMDGILRKLLKLPSSGGKKETITD 194
           FR ACHYGDD  +ESS KF+IMSS VFNKIMLFVLSEMDGILR LLKLP+SGGKKETI +
Sbjct: 126 FRTACHYGDDEQDESSTKFNIMSSGVFNKIMLFVLSEMDGILRSLLKLPTSGGKKETINN 185

Query: 195 LMHTKQWKKYNHLVKSYLGNSLHVLNQMTDTEMISFTLRRLKFSSLFLAAFPSLLRKYVK 254
           LM TKQWK +NHLVKSYLGN+LH+LNQMTD EMISFTLRRL++SS+FL  FPSLLR+Y+K
Sbjct: 186 LMGTKQWKDHNHLVKSYLGNALHILNQMTDMEMISFTLRRLRYSSIFLTTFPSLLRRYIK 245

Query: 255 AALHFWGTGGGALPVVAFLFLRDLCIRLGSDCLDDCFKGIYKAYILNCHFINAVKLQHIQ 314
             LHFWGTGGGALPVV+FLF+RDLCIRLGSDCLD+CFKGIY+AY+LNC F+NAVKLQHIQ
Sbjct: 246 VTLHFWGTGGGALPVVSFLFIRDLCIRLGSDCLDECFKGIYRAYVLNCQFVNAVKLQHIQ 305

Query: 315 FLSNCVVELLGVDLPSAYQHAFVFIRQLAMILRDAFNVKTKEAFRKVYEWKFINCLELWT 374
           FL NCV+ELLGVDLP AYQHAFVFIRQL MILR+A N++TKEAFRKVYEWKFINCLELWT
Sbjct: 306 FLGNCVIELLGVDLPIAYQHAFVFIRQLGMILREALNMRTKEAFRKVYEWKFINCLELWT 365

Query: 375 GAVCAYCSEADMKPLAYPLTQIISGVARLVPTARYFPLRLRCVRMLNRIAASTGTFIPVS 434
           GAVCAY SEAD +PLAYPLTQIISGVARLVPTARYFPLRLRC RMLNRIA+STGTFIPVS
Sbjct: 366 GAVCAYGSEADFRPLAYPLTQIISGVARLVPTARYFPLRLRCARMLNRIASSTGTFIPVS 425

Query: 435 MLLLDMLEMKELNRPPSGGVGKAVDLRTVLKVSKPTLKTRAFQEACVYSVVEELAEHLAQ 494
           +LLLDMLEMKELN+PP+GG GKAV+L++VLKVSKPTLKTRAFQEACV+SVVEELAEHLAQ
Sbjct: 426 LLLLDMLEMKELNKPPTGGAGKAVNLQSVLKVSKPTLKTRAFQEACVFSVVEELAEHLAQ 485

Query: 495 WSYSVAFFELSFIPSVRLRDFCKSTKVERFRKEMRQLIRQVDANSEFTNERRMSITFQPN 554
           WSYSVAF ELSFIP+VRLR FCK+TK+ERFR+EMRQLI  + ANSEFTNERRM I+F PN
Sbjct: 486 WSYSVAFLELSFIPAVRLRSFCKATKIERFRREMRQLIHNIQANSEFTNERRMCISFLPN 545

Query: 555 NPSASFFLEDEKKAGSSPLSRYVAILRQRARQRNDSLMESSVLVGEKASVFGSKKLPASD 614
           +P+A+ FLE EKK+G+SPLS+YVA L QRA+QRN+SLM SSVLVG ++S+FG+K   +  
Sbjct: 546 DPAATTFLEAEKKSGASPLSQYVATLHQRAQQRNESLMGSSVLVGSRSSIFGNKM--SEH 603

Query: 615 EEDDSADEQGATVFSSSSWLPGSASKDKPPKEEKKKKKRRMTQQEVVALEEDIVEDLVLS 674
           +EDD+ +E GA VF +SSW PGS SK K  KE KKKKK++M +++  A+ +D+VEDL+LS
Sbjct: 604 DEDDTMNEDGAAVF-NSSWFPGSDSKAKLSKEGKKKKKKKMQEKQEEAITDDVVEDLILS 662

Query: 675 SDEEDGSMSDAPADEDGSASDVFSSDKDDDLKPVSPREQTKKRKLKNLPKKNVKSHA--- 731
           SD EDGS++D  +          + ++D++ K V  ++Q KK+   ++P    K  A   
Sbjct: 663 SD-EDGSLNDTSS----------AGEEDEEAKSVPSKQQRKKQSTIDMPSSGNKDKAKPT 711

Query: 732 ---KQSKKRK 738
              K+SKKRK
Sbjct: 712 LPMKKSKKRK 721

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|296083931\|emb\|CBI24319.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|147854174\|emb\|CAN81729.1\| hypothetical protein VITISV_040115 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|255552712\|ref\|XP_002517399.1\| Peroxidase 31 precursor, putative [Ricinus communis] gi\|223543410\|gb\|EEF44941.1\| Peroxidase 31 precursor, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|449441688\|ref\|XP_004138614.1\| PREDICTED: nucleolar complex protein 2 homolog [Cucumis sativus]	Back alignment and taxonomy information

>gi\|224053008\|ref\|XP_002297661.1\| predicted protein [Populus trichocarpa] gi\|222844919\|gb\|EEE82466.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|356557443\|ref\|XP_003547025.1\| PREDICTED: nucleolar complex protein 2 homolog [Glycine max]	Back alignment and taxonomy information

>gi\|449523301\|ref\|XP_004168662.1\| PREDICTED: LOW QUALITY PROTEIN: nucleolar complex protein 2 homolog, partial [Cucumis sativus]	Back alignment and taxonomy information

>gi\|357444745\|ref\|XP_003592650.1\| Nucleolar complex protein-like protein [Medicago truncatula] gi\|355481698\|gb\|AES62901.1\| Nucleolar complex protein-like protein [Medicago truncatula]	Back alignment and taxonomy information

>gi\|297832474\|ref\|XP_002884119.1\| hypothetical protein ARALYDRAFT_480727 [Arabidopsis lyrata subsp. lyrata] gi\|297329959\|gb\|EFH60378.1\| hypothetical protein ARALYDRAFT_480727 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		741
DICTYBASE\|DDB_G0284383		802	DDB_G0284383 "Nucleolar comple	0.564	0.521	0.293	7e-78
UNIPROTKB\|Q3SYU1		746	NOC2L "Nucleolar complex prote	0.753	0.747	0.297	3.7e-72
TAIR\|locus:2100006		594	RBL "REBELOTE" [Arabidopsis th	0.646	0.806	0.310	4.3e-70
UNIPROTKB\|F1NV71		764	NOC2L "Uncharacterized protein	0.734	0.712	0.287	1.8e-68
UNIPROTKB\|Q9Y3T9		749	NOC2L "Nucleolar complex prote	0.758	0.750	0.283	1.6e-65
ASPGD\|ASPL0000053778		774	AN0946 [Emericella nidulans (t	0.670	0.642	0.258	5.8e-62
MGI\|MGI:1931051		747	Noc2l "nucleolar complex assoc	0.736	0.730	0.285	1.3e-61
FB\|FBgn0032925		766	CG9246 [Drosophila melanogaste	0.646	0.625	0.274	1.6e-61
UNIPROTKB\|G4MV71		799	MGG_08867 "Nucleolar complex p	0.773	0.717	0.269	1.6e-58
UNIPROTKB\|E9PTF3		644	Noc2l "Protein Noc2l" [Rattus	0.641	0.737	0.292	1.9e-58

DICTYBASE\|DDB_G0284383 DDB_G0284383 "Nucleolar complex protein 2 homolog" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

 Score = 601 (216.6 bits), Expect = 7.0e-78, Sum P(4) = 7.0e-78
 Identities = 126/429 (29%), Positives = 215/429 (50%)

Query:    11 DHEICDD-EMEEQDETSRPVSKSKKVAKEHKEQLQRLQEKDPEFFKFLQXXXXXXXXXXX 69
             D E+ +  + +E  + S      K+   +HK+ L  L++KDP+ F+FL            
Sbjct:   102 DKELANKKDKKEVGKDSEKTKSLKEQITQHKKDLDELKKKDPKLFEFLGENDKELLSFNT 161

Query:    70 XXXXXXXXXXXXXXXXXXXXXVGPDMEDEEEKPSKNVITTEMVDSWCNSIRENGQLGAVR 129
                                   G   E E+EK  K V+T+ ++DSW +   +N  +  V+
Sbjct:   162 EMDDDDDEESDDDDDAEDAEGEG---EGEKEKNQKEVLTSALLDSWISEANKNTTVQNVK 218

Query:   130 SLMKAFRIACHYGDDAGEESSVKFHIMSSSVFNKIMLFVLSEMDGIXXXXXXXXXXXXXX 189
              L+ AFR A H G D  E   V + I++++VFN+ +L  L  M                 
Sbjct:   219 KLVVAFRCASHAGSDLKEVDKVPYKIVNTAVFNRTLLICLENMPKFFDKLLDYDSVKNSD 278

Query:   190 ETITDLMH-------TKQWKKYNHLVKSYLGNSLHVLNQMTDTEMISFTLRRXXXXXXXX 242
             + ITD  +       +K+W      V SY+ + + +L Q++++ ++   L+         
Sbjct:   279 QEITDANNKTELPSSSKKWNLVKSCVSSYIRSIIQLLTQVSESNLLLIILKGLEKVICYS 338

Query:   243 XXXXXXXRKYVKAALHFWGTGGGALPVVAFLFLRDLCIRLGSDCLDDCFKGIYKAYILNC 302
                    +  +K  L+ W +   ++ ++AFL +R   I      +D C KGIY  ++ N 
Sbjct:   339 SCFTKYSKMLLKHLLNNWSSAEESVRIIAFLCIRKQAILCPFPFIDGCLKGIYLNFVRNS 398

Query:   303 HFINAVKLQHIQFLSNCVVELLGVDLPSAYQHAFVFIRQLAMILRDAFNVKTKEAFRKVY 362
              F++   L  I F+ NCV+E+ G+D  S+Y+ AFV++RQLA+ LR++ N  TKE+F+ +Y
Sbjct:   399 KFVSTTSLPLINFMCNCVIEIYGLDFASSYRSAFVYVRQLAVHLRNSLNTNTKESFQNIY 458

Query:   363 EWKFINCLELWTGAVCAYCSEADMKPLAYPLTQIISGVARLVPTARYFPLRLRCVRMLNR 422
              W+FIN +  W   + AY  +  +  L YP+TQI+ G+  L+P++++ PLR  C+R LNR
Sbjct:   459 NWQFINSVRAWVEVLSAYPGQEQISQLLYPITQIVIGMINLIPSSKFLPLRFHCIRFLNR 518

Query:   423 IAASTGTFI 431
             +A + G+FI
Sbjct:   519 LAETNGSFI 527

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB\|Q3SYU1 NOC2L "Nucleolar complex protein 2 homolog" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

TAIR\|locus:2100006 RBL "REBELOTE" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|F1NV71 NOC2L "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9Y3T9 NOC2L "Nucleolar complex protein 2 homolog" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

ASPGD\|ASPL0000053778 AN0946 [Emericella nidulans (taxid:162425)]	Back alignment and assigned GO terms

MGI\|MGI:1931051 Noc2l "nucleolar complex associated 2 homolog (S. cerevisiae)" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

FB\|FBgn0032925 CG9246 [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

UNIPROTKB\|G4MV71 MGG_08867 "Nucleolar complex protein 2" [Magnaporthe oryzae 70-15 (taxid:242507)]	Back alignment and assigned GO terms

UNIPROTKB\|E9PTF3 Noc2l "Protein Noc2l" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9ZPV5	NOC2L_ARATH	No assigned EC number	0.6646	0.8717	0.8455	yes	no
Q8LNU5	NOC2L_ORYSJ	No assigned EC number	0.5385	0.8556	0.8375	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		741
pfam03715		301	pfam03715, Noc2, Noc2p family	1e-128
COG5604		523	COG5604, COG5604, Uncharacterized conserved protei	1e-49
pfam05477		244	pfam05477, SURF2, Surfeit locus protein 2 (SURF2)	0.004

>gnl\|CDD\|217688 pfam03715, Noc2, Noc2p family	Back alignment and domain information

 Score =  382 bits (983), Expect = e-128
 Identities = 130/300 (43%), Positives = 191/300 (63%), Gaps = 2/300 (0%)

Query: 284 SDCLDDCFKGIYKAYILNCHFINAVKLQHIQFLSNCVVELLGVDLPSAYQHAFVFIRQLA 343
           SD L+   KG+Y A++ N  F N   L  I F+ N   EL G+D   +YQHAFV+IRQLA
Sbjct: 2   SDLLETVLKGMYLAFVKNSKFTNPHTLPLINFMKNSAAELFGLDEEVSYQHAFVYIRQLA 61

Query: 344 MILRDAFNVKTKEAFRKVYEWKFINCLELWTGAVC--AYCSEADMKPLAYPLTQIISGVA 401
           + LR+A N KTK+A++ VY W++I+ L+ W+  +   A  SE+ ++PL YPL Q+I GV 
Sbjct: 62  IHLRNALNSKTKDAYKSVYNWQYIHSLDFWSRVLSAAANGSESPLRPLIYPLVQVILGVI 121

Query: 402 RLVPTARYFPLRLRCVRMLNRIAASTGTFIPVSMLLLDMLEMKELNRPPSGGVGKAVDLR 461
           RL+PTARYFPLRL  +R L R++ STG FIP++ LLL++LE  E N+PP     K  D  
Sbjct: 122 RLIPTARYFPLRLHLIRSLIRLSRSTGVFIPLAPLLLEVLESAEFNKPPKKSTLKPFDFS 181

Query: 462 TVLKVSKPTLKTRAFQEACVYSVVEELAEHLAQWSYSVAFFELSFIPSVRLRDFCKSTKV 521
             LK+SK  L+TR +Q+  +  VVE L E+LA WS S+AF EL     ++L+ F KS+K 
Sbjct: 182 VTLKLSKAYLRTRVYQDGLIEQVVELLTEYLALWSKSIAFPELVLPVVIQLKRFLKSSKN 241

Query: 522 ERFRKEMRQLIRQVDANSEFTNERRMSITFQPNNPSASFFLEDEKKAGSSPLSRYVAILR 581
            +F K+++QL+ +++ NS+F  ++R ++ F PN+ +       + K   +PL +Y    R
Sbjct: 242 AKFNKQLKQLLEKLEQNSKFIEKKRSNVDFGPNDRAEVEAFLKDLKWEKTPLGKYYQSQR 301

At least one member, Noc2p from yeast, is required for a late step in 60S subunit export from the nucleus. It has also been shown to co-precipitate with Nug1p, a nuclear GTPase also required for ribosome nucleus export. This family was formerly known as UPF0120. Length = 301

>gnl\|CDD\|227891 COG5604, COG5604, Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>gnl\|CDD\|218601 pfam05477, SURF2, Surfeit locus protein 2 (SURF2)	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		741
KOG2256		661	consensus Predicted protein involved in nuclear ex	100.0
PF03715		299	Noc2: Noc2p family; InterPro: IPR005343 This is a	100.0
COG5604		523	Uncharacterized conserved protein [Function unknow	100.0
PF04147		840	Nop14: Nop14-like family ; InterPro: IPR007276 Emg	99.05
KOG2147		823	consensus Nucleolar protein involved in 40S riboso	97.97
PF04147		840	Nop14: Nop14-like family ; InterPro: IPR007276 Emg	97.24
KOG2256		661	consensus Predicted protein involved in nuclear ex	96.67
PF03224		312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	89.27
KOG2147		823	consensus Nucleolar protein involved in 40S riboso	87.74
cd00256		429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	85.43
PF03378		435	CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I	82.88
KOG2141		822	consensus Protein involved in high osmolarity sign	81.95

>KOG2256 consensus Predicted protein involved in nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

Probab=100.00  E-value=1.1e-153  Score=1279.46  Aligned_cols=584  Identities=42%  Similarity=0.718  Sum_probs=526.1

Q ss_pred             cccccCcccCcchhhhccCCCCCcccchhHHHHHHHHHHHHhhcChHHHHhhhhhhhhhccCCCCCCccccccc--cccc
Q 004625            6 KARNLDHEICDDEMEEQDETSRPVSKSKKVAKEHKEQLQRLQEKDPEFFKFLQEHDKELLEFDDDDIDDDVETD--MEDA   83 (741)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~hk~~L~~LkekDPEFykyLqEnD~~LL~F~~~d~~dded~~--~ed~   83 (741)
                      -++..++++...+.+..++  ..++..++.++.|+++|++|+++|||||+||++||++||+|++ |.|++++.|  ++|.
T Consensus        37 ~~q~~~a~~~~~~~~~~~~--~~~~~~kg~~~~hk~~l~~l~~~Dp~f~~~~~~~dk~ll~~~~-D~d~d~~lE~~d~Dl  113 (661)
T KOG2256|consen   37 QVQKKDAEDTEREQDDKVD--GKVTSKKGGASKHKKELEKLKDKDPEFFKFLKEEDKELLNFKE-DSDDDEDLEEPDEDL  113 (661)
T ss_pred             chhhhhhcccccccccccc--cccccccchhhhHHHHhhhccccCcHHHHHHHhhhHHHhCCCC-CccchhhccCCcccc
Confidence            3445555555444442222  2456678999999999999999999999999999999999996 333333222  1221


Q ss_pred             cc-ccccCCC-C---CCcccccCCCCCcccHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhcCCCCCCccccEEEcCh
Q 004625           84 EM-QEDEDVG-P---DMEDEEEKPSKNVITTEMVDSWCNSIRENGQLGAVRSLMKAFRIACHYGDDAGEESSVKFHIMSS  158 (741)
Q Consensus        84 e~-~~~~~~~-~---~~~~~~~~~~~~~lT~~~v~~W~~~l~~~~s~~alr~lv~AFRaA~~~~~~~~~~~~~ky~I~ds  158 (741)
                      ++ .++++++ +   +.+...+..+.+.||..||.+|++++...++++.+|++++||||||+|+.+++. .+++|.|+|+
T Consensus       114 ed~~~d~~d~~~~~~~~~~~~~~~~~k~it~~~V~~w~~~l~~~~~~~~~r~vv~af~aAva~~~~~~~-e~~ky~i~ds  192 (661)
T KOG2256|consen  114 EDFSEDEEDDEEDEIDKETDKKKNSGKVITVSNVYSWKQQLEQETSLTLVRRVVQAFRAAVAYGGEDSA-EAPKYVITDS  192 (661)
T ss_pred             cccccccchhhhhhcccchhhhhcccchhhHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHhcccccc-cccceeechH
Confidence            11 1111111 1   111222234455899999999999999999999999999999999999987743 5799999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcccccccccccchhhhHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHhhhc
Q 004625          159 SVFNKIMLFVLSEMDGILRKLLKLPSSGGKKETITDLMHTKQWKKYNHLVKSYLGNSLHVLNQMTDTEMISFTLRRLKFS  238 (741)
Q Consensus       159 ~VFn~vv~~~L~~lp~~l~~lL~~~~~~gkk~~~~~l~~~~~wkkl~~liKsyl~sll~LL~~ltd~~~l~~vL~~l~~l  238 (741)
                      ++||+||.+||+++|++|+++|+++..++....   +....+|.++++++|+|++++||||+++||+++++++|++++++
T Consensus       193 ~~Fn~vv~~~lq~~~~~l~~ll~~k~~~~~~~~---~~~~~~w~k~~~~vKsYl~s~l~Ll~~~t~te~~~~~L~~l~~l  269 (661)
T KOG2256|consen  193 EAFNAVVIFCLQEMPDILRKLLRGKVDKDKSLF---LKTASKWYKLRVLVKSYLGSSLHLLNQLTDTEVLAFTLRHLTVL  269 (661)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHcCCCcCCCcccc---ccccccchhhhHHHHHHhHHHHHHHHHcchHHHHHHHHHHHHHH
Confidence            999999999999999999999999875444322   22334499999999999999999999999999999999999999


Q ss_pred             ceeeeechhhHHHHHHHHHHhhccCCCchhHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhhccccCccchhhHHHHHH
Q 004625          239 SLFLAAFPSLLRKYVKAALHFWGTGGGALPVVAFLFLRDLCIRLGSDCLDDCFKGIYKAYILNCHFINAVKLQHIQFLSN  318 (741)
Q Consensus       239 ~p~l~~f~kl~k~~LK~lv~lWst~~~~vrv~AFl~Lr~l~~~~~~~~le~~LK~~Y~ayv~n~k~~n~~tl~~InfM~N  318 (741)
                      +|||++||+++|.++|++|++||||++++|++||+||+++|+.....|++.|||+||.+||+||++|+++|||+||||+|
T Consensus       270 ~~~~~~f~k~lk~liK~~V~vWstge~~~rv~Afl~l~~l~~~~~~~~l~~vlk~mY~afv~nsk~~~~~tl~~i~Fl~~  349 (661)
T KOG2256|consen  270 VPFLATFPKLLKKLIKAVVHVWSTGEESLRVLAFLCLIDLCRKFKSTCLDPVLKTMYLAFVRNSKFVTVNTLPLINFLQN  349 (661)
T ss_pred             HHHHhhHHHHHHHHHHHHheeeccCCcchhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCCCCCCcccchhHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCccchhHHHHHHHHHHHHHHHHHhhhccchhhceecchhhHHHHHHHHHHHh-ccCCCCCCccchhhHHHHH
Q 004625          319 CVVELLGVDLPSAYQHAFVFIRQLAMILRDAFNVKTKEAFRKVYEWKFINCLELWTGAVC-AYCSEADMKPLAYPLTQII  397 (741)
Q Consensus       319 ~~vEL~~ld~~~aYq~AF~YIRQLAihLRna~~~ktKe~~k~VYNWQfv~sL~lWs~VLs-~~~~~s~L~pLiYPLvQIi  397 (741)
                      |++||||+|+..+|||||+|||||||||||||+.++|++++.||||||||||+||++||| ++..+++|+||+|||||||
T Consensus       350 slvEL~~ld~~~~Yq~aF~yIrQLAihLRnam~~k~K~s~~~VYnWqfi~cL~lW~rvisf~~~~~s~lq~LvYpLvQvi  429 (661)
T KOG2256|consen  350 SLVELLGLDLQVSYQHAFVYIRQLAIHLRNAMITKNKESVQSVYNWQYVHCLDLWLRVISFANGSASQLQPLVYPLVQVI  429 (661)
T ss_pred             HHHHHhccCHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccHhhhhhhhhHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999 8878899999999999999


Q ss_pred             HhhhhcccCccccchhhHHHHHHHHHHhhcCccccchHHHHHHhhcccccCCCCCCCCCccccchhhccCccccccHHHH
Q 004625          398 SGVARLVPTARYFPLRLRCVRMLNRIAASTGTFIPVSMLLLDMLEMKELNRPPSGGVGKAVDLRTVLKVSKPTLKTRAFQ  477 (741)
Q Consensus       398 ~G~irLiPt~ry~PLR~h~ir~L~~Ls~~Tg~FIPl~p~LleiL~s~~~~kk~k~~~~kplDf~~~LKvsks~L~t~~yq  477 (741)
                      +|||||+||+|||||||||||+||+||++||+||||+|+|+|||.+..++++|++++++|+||.++||||+.+|++++||
T Consensus       430 ~GvirLipT~qy~PLRlhcir~Li~Ls~ssg~fIPi~~ll~Eml~~~~~nrkp~~~~~k~~D~~~~Lk~sk~~L~sk~yq  509 (661)
T KOG2256|consen  430 LGVIRLIPTPQYYPLRLHCIRSLISLSRSSGTFIPLSPLLVEMLKSVTFNRKPKASSVKPIDFDSTLKLSKRYLRSKAYQ  509 (661)
T ss_pred             HHHhhhcCcccchhHHHHHHHHHHHHHhhcCceeecHHHHHHHHHHhhccCCccccccCCCCeeEEeecCHHHhccHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhcCcccccchhhHHHHHHhHhhhcchHHHHHHHHHHHHHHHHhHHHHHHhhcCCCCCCCCh-
Q 004625          478 EACVYSVVEELAEHLAQWSYSVAFFELSFIPSVRLRDFCKSTKVERFRKEMRQLIRQVDANSEFTNERRMSITFQPNNP-  556 (741)
Q Consensus       478 d~vie~~~eLL~eyla~~S~sIAFPEL~~Pii~~LKrf~K~~kv~~~~k~lK~Li~kIeens~~I~~kR~~v~f~p~d~-  556 (741)
                      ++|++++++||++|+++||++||||||++|++++||+|+|+|++++|++.+++|+++|++|++||.++|..++|+|+|. 
T Consensus       510 ~~~ieqv~~lL~ey~a~~s~~IaFPELv~p~i~rLk~f~k~skn~~~~r~v~~li~kle~ns~FV~~kR~~v~F~pnD~~  589 (661)
T KOG2256|consen  510 DGVIEQVIELLLEYFALFSKSIAFPELVLPVIMRLKSFLKESKNGNYKRVVKQLIEKLEENSKFVLEKRNKVKFSPNDQQ  589 (661)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHhcCccCCCcHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             HHhhHHHHhhhcCCCChHHHHHHHHHHHHHHHhhhhhccce
Q 004625          557 SASFFLEDEKKAGSSPLSRYVAILRQRARQRNDSLMESSVL  597 (741)
Q Consensus       557 ~v~~fle~~~~~~~tPL~~y~~~~r~~~~~~~~~l~e~~v~  597 (741)
                      +|..| +.+..|.+|||++||++||++++++++..+|+...
T Consensus       590 ~V~af-e~~~~~~~TPl~~yy~~~rk~~~~k~r~~~e~~~~  629 (661)
T KOG2256|consen  590 AVSAF-EQDLDWNKTPLGQYYSSWRKVREEKNRLAVESSEE  629 (661)
T ss_pred             HHHHH-HHHHHccCCcHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence            77777 58889999999999999999999999998887654

>PF03715 Noc2: Noc2p family; InterPro: IPR005343 This is a small family of mainly hypothetical proteins of unknown function	Back alignment and domain information

>COG5604 Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production []	Back alignment and domain information

>KOG2147 consensus Nucleolar protein involved in 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production []	Back alignment and domain information

>KOG2256 consensus Predicted protein involved in nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane	Back alignment and domain information

>KOG2147 consensus Nucleolar protein involved in 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments	Back alignment and domain information

>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []	Back alignment and domain information

>KOG2141 consensus Protein involved in high osmolarity signaling pathway [Signal transduction mechanisms]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		741
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-10
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-09
3h38_A		441	TRNA nucleotidyl transferase-related protein; tran	8e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 62.6 bits (151), Expect = 3e-10
 Identities = 86/571 (15%), Positives = 158/571 (27%), Gaps = 167/571 (29%)

Query: 60  HDKELLEFDDDDID---DDVETDMEDAEMQEDEDVGPDMEDEEEKPSKNVITTEMVDSWC 116
           H    ++F+  +      D+ +  EDA   ++ D   D++D      K++++ E +D   
Sbjct: 2   HHHHHMDFETGEHQYQYKDILSVFEDA-FVDNFDC-KDVQDMP----KSILSKEEID--- 52

Query: 117 NSIRENGQLGAVRSLMKAFRIACHYGDDAGEESSVKFHIMSSSVFNKIMLFVLSEMDGIL 176
           + I     +     L               EE   KF                  ++ +L
Sbjct: 53  HIIMSKDAVSGTLRLFWTLL-------SKQEEMVQKF------------------VEEVL 87

Query: 177 RKLLKLPSSGGKKETITDLMHTKQWKKYNHLVKSYLGNSLHVLNQMTDTEMISFTLRRLK 236
           R   K   S  K E     M T+ + +     +  L N   V  +   +       R   
Sbjct: 88  RINYKFLMSPIKTEQRQPSMMTRMYIEQ----RDRLYNDNQVFAKYNVS-------RLQP 136

Query: 237 FSSLFLAAFPSLLRKYVKAALHFWGTGGGALPVVAFLFLRDLCIRLGSDCLDDCFKGIYK 296
           +  L  A     LR      +   G  G     VA        ++   D        I+ 
Sbjct: 137 YLKLRQALLE--LRPAKNVLID--GVLGSGKTWVALDVCLSYKVQCKMDF------KIFW 186

Query: 297 AYILNCHFINAVKLQHIQFLSNCVVELL--GVDLPSAYQHAFVFIRQ------------- 341
             + NC+    V L+ +Q L   +        D  S  +     I+              
Sbjct: 187 LNLKNCNSPETV-LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN 245

Query: 342 -LAMILRDAFNVKTKEAFRKVYEWKFINC------------------------------- 369
            L ++L +  N K   AF        ++C                               
Sbjct: 246 CL-LVLLNVQNAKAWNAFN-------LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT 297

Query: 370 ------LELWTGAVCAYCSEADMKPLA---YPLTQIISGVARLVPTARYFPLRLRCVRML 420
                   L        C   D+        P    +S +A  +   R         + +
Sbjct: 298 LTPDEVKSLL--LKYLDCRPQDLPREVLTTNPR--RLSIIAESI---RDGLATWDNWKHV 350

Query: 421 NRIAASTGTFIPVSMLLLDMLEMKELNR-----PPSGGVGKAVDLRTVLKVSKPTLKT-- 473
           N    +  T I  S+ +L+  E +++       PPS              +    L    
Sbjct: 351 NCDKLT--TIIESSLNVLEPAEYRKMFDRLSVFPPS------------AHIPTILLSLIW 396

Query: 474 RAFQEACVYSVVEELAEH--LAQWSYSVAFFELSFIPSVRLRDFCKSTKVERFRKEM-RQ 530
               ++ V  VV +L ++  + +            IPS+ L    K          + R 
Sbjct: 397 FDVIKSDVMVVVNKLHKYSLVEKQPKE----STISIPSIYLELKVKLEN----EYALHRS 448

Query: 531 LIRQVDANSEFTNERRMSITFQPNNPSASFF 561
           ++   +    F ++        P      F+
Sbjct: 449 IVDHYNIPKTFDSD-----DLIPPYLDQYFY 474

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>3h38_A TRNA nucleotidyl transferase-related protein; transferase/RNA, nucleotide-binding, RNA-binding; 2.37A {Thermotoga maritima} PDB: 3h37_A 3h39_A* 3h3a_A* Length = 441	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		741
d2dexx3		370	d.126.1.5 (X:294-663) Peptidylarginine deiminase P	0.004

>d2dexx3 d.126.1.5 (X:294-663) Peptidylarginine deiminase Pad4, catalytic C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 370	Back information, alignment and structure


class: Alpha and beta proteins (a+b)
fold: Pentein, beta/alpha-propeller
superfamily: Pentein
family: Peptidylarginine deiminase Pad4, catalytic C-terminal domain
domain: Peptidylarginine deiminase Pad4, catalytic C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.8 bits (88), Expect = 0.004
 Identities = 27/133 (20%), Positives = 54/133 (40%), Gaps = 31/133 (23%)

Query: 185 SGGKKETITDLMHTKQWKKYNHLVKSYLGNSLHVLNQ---MTDTEMISF-TLRRLKFSSL 240
              K++ I +++  K  +++N  V+  +  +  +L +   + ++++I    L +LK  S 
Sbjct: 226 KKKKQQKIKNILSNKTLREHNSFVERCIDWNRELLKRELGLAESDIIDIPQLFKLKEFSK 285

Query: 241 FLAAFPSLLRKYVKAALHFWGTGGGAL-------PVVAFLFLRDLCIRLGSDCLDDCFKG 293
             A FP+++   V          G  L       PV+            G  CL++    
Sbjct: 286 AEAFFPNMVNMLV---------LGKHLGIPKPFGPVI-----------NGRCCLEEKVCS 325

Query: 294 IYKAYILNCHFIN 306
           + +   L C FIN
Sbjct: 326 LLEPLGLQCTFIN 338

PyMOL of d2dexx3

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00