Citrus Sinensis ID: 004627

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-

MGLGLLASRAMRPLKYSNSRVFIRSIVSKPELQSPEASSAAAATALEPDLPPRSPVGGARVHFPNPEDAIEVFVDGYPLKIPKGFTVLQACEVAGVDIPRFCYHSRLSIAGNCRMCLVEVEKSPKPVASCAMPALPGMKIKTDTPLAKKAREGVMEFLLMNHPLDCPICDQGGECDLQDQSMAFGSDRGRFTEMKRSVVDKNLGPLVKTVMTRCIQCTRCVRFATEVAGVQDLGMLGRGSGEEIGTYVEKLMTSELSGNVIDICPVGALTSKPFAFKARNWELKGTETIDVTDAVGSNIRIDSRGPEVMRILPRLNEDINEEWISDKTRFCYDGLKSQRLNDPMIRGADGRFKAVNWRDALAVVAEVMLQAKPEEIVGIAGRLSDAESMMALKDFLNRMGSNNVWCEGTGAQSNADLRSGYIMNTSISGLEKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPATDLNYDHQHLGTGPKTLLEIAEGRHPFFSAISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNVIRPDWNGLNVLLLNAAQAAALDLGLVPESSNSIESAKFVYLMGADDVDLEKLPNDAFVVYQGHHGDHGVYRANVILPASAFSEKEGTYENTEGCTQQTLPAVPTVGDARDDWKIIRALSEVAGMRLPYDTIGGIRSRIRTVAPNLLHVDEREPATLGPSLKPEIKSEMDLTPFGSAVENFYMTDSITRASKTMAQCSAMLLKK

ccccHHHHHccccccccccHHHHHHHccccccccHHHHHHHHHccccccccccccccccccccccccccEEEEEccEEEEEcccccHHHHHHHcccccccccccccccccccccccEEEEccccccccccccccccccEEEcccHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHccccccccccccccccccccccEEccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccEEEEEccccccccccccccccccccccccccccccccEEEcccccEEEccHHHHHHHHHHHHHHcccccEEEEEccccHHHHHHHHHHHHHHcccccEEcccccccccccccccccccccccccccccEEEEEcccccHHHHHHHHHHHHHHHHcccEEEEEcccccccccccccccccHHHHHHHcccccHHHHHHcccccEEEEcccccccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHcccccHHHcccccccEEEEEcccccccccccEEEEccccccccccEEEcccccccccccccccccccccHHHHHHHHHHHHccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccHHHHccHHHHHHHHHHHcc

ccHHHHHHHHccccccccccEEEEEEEccHccccHHHHHHHccccccccccccccccccccccccHcccEEEEEccEEEEccccHHHHHHHHHHcccccccccccHEEEcccccEEEEEEccccccEEEcccccccccEEEcccHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHccccccccccccEEEcccccHHHHHHccHEEEccHHHHHHHHHccccHccccccccccEHHHHHHHHHHHHccccEEEccccccccccccEEEEcccEccccccEEEHccccccEEEEcccHHHEEEcccccHHHcHHHHHccccEHHcccccccccccEEEcccccEEEccHHHHHHHHHHHHHcccHHHEEEEEccHHcHHHHHHHHHHHHHcccccccccccccccccccccHEcEccccccHHHccEEEEEccccHHHHHHHHHHHHHHHHHcccEEEEEcccccccEcHHHccccHHHHHHHHccccHHHHHHHHccccEEEEccHHHccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHccccccccHcccccEEEEEEccccccHHHcccccEEEEEcccccccccccEEEEccccEEccccEEEcccccHEcccccccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHcccHEEccccccccHHHHHHHcccccccccccccccHccccccHHHcccHHHHHHHHHHHcc

mglgllasramrplkysnsRVFIRSIvskpelqspeasSAAAATalepdlpprspvggarvhfpnpedaievfvdgyplkipkgftVLQACevagvdiprfcyhsrlsiagnCRMCLVevekspkpvascampalpgmkiktdtplAKKAREGVMEFLLmnhpldcpicdqggecdlqdqsmafgsdrgrftemKRSVVDKNLGPLVKTVMTRCIQCTRCVRFATEvagvqdlgmlgrgsgeEIGTYVEKLMTSelsgnvidicpvgaltskpfafkarnwelkgtetidvtdavgsniridsrgpevmrilprlnedineewisdktrfcydglksqrlndpmirgadgrfkavNWRDALAVVAEVMLQAKPEEIVGIAGRLSDAESMMALKDFLNrmgsnnvwcegtgaqsnadlrsgyimntsisglekadcfllvgtQPRVEAAMVNARIRKTVRannakvgyigpatdlnydhqhlgtgpkTLLEIAegrhpffsaisnaknpviIVGAglferkdkdAIFSTVEAIAKKgnvirpdwnGLNVLLLNAAQAAALdlglvpessnsieSAKFVYLmgaddvdleklpndafvvyqghhgdhgvyranvilpasafsekegtyentegctqqtlpavptvgdardDWKIIRALSEVagmrlpydtiggiRSRIrtvapnllhvderepatlgpslkpeiksemdltpfgsavenfYMTDSITRASKTMAQCSAMLLKK

mglgllasramrplkysnsRVFIRSIVSKPELQSPEASSAAAATALEPDLPPRSPVGGARVHFPNPEDAIEVFVDGYPLKIPKGFTVLQACEVAGVDIPRFCYHSRLSIAGNCRMCLVEVEKSPKPVASCAMPALPGMKIKTDTPLAKKAREGVMEFLLMNHPLDCPICDQGGECDLQDQSMAFGSdrgrftemkrsvvdknlgplvKTVMTRCIQCTRCVRFAtevagvqdlgmlgrgsGEEIGTYVEKLMTSELSGNVIDICPVGALTSKPFAFKARnwelkgtetidvtdavgsniridsrgpevmrILPRLNEDINEEWISDKTRFCYDGLksqrlndpmirgADGRFKAVNWRDALAVVAEVMLQAKPEEIVGIAGRLSDAESMMALKDFLNRMGSNNVWCEGTGAQSNADLRSGYIMNTSISGLEKADCFLLVGTQPRVEAAMVNARIRKtvrannakvgyigpatdlnydHQHLGTGPKTLLEIAEGRHPFfsaisnaknPVIIVGAGLFERKDKDAIFSTVEAiakkgnvirpDWNGLNVLLLNAAQAAALDLGLVPESSNSIESAKFVYLMGADDVDLEKLPNDAFVVYQGHHGDHGVYRANVILPASAFSEKEGTyentegctqqtlpavptvgdarDDWKIIRALsevagmrlpydtiggirsRIRTVApnllhvderepatlgpslkpeiksEMDLTPFGSAVENFYMTDSITRASKTMAQCSAMLLKK

MGLGLLASRAMRPLKYSNSRVFIRSIVSKpelqspeassaaaatalepdlppRSPVGGARVHFPNPEDAIEVFVDGYPLKIPKGFTVLQACEVAGVDIPRFCYHSRLSIAGNCRMCLVEVEKSPKPVASCAMPALPGMKIKTDTPLAKKAREGVMEFLLMNHPLDCPICDQGGECDLQDQSMAFGSDRGRFTEMKRSVVDKNLGPLVKTVMTRCIQCTRCVRFATEVAGVQDLGMLGRGSGEEIGTYVEKLMTSELSGNVIDICPVGALTSKPFAFKARNWELKGTETIDVTDAVGSNIRIDSRGPEVMRILPRLNEDINEEWISDKTRFCYDGLKSQRLNDPMIRGADGRFKAVNWRDALAVVAEVMLQAKPEEIVGIAGRLSDAESMMALKDFLNRMGSNNVWCEGTGAQSNADLRSGYIMNTSISGLEKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPATDLNYDHQHLGTGPKTLLEIAEGRHPFFSAISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNVIRPDWNglnvlllnaaqaaaldlglvPESSNSIESAKFVYLMGADDVDLEKLPNDAFVVYQGHHGDHGVYRANVILPASAFSEKEGTYENTEGCTQQTLPAVPTVGDARDDWKIIRALSEVAGMRLPYDTIGGIRSRIRTVAPNLLHVDEREPATLGPSLKPEIKSEMDLTPFGSAVENFYMTDSITRASKTMAQCSAMLLKK

********************VFIR**************************************F**PEDAIEVFVDGYPLKIPKGFTVLQACEVAGVDIPRFCYHSRLSIAGNCRMCLVEVEK****VASCAMPAL****I*****LAKKAREGVMEFLLMNHPLDCPICDQGGECDLQ************FTEMKRSVVDKNLGPLVKTVMTRCIQCTRCVRFATEVAGVQDLGMLGRGSGEEIGTYVEKLMTSELSGNVIDICPVGALTSKPFAFKARNWELKGTETIDVTDAVGSNIRIDSRGPEVMRILPRLNEDINEEWISDKTRFCYDGLKSQRLNDPMIRGADGRFKAVNWRDALAVVAEVMLQAKPEEIVGIAGRLSDAESMMALKDFLNRMGSNNVWCEGTGAQSNADLRSGYIMNTSISGLEKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPATDLNYDHQHLGTGPKTLLEIAEGRHPFFSAISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNVIRPDWNGLNVLLLNAAQAAALDLGLVPESSNSIESAKFVYLMGADDVDLEKLPNDAFVVYQGHHGDHGVYRANVILPASAFSEKEGTYENTEGCTQQTLPAVPTVGDARDDWKIIRALSEVAGMRLPYDTIGGIRSRIRTVAPNLLHV**************************SAVENFYMTD*******************

*******SRAMRPLKYSNSRVF***********************************************IEVFVDGYPLKIPKGFTVLQACEVAGVDIPRFCYHSRLSIAGNCRMCLVEVEKSPKPVASCAMPALPGMKIKTDTPLAKKAREGVMEFLLMNHPLDCPICDQGGECDLQDQSMAFGSDRGRFTEMKRSVVDKNLGPLVKTVMTRCIQCTRCVRFATEVAGVQDLGMLGRGSGEEIGTYVEKLMTSELSGNVIDICPVGALTSKPFAFKARNWELKGTETIDVTDAVGSNIRIDSRGPEVMRILPRLNEDINEEWISDKTRFCYDGLKSQRLNDPMIRGADGRFKAVNWRDALAVVAEVMLQAKPEEIVGIAGRLSDAESMMALKDFLNRMGSNNVWCEGTGAQSNADLRSGYIMNTSISGLEKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPATDLNYDHQHLGTGPKTLLEIAEGRHPFFSAISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNVIRPDWNGLNVLLLNAAQAAALDLGLVPESSNSIESAKFVYLMGADDVDLEKLPNDAFVVYQGHHGDHGVYRANVILPASAFSEKEGTYENTEGCTQQTLPAVPTVGDARDDWKIIRALSEVAGMRLPYDTIGGIRSRIRTVAPNLLHVDEREPATLGP*************PFGSAVENFYMTDSITRASKTMAQCS******

MGLGLLASRAMRPLKYSNSRVFIRSIVSKP*************TALEPDLPPRSPVGGARVHFPNPEDAIEVFVDGYPLKIPKGFTVLQACEVAGVDIPRFCYHSRLSIAGNCRMCLVEVEKSPKPVASCAMPALPGMKIKTDTPLAKKAREGVMEFLLMNHPLDCPICDQGGECDLQDQSMAFGSDRGRFTEMKRSVVDKNLGPLVKTVMTRCIQCTRCVRFATEVAGVQDLGMLGRGSGEEIGTYVEKLMTSELSGNVIDICPVGALTSKPFAFKARNWELKGTETIDVTDAVGSNIRIDSRGPEVMRILPRLNEDINEEWISDKTRFCYDGLKSQRLNDPMIRGADGRFKAVNWRDALAVVAEVMLQAKPEEIVGIAGRLSDAESMMALKDFLNRMGSNNVWCEGTGAQSNADLRSGYIMNTSISGLEKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPATDLNYDHQHLGTGPKTLLEIAEGRHPFFSAISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNVIRPDWNGLNVLLLNAAQAAALDLGLVPESSNSIESAKFVYLMGADDVDLEKLPNDAFVVYQGHHGDHGVYRANVILPASAFSEKEGTYENTEGCTQQTLPAVPTVGDARDDWKIIRALSEVAGMRLPYDTIGGIRSRIRTVAPNLLHVDEREPATLGPSLKPEIKSEMDLTPFGSAVENFYMTDSITRASKTMAQCSAMLLKK

*GLGLLASRAMRPLKYSNSRVFIRSIVSKPEL**********************************EDAIEVFVDGYPLKIPKGFTVLQACEVAGVDIPRFCYHSRLSIAGNCRMCLVEVEKSPKPVASCAMPALPGMKIKTDTPLAKKAREGVMEFLLMNHPLDCPICDQGGECDLQDQSMAFGSDRGRFTEMKRSVVDKNLGPLVKTVMTRCIQCTRCVRFATEVAGVQDLGMLGRGSGEEIGTYVEKLMTSELSGNVIDICPVGALTSKPFAFKARNWELKGTETIDVTDAVGSNIRIDSRGPEVMRILPRLNEDINEEWISDKTRFCYDGLKSQRLNDPMIRGADGRFKAVNWRDALAVVAEVMLQAKPEEIVGIAGRLSDAESMMALKDFLNRMGSNNVWCEGTGAQSNADLRSGYIMNTSISGLEKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPATDLNYDHQHLGTGPKTLLEIAEGRHPFFSAISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNVIRPDWNGLNVLLLNAAQAAALDLGLVPESSNSIESAKFVYLMGADDVDLEKLPNDAFVVYQGHHGDHGVYRANVILPASAFSEKEGTYENTEGCTQQTLPAVPTVGDARDDWKIIRALSEVAGMRLPYDTIGGIRSRIRTVAPNLLHVDEREPATLGPSLKPEIKSEMDLTPFGSAVENFYMTDSITRASKTMAQCSAMLLK*

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		741	2.2.26 [Sep-21-2011]
Q43644		738	NADH dehydrogenase [ubiqu	N/A	no	0.991	0.995	0.839	0.0
Q9FGI6		748	NADH dehydrogenase [ubiqu	yes	no	1.0	0.990	0.814	0.0
P28331		727	NADH-ubiquinone oxidoredu	yes	no	0.914	0.932	0.55	0.0
P15690		727	NADH-ubiquinone oxidoredu	yes	no	0.919	0.936	0.555	0.0
Q0MQG2		727	NADH-ubiquinone oxidoredu	yes	no	0.914	0.932	0.548	0.0
O21241		691	NADH-ubiquinone oxidoredu	N/A	no	0.898	0.963	0.537	0.0
Q0MQG1		727	NADH-ubiquinone oxidoredu	N/A	no	0.914	0.932	0.548	0.0
P0CB68		727	NADH-ubiquinone oxidoredu	N/A	no	0.914	0.932	0.547	0.0
Q4R6K9		727	NADH-ubiquinone oxidoredu	N/A	no	0.914	0.932	0.548	0.0
P0CB67		727	NADH-ubiquinone oxidoredu	yes	no	0.920	0.938	0.545	0.0

>sp\|Q43644\|NDUS1_SOLTU NADH dehydrogenase [ubiquinone] iron-sulfur protein 1, mitochondrial OS=Solanum tuberosum PE=2 SV=1	Back alignment and function desciption

 Score = 1296 bits (3354), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 624/743 (83%), Positives = 677/743 (91%), Gaps = 8/743 (1%)

Query: 1   MGLGLLASRAMRPLKYSNSRVF---IRSIVSKPELQSPEASSAAAATALEPDLPPRSPVG 57
           MGLGLLASRA+R     +SR+     R+IVS PEL++ +A++AAAA     DLP R PVG
Sbjct: 1   MGLGLLASRALR-----SSRIIRNSTRTIVSTPELKNADAAAAAAAADAPSDLPKRHPVG 55

Query: 58  GARVHFPNPEDAIEVFVDGYPLKIPKGFTVLQACEVAGVDIPRFCYHSRLSIAGNCRMCL 117
           GARVH PNPED IEVFVDGYP+KIPKG TVLQACE+AGVDIPRFCYHSRLSIAGNCRMCL
Sbjct: 56  GARVHLPNPEDVIEVFVDGYPVKIPKGMTVLQACEIAGVDIPRFCYHSRLSIAGNCRMCL 115

Query: 118 VEVEKSPKPVASCAMPALPGMKIKTDTPLAKKAREGVMEFLLMNHPLDCPICDQGGECDL 177
           VEVEKSPKPVASCAMPALPGMKIKTDTP+AKKAREGVMEFLLMNHPLDCPICDQGGECDL
Sbjct: 116 VEVEKSPKPVASCAMPALPGMKIKTDTPIAKKAREGVMEFLLMNHPLDCPICDQGGECDL 175

Query: 178 QDQSMAFGSDRGRFTEMKRSVVDKNLGPLVKTVMTRCIQCTRCVRFATEVAGVQDLGMLG 237
           QDQSMAFGSDRGRFTEMKRSVVDKNLGPLVKTVMTRCIQCTRCVRFA+EVAGV+DLGMLG
Sbjct: 176 QDQSMAFGSDRGRFTEMKRSVVDKNLGPLVKTVMTRCIQCTRCVRFASEVAGVEDLGMLG 235

Query: 238 RGSGEEIGTYVEKLMTSELSGNVIDICPVGALTSKPFAFKARNWELKGTETIDVTDAVGS 297
           RGSGEEIGTYVEKLMTSELSGNVIDICPVGALTSKPFAFKARNWELKGTE+IDVTDAVGS
Sbjct: 236 RGSGEEIGTYVEKLMTSELSGNVIDICPVGALTSKPFAFKARNWELKGTESIDVTDAVGS 295

Query: 298 NIRIDSRGPEVMRILPRLNEDINEEWISDKTRFCYDGLKSQRLNDPMIRGADGRFKAVNW 357
           NIRIDSRGPEVMR++PRLNEDINEEWISDKTRF YDGLK QRLNDPMIRGADGRF+AV+W
Sbjct: 296 NIRIDSRGPEVMRVVPRLNEDINEEWISDKTRFFYDGLKRQRLNDPMIRGADGRFQAVSW 355

Query: 358 RDALAVVAEVMLQAKPEEIVGIAGRLSDAESMMALKDFLNRMGSNNVWCEGTGAQSNADL 417
           RDALA+VAEVM Q KPEEIVG+AG+LSDAESMMALKD LN+MGSNN++CEG G   NADL
Sbjct: 356 RDALAIVAEVMHQIKPEEIVGVAGKLSDAESMMALKDLLNKMGSNNIFCEGNGMHPNADL 415

Query: 418 RSGYIMNTSISGLEKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPATDLNYD 477
           RSGYIMNTSISGLEKAD FLLVGTQPRVEAAMVNARI KTV+A NAKVGY+GPA D NYD
Sbjct: 416 RSGYIMNTSISGLEKADAFLLVGTQPRVEAAMVNARIHKTVKATNAKVGYVGPAADFNYD 475

Query: 478 HQHLGTGPKTLLEIAEGRHPFFSAISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGN 537
           H+HLGT P+TL+EIAEGRHPF SA+ NAKNPVIIVGAG+F+R DKDA+F+ V+ IAK  N
Sbjct: 476 HEHLGTDPQTLVEIAEGRHPFSSALKNAKNPVIIVGAGVFDRDDKDAVFAAVDTIAKNNN 535

Query: 538 VIRPDWNGLNVLLLNAAQAAALDLGLVPESSNSIESAKFVYLMGADDVDLEKLPNDAFVV 597
           V+RPDWNGLNVLLLNAAQ AALDLGLVPES   IESAKFVYLMGADDV+L+KLP+DAFVV
Sbjct: 536 VVRPDWNGLNVLLLNAAQVAALDLGLVPESDKCIESAKFVYLMGADDVNLDKLPDDAFVV 595

Query: 598 YQGHHGDHGVYRANVILPASAFSEKEGTYENTEGCTQQTLPAVPTVGDARDDWKIIRALS 657
           YQGHHGD GVYRANVILPASAF+EKEG YENTEGC Q TLPAVPTVGDARDDWKI+RALS
Sbjct: 596 YQGHHGDRGVYRANVILPASAFTEKEGIYENTEGCAQITLPAVPTVGDARDDWKIVRALS 655

Query: 658 EVAGMRLPYDTIGGIRSRIRTVAPNLLHVDEREPATLGPSLKPEIKSEMDLTPFGSAVEN 717
           EVAG+ LPYD++G IRSRI+TVAPNLL VDER+PAT   SL+PE+  ++  TPF  AVEN
Sbjct: 656 EVAGVGLPYDSLGAIRSRIKTVAPNLLEVDERQPATFSTSLRPEVSQKVSATPFTPAVEN 715

Query: 718 FYMTDSITRASKTMAQCSAMLLK 740
           FYMTD+ITRASK MAQCSA+L K
Sbjct: 716 FYMTDAITRASKIMAQCSALLKK 738

Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone (By similarity). This is the largest subunit of complex I and it is a component of the iron-sulfur (IP) fragment of the enzyme. It may form part of the active site crevice where NADH is oxidized.
Solanum tuberosum (taxid: 4113)
EC: 1EC: .EC: 6EC: .EC: 9EC: 9EC: .EC: 3

>sp\|Q9FGI6\|NDUS1_ARATH NADH dehydrogenase [ubiquinone] iron-sulfur protein 1, mitochondrial OS=Arabidopsis thaliana GN=EMB1467 PE=1 SV=2	Back alignment and function description

>sp\|P28331\|NDUS1_HUMAN NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial OS=Homo sapiens GN=NDUFS1 PE=1 SV=3	Back alignment and function description

>sp\|P15690\|NDUS1_BOVIN NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial OS=Bos taurus GN=NDUFS1 PE=1 SV=1	Back alignment and function description

>sp\|Q0MQG2\|NDUS1_PANTR NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial OS=Pan troglodytes GN=NDUFS1 PE=2 SV=1	Back alignment and function description

>sp\|O21241\|NDUS1_RECAM NADH-ubiquinone oxidoreductase 75 kDa subunit OS=Reclinomonas americana GN=NAD11 PE=3 SV=1	Back alignment and function description

>sp\|Q0MQG1\|NDUS1_GORGO NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial OS=Gorilla gorilla gorilla GN=NDUFS1 PE=2 SV=1	Back alignment and function description

>sp\|P0CB68\|NDUS1_PONPY NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial OS=Pongo pygmaeus GN=NDUFS1 PE=2 SV=1	Back alignment and function description

>sp\|Q4R6K9\|NDUS1_MACFA NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial OS=Macaca fascicularis GN=NDUFS1 PE=2 SV=1	Back alignment and function description

>sp\|P0CB67\|NDUS1_PONAB NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial OS=Pongo abelii GN=NDUFS1 PE=2 SV=1	Back alignment and function description

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		741
TAIR\|locus:2169871		748	EMB1467 "AT5G37510" [Arabidops	1.0	0.990	0.779	7.29999778094e-318
UNIPROTKB\|Q8W317		747	OSJNBa0014G15.3 "cDNA clone:J0	0.929	0.922	0.815	4e-312
UNIPROTKB\|A8IVJ7		733	NUOS1 "NADH:ubiquinone oxidore	0.902	0.912	0.566	8.3e-209
UNIPROTKB\|P28331		727	NDUFS1 "NADH-ubiquinone oxidor	0.919	0.936	0.539	3.9e-195
UNIPROTKB\|F1SHD7		742	NDUFS1 "Uncharacterized protei	0.919	0.917	0.542	3.9e-195
UNIPROTKB\|E2R4F8		727	NDUFS1 "Uncharacterized protei	0.919	0.936	0.540	6.3e-195
UNIPROTKB\|E2RD75		739	NDUFS1 "Uncharacterized protei	0.919	0.921	0.540	6.3e-195
UNIPROTKB\|Q0MQG2		727	NDUFS1 "NADH-ubiquinone oxidor	0.919	0.936	0.538	8.1e-195
UNIPROTKB\|P15690		727	NDUFS1 "NADH-ubiquinone oxidor	0.919	0.936	0.542	1.3e-194
UNIPROTKB\|P0CB68		727	NDUFS1 "NADH-ubiquinone oxidor	0.919	0.936	0.536	1.7e-194

TAIR\|locus:2169871 EMB1467 "AT5G37510" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 3049 (1078.4 bits), Expect = 7.3e-318, P = 7.3e-318
 Identities = 581/745 (77%), Positives = 643/745 (86%)

Query:     1 MGLGLLASRAMRP----LKYSNSRVFIRSIVSKXXXXXXXXXXXXXXXXXXXXXXXRSPV 56
             MGLG+LASR +RP    L+   S  F+R+IVSK                       R+PV
Sbjct:     1 MGLGILASRTIRPASRLLQSQTSNFFLRTIVSKPELQSPESAAVSEPEPPTQILPPRNPV 60

Query:    57 GGARVHFPNPEDAIEVFVDGYPLKIPKGFTVLQACEVAGVDIPRFCYHSRLSIAGNCRMC 116
             GGARVHF NPEDAIEVFVDGY +K+PKGFTVLQACEVAGVDIPRFCYHSRLSIAGNCRMC
Sbjct:    61 GGARVHFSNPEDAIEVFVDGYAVKVPKGFTVLQACEVAGVDIPRFCYHSRLSIAGNCRMC 120

Query:   117 LVEVEKSPKPVASCAMPALPGMKIKTDTPLAKKAREGVMEFLLMNHPLDCPICDQGGECD 176
             LVEVEKSPKPVASCAMPALPGMKIKTDTP+AKKAREGVMEFLLMNHPLDCPICDQGGECD
Sbjct:   121 LVEVEKSPKPVASCAMPALPGMKIKTDTPIAKKAREGVMEFLLMNHPLDCPICDQGGECD 180

Query:   177 LQDQSMAFGSDRGRFTEMKRSVVDKNLGPLVKTVMTRCIQCTRCVRFATEVAGVQDLGML 236
             LQDQSMAFGSDRGRFTEMKRSVVDKNLGPLVKTVMTRCIQCTRCVRFA+EVAGVQDLG+L
Sbjct:   181 LQDQSMAFGSDRGRFTEMKRSVVDKNLGPLVKTVMTRCIQCTRCVRFASEVAGVQDLGIL 240

Query:   237 GRGSGEEIGTYVEKLMTSELSGNVIDICPVGALTSKPFAFKARNWELKGTETIDVTDAVG 296
             GRGSGEEIGTYVEKLMTSELSGNVIDICPVGALTSKPFAFKARNWELK TETIDV+DAVG
Sbjct:   241 GRGSGEEIGTYVEKLMTSELSGNVIDICPVGALTSKPFAFKARNWELKATETIDVSDAVG 300

Query:   297 SNIRIDSRGPEVMRILPRLNEDINEEWISDKTRFCYDGLKSQRLNDPMIRGADGRFKAVN 356
             SNIR+DSRGPEVMRI+PRLNEDINEEWISDKTRFCYDGLK QRL+DPMIR +DGRFKAV+
Sbjct:   301 SNIRVDSRGPEVMRIIPRLNEDINEEWISDKTRFCYDGLKRQRLSDPMIRDSDGRFKAVS 360

Query:   357 WRDALAVVAEVMLQAKPEEIVGIAGRLSDAESMMALKDFLNRMGSNNVWCEGTGAQSNAD 416
             WRDALAVV +++ Q KP+EIVG+AG+LSDAESMM LKDF+NRMGS+NVWCEGT A  +AD
Sbjct:   361 WRDALAVVGDIIHQVKPDEIVGVAGQLSDAESMMVLKDFVNRMGSDNVWCEGTAAGVDAD 420

Query:   417 LRSGYIMNTSISGLEKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPATDLNY 476
             LR  Y+MNTSISGLE AD FLL+GTQPRVEAAMVNARI KTVRA+NAKVGY+GP  + NY
Sbjct:   421 LRYSYLMNTSISGLENADLFLLIGTQPRVEAAMVNARICKTVRASNAKVGYVGPPAEFNY 480

Query:   477 DHQHLGTGPKTLLEIAEGRHPFFSAISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKG 536
             D +HLGTGP TL EIAEGRHPF +A+ NAKNP IIVGAGLF R DK+AI S+VE+IA+  
Sbjct:   481 DCKHLGTGPDTLKEIAEGRHPFCTALKNAKNPAIIVGAGLFNRTDKNAILSSVESIAQAN 540

Query:   537 NVIRPDWNXXXXXXXXXXXXXXXXXXXXPESSNSIESAKFVYLMGADDVDLEKLPNDAFV 596
             NV+RPDWN                     +S+ ++ESAKFVYLMGADDV+++K+P DAFV
Sbjct:   541 NVVRPDWNGLNFLLQYAAQAAALDLGLIQQSAKALESAKFVYLMGADDVNVDKIPKDAFV 600

Query:   597 VYQGHHGDHGVYRANVILPASAFSEKEGTYENTEGCTQQTLPAVPTVGDARDDWKIIRAL 656
             VYQGHHGD  VYRANVILPASAF+EKEGTYENTEG TQQT+PAVPTVGDARDDWKI+RAL
Sbjct:   601 VYQGHHGDKAVYRANVILPASAFTEKEGTYENTEGFTQQTVPAVPTVGDARDDWKIVRAL 660

Query:   657 SEVAGMRLPYDTIGGIRSRIRTVAPNLLHVDEREPATLGPSLKPEIKSEMDLTPFGSAVE 716
             SEV+G++LPY++I G+RSRI++VAPNL+H DEREPA  GPSLKPE K  M  TPF + VE
Sbjct:   661 SEVSGVKLPYNSIEGVRSRIKSVAPNLVHTDEREPAAFGPSLKPECKEAMSTTPFQTVVE 720

Query:   717 NFYMTDSITRASKTMAQCSAMLLKK 741
             NFYMT+SITRASK MAQCSA+LLKK
Sbjct:   721 NFYMTNSITRASKIMAQCSAVLLKK 745

GO:0003954 "NADH dehydrogenase activity" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=IEA;IBA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS

GO:0016020 "membrane" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016651 "oxidoreductase activity, acting on NAD(P)H" evidence=IEA

GO:0042773 "ATP synthesis coupled electron transport" evidence=IEA

GO:0045333 "cellular respiration" evidence=IBA

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0006979 "response to oxidative stress" evidence=IDA

GO:0009853 "photorespiration" evidence=RCA;TAS

GO:0031966 "mitochondrial membrane" evidence=IDA

GO:0045271 "respiratory chain complex I" evidence=IDA

GO:0005747 "mitochondrial respiratory chain complex I" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0009630 "gravitropism" evidence=RCA

GO:0051788 "response to misfolded protein" evidence=RCA

GO:0080129 "proteasome core complex assembly" evidence=RCA

UNIPROTKB\|Q8W317 OSJNBa0014G15.3 "cDNA clone:J023087M21, full insert sequence" [Oryza sativa Japonica Group (taxid:39947)]	Back alignment and assigned GO terms

UNIPROTKB\|A8IVJ7 NUOS1 "NADH:ubiquinone oxidoreductase 76 kDa subunit" [Chlamydomonas reinhardtii (taxid:3055)]	Back alignment and assigned GO terms

UNIPROTKB\|P28331 NDUFS1 "NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|F1SHD7 NDUFS1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|E2R4F8 NDUFS1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|E2RD75 NDUFS1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|Q0MQG2 NDUFS1 "NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial" [Pan troglodytes (taxid:9598)]	Back alignment and assigned GO terms

UNIPROTKB\|P15690 NDUFS1 "NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|P0CB68 NDUFS1 "NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial" [Pongo pygmaeus (taxid:9600)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q91VD9	NDUS1_MOUSE	1, ., 6, ., 9, 9, ., 3	0.5485	0.9122	0.9298	yes	no
Q0MQG2	NDUS1_PANTR	1, ., 6, ., 9, 9, ., 3	0.5485	0.9149	0.9325	yes	no
Q0MQG1	NDUS1_GORGO	1, ., 6, ., 9, 9, ., 3	0.5485	0.9149	0.9325	N/A	no
P24918	NDUS1_NEUCR	1, ., 6, ., 9, 9, ., 3	0.5270	0.8960	0.8924	N/A	no
Q1RKD2	NUOG_RICBR	1, ., 6, ., 9, 9, ., 5	0.4910	0.8852	0.9632	yes	no
Q68VV2	NUOG_RICTY	1, ., 6, ., 9, 9, ., 5	0.4796	0.8879	0.9748	yes	no
Q43644	NDUS1_SOLTU	1, ., 6, ., 9, 9, ., 3	0.8398	0.9919	0.9959	N/A	no
Q9FGI6	NDUS1_ARATH	1, ., 6, ., 9, 9, ., 3	0.8147	1.0	0.9906	yes	no
Q92G92	NUOG_RICCN	1, ., 6, ., 9, 9, ., 5	0.4977	0.8879	0.9806	yes	no
Q94511	NDUS1_DROME	1, ., 6, ., 9, 9, ., 3	0.5265	0.9284	0.9411	yes	no
Q34312	NDUS1_DICDI	1, ., 6, ., 9, 9, ., 3	0.3772	0.8380	0.9026	yes	no
P29915	NQO3_PARDE	1, ., 6, ., 9, 9, ., 5	0.4565	0.8704	0.9583	yes	no
Q4UK22	NUOG_RICFE	1, ., 6, ., 9, 9, ., 5	0.4947	0.8879	0.9806	yes	no
P28331	NDUS1_HUMAN	1, ., 6, ., 9, 9, ., 3	0.55	0.9149	0.9325	yes	no
Q4R6K9	NDUS1_MACFA	1, ., 6, ., 9, 9, ., 3	0.5485	0.9149	0.9325	N/A	no
Q9ZCF6	NUOG_RICPR	1, ., 6, ., 9, 9, ., 5	0.4872	0.8879	0.9748	yes	no
P0CB67	NDUS1_PONAB	1, ., 6, ., 9, 9, ., 3	0.5459	0.9203	0.9381	yes	no
O21241	NDUS1_RECAM	1, ., 6, ., 9, 9, ., 3	0.5377	0.8987	0.9638	N/A	no
P15690	NDUS1_BOVIN	1, ., 6, ., 9, 9, ., 3	0.5552	0.9190	0.9367	yes	no
Q66HF1	NDUS1_RAT	1, ., 6, ., 9, 9, ., 3	0.55	0.9149	0.9325	yes	no
P0CB68	NDUS1_PONPY	1, ., 6, ., 9, 9, ., 3	0.5471	0.9149	0.9325	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.6.5.3	0.994
3rd Layer	1.6.99	0.998
3rd Layer	1.6.99.3	0.994
3rd Layer	1.6.5	0.998

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		741
PRK09130		687	PRK09130, PRK09130, NADH dehydrogenase subunit G;	0.0
TIGR01973		603	TIGR01973, NuoG, NADH-quinone oxidoreductase, chai	0.0
COG1034		693	COG1034, NuoG, NADH dehydrogenase/NADH:ubiquinone	0.0
cd02773		375	cd02773, MopB_Res-Cmplx1_Nad11, MopB_Res_Cmplx1_Na	0.0
PRK09129		776	PRK09129, PRK09129, NADH dehydrogenase subunit G;	0.0
cd02768		386	cd02768, MopB_NADH-Q-OR-NuoG2, MopB_NADH-Q-OR-NuoG	1e-150
pfam00384		358	pfam00384, Molybdopterin, Molybdopterin oxidoreduc	1e-119
PRK07860		797	PRK07860, PRK07860, NADH dehydrogenase subunit G;	1e-103
cd02774		366	cd02774, MopB_Res-Cmplx1_Nad11-M, MopB_Res_Cmplx1_	9e-96
PRK08166		791	PRK08166, PRK08166, NADH dehydrogenase subunit G;	3e-89
cd00368		374	cd00368, Molybdopterin-Binding, Molybdopterin-Bind	7e-67
COG3383		978	COG3383, COG3383, Uncharacterized anaerobic dehydr	2e-60
PTZ00305		297	PTZ00305, PTZ00305, NADH:ubiquinone oxidoreductase	3e-59
cd02772		414	cd02772, MopB_NDH-1_NuoG2, MopB_NDH-1_NuoG2: The s	2e-40
PRK07569		234	PRK07569, PRK07569, bidirectional hydrogenase comp	1e-33
PRK08493		819	PRK08493, PRK08493, NADH dehydrogenase subunit G;	5e-33
cd02771		472	cd02771, MopB_NDH-1_NuoG2-N7, MopB_NDH-1_NuoG2-N7:	2e-32
cd02753		512	cd02753, MopB_Formate-Dh-H, Formate dehydrogenase	7e-28
TIGR01591		671	TIGR01591, Fdh-alpha, formate dehydrogenase, alpha	5e-18
pfam10588		41	pfam10588, NADH-G_4Fe-4S_3, NADH-ubiquinone oxidor	1e-17
pfam13510		82	pfam13510, Fer2_4, 2Fe-2S iron-sulfur cluster bind	1e-16
smart00929		41	smart00929, NADH-G_4Fe-4S_3, NADH-ubiquinone oxido	7e-16
PRK12814		652	PRK12814, PRK12814, putative NADPH-dependent gluta	1e-13
pfam09326		48	pfam09326, DUF1982, Domain of unknown function (DU	1e-12
COG3383		978	COG3383, COG3383, Uncharacterized anaerobic dehydr	1e-10
cd00207		84	cd00207, fer2, 2Fe-2S iron-sulfur cluster binding	1e-10
cd02754		565	cd02754, MopB_Nitrate-R-NapA-like, Nitrate reducta	1e-08
TIGR02512		374	TIGR02512, FeFe_hydrog_A, [FeFe] hydrogenase, grou	3e-08
COG0243		765	COG0243, BisC, Anaerobic dehydrogenases, typically	3e-07
cd02754		565	cd02754, MopB_Nitrate-R-NapA-like, Nitrate reducta	3e-05
pfam00111		77	pfam00111, Fer2, 2Fe-2S iron-sulfur cluster bindin	1e-04
COG0243		765	COG0243, BisC, Anaerobic dehydrogenases, typically	3e-04
cd02767		574	cd02767, MopB_ydeP, The MopB_ydeP CD includes a gr	3e-04
TIGR01701		743	TIGR01701, Fdhalpha-like, oxidoreductase alpha (mo	0.002
TIGR01706		830	TIGR01706, NAPA, periplasmic nitrate reductase, la	0.004

>gnl\|CDD\|236387 PRK09130, PRK09130, NADH dehydrogenase subunit G; Validated	Back alignment and domain information

 Score = 1050 bits (2718), Expect = 0.0
 Identities = 371/680 (54%), Positives = 481/680 (70%), Gaps = 12/680 (1%)

Query: 70  IEVFVDGYPLKIPKGFTVLQACEVAGVDIPRFCYHSRLSIAGNCRMCLVEVEKS-PKPVA 128
           +++ VDG  +++P G+T+LQACE AG +IPRFCYH RLSIAGNCRMCLVEV+   PKPVA
Sbjct: 2   VKLKVDGKEIEVPDGYTLLQACEAAGAEIPRFCYHERLSIAGNCRMCLVEVKGGPPKPVA 61

Query: 129 SCAMPALPGMKIKTDTPLAKKAREGVMEFLLMNHPLDCPICDQGGECDLQDQSMAFGSDR 188
           SCAMP   GM I T+TP+ KKAREGVMEFLL+NHPLDCPICDQGGECDLQDQ+MA+G D 
Sbjct: 62  SCAMPVGEGMVIFTNTPMVKKAREGVMEFLLINHPLDCPICDQGGECDLQDQAMAYGVDT 121

Query: 189 GRFTEMKRSVVDKNLGPLVKTVMTRCIQCTRCVRFATEVAGVQDLGMLGRGSGEEIGTYV 248
            R+ E KR+V DK +GPLVKTVMTRCI CTRCVRFATEVAGV +LG +GRG   EI TY+
Sbjct: 122 SRYHENKRAVEDKYMGPLVKTVMTRCIHCTRCVRFATEVAGVPELGAIGRGEDMEITTYL 181

Query: 249 EKLMTSELSGNVIDICPVGALTSKPFAFKARNWELKGTETIDVTDAVGSNIRIDSRGPEV 308
           E+ +TSELSGNVID+CPVGALTSKP+AF AR WELK TE+IDV DAVGSNIR+D+RG EV
Sbjct: 182 EQALTSELSGNVIDLCPVGALTSKPYAFTARPWELKKTESIDVMDAVGSNIRVDTRGREV 241

Query: 309 MRILPRLNEDINEEWISDKTRFCYDGLKSQRLNDPMIRGADGRFKAVNWRDALAVVAEVM 368
           MRILPR+NE++NEEWISDKTRF +DGLK QRL+ P +R  +G+    +W +A A +A  +
Sbjct: 242 MRILPRVNEEVNEEWISDKTRFSWDGLKRQRLDRPYVRK-NGKLVPASWDEAFAAIAAKI 300

Query: 369 LQAKPEEIVGIAGRLSDAESMMALKDFLNRMGSNNVWCEGTGAQSNADLRSGYIMNTSIS 428
                E+I  IAG L+D ESM ALKD + ++GS+N+ C   GA+ +  LR+ Y+ NT+I+
Sbjct: 301 KGTPGEKIAAIAGDLADVESMFALKDLMQKLGSSNLDCRQDGAKLDPSLRASYLFNTTIA 360

Query: 429 GLEKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPATDLNYDHQHLGTGPKTL 488
           G+E+AD  LL+G  PR EA ++NARIRK  RA   K+  IG   DL Y +++LG GP TL
Sbjct: 361 GIEEADAILLIGANPRFEAPVLNARIRKRWRAGGFKIAVIGEQADLTYPYEYLGAGPDTL 420

Query: 489 LEIAEGRHPFFSAISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNVIRPDWNGLNV 548
            ++A G+H F   +  AK P+IIVG G   R D  A+ +    +A+K   +R  WNG NV
Sbjct: 421 ADLASGKHEFADVLKAAKRPMIIVGQGALARADGAAVLALAAKLAEKVGAVRDGWNGFNV 480

Query: 549 LLLNAAQAAALDLGLVPESSN-------SIESAKFVYLMGADDVDLEKLPNDAFVVYQGH 601
           L   A++   LDLG VP              +   +YL+GAD++D+ K  + AFV+YQGH
Sbjct: 481 LHTAASRVGGLDLGFVPGEGGKDAAEMLESGALDVLYLLGADEIDISKGKS-AFVIYQGH 539

Query: 602 HGDHGVYRANVILPASAFSEKEGTYENTEGCTQQTLPAVPTVGDARDDWKIIRALSEVAG 661
           HGD G +RA+VILP +A++EK GTY NTEG  Q    AV   G+A++DW I+RALS+V G
Sbjct: 540 HGDRGAHRADVILPGAAYTEKSGTYVNTEGRVQLANRAVFPPGEAKEDWAILRALSDVLG 599

Query: 662 MRLPYDTIGGIRSRIRTVAPNLLHVDEREPATLGPSLKPEIKS--EMDLTPFGSAVENFY 719
             LPYD++  +R+++    P+   +D+  P+     L        ++   PF S V++FY
Sbjct: 600 KTLPYDSLAQLRAKLAAAYPHFAAIDQITPSKDAKDLAALASKKGKLSKAPFTSPVKDFY 659

Query: 720 MTDSITRASKTMAQCSAMLL 739
           +T+ I RAS TMA+CSA+  
Sbjct: 660 LTNPIARASATMAECSALAS 679

Length = 687

>gnl\|CDD\|233662 TIGR01973, NuoG, NADH-quinone oxidoreductase, chain G	Back alignment and domain information

>gnl\|CDD\|223965 COG1034, NuoG, NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) [Energy production and conversion]	Back alignment and domain information

>gnl\|CDD\|239174 cd02773, MopB_Res-Cmplx1_Nad11, MopB_Res_Cmplx1_Nad11: The second domain of the Nad11/75-kDa subunit of the NADH-quinone oxidoreductase/respiratory complex I/NADH dehydrogenase-1(NDH-1) of eukaryotes and the Nqo3/G subunit of alphaproteobacteria NDH-1	Back alignment and domain information

>gnl\|CDD\|236386 PRK09129, PRK09129, NADH dehydrogenase subunit G; Validated	Back alignment and domain information

>gnl\|CDD\|239169 cd02768, MopB_NADH-Q-OR-NuoG2, MopB_NADH-Q-OR-NuoG2: The NuoG/Nad11/75-kDa subunit (second domain) of the NADH-quinone oxidoreductase (NADH-Q-OR)/respiratory complex I/NADH dehydrogenase-1 (NDH-1)	Back alignment and domain information

>gnl\|CDD\|215888 pfam00384, Molybdopterin, Molybdopterin oxidoreductase	Back alignment and domain information

>gnl\|CDD\|236118 PRK07860, PRK07860, NADH dehydrogenase subunit G; Validated	Back alignment and domain information

>gnl\|CDD\|239175 cd02774, MopB_Res-Cmplx1_Nad11-M, MopB_Res_Cmplx1_Nad11_M: Mitochondrial-encoded NADH-quinone oxidoreductase/respiratory complex I, the second domain of the Nad11/75-kDa subunit of some protists	Back alignment and domain information

>gnl\|CDD\|236170 PRK08166, PRK08166, NADH dehydrogenase subunit G; Validated	Back alignment and domain information

>gnl\|CDD\|238218 cd00368, Molybdopterin-Binding, Molybdopterin-Binding (MopB) domain of the MopB superfamily of proteins, a large, diverse, heterogeneous superfamily of enzymes that, in general, bind molybdopterin as a cofactor	Back alignment and domain information

>gnl\|CDD\|225918 COG3383, COG3383, Uncharacterized anaerobic dehydrogenase [General function prediction only]	Back alignment and domain information

>gnl\|CDD\|140326 PTZ00305, PTZ00305, NADH:ubiquinone oxidoreductase; Provisional	Back alignment and domain information

>gnl\|CDD\|239173 cd02772, MopB_NDH-1_NuoG2, MopB_NDH-1_NuoG2: The second domain of the NuoG subunit of the NADH-quinone oxidoreductase/NADH dehydrogenase-1 (NDH-1), found in beta- and gammaproteobacteria	Back alignment and domain information

>gnl\|CDD\|181037 PRK07569, PRK07569, bidirectional hydrogenase complex protein HoxU; Validated	Back alignment and domain information

>gnl\|CDD\|236277 PRK08493, PRK08493, NADH dehydrogenase subunit G; Validated	Back alignment and domain information

>gnl\|CDD\|239172 cd02771, MopB_NDH-1_NuoG2-N7, MopB_NDH-1_NuoG2-N7: The second domain of the NuoG subunit (with a [4Fe-4S] cluster, N7) of the NADH-quinone oxidoreductase/NADH dehydrogenase-1 (NDH-1) found in various bacteria	Back alignment and domain information

>gnl\|CDD\|239154 cd02753, MopB_Formate-Dh-H, Formate dehydrogenase H (Formate-Dh-H) catalyzes the reversible oxidation of formate to CO2 with the release of a proton and two electrons	Back alignment and domain information

>gnl\|CDD\|130652 TIGR01591, Fdh-alpha, formate dehydrogenase, alpha subunit, archaeal-type	Back alignment and domain information

>gnl\|CDD\|204520 pfam10588, NADH-G_4Fe-4S_3, NADH-ubiquinone oxidoreductase-G iron-sulfur binding region	Back alignment and domain information

>gnl\|CDD\|205688 pfam13510, Fer2_4, 2Fe-2S iron-sulfur cluster binding domain	Back alignment and domain information

>gnl\|CDD\|214918 smart00929, NADH-G_4Fe-4S_3, NADH-ubiquinone oxidoreductase-G iron-sulfur binding region	Back alignment and domain information

>gnl\|CDD\|139246 PRK12814, PRK12814, putative NADPH-dependent glutamate synthase small subunit; Provisional	Back alignment and domain information

>gnl\|CDD\|204199 pfam09326, DUF1982, Domain of unknown function (DUF1982)	Back alignment and domain information

>gnl\|CDD\|225918 COG3383, COG3383, Uncharacterized anaerobic dehydrogenase [General function prediction only]	Back alignment and domain information

>gnl\|CDD\|238126 cd00207, fer2, 2Fe-2S iron-sulfur cluster binding domain	Back alignment and domain information

>gnl\|CDD\|239155 cd02754, MopB_Nitrate-R-NapA-like, Nitrate reductases, NapA (Nitrate-R-NapA), NasA, and NarB catalyze the reduction of nitrate to nitrite	Back alignment and domain information

>gnl\|CDD\|233903 TIGR02512, FeFe_hydrog_A, [FeFe] hydrogenase, group A	Back alignment and domain information

>gnl\|CDD\|223321 COG0243, BisC, Anaerobic dehydrogenases, typically selenocysteine-containing [Energy production and conversion]	Back alignment and domain information

>gnl\|CDD\|239155 cd02754, MopB_Nitrate-R-NapA-like, Nitrate reductases, NapA (Nitrate-R-NapA), NasA, and NarB catalyze the reduction of nitrate to nitrite	Back alignment and domain information

>gnl\|CDD\|215725 pfam00111, Fer2, 2Fe-2S iron-sulfur cluster binding domain	Back alignment and domain information

>gnl\|CDD\|223321 COG0243, BisC, Anaerobic dehydrogenases, typically selenocysteine-containing [Energy production and conversion]	Back alignment and domain information

>gnl\|CDD\|239168 cd02767, MopB_ydeP, The MopB_ydeP CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative molybdopterin cofactor binding site	Back alignment and domain information

>gnl\|CDD\|233538 TIGR01701, Fdhalpha-like, oxidoreductase alpha (molybdopterin) subunit	Back alignment and domain information

>gnl\|CDD\|130767 TIGR01706, NAPA, periplasmic nitrate reductase, large subunit	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		741
PRK09130		687	NADH dehydrogenase subunit G; Validated	100.0
KOG2282		708	consensus NADH-ubiquinone oxidoreductase, NDUFS1/7	100.0
COG3383		978	Uncharacterized anaerobic dehydrogenase [General f	100.0
TIGR01973		603	NuoG NADH-quinone oxidoreductase, chain G. This mo	100.0
PRK07860		797	NADH dehydrogenase subunit G; Validated	100.0
PRK09129		776	NADH dehydrogenase subunit G; Validated	100.0
PRK08166		847	NADH dehydrogenase subunit G; Validated	100.0
COG1034		693	NuoG NADH dehydrogenase/NADH:ubiquinone oxidoreduc	100.0
PRK08493		819	NADH dehydrogenase subunit G; Validated	100.0
cd02773		375	MopB_Res-Cmplx1_Nad11 MopB_Res_Cmplx1_Nad11: The s	100.0
cd02774		366	MopB_Res-Cmplx1_Nad11-M MopB_Res_Cmplx1_Nad11_M: M	100.0
cd02754		565	MopB_Nitrate-R-NapA-like Nitrate reductases, NapA	100.0
cd02752		649	MopB_Formate-Dh-Na-like Formate dehydrogenase N, a	100.0
cd02753		512	MopB_Formate-Dh-H Formate dehydrogenase H (Formate	100.0
cd02766		501	MopB_3 The MopB_3 CD includes a group of related u	100.0
TIGR03479		912	DMSO_red_II_alp DMSO reductase family type II enzy	100.0
TIGR01553		1009	formate-DH-alph formate dehydrogenase, alpha subun	100.0
TIGR01591		671	Fdh-alpha formate dehydrogenase, alpha subunit, ar	100.0
cd02750		461	MopB_Nitrate-R-NarG-like Respiratory nitrate reduc	100.0
cd02771		472	MopB_NDH-1_NuoG2-N7 MopB_NDH-1_NuoG2-N7: The secon	100.0
cd02768		386	MopB_NADH-Q-OR-NuoG2 MopB_NADH-Q-OR-NuoG2: The Nuo	100.0
cd02762		539	MopB_1 The MopB_1 CD includes a group of related u	100.0
cd02759		477	MopB_Acetylene-hydratase The MopB_Acetylene-hydrat	100.0
cd02772		414	MopB_NDH-1_NuoG2 MopB_NDH-1_NuoG2: The second doma	100.0
cd02755		454	MopB_Thiosulfate-R-like The MopB_Thiosulfate-R-lik	100.0
TIGR01706		830	NAPA periplasmic nitrate reductase, large subunit.	100.0
PRK13532		830	nitrate reductase catalytic subunit; Provisional	100.0
cd02765		567	MopB_4 The MopB_4 CD includes a group of related u	100.0
cd02770		617	MopB_DmsA-EC This CD (MopB_DmsA-EC) includes the D	100.0
cd02763		679	MopB_2 The MopB_2 CD includes a group of related u	100.0
cd02764		524	MopB_PHLH The MopB_PHLH CD includes a group of rel	100.0
PRK15488		759	thiosulfate reductase PhsA; Provisional	100.0
cd02751		609	MopB_DMSOR-like The MopB_DMSOR-like CD contains di	100.0
cd02757		523	MopB_Arsenate-R This CD includes the respiratory a	100.0
PTZ00305		297	NADH:ubiquinone oxidoreductase; Provisional	100.0
cd00368		374	Molybdopterin-Binding Molybdopterin-Binding (MopB)	100.0
cd02756		676	MopB_Arsenite-Ox Arsenite oxidase (Arsenite-Ox) ox	100.0
cd02758		735	MopB_Tetrathionate-Ra The MopB_Tetrathionate-Ra CD	100.0
PRK14990		814	anaerobic dimethyl sulfoxide reductase subunit A;	100.0
TIGR02166		797	dmsA_ynfE anaerobic dimethyl sulfoxide reductase,	100.0
cd02760		760	MopB_Phenylacetyl-CoA-OR The MopB_Phenylacetyl-CoA	100.0
cd02769		609	MopB_DMSOR-BSOR-TMAOR The MopB_DMSOR-BSOR-TMAOR CD	100.0
TIGR02693		806	arsenite_ox_L arsenite oxidase, large subunit. Thi	100.0
COG0243		765	BisC Anaerobic dehydrogenases, typically selenocys	100.0
PRK14991		1031	tetrathionate reductase subunit A; Provisional	100.0
TIGR03129		421	one_C_dehyd_B formylmethanofuran dehydrogenase sub	100.0
PRK09939		759	putative oxidoreductase; Provisional	100.0
TIGR00509		770	bisC_fam molybdopterin guanine dinucleotide-contai	100.0
TIGR01701		743	Fdhalpha-like oxidoreductase alpha (molybdopterin)	100.0
TIGR02164		822	torA trimethylamine-N-oxide reductase TorA. This v	100.0
cd02761		415	MopB_FmdB-FwdB The MopB_FmdB-FwdB CD contains the	100.0
cd02767		574	MopB_ydeP The MopB_ydeP CD includes a group of rel	100.0
TIGR01580		1235	narG respiratory nitrate reductase, alpha subunit.	100.0
PRK15102		825	trimethylamine N-oxide reductase I catalytic subun	100.0
PF00384		432	Molybdopterin: Molybdopterin oxidoreductase; Inter	100.0
PRK07569		234	bidirectional hydrogenase complex protein HoxU; Va	100.0
COG1029		429	FwdB Formylmethanofuran dehydrogenase subunit B [E	100.0
COG5013		1227	NarG Nitrate reductase alpha subunit [Energy produ	99.96
PRK12814		652	putative NADPH-dependent glutamate synthase small	99.85
PF13510		82	Fer2_4: 2Fe-2S iron-sulfur cluster binding domain;	99.84
TIGR00384		220	dhsB succinate dehydrogenase and fumarate reductas	99.67
PRK12577		329	succinate dehydrogenase iron-sulfur subunit; Provi	99.62
PRK12576		279	succinate dehydrogenase iron-sulfur subunit; Provi	99.6
PRK05950		232	sdhB succinate dehydrogenase iron-sulfur subunit;	99.59
PF10588		41	NADH-G_4Fe-4S_3: NADH-ubiquinone oxidoreductase-G	99.47
PRK12385		244	fumarate reductase iron-sulfur subunit; Provisiona	99.45
PLN00129		276	succinate dehydrogenase [ubiquinone] iron-sulfur s	99.44
PRK06259		486	succinate dehydrogenase/fumarate reductase iron-su	99.43
PRK07570		250	succinate dehydrogenase/fumarate reductase iron-su	99.42
PRK08640		249	sdhB succinate dehydrogenase iron-sulfur subunit;	99.41
PRK13552		239	frdB fumarate reductase iron-sulfur subunit; Provi	99.4
PRK08764		135	ferredoxin; Provisional	99.39
PRK12386		251	fumarate reductase iron-sulfur subunit; Provisiona	99.39
PRK05113		191	electron transport complex protein RnfB; Provision	99.37
COG0479		234	FrdB Succinate dehydrogenase/fumarate reductase, F	99.36
PRK12575		235	succinate dehydrogenase iron-sulfur subunit; Provi	99.35
PF04879		55	Molybdop_Fe4S4: Molybdopterin oxidoreductase Fe4S4	99.29
TIGR01944		165	rnfB electron transport complex, RnfABCDGE type, B	99.21
COG1143		172	NuoI Formate hydrogenlyase subunit 6/NADH:ubiquino	99.12
PRK06991		270	ferredoxin; Provisional	99.12
PRK12814		652	putative NADPH-dependent glutamate synthase small	98.98
cd00207		84	fer2 2Fe-2S iron-sulfur cluster binding domain. Ir	98.91
KOG3256		212	consensus NADH:ubiquinone oxidoreductase, NDUFS8/2	98.91
PF14697		59	Fer4_21: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE	98.89
TIGR02008		97	fdx_plant ferredoxin [2Fe-2S]. This model represen	98.82
PF09326		49	DUF1982: Domain of unknown function (DUF1982); Int	98.77
PF13187		55	Fer4_9: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_	98.74
PRK10713		84	2Fe-2S ferredoxin YfaE; Provisional	98.69
COG2080		156	CoxS Aerobic-type carbon monoxide dehydrogenase, s	98.68
TIGR00403		183	ndhI NADH-plastoquinone oxidoreductase subunit I p	98.67
PRK11433		217	aldehyde oxidoreductase 2Fe-2S subunit; Provisiona	98.66
TIGR02936		91	fdxN_nitrog ferredoxin III, nif-specific. Members	98.65
PRK08222		181	hydrogenase 4 subunit H; Validated	98.63
PRK12387		180	formate hydrogenlyase complex iron-sulfur subunit;	98.63
CHL00134		99	petF ferredoxin; Validated	98.61
PF12838		52	Fer4_7: 4Fe-4S dicluster domain; InterPro: IPR0014	98.6
PRK08348		120	NADH-plastoquinone oxidoreductase subunit; Provisi	98.6
PTZ00038		191	ferredoxin; Provisional	98.57
PRK05888		164	NADH dehydrogenase subunit I; Provisional	98.54
TIGR02007		110	fdx_isc ferredoxin, 2Fe-2S type, ISC system. This	98.53
TIGR03198		151	pucE xanthine dehydrogenase E subunit. This gene h	98.52
PRK09908		159	xanthine dehydrogenase subunit XdhC; Provisional	98.52
PLN02593		117	adrenodoxin-like ferredoxin protein	98.5
PLN00071		81	photosystem I subunit VII; Provisional	98.48
TIGR03193		148	4hydroxCoAred 4-hydroxybenzoyl-CoA reductase, gamm	98.48
PF00111		78	Fer2: 2Fe-2S iron-sulfur cluster binding domain; I	98.48
PLN03136		148	Ferredoxin; Provisional	98.47
CHL00014		167	ndhI NADH dehydrogenase subunit I	98.43
CHL00065		81	psaC photosystem I subunit VII	98.4
TIGR03048		80	PS_I_psaC photosystem I iron-sulfur protein PsaC.	98.4
PRK06273		165	ferredoxin; Provisional	98.37
PF13237		52	Fer4_10: 4Fe-4S dicluster domain; PDB: 2FGO_A.	98.36
COG2878		198	Predicted NADH:ubiquinone oxidoreductase, subunit	98.35
TIGR02512		374	Fe_only_hydrog hydrogenases, Fe-only. This model d	98.34
PRK05713		312	hypothetical protein; Provisional	98.32
TIGR01971		122	NuoI NADH-quinone oxidoreductase, chain I. This mo	98.32
PRK02651		81	photosystem I subunit VII; Provisional	98.31
PTZ00490		143	Ferredoxin superfamily; Provisional	98.29
COG2871		410	NqrF Na+-transporting NADH:ubiquinone oxidoreducta	98.28
PRK10882		328	hydrogenase 2 protein HybA; Provisional	98.26
TIGR01372		985	soxA sarcosine oxidase, alpha subunit family, hete	98.25
PRK09626		103	oorD 2-oxoglutarate-acceptor oxidoreductase subuni	98.25
PRK09624		105	porD pyuvate ferredoxin oxidoreductase subunit del	98.24
COG0633		102	Fdx Ferredoxin [Energy production and conversion]	98.21
PRK09623		105	vorD 2-ketoisovalerate ferredoxin oxidoreductase s	98.21
COG1146		68	Ferredoxin [Energy production and conversion]	98.2
PRK09625		133	porD pyruvate flavodoxin oxidoreductase subunit de	98.2
TIGR00402		101	napF ferredoxin-type protein NapF. The gene codes	98.18
TIGR01941		405	nqrF NADH:ubiquinone oxidoreductase, Na(+)-translo	98.17
PRK05464		409	Na(+)-translocating NADH-quinone reductase subunit	98.17
PF13085		110	Fer2_3: 2Fe-2S iron-sulfur cluster binding domain;	98.15
PRK07609		339	CDP-6-deoxy-delta-3,4-glucoseen reductase; Validat	98.15
COG1144		91	Pyruvate:ferredoxin oxidoreductase and related 2-o	98.13
PRK10194		163	ferredoxin-type protein; Provisional	98.11
PRK14028		312	pyruvate ferredoxin oxidoreductase subunit gamma/d	98.07
TIGR02179		78	PorD_KorD 2-oxoacid:acceptor oxidoreductase, delta	98.04
PRK13984		604	putative oxidoreductase; Provisional	98.02
COG1145		99	NapF Ferredoxin [Energy production and conversion]	98.01
PRK11872		340	antC anthranilate dioxygenase reductase; Provision	98.0
TIGR02912		314	sulfite_red_C sulfite reductase, subunit C. Member	97.97
TIGR02494		295	PFLE_PFLC glycyl-radical enzyme activating protein	97.97
TIGR02060		132	aprB adenosine phosphosulphate reductase, beta sub	97.94
PRK09477		271	napH quinol dehydrogenase membrane component; Prov	97.92
TIGR02163		255	napH_ ferredoxin-type protein, NapH/MauN family. M	97.9
TIGR03224		411	benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA p	97.89
TIGR02176		1165	pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxid	97.88
COG3894		614	Uncharacterized metal-binding protein [General fun	97.86
TIGR03311		848	Se_dep_Molyb_1 selenium-dependent molybdenum hydro	97.85
PRK10684		332	HCP oxidoreductase, NADH-dependent; Provisional	97.82
PRK09800		956	putative hypoxanthine oxidase; Provisional	97.82
COG1149		284	MinD superfamily P-loop ATPase containing an inser	97.79
PRK07118		280	ferredoxin; Validated	97.78
PRK08318		420	dihydropyrimidine dehydrogenase subunit B; Validat	97.77
PF13183		57	Fer4_8: 4Fe-4S dicluster domain; PDB: 2BS4_B 1E7P_	97.76
TIGR02700		234	flavo_MJ0208 archaeoflavoprotein, MJ0208 family. T	97.75
TIGR00397		213	mauM_napG MauM/NapG family ferredoxin-type protein	97.73
PF13247		98	Fer4_11: 4Fe-4S dicluster domain; PDB: 2VPY_F 2VPX	97.69
TIGR01660		492	narH nitrate reductase, beta subunit. The Nitrate	97.69
PRK12769		654	putative oxidoreductase Fe-S binding subunit; Revi	97.67
PRK09898		208	hypothetical protein; Provisional	97.62
PRK09476		254	napG quinol dehydrogenase periplasmic component; P	97.62
PF12837		24	Fer4_6: 4Fe-4S binding domain; InterPro: IPR001450	97.6
TIGR02160		352	PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase,	97.59
PRK10194		163	ferredoxin-type protein; Provisional	97.54
TIGR03478		321	DMSO_red_II_bet DMSO reductase family type II enzy	97.53
TIGR03313		951	Se_sel_red_Mo probable selenate reductase, molybde	97.52
PRK07118		280	ferredoxin; Validated	97.52
TIGR02963		467	xanthine_xdhA xanthine dehydrogenase, small subuni	97.51
PRK10330		181	formate dehydrogenase-H ferredoxin subunit; Provis	97.49
TIGR03478		321	DMSO_red_II_bet DMSO reductase family type II enzy	97.4
PF12797		22	Fer4_2: 4Fe-4S binding domain; InterPro: IPR001450	97.39
PRK09476		254	napG quinol dehydrogenase periplasmic component; P	97.39
COG0437		203	HybA Fe-S-cluster-containing hydrogenase component	97.38
PRK14993		244	tetrathionate reductase subunit B; Provisional	97.37
TIGR03149		225	cyt_nit_nrfC cytochrome c nitrite reductase, Fe-S	97.37
COG2768		354	Uncharacterized Fe-S center protein [General funct	97.31
COG2221		317	DsrA Dissimilatory sulfite reductase (desulfovirid	97.29
PF13484		67	Fer4_16: 4Fe-4S double cluster binding domain	97.29
TIGR03287		391	methan_mark_16 putative methanogenesis marker 16 m	97.27
TIGR01582		283	FDH-beta formate dehydrogenase, beta subunit, Fe-S	97.27
COG1142		165	HycB Fe-S-cluster-containing hydrogenase component	97.24
PRK10330		181	formate dehydrogenase-H ferredoxin subunit; Provis	97.22
TIGR03149		225	cyt_nit_nrfC cytochrome c nitrite reductase, Fe-S	97.2
TIGR02745		434	ccoG_rdxA_fixG cytochrome c oxidase accessory prot	97.15
TIGR00397		213	mauM_napG MauM/NapG family ferredoxin-type protein	97.15
PRK10882		328	hydrogenase 2 protein HybA; Provisional	97.14
TIGR02951		161	DMSO_dmsB DMSO reductase, iron-sulfur subunit. Thi	97.13
PRK00783		263	DNA-directed RNA polymerase subunit D; Provisional	97.12
TIGR02951		161	DMSO_dmsB DMSO reductase, iron-sulfur subunit. Thi	97.12
PRK12809		639	putative oxidoreductase Fe-S binding subunit; Revi	97.11
PRK12771		564	putative glutamate synthase (NADPH) small subunit;	97.11
PRK13795		636	hypothetical protein; Provisional	97.11
TIGR02969		1330	mam_aldehyde_ox aldehyde oxidase. Members of this	97.08
COG1148		622	HdrA Heterodisulfide reductase, subunit A and rela	97.08
cd07030		259	RNAP_D D subunit of Archaeal RNA polymerase. The D	97.06
TIGR00273		432	iron-sulfur cluster-binding protein. Members of th	97.05
TIGR03336		595	IOR_alpha indolepyruvate ferredoxin oxidoreductase	97.04
PRK14993		244	tetrathionate reductase subunit B; Provisional	97.03
PF00037		24	Fer4: 4Fe-4S binding domain; InterPro: IPR001450 T	97.02
PRK05035		695	electron transport complex protein RnfC; Provision	97.02
PF13370		58	Fer4_13: 4Fe-4S single cluster domain; PDB: 1FXR_A	97.02
TIGR00314		784	cdhA CO dehydrogenase/acetyl-CoA synthase complex,	97.0
PRK09326		341	F420H2 dehydrogenase subunit F; Provisional	96.96
PRK00941		781	acetyl-CoA decarbonylase/synthase complex subunit	96.96
PF12798		15	Fer4_3: 4Fe-4S binding domain; InterPro: IPR001450	96.94
COG1139		459	Uncharacterized conserved protein containing a fer	96.94
cd01916		731	ACS_1 Acetyl-CoA synthase (ACS), also known as ace	96.92
PRK12769		654	putative oxidoreductase Fe-S binding subunit; Revi	96.9
TIGR01582		283	FDH-beta formate dehydrogenase, beta subunit, Fe-S	96.88
PRK09853		1019	putative selenate reductase subunit YgfK; Provisio	96.88
COG1142		165	HycB Fe-S-cluster-containing hydrogenase component	96.86
PRK09898		208	hypothetical protein; Provisional	96.85
TIGR03315		1012	Se_ygfK putative selenate reductase, YgfK subunit.	96.84
TIGR01660		492	narH nitrate reductase, beta subunit. The Nitrate	96.83
PLN00192		1344	aldehyde oxidase	96.81
PF13459		65	Fer4_15: 4Fe-4S single cluster domain	96.79
COG4231		640	Indolepyruvate ferredoxin oxidoreductase, alpha an	96.75
PRK05659		66	sulfur carrier protein ThiS; Validated	96.75
PF00037		24	Fer4: 4Fe-4S binding domain; InterPro: IPR001450 T	96.72
TIGR03294		228	FrhG coenzyme F420 hydrogenase, subunit gamma. Thi	96.72
COG1148		622	HdrA Heterodisulfide reductase, subunit A and rela	96.71
COG0437		203	HybA Fe-S-cluster-containing hydrogenase component	96.69
TIGR03290		144	CoB_CoM_SS_C CoB--CoM heterodisulfide reductase, s	96.65
PRK12809		639	putative oxidoreductase Fe-S binding subunit; Revi	96.58
PF13247		98	Fer4_11: 4Fe-4S dicluster domain; PDB: 2VPY_F 2VPX	96.56
TIGR01945		435	rnfC electron transport complex, RnfABCDGE type, C	96.5
COG1141		68	Fer Ferredoxin [Energy production and conversion]	96.21
PF12837		24	Fer4_6: 4Fe-4S binding domain; InterPro: IPR001450	96.2
COG1245		591	Predicted ATPase, RNase L inhibitor (RLI) homolog	96.19
PRK11168		396	glpC sn-glycerol-3-phosphate dehydrogenase subunit	96.06
TIGR02066		341	dsrB sulfite reductase, dissimilatory-type beta su	95.93
TIGR03379		397	glycerol3P_GlpC glycerol-3-phosphate dehydrogenase	95.67
COG4656		529	RnfC Predicted NADH:ubiquinone oxidoreductase, sub	95.66
PRK15055		344	anaerobic sulfite reductase subunit A; Provisional	95.54
KOG3309		159	consensus Ferredoxin [Energy production and conver	95.43
TIGR00276		282	iron-sulfur cluster binding protein, putative. Thi	95.42
PRK13409		590	putative ATPase RIL; Provisional	95.3
COG1152		772	CdhA CO dehydrogenase/acetyl-CoA synthase alpha su	95.28
PF12838		52	Fer4_7: 4Fe-4S dicluster domain; InterPro: IPR0014	95.18
COG1029		429	FwdB Formylmethanofuran dehydrogenase subunit B [E	95.05
PRK11274		407	glcF glycolate oxidase iron-sulfur subunit; Provis	95.05
PRK07440		70	hypothetical protein; Provisional	94.97
PF12800		17	Fer4_4: 4Fe-4S binding domain; InterPro: IPR001450	94.95
COG2221		317	DsrA Dissimilatory sulfite reductase (desulfovirid	94.78
PF13534		61	Fer4_17: 4Fe-4S dicluster domain; PDB: 1ZOY_B 3AE9	94.39
PRK05863		65	sulfur carrier protein ThiS; Provisional	94.38
PF12798		15	Fer4_3: 4Fe-4S binding domain; InterPro: IPR001450	94.17
PRK08053		66	sulfur carrier protein ThiS; Provisional	94.14
TIGR02486		314	RDH reductive dehalogenase. This model represents	94.12
PF13484		67	Fer4_16: 4Fe-4S double cluster binding domain	93.86
TIGR02910		334	sulfite_red_A sulfite reductase, subunit A. Member	93.82
COG0247		388	GlpC Fe-S oxidoreductase [Energy production and co	93.68
PRK06083		84	sulfur carrier protein ThiS; Provisional	93.57
COG1143		172	NuoI Formate hydrogenlyase subunit 6/NADH:ubiquino	93.56
TIGR00315		162	cdhB CO dehydrogenase/acetyl-CoA synthase complex,	93.52
PRK00945		171	acetyl-CoA decarbonylase/synthase complex subunit	93.04
TIGR01683		64	thiS thiamine biosynthesis protein ThiS. This mode	93.03
COG3862		117	Uncharacterized protein with conserved CXXC pairs	92.96
PF13237		52	Fer4_10: 4Fe-4S dicluster domain; PDB: 2FGO_A.	92.67
PRK15449		95	ferredoxin-like protein FixX; Provisional	92.5
PF13187		55	Fer4_9: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_	92.35
PF12800		17	Fer4_4: 4Fe-4S binding domain; InterPro: IPR001450	92.19
TIGR02484		372	CitB CitB domain protein. CobZ is essential for co	92.17
TIGR02163		255	napH_ ferredoxin-type protein, NapH/MauN family. M	92.16
PRK05352		448	Na(+)-translocating NADH-quinone reductase subunit	92.11
COG1600		337	Uncharacterized Fe-S protein [Energy production an	92.0
PRK08364		70	sulfur carrier protein ThiS; Provisional	92.0
PRK13984		604	putative oxidoreductase; Provisional	91.95
TIGR01936		447	nqrA NADH:ubiquinone oxidoreductase, Na(+)-translo	91.74
cd00565		65	ThiS ThiaminS ubiquitin-like sulfur carrier protei	91.53
KOG3256		212	consensus NADH:ubiquinone oxidoreductase, NDUFS8/2	91.52
COG2104		68	ThiS Sulfur transfer protein involved in thiamine	91.38
COG1150		195	HdrC Heterodisulfide reductase, subunit C [Energy	91.14
PLN02906		1319	xanthine dehydrogenase	90.89
PF13746		69	Fer4_18: 4Fe-4S dicluster domain	90.22
PF14697		59	Fer4_21: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE	90.18
PRK08222		181	hydrogenase 4 subunit H; Validated	89.98
PRK12387		180	formate hydrogenlyase complex iron-sulfur subunit;	89.91
PRK15033		389	tricarballylate utilization protein B; Provisional	89.84
KOG0430		1257	consensus Xanthine dehydrogenase [Nucleotide trans	89.41
COG1145		99	NapF Ferredoxin [Energy production and conversion]	89.29
TIGR02064		402	dsrA sulfite reductase, dissimilatory-type alpha s	88.65
PRK13030		1159	2-oxoacid ferredoxin oxidoreductase; Provisional	88.59
PRK09626		103	oorD 2-oxoglutarate-acceptor oxidoreductase subuni	88.57
PRK08348		120	NADH-plastoquinone oxidoreductase subunit; Provisi	88.5
PRK09477		271	napH quinol dehydrogenase membrane component; Prov	88.14
TIGR03048		80	PS_I_psaC photosystem I iron-sulfur protein PsaC.	87.86
PRK06944		65	sulfur carrier protein ThiS; Provisional	87.51
PRK07696		67	sulfur carrier protein ThiS; Provisional	87.34
KOG3049		288	consensus Succinate dehydrogenase, Fe-S protein su	87.19
PF13746		69	Fer4_18: 4Fe-4S dicluster domain	86.85
PRK15449		95	ferredoxin-like protein FixX; Provisional	86.84
KOG0063		592	consensus RNAse L inhibitor, ABC superfamily [RNA	86.57
COG2440		99	FixX Ferredoxin-like protein [Energy production an	86.45
PRK05113		191	electron transport complex protein RnfB; Provision	86.45
TIGR02745		434	ccoG_rdxA_fixG cytochrome c oxidase accessory prot	85.89
PRK09193		1165	indolepyruvate ferredoxin oxidoreductase; Validate	85.87
PLN00071		81	photosystem I subunit VII; Provisional	85.72
PRK06488		65	sulfur carrier protein ThiS; Validated	85.71
PRK13029		1186	2-oxoacid ferredoxin oxidoreductase; Provisional	85.59
COG1149		284	MinD superfamily P-loop ATPase containing an inser	85.5
PRK06273		165	ferredoxin; Provisional	85.41
PRK06437		67	hypothetical protein; Provisional	85.39
TIGR02936		91	fdxN_nitrog ferredoxin III, nif-specific. Members	85.27
PRK06991		270	ferredoxin; Provisional	84.66
PRK02651		81	photosystem I subunit VII; Provisional	84.55
TIGR01971		122	NuoI NADH-quinone oxidoreductase, chain I. This mo	84.55
TIGR02486		314	RDH reductive dehalogenase. This model represents	84.53
COG3383		978	Uncharacterized anaerobic dehydrogenase [General f	84.52
PRK05888		164	NADH dehydrogenase subunit I; Provisional	84.46
COG0348		386	NapH Polyferredoxin [Energy production and convers	84.07
COG4630		493	XdhA Xanthine dehydrogenase, iron-sulfur cluster a	83.39
TIGR02066		341	dsrB sulfite reductase, dissimilatory-type beta su	83.1
CHL00065		81	psaC photosystem I subunit VII	82.9
TIGR00276		282	iron-sulfur cluster binding protein, putative. Thi	82.88
COG1035		332	FrhB Coenzyme F420-reducing hydrogenase, beta subu	82.81
TIGR02179		78	PorD_KorD 2-oxoacid:acceptor oxidoreductase, delta	82.66
PRK09853		1019	putative selenate reductase subunit YgfK; Provisio	82.15
PRK09625		133	porD pyruvate flavodoxin oxidoreductase subunit de	81.4
TIGR01944		165	rnfB electron transport complex, RnfABCDGE type, B	80.97
TIGR02494		295	PFLE_PFLC glycyl-radical enzyme activating protein	80.67
TIGR00403		183	ndhI NADH-plastoquinone oxidoreductase subunit I p	80.67
PRK09624		105	porD pyuvate ferredoxin oxidoreductase subunit del	80.63
COG1146		68	Ferredoxin [Energy production and conversion]	80.28

>PRK09130 NADH dehydrogenase subunit G; Validated	Back alignment and domain information

Probab=100.00  E-value=3.3e-151  Score=1318.41  Aligned_cols=670  Identities=56%  Similarity=0.964  Sum_probs=620.4

Q ss_pred             cEEEEECCEEEEeCCCChHHHHHHHCCCCccccccCCCCCCccccCccEEEEcCC-CcccccccCCCCCCCEEEccchhH
Q 004627           69 AIEVFVDGYPLKIPKGFTVLQACEVAGVDIPRFCYHSRLSIAGNCRMCLVEVEKS-PKPVASCAMPALPGMKIKTDTPLA  147 (741)
Q Consensus        69 ~v~~~idg~~~~~~~g~tvl~a~~~~g~~ip~~C~~~~l~~~G~C~~C~V~v~~~-~~~~~aC~~~v~~gm~v~t~~~~~  147 (741)
                      ||+|+|||++|+|++|+||||||+++||+||+||||++|+++|+||||+|||+|. +|+++||+|||++||+|+|+++++
T Consensus         1 m~~~~Idg~~v~v~~g~til~a~~~~gi~IP~lCy~~~l~~~g~Cr~ClVev~~~~~~~~~sC~~~v~~gm~v~T~s~~v   80 (687)
T PRK09130          1 MVKLKVDGKEIEVPDGYTLLQACEAAGAEIPRFCYHERLSIAGNCRMCLVEVKGGPPKPVASCAMPVGEGMVIFTNTPMV   80 (687)
T ss_pred             CeEEEECCEEEEeCCCCHHHHHHHHcCCCcCcccCCCCCCCCCCCCCCEEEECCCCCCcccccCCCCCCCCEEEeCCHHH
Confidence            4899999999999999999999999999999999999999999999999999997 899999999999999999999999


Q ss_pred             HHHHhHHHHHHHhhCCCCCCCcCCCCCChhhhHHhHhCCCCCcccccccccccccCcccccccCCcccccchhHHHhhhh
Q 004627          148 KKAREGVMEFLLMNHPLDCPICDQGGECDLQDQSMAFGSDRGRFTEMKRSVVDKNLGPLVKTVMTRCIQCTRCVRFATEV  227 (741)
Q Consensus       148 ~~~r~~~le~~l~~hp~dC~~C~~~gec~lq~~~~~~g~~~~~~~~~~~~~~~~~~~p~i~~d~~rCI~C~rCvr~C~~i  227 (741)
                      +++|+.+|||||+|||+|||+|||+|||+|||+++.||++.+||.+.|+.+++++.+|+|.+|++|||+||||||||.|+
T Consensus        81 ~~~r~~~le~ll~~Hp~dC~~C~~~g~C~Lq~~~~~~g~~~~r~~~~~~~~~~~~~~p~i~~~~~rCI~C~rCvr~c~ev  160 (687)
T PRK09130         81 KKAREGVMEFLLINHPLDCPICDQGGECDLQDQAMAYGVDTSRYHENKRAVEDKYMGPLVKTVMTRCIHCTRCVRFATEV  160 (687)
T ss_pred             HHHHHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHHhCCCCCCCCccccccCcCCCCCcEEEecccCCcccHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999999999998899999999999999999999999999


Q ss_pred             cCcceeeeecCCCCceeeecccCCccccccccccccccCcccccccccccccccceeeeeecCCCCCCCCCceEeeeCCE
Q 004627          228 AGVQDLGMLGRGSGEEIGTYVEKLMTSELSGNVIDICPVGALTSKPFAFKARNWELKGTETIDVTDAVGSNIRIDSRGPE  307 (741)
Q Consensus       228 ~g~~~l~~~~r~~~~~i~~~~~~~~~c~~cg~cv~vCP~gAl~~~~~~~~~r~wel~~~~siC~~C~~gC~i~v~vrdg~  307 (741)
                      +|..+|++.+||.+++|.++.+++++|++||+|+++||||||++|+|+|++||||+++++|+|++|++||+|.|+++||+
T Consensus       161 ~g~~~l~~~~rg~~~~i~~~~~~~~~~~~~G~cv~~CPvgAl~~k~~~~~~r~w~l~~~~sic~~c~vGC~i~v~~r~~~  240 (687)
T PRK09130        161 AGVPELGAIGRGEDMEITTYLEQALTSELSGNVIDLCPVGALTSKPYAFTARPWELKKTESIDVMDAVGSNIRVDTRGRE  240 (687)
T ss_pred             cCCceEEeeecCCCCEEccCCCCCccccccccHHhhCCCccccccccccccCcceeeeccccCCCCCCCCCeEEEEeCCE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEcCCCCCCCCccccccccccccccCCCCCCCCcEEeCCCCCeeecCHHHHHHHHHHHHHhcCCCcEEEEECCCCCHH
Q 004627          308 VMRILPRLNEDINEEWISDKTRFCYDGLKSQRLNDPMIRGADGRFKAVNWRDALAVVAEVMLQAKPEEIVGIAGRLSDAE  387 (741)
Q Consensus       308 V~rI~p~~~~~~n~g~iC~KGr~~~~~l~~~RL~~PliR~g~g~~~~iSWdeAl~~iA~~Lk~i~~~~i~~~~g~~~~~e  387 (741)
                      |+||.|++++++|+||||+||||+|++++++||++||+|. +|+|+++||||||+.||++|+++.++++++++|+..++|
T Consensus       241 V~ri~pr~n~~vN~g~iC~KgRf~~d~l~~~RL~~PliR~-~G~~~~iSWdEAl~~iA~kL~~~~~~~ia~i~g~~~~~E  319 (687)
T PRK09130        241 VMRILPRVNEEVNEEWISDKTRFSWDGLKRQRLDRPYVRK-NGKLVPASWDEAFAAIAAKIKGTPGEKIAAIAGDLADVE  319 (687)
T ss_pred             EEEEeCCCCCCCCCcccccccccccccccccccCCccEec-CCceeecCHHHHHHHHHHHHHhcCCCeEEEEECCCCCHH
Confidence            9999999999999999999999999999999999999998 799999999999999999999998899999999999999


Q ss_pred             HHHHHHHHHHHcCCCcccCCCCcchhhhhhhcCcccCCCccccccCCEEEEEcCChhhhhhHHHHHHHHHHHhCCCEEEE
Q 004627          388 SMMALKDFLNRMGSNNVWCEGTGAQSNADLRSGYIMNTSISGLEKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGY  467 (741)
Q Consensus       388 ~~~~~~~l~~~lGs~~~~~~~~~~~~~~~~~~~~~~~~~~~di~~ad~Ill~G~Np~~~~p~~~~rlr~a~~~~gakiiv  467 (741)
                      +++++++|++.+|++|+++..............|.++.++.|+++||+||+||+||++++|+++.|++++++++++||++
T Consensus       320 ~~~~lkkl~~~lGs~nid~~~~~~~~~~~~~~~~~~~~si~dIe~AD~IlliG~Np~~eaPvl~~rirka~~~g~~kIiv  399 (687)
T PRK09130        320 SMFALKDLMQKLGSSNLDCRQDGAKLDPSLRASYLFNTTIAGIEEADAILLIGANPRFEAPVLNARIRKRWRAGGFKIAV  399 (687)
T ss_pred             HHHHHHHHHHHcCCCccccccchhhhhhhhhccCCCCCCHHHHHhCCEEEEEccCcccccHHHHHHHHHHHHcCCCeEEE
Confidence            99999999999999999876543222222234556778999999999999999999999999999999998744469999


Q ss_pred             EccCCCCCccccccCCCHHHHHHHHcCHHHHHHHHhcCCCcEEEEcCCcccCCCHHHHHHHHHHHHHHcCCCCCCCccee
Q 004627          468 IGPATDLNYDHQHLGTGPKTLLEIAEGRHPFFSAISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNVIRPDWNGLN  547 (741)
Q Consensus       468 Idp~~~~t~~~~~lG~d~~~l~~i~~gi~~lA~~l~~a~~~~Ii~G~g~~~~~~g~~~~~ai~~L~~~~G~~~~~g~g~~  547 (741)
                      |||+.+.|++.+++|+++..|.+++.+.+++|+.|+++++++|++|.|+.++.+|..+.+++.+|+.++|+++++|+|++
T Consensus       400 Idpr~~~t~~~~~lg~~~~~l~~l~~g~~~~a~~l~~Ak~~~Ii~G~g~~~~~~g~~~~~ai~~La~~~G~~~~~~~G~~  479 (687)
T PRK09130        400 IGEQADLTYPYEYLGAGPDTLADLASGKHEFADVLKAAKRPMIIVGQGALARADGAAVLALAAKLAEKVGAVRDGWNGFN  479 (687)
T ss_pred             EcCccccCccccccCCCHHHHHHHHHhHHHHHHHHhcCCCcEEEECCcccccccHHHHHHHHHHHHHHhCCccCCCCCeE
Confidence            99999999999999999999999998999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCchhhhhhhhhcCCCCCCCC-------CccCceEEEEeccCccCccCCCCCCeEEEEcccCCccccccceeccCCCCC
Q 004627          548 VLLLNAAQAAALDLGLVPESSN-------SIESAKFVYLMGADDVDLEKLPNDAFVVYQGHHGDHGVYRANVILPASAFS  620 (741)
Q Consensus       548 ~l~~~~~~~g~~~~g~~p~~~~-------~~~~ik~l~l~g~np~~~~al~k~~fvV~~d~~~~eta~~ADvVLP~a~~~  620 (741)
                      +++..+|.+|++++|+.|....       ..+++|++|++|+||+....+ +.+|+||||+|+|+|+++||||||+++|+
T Consensus       480 ~L~~~an~~ga~dlG~~p~~~g~~~~~ll~~g~ik~l~llgadp~~~~~~-~~~fvV~qd~~~t~ta~~ADVVLP~a~~~  558 (687)
T PRK09130        480 VLHTAASRVGGLDLGFVPGEGGKDAAEMLESGALDVLYLLGADEIDISKG-KSAFVIYQGHHGDRGAHRADVILPGAAYT  558 (687)
T ss_pred             ecCCchHHHHHHHhcCCCCcccccHHHHHhCCCcCEEEEecCChhhcccc-cCCEEEEecccCCccHhhCCEEEcCCCcc
Confidence            9999999999999999875421       257899999999999754333 34799999999999999999999999999


Q ss_pred             CCCceEEcCCCeeEeeccccCCCCCCccHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCCCCCccccCCCCCCCCC--
Q 004627          621 EKEGTYENTEGCTQQTLPAVPTVGDARDDWKIIRALSEVAGMRLPYDTIGGIRSRIRTVAPNLLHVDEREPATLGPSL--  698 (741)
Q Consensus       621 Ek~gt~~n~eg~vq~~~~av~P~gear~d~~Il~~La~~lg~~~~y~~~~~v~~~~~~~~p~~~~~~~l~~~~~~~~~--  698 (741)
                      |++|+|+|+||++|..+++++|+|++|+||+||++|+++||.+++|++.+++++++.+..|++..++.+++..+....  
T Consensus       559 Ek~Gt~~n~egrvq~~~~av~p~gear~dw~Il~~La~~lg~~~~~~~~~~l~~~l~~~~p~~~~i~~~~~~~~~~~~~~  638 (687)
T PRK09130        559 EKSGTYVNTEGRVQLANRAVFPPGEAKEDWAILRALSDVLGKTLPYDSLAQLRAKLAAAYPHFAAIDQITPSKDAKDLAA  638 (687)
T ss_pred             ccCCeEECCCCceEEeccccCCCcccchHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCccccCccccCcccchhhhhh
Confidence            999999999999999999999999999999999999999999999999999999999999999888877776431100  


Q ss_pred             ccccccccCCCCcccccccccccchhhhccHHHHHHHHHHhc
Q 004627          699 KPEIKSEMDLTPFGSAVENFYMTDSITRASKTMAQCSAMLLK  740 (741)
Q Consensus       699 ~~~~~~~~~~~~~~~~~~~fY~~d~i~r~s~~m~~c~~~~~~  740 (741)
                      ....+......+|.+.+.|||+||+|+|+|++|++|++++.+
T Consensus       639 ~~~~~~~~~~~~~~~~~~~~y~t~~i~r~s~~m~~~~~~~~~  680 (687)
T PRK09130        639 LASKKGKLSKAPFTSPVKDFYLTNPIARASATMAECSALASG  680 (687)
T ss_pred             hhcccccccccccccccccceeccHHHHhhHHHHHHHHHHHh
Confidence            000011233356888899999999999999999999998753

>KOG2282 consensus NADH-ubiquinone oxidoreductase, NDUFS1/75 kDa subunit [Energy production and conversion]	Back alignment and domain information

>COG3383 Uncharacterized anaerobic dehydrogenase [General function prediction only]	Back alignment and domain information

>TIGR01973 NuoG NADH-quinone oxidoreductase, chain G	Back alignment and domain information

>PRK07860 NADH dehydrogenase subunit G; Validated	Back alignment and domain information

>PRK09129 NADH dehydrogenase subunit G; Validated	Back alignment and domain information

>PRK08166 NADH dehydrogenase subunit G; Validated	Back alignment and domain information

>COG1034 NuoG NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) [Energy production and conversion]	Back alignment and domain information

>PRK08493 NADH dehydrogenase subunit G; Validated	Back alignment and domain information

>cd02773 MopB_Res-Cmplx1_Nad11 MopB_Res_Cmplx1_Nad11: The second domain of the Nad11/75-kDa subunit of the NADH-quinone oxidoreductase/respiratory complex I/NADH dehydrogenase-1(NDH-1) of eukaryotes and the Nqo3/G subunit of alphaproteobacteria NDH-1	Back alignment and domain information

>cd02774 MopB_Res-Cmplx1_Nad11-M MopB_Res_Cmplx1_Nad11_M: Mitochondrial-encoded NADH-quinone oxidoreductase/respiratory complex I, the second domain of the Nad11/75-kDa subunit of some protists	Back alignment and domain information

>cd02754 MopB_Nitrate-R-NapA-like Nitrate reductases, NapA (Nitrate-R-NapA), NasA, and NarB catalyze the reduction of nitrate to nitrite	Back alignment and domain information

>cd02752 MopB_Formate-Dh-Na-like Formate dehydrogenase N, alpha subunit (Formate-Dh-Na) is a major component of nitrate respiration in bacteria such as in the E	Back alignment and domain information

>cd02753 MopB_Formate-Dh-H Formate dehydrogenase H (Formate-Dh-H) catalyzes the reversible oxidation of formate to CO2 with the release of a proton and two electrons	Back alignment and domain information

>cd02766 MopB_3 The MopB_3 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site	Back alignment and domain information

>TIGR03479 DMSO_red_II_alp DMSO reductase family type II enzyme, molybdopterin subunit	Back alignment and domain information

>TIGR01553 formate-DH-alph formate dehydrogenase, alpha subunit, proteobacterial-type	Back alignment and domain information

>TIGR01591 Fdh-alpha formate dehydrogenase, alpha subunit, archaeal-type	Back alignment and domain information

>cd02750 MopB_Nitrate-R-NarG-like Respiratory nitrate reductase A (NarGHI), alpha chain (NarG) and related proteins	Back alignment and domain information

>cd02771 MopB_NDH-1_NuoG2-N7 MopB_NDH-1_NuoG2-N7: The second domain of the NuoG subunit (with a [4Fe-4S] cluster, N7) of the NADH-quinone oxidoreductase/NADH dehydrogenase-1 (NDH-1) found in various bacteria	Back alignment and domain information

>cd02768 MopB_NADH-Q-OR-NuoG2 MopB_NADH-Q-OR-NuoG2: The NuoG/Nad11/75-kDa subunit (second domain) of the NADH-quinone oxidoreductase (NADH-Q-OR)/respiratory complex I/NADH dehydrogenase-1 (NDH-1)	Back alignment and domain information

>cd02762 MopB_1 The MopB_1 CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site	Back alignment and domain information

>cd02759 MopB_Acetylene-hydratase The MopB_Acetylene-hydratase CD contains acetylene hydratase (Ahy) and other related proteins	Back alignment and domain information

>cd02772 MopB_NDH-1_NuoG2 MopB_NDH-1_NuoG2: The second domain of the NuoG subunit of the NADH-quinone oxidoreductase/NADH dehydrogenase-1 (NDH-1), found in beta- and gammaproteobacteria	Back alignment and domain information

>cd02755 MopB_Thiosulfate-R-like The MopB_Thiosulfate-R-like CD contains thiosulfate-, sulfur-, and polysulfide-reductases, and other related proteins	Back alignment and domain information

>TIGR01706 NAPA periplasmic nitrate reductase, large subunit	Back alignment and domain information

>PRK13532 nitrate reductase catalytic subunit; Provisional	Back alignment and domain information

>cd02765 MopB_4 The MopB_4 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site	Back alignment and domain information

>cd02770 MopB_DmsA-EC This CD (MopB_DmsA-EC) includes the DmsA enzyme of the dmsABC operon encoding the anaerobic dimethylsulfoxide reductase (DMSOR) of Escherichia coli and other related DMSOR-like enzymes	Back alignment and domain information

>cd02763 MopB_2 The MopB_2 CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site	Back alignment and domain information

>cd02764 MopB_PHLH The MopB_PHLH CD includes a group of related uncharacterized putative hydrogenase-like homologs (PHLH) of molybdopterin binding (MopB) proteins	Back alignment and domain information

>PRK15488 thiosulfate reductase PhsA; Provisional	Back alignment and domain information

>cd02751 MopB_DMSOR-like The MopB_DMSOR-like CD contains dimethylsulfoxide reductase (DMSOR), biotin sulfoxide reductase (BSOR), trimethylamine N-oxide reductase (TMAOR) and other related proteins	Back alignment and domain information

>cd02757 MopB_Arsenate-R This CD includes the respiratory arsenate reductase, As(V), catalytic subunit (ArrA) and other related proteins	Back alignment and domain information

>PTZ00305 NADH:ubiquinone oxidoreductase; Provisional	Back alignment and domain information

>cd00368 Molybdopterin-Binding Molybdopterin-Binding (MopB) domain of the MopB superfamily of proteins, a large, diverse, heterogeneous superfamily of enzymes that, in general, bind molybdopterin as a cofactor	Back alignment and domain information

>cd02756 MopB_Arsenite-Ox Arsenite oxidase (Arsenite-Ox) oxidizes arsenite to the less toxic arsenate; it transfers the electrons obtained from the oxidation of arsenite towards the soluble periplasmic electron carriers cytochrome c and/or amicyanin	Back alignment and domain information

>cd02758 MopB_Tetrathionate-Ra The MopB_Tetrathionate-Ra CD contains tetrathionate reductase, subunit A, (TtrA) and other related proteins	Back alignment and domain information

>PRK14990 anaerobic dimethyl sulfoxide reductase subunit A; Provisional	Back alignment and domain information

>TIGR02166 dmsA_ynfE anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family	Back alignment and domain information

>cd02760 MopB_Phenylacetyl-CoA-OR The MopB_Phenylacetyl-CoA-OR CD contains the phenylacetyl-CoA:acceptor oxidoreductase, large subunit (PadB2), and other related proteins	Back alignment and domain information

>cd02769 MopB_DMSOR-BSOR-TMAOR The MopB_DMSOR-BSOR-TMAOR CD contains dimethylsulfoxide reductase (DMSOR), biotin sulfoxide reductase (BSOR), trimethylamine N-oxide reductase (TMAOR) and other related proteins	Back alignment and domain information

>TIGR02693 arsenite_ox_L arsenite oxidase, large subunit	Back alignment and domain information

>COG0243 BisC Anaerobic dehydrogenases, typically selenocysteine-containing [Energy production and conversion]	Back alignment and domain information

>PRK14991 tetrathionate reductase subunit A; Provisional	Back alignment and domain information

>TIGR03129 one_C_dehyd_B formylmethanofuran dehydrogenase subunit B	Back alignment and domain information

>PRK09939 putative oxidoreductase; Provisional	Back alignment and domain information

>TIGR00509 bisC_fam molybdopterin guanine dinucleotide-containing S/N-oxide reductases	Back alignment and domain information

>TIGR01701 Fdhalpha-like oxidoreductase alpha (molybdopterin) subunit	Back alignment and domain information

>TIGR02164 torA trimethylamine-N-oxide reductase TorA	Back alignment and domain information

>cd02761 MopB_FmdB-FwdB The MopB_FmdB-FwdB CD contains the molybdenum/tungsten formylmethanofuran dehydrogenases, subunit B (FmdB/FwdB), and other related proteins	Back alignment and domain information

>cd02767 MopB_ydeP The MopB_ydeP CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative molybdopterin cofactor binding site	Back alignment and domain information

>TIGR01580 narG respiratory nitrate reductase, alpha subunit	Back alignment and domain information

>PRK15102 trimethylamine N-oxide reductase I catalytic subunit; Provisional	Back alignment and domain information

>PF00384 Molybdopterin: Molybdopterin oxidoreductase; InterPro: IPR006656 This domain is found in a number of molybdopterin-containing oxidoreductases, tungsten formylmethanofuran dehydrogenase subunit d (FwdD) and molybdenum formylmethanofuran dehydrogenase subunit (FmdD); where a single domain constitutes almost the entire subunit	Back alignment and domain information

>PRK07569 bidirectional hydrogenase complex protein HoxU; Validated	Back alignment and domain information

>COG1029 FwdB Formylmethanofuran dehydrogenase subunit B [Energy production and conversion]	Back alignment and domain information

>COG5013 NarG Nitrate reductase alpha subunit [Energy production and conversion]	Back alignment and domain information

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional	Back alignment and domain information

>PF13510 Fer2_4: 2Fe-2S iron-sulfur cluster binding domain; PDB: 1Y56_A 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A	Back alignment and domain information

>TIGR00384 dhsB succinate dehydrogenase and fumarate reductase iron-sulfur protein	Back alignment and domain information

>PRK12577 succinate dehydrogenase iron-sulfur subunit; Provisional	Back alignment and domain information

>PRK12576 succinate dehydrogenase iron-sulfur subunit; Provisional	Back alignment and domain information

>PRK05950 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed	Back alignment and domain information

>PF10588 NADH-G_4Fe-4S_3: NADH-ubiquinone oxidoreductase-G iron-sulfur binding region; InterPro: IPR019574 NADH:ubiquinone oxidoreductase (complex I) (1	Back alignment and domain information

>PRK12385 fumarate reductase iron-sulfur subunit; Provisional	Back alignment and domain information

>PLN00129 succinate dehydrogenase [ubiquinone] iron-sulfur subunit	Back alignment and domain information

>PRK06259 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Provisional	Back alignment and domain information

>PRK07570 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Validated	Back alignment and domain information

>PRK08640 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed	Back alignment and domain information

>PRK13552 frdB fumarate reductase iron-sulfur subunit; Provisional	Back alignment and domain information

>PRK08764 ferredoxin; Provisional	Back alignment and domain information

>PRK12386 fumarate reductase iron-sulfur subunit; Provisional	Back alignment and domain information

>PRK05113 electron transport complex protein RnfB; Provisional	Back alignment and domain information

>COG0479 FrdB Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit [Energy production and conversion]	Back alignment and domain information

>PRK12575 succinate dehydrogenase iron-sulfur subunit; Provisional	Back alignment and domain information

>PF04879 Molybdop_Fe4S4: Molybdopterin oxidoreductase Fe4S4 domain; InterPro: IPR006963 The molybdopterin oxidoreductase Fe4S4 domain is found in a number of reductase/dehydrogenase families, which include the periplasmic nitrate reductase precursor and the formate dehydrogenase alpha chain []	Back alignment and domain information

>TIGR01944 rnfB electron transport complex, RnfABCDGE type, B subunit	Back alignment and domain information

>COG1143 NuoI Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Energy production and conversion]	Back alignment and domain information

>PRK06991 ferredoxin; Provisional	Back alignment and domain information

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional	Back alignment and domain information

>cd00207 fer2 2Fe-2S iron-sulfur cluster binding domain	Back alignment and domain information

>KOG3256 consensus NADH:ubiquinone oxidoreductase, NDUFS8/23 kDa subunit [Energy production and conversion]	Back alignment and domain information

>PF14697 Fer4_21: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 1H7X_C 1H7W_A 1GT8_A 1GTE_B 1GTH_B	Back alignment and domain information

>TIGR02008 fdx_plant ferredoxin [2Fe-2S]	Back alignment and domain information

>PF09326 DUF1982: Domain of unknown function (DUF1982); InterPro: IPR015405 This C-terminal domain is functionally uncharacterised and is found in various prokaryotic NADH dehydrogenases including NADH-quinone oxidoreductase, chain G	Back alignment and domain information

>PF13187 Fer4_9: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 2VKR_C 1KQG_B 1KQF_B 3GYX_J	Back alignment and domain information

>PRK10713 2Fe-2S ferredoxin YfaE; Provisional	Back alignment and domain information

>COG2080 CoxS Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion]	Back alignment and domain information

>TIGR00403 ndhI NADH-plastoquinone oxidoreductase subunit I protein	Back alignment and domain information

>PRK11433 aldehyde oxidoreductase 2Fe-2S subunit; Provisional	Back alignment and domain information

>TIGR02936 fdxN_nitrog ferredoxin III, nif-specific	Back alignment and domain information

>PRK08222 hydrogenase 4 subunit H; Validated	Back alignment and domain information

>PRK12387 formate hydrogenlyase complex iron-sulfur subunit; Provisional	Back alignment and domain information

>CHL00134 petF ferredoxin; Validated	Back alignment and domain information

>PF12838 Fer4_7: 4Fe-4S dicluster domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters	Back alignment and domain information

>PRK08348 NADH-plastoquinone oxidoreductase subunit; Provisional	Back alignment and domain information

>PTZ00038 ferredoxin; Provisional	Back alignment and domain information

>PRK05888 NADH dehydrogenase subunit I; Provisional	Back alignment and domain information

>TIGR02007 fdx_isc ferredoxin, 2Fe-2S type, ISC system	Back alignment and domain information

>TIGR03198 pucE xanthine dehydrogenase E subunit	Back alignment and domain information

>PRK09908 xanthine dehydrogenase subunit XdhC; Provisional	Back alignment and domain information

>PLN02593 adrenodoxin-like ferredoxin protein	Back alignment and domain information

>PLN00071 photosystem I subunit VII; Provisional	Back alignment and domain information

>TIGR03193 4hydroxCoAred 4-hydroxybenzoyl-CoA reductase, gamma subunit	Back alignment and domain information

>PF00111 Fer2: 2Fe-2S iron-sulfur cluster binding domain; InterPro: IPR001041 The ferredoxin protein family are electron carrier proteins with an iron-sulphur cofactor that act in a wide variety of metabolic reactions	Back alignment and domain information

>PLN03136 Ferredoxin; Provisional	Back alignment and domain information

>CHL00014 ndhI NADH dehydrogenase subunit I	Back alignment and domain information

>CHL00065 psaC photosystem I subunit VII	Back alignment and domain information

>TIGR03048 PS_I_psaC photosystem I iron-sulfur protein PsaC	Back alignment and domain information

>PRK06273 ferredoxin; Provisional	Back alignment and domain information

>PF13237 Fer4_10: 4Fe-4S dicluster domain; PDB: 2FGO_A	Back alignment and domain information

>COG2878 Predicted NADH:ubiquinone oxidoreductase, subunit RnfB [Energy production and conversion]	Back alignment and domain information

>TIGR02512 Fe_only_hydrog hydrogenases, Fe-only	Back alignment and domain information

>PRK05713 hypothetical protein; Provisional	Back alignment and domain information

>TIGR01971 NuoI NADH-quinone oxidoreductase, chain I	Back alignment and domain information

>PRK02651 photosystem I subunit VII; Provisional	Back alignment and domain information

>PTZ00490 Ferredoxin superfamily; Provisional	Back alignment and domain information

>COG2871 NqrF Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]	Back alignment and domain information

>PRK10882 hydrogenase 2 protein HybA; Provisional	Back alignment and domain information

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form	Back alignment and domain information

>PRK09626 oorD 2-oxoglutarate-acceptor oxidoreductase subunit OorD; Reviewed	Back alignment and domain information

>PRK09624 porD pyuvate ferredoxin oxidoreductase subunit delta; Reviewed	Back alignment and domain information

>COG0633 Fdx Ferredoxin [Energy production and conversion]	Back alignment and domain information

>PRK09623 vorD 2-ketoisovalerate ferredoxin oxidoreductase subunit delta; Reviewed	Back alignment and domain information

>COG1146 Ferredoxin [Energy production and conversion]	Back alignment and domain information

>PRK09625 porD pyruvate flavodoxin oxidoreductase subunit delta; Reviewed	Back alignment and domain information

>TIGR00402 napF ferredoxin-type protein NapF	Back alignment and domain information

>TIGR01941 nqrF NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit	Back alignment and domain information

>PRK05464 Na(+)-translocating NADH-quinone reductase subunit F; Provisional	Back alignment and domain information

>PF13085 Fer2_3: 2Fe-2S iron-sulfur cluster binding domain; PDB: 3P4Q_N 1KFY_N 3CIR_N 3P4R_B 2B76_N 1KF6_B 3P4P_N 3P4S_B 1L0V_B 1ZOY_B	Back alignment and domain information

>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated	Back alignment and domain information

>COG1144 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, delta subunit [Energy production and conversion]	Back alignment and domain information

>PRK10194 ferredoxin-type protein; Provisional	Back alignment and domain information

>PRK14028 pyruvate ferredoxin oxidoreductase subunit gamma/delta; Provisional	Back alignment and domain information

>TIGR02179 PorD_KorD 2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate family	Back alignment and domain information

>PRK13984 putative oxidoreductase; Provisional	Back alignment and domain information

>COG1145 NapF Ferredoxin [Energy production and conversion]	Back alignment and domain information

>PRK11872 antC anthranilate dioxygenase reductase; Provisional	Back alignment and domain information

>TIGR02912 sulfite_red_C sulfite reductase, subunit C	Back alignment and domain information

>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family	Back alignment and domain information

>TIGR02060 aprB adenosine phosphosulphate reductase, beta subunit	Back alignment and domain information

>PRK09477 napH quinol dehydrogenase membrane component; Provisional	Back alignment and domain information

>TIGR02163 napH_ ferredoxin-type protein, NapH/MauN family	Back alignment and domain information

>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein	Back alignment and domain information

>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric	Back alignment and domain information

>COG3894 Uncharacterized metal-binding protein [General function prediction only]	Back alignment and domain information

>TIGR03311 Se_dep_Molyb_1 selenium-dependent molybdenum hydroxylase 1	Back alignment and domain information

>PRK10684 HCP oxidoreductase, NADH-dependent; Provisional	Back alignment and domain information

>PRK09800 putative hypoxanthine oxidase; Provisional	Back alignment and domain information

>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]	Back alignment and domain information

>PRK07118 ferredoxin; Validated	Back alignment and domain information

>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated	Back alignment and domain information

>PF13183 Fer4_8: 4Fe-4S dicluster domain; PDB: 2BS4_B 1E7P_B 2BS3_B 1QLB_B 2BS2_B 3P4Q_N 1KFY_N 3CIR_N 3P4R_B 2B76_N	Back alignment and domain information

>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family	Back alignment and domain information

>TIGR00397 mauM_napG MauM/NapG family ferredoxin-type protein	Back alignment and domain information

>PF13247 Fer4_11: 4Fe-4S dicluster domain; PDB: 2VPY_F 2VPX_B 2VPZ_B 2VPW_F 3IR7_B 1Y5N_B 1R27_D 3EGW_B 1Y5I_B 1Q16_B	Back alignment and domain information

>TIGR01660 narH nitrate reductase, beta subunit	Back alignment and domain information

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed	Back alignment and domain information

>PRK09898 hypothetical protein; Provisional	Back alignment and domain information

>PRK09476 napG quinol dehydrogenase periplasmic component; Provisional	Back alignment and domain information

>PF12837 Fer4_6: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters	Back alignment and domain information

>TIGR02160 PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase, PaaK subunit	Back alignment and domain information

>PRK10194 ferredoxin-type protein; Provisional	Back alignment and domain information

>TIGR03478 DMSO_red_II_bet DMSO reductase family type II enzyme, iron-sulfur subunit	Back alignment and domain information

>TIGR03313 Se_sel_red_Mo probable selenate reductase, molybdenum-binding subunit	Back alignment and domain information

>PRK07118 ferredoxin; Validated	Back alignment and domain information

>TIGR02963 xanthine_xdhA xanthine dehydrogenase, small subunit	Back alignment and domain information

>PRK10330 formate dehydrogenase-H ferredoxin subunit; Provisional	Back alignment and domain information

>TIGR03478 DMSO_red_II_bet DMSO reductase family type II enzyme, iron-sulfur subunit	Back alignment and domain information

>PF12797 Fer4_2: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters	Back alignment and domain information

>PRK09476 napG quinol dehydrogenase periplasmic component; Provisional	Back alignment and domain information

>COG0437 HybA Fe-S-cluster-containing hydrogenase components 1 [Energy production and conversion]	Back alignment and domain information

>PRK14993 tetrathionate reductase subunit B; Provisional	Back alignment and domain information

>TIGR03149 cyt_nit_nrfC cytochrome c nitrite reductase, Fe-S protein	Back alignment and domain information

>COG2768 Uncharacterized Fe-S center protein [General function prediction only]	Back alignment and domain information

>COG2221 DsrA Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]	Back alignment and domain information

>PF13484 Fer4_16: 4Fe-4S double cluster binding domain	Back alignment and domain information

>TIGR03287 methan_mark_16 putative methanogenesis marker 16 metalloprotein	Back alignment and domain information

>TIGR01582 FDH-beta formate dehydrogenase, beta subunit, Fe-S containing	Back alignment and domain information

>COG1142 HycB Fe-S-cluster-containing hydrogenase components 2 [Energy production and conversion]	Back alignment and domain information

>PRK10330 formate dehydrogenase-H ferredoxin subunit; Provisional	Back alignment and domain information

>TIGR03149 cyt_nit_nrfC cytochrome c nitrite reductase, Fe-S protein	Back alignment and domain information

>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG	Back alignment and domain information

>TIGR00397 mauM_napG MauM/NapG family ferredoxin-type protein	Back alignment and domain information

>PRK10882 hydrogenase 2 protein HybA; Provisional	Back alignment and domain information

>TIGR02951 DMSO_dmsB DMSO reductase, iron-sulfur subunit	Back alignment and domain information

>PRK00783 DNA-directed RNA polymerase subunit D; Provisional	Back alignment and domain information

>TIGR02951 DMSO_dmsB DMSO reductase, iron-sulfur subunit	Back alignment and domain information

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed	Back alignment and domain information

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional	Back alignment and domain information

>PRK13795 hypothetical protein; Provisional	Back alignment and domain information

>TIGR02969 mam_aldehyde_ox aldehyde oxidase	Back alignment and domain information

>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]	Back alignment and domain information

>cd07030 RNAP_D D subunit of Archaeal RNA polymerase	Back alignment and domain information

>TIGR00273 iron-sulfur cluster-binding protein	Back alignment and domain information

>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit	Back alignment and domain information

>PRK14993 tetrathionate reductase subunit B; Provisional	Back alignment and domain information

>PF00037 Fer4: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters	Back alignment and domain information

>PRK05035 electron transport complex protein RnfC; Provisional	Back alignment and domain information

>PF13370 Fer4_13: 4Fe-4S single cluster domain; PDB: 1FXR_A 1DAX_A 1DFD_A 1WTF_A 1IR0_A 1IQZ_A 1SIZ_A 1SJ1_A 3PNI_B 2Z8Q_A	Back alignment and domain information

>TIGR00314 cdhA CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit	Back alignment and domain information

>PRK09326 F420H2 dehydrogenase subunit F; Provisional	Back alignment and domain information

>PRK00941 acetyl-CoA decarbonylase/synthase complex subunit alpha; Validated	Back alignment and domain information

>PF12798 Fer4_3: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters	Back alignment and domain information

>COG1139 Uncharacterized conserved protein containing a ferredoxin-like domain [Energy production and conversion]	Back alignment and domain information

>cd01916 ACS_1 Acetyl-CoA synthase (ACS), also known as acetyl-CoA decarbonylase, is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA	Back alignment and domain information

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed	Back alignment and domain information

>TIGR01582 FDH-beta formate dehydrogenase, beta subunit, Fe-S containing	Back alignment and domain information

>PRK09853 putative selenate reductase subunit YgfK; Provisional	Back alignment and domain information

>COG1142 HycB Fe-S-cluster-containing hydrogenase components 2 [Energy production and conversion]	Back alignment and domain information

>PRK09898 hypothetical protein; Provisional	Back alignment and domain information

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit	Back alignment and domain information

>TIGR01660 narH nitrate reductase, beta subunit	Back alignment and domain information

>PLN00192 aldehyde oxidase	Back alignment and domain information

>PF13459 Fer4_15: 4Fe-4S single cluster domain	Back alignment and domain information

>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]	Back alignment and domain information

>PRK05659 sulfur carrier protein ThiS; Validated	Back alignment and domain information

>PF00037 Fer4: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters	Back alignment and domain information

>TIGR03294 FrhG coenzyme F420 hydrogenase, subunit gamma	Back alignment and domain information

>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]	Back alignment and domain information

>COG0437 HybA Fe-S-cluster-containing hydrogenase components 1 [Energy production and conversion]	Back alignment and domain information

>TIGR03290 CoB_CoM_SS_C CoB--CoM heterodisulfide reductase, subunit C	Back alignment and domain information

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed	Back alignment and domain information

>PF13247 Fer4_11: 4Fe-4S dicluster domain; PDB: 2VPY_F 2VPX_B 2VPZ_B 2VPW_F 3IR7_B 1Y5N_B 1R27_D 3EGW_B 1Y5I_B 1Q16_B	Back alignment and domain information

>TIGR01945 rnfC electron transport complex, RnfABCDGE type, C subunit	Back alignment and domain information

>COG1141 Fer Ferredoxin [Energy production and conversion]	Back alignment and domain information

>PF12837 Fer4_6: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters	Back alignment and domain information

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]	Back alignment and domain information

>PRK11168 glpC sn-glycerol-3-phosphate dehydrogenase subunit C; Provisional	Back alignment and domain information

>TIGR02066 dsrB sulfite reductase, dissimilatory-type beta subunit	Back alignment and domain information

>TIGR03379 glycerol3P_GlpC glycerol-3-phosphate dehydrogenase, anaerobic, C subunit	Back alignment and domain information

>COG4656 RnfC Predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Energy production and conversion]	Back alignment and domain information

>PRK15055 anaerobic sulfite reductase subunit A; Provisional	Back alignment and domain information

>KOG3309 consensus Ferredoxin [Energy production and conversion]	Back alignment and domain information

>TIGR00276 iron-sulfur cluster binding protein, putative	Back alignment and domain information

>PRK13409 putative ATPase RIL; Provisional	Back alignment and domain information

>COG1152 CdhA CO dehydrogenase/acetyl-CoA synthase alpha subunit [Energy production and conversion]	Back alignment and domain information

>PF12838 Fer4_7: 4Fe-4S dicluster domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters	Back alignment and domain information

>COG1029 FwdB Formylmethanofuran dehydrogenase subunit B [Energy production and conversion]	Back alignment and domain information

>PRK11274 glcF glycolate oxidase iron-sulfur subunit; Provisional	Back alignment and domain information

>PRK07440 hypothetical protein; Provisional	Back alignment and domain information

>PF12800 Fer4_4: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters	Back alignment and domain information

>COG2221 DsrA Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]	Back alignment and domain information

>PF13534 Fer4_17: 4Fe-4S dicluster domain; PDB: 1ZOY_B 3AE9_B 3AED_B 3AEA_B 3AE1_B 3SFD_B 3ABV_B 3AEF_B 3AEB_B 3AE3_B	Back alignment and domain information

>PRK05863 sulfur carrier protein ThiS; Provisional	Back alignment and domain information

>PF12798 Fer4_3: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters	Back alignment and domain information

>PRK08053 sulfur carrier protein ThiS; Provisional	Back alignment and domain information

>TIGR02486 RDH reductive dehalogenase	Back alignment and domain information

>PF13484 Fer4_16: 4Fe-4S double cluster binding domain	Back alignment and domain information

>TIGR02910 sulfite_red_A sulfite reductase, subunit A	Back alignment and domain information

>COG0247 GlpC Fe-S oxidoreductase [Energy production and conversion]	Back alignment and domain information

>PRK06083 sulfur carrier protein ThiS; Provisional	Back alignment and domain information

>COG1143 NuoI Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Energy production and conversion]	Back alignment and domain information

>TIGR00315 cdhB CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit	Back alignment and domain information

>PRK00945 acetyl-CoA decarbonylase/synthase complex subunit epsilon; Provisional	Back alignment and domain information

>TIGR01683 thiS thiamine biosynthesis protein ThiS	Back alignment and domain information

>COG3862 Uncharacterized protein with conserved CXXC pairs [Function unknown]	Back alignment and domain information

>PF13237 Fer4_10: 4Fe-4S dicluster domain; PDB: 2FGO_A	Back alignment and domain information

>PRK15449 ferredoxin-like protein FixX; Provisional	Back alignment and domain information

>PF13187 Fer4_9: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 2VKR_C 1KQG_B 1KQF_B 3GYX_J	Back alignment and domain information

>PF12800 Fer4_4: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters	Back alignment and domain information

>TIGR02484 CitB CitB domain protein	Back alignment and domain information

>TIGR02163 napH_ ferredoxin-type protein, NapH/MauN family	Back alignment and domain information

>PRK05352 Na(+)-translocating NADH-quinone reductase subunit A; Provisional	Back alignment and domain information

>COG1600 Uncharacterized Fe-S protein [Energy production and conversion]	Back alignment and domain information

>PRK08364 sulfur carrier protein ThiS; Provisional	Back alignment and domain information

>PRK13984 putative oxidoreductase; Provisional	Back alignment and domain information

>TIGR01936 nqrA NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit	Back alignment and domain information

>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein	Back alignment and domain information

>KOG3256 consensus NADH:ubiquinone oxidoreductase, NDUFS8/23 kDa subunit [Energy production and conversion]	Back alignment and domain information

>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]	Back alignment and domain information

>COG1150 HdrC Heterodisulfide reductase, subunit C [Energy production and conversion]	Back alignment and domain information

>PLN02906 xanthine dehydrogenase	Back alignment and domain information

>PF13746 Fer4_18: 4Fe-4S dicluster domain	Back alignment and domain information

>PF14697 Fer4_21: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 1H7X_C 1H7W_A 1GT8_A 1GTE_B 1GTH_B	Back alignment and domain information

>PRK08222 hydrogenase 4 subunit H; Validated	Back alignment and domain information

>PRK12387 formate hydrogenlyase complex iron-sulfur subunit; Provisional	Back alignment and domain information

>PRK15033 tricarballylate utilization protein B; Provisional	Back alignment and domain information

>KOG0430 consensus Xanthine dehydrogenase [Nucleotide transport and metabolism]	Back alignment and domain information

>COG1145 NapF Ferredoxin [Energy production and conversion]	Back alignment and domain information

>TIGR02064 dsrA sulfite reductase, dissimilatory-type alpha subunit	Back alignment and domain information

>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional	Back alignment and domain information

>PRK09626 oorD 2-oxoglutarate-acceptor oxidoreductase subunit OorD; Reviewed	Back alignment and domain information

>PRK08348 NADH-plastoquinone oxidoreductase subunit; Provisional	Back alignment and domain information

>PRK09477 napH quinol dehydrogenase membrane component; Provisional	Back alignment and domain information

>TIGR03048 PS_I_psaC photosystem I iron-sulfur protein PsaC	Back alignment and domain information

>PRK06944 sulfur carrier protein ThiS; Provisional	Back alignment and domain information

>PRK07696 sulfur carrier protein ThiS; Provisional	Back alignment and domain information

>KOG3049 consensus Succinate dehydrogenase, Fe-S protein subunit [Energy production and conversion]	Back alignment and domain information

>PF13746 Fer4_18: 4Fe-4S dicluster domain	Back alignment and domain information

>PRK15449 ferredoxin-like protein FixX; Provisional	Back alignment and domain information

>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]	Back alignment and domain information

>COG2440 FixX Ferredoxin-like protein [Energy production and conversion]	Back alignment and domain information

>PRK05113 electron transport complex protein RnfB; Provisional	Back alignment and domain information

>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG	Back alignment and domain information

>PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated	Back alignment and domain information

>PLN00071 photosystem I subunit VII; Provisional	Back alignment and domain information

>PRK06488 sulfur carrier protein ThiS; Validated	Back alignment and domain information

>PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional	Back alignment and domain information

>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]	Back alignment and domain information

>PRK06273 ferredoxin; Provisional	Back alignment and domain information

>PRK06437 hypothetical protein; Provisional	Back alignment and domain information

>TIGR02936 fdxN_nitrog ferredoxin III, nif-specific	Back alignment and domain information

>PRK06991 ferredoxin; Provisional	Back alignment and domain information

>PRK02651 photosystem I subunit VII; Provisional	Back alignment and domain information

>TIGR01971 NuoI NADH-quinone oxidoreductase, chain I	Back alignment and domain information

>TIGR02486 RDH reductive dehalogenase	Back alignment and domain information

>COG3383 Uncharacterized anaerobic dehydrogenase [General function prediction only]	Back alignment and domain information

>PRK05888 NADH dehydrogenase subunit I; Provisional	Back alignment and domain information

>COG0348 NapH Polyferredoxin [Energy production and conversion]	Back alignment and domain information

>COG4630 XdhA Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A [Nucleotide transport and metabolism]	Back alignment and domain information

>TIGR02066 dsrB sulfite reductase, dissimilatory-type beta subunit	Back alignment and domain information

>CHL00065 psaC photosystem I subunit VII	Back alignment and domain information

>TIGR00276 iron-sulfur cluster binding protein, putative	Back alignment and domain information

>COG1035 FrhB Coenzyme F420-reducing hydrogenase, beta subunit [Energy production and conversion]	Back alignment and domain information

>TIGR02179 PorD_KorD 2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate family	Back alignment and domain information

>PRK09853 putative selenate reductase subunit YgfK; Provisional	Back alignment and domain information

>PRK09625 porD pyruvate flavodoxin oxidoreductase subunit delta; Reviewed	Back alignment and domain information

>TIGR01944 rnfB electron transport complex, RnfABCDGE type, B subunit	Back alignment and domain information

>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family	Back alignment and domain information

>TIGR00403 ndhI NADH-plastoquinone oxidoreductase subunit I protein	Back alignment and domain information

>PRK09624 porD pyuvate ferredoxin oxidoreductase subunit delta; Reviewed	Back alignment and domain information

>COG1146 Ferredoxin [Energy production and conversion]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		741
2fug_3		783	Crystal Structure Of The Hydrophilic Domain Of Resp		3e-60
1feh_A		574	Fe-Only Hydrogenase From Clostridium Pasteurianum L		3e-07
2iv2_X		715	Reinterpretation Of Reduced Form Of Formate Dehydro		3e-04

>pdb|2FUG|3 Chain 3, Crystal Structure Of The Hydrophilic Domain Of Respiratory Complex I From Thermus Thermophilus Length = 783

Back alignment and structure

Iteration: 1

Score = 230 bits (586), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 192/670 (28%), Positives = 280/670 (41%), Gaps = 90/670 (13%) Query: 70 IEVFVDGYPLKIPKGFTVLQACEVAGVDIPRFCYHSRLSIAGNCRMCLV----------- 118 + V V+ +++P G +V+ A AG D+P FC LS G CRMCLV Sbjct: 2 VRVKVNDRIVEVPPGTSVMDAVFHAGYDVPLFCSEKHLSPIGACRMCLVRIGLPKKGPDG 61 Query: 119 ----------EVEKSPKPVASCAMPALPGMKIKTDTPLAKKAREGVMEFLLMNHPLDCPI 168 E++ PK ASC GM + T + + ++A+ G++EF L+NHPLDCP Sbjct: 62 KPLLNEKGEPEIQWQPKLAASCVTAVADGMVVDTLSDVVREAQAGMVEFTLLNHPLDCPT 121 Query: 169 CDQGGECDLQDQSMAFGSDRGRFT------------EMKRSVVDKN--LGPLVKTVMTRC 214 CD+GG C+LQD+++ +G + E R VDK+ L P V RC Sbjct: 122 CDKGGACELQDRTVEYGLYEKYYQKGPLELPVYTRFEFTRRHVDKHHPLSPFVILDRERC 181 Query: 215 IQCTRCVRFATEVAGVQDLGMLGRGSGEEIGTYVEKLMTSELSGNVIDICPVGALTSKPF 274 I C RCVR+ EV G + L + RG IGT ++ + S SGN+ DICPVGAL Sbjct: 182 IHCKRCVRYFEEVPGDEVLDFIERGVHTFIGT-MDFGLPSGFSGNITDICPVGALLDLTA 240 Query: 275 AFKARNWELKGTETIDVTDAVGSNIRIDSRGPEVMRILPRLNEDINEEWISDKTRFCYDG 334 F+ARNWE++ T T VG I D+R E++RI R ++NE WI D RF ++ Sbjct: 241 RFRARNWEMEETPTTCALCPVGCGITADTRSGELLRIRAREVPEVNEIWICDAGRFGHEW 300 Query: 335 LKSQRLNDPMIRGADGRFKAVNWRDALAVVAEVMLQAKPEEIVGIAGRLSDAESMMALKD 394 RL P++R +GR W +A + E + +A+ EE+ + E + + Sbjct: 301 ADQNRLKTPLVR-KEGRLVEATWEEAFLALKEGLKEARGEEVGLYLAHDATLEEGLLASE 359 Query: 395 FLNRMGSNNVWCEGTGAQSNADLRSGYIMNTSISGLEKADCFLLVGTQPRVEAAMVNARI 454 + + ++ +G A + S+ L +AD F LV P EA +++ R+ Sbjct: 360 LAKALKTPHLDFQGRTAAP-----ASLFPPASLEDLLQAD-FALVLGDPTEEAPILHLRL 413 Query: 455 RKTVR--ANNAKVGYIGPATDLNYDHQHLGTGPKTLLEIAEGRHPFF------------- 499 + VR + + P DL + K L A R P Sbjct: 414 SEFVRDLKPPHRYNHGTPFADLQIKERMPRRTDKMAL-FAPYRAPLMKWAAIHEVHRPGE 472 Query: 500 ----------------------SAISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGN 537 A AKNPV+I+GAG+ + TV A + Sbjct: 473 EREILLALLGDKEGSEMVAKAKEAWEKAKNPVLILGAGVLQ--------DTVAAERARLL 524 Query: 538 VIRPDWNXXXXXXXXXXXXXXXXXXXXPESSNSIESAKFVYLMGADDVDLEKLPNDAFVV 597 R S + +Y E L FVV Sbjct: 525 AERKGAKVLAMTPAANARGLEAMGVLPGAKGASWDEPGALYAYYGFVPPEEALKGKRFVV 584 Query: 598 YQGHHGDHGVYR-ANVILPASAFSEKEGTYENTEGCTQQTLPAVPTVGDARDDWKIIRAL 656 H R A+V+LPA F EK G N EG PA G+A +++ L Sbjct: 585 MHLSHLHPLAERYAHVVLPAPTFYEKRGHLVNLEGRVLPLSPAPIENGEAEGALQVLALL 644 Query: 657 SEVAGMRLPY 666 +E G+R P+ Sbjct: 645 AEALGVRPPF 654

PyMOL of 2fug

>pdb|1FEH|A Chain A, Fe-Only Hydrogenase From Clostridium Pasteurianum Length = 574

Back alignment and structure

>pdb|2IV2|X Chain X, Reinterpretation Of Reduced Form Of Formate Dehydrogenase H From E. Coli Length = 715

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		741
3i9v_3		783	NADH-quinone oxidoreductase subunit 3; electron tr	0.0
3c8y_A		574	Iron hydrogenase 1; dithiomethylether, H-cluster,	2e-52
2iv2_X		715	Formate dehydrogenase H; oxidoreductase, 4Fe-4S, a	2e-13
2iv2_X		715	Formate dehydrogenase H; oxidoreductase, 4Fe-4S, a	1e-07
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-13
2nap_A		723	Protein (periplasmic nitrate reductase); nitrogeno	1e-12
2nap_A		723	Protein (periplasmic nitrate reductase); nitrogeno	3e-06
3ml1_A		802	NAPA, periplasmic nitrate reductase; heterodimer,	1e-12
3ml1_A		802	NAPA, periplasmic nitrate reductase; heterodimer,	2e-07
2e7z_A		727	Acetylene hydratase AHY; tungstoprotein, DMSO redu	7e-12
2e7z_A		727	Acetylene hydratase AHY; tungstoprotein, DMSO redu	3e-10
1g8k_A		825	Arsenite oxidase; molybdopterin, [3Fe-4S] cluster,	1e-11
1g8k_A		825	Arsenite oxidase; molybdopterin, [3Fe-4S] cluster,	4e-05
2vpz_A		765	Thiosulfate reductase; oxidoreductase, molybdopter	7e-10
2vpz_A		765	Thiosulfate reductase; oxidoreductase, molybdopter	3e-09
1kqf_A		1015	FDH-N alpha, formate dehydrogenase, nitrate-induci	3e-09
1kqf_A		1015	FDH-N alpha, formate dehydrogenase, nitrate-induci	3e-07
1h0h_A		977	Formate dehydrogenase (large subunit); tungsten se	2e-08
1h0h_A		977	Formate dehydrogenase (large subunit); tungsten se	2e-07
1ti6_A		875	Pyrogallol hydroxytransferase large subunit; molyb	8e-07
1ti6_A		875	Pyrogallol hydroxytransferase large subunit; molyb	3e-05
2ivf_A		976	Ethylbenzene dehydrogenase alpha-subunit; anaerobi	2e-05
1tmo_A		829	TMAO reductase, trimethylamine N-oxide reductase;	9e-05
1eu1_A		780	Dimethyl sulfoxide reductase; molybdenum, molybden	1e-04

>3i9v_3 NADH-quinone oxidoreductase subunit 3; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_3* 2fug_3* 3iam_3* 3ias_3* 3m9s_3* Length = 783	Back alignment and structure

 Score =  794 bits (2053), Expect = 0.0
 Identities = 188/740 (25%), Positives = 297/740 (40%), Gaps = 104/740 (14%)

Query: 70  IEVFVDGYPLKIPKGFTVLQACEVAGVDIPRFCYHSRLSIAGNCRMCLV----------- 118
           + V V+   +++P G +V+ A   AG D+P FC    LS  G CRMCLV           
Sbjct: 2   VRVKVNDRIVEVPPGTSVMDAVFHAGYDVPLFCSEKHLSPIGACRMCLVRIGLPKKGPDG 61

Query: 119 ----------EVEKSPKPVASCAMPALPGMKIKTDTPLAKKAREGVMEFLLMNHPLDCPI 168
                     E++  PK  ASC      GM + T + + ++A+ G++EF L+NHPLDCP 
Sbjct: 62  KPLLNEKGEPEIQWQPKLAASCVTAVADGMVVDTLSDVVREAQAGMVEFTLLNHPLDCPT 121

Query: 169 CDQGGECDLQDQSMAFGSDRG-------------RFTEMKRSVV-DKNLGPLVKTVMTRC 214
           CD+GG C+LQD+++ +G                 RF   +R V     L P V     RC
Sbjct: 122 CDKGGACELQDRTVEYGLYEKYYQKGPLELPVYTRFEFTRRHVDKHHPLSPFVILDRERC 181

Query: 215 IQCTRCVRFATEVAGVQDLGMLGRGSGEEIGTYVEKLMTSELSGNVIDICPVGALTSKPF 274
           I C RCVR+  EV G + L  + RG    IGT  +  + S  SGN+ DICPVGAL     
Sbjct: 182 IHCKRCVRYFEEVPGDEVLDFIERGVHTFIGTM-DFGLPSGFSGNITDICPVGALLDLTA 240

Query: 275 AFKARNWELKGTETIDVTDAVGSNIRIDSRGPEVMRILPRLNEDINEEWISDKTRFCYDG 334
            F+ARNWE++ T T      VG  I  D+R  E++RI  R   ++NE WI D  RF ++ 
Sbjct: 241 RFRARNWEMEETPTTCALCPVGCGITADTRSGELLRIRAREVPEVNEIWICDAGRFGHEW 300

Query: 335 LKSQRLNDPMIRGADGRFKAVNWRDALAVVAEVMLQAKPEEIVGIAGRLSDAESMMALKD 394
               RL  P++R  +GR     W +A   + E + +A+ EE+       +  E  +   +
Sbjct: 301 ADQNRLKTPLVRK-EGRLVEATWEEAFLALKEGLKEARGEEVGLYLAHDATLEEGLLASE 359

Query: 395 FLNRMGSNNVWCEGTGAQSNADLRSGYIMNTSISGLEKADCFLLVGTQPRVEAAMVNARI 454
               + + ++  +           +      S+  L +AD  L++G  P  EA +++ R+
Sbjct: 360 LAKALKTPHLDFQ-----GRTAAPASLFPPASLEDLLQADFALVLGD-PTEEAPILHLRL 413

Query: 455 RKTVRAN------------------------NAKVGYIGP------ATDLNYDHQHLGTG 484
            + VR                            K+    P           ++    G  
Sbjct: 414 SEFVRDLKPPHRYNHGTPFADLQIKERMPRRTDKMALFAPYRAPLMKWAAIHEVHRPGEE 473

Query: 485 PKTLLEIAEGRHP------FFSAISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNV 538
            + LL +   +           A   AKNPV+I+GAG+ +          +         
Sbjct: 474 REILLALLGDKEGSEMVAKAKEAWEKAKNPVLILGAGVLQDTVAAERARLLAE------- 526

Query: 539 IRPDWNGLNVLLLNAAQAAALDLGLVPESSN-SIESAKFVYLMGADDVDLEKLPNDAFVV 597
                  +  +   A       +G++P +   S +    +Y         E L    FVV
Sbjct: 527 --RKGAKVLAMTPAANARGLEAMGVLPGAKGASWDEPGALYAYYGFVPPEEALKGKRFVV 584

Query: 598 YQ-GHHGDHGVYRANVILPASAFSEKEGTYENTEGCTQQTLPAVPTVGDARDDWKIIRAL 656
               H        A+V+LPA  F EK G   N EG      PA    G+A    +++  L
Sbjct: 585 MHLSHLHPLAERYAHVVLPAPTFYEKRGHLVNLEGRVLPLSPAPIENGEAEGALQVLALL 644

Query: 657 SEVAGMRLPYDTIGGIRSRIRTVAPNLLHVDEREPATLGPSLKPEIKSEMDLTPFGSAVE 716
           +E  G+R P+      +  ++              A   P     +   +          
Sbjct: 645 AEALGVRPPFRLHLEAQKALK--------------ARKVPEAMGRLSFRLKELRPKERKG 690

Query: 717 NFYMTDSITRASKTMAQCSA 736
            FY+  ++ +A + + +   
Sbjct: 691 AFYLRPTMWKAHQAVGKAQE 710

PyMOL of 3i9v

>3c8y_A Iron hydrogenase 1; dithiomethylether, H-cluster, iron-sulfur binding, oxidoreductase; HET: HCN; 1.39A {Clostridium pasteurianum} SCOP: c.96.1.1 d.15.4.2 d.58.1.5 PDB: 1c4c_A* 1c4a_A* 1feh_A* Length = 574	Back alignment and structure

>2iv2_X Formate dehydrogenase H; oxidoreductase, 4Fe-4S, anaerobic, complete proteome, direct protein sequencing, Fe4S4, iron, iron sulfur cluster; HET: 2MD MGD; 2.27A {Escherichia coli} SCOP: b.52.2.2 c.81.1.1 PDB: 1fdi_A* 1fdo_A* 1aa6_A* Length = 715	Back alignment and structure

>2iv2_X Formate dehydrogenase H; oxidoreductase, 4Fe-4S, anaerobic, complete proteome, direct protein sequencing, Fe4S4, iron, iron sulfur cluster; HET: 2MD MGD; 2.27A {Escherichia coli} SCOP: b.52.2.2 c.81.1.1 PDB: 1fdi_A* 1fdo_A* 1aa6_A* Length = 715	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>2nap_A Protein (periplasmic nitrate reductase); nitrogenous acceptor, dissimilatory nitrate reductase; HET: MGD MES; 1.90A {Desulfovibrio desulfuricans} SCOP: b.52.2.2 c.81.1.1 PDB: 2jim_A* 2jir_A* 2jip_A* 2v45_A* 2v3v_A* 2jiq_A* 2jio_A* Length = 723	Back alignment and structure

>2nap_A Protein (periplasmic nitrate reductase); nitrogenous acceptor, dissimilatory nitrate reductase; HET: MGD MES; 1.90A {Desulfovibrio desulfuricans} SCOP: b.52.2.2 c.81.1.1 PDB: 2jim_A* 2jir_A* 2jip_A* 2v45_A* 2v3v_A* 2jiq_A* 2jio_A* Length = 723	Back alignment and structure

>3ml1_A NAPA, periplasmic nitrate reductase; heterodimer, oxidoreductase; HET: MGD HEC; 1.60A {Ralstonia eutropha} PDB: 3o5a_A* 1ogy_A* 2nya_A* Length = 802	Back alignment and structure

>3ml1_A NAPA, periplasmic nitrate reductase; heterodimer, oxidoreductase; HET: MGD HEC; 1.60A {Ralstonia eutropha} PDB: 3o5a_A* 1ogy_A* 2nya_A* Length = 802	Back alignment and structure

>2e7z_A Acetylene hydratase AHY; tungstoprotein, DMSO reductase family, iron-sulfur-cluster, lyase; HET: MGD; 1.26A {Pelobacter acetylenicus} Length = 727	Back alignment and structure

>2e7z_A Acetylene hydratase AHY; tungstoprotein, DMSO reductase family, iron-sulfur-cluster, lyase; HET: MGD; 1.26A {Pelobacter acetylenicus} Length = 727	Back alignment and structure

>1g8k_A Arsenite oxidase; molybdopterin, [3Fe-4S] cluster, [2Fe-2S] rieske, oxidoreductase; HET: MGD; 1.64A {Alcaligenes faecalis} SCOP: b.52.2.2 c.81.1.1 PDB: 1g8j_A* Length = 825	Back alignment and structure

>1g8k_A Arsenite oxidase; molybdopterin, [3Fe-4S] cluster, [2Fe-2S] rieske, oxidoreductase; HET: MGD; 1.64A {Alcaligenes faecalis} SCOP: b.52.2.2 c.81.1.1 PDB: 1g8j_A* Length = 825	Back alignment and structure

>2vpz_A Thiosulfate reductase; oxidoreductase, molybdopterin guanine dinucleotide, iron-sulfur, metal-binding, molybdopterin; HET: MGD; 2.40A {Thermus thermophilus} PDB: 2vpx_A* 2vpw_A* 2vpy_A* Length = 765	Back alignment and structure

>2vpz_A Thiosulfate reductase; oxidoreductase, molybdopterin guanine dinucleotide, iron-sulfur, metal-binding, molybdopterin; HET: MGD; 2.40A {Thermus thermophilus} PDB: 2vpx_A* 2vpw_A* 2vpy_A* Length = 765	Back alignment and structure

>1kqf_A FDH-N alpha, formate dehydrogenase, nitrate-inducible, major S; oxidoreductase, selenium, selenocysteine, seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli} SCOP: b.52.2.2 c.81.1.1 PDB: 1kqg_A* Length = 1015	Back alignment and structure

>1kqf_A FDH-N alpha, formate dehydrogenase, nitrate-inducible, major S; oxidoreductase, selenium, selenocysteine, seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli} SCOP: b.52.2.2 c.81.1.1 PDB: 1kqg_A* Length = 1015	Back alignment and structure

>1h0h_A Formate dehydrogenase (large subunit); tungsten selenium formate dehydrogenase, selenocysteine, molybdopterin, MGD, iron-sulphur cluster; HET: 2MD MGD EPE; 1.8A {Desulfovibrio gigas} SCOP: b.52.2.2 c.81.1.1 Length = 977	Back alignment and structure

>1h0h_A Formate dehydrogenase (large subunit); tungsten selenium formate dehydrogenase, selenocysteine, molybdopterin, MGD, iron-sulphur cluster; HET: 2MD MGD EPE; 1.8A {Desulfovibrio gigas} SCOP: b.52.2.2 c.81.1.1 Length = 977	Back alignment and structure

>1ti6_A Pyrogallol hydroxytransferase large subunit; molybdenum binding enzyme, MGD-cofactors, DMSO-reductase family, 4Fe-4S-cluster; HET: MGD BTT; 2.00A {Pelobacter acidigallici} SCOP: b.52.2.2 c.81.1.1 PDB: 1ti2_A* 1ti4_A* 1vld_M* 1vle_M* 1vlf_M* Length = 875	Back alignment and structure

>1ti6_A Pyrogallol hydroxytransferase large subunit; molybdenum binding enzyme, MGD-cofactors, DMSO-reductase family, 4Fe-4S-cluster; HET: MGD BTT; 2.00A {Pelobacter acidigallici} SCOP: b.52.2.2 c.81.1.1 PDB: 1ti2_A* 1ti4_A* 1vld_M* 1vle_M* 1vlf_M* Length = 875	Back alignment and structure

>2ivf_A Ethylbenzene dehydrogenase alpha-subunit; anaerobic hydrocarbon degradation, MOCO, Fe/S cluster, MO- B enzyme, DMSO reductase family; HET: MES MGD MD1 HEM; 1.88A {Aromatoleum aromaticum} Length = 976	Back alignment and structure

>1tmo_A TMAO reductase, trimethylamine N-oxide reductase; oxidoreductase, oxotransferase, molybdoenzyme, MO-cofactor, molybdenum; HET: 2MD; 2.50A {Shewanella massilia} SCOP: b.52.2.2 c.81.1.1 Length = 829	Back alignment and structure

>1eu1_A Dimethyl sulfoxide reductase; molybdenum, molybdenum cofactor, DMSO, molybdopte oxidoreductase; HET: GLC MGD EPE; 1.30A {Rhodobacter sphaeroides} SCOP: b.52.2.2 c.81.1.1 PDB: 4dmr_A* 1dmr_A* 1e5v_A* 1h5n_A* 2dmr_A* 3dmr_A* 1e61_A* 1e60_A* 1e18_A* 1dms_A* Length = 780	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		741
d2fug32		439	c.81.1.1 (3:247-685) NADH-quinone oxidoreductase c	3e-69
d2fug34		151	d.58.1.5 (3:96-246) NADH-quinone oxidoreductase ch	3e-47
d3c8ya2		126	d.15.4.2 (A:1-126) Fe-only hydrogenase, N-terminal	2e-43
d2iv2x2		564	c.81.1.1 (X:1-564) Formate dehydrogenase H {Escher	2e-20
d2iv2x2		564	c.81.1.1 (X:1-564) Formate dehydrogenase H {Escher	3e-14
d1ogya2		670	c.81.1.1 (A:12-681) Periplasmic nitrate reductase	4e-18
d1ogya2		670	c.81.1.1 (A:12-681) Periplasmic nitrate reductase	3e-10
d2jioa2		597	c.81.1.1 (A:4-600) Periplasmic nitrate reductase a	6e-16
d2jioa2		597	c.81.1.1 (A:4-600) Periplasmic nitrate reductase a	8e-08
d2fug33		95	d.15.4.2 (3:1-95) Nadh-quinone oxidoreductase chai	6e-14
d3c8ya3		83	d.58.1.5 (A:127-209) Fe-only hydrogenase, second d	4e-13
d1h0ha2		812	c.81.1.1 (A:1-812) Tungsten containing formate deh	2e-12
d1h0ha2		812	c.81.1.1 (A:1-812) Tungsten containing formate deh	8e-09
d1g8ka2		679	c.81.1.1 (A:4-682) Arsenite oxidase large subunit	4e-12
d1g8ka2		679	c.81.1.1 (A:4-682) Arsenite oxidase large subunit	6e-10
d1kqfa2		817	c.81.1.1 (A:34-850) Formate dehydrogenase N, alpha	2e-10
d1kqfa2		817	c.81.1.1 (A:34-850) Formate dehydrogenase N, alpha	1e-08
d1y5ia2		1074	c.81.1.1 (A:1-1074) Respiratory nitrate reductase	1e-09
d1y5ia2		1074	c.81.1.1 (A:1-1074) Respiratory nitrate reductase	8e-09
d1vlfm2		728	c.81.1.1 (M:1-728) Transhydroxylase alpha subunit,	9e-06
d1vlfm2		728	c.81.1.1 (M:1-728) Transhydroxylase alpha subunit,	0.001
d1eu1a2		622	c.81.1.1 (A:4-625) Dimethylsulfoxide reductase (DM	1e-05
d1eu1a2		622	c.81.1.1 (A:4-625) Dimethylsulfoxide reductase (DM	1e-04
d1tmoa2		627	c.81.1.1 (A:5-631) Trimethylamine N-oxide reductas	1e-04
d1doia_		128	d.15.4.1 (A:) 2Fe-2S ferredoxin {Archaeon Haloarcu	0.003

>d2fug32 c.81.1.1 (3:247-685) NADH-quinone oxidoreductase chain 3, Nqo3 {Thermus thermophilus [TaxId: 274]} Length = 439	Back information, alignment and structure


class: Alpha and beta proteins (a/b)
fold: Formate dehydrogenase/DMSO reductase, domains 1-3
superfamily: Formate dehydrogenase/DMSO reductase, domains 1-3
family: Formate dehydrogenase/DMSO reductase, domains 1-3
domain: NADH-quinone oxidoreductase chain 3, Nqo3
species: Thermus thermophilus [TaxId: 274]

 Score =  232 bits (591), Expect = 3e-69
 Identities = 90/435 (20%), Positives = 161/435 (37%), Gaps = 54/435 (12%)

Query: 281 WELKGTETIDVTDAVGSNIRIDSRGPEVMRILPRLNEDINEEWISDKTRFCYDGLKSQRL 340
           WE++ T T      VG  I  D+R  E++RI  R   ++NE WI D  RF ++     RL
Sbjct: 1   WEMEETPTTCALCPVGCGITADTRSGELLRIRAREVPEVNEIWICDAGRFGHEWADQNRL 60

Query: 341 NDPMIRGADGRFKAVNWRDALAVVAEVMLQAKPEEIVGIAGRLSDAESMMALKDFLNRMG 400
             P++R  +GR     W +A   + E + +A+ EE+       +  E  +   +    + 
Sbjct: 61  KTPLVRK-EGRLVEATWEEAFLALKEGLKEARGEEVGLYLAHDATLEEGLLASELAKALK 119

Query: 401 SNNVWCEGTGAQSNADLRSGYIMNTSISGLEKADCFLLVGTQPRVEAAMVNARIRKTVR- 459
           + ++  +G  A   +          S+  L +AD  L++G     EA +++ R+ + VR 
Sbjct: 120 TPHLDFQGRTAAPAS-----LFPPASLEDLLQADFALVLGDP-TEEAPILHLRLSEFVRD 173

Query: 460 -----------------------ANNAKVGYIGP------ATDLNYDHQHLGTGPKTLLE 490
                                      K+    P           ++    G   + LL 
Sbjct: 174 LKPPHRYNHGTPFADLQIKERMPRRTDKMALFAPYRAPLMKWAAIHEVHRPGEEREILLA 233

Query: 491 IAEGRHPFFS------AISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAKKGNVIRPDWN 544
           +   +           A   AKNPV+I+GAG+ +            A  +   +      
Sbjct: 234 LLGDKEGSEMVAKAKEAWEKAKNPVLILGAGVLQDTV---------AAERARLLAERKGA 284

Query: 545 GLNVLLLNAAQAAALDLGLVP--ESSNSIESAKFVYLMGADDVDLEKLPNDAFVVYQGHH 602
            +  +   A       +G++P  + ++  E        G    +         V++  H 
Sbjct: 285 KVLAMTPAANARGLEAMGVLPGAKGASWDEPGALYAYYGFVPPEEALKGKRFVVMHLSHL 344

Query: 603 GDHGVYRANVILPASAFSEKEGTYENTEGCTQQTLPAVPTVGDARDDWKIIRALSEVAGM 662
                  A+V+LPA  F EK G   N EG      PA    G+A    +++  L+E  G+
Sbjct: 345 HPLAERYAHVVLPAPTFYEKRGHLVNLEGRVLPLSPAPIENGEAEGALQVLALLAEALGV 404

Query: 663 RLPYDTIGGIRSRIR 677
           R P+      +  ++
Sbjct: 405 RPPFRLHLEAQKALK 419

PyMOL of d2fug32

>d2fug34 d.58.1.5 (3:96-246) NADH-quinone oxidoreductase chain 3, Nqo3, domain 2 {Thermus thermophilus [TaxId: 274]} Length = 151	Back information, alignment and structure

>d3c8ya2 d.15.4.2 (A:1-126) Fe-only hydrogenase, N-terminal domain {Clostridium pasteurianum [TaxId: 1501]} Length = 126	Back information, alignment and structure

>d2iv2x2 c.81.1.1 (X:1-564) Formate dehydrogenase H {Escherichia coli [TaxId: 562]} Length = 564	Back information, alignment and structure

>d2iv2x2 c.81.1.1 (X:1-564) Formate dehydrogenase H {Escherichia coli [TaxId: 562]} Length = 564	Back information, alignment and structure

>d1ogya2 c.81.1.1 (A:12-681) Periplasmic nitrate reductase alpha chain {Rhodobacter sphaeroides [TaxId: 1063]} Length = 670	Back information, alignment and structure

>d1ogya2 c.81.1.1 (A:12-681) Periplasmic nitrate reductase alpha chain {Rhodobacter sphaeroides [TaxId: 1063]} Length = 670	Back information, alignment and structure

>d2jioa2 c.81.1.1 (A:4-600) Periplasmic nitrate reductase alpha chain {Desulfovibrio desulfuricans [TaxId: 876]} Length = 597	Back information, alignment and structure

>d2jioa2 c.81.1.1 (A:4-600) Periplasmic nitrate reductase alpha chain {Desulfovibrio desulfuricans [TaxId: 876]} Length = 597	Back information, alignment and structure

>d2fug33 d.15.4.2 (3:1-95) Nadh-quinone oxidoreductase chain 3, Nqo3, N-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 95	Back information, alignment and structure

>d3c8ya3 d.58.1.5 (A:127-209) Fe-only hydrogenase, second domain {Clostridium pasteurianum [TaxId: 1501]} Length = 83	Back information, alignment and structure

>d1h0ha2 c.81.1.1 (A:1-812) Tungsten containing formate dehydrogenase, large subunit {Desulfovibrio gigas [TaxId: 879]} Length = 812	Back information, alignment and structure

>d1h0ha2 c.81.1.1 (A:1-812) Tungsten containing formate dehydrogenase, large subunit {Desulfovibrio gigas [TaxId: 879]} Length = 812	Back information, alignment and structure

>d1g8ka2 c.81.1.1 (A:4-682) Arsenite oxidase large subunit {Alcaligenes faecalis [TaxId: 511]} Length = 679	Back information, alignment and structure

>d1g8ka2 c.81.1.1 (A:4-682) Arsenite oxidase large subunit {Alcaligenes faecalis [TaxId: 511]} Length = 679	Back information, alignment and structure

>d1kqfa2 c.81.1.1 (A:34-850) Formate dehydrogenase N, alpha subunit {Escherichia coli [TaxId: 562]} Length = 817	Back information, alignment and structure

>d1kqfa2 c.81.1.1 (A:34-850) Formate dehydrogenase N, alpha subunit {Escherichia coli [TaxId: 562]} Length = 817	Back information, alignment and structure

>d1y5ia2 c.81.1.1 (A:1-1074) Respiratory nitrate reductase 1 alpha chain {Escherichia coli [TaxId: 562]} Length = 1074	Back information, alignment and structure

>d1y5ia2 c.81.1.1 (A:1-1074) Respiratory nitrate reductase 1 alpha chain {Escherichia coli [TaxId: 562]} Length = 1074	Back information, alignment and structure

>d1vlfm2 c.81.1.1 (M:1-728) Transhydroxylase alpha subunit, AthL {Pelobacter acidigallici [TaxId: 35816]} Length = 728	Back information, alignment and structure

>d1vlfm2 c.81.1.1 (M:1-728) Transhydroxylase alpha subunit, AthL {Pelobacter acidigallici [TaxId: 35816]} Length = 728	Back information, alignment and structure

>d1eu1a2 c.81.1.1 (A:4-625) Dimethylsulfoxide reductase (DMSO reductase) {Rhodobacter sphaeroides [TaxId: 1063]} Length = 622	Back information, alignment and structure

>d1eu1a2 c.81.1.1 (A:4-625) Dimethylsulfoxide reductase (DMSO reductase) {Rhodobacter sphaeroides [TaxId: 1063]} Length = 622	Back information, alignment and structure

>d1tmoa2 c.81.1.1 (A:5-631) Trimethylamine N-oxide reductase {Shewanella massilia [TaxId: 76854]} Length = 627	Back information, alignment and structure

>d1doia_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 128	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		741
d2iv2x2		564	Formate dehydrogenase H {Escherichia coli [TaxId:	100.0
d1h0ha2		812	Tungsten containing formate dehydrogenase, large s	100.0
d1kqfa2		817	Formate dehydrogenase N, alpha subunit {Escherichi	100.0
d2fug32		439	NADH-quinone oxidoreductase chain 3, Nqo3 {Thermus	100.0
d1ogya2		670	Periplasmic nitrate reductase alpha chain {Rhodoba	100.0
d2jioa2		597	Periplasmic nitrate reductase alpha chain {Desulfo	100.0
d1g8ka2		679	Arsenite oxidase large subunit {Alcaligenes faecal	100.0
d1y5ia2		1074	Respiratory nitrate reductase 1 alpha chain {Esche	100.0
d1vlfm2		728	Transhydroxylase alpha subunit, AthL {Pelobacter a	100.0
d1eu1a2		622	Dimethylsulfoxide reductase (DMSO reductase) {Rhod	100.0
d1tmoa2		627	Trimethylamine N-oxide reductase {Shewanella massi	100.0
d3c8ya2		126	Fe-only hydrogenase, N-terminal domain {Clostridiu	100.0
d2fug34		151	NADH-quinone oxidoreductase chain 3, Nqo3, domain	100.0
d2fug33		95	Nadh-quinone oxidoreductase chain 3, Nqo3, N-termi	99.73
d3c8ya3		83	Fe-only hydrogenase, second domain {Clostridium pa	99.45
d2fug91		154	NADH-quinone oxidoreductase chain 9, Nqo9 {Thermus	98.99
d1xera_		103	Ferredoxin {Archaeon Sulfolobus sp. [TaxId: 2288]}	98.86
d1i7ha_		109	Adrenodoxin-like ferredoxin {Escherichia coli [Tax	98.84
d1hfel2		85	Fe-only hydrogenase larger subunit, N-domain {Desu	98.82
d1iuea_		98	2Fe-2S ferredoxin {Malaria parasite (Plasmodium fa	98.81
d1awda_		94	2Fe-2S ferredoxin {Chlorella fusca [TaxId: 3073]}	98.8
d1frra_		95	2Fe-2S ferredoxin {Equisetum arvense [TaxId: 3258]	98.78
d1frda_		98	2Fe-2S ferredoxin {Cyanobacterium (Anabaena sp.),	98.75
d1jb0c_		80	Photosystem I iron-sulfur protein PsaC {Synechococ	98.71
d1czpa_		98	2Fe-2S ferredoxin {Cyanobacterium (Anabaena sp.),	98.71
d1a70a_		97	2Fe-2S ferredoxin {Spinach (Spinacia oleracea) [Ta	98.68
d1gtea5		173	Dihydropyrimidine dehydrogenase, C-terminal domain	98.65
d1t3qa2		81	Quinoline 2-oxidoreductase small subunit QorS, N-d	98.65
d1krha3		104	Benzoate dioxygenase reductase, N-terminal domain	98.63
d2piaa3		98	Phthalate dioxygenase reductase, C-terminal domain	98.62
d1vlba2		80	Aldehyde oxidoreductase, N-terminal domain {Desulf	98.62
d1rm6c2		81	4-hydroxybenzoyl-CoA reductase gamma subunit HrcC,	98.57
d1jq4a_		98	Methane monooxygenase reductase N-terminal domain	98.56
d1dgja2		80	Aldehyde oxidoreductase, N-terminal domain {Desulf	98.49
d2c42a5		117	Pyruvate-ferredoxin oxidoreductase, PFOR, domain V	98.48
d1l5pa_		93	2Fe-2S ferredoxin {Trichomonas vaginalis [TaxId: 5	98.45
d1ffva2		79	Carbone monoxide (CO) dehydrogenase iron-sulfur pr	98.44
d1doia_		128	2Fe-2S ferredoxin {Archaeon Haloarcula marismortui	98.43
d1iqza_		81	Ferredoxin {Bacillus thermoproteolyticus [TaxId: 1	98.43
d1e9ma_		106	2Fe-2S ferredoxin {Rhodobacter capsulatus, ferredo	98.42
d1wria_		93	2Fe-2S ferredoxin {Equisetum arvense [TaxId: 3258]	98.4
d1n62a2		79	Carbone monoxide (CO) dehydrogenase iron-sulfur pr	98.4
d1jroa2		84	Xanthine dehydrogenase chain A, N-terminal domain	98.37
d1sj1a_		66	Fe3S4-ferredoxin PF1909 {Pyrococcus furiosus [TaxI	98.36
d2bt6a1		104	Adrenodoxin {Cow (Bos taurus) [TaxId: 9913]}	98.33
d1b9ra_		105	2Fe-2S ferredoxin {Pseudomonas sp., terpredoxin [T	98.3
d1jnrb_		149	Adenylylsulfate reductase B subunit {Archaeon Arch	98.3
d1xlqa1		106	2Fe-2S ferredoxin {Pseudomonas putida, putidaredox	98.3
d1v97a2		90	Xanthine oxidase, N-terminal domain {Cow (Bos taur	98.22
d1blua_		80	Ferredoxin II {Chromatium vinosum [TaxId: 1049]}	98.17
d1vjwa_		59	Ferredoxin A {Thermotoga maritima [TaxId: 2336]}	98.15
d1rgva_		80	Ferredoxin II {Thauera aromatica [TaxId: 59405]}	98.14
d1fxra_		64	Ferredoxin I {Sulfate-reducing bacteria (Desulfovi	98.14
d1fxda_		58	Ferredoxin I {Desulfovibrio gigas [TaxId: 879]}	98.14
d1y5ib1		509	Respiratory nitrate reductase 1 beta chain {Escher	98.03
d1kqfb1		244	Formate dehydrogenase N, iron-sulfur (beta) subuni	98.01
d2fdna_		55	Ferredoxin II {Clostridium acidurici [TaxId: 1556]	98.0
d1h98a_		77	Ferredoxin {Thermus thermophilus [TaxId: 274]}	97.99
d1bc6a_		77	Ferredoxin {Bacillus schlegelii [TaxId: 1484]}	97.93
d1dura_		55	Ferredoxin II {Peptostreptococcus asaccharolyticus	97.92
d7fd1a_		106	Ferredoxin {Azotobacter vinelandii [TaxId: 354]}	97.92
d1kf6b2		105	Fumarate reductase iron-sulfur protein, N-terminal	97.7
d1kqfb1		244	Formate dehydrogenase N, iron-sulfur (beta) subuni	97.65
d2bs2b2		106	Fumarate reductase iron-sulfur protein, N-terminal	97.54
d1vlfn2		195	Transhydroxylase beta subunit, BthL, N-terminal do	97.52
d1y5ib1		509	Respiratory nitrate reductase 1 beta chain {Escher	97.41
d1kf6b1		138	Fumarate reductase {Escherichia coli [TaxId: 562]}	97.38
d1vlfn2		195	Transhydroxylase beta subunit, BthL, N-terminal do	97.35
d2bs2b1		133	Fumarate reductase {Wolinella succinogenes [TaxId:	97.34
d1nekb2		106	Succinate dehydogenase iron-sulfur protein, N-term	97.3
d1nekb1		132	Succinate dehydogenase {Escherichia coli [TaxId: 5	97.18
d3c7bb1		65	DsrB insert domain {Archaeoglobus fulgidus [TaxId:	96.57
d1h0hb_		214	Tungsten containing formate dehydrogenase, small s	96.44
d1h0hb_		214	Tungsten containing formate dehydrogenase, small s	95.92
d2ihta1		177	Carboxyethylarginine synthase {Streptomyces clavul	95.76
d1ozha1		179	Catabolic acetolactate synthase {Klebsiella pneumo	95.08
d1pvda1		179	Pyruvate decarboxylase {Baker's yeast (Saccharomyc	94.7
d1ybha1		179	Acetohydroxyacid synthase catalytic subunit {Thale	94.55
d2ez9a1		183	Pyruvate oxidase {Lactobacillus plantarum [TaxId:	94.22
d2ji7a1		175	Oxalyl-CoA decarboxylase {Oxalobacter formigenes [	93.92
d1zpda1		175	Pyruvate decarboxylase {Zymomonas mobilis [TaxId:	93.09
d1q6za1		160	Benzoylformate decarboxylase {Pseudomonas putida [	92.26
d2djia1		177	Pyruvate oxidase {Aerococcus viridans [TaxId: 1377	92.25
d1t9ba1		171	Acetohydroxyacid synthase catalytic subunit {Baker	91.7
d2iv2x2		564	Formate dehydrogenase H {Escherichia coli [TaxId:	91.1
d2gmha3		102	Electron transfer flavoprotein-ubiquinone oxidored	90.98
d1bc6a_		77	Ferredoxin {Bacillus schlegelii [TaxId: 1484]}	90.6
d2fug91		154	NADH-quinone oxidoreductase chain 9, Nqo9 {Thermus	90.58
d1xera_		103	Ferredoxin {Archaeon Sulfolobus sp. [TaxId: 2288]}	90.57
d1rgva_		80	Ferredoxin II {Thauera aromatica [TaxId: 59405]}	90.29
d1jnrb_		149	Adenylylsulfate reductase B subunit {Archaeon Arch	90.26
d1ovma1		161	Indole-3-pyruvate decarboxylase {Enterobacter cloa	90.15
d3c7bb1		65	DsrB insert domain {Archaeoglobus fulgidus [TaxId:	89.96
d2fdna_		55	Ferredoxin II {Clostridium acidurici [TaxId: 1556]	89.91
d1ytla1		158	Acetyl-CoA decarbonylase/synthase complex epsilon	89.04
d1jb0c_		80	Photosystem I iron-sulfur protein PsaC {Synechococ	89.01
d2c42a5		117	Pyruvate-ferredoxin oxidoreductase, PFOR, domain V	88.85
d2jioa2		597	Periplasmic nitrate reductase alpha chain {Desulfo	88.38
d1blua_		80	Ferredoxin II {Chromatium vinosum [TaxId: 1049]}	88.35
d7fd1a_		106	Ferredoxin {Azotobacter vinelandii [TaxId: 354]}	88.15
d1hfel2		85	Fe-only hydrogenase larger subunit, N-domain {Desu	87.95
d1h98a_		77	Ferredoxin {Thermus thermophilus [TaxId: 274]}	87.9
d1h0ha2		812	Tungsten containing formate dehydrogenase, large s	87.52
d1ozha1		179	Catabolic acetolactate synthase {Klebsiella pneumo	86.93
d1dura_		55	Ferredoxin II {Peptostreptococcus asaccharolyticus	86.27
d2djia1		177	Pyruvate oxidase {Aerococcus viridans [TaxId: 1377	86.03
d1gtea5		173	Dihydropyrimidine dehydrogenase, C-terminal domain	85.02
d1ybha1		179	Acetohydroxyacid synthase catalytic subunit {Thale	84.71
d1zud21		65	Thiamin biosynthesis sulfur carrier protein ThiS {	82.34
d1ogya2		670	Periplasmic nitrate reductase alpha chain {Rhodoba	81.61
d2ez9a1		183	Pyruvate oxidase {Lactobacillus plantarum [TaxId:	81.41

>d2iv2x2 c.81.1.1 (X:1-564) Formate dehydrogenase H {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Formate dehydrogenase/DMSO reductase, domains 1-3
superfamily: Formate dehydrogenase/DMSO reductase, domains 1-3
family: Formate dehydrogenase/DMSO reductase, domains 1-3
domain: Formate dehydrogenase H
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=0  Score=566.88  Aligned_cols=438  Identities=21%  Similarity=0.317  Sum_probs=367.9

Q ss_pred             EEEEEECCCCCCCCCCCEEEEECCEEEEECCCCCCCCCCCCCCCCCCCCCCCCC-CC----CCCCCEEEC-CCCCEEECC
Q ss_conf             034431378999999814863599899985898888986656621111235677-78----888967837-899802509
Q 004627          283 LKGTETIDVTDAVGSNIRIDSRGPEVMRILPRLNEDINEEWISDKTRFCYDGLK-SQ----RLNDPMIRG-ADGRFKAVN  356 (741)
Q Consensus       283 l~~~~siC~~C~~gC~i~v~vrdg~Vvri~p~~~~~vn~g~iC~KGr~~~~~l~-~~----RL~~PliR~-g~g~~~~iS  356 (741)
                      +|+++|+|++|+.||+|.|+|+||+|+||+|+ ++++|+||+|+|||++++.+| ++    ||++||+|+ ++|+|++||
T Consensus         1 ~k~v~TvC~~C~~~C~i~v~v~~G~v~ri~~~-~~~~n~g~lC~kG~~~~~~~~~p~~~~~Rl~~Pl~R~~~~g~~~~IS   79 (564)
T d2iv2x2           1 MKKVVTVCPYCASGCKINLVVDNGKIVRAEAA-QGKTNQGTLCLKGYYGWDFINDTQILTPRLKTPMIRRQRGGKLEPVS   79 (564)
T ss_dssp             CEEEEEECSSBTTCCEEEEEEETTEEEEEEEC-CCTTTTTCCCHHHHHTTGGGGCCCSSSCBCCSCEECCSTTSCCEECC
T ss_pred             CCEEEEECCCCCCCCCEEEEEECCEEEEEECC-CCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCEEECC
T ss_conf             94687877988167981999999999999899-99989743376255479973597768753678847307999689828


Q ss_pred             HHHHHHHHHHHHHHCC----CCCEEEEECCC-CCHHHHHHHHHHHH-HCCCCCCCCCCCCCH------HHHHHHCCCCCC
Q ss_conf             9999999999997039----99599997799-99999999999999-739983027998200------234321275568
Q 004627          357 WRDALAVVAEVMLQAK----PEEIVGIAGRL-SDAESMMALKDFLN-RMGSNNVWCEGTGAQ------SNADLRSGYIMN  424 (741)
Q Consensus       357 WdEAl~~iA~~Lk~~~----~~~i~~~~g~~-~~~E~~~~~~~l~~-~lGs~n~~~~~~~~~------~~~~~~~~~~~~  424 (741)
                      |||||++||++|++++    +++|+++.++. +..|..+++++|++ .+|++|++...+.|.      ....++.. ...
T Consensus        80 WdeAld~ia~kl~~i~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~~~c~~~~~~~~~~~~G~~-~~~  158 (564)
T d2iv2x2          80 WDEALNYVAERLSAIKEKYGPDAIQTTGSSRGTGNETNYVMQKFARAVIGTNNVDCCARVCHGPSVAGLHQSVGNG-AMS  158 (564)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCGGGEEEECCSSTTCHHHHHHHHHHHHHTTCCCCEECSSCCSCCSSSCSHHHHHSCC-SCS
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCC-CCC
T ss_conf             9999999999999999872987799982588766288999999888735998757754223206778887653578-666


Q ss_pred             CCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCC------CCCCHHHHH---------
Q ss_conf             88224235798999748811120279999999999299979999568897743002------499999999---------
Q 004627          425 TSISGLEKADCFLLVGTQPRVEAAMVNARIRKTVRANNAKVGYIGPATDLNYDHQH------LGTGPKTLL---------  489 (741)
Q Consensus       425 ~~~~di~~ad~Ill~G~Np~~~~p~~~~rlr~a~~~~g~kii~Idp~~~~t~~~~~------lG~d~~~l~---------  489 (741)
                      .+..|++++|+||+||+||.+++|+...++++++ ++|+||++|||+.+.|+..++      +|+|...+.         
T Consensus       159 ~~~~d~~~ad~il~~G~n~~~~~~~~~~~~~~a~-~~G~kvvvidPr~t~ta~~Ad~~l~i~PGtD~al~lal~~~ii~~  237 (564)
T d2iv2x2         159 NAINEIDNTDLVFVFGYNPADSHPIVANHVINAK-RNGAKIIVCDPRKIETARIADMHIALKNGSNIALLNAMGHVIIEE  237 (564)
T ss_dssp             SCGGGGGGCSEEEEESCCHHHHCHHHHHHHHHHH-HTTCEEEEECSSCCHHHHTCSEEECCCTTCHHHHHHHHHHHHHHT
T ss_pred             CCCCEEECCCEEEECCCCCCCCCCHHHHHHHHHH-HCCCEEEEECCCCCCHHHHHHHHHHCCCCCHHHHHHCCHHHHHHC
T ss_conf             6510121377799888354334514789999999-879989997887774488866665325681999985512356657


Q ss_pred             -------------------------------HHH----CCHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             -------------------------------997----199999999860999499976876667779999999999999
Q 004627          490 -------------------------------EIA----EGRHPFFSAISNAKNPVIIVGAGLFERKDKDAIFSTVEAIAK  534 (741)
Q Consensus       490 -------------------------------~i~----~gi~~lA~~l~~ak~~~ii~G~g~~~~~~g~~~~~~i~~La~  534 (741)
                                                     +++    +.|.++|+.++.+++++|++|.+..++.++.+..+++..|+.
T Consensus       238 ~~~D~~fv~~~t~gf~~~~~~~~~~tpe~~~~i~gv~~~~I~~~A~~~~~~~~~~i~~g~g~~~~~~~~~~~~a~~~l~~  317 (564)
T d2iv2x2         238 NLYDKAFVASRTEGFEEYRKIVEGYTPESVEDITGVSASEIRQAARMYAQAKSAAILWGMGVTQFYQGVETVRSLTSLAM  317 (564)
T ss_dssp             TCSCHHHHHHHEECHHHHHHHHHTCCSGGGHHHHCCCHHHHHHHHHHHHHSSSEEEEEETTGGGSSSHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHCCCCCCCHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHHHH
T ss_conf             88467888751267410012230399778666512018888999998616675499845432234336778999999999


Q ss_pred             HCCCCCCCCCCEEECCCHHHHHHHHHCCCCCCC----------------------------C----------CCCCCCEE
Q ss_conf             829977899613544703444345634999897----------------------------7----------87667439
Q 004627          535 KGNVIRPDWNGLNVLLLNAAQAAALDLGLVPES----------------------------S----------NSIESAKF  576 (741)
Q Consensus       535 ~~G~~~~~g~g~~~l~~~~n~~g~~~~G~~p~~----------------------------~----------~~~~~ik~  576 (741)
                      ++|+++++|+|++.+.+..|..++...|..+..                            .          ...+++++
T Consensus       318 l~G~ig~~g~g~~~~~g~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  397 (564)
T d2iv2x2         318 LTGNLGKPHAGVNPVRGQNNVQGACDMGALPDTYPGYQYVKDPANREKFAKAWGVESLPAHTGYRISELPHRAAHGEVRA  397 (564)
T ss_dssp             HTTCSSSTTCSEEEECSBTTHHHHHHTTCBTTEEGGGEETTCHHHHHHHHHHTTCSCCCCSCCCCGGGHHHHHHTTSCCE
T ss_pred             HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHCCCCHHHHHHHHHCCCCCEE
T ss_conf             84678997766432467777543334576766677534568745543433303531111011110456655303787126


Q ss_pred             EEEECCCCCC--------CCCCCCCCEEEEECCCCCCCCCCCCEECCCCCCCCCCCEEECCCCEEEEECCCCCCCCCCCC
Q ss_conf             9996369447--------35899997599985669911123434226887787773277389806951565689999962
Q 004627          577 VYLMGADDVD--------LEKLPNDAFVVYQGHHGDHGVYRANVILPASAFSEKEGTYENTEGCTQQTLPAVPTVGDARD  648 (741)
Q Consensus       577 l~l~g~np~~--------~~al~k~~fvV~~d~~~t~ta~~ADiVLP~at~~E~~gt~~n~eg~vq~~~~av~p~gear~  648 (741)
                      +++++.||+.        .++|+|++|+|++|+|+|+|+++||||||+++|+|++|+++|.++++|..+|+|+|+||+|+
T Consensus       398 ~~~~~~np~~~~~~~~~~~~al~kl~fvV~~d~~~teta~~ADiVLP~~~~~E~~g~~~~~~~~~~~~~~~v~P~ge~r~  477 (564)
T d2iv2x2         398 AYIMGEDPLQTDAELSAVRKAFEDLELVIVQDIFMTKTASAADVILPSTSWGEHEGVFTAADRGFQRFFKAVEPKWDLKT  477 (564)
T ss_dssp             EEEESCCHHHHSSSHHHHHHHHHHSSEEEEEESBCCHHHHTCSEEEEBCCBTTBCEEEECTTSEEEEECCCSCCSSSCBC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEECCCCCEECCCEEECCCCCEEEEEECCCCCCCCCC
T ss_conf             78872343010246999999986779179984256777630118643676213064686378766988105078534778


Q ss_pred             HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCC--CCCCCCCCCCCCCC-C---CCC-CCC-CCCCCCCC--CCCCCC
Q ss_conf             99999999999499999999999999999868998--78222388887999-8---644-345-56888755--434445
Q 004627          649 DWKIIRALSEVAGMRLPYDTIGGIRSRIRTVAPNL--LHVDEREPATLGPS-L---KPE-IKS-EMDLTPFG--SAVENF  718 (741)
Q Consensus       649 d~~Il~~La~~lg~~~~~~~~~~i~~~~~~~~p~~--~~~~~l~~~~~~~~-~---~~~-~~~-~~~~~~~~--~~~~~f  718 (741)
                      ||+|+++|+++||.++.|.+.+++++++.+..|.+  ++|+++.+.+++.. .   ... +.. .+...+|.  +++.+|
T Consensus       478 d~~i~~~La~rlG~~~~~~~~~e~~~~~~~~~~~~~g~t~e~l~~~g~~~~p~~~~~~~~~~~~~~~~~~f~TpsGK~ef  557 (564)
T d2iv2x2         478 DWQIISEIATRMGYPMHYNNTQEIWDELRHLCPDFYGATYEKMGELGFIQWPCRDTSDADQGTSYLFKEKFDTPNGLAQF  557 (564)
T ss_dssp             HHHHHHHHHHHTTCCCCCSSHHHHHHHHHHHCTTTTTCCHHHHTTTCCEESCCCCSSTTCCBCSSSCSSCCSSTTSCEEC
T ss_pred             HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
T ss_conf             99999999998289988989999999999858576799999995079886578875445788623168999598963899


Q ss_pred             CCCCH
Q ss_conf             65345
Q 004627          719 YMTDS  723 (741)
Q Consensus       719 Y~~d~  723 (741)
                      |.+|=
T Consensus       558 ~s~~~  562 (564)
T d2iv2x2         558 FTCDW  562 (564)
T ss_dssp             CCCCC
T ss_pred             EECCC
T ss_conf             81365

PyMOL of d2iv2x2

>d1h0ha2 c.81.1.1 (A:1-812) Tungsten containing formate dehydrogenase, large subunit {Desulfovibrio gigas [TaxId: 879]}	Back information, alignment and structure

>d1kqfa2 c.81.1.1 (A:34-850) Formate dehydrogenase N, alpha subunit {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d2fug32 c.81.1.1 (3:247-685) NADH-quinone oxidoreductase chain 3, Nqo3 {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1ogya2 c.81.1.1 (A:12-681) Periplasmic nitrate reductase alpha chain {Rhodobacter sphaeroides [TaxId: 1063]}	Back information, alignment and structure

>d2jioa2 c.81.1.1 (A:4-600) Periplasmic nitrate reductase alpha chain {Desulfovibrio desulfuricans [TaxId: 876]}	Back information, alignment and structure

>d1g8ka2 c.81.1.1 (A:4-682) Arsenite oxidase large subunit {Alcaligenes faecalis [TaxId: 511]}	Back information, alignment and structure

>d1y5ia2 c.81.1.1 (A:1-1074) Respiratory nitrate reductase 1 alpha chain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1vlfm2 c.81.1.1 (M:1-728) Transhydroxylase alpha subunit, AthL {Pelobacter acidigallici [TaxId: 35816]}	Back information, alignment and structure

>d1eu1a2 c.81.1.1 (A:4-625) Dimethylsulfoxide reductase (DMSO reductase) {Rhodobacter sphaeroides [TaxId: 1063]}	Back information, alignment and structure

>d1tmoa2 c.81.1.1 (A:5-631) Trimethylamine N-oxide reductase {Shewanella massilia [TaxId: 76854]}	Back information, alignment and structure

>d3c8ya2 d.15.4.2 (A:1-126) Fe-only hydrogenase, N-terminal domain {Clostridium pasteurianum [TaxId: 1501]}	Back information, alignment and structure

>d2fug34 d.58.1.5 (3:96-246) NADH-quinone oxidoreductase chain 3, Nqo3, domain 2 {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d2fug33 d.15.4.2 (3:1-95) Nadh-quinone oxidoreductase chain 3, Nqo3, N-terminal domain {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d3c8ya3 d.58.1.5 (A:127-209) Fe-only hydrogenase, second domain {Clostridium pasteurianum [TaxId: 1501]}	Back information, alignment and structure

>d2fug91 d.58.1.5 (9:26-179) NADH-quinone oxidoreductase chain 9, Nqo9 {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1xera_ d.58.1.3 (A:) Ferredoxin {Archaeon Sulfolobus sp. [TaxId: 2288]}	Back information, alignment and structure

>d1i7ha_ d.15.4.1 (A:) Adrenodoxin-like ferredoxin {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1hfel2 d.58.1.5 (L:2-86) Fe-only hydrogenase larger subunit, N-domain {Desulfovibrio desulfuricans [TaxId: 876]}	Back information, alignment and structure

>d1iuea_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}	Back information, alignment and structure

>d1awda_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Chlorella fusca [TaxId: 3073]}	Back information, alignment and structure

>d1frra_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Equisetum arvense [TaxId: 3258]}	Back information, alignment and structure

>d1frda_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Cyanobacterium (Anabaena sp.), pcc 7119 and 7120 [TaxId: 1167]}	Back information, alignment and structure

>d1jb0c_ d.58.1.2 (C:) Photosystem I iron-sulfur protein PsaC {Synechococcus elongatus [TaxId: 32046]}	Back information, alignment and structure

>d1czpa_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Cyanobacterium (Anabaena sp.), pcc 7119 and 7120 [TaxId: 1167]}	Back information, alignment and structure

>d1a70a_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Spinach (Spinacia oleracea) [TaxId: 3562]}	Back information, alignment and structure

>d1gtea5 d.58.1.5 (A:845-1017) Dihydropyrimidine dehydrogenase, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}	Back information, alignment and structure

>d1t3qa2 d.15.4.2 (A:7-87) Quinoline 2-oxidoreductase small subunit QorS, N-domain {Pseudomonas putida [TaxId: 303]}	Back information, alignment and structure

>d1krha3 d.15.4.2 (A:2-105) Benzoate dioxygenase reductase, N-terminal domain {Acinetobacter sp. [TaxId: 472]}	Back information, alignment and structure

>d2piaa3 d.15.4.2 (A:224-321) Phthalate dioxygenase reductase, C-terminal domain {Pseudomonas cepacia, db01 [TaxId: 292]}	Back information, alignment and structure

>d1vlba2 d.15.4.2 (A:1-80) Aldehyde oxidoreductase, N-terminal domain {Desulfovibrio gigas [TaxId: 879]}	Back information, alignment and structure

>d1rm6c2 d.15.4.2 (C:1-81) 4-hydroxybenzoyl-CoA reductase gamma subunit HrcC, N-terminal domain {Thauera aromatica [TaxId: 59405]}	Back information, alignment and structure

>d1jq4a_ d.15.4.2 (A:) Methane monooxygenase reductase N-terminal domain {Methylococcus capsulatus [TaxId: 414]}	Back information, alignment and structure

>d1dgja2 d.15.4.2 (A:1-80) Aldehyde oxidoreductase, N-terminal domain {Desulfovibrio desulfuricans [TaxId: 876]}	Back information, alignment and structure

>d2c42a5 d.58.1.5 (A:669-785) Pyruvate-ferredoxin oxidoreductase, PFOR, domain V {Desulfovibrio africanus [TaxId: 873]}	Back information, alignment and structure

>d1l5pa_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Trichomonas vaginalis [TaxId: 5722]}	Back information, alignment and structure

>d1ffva2 d.15.4.2 (A:3-81) Carbone monoxide (CO) dehydrogenase iron-sulfur protein, N-domain {Hydrogenophaga pseudoflava [TaxId: 47421]}	Back information, alignment and structure

>d1doia_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Archaeon Haloarcula marismortui [TaxId: 2238]}	Back information, alignment and structure

>d1iqza_ d.58.1.4 (A:) Ferredoxin {Bacillus thermoproteolyticus [TaxId: 1427]}	Back information, alignment and structure

>d1e9ma_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Rhodobacter capsulatus, ferredoxin VI [TaxId: 1061]}	Back information, alignment and structure

>d1wria_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Equisetum arvense [TaxId: 3258]}	Back information, alignment and structure

>d1n62a2 d.15.4.2 (A:3-81) Carbone monoxide (CO) dehydrogenase iron-sulfur protein, N-domain {Oligotropha carboxidovorans, formerly Pseudomonas carboxydovorans [TaxId: 40137]}	Back information, alignment and structure

>d1jroa2 d.15.4.2 (A:1-84) Xanthine dehydrogenase chain A, N-terminal domain {Rhodobacter capsulatus [TaxId: 1061]}	Back information, alignment and structure

>d1sj1a_ d.58.1.4 (A:) Fe3S4-ferredoxin PF1909 {Pyrococcus furiosus [TaxId: 2261]}	Back information, alignment and structure

>d2bt6a1 d.15.4.1 (A:5-108) Adrenodoxin {Cow (Bos taurus) [TaxId: 9913]}	Back information, alignment and structure

>d1b9ra_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Pseudomonas sp., terpredoxin [TaxId: 306]}	Back information, alignment and structure

>d1jnrb_ d.58.1.5 (B:) Adenylylsulfate reductase B subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}	Back information, alignment and structure

>d1xlqa1 d.15.4.1 (A:1-106) 2Fe-2S ferredoxin {Pseudomonas putida, putidaredoxin [TaxId: 303]}	Back information, alignment and structure

>d1v97a2 d.15.4.2 (A:3-92) Xanthine oxidase, N-terminal domain {Cow (Bos taurus) [TaxId: 9913]}	Back information, alignment and structure

>d1blua_ d.58.1.1 (A:) Ferredoxin II {Chromatium vinosum [TaxId: 1049]}	Back information, alignment and structure

>d1vjwa_ d.58.1.4 (A:) Ferredoxin A {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d1rgva_ d.58.1.1 (A:) Ferredoxin II {Thauera aromatica [TaxId: 59405]}	Back information, alignment and structure

>d1fxra_ d.58.1.4 (A:) Ferredoxin I {Sulfate-reducing bacteria (Desulfovibrio africanus) [TaxId: 873]}	Back information, alignment and structure

>d1fxda_ d.58.1.4 (A:) Ferredoxin I {Desulfovibrio gigas [TaxId: 879]}	Back information, alignment and structure

>d1y5ib1 d.58.1.5 (B:1-509) Respiratory nitrate reductase 1 beta chain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1kqfb1 d.58.1.5 (B:2-245) Formate dehydrogenase N, iron-sulfur (beta) subunit {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d2fdna_ d.58.1.1 (A:) Ferredoxin II {Clostridium acidurici [TaxId: 1556]}	Back information, alignment and structure

>d1h98a_ d.58.1.2 (A:) Ferredoxin {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1bc6a_ d.58.1.2 (A:) Ferredoxin {Bacillus schlegelii [TaxId: 1484]}	Back information, alignment and structure

>d1dura_ d.58.1.1 (A:) Ferredoxin II {Peptostreptococcus asaccharolyticus [TaxId: 1258]}	Back information, alignment and structure

>d7fd1a_ d.58.1.2 (A:) Ferredoxin {Azotobacter vinelandii [TaxId: 354]}	Back information, alignment and structure

>d1kf6b2 d.15.4.2 (B:1-105) Fumarate reductase iron-sulfur protein, N-terminal domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1kqfb1 d.58.1.5 (B:2-245) Formate dehydrogenase N, iron-sulfur (beta) subunit {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d2bs2b2 d.15.4.2 (B:1-106) Fumarate reductase iron-sulfur protein, N-terminal domain {Wolinella succinogenes [TaxId: 844]}	Back information, alignment and structure

>d1vlfn2 d.58.1.5 (N:1-195) Transhydroxylase beta subunit, BthL, N-terminal domain {Pelobacter acidigallici [TaxId: 35816]}	Back information, alignment and structure

>d1y5ib1 d.58.1.5 (B:1-509) Respiratory nitrate reductase 1 beta chain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1kf6b1 a.1.2.1 (B:106-243) Fumarate reductase {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1vlfn2 d.58.1.5 (N:1-195) Transhydroxylase beta subunit, BthL, N-terminal domain {Pelobacter acidigallici [TaxId: 35816]}	Back information, alignment and structure

>d2bs2b1 a.1.2.1 (B:107-239) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}	Back information, alignment and structure

>d1nekb2 d.15.4.2 (B:1-106) Succinate dehydogenase iron-sulfur protein, N-terminal domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1nekb1 a.1.2.1 (B:107-238) Succinate dehydogenase {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d3c7bb1 d.58.1.5 (B:197-261) DsrB insert domain {Archaeoglobus fulgidus [TaxId: 2234]}	Back information, alignment and structure

>d1h0hb_ d.58.1.5 (B:) Tungsten containing formate dehydrogenase, small subunit {Desulfovibrio gigas [TaxId: 879]}	Back information, alignment and structure

>d1h0hb_ d.58.1.5 (B:) Tungsten containing formate dehydrogenase, small subunit {Desulfovibrio gigas [TaxId: 879]}	Back information, alignment and structure

>d2ihta1 c.31.1.3 (A:198-374) Carboxyethylarginine synthase {Streptomyces clavuligerus [TaxId: 1901]}	Back information, alignment and structure

>d1ozha1 c.31.1.3 (A:188-366) Catabolic acetolactate synthase {Klebsiella pneumoniae [TaxId: 573]}	Back information, alignment and structure

>d1pvda1 c.31.1.3 (A:182-360) Pyruvate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1ybha1 c.31.1.3 (A:281-459) Acetohydroxyacid synthase catalytic subunit {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]}	Back information, alignment and structure

>d2ez9a1 c.31.1.3 (A:183-365) Pyruvate oxidase {Lactobacillus plantarum [TaxId: 1590]}	Back information, alignment and structure

>d2ji7a1 c.31.1.3 (A:195-369) Oxalyl-CoA decarboxylase {Oxalobacter formigenes [TaxId: 847]}	Back information, alignment and structure

>d1zpda1 c.31.1.3 (A:188-362) Pyruvate decarboxylase {Zymomonas mobilis [TaxId: 542]}	Back information, alignment and structure

>d1q6za1 c.31.1.3 (A:182-341) Benzoylformate decarboxylase {Pseudomonas putida [TaxId: 303]}	Back information, alignment and structure

>d2djia1 c.31.1.3 (A:187-363) Pyruvate oxidase {Aerococcus viridans [TaxId: 1377]}	Back information, alignment and structure

>d1t9ba1 c.31.1.3 (A:290-460) Acetohydroxyacid synthase catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d2iv2x2 c.81.1.1 (X:1-564) Formate dehydrogenase H {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d2gmha3 d.58.1.6 (A:483-584) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}	Back information, alignment and structure

>d1bc6a_ d.58.1.2 (A:) Ferredoxin {Bacillus schlegelii [TaxId: 1484]}	Back information, alignment and structure

>d2fug91 d.58.1.5 (9:26-179) NADH-quinone oxidoreductase chain 9, Nqo9 {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1xera_ d.58.1.3 (A:) Ferredoxin {Archaeon Sulfolobus sp. [TaxId: 2288]}	Back information, alignment and structure

>d1rgva_ d.58.1.1 (A:) Ferredoxin II {Thauera aromatica [TaxId: 59405]}	Back information, alignment and structure

>d1jnrb_ d.58.1.5 (B:) Adenylylsulfate reductase B subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}	Back information, alignment and structure

>d1ovma1 c.31.1.3 (A:181-341) Indole-3-pyruvate decarboxylase {Enterobacter cloacae [TaxId: 550]}	Back information, alignment and structure

>d3c7bb1 d.58.1.5 (B:197-261) DsrB insert domain {Archaeoglobus fulgidus [TaxId: 2234]}	Back information, alignment and structure

>d2fdna_ d.58.1.1 (A:) Ferredoxin II {Clostridium acidurici [TaxId: 1556]}	Back information, alignment and structure

>d1ytla1 c.31.1.6 (A:17-174) Acetyl-CoA decarbonylase/synthase complex epsilon subunit 2, ACDE2 {Archaeoglobus fulgidus [TaxId: 2234]}	Back information, alignment and structure

>d1jb0c_ d.58.1.2 (C:) Photosystem I iron-sulfur protein PsaC {Synechococcus elongatus [TaxId: 32046]}	Back information, alignment and structure

>d2c42a5 d.58.1.5 (A:669-785) Pyruvate-ferredoxin oxidoreductase, PFOR, domain V {Desulfovibrio africanus [TaxId: 873]}	Back information, alignment and structure

>d2jioa2 c.81.1.1 (A:4-600) Periplasmic nitrate reductase alpha chain {Desulfovibrio desulfuricans [TaxId: 876]}	Back information, alignment and structure

>d1blua_ d.58.1.1 (A:) Ferredoxin II {Chromatium vinosum [TaxId: 1049]}	Back information, alignment and structure

>d7fd1a_ d.58.1.2 (A:) Ferredoxin {Azotobacter vinelandii [TaxId: 354]}	Back information, alignment and structure

>d1hfel2 d.58.1.5 (L:2-86) Fe-only hydrogenase larger subunit, N-domain {Desulfovibrio desulfuricans [TaxId: 876]}	Back information, alignment and structure

>d1h98a_ d.58.1.2 (A:) Ferredoxin {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1h0ha2 c.81.1.1 (A:1-812) Tungsten containing formate dehydrogenase, large subunit {Desulfovibrio gigas [TaxId: 879]}	Back information, alignment and structure

>d1ozha1 c.31.1.3 (A:188-366) Catabolic acetolactate synthase {Klebsiella pneumoniae [TaxId: 573]}	Back information, alignment and structure

>d1dura_ d.58.1.1 (A:) Ferredoxin II {Peptostreptococcus asaccharolyticus [TaxId: 1258]}	Back information, alignment and structure

>d2djia1 c.31.1.3 (A:187-363) Pyruvate oxidase {Aerococcus viridans [TaxId: 1377]}	Back information, alignment and structure

>d1gtea5 d.58.1.5 (A:845-1017) Dihydropyrimidine dehydrogenase, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}	Back information, alignment and structure

>d1ybha1 c.31.1.3 (A:281-459) Acetohydroxyacid synthase catalytic subunit {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]}	Back information, alignment and structure

>d1zud21 d.15.3.2 (2:2-66) Thiamin biosynthesis sulfur carrier protein ThiS {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1ogya2 c.81.1.1 (A:12-681) Periplasmic nitrate reductase alpha chain {Rhodobacter sphaeroides [TaxId: 1063]}	Back information, alignment and structure

>d2ez9a1 c.31.1.3 (A:183-365) Pyruvate oxidase {Lactobacillus plantarum [TaxId: 1590]}	Back information, alignment and structure