Citrus Sinensis ID: 004627

Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-
MGLGLLASRAMRPLKYSNSRVFIRSIVSKPELQSPEASSAAAATALEPDLPPRSPVGGARVHFPNPEDAIEVFVDGYPLKIPKGFTVLQACEVAGVDIPRFCYHSRLSIAGNCRMCLVEVEKSPKPVASCAMPALPGMKIKTDTPLAKKAREGVMEFLLMNHPLDCPICDQGGECDLQDQSMAFGSDRGRFTEMKRSVVDKNLGPLVKTVMTRCIQCTRCVRFATEVAGVQDLGMLGRGSGEEIGTYVEKLMTSELSGNVIDICPVGALTSKPFAFKARNWELKGTETIDVTDAVGSNIRIDSRGPEVMRILPRLNEDINEEWISDKTRFCYDGLKSQRLNDPMIRGADGRFKAVNWRDALAVVAEVMLQAKPEEIVGIAGRLSDAESMMALKDFLNRMGSNNVWCEGTGAQSNADLRSGYIMNTSISGLEKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPATDLNYDHQHLGTGPKTLLEIAEGRHPFFSAISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNVIRPDWNGLNVLLLNAAQAAALDLGLVPESSNSIESAKFVYLMGADDVDLEKLPNDAFVVYQGHHGDHGVYRANVILPASAFSEKEGTYENTEGCTQQTLPAVPTVGDARDDWKIIRALSEVAGMRLPYDTIGGIRSRIRTVAPNLLHVDEREPATLGPSLKPEIKSEMDLTPFGSAVENFYMTDSITRASKTMAQCSAMLLKK
ccccHHHHHccccccccccHHHHHHHccccccccHHHHHHHHHccccccccccccccccccccccccccEEEEEccEEEECcccccHHHHHHHcccccccccccccccccccccccEEEEccccccccccccccccccEEEcccHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHccccccccccccccccccccccEEccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEECccEEEEEccccccccccccccccccccccccccccccccEEEcccccEEEccHHHHHHHHHHHHHHcccccEEEEEccccHHHHHHHHHHHHHHcccccCCcccccccccccccccccccccccccccccEEEEEcccccHHHHHHHHHHHHHHHHcccEEEEEcccccccccccccccccHHHHHHHcccccHHHHHHcccccEEEEcccccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHccccccHHcccccccEEEEEcccccccccccEEEEccccccccccEEEcccccccccccccccccccccHHHHHHHHHHHHccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccHHHHccHHHHHHHHHHHcc
*******SRAMRPLKYSNSRVFIR******************************************EDAIEVFVDGYPLKIPKGFTVLQACEVAGVDIPRFCYHSRLSIAGNCRMCLVEVEKSPKPVASCAMPALPGMKIKTDTPLAKKAREGVMEFLLMNHPLDCPICDQGGECDLQDQSMAFGSDRGRFTEMKRSVVDKNLGPLVKTVMTRCIQCTRCVRFATEVAGVQDLGMLGRGSGEEIGTYVEKLMTSELSGNVIDICPVGALTSKPFAFKARNWELKGTETIDVTDAVGSNIRIDSRGPEVMRILPRLNEDINEEWISDKTRFCYDGLKSQRLNDPMIRGADGRFKAVNWRDALAVVAEVMLQAKPEEIVGIAGRLSDAESMMALKDFLNRMGSNNVWCEGTGAQSNADLRSGYIMNTSISGLEKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPATDLNYDHQHLGTGPKTLLEIAEGRHPFFSAISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNVIRPDWNGLNVLLLNAAQAAALDLGLVPESSNSIESAKFVYLMGADDVDLEKLPNDAFVVYQGHHGDHGVYRANVILPASAFSEKEGTYENTEGCTQQTLPAVPTVGDARDDWKIIRALSEVAGMRLPYDTIGGIRSRIRTVAPNLLHVDEREPATLGP*************PFGSAVENFYMTDSITRASKTMAQCS******
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MGLGLLASRAMRPLKYSNSRVFIRSIVSKPELQSPEASSAAAATALEPDLPPRSPVGGARVHFPNPEDAIEVFVDGYPLKIPKGFTVLQACEVAGVDIPRFCYHSRLSIAGNCRMCLVEVEKSPKPVASCAMPALPGMKIKTDTPLAKKAREGVMEFLLMNHPLDCPICDQGGECDLQDQSMAFGSDRGRFTEMKRSVVDKNLGPLVKTVMTRCIQCTRCVRFATEVAGVQDLGMLGRGSGEEIGTYVEKLMTSELSGNVIDICPVGALTSKPFAFKARNWELKGTETIDVTDAVGSNIRIDSRGPEVMRILPRLNEDINEEWISDKTRFCYDGLKSQRLNDPMIRGADGRFKAVNWRDALAVVAEVMLQAKPEEIVGIAGRLSDAESMMALKDFLNRMGSNNVWCEGTGAQSNADLRSGYIMNTSISGLEKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPATDLNYDHQHLGTGPKTLLEIAEGRHPFFSAISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNVIRPDWNGLNVLLLNAAQAAALDLGLVPESSNSIESAKFVYLMGADDVDLEKLPNDAFVVYQGHHGDHGVYRANVILPASAFSEKEGTYENTEGCTQQTLPAVPTVGDARDDWKIIRALSEVAGMRLPYDTIGGIRSRIRTVAPNLLHVDEREPATLGPSLKPEIKSEMDLTPFGSAVENFYMTDSITRASKTMAQCSAMLLKK

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
NADH dehydrogenase [ubiquinone] iron-sulfur protein 1, mitochondrial Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone (By similarity). This is the largest subunit of complex I and it is a component of the iron-sulfur (IP) fragment of the enzyme. It may form part of the active site crevice where NADH is oxidized.confidentQ9FGI6
NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone (By similarity). This is the largest subunit of complex I and it is a component of the iron-sulfur (IP) fragment of the enzyme. It may form part of the active site crevice where NADH is oxidized.probableQ91VD9
NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone. This is the largest subunit of complex I and it is a component of the iron-sulfur (IP) fragment of the enzyme. It may form part of the active site crevice where NADH is oxidized.probableP15690

Prediction of Enzyme Commission Number ?

EC Number ?Description ?Confidence Level ?
1.-.-.-Oxidoreductases.probable
1.6.-.-Acting on NADH or NADPH.probable
1.6.99.-With other acceptors.probable
1.6.5.-With a quinone or similar compound as acceptor.probable
1.6.5.3NADH:ubiquinone reductase (H(+)-translocating).probable
1.6.99.3Transferred entry: 1.6.99.3.probable

Spatial Structural Prediction

Structural Models Based on Templates

Template: 3I9V, chain 3
Confidence level:confident
Coverage over the Query: 70-677,692-736
View the alignment between query and template
View the model in PyMOL