Citrus Sinensis ID: 004654

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------74
MSLPNKRTASNNNSNNYSPSAMKKAKSQAVACSVDTANKNGLHHDNDAVFDPSSISLDDDLKPDEPRQQAAANLSRKKAQPPQPAKKLVIKLLKAKPTLPTNFEEDTWAKLKLAIKAIFLKQPTSCDLEKLYQAVNDLCLHKMGGNLYQRIEKECEEHISAAIRSLVGQSPDLVVFLSLVERCWQDLCDQMLMIRGIALYLDRTYVKQTPNVRSLWDMGLQLFRKYLSSYSEVEHKTVTGLLRMIERERLGEAVDRTLLNHLLKMFTALGIYSESFEKPFLECTSEFYAAEGMKYMQQSDVPDYLKHVEIRLHEEHERCLLYLDVSTRKPLIATAERQLLERHISAILDKGFTMLMDGHRTEDLQRMYSLFSRVNALESLRQALAMYIRRTGHGIVMDEEKDKDMVSSLLEFKASLDTIWEQSFSKNEAFCNTIKDAFEYLINLRQNRPAELIAKFLDEKLRAGNKGTSEEELEGTLDKVLVLFRFIQGKDVFEAFYKKDLAKRLLLGKSASIDAEKSMISKLKTECGSQFTNKLEGMFKDIELSKEINESFKQSSQARTKLPSGIEMSVHVLTTGYWPTYPPMDVRLPHELNVYQDIFKEFYLSKYSGRRLMWQNSLGHCVLKAEFPKGKKELAVSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLPKGRDVEDDDSFVFNEGFTAPLYRIKVWASVMQQYCDTLSTLDCLICHLDVT
ccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEEccccccccccccccccHHHHHHHHHHHHHHHHcccccEEEEcccccccHHEEEEccccEEEEEcHHHHHHHHHHHccccccHHHHHHHHcccHHHHHHHHHHHHccccEEEEccccccccccccEEEEcccccccccEEEEccccHHHHHcccccccEEEEEEEcc
ccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccccHcHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHcHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccHEEcccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEEEEcccccccccccccccHHHHHHHHHHHHHHHHcccccEEEEEcccccEEEEEEcccccEEEEEHHHHHHHHHHHcccccccHHHHHHHccccHHHHHHHHHHHHHccHHHEEccccccccccccEEEEcccccccEEEEEEcccccccEEEEEccccEEEEEEEcc
mslpnkrtasnnnsnnyspsAMKKAKSQAVACSVDtanknglhhdndavfdpssisldddlkpdepRQQAAANLsrkkaqppqpaKKLVIKLLkakptlptnfeeDTWAKLKLAIKAIFlkqptscdlEKLYQAVNDLCLHKMGGNLYQRIEKECEEHISAAIRSLVGQSPDLVVFLSLVERCWQDLCDQMLMIRGIALYLDrtyvkqtpnvrSLWDMGLQLFRKYLSSYSEVEHKTVTGLLRMIERERLGEAVDRTLLNHLLKMFTALGiysesfekpfleCTSEFYAAEGMkymqqsdvpdyLKHVEIRLHEEHERCLLyldvstrkpLIATAERQLLERHISAILDKGFTMLMDGHRTEDLQRMYSLFSRVNALESLRQALAMYIRRTghgivmdeekDKDMVSSLLEFKASLDTIWEQSFSKNEAFCNTIKDAFEYLINLRQNRPAELIAKFLDEKLragnkgtseeelEGTLDKVLVLFRFIQGKDVFEAFYKKDLAKRLLLGKSASIDAEKSMISKLKTECGSQFTNKLEGMFKDIELSKEINESFKQSSqartklpsgiemSVHVlttgywptyppmdvrlpheLNVYQDIFKEFYLSKYSGRRLMWQNslghcvlkaefpkgkKELAVSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKvrvlqklpkgrdvedddsfvfnegftaplYRIKVWASVMQQYCDTlstldclichldvt
mslpnkrtasnnnsnnysPSAMKKAKSQAVACSVDTANKNGLHHDNDAVFDPSSISLDDDLKPDEPRQQAAAnlsrkkaqppqpaKKLVIKLLKAkptlptnfeEDTWAKLKLAIKAIFLKQPTSCDLEKLYQAVNDLCLHKMGGNLYQRIEKECEEHISAAIRSLVGQSPDLVVFLSLVERCWQDLCDQMLMIRGIALYLDRTYVKQTPNVRSLWDMGLQLFRKYLSSYSEVEHKTVTGLLRMIERERLGEAVDRTLLNHLLKMFTALGIYSESFEKPFLECTSEFYAAEGMKYMQQSDVPDYLKHVEIRLHEEHERCLLYLDVSTRKPLIATAERQLLERHISAILDKGFTMLMDGHRTEDLQRMYSLFSRVNALESLRQALAMYIRRTGHGIVMDEEKDKDMVSSLLEFKASLDTIWEQSFSKNEAFCNTIKDAFEYLINLRQNRPAELIAKFLDEKLRAgnkgtseeelegtlDKVLVLFRFIQGKDVFEAFYKKDLAKRLLLGKSASIDAEKSMISKLKTECGSQFTNKLEGMFKDIELSKEINESFKQssqartklpsgiEMSVHVLTTGYWPTYPPMDVRLPHELNVYQDIFKEFYLSKYSGRRLMWQNSLGHCVLKAEFPKGKKELAVSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRtlqslacgkvrvlqklpkgrdvedddsfVFNEGFTAPLYRIKVWASVMQQYCDTLSTLDCLICHLDVT
MSLPNKRTAsnnnsnnyspsAMKKAKSQAVACSVDTANKNGLHHDNDAVFDPSSISLDDDLKPDEPRQQAAANLSRkkaqppqpakklvikllkakPTLPTNFEEDTWaklklaikaiflkQPTSCDLEKLYQAVNDLCLHKMGGNLYQRIEKECEEHISAAIRSLVGQSPDLVVFLSLVERCWQDLCDQMLMIRGIALYLDRTYVKQTPNVRSLWDMGLQLFRKYLSSYSEVEHKTVTGLLRMIERERLGEAVDRTLLNHLLKMFTALGIYSESFEKPFLECTSEFYAAEGMKYMQQSDVPDYLKHVEIRLHEEHERCLLYLDVSTRKPLIATAERQLLERHISAILDKGFTMLMDGHRTEDLQRMYSLFSRVNALESLRQALAMYIRRTGHGIVMDEEKDKDMVSSLLEFKASLDTIWEQSFSKNEAFCNTIKDAFEYLINLRQNRPAELIAKFLDEKLRAGNKGTSEEELEGTLDKVLVLFRFIQGKDVFEAFYKKDLAKRLLLGKSASIDAEKSMISKLKTECGSQFTNKLEGMFKDIELSKEINESFKQSSQARTKLPSGIEMSVHVLTTGYWPTYPPMDVRLPHELNVYQDIFKEFYLSKYSGRRLMWQNSLGHCVLKAEFPKGKKELAVSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLPKGRDVEDDDSFVFNEGFTAPLYRIKVWASVMQQYCDTLSTLDCLICHLDVT
***************************************************************************************LVIKLLKAKPTLPTNFEEDTWAKLKLAIKAIFLKQPTSCDLEKLYQAVNDLCLHKMGGNLYQRIEKECEEHISAAIRSLVGQSPDLVVFLSLVERCWQDLCDQMLMIRGIALYLDRTYVKQTPNVRSLWDMGLQLFRKYLSSYSEVEHKTVTGLLRMIERERLGEAVDRTLLNHLLKMFTALGIYSESFEKPFLECTSEFYAAEGMKYMQQSDVPDYLKHVEIRLHEEHERCLLYLDVSTRKPLIATAERQLLERHISAILDKGFTMLMDGHRTEDLQRMYSLFSRVNALESLRQALAMYIRRTGHGIVMDEEKDKDMVSSLLEFKASLDTIWEQSFSKNEAFCNTIKDAFEYLINLRQNRPAELIAKFLDEKL************EGTLDKVLVLFRFIQGKDVFEAFYKKDLAKRLLLGKSASI****************************************************IEMSVHVLTTGYWPTYPPMDVRLPHELNVYQDIFKEFYLSKYSGRRLMWQNSLGHCVLKAEFPKGKKELAVSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLPKGRDVEDDDSFVFNEGFTAPLYRIKVWASVMQQYCDTLSTLDCLICHLD**
*****************************************************************************************************NFEEDTWAKLKLAIKAIFLKQPTSCDLEKLYQAVNDLCLHKMGGNLYQRIEKECEEHISAAIRSLVGQSPDLVVFLSLVERCWQDLCDQMLMIRGIALYLDRTYVKQTPNVRSLWDMGLQLFRKYLSSYSEVEHKTVTGLLRMIERERLGEAVDRTLLNHLLKMFTALGIYSESFEKPFLECTSEFYAAEGMKYMQQSDVPDYLKHVEIRLHEEHERCLLYLDVSTRKPLIATAERQLLERHISAILDKGFTMLMDGHRTEDLQRMYSLFSRVNALESLRQALAMYIRRTGHGIVMDEEKDKDMVSSLLEFKASLDTIWEQSFSKNEAFCNTIKDAFEYLINLRQNRPAELIAKFLDEKL**************TLDKVLVLFRFIQGKDVFEAFYKKDLAKRLLL*****IDAEKSMISKLKTECGSQFTNKLEGMFKDIELSKEINESFKQSSQARTKLPSGIEMSVHVLTTGYWPTYPPMDVRLPHELNVYQDIFKEFYLSKYSGRRLMWQNSLGHCVLKAEFPKGKKELAVSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKL*****VEDDDSFVFNEGFTAPLYRIKV**************LDCLICHLDVT
******************************ACSVDTANKNGLHHDNDAVFDPSSISLDDDLK***********************KKLVIKLLKAKPTLPTNFEEDTWAKLKLAIKAIFLKQPTSCDLEKLYQAVNDLCLHKMGGNLYQRIEKECEEHISAAIRSLVGQSPDLVVFLSLVERCWQDLCDQMLMIRGIALYLDRTYVKQTPNVRSLWDMGLQLFRKYLSSYSEVEHKTVTGLLRMIERERLGEAVDRTLLNHLLKMFTALGIYSESFEKPFLECTSEFYAAEGMKYMQQSDVPDYLKHVEIRLHEEHERCLLYLDVSTRKPLIATAERQLLERHISAILDKGFTMLMDGHRTEDLQRMYSLFSRVNALESLRQALAMYIRRTGHGIVMDEEKDKDMVSSLLEFKASLDTIWEQSFSKNEAFCNTIKDAFEYLINLRQNRPAELIAKFLDEKLRAGN********EGTLDKVLVLFRFIQGKDVFEAFYKKDLAKRLLLGKSASIDAEKSMISKLKTECGSQFTNKLEGMFKDIELSKEINE***********LPSGIEMSVHVLTTGYWPTYPPMDVRLPHELNVYQDIFKEFYLSKYSGRRLMWQNSLGHCVLKAEFPKGKKELAVSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLPKGRDVEDDDSFVFNEGFTAPLYRIKVWASVMQQYCDTLSTLDCLICHLDVT
************************************************************************************AKKLVIKLLKAKPTLPTNFEEDTWAKLKLAIKAIFLKQPTSCDLEKLYQAVNDLCLHKMGGNLYQRIEKECEEHISAAIRSLVGQSPDLVVFLSLVERCWQDLCDQMLMIRGIALYLDRTYVKQTPNVRSLWDMGLQLFRKYLSSYSEVEHKTVTGLLRMIERERLGEAVDRTLLNHLLKMFTALGIYSESFEKPFLECTSEFYAAEGMKYMQQSDVPDYLKHVEIRLHEEHERCLLYLDVSTRKPLIATAERQLLERHISAILDKGFTMLMDGHRTEDLQRMYSLFSRVNALESLRQALAMYIRRTGHGIVMDEEKDKDMVSSLLEFKASLDTIWEQSFSKNEAFCNTIKDAFEYLINLRQNRPAELIAKFLDEKLRAGNKGTSEEELEGTLDKVLVLFRFIQGKDVFEAFYKKDLAKRLLLGKSASIDAEKSMISKLKTECGSQFTNKLEGMFKDIELSKEINESFKQSSQARTKLPSGIEMSVHVLTTGYWPTYPPMDVRLPHELNVYQDIFKEFYLSKYSGRRLMWQNSLGHCVLKAEFPKGKKELAVSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLPKGRDVEDDDSFVFNEGFTAPLYRIKVWASVMQQYCDTLSTLDCLICHLDVT
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSLPNKRTASNNNSNNYSPSAMKKAKSQAVACSVDTANKNGLHHDNDAVFDPSSISLDDDLKPDEPRQQAAANLSRKKAQPPQPAKKLVIKLLKAKPTLPTNFEEDTWAKLKLAIKAIFLKQPTSCDLEKLYQAVNDLCLHKMGGNLYQRIEKECEEHISAAIRSLVGQSPDLVVFLSLVERCWQDLCDQMLMIRGIALYLDRTYVKQTPNVRSLWDMGLQLFRKYLSSYSEVEHKTVTGLLRMIERERLGEAVDRTLLNHLLKMFTALGIYSESFEKPFLECTSEFYAAEGMKYMQQSDVPDYLKHVEIRLHEEHERCLLYLDVSTRKPLIATAERQLLERHISAILDKGFTMLMDGHRTEDLQRMYSLFSRVNALESLRQALAMYIRRTGHGIVMDEEKDKDMVSSLLEFKASLDTIWEQSFSKNEAFCNTIKDAFEYLINLRQNRPAELIAKFLDEKLRAGNKGTSEEELEGTLDKVLVLFRFIQGKDVFEAFYKKDLAKRLLLGKSASIDAEKSMISKLKTECGSQFTNKLEGMFKDIELSKEINESFKQSSQARTKLPSGIEMSVHVLTTGYWPTYPPMDVRLPHELNVYQDIFKEFYLSKYSGRRLMWQNSLGHCVLKAEFPKGKKELAVSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLPKGRDVEDDDSFVFNEGFTAPLYRIKVWASVMQQYCDTLSTLDCLICHLDVT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query739 2.2.26 [Sep-21-2011]
Q8LGH4792 Cullin-4 OS=Arabidopsis t yes no 0.958 0.893 0.778 0.0
Q13620913 Cullin-4B OS=Homo sapiens yes no 0.855 0.692 0.575 0.0
A2A432970 Cullin-4B OS=Mus musculus yes no 0.855 0.651 0.574 0.0
Q13619759 Cullin-4A OS=Homo sapiens no no 0.849 0.827 0.569 0.0
Q3TCH7759 Cullin-4A OS=Mus musculus no no 0.856 0.833 0.560 0.0
Q54CS2802 Cullin-4 OS=Dictyostelium yes no 0.872 0.804 0.463 1e-170
Q54NZ5769 Cullin-3 OS=Dictyostelium no no 0.856 0.823 0.395 1e-131
Q9C9L0732 Cullin-3B OS=Arabidopsis no no 0.855 0.863 0.387 1e-128
Q9ZVH4732 Cullin-3A OS=Arabidopsis no no 0.851 0.859 0.390 1e-128
Q6GPF3768 Cullin-3-B OS=Xenopus lae N/A no 0.847 0.815 0.392 1e-127
>sp|Q8LGH4|CUL4_ARATH Cullin-4 OS=Arabidopsis thaliana GN=CUL4 PE=1 SV=1 Back     alignment and function desciption
 Score = 1113 bits (2878), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 567/728 (77%), Positives = 617/728 (84%), Gaps = 20/728 (2%)

Query: 1   MSLPNKRTA----SNNNSNNYSPSAMKKAKSQAVACSVDTANKNGLHHDNDAVFDPSSIS 56
           MSLP KR+     S ++ ++YS   MKKAK             N LHH       P++  
Sbjct: 1   MSLPTKRSTFSAASASDDSSYSSPPMKKAK-------------NDLHHSPQ---HPNTAD 44

Query: 57  LDDDLKPDEPRQQAAANLSRKKAQPPQPAKKLVIKLLKAKPTLPTNFEEDTWAKLKLAIK 116
                  +E    AAANLSRKKA  PQP KK VIKL KAKPTLPTNFEE+TW KL+ AI+
Sbjct: 45  KVVGFHMEEDPTPAAANLSRKKATLPQPTKKFVIKLNKAKPTLPTNFEENTWEKLQSAIR 104

Query: 117 AIFLKQPTSCDLEKLYQAVNDLCLHKMGGNLYQRIEKECEEHISAAIRSLVGQSPDLVVF 176
           AIFLK+  S DLE LYQAV++LCLHK+ G LY +IEKECEEHISAA++SLVGQ+ DL VF
Sbjct: 105 AIFLKKKISFDLESLYQAVDNLCLHKLDGKLYDQIEKECEEHISAALQSLVGQNTDLTVF 164

Query: 177 LSLVERCWQDLCDQMLMIRGIALYLDRTYVKQTPNVRSLWDMGLQLFRKYLSSYSEVEHK 236
           LS VE+CWQD CDQMLMIR IAL LDR YV Q PNVRSLW+MGLQLFRK+LS   EVE +
Sbjct: 165 LSRVEKCWQDFCDQMLMIRSIALTLDRKYVIQNPNVRSLWEMGLQLFRKHLSLAPEVEQR 224

Query: 237 TVTGLLRMIERERLGEAVDRTLLNHLLKMFTALGIYSESFEKPFLECTSEFYAAEGMKYM 296
           TV GLL MIE+ERL EAV+RTLL+HLLKMFTALGIY ESFEKPFLE TSEFYAAEGMKYM
Sbjct: 225 TVKGLLSMIEKERLAEAVNRTLLSHLLKMFTALGIYMESFEKPFLEGTSEFYAAEGMKYM 284

Query: 297 QQSDVPDYLKHVEIRLHEEHERCLLYLDVSTRKPLIATAERQLLERHISAILDKGFTMLM 356
           QQSDVP+YLKHVE RLHEE+ERC+LY+D  TRKPLI T ERQLLERHI  +L+KGFT LM
Sbjct: 285 QQSDVPEYLKHVEGRLHEENERCILYIDAVTRKPLITTVERQLLERHILVVLEKGFTTLM 344

Query: 357 DGHRTEDLQRMYSLFSRVNALESLRQALAMYIRRTGHGIVMDEEKDKDMVSSLLEFKASL 416
           DG RTEDLQRM +LFSRVNALESLRQAL+ Y+R+TG  IVMDEEKDKDMV SLL+FKASL
Sbjct: 345 DGRRTEDLQRMQTLFSRVNALESLRQALSSYVRKTGQKIVMDEEKDKDMVQSLLDFKASL 404

Query: 417 DTIWEQSFSKNEAFCNTIKDAFEYLINLRQNRPAELIAKFLDEKLRAGNKGTSEEELEGT 476
           D IWE+SF KNE+F NTIKD+FE+LINLRQNRPAELIAKFLDEKLRAGNKGTSEEELE  
Sbjct: 405 DIIWEESFYKNESFGNTIKDSFEHLINLRQNRPAELIAKFLDEKLRAGNKGTSEEELESV 464

Query: 477 LDKVLVLFRFIQGKDVFEAFYKKDLAKRLLLGKSASIDAEKSMISKLKTECGSQFTNKLE 536
           L+KVLVLFRFIQGKDVFEAFYKKDLAKRLLLGKSASIDAEKSMISKLKTECGSQFTNKLE
Sbjct: 465 LEKVLVLFRFIQGKDVFEAFYKKDLAKRLLLGKSASIDAEKSMISKLKTECGSQFTNKLE 524

Query: 537 GMFKDIELSKEINESFKQSSQARTKLPSGIEMSVHVLTTGYWPTYPPMDVRLPHELNVYQ 596
           GMFKDIELSKEINESFKQSSQARTKLPSGIEMSVHVLTTGYWPTYPPMDV+LPHELNVYQ
Sbjct: 525 GMFKDIELSKEINESFKQSSQARTKLPSGIEMSVHVLTTGYWPTYPPMDVKLPHELNVYQ 584

Query: 597 DIFKEFYLSKYSGRRLMWQNSLGHCVLKAEFPKGKKELAVSLFQTVVLMLFNDAQKLSFQ 656
           DIFKEFYLSKYSGRRLMWQNSLGHCVLKA+F KGKKELAVSLFQ VVLMLFNDA KLSF+
Sbjct: 585 DIFKEFYLSKYSGRRLMWQNSLGHCVLKADFSKGKKELAVSLFQAVVLMLFNDAMKLSFE 644

Query: 657 DIKDATGIEDKELRRTLQSLACGKVRVLQKLPKGRDVEDDDSFVFNEGFTAPLYRIKVWA 716
           DIKD+T IEDKELRRTLQSLACGKVRVLQK PKGRDVED D F FN+ F APLYRIKV A
Sbjct: 645 DIKDSTSIEDKELRRTLQSLACGKVRVLQKNPKGRDVEDGDEFEFNDEFAAPLYRIKVNA 704

Query: 717 SVMQQYCD 724
             M++  +
Sbjct: 705 IQMKETVE 712
Component of the CUL4-RBX1-CDD (COP10-DDB1a-DET1) E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. Participates in the CDD complex to light-mediated control of development. May repress photomorphogenesis through enhancing COP1 E3 ubiquitin-protein ligase activity. Acts together with the CUL4-DDB1-COP1-SPA E3 ubiquitin-protein ligase complexes in the repression of photomorphogenesis and flowering time. Component ot the CUL4-RBX1-DDB1-PRL1 E3 ubiquitin-protein ligase complex which mediates ubiquitination and subsequent degradation of AKIN10. Component of the CUL4-RBX1-DDB1-DWA1/DWA2 E3 ubiquitin-protein ligase complex that acts as negative regulator in abscisic acid (ABA) signaling and may target ABI5 for degradation.
Arabidopsis thaliana (taxid: 3702)
>sp|Q13620|CUL4B_HUMAN Cullin-4B OS=Homo sapiens GN=CUL4B PE=1 SV=4 Back     alignment and function description
>sp|A2A432|CUL4B_MOUSE Cullin-4B OS=Mus musculus GN=Cul4b PE=1 SV=1 Back     alignment and function description
>sp|Q13619|CUL4A_HUMAN Cullin-4A OS=Homo sapiens GN=CUL4A PE=1 SV=3 Back     alignment and function description
>sp|Q3TCH7|CUL4A_MOUSE Cullin-4A OS=Mus musculus GN=Cul4a PE=1 SV=1 Back     alignment and function description
>sp|Q54CS2|CUL4_DICDI Cullin-4 OS=Dictyostelium discoideum GN=culD PE=3 SV=1 Back     alignment and function description
>sp|Q54NZ5|CUL3_DICDI Cullin-3 OS=Dictyostelium discoideum GN=culC PE=3 SV=1 Back     alignment and function description
>sp|Q9C9L0|CUL3B_ARATH Cullin-3B OS=Arabidopsis thaliana GN=CUL3B PE=1 SV=1 Back     alignment and function description
>sp|Q9ZVH4|CUL3A_ARATH Cullin-3A OS=Arabidopsis thaliana GN=CUL3A PE=1 SV=1 Back     alignment and function description
>sp|Q6GPF3|CUL3B_XENLA Cullin-3-B OS=Xenopus laevis GN=cul3b PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query739
255557289807 cullin, putative [Ricinus communis] gi|2 0.972 0.890 0.875 0.0
359483875828 PREDICTED: cullin-4 [Vitis vinifera] 0.970 0.865 0.859 0.0
297740729802 unnamed protein product [Vitis vinifera] 0.944 0.870 0.882 0.0
224116118811 predicted protein [Populus trichocarpa] 0.972 0.886 0.869 0.0
224077640785 predicted protein [Populus trichocarpa] 0.947 0.891 0.884 0.0
356555528788 PREDICTED: cullin-4-like [Glycine max] 0.947 0.888 0.878 0.0
147775823806 hypothetical protein VITISV_010491 [Viti 0.943 0.864 0.871 0.0
350538715785 cullin 4 [Solanum lycopersicum] gi|15989 0.945 0.890 0.870 0.0
449463897833 PREDICTED: cullin-4-like [Cucumis sativu 0.940 0.834 0.865 0.0
449506653833 PREDICTED: LOW QUALITY PROTEIN: cullin-4 0.940 0.834 0.864 0.0
>gi|255557289|ref|XP_002519675.1| cullin, putative [Ricinus communis] gi|223541092|gb|EEF42648.1| cullin, putative [Ricinus communis] Back     alignment and taxonomy information
 Score = 1313 bits (3399), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 656/749 (87%), Positives = 680/749 (90%), Gaps = 30/749 (4%)

Query: 1   MSLPNKRTASNNNS--------NNYSPSAMKKAKSQAV-ACSV--DTANKNGLHH----- 44
           MSLP KR+A+  +S        N++ P  MKKAKSQAV ACS    T NKNG+HH     
Sbjct: 1   MSLPTKRSATATSSSSTSSAAANSFPP--MKKAKSQAVSACSPLDTTTNKNGIHHFNPST 58

Query: 45  ----DNDAVFDPSSI--------SLDDDLKPDEPRQQAAANLSRKKAQPPQPAKKLVIKL 92
               +ND VFDPSS+          DD  +       AAANLSRKKA PPQPAKKLVIKL
Sbjct: 59  TAAAENDVVFDPSSMMSLDDDPKLDDDHHRSHHHHPPAAANLSRKKATPPQPAKKLVIKL 118

Query: 93  LKAKPTLPTNFEEDTWAKLKLAIKAIFLKQPTSCDLEKLYQAVNDLCLHKMGGNLYQRIE 152
           +KAKPTLP NFEEDTWAKL+ AIKAIFLKQP SCDLEKLYQAVNDLCLHKMGGNLYQ+IE
Sbjct: 119 VKAKPTLPINFEEDTWAKLQSAIKAIFLKQPDSCDLEKLYQAVNDLCLHKMGGNLYQQIE 178

Query: 153 KECEEHISAAIRSLVGQSPDLVVFLSLVERCWQDLCDQMLMIRGIALYLDRTYVKQTPNV 212
           KECE HISAA+RSLVGQSPDLVVFLSLVERCWQDLCDQMLMIRGIALYLDRTYVKQTPNV
Sbjct: 179 KECEAHISAALRSLVGQSPDLVVFLSLVERCWQDLCDQMLMIRGIALYLDRTYVKQTPNV 238

Query: 213 RSLWDMGLQLFRKYLSSYSEVEHKTVTGLLRMIERERLGEAVDRTLLNHLLKMFTALGIY 272
           RSLWDMGLQLFRK+LS   EVEHKTVTGLLRMIE ERLGEAVDRTLLNHLLKMFTALGIY
Sbjct: 239 RSLWDMGLQLFRKHLSLSPEVEHKTVTGLLRMIESERLGEAVDRTLLNHLLKMFTALGIY 298

Query: 273 SESFEKPFLECTSEFYAAEGMKYMQQSDVPDYLKHVEIRLHEEHERCLLYLDVSTRKPLI 332
           +ESFE+PFLECTSEFYAAEGMKYMQQSDVPDYLKHVEIRLHEEHERCLLYLD STRKPLI
Sbjct: 299 AESFERPFLECTSEFYAAEGMKYMQQSDVPDYLKHVEIRLHEEHERCLLYLDASTRKPLI 358

Query: 333 ATAERQLLERHISAILDKGFTMLMDGHRTEDLQRMYSLFSRVNALESLRQALAMYIRRTG 392
           ATAERQLLERHISAILDKGF MLMDGHR EDL+RMYSLFSRVNALESLRQAL+ YIRR G
Sbjct: 359 ATAERQLLERHISAILDKGFMMLMDGHRIEDLKRMYSLFSRVNALESLRQALSSYIRRAG 418

Query: 393 HGIVMDEEKDKDMVSSLLEFKASLDTIWEQSFSKNEAFCNTIKDAFEYLINLRQNRPAEL 452
             +VMDEEKDKDMVSSLLEFKASLDTIWE+SFSKNEAFCNTIKDAFE+LIN+RQNRPAEL
Sbjct: 419 QAVVMDEEKDKDMVSSLLEFKASLDTIWEESFSKNEAFCNTIKDAFEHLINMRQNRPAEL 478

Query: 453 IAKFLDEKLRAGNKGTSEEELEGTLDKVLVLFRFIQGKDVFEAFYKKDLAKRLLLGKSAS 512
           IAKFLDEKLRAGNKGTSEEELEGTLDKVLVLFRFIQGKDVFEAFYKKDLAKRLLLGKSAS
Sbjct: 479 IAKFLDEKLRAGNKGTSEEELEGTLDKVLVLFRFIQGKDVFEAFYKKDLAKRLLLGKSAS 538

Query: 513 IDAEKSMISKLKTECGSQFTNKLEGMFKDIELSKEINESFKQSSQARTKLPSGIEMSVHV 572
           IDAEKSMISKLKTECGSQFTNKLEGMFKDIELSKEINESFKQSSQARTKLPSGIEMSVHV
Sbjct: 539 IDAEKSMISKLKTECGSQFTNKLEGMFKDIELSKEINESFKQSSQARTKLPSGIEMSVHV 598

Query: 573 LTTGYWPTYPPMDVRLPHELNVYQDIFKEFYLSKYSGRRLMWQNSLGHCVLKAEFPKGKK 632
           LTTGYWPTYPPMDVRLPHELNVYQDIFKEFYLSKYSGRRLMWQNSLGHCVLKAEF KGKK
Sbjct: 599 LTTGYWPTYPPMDVRLPHELNVYQDIFKEFYLSKYSGRRLMWQNSLGHCVLKAEFSKGKK 658

Query: 633 ELAVSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLPKGRD 692
           ELAVSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLPKGRD
Sbjct: 659 ELAVSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLPKGRD 718

Query: 693 VEDDDSFVFNEGFTAPLYRIKVWASVMQQ 721
           VEDDDSFVFNEGFTAPLYRIKV A  M++
Sbjct: 719 VEDDDSFVFNEGFTAPLYRIKVNAIQMKE 747

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359483875|ref|XP_002270764.2| PREDICTED: cullin-4 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297740729|emb|CBI30911.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224116118|ref|XP_002332001.1| predicted protein [Populus trichocarpa] gi|222874769|gb|EEF11900.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224077640|ref|XP_002305340.1| predicted protein [Populus trichocarpa] gi|222848304|gb|EEE85851.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356555528|ref|XP_003546083.1| PREDICTED: cullin-4-like [Glycine max] Back     alignment and taxonomy information
>gi|147775823|emb|CAN75926.1| hypothetical protein VITISV_010491 [Vitis vinifera] Back     alignment and taxonomy information
>gi|350538715|ref|NP_001234356.1| cullin 4 [Solanum lycopersicum] gi|159895408|gb|ABX09988.1| cullin 4 [Solanum lycopersicum] Back     alignment and taxonomy information
>gi|449463897|ref|XP_004149667.1| PREDICTED: cullin-4-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449506653|ref|XP_004162809.1| PREDICTED: LOW QUALITY PROTEIN: cullin-4-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query739
TAIR|locus:2162060792 CUL4 "cullin4" [Arabidopsis th 0.959 0.895 0.744 2.9e-277
UNIPROTKB|E1BQK9884 CUL4B "Uncharacterized protein 0.836 0.699 0.565 1e-185
UNIPROTKB|K4DI93900 CUL4B "Cullin 4B, isoform CRA_ 0.834 0.685 0.563 1.5e-184
UNIPROTKB|Q13620913 CUL4B "Cullin-4B" [Homo sapien 0.834 0.675 0.563 1.5e-184
UNIPROTKB|E1BFD5965 CUL4B "Uncharacterized protein 0.834 0.639 0.563 2e-184
MGI|MGI:1919834970 Cul4b "cullin 4B" [Mus musculu 0.834 0.636 0.562 2e-184
UNIPROTKB|E2RMN1982 CUL4B "Uncharacterized protein 0.834 0.628 0.562 3.2e-184
ZFIN|ZDB-GENE-041008-208885 cul4b "cullin 4B" [Danio rerio 0.834 0.697 0.566 2.9e-183
UNIPROTKB|F1P2U1741 CUL4A "Uncharacterized protein 0.834 0.832 0.557 1.4e-181
UNIPROTKB|Q13619759 CUL4A "Cullin-4A" [Homo sapien 0.833 0.811 0.564 2.3e-181
TAIR|locus:2162060 CUL4 "cullin4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2665 (943.2 bits), Expect = 2.9e-277, P = 2.9e-277
 Identities = 537/721 (74%), Positives = 581/721 (80%)

Query:     1 MSLPNKRTAXXXXXXXXXXXAMKKAKSQAVACSVDTANKNGLHHDNDAVFDPSSISLDDD 60
             MSLP KR+                   +A         KN LHH       P++      
Sbjct:     1 MSLPTKRSTFSAASASDDSSYSSPPMKKA---------KNDLHHSPQ---HPNTADKVVG 48

Query:    61 LKPDEPRQQAAANLSRXXXXXXXXXXXXXXXXXXXXPTLPTNFEEDTWXXXXXXXXXXXX 120
                +E    AAANLSR                    PTLPTNFEE+TW            
Sbjct:    49 FHMEEDPTPAAANLSRKKATLPQPTKKFVIKLNKAKPTLPTNFEENTWEKLQSAIRAIFL 108

Query:   121 XQPTSCDLEKLYQAVNDLCLHKMGGNLYQRIEKECEEHISAAIRSLVGQSPDLVVFLSLV 180
              +  S DLE LYQAV++LCLHK+ G LY +IEKECEEHISAA++SLVGQ+ DL VFLS V
Sbjct:   109 KKKISFDLESLYQAVDNLCLHKLDGKLYDQIEKECEEHISAALQSLVGQNTDLTVFLSRV 168

Query:   181 ERCWQDLCDQMLMIRGIALYLDRTYVKQTPNVRSLWDMGLQLFRKYLSSYSEVEHKTVTG 240
             E+CWQD CDQMLMIR IAL LDR YV Q PNVRSLW+MGLQLFRK+LS   EVE +TV G
Sbjct:   169 EKCWQDFCDQMLMIRSIALTLDRKYVIQNPNVRSLWEMGLQLFRKHLSLAPEVEQRTVKG 228

Query:   241 LLRMIERERLGEAVDRTLLNHLLKMFTALGIYSESFEKPFLECTSEFYAAEGMKYMQQSD 300
             LL MIE+ERL EAV+RTLL+HLLKMFTALGIY ESFEKPFLE TSEFYAAEGMKYMQQSD
Sbjct:   229 LLSMIEKERLAEAVNRTLLSHLLKMFTALGIYMESFEKPFLEGTSEFYAAEGMKYMQQSD 288

Query:   301 VPDYLKHVEIRLHEEHERCLLYLDVSTRKPLIATAERQLLERHISAILDKGFTMLMDGHR 360
             VP+YLKHVE RLHEE+ERC+LY+D  TRKPLI T ERQLLERHI  +L+KGFT LMDG R
Sbjct:   289 VPEYLKHVEGRLHEENERCILYIDAVTRKPLITTVERQLLERHILVVLEKGFTTLMDGRR 348

Query:   361 TEDLQRMYSLFSRVNALESLRQALAMYIRRTGHGIVMDEEKDKDMVSSLLEFKASLDTIW 420
             TEDLQRM +LFSRVNALESLRQAL+ Y+R+TG  IVMDEEKDKDMV SLL+FKASLD IW
Sbjct:   349 TEDLQRMQTLFSRVNALESLRQALSSYVRKTGQKIVMDEEKDKDMVQSLLDFKASLDIIW 408

Query:   421 EQSFSKNEAFCNTIKDAFEYLINLRQNRPAELIAKFLDEKLRAGNKGTSEEELEGTLDKV 480
             E+SF KNE+F NTIKD+FE+LINLRQNRPAELIAKFLDEKLRAGNKGTSEEELE  L+KV
Sbjct:   409 EESFYKNESFGNTIKDSFEHLINLRQNRPAELIAKFLDEKLRAGNKGTSEEELESVLEKV 468

Query:   481 LVLFRFIQGKDVFEAFYKKDLAKRLLLGKSASIDAEKSMISKLKTECGSQFTNKLEGMFK 540
             LVLFRFIQGKDVFEAFYKKDLAKRLLLGKSASIDAEKSMISKLKTECGSQFTNKLEGMFK
Sbjct:   469 LVLFRFIQGKDVFEAFYKKDLAKRLLLGKSASIDAEKSMISKLKTECGSQFTNKLEGMFK 528

Query:   541 DIELSKEINESFKQSSQARTKLPSGIEMSVHVLTTGYWPTYPPMDVRLPHELNVYQDIFK 600
             DIELSKEINESFKQSSQARTKLPSGIEMSVHVLTTGYWPTYPPMDV+LPHELNVYQDIFK
Sbjct:   529 DIELSKEINESFKQSSQARTKLPSGIEMSVHVLTTGYWPTYPPMDVKLPHELNVYQDIFK 588

Query:   601 EFYLSKYSGRRLMWQNSLGHCVLKAEFPKGKKELAVSLFQTVVLMLFNDAQKLSFQDIKD 660
             EFYLSKYSGRRLMWQNSLGHCVLKA+F KGKKELAVSLFQ VVLMLFNDA KLSF+DIKD
Sbjct:   589 EFYLSKYSGRRLMWQNSLGHCVLKADFSKGKKELAVSLFQAVVLMLFNDAMKLSFEDIKD 648

Query:   661 ATGIEDKELRRTLQSLACGKVRVLQKLPKGRDVEDDDSFVFNEGFTAPLYRIKVWASVMQ 720
             +T IEDKELRRTLQSLACGKVRVLQK PKGRDVED D F FN+ F APLYRIKV A  M+
Sbjct:   649 STSIEDKELRRTLQSLACGKVRVLQKNPKGRDVEDGDEFEFNDEFAAPLYRIKVNAIQMK 708

Query:   721 Q 721
             +
Sbjct:   709 E 709
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0031461 "cullin-RING ubiquitin ligase complex" evidence=IEA
GO:0031625 "ubiquitin protein ligase binding" evidence=IEA
GO:0005515 "protein binding" evidence=IPI
GO:0009640 "photomorphogenesis" evidence=RCA;IMP
GO:0048366 "leaf development" evidence=RCA;IMP
GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=IPI
GO:0000151 "ubiquitin ligase complex" evidence=IPI
GO:0000209 "protein polyubiquitination" evidence=IDA
GO:0009908 "flower development" evidence=IMP
GO:0010100 "negative regulation of photomorphogenesis" evidence=RCA;IMP
GO:0048367 "shoot system development" evidence=IMP
GO:0009755 "hormone-mediated signaling pathway" evidence=RCA;IMP
GO:0010154 "fruit development" evidence=IMP
GO:0010182 "sugar mediated signaling pathway" evidence=RCA;IMP
GO:0048825 "cotyledon development" evidence=RCA;IMP
GO:0006281 "DNA repair" evidence=RCA;IMP
GO:0048575 "short-day photoperiodism, flowering" evidence=IMP
GO:0005829 "cytosol" evidence=IDA
GO:0000278 "mitotic cell cycle" evidence=RCA
GO:0006396 "RNA processing" evidence=RCA
GO:0007062 "sister chromatid cohesion" evidence=RCA
GO:0009793 "embryo development ending in seed dormancy" evidence=RCA
GO:0009845 "seed germination" evidence=RCA
GO:0009880 "embryonic pattern specification" evidence=RCA
GO:0009909 "regulation of flower development" evidence=RCA
GO:0009933 "meristem structural organization" evidence=RCA
GO:0010072 "primary shoot apical meristem specification" evidence=RCA
GO:0010162 "seed dormancy process" evidence=RCA
GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA
GO:0010431 "seed maturation" evidence=RCA
GO:0010564 "regulation of cell cycle process" evidence=RCA
GO:0016567 "protein ubiquitination" evidence=RCA
GO:0019915 "lipid storage" evidence=RCA
GO:0045595 "regulation of cell differentiation" evidence=RCA
GO:0048608 "reproductive structure development" evidence=RCA
GO:0050826 "response to freezing" evidence=RCA
GO:0051301 "cell division" evidence=RCA
UNIPROTKB|E1BQK9 CUL4B "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|K4DI93 CUL4B "Cullin 4B, isoform CRA_e" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q13620 CUL4B "Cullin-4B" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E1BFD5 CUL4B "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
MGI|MGI:1919834 Cul4b "cullin 4B" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|E2RMN1 CUL4B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-041008-208 cul4b "cullin 4B" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1P2U1 CUL4A "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q13619 CUL4A "Cullin-4A" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q13620CUL4B_HUMANNo assigned EC number0.57570.85520.6922yesno
Q54CS2CUL4_DICDINo assigned EC number0.46350.87280.8042yesno
O14122CUL4_SCHPONo assigned EC number0.31800.84300.8487yesno
Q8LGH4CUL4_ARATHNo assigned EC number0.77880.95800.8939yesno
A2A432CUL4B_MOUSENo assigned EC number0.57410.85520.6515yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
cul4
SubName- Full=Chromosome chr10 scaffold_43, whole genome shotgun sequence; (802 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00028385001
SubName- Full=Chromosome chr10 scaffold_43, whole genome shotgun sequence; (1089 aa)
    • • 0.735
GSVIVG00035351001
SubName- Full=Chromosome undetermined scaffold_77, whole genome shotgun sequence; (1219 aa)
    • • 0.581
GSVIVG00036331001
SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (329 aa)
    • • 0.534
GSVIVG00016431001
SubName- Full=Putative uncharacterized protein (Chromosome chr11 scaffold_13, whole genome shot [...] (120 aa)
    • • 0.494
26N20_20
SubName- Full=Chromosome chr8 scaffold_68, whole genome shotgun sequence; (551 aa)
      • 0.483
GSVIVG00034065001
SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (122 aa)
    • • 0.465
GSVIVG00023341001
SubName- Full=Chromosome chr8 scaffold_29, whole genome shotgun sequence; (433 aa)
   •• • 0.446

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query739
pfam00888603 pfam00888, Cullin, Cullin family 0.0
COG5647773 COG5647, COG5647, Cullin, a subunit of E3 ubiquiti 1e-126
smart00182143 smart00182, CULLIN, Cullin 2e-57
>gnl|CDD|216175 pfam00888, Cullin, Cullin family Back     alignment and domain information 
 Score =  630 bits (1627), Expect = 0.0
 Identities = 276/609 (45%), Positives = 380/609 (62%), Gaps = 16/609 (2%)

Query: 108 WAKLKLAIKAIFLKQPTSCDLEKLYQAVNDLCLHKMGGNLYQRIEKECEEHISAAIRSLV 167
           W KL  AI  I LK  +S D  +LY AV +   HK+G  LY R+++  EE+++A ++S++
Sbjct: 1   WEKLLDAIDQILLKSFSSLDYMELYTAVYNYVPHKLGEKLYNRLKEYLEEYVAALLKSIL 60

Query: 168 GQSPDLVVFLSLVERCWQDLCDQMLMIRGIALYLDRTYVKQTPNVRSLWDMGLQLFRKYL 227
               +  V L    + W      M ++  I +YL+R YVK+      ++++GL ++R+ L
Sbjct: 61  ENDDE--VLLKTYYKEWNKFSTSMKILNNIFMYLNRYYVKRKNLDG-VYELGLDIWRESL 117

Query: 228 SSYSEVEHKTVTGLLRMIERERLGEAVDRTLLNHLLKMFTALG-----IYSESFEKPFLE 282
             +  ++ K +  LLR+IE+ERLGE +DR+L+ ++L MF  LG     +Y E FEKPFLE
Sbjct: 118 --FDPIKDKLIDALLRLIEKERLGEIIDRSLIKNVLDMFVELGLDKLEVYKEDFEKPFLE 175

Query: 283 CTSEFYAAEGMKYMQQSDVPDYLKHVEIRLHEEHERCLLYLDVSTRKPLIATAERQLLER 342
            TSEFY  E  K++Q++ V +Y+K VE RL EE ER  LYL  ST K LI   E+ L+E+
Sbjct: 176 ATSEFYKKESSKFLQENSVSEYMKKVEERLEEEEERVRLYLHSSTEKKLIEVCEKVLIEK 235

Query: 343 HISAILDKGFTMLMDGHRTEDLQRMYSLFSRV-NALESLRQALAMYIRRTGHGIVMD--- 398
           H+  +    F  L+D  + EDL+RMY L SRV N LE LR+    +I++ G   V D   
Sbjct: 236 HLEFLH-SEFQRLLDNEKIEDLRRMYRLLSRVPNGLEPLRKYFEKHIKKEGLAAVSDLAV 294

Query: 399 EEKDKDMVSSLLEFKASLDTIWEQSFSKNEAFCNTIKDAFEYLINLRQNRPAELIAKFLD 458
           E   KD V +LLE     D++  ++F+ +  F N +  AFE  IN   ++ AEL+AK+ D
Sbjct: 295 ETDPKDYVQTLLELHDKYDSLVNEAFNNDALFLNALDKAFEEFINSNSSKSAELLAKYCD 354

Query: 459 EKLRAGNKGTSEEELEGTLDKVLVLFRFIQGKDVFEAFYKKDLAKRLLLGKSASIDAEKS 518
             L+   KG +EEELE  LDK++VLF++I+ KDVFE FY+K LAKRLL G SAS DAEK 
Sbjct: 355 SLLKKSLKGLNEEELEEKLDKIIVLFKYIEDKDVFEKFYRKMLAKRLLNGTSASDDAEKK 414

Query: 519 MISKLKTECGSQFTNKLEGMFKDIELSKEINESFKQSSQAR-TKLPSGIEMSVHVLTTGY 577
           MI KLK ECG QFT+KLE MFKDI LSKE+N SFK   +     L  GI++SV VL+TG+
Sbjct: 415 MIEKLKQECGYQFTSKLERMFKDISLSKELNNSFKNHLENNLDLLSEGIDLSVLVLSTGF 474

Query: 578 WPTYPPMDVRLPHELNVYQDIFKEFYLSKYSGRRLMWQNSLGHCVLKAEFPKGKKELAVS 637
           WPT P     LP EL    + F+EFY  K+SGR+L W +SLG   LKAEF     EL VS
Sbjct: 475 WPTLPTEPFSLPEELEKALEKFEEFYSKKHSGRKLTWLHSLGRGELKAEFNDKTYELTVS 534

Query: 638 LFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLPKGRDVEDDD 697
            +Q  VL+LFND ++L+ +++ +ATG+ D  LRRTLQSL   KV +L K+PKG +   + 
Sbjct: 535 TYQMAVLLLFNDQEELTVEELSEATGLSDDLLRRTLQSLLKAKVLLLTKIPKGEEFSPNT 594

Query: 698 SFVFNEGFT 706
            F  N  FT
Sbjct: 595 VFSLNSDFT 603

Length = 603
>gnl|CDD|227934 COG5647, COG5647, Cullin, a subunit of E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|214545 smart00182, CULLIN, Cullin Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 739
KOG2167661 consensus Cullins [Cell cycle control, cell divisi 100.0
KOG2166725 consensus Cullins [Cell cycle control, cell divisi 100.0
COG5647773 Cullin, a subunit of E3 ubiquitin ligase [Posttran 100.0
PF00888588 Cullin: Cullin family; InterPro: IPR001373 Cullins 100.0
KOG2284728 consensus E3 ubiquitin ligase, Cullin 2 component 100.0
KOG2285777 consensus E3 ubiquitin ligase, Cullin 1 component 100.0
smart00182142 CULLIN Cullin. 100.0
KOG2165765 consensus Anaphase-promoting complex (APC), subuni 99.96
PF08539158 HbrB: HbrB-like; InterPro: IPR013745 HbrB is invol 97.76
KOG2167661 consensus Cullins [Cell cycle control, cell divisi 97.11
TIGR0161095 phage_O_Nterm phage replication protein O, N-termi 93.71
PF0933952 HTH_IclR: IclR helix-turn-helix domain; InterPro: 93.69
PF0208283 Rrf2: Transcriptional regulator; InterPro: IPR0009 92.71
PF1341248 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 92.64
PF0822057 HTH_DeoR: DeoR-like helix-turn-helix domain; Inter 92.37
PF1280262 MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP 92.19
PF1346368 HTH_27: Winged helix DNA-binding domain; PDB: 3GFL 90.21
PF1284061 HTH_20: Helix-turn-helix domain; PDB: 1ULY_A 2CWE_ 89.71
PF0104759 MarR: MarR family; InterPro: IPR000835 The MarR-ty 89.62
TIGR02337118 HpaR homoprotocatechuate degradation operon regula 89.06
smart0055068 Zalpha Z-DNA-binding domain in adenosine deaminase 87.27
PRK11512144 DNA-binding transcriptional repressor MarR; Provis 86.34
smart0034691 HTH_ICLR helix_turn_helix isocitrate lyase regulat 86.24
smart00347101 HTH_MARR helix_turn_helix multiple antibiotic resi 85.93
PF04492100 Phage_rep_O: Bacteriophage replication protein O ; 85.72
PF0102247 HTH_5: Bacterial regulatory protein, arsR family; 84.96
smart0042053 HTH_DEOR helix_turn_helix, Deoxyribose operon repr 84.27
PF0470362 FaeA: FaeA-like protein; PDB: 2JT1_A 2HTJ_A. 83.88
TIGR01889109 Staph_reg_Sar staphylococcal accessory regulator f 83.88
PRK10857164 DNA-binding transcriptional regulator IscR; Provis 81.99
PRK15090 257 DNA-binding transcriptional regulator KdgR; Provis 81.92
PRK11920153 rirA iron-responsive transcriptional regulator; Re 80.27
TIGR02010135 IscR iron-sulfur cluster assembly transcription fa 80.04
>KOG2167 consensus Cullins [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information 
Probab=100.00  E-value=2e-116  Score=947.28  Aligned_cols=589  Identities=60%  Similarity=0.946  Sum_probs=570.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhc-ccccccHHHHHHHHHHH
Q 004654          147 LYQRIEKECEEHISAAIRSLVGQSPDLVVFLSLVERCWQDLCDQMLMIRGIALYLDRTYVKQ-TPNVRSLWDMGLQLFRK  225 (739)
Q Consensus       147 LY~~L~~~i~~~l~~~~~~l~~~~~d~~~~L~~~~~~W~~~~~~~~~i~~iF~YLDR~yv~~-~~~~~sI~~lgl~lFr~  225 (739)
                      ||++|++.|++|+++.+.++...+.|.+.+|..+.++|..|+.+|.+|++||.||||+|+.+ ++.+++||+||+.+||.
T Consensus         2 ly~~l~~~~~~~~~~~~~q~~~~~~d~~~~l~k~~~~w~~~~~~~~mIRsIfl~lDrt~~~qsnp~v~siWem~l~LFR~   81 (661)
T KOG2167|consen    2 LYKQLRQICEQHIKAQIEQLRGDELDSVLFLEKIGRCWQPDPKQMIMIRSIFLHLDRTYVLQSNPYVLSIWEMGLQLFRA   81 (661)
T ss_pred             hHHHHHHHHHHHHHHHHhhCcCCcchHHHHHHHHhhHhhhhHHhhhhhhheeeecCCcccccCCCCcCCHHHhhHHHHHH
Confidence            89999999999999999888877777789999999999999999999999999999999999 78899999999999999


Q ss_pred             Hhcc--chhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHHhhhhccchhhhHHhHHHHHHHHHHHHHHHHHhcCChhh
Q 004654          226 YLSS--YSEVEHKTVTGLLRMIERERLGEAVDRTLLNHLLKMFTALGIYSESFEKPFLECTSEFYAAEGMKYMQQSDVPD  303 (739)
Q Consensus       226 ~v~~--~~~l~~~l~~~ll~lI~~eR~g~~id~~llk~ii~ml~~L~~Y~~~FE~~~L~~t~~yY~~~~~~~l~~~~~~~  303 (739)
                      +++.  .+.+..++.++++..|+++|.|+++|+.+|++++.|+.++++|.+.|+..|++.+.++|++++...+++..+++
T Consensus        82 ~f~~~~~~~vqs~~~N~ll~s~er~rsgeAvdrslLrsll~MLsd~~iY~esF~~~fls~f~~lY~aE~~d~~Qel~v~e  161 (661)
T KOG2167|consen   82 HFSQEPQPFVQSKTFNGLLKSIERERSGEAVDRSLLRSLLKMLSDLQIYKESFELTFLSLFRELYAAEGQDKRQELEVPE  161 (661)
T ss_pred             HhhccCCchhhccchHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcchhhhcccHH
Confidence            9998  67899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCChHHHHHHHHhhccc-chHHHHHH
Q 004654          304 YLKHVEIRLHEEHERCLLYLDVSTRKPLIATAERQLLERHISAILDKGFTMLMDGHRTEDLQRMYSLFSRV-NALESLRQ  382 (739)
Q Consensus       304 Yl~~v~~~l~eE~~r~~~yL~~~t~~~l~~~l~~~LI~~~~~~ll~~gl~~ll~~~~~~~L~~ly~Ll~~~-~~l~~l~~  382 (739)
                      ||++++.++.+|.+|+..|++.++.+.+..+|+++|+..|++.|+..|+..+++..++.++.+||.|++++ ++...++.
T Consensus       162 Yl~h~e~~l~~E~~~~i~~~D~st~k~l~atV~~~LL~~hL~~IL~kgl~~lvDm~q~~d~~rly~L~~r~~~g~l~l~q  241 (661)
T KOG2167|consen  162 YLEHVEGRLEEENDRVIEYFDSSTKKPLIATVERCLLSRHLDLILTKGLDSLVDMRQTSDLTRLYMLFSRVQGGQLSLLQ  241 (661)
T ss_pred             HHHhhhhcccchHHHHHHhcccccccchHHHHHHHHHHHHHHHHHhcchHHhhhhhhccchHhHHHHHHHHhcchHHHHH
Confidence            99999999999999999999998877899999999999999999999999999999999999999999999 89999999


Q ss_pred             HHHHHHHHhhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHHhhcCCCcchHHHHHHHhHH
Q 004654          383 ALAMYIRRTGHGIVMDEEKDKDMVSSLLEFKASLDTIWEQSFSKN--EAFCNTIKDAFEYLINLRQNRPAELIAKFLDEK  460 (739)
Q Consensus       383 ~~~~yI~~~g~~iv~~~~~~~~~V~~Ll~l~~~~~~ii~~~F~~~--~~f~~~l~~afe~~iN~~~~~~~e~LA~y~D~~  460 (739)
                      .|..|+++.|..++.+++.++++|+.+++|+++.|-++..||..+  ..|.+++++||+.|+|.++++|||+||+|+|.+
T Consensus       242 q~sdylk~~G~KlV~de~kDk~mVqELL~FK~k~Dii~~~sF~~~v~e~f~~~~~~afe~fink~~~rpAelIak~~dt~  321 (661)
T KOG2167|consen  242 QWSDYLKKPGFKLVIDEEKDKDMVQELLDFKKKVDIIVDESFLKYVAEKFLNSMSKAFETFINKRRNRPAELIAKYVDTK  321 (661)
T ss_pred             HHHHHHhcccceeccCchhhHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999988  999999999999999999999999999999999


Q ss_pred             HhcCCCCCChHHHHhhhccceeeeeeccChHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHhCCchhHhHHHHHH
Q 004654          461 LRAGNKGTSEEELEGTLDKVLVLFRFIQGKDVFEAFYKKDLAKRLLLGKSASIDAEKSMISKLKTECGSQFTNKLEGMFK  540 (739)
Q Consensus       461 lr~~~k~~s~~e~e~~l~~i~~lf~~l~~KD~Fe~~Y~k~LakRLL~~~s~s~d~E~~~i~~Lk~~cG~~~t~kle~M~~  540 (739)
                      |+.|+|+.++++++..++.++.|||||.+||+||+||++.||+|||.++|+|.|+|+.|+.+||.+||..||+|||+||+
T Consensus       322 Lr~gnk~~~d~~l~~~~d~i~~lfr~i~gkdvfeA~ykkdLakrLLl~kSAsvdae~~ml~~lk~ecgs~ft~kLegMfk  401 (661)
T KOG2167|consen  322 LRAGNKETSDEELEFVLDKILVLFRFIHGKDVFEAFYKKDLAKRLLLGKSASVDAEKSMLSKLKLECGSAFTYKLEGMFK  401 (661)
T ss_pred             HHhccccccchhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhccchhhcchhHHHHHhhhhcchHHHHHHHHhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhccCCCCCcceEEEEeecCCCCCCCCCCCcCChHHHHHHHHHHHHHhccCCCceEEeecCCce
Q 004654          541 DIELSKEINESFKQSSQARTKLPSGIEMSVHVLTTGYWPTYPPMDVRLPHELNVYQDIFKEFYLSKYSGRRLMWQNSLGH  620 (739)
Q Consensus       541 Di~~S~~l~~~f~~~~~~~~~~~~~~~~~v~VLt~~~WP~~~~~~~~lP~~l~~~~~~F~~fY~~k~~~RkL~W~~~lg~  620 (739)
                      ||+.|++++..|+++...++..+.++ +.|.|||.|+||+|++.++.||++|..+++.|..||..+|+||+|+|+++||+
T Consensus       402 dme~sk~i~~~f~~~~~~~~~~~~~l-~~v~vlt~~yWpty~~~ev~Lp~em~~~~e~F~~fyl~k~sgrklqW~~~lg~  480 (661)
T KOG2167|consen  402 DMELSKEINRAFKQSKGANNRLEGNL-LTVNVLTMGYWPTYPPMEVLLPKEMRDCQEIFKKFYLGKHSGRKLQWQDSLGH  480 (661)
T ss_pred             hHHHHHHHHHHHHHHHHhhccCcCCc-eEEEeecccccCCCCchhccCCHHHHHHHHHHHHhccccccCcceeeecCCcc
Confidence            99999999999999855434555556 99999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEecCceEEEEEcHHHHHHHHHhcCCCCCCHHHHHHHhCCCHHHHHHHhhhhhcCCcceeeeCCCCCCCCCCCeEE
Q 004654          621 CVLKAEFPKGKKELAVSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLPKGRDVEDDDSFV  700 (739)
Q Consensus       621 ~~l~~~f~~~~~~l~vs~~Qa~ILllFN~~~~ls~~eI~~~t~i~~~~l~~~L~sL~~~k~~iL~k~p~~~~v~~~d~f~  700 (739)
                      |+|++.|+.|++||.||+||++|||+||+.+.+|++||.+.|+|.+.+|+|+|+||+||+.|+|.+.|+|+++.+||.|.
T Consensus       481 ~v~ka~f~~gkkel~~slfq~~vll~fn~~~~~s~~ei~~~t~i~d~el~rtlqsl~cgr~rvl~~~pkg~~~~~~~~f~  560 (661)
T KOG2167|consen  481 CVLKAEFKEGKKELQVSLFQTLVLLMFNEGEGLSYEEIKESTGIEDIELRRTLQSLACGRARVLQKVPKGKEVEDGDKFI  560 (661)
T ss_pred             hhhhhhccCCchHHHHHHHHHhHhhccCCCCcccHHHHHHhccccHHHHHHHHHHHhcccceeeeeCCCCCCCCCCCEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCCCceeEEecccccchhccc------------cccccceEEee
Q 004654          701 FNEGFTAPLYRIKVWASVMQQYCDT------------LSTLDCLICHL  736 (739)
Q Consensus       701 ~N~~F~~~~~rIki~~i~~k~~~e~------------~~~~d~~~~~~  736 (739)
                      ||.+|++|.+|||||+||+||+.|.            -++|||||||+
T Consensus       561 ~n~~f~~kl~rikinqi~~ke~~ee~~~~~e~v~~drqy~idaaivri  608 (661)
T KOG2167|consen  561 VNDKFTHKLYRIKINQIQMKETVEENKSTTERVFQDRQYQIDAAIVRI  608 (661)
T ss_pred             echhhcchhheehHhhhhHHHHHHhhhhhHHHHHhhhhHHHHHHHHHH
Confidence            9999999999999999999998654            46779999985

>KOG2166 consensus Cullins [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG5647 Cullin, a subunit of E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF00888 Cullin: Cullin family; InterPro: IPR001373 Cullins are a family of hydrophobic proteins that act as scaffolds for ubiquitin ligases (E3) Back     alignment and domain information
>KOG2284 consensus E3 ubiquitin ligase, Cullin 2 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2285 consensus E3 ubiquitin ligase, Cullin 1 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>smart00182 CULLIN Cullin Back     alignment and domain information
>KOG2165 consensus Anaphase-promoting complex (APC), subunit 2 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF08539 HbrB: HbrB-like; InterPro: IPR013745 HbrB is involved in hyphal growth and polarity [] Back     alignment and domain information
>KOG2167 consensus Cullins [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>TIGR01610 phage_O_Nterm phage replication protein O, N-terminal domain Back     alignment and domain information
>PF09339 HTH_IclR: IclR helix-turn-helix domain; InterPro: IPR005471 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities Back     alignment and domain information
>PF02082 Rrf2: Transcriptional regulator; InterPro: IPR000944 The following uncharacterised bacterial proteins have been shown to be evolutionary related, Desulfovibrio vulgaris protein Rrf2; Escherichia coli hypothetical proteins yfhP and yjeB; Bacillus subtilis hypothetical proteins yhdE, yrzC and ywgB; Mycobacterium tuberculosis hypothetical protein Rv1287; and Synechocystis sp Back     alignment and domain information
>PF13412 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 1I1G_B 2IA0_B 3I4P_A 2GQQ_A 2L4A_A 2CFX_B 2DBB_B 2EFO_A 2EFQ_A 2PN6_A Back     alignment and domain information
>PF08220 HTH_DeoR: DeoR-like helix-turn-helix domain; InterPro: IPR001034 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism Back     alignment and domain information
>PF12802 MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP4_B 3KP2_A 3KP5_A 3KP3_B 3KP7_A 3NQO_B 3K0L_B Back     alignment and domain information
>PF13463 HTH_27: Winged helix DNA-binding domain; PDB: 3GFL_A 2YR2_B 3GFM_A 3GFJ_A 3GF2_A 3GEZ_A 2GXG_A 3GFI_A 2EB7_A Back     alignment and domain information
>PF12840 HTH_20: Helix-turn-helix domain; PDB: 1ULY_A 2CWE_A 1Y0U_B 2QUF_B 2QLZ_C 2OQG_B 2ZKZ_C 3PQK_A 3PQJ_D 3F6O_B Back     alignment and domain information
>PF01047 MarR: MarR family; InterPro: IPR000835 The MarR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 135 amino acids present in transcription regulators of the MarR/SlyA family, involved in the development of antibiotic resistance Back     alignment and domain information
>TIGR02337 HpaR homoprotocatechuate degradation operon regulator, HpaR Back     alignment and domain information
>smart00550 Zalpha Z-DNA-binding domain in adenosine deaminases Back     alignment and domain information
>PRK11512 DNA-binding transcriptional repressor MarR; Provisional Back     alignment and domain information
>smart00346 HTH_ICLR helix_turn_helix isocitrate lyase regulation Back     alignment and domain information
>smart00347 HTH_MARR helix_turn_helix multiple antibiotic resistance protein Back     alignment and domain information
>PF04492 Phage_rep_O: Bacteriophage replication protein O ; InterPro: IPR006497 This entry is represented by the N-terminal domain of Bacteriophage lambda, GpO Back     alignment and domain information
>PF01022 HTH_5: Bacterial regulatory protein, arsR family; InterPro: IPR001845 Bacterial transcription regulatory proteins that bind DNA via a helix-turn-helix (HTH) motif can be grouped into families on the basis of sequence similarities Back     alignment and domain information
>smart00420 HTH_DEOR helix_turn_helix, Deoxyribose operon repressor Back     alignment and domain information
>PF04703 FaeA: FaeA-like protein; PDB: 2JT1_A 2HTJ_A Back     alignment and domain information
>TIGR01889 Staph_reg_Sar staphylococcal accessory regulator family Back     alignment and domain information
>PRK10857 DNA-binding transcriptional regulator IscR; Provisional Back     alignment and domain information
>PRK15090 DNA-binding transcriptional regulator KdgR; Provisional Back     alignment and domain information
>PRK11920 rirA iron-responsive transcriptional regulator; Reviewed Back     alignment and domain information
>TIGR02010 IscR iron-sulfur cluster assembly transcription factor IscR Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query739
2hye_C759 Crystal Structure Of The Ddb1-cul4a-rbx1-sv5v Compl 0.0
4a0k_A742 Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp 0.0
4a0c_C741 Structure Of The Cand1-Cul4b-Rbx1 Complex Length = 0.0
4a0l_E726 Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp 0.0
4a64_A354 Crystal Structure Of The N-Terminal Domain Of Human 3e-84
1ldj_A760 Structure Of The Cul1-rbx1-skp1-f Boxskp2 Scf Ubiqu 2e-72
1u6g_A776 Crystal Structure Of The Cand1-Cul1-Roc1 Complex Le 2e-72
4ap2_B410 Crystal Structure Of The Human Klhl11-cul3 Complex 5e-51
4apf_B388 Crystal Structure Of The Human Klhl11-cul3 Complex 8e-51
4eoz_B364 Crystal Structure Of The Spop Btb Domain Complexed 1e-43
1ldk_B366 Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiqu 7e-42
4f52_A282 Structure Of A Glomulin-Rbx1-Cul1 Complex Length = 7e-39
3rtr_A368 A Ring E3-Substrate Complex Poised For Ubiquitin-Li 8e-39
3dpl_C382 Structural Insights Into Nedd8 Activation Of Cullin 5e-26
1ldk_A396 Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiqu 1e-25
3dqv_C382 Structural Insights Into Nedd8 Activation Of Cullin 2e-24
2wzk_A391 Structure Of The Cul5 N-Terminal Domain At 2.05a Re 9e-15
>pdb|2HYE|C Chain C, Crystal Structure Of The Ddb1-cul4a-rbx1-sv5v Complex Length = 759 Back     alignment and structure 
Iteration: 1

 Score =  695 bits (1793), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/620 (56%), Positives = 445/620 (71%), Gaps = 4/620 (0%)
Query: 97  PTLPTNFEEDTWXXXXXXXXXXXXXQPTSCDLEKLYQAVNDLCLHKMGGNLYQRIEKECE 156
           P LP N+ +DTW                  +LE+LYQAV +LC HK+   LY+++ + CE
Sbjct: 52  PRLPDNYTQDTWRKLHEAVRAVQSSTSIRYNLEELYQAVENLCSHKVSPMLYKQLRQACE 111
Query: 157 EHISAAIRSLVGQSPDLVVFLSLVERCWQDLCDQMLMIRGIALYLDRTYVKQTPNVRSLW 216
           +H+ A I      S D V+FL  +  CWQD C QM+MIR I L+LDRTYV Q   + S+W
Sbjct: 112 DHVQAQILPFREDSLDSVLFLKKINTCWQDHCRQMIMIRSIFLFLDRTYVLQNSTLPSIW 171
Query: 217 DMGLQLFRKYLSSYSEVEHKTVTGLLRMIERERLGEAVDRTLLNHLLKMFTALGIYSESF 276
           DMGL+LFR ++ S   V+ KT+ G+L +IERER GEAVDR+LL  LL M + L +Y +SF
Sbjct: 172 DMGLELFRTHIISDKMVQSKTIDGILLLIERERSGEAVDRSLLRSLLGMLSDLQVYKDSF 231
Query: 277 EKPFLECTSEFYAAEGMKYMQQSDVPDYLKHVEIRLHEEHERCLLYLDVSTRKPLIATAE 336
           E  FLE T+  YAAEG + MQ+ +VP+YL HV  RL EE +R + YLD ST+KPLIA  E
Sbjct: 232 ELKFLEETNCLYAAEGQRLMQEREVPEYLNHVSKRLEEEGDRVITYLDHSTQKPLIACVE 291
Query: 337 RQLLERHISAILDKGFTMLMDGHRTEDLQRMYSLFSRV-NALESLRQALAMYIRRTGHGI 395
           +QLL  H++AIL KG   L+D +R  DL +MY LFSRV    ++L Q  + YI+  G  I
Sbjct: 292 KQLLGEHLTAILQKGLDHLLDENRVPDLAQMYQLFSRVRGGQQALLQHWSEYIKTFGTAI 351
Query: 396 VMDEEKDKDMVSSLLEFKASLDTIWEQSFSKNEAFCNTIKDAFEYLINLRQNRPAELIAK 455
           V++ EKDKDMV  LL+FK  +D + E  F KNE F N +K++FE  IN R N+PAELIAK
Sbjct: 352 VINPEKDKDMVQDLLDFKDKVDHVIEVCFQKNERFVNLMKESFETFINKRPNKPAELIAK 411
Query: 456 FLDEKLRAGNKGTSEEELEGTLDKVLVLFRFIQGKDVFEAFYKKDLAKRLLLGKSASIDA 515
            +D KLRAGNK  ++EELE TLDK+++LFRFI GKDVFEAFYKKDLAKRLL+GKSAS+DA
Sbjct: 412 HVDSKLRAGNKEATDEELERTLDKIMILFRFIHGKDVFEAFYKKDLAKRLLVGKSASVDA 471
Query: 516 EKSMISKLKTECGSQFTNKLEGMFKDIELSKEINESFKQSSQARTKLPSG-IEMSVHVLT 574
           EKSM+SKLK ECG+ FT+KLEGMFKD+ELSK+I   FKQ  Q ++   SG I+++V++LT
Sbjct: 472 EKSMLSKLKHECGAAFTSKLEGMFKDMELSKDIMVHFKQHMQNQS--DSGPIDLTVNILT 529
Query: 575 TGYWPTYPPMDVRLPHELNVYQDIFKEFYLSKYSGRRLMWQNSLGHCVLKAEFPKGKKEL 634
            GYWPTY PM+V L  E+   Q++FK FYL K+SGR+L WQ +LGH VLKAEF +GKKE 
Sbjct: 530 MGYWPTYTPMEVHLTPEMIKLQEVFKAFYLGKHSGRKLQWQTTLGHAVLKAEFKEGKKEF 589
Query: 635 AVSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLPKGRDVE 694
            VSLFQT+VL++FN+    SF++IK ATGIED ELRRTLQSLACGK RVL K PKG++VE
Sbjct: 590 QVSLFQTLVLLMFNEGDGFSFEEIKMATGIEDSELRRTLQSLACGKARVLIKSPKGKEVE 649
Query: 695 DDDSFVFNEGFTAPLYRIKV 714
           D D F+FN  F   L+RIK+
Sbjct: 650 DGDKFIFNGEFKHKLFRIKI 669
>pdb|4A0K|A Chain A, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic Site Containing Dna-Duplex Length = 742 Back     alignment and structure
>pdb|4A0C|C Chain C, Structure Of The Cand1-Cul4b-Rbx1 Complex Length = 741 Back     alignment and structure
>pdb|4A0L|E Chain E, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic Site Containing Dna-Duplex Length = 726 Back     alignment and structure
>pdb|4A64|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Cul4b At 2.57a Resolution Length = 354 Back     alignment and structure
>pdb|1LDJ|A Chain A, Structure Of The Cul1-rbx1-skp1-f Boxskp2 Scf Ubiquitin Ligase Complex Length = 760 Back     alignment and structure
>pdb|1U6G|A Chain A, Crystal Structure Of The Cand1-Cul1-Roc1 Complex Length = 776 Back     alignment and structure
>pdb|4AP2|B Chain B, Crystal Structure Of The Human Klhl11-cul3 Complex At 2.8a Resolution Length = 410 Back     alignment and structure
>pdb|4APF|B Chain B, Crystal Structure Of The Human Klhl11-cul3 Complex At 3.1a Resolution Length = 388 Back     alignment and structure
>pdb|4EOZ|B Chain B, Crystal Structure Of The Spop Btb Domain Complexed With The Cul3 N- Terminal Domain Length = 364 Back     alignment and structure
>pdb|1LDK|B Chain B, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin Ligase Complex Length = 366 Back     alignment and structure
>pdb|4F52|A Chain A, Structure Of A Glomulin-Rbx1-Cul1 Complex Length = 282 Back     alignment and structure
>pdb|3RTR|A Chain A, A Ring E3-Substrate Complex Poised For Ubiquitin-Like Protein Transfer: Structural Insights Into Cullin-Ring Ligases Length = 368 Back     alignment and structure
>pdb|3DPL|C Chain C, Structural Insights Into Nedd8 Activation Of Cullin-Ring Ligases: Conformational Control Of Conjugation Length = 382 Back     alignment and structure
>pdb|1LDK|A Chain A, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin Ligase Complex Length = 396 Back     alignment and structure
>pdb|3DQV|C Chain C, Structural Insights Into Nedd8 Activation Of Cullin-Ring Ligases: Conformational Control Of Conjugation Length = 382 Back     alignment and structure
>pdb|2WZK|A Chain A, Structure Of The Cul5 N-Terminal Domain At 2.05a Resolution Length = 391 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query739
2hye_C759 Cullin-4A, CUL-4A; beta propeller, ring finger, zi 0.0
1ldj_A760 Cullin homolog 1, CUL-1; cullin, ROC1, HRT1, zinc 0.0
4a64_A354 Cullin-4B, CUL4B, CUL-4B; cell cycle; 2.57A {Homo 1e-103
4ap2_B410 Cullin-3, CUL-3; ubiquitination, E3 ligase, cell c 4e-99
4eoz_B364 Cullin-3, CUL-3; E3 ubiquitin ligase, nucleus, pro 1e-87
3dpl_C382 Cullin-5; ubiquitin, NEDD8, cullin, HOST-virus int 6e-87
2wzk_A391 Cullin-5, CUL-5; UBL conjugation pathway, HIV, pho 1e-77
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-15
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-11
>2hye_C Cullin-4A, CUL-4A; beta propeller, ring finger, zinc finger, propeller cluster, helical repeats, cullin repeats, protein binding; HET: DNA; 3.10A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 4a0k_A* 4a0c_C 4a0l_E* Length = 759 Back     alignment and structure
 Score =  646 bits (1667), Expect = 0.0
 Identities = 362/659 (54%), Positives = 468/659 (71%), Gaps = 2/659 (0%)

Query: 67  RQQAAANLSRKKAQPPQPAKKLVIKLLKAKPTLPTNFEEDTWAKLKLAIKAIFLKQPTSC 126
            + AA   +  K      +KKLVIK  + +P LP N+ +DTW KL  A++A+        
Sbjct: 22  TKPAALAAAPAKPGGAGGSKKLVIKNFRDRPRLPDNYTQDTWRKLHEAVRAVQSSTSIRY 81

Query: 127 DLEKLYQAVNDLCLHKMGGNLYQRIEKECEEHISAAIRSLVGQSPDLVVFLSLVERCWQD 186
           +LE+LYQAV +LC HK+   LY+++ + CE+H+ A I      S D V+FL  +  CWQD
Sbjct: 82  NLEELYQAVENLCSHKVSPMLYKQLRQACEDHVQAQILPFREDSLDSVLFLKKINTCWQD 141

Query: 187 LCDQMLMIRGIALYLDRTYVKQTPNVRSLWDMGLQLFRKYLSSYSEVEHKTVTGLLRMIE 246
            C QM+MIR I L+LDRTYV Q   + S+WDMGL+LFR ++ S   V+ KT+ G+L +IE
Sbjct: 142 HCRQMIMIRSIFLFLDRTYVLQNSTLPSIWDMGLELFRTHIISDKMVQSKTIDGILLLIE 201

Query: 247 RERLGEAVDRTLLNHLLKMFTALGIYSESFEKPFLECTSEFYAAEGMKYMQQSDVPDYLK 306
           RER GEAVDR+LL  LL M + L +Y +SFE  FLE T+  YAAEG + MQ+ +VP+YL 
Sbjct: 202 RERSGEAVDRSLLRSLLGMLSDLQVYKDSFELKFLEETNCLYAAEGQRLMQEREVPEYLN 261

Query: 307 HVEIRLHEEHERCLLYLDVSTRKPLIATAERQLLERHISAILDKGFTMLMDGHRTEDLQR 366
           HV  RL EE +R + YLD ST+KPLIA  E+QLL  H++AIL KG   L+D +R  DL +
Sbjct: 262 HVSKRLEEEGDRVITYLDHSTQKPLIACVEKQLLGEHLTAILQKGLDHLLDENRVPDLAQ 321

Query: 367 MYSLFSRV-NALESLRQALAMYIRRTGHGIVMDEEKDKDMVSSLLEFKASLDTIWEQSFS 425
           MY LFSRV    ++L Q  + YI+  G  IV++ EKDKDMV  LL+FK  +D + E  F 
Sbjct: 322 MYQLFSRVRGGQQALLQHWSEYIKTFGTAIVINPEKDKDMVQDLLDFKDKVDHVIEVCFQ 381

Query: 426 KNEAFCNTIKDAFEYLINLRQNRPAELIAKFLDEKLRAGNKGTSEEELEGTLDKVLVLFR 485
           KNE F N +K++FE  IN R N+PAELIAK +D KLRAGNK  ++EELE TLDK+++LFR
Sbjct: 382 KNERFVNLMKESFETFINKRPNKPAELIAKHVDSKLRAGNKEATDEELERTLDKIMILFR 441

Query: 486 FIQGKDVFEAFYKKDLAKRLLLGKSASIDAEKSMISKLKTECGSQFTNKLEGMFKDIELS 545
           FI GKDVFEAFYKKDLAKRLL+GKSAS+DAEKSM+SKLK ECG+ FT+KLEGMFKD+ELS
Sbjct: 442 FIHGKDVFEAFYKKDLAKRLLVGKSASVDAEKSMLSKLKHECGAAFTSKLEGMFKDMELS 501

Query: 546 KEINESFKQSSQARTKLPSGIEMSVHVLTTGYWPTYPPMDVRLPHELNVYQDIFKEFYLS 605
           K+I   FKQ  Q ++     I+++V++LT GYWPTY PM+V L  E+   Q++FK FYL 
Sbjct: 502 KDIMVHFKQHMQNQSD-SGPIDLTVNILTMGYWPTYTPMEVHLTPEMIKLQEVFKAFYLG 560

Query: 606 KYSGRRLMWQNSLGHCVLKAEFPKGKKELAVSLFQTVVLMLFNDAQKLSFQDIKDATGIE 665
           K+SGR+L WQ +LGH VLKAEF +GKKE  VSLFQT+VL++FN+    SF++IK ATGIE
Sbjct: 561 KHSGRKLQWQTTLGHAVLKAEFKEGKKEFQVSLFQTLVLLMFNEGDGFSFEEIKMATGIE 620

Query: 666 DKELRRTLQSLACGKVRVLQKLPKGRDVEDDDSFVFNEGFTAPLYRIKVWASVMQQYCD 724
           D ELRRTLQSLACGK RVL K PKG++VED D F+FN  F   L+RIK+    M++  +
Sbjct: 621 DSELRRTLQSLACGKARVLIKSPKGKEVEDGDKFIFNGEFKHKLFRIKINQIQMKETVE 679
>1ldj_A Cullin homolog 1, CUL-1; cullin, ROC1, HRT1, zinc ring finger, ligase, ubiquitin, ubiquitination, SCF; 3.00A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 1u6g_A 1ldk_A 1ldk_B 3rtr_A Length = 760 Back     alignment and structure
>4a64_A Cullin-4B, CUL4B, CUL-4B; cell cycle; 2.57A {Homo sapiens} Length = 354 Back     alignment and structure
>4ap2_B Cullin-3, CUL-3; ubiquitination, E3 ligase, cell cycle; HET: EDO; 2.80A {Homo sapiens} PDB: 4apf_B Length = 410 Back     alignment and structure
>4eoz_B Cullin-3, CUL-3; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} PDB: 4apf_B Length = 364 Back     alignment and structure
>3dpl_C Cullin-5; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} PDB: 3dqv_C Length = 382 Back     alignment and structure
>2wzk_A Cullin-5, CUL-5; UBL conjugation pathway, HIV, phosphoprotein, isopeptide bond, protein binding; 2.05A {Mus musculus} Length = 391 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 739
d2hyec2347 a.118.17.1 (C:55-401) Cullin-4A {Human (Homo sapie 1e-113
d2hyec3273 e.40.1.1 (C:403-675) Cullin-4A {Human (Homo sapien 1e-105
d1ldja3276 e.40.1.1 (A:411-686) Cullin homolog 1, cul-1 {Huma 7e-99
d1ldja2394 a.118.17.1 (A:17-410) Cullin homolog 1, Cul-1 {Hum 1e-84
>d2hyec2 a.118.17.1 (C:55-401) Cullin-4A {Human (Homo sapiens) [TaxId: 9606]} Length = 347 Back     information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cullin repeat-like
family: Cullin repeat
domain: Cullin-4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  344 bits (884), Expect = e-113
 Identities = 173/347 (49%), Positives = 231/347 (66%), Gaps = 1/347 (0%)

Query: 100 PTNFEEDTWAKLKLAIKAIFLKQPTSCDLEKLYQAVNDLCLHKMGGNLYQRIEKECEEHI 159
           P N+ +DTW KL  A++A+        +LE+LYQAV +LC HK+   LY+++ + CE+H+
Sbjct: 1   PDNYTQDTWRKLHEAVRAVQSSTSIRYNLEELYQAVENLCSHKVSPMLYKQLRQACEDHV 60

Query: 160 SAAIRSLVGQSPDLVVFLSLVERCWQDLCDQMLMIRGIALYLDRTYVKQTPNVRSLWDMG 219
            A I      S D V+FL  +  CWQD C QM+MIR I L+LDRTYV Q   + S+WDMG
Sbjct: 61  QAQILPFREDSLDSVLFLKKINTCWQDHCRQMIMIRSIFLFLDRTYVLQNSTLPSIWDMG 120

Query: 220 LQLFRKYLSSYSEVEHKTVTGLLRMIERERLGEAVDRTLLNHLLKMFTALGIYSESFEKP 279
           L+LFR ++ S   V+ KT+ G+L +IERER GEAVDR+LL  LL M + L +Y +SFE  
Sbjct: 121 LELFRTHIISDKMVQSKTIDGILLLIERERSGEAVDRSLLRSLLGMLSDLQVYKDSFELK 180

Query: 280 FLECTSEFYAAEGMKYMQQSDVPDYLKHVEIRLHEEHERCLLYLDVSTRKPLIATAERQL 339
           FLE T+  YAAEG + MQ+ +VP+YL HV  RL EE +R + YLD ST+KPLIA  E+QL
Sbjct: 181 FLEETNCLYAAEGQRLMQEREVPEYLNHVSKRLEEEGDRVITYLDHSTQKPLIACVEKQL 240

Query: 340 LERHISAILDKGFTMLMDGHRTEDLQRMYSLFSRV-NALESLRQALAMYIRRTGHGIVMD 398
           L  H++AIL KG   L+D +R  DL +MY LFSRV    ++L Q  + YI+  G  IV++
Sbjct: 241 LGEHLTAILQKGLDHLLDENRVPDLAQMYQLFSRVRGGQQALLQHWSEYIKTFGTAIVIN 300

Query: 399 EEKDKDMVSSLLEFKASLDTIWEQSFSKNEAFCNTIKDAFEYLINLR 445
            EKDKDMV  LL+FK  +D + E  F KNE F N +K++FE  IN R
Sbjct: 301 PEKDKDMVQDLLDFKDKVDHVIEVCFQKNERFVNLMKESFETFINKR 347
>d2hyec3 e.40.1.1 (C:403-675) Cullin-4A {Human (Homo sapiens) [TaxId: 9606]} Length = 273 Back     information, alignment and structure
>d1ldja3 e.40.1.1 (A:411-686) Cullin homolog 1, cul-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 276 Back     information, alignment and structure
>d1ldja2 a.118.17.1 (A:17-410) Cullin homolog 1, Cul-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 394 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query739
d2hyec2347 Cullin-4A {Human (Homo sapiens) [TaxId: 9606]} 100.0
d1ldja2394 Cullin homolog 1, Cul-1 {Human (Homo sapiens) [Tax 100.0
d2hyec3273 Cullin-4A {Human (Homo sapiens) [TaxId: 9606]} 100.0
d1ldja3276 Cullin homolog 1, cul-1 {Human (Homo sapiens) [Tax 100.0
d1lnwa_141 MexR repressor {Pseudomonas aeruginosa [TaxId: 287 84.6
d1ylfa1138 Hypothetical protein BC1842 {Bacillus cereus [TaxI 83.66
d1lj9a_144 Transcriptional regulator SlyA {Enterococcus faeca 82.57
d2a61a1139 Transcriptional regulator TM0710 {Thermotoga marit 82.06
d1mkma175 Transcriptional regulator IclR, N-terminal domain 80.61
>d2hyec2 a.118.17.1 (C:55-401) Cullin-4A {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cullin repeat-like
family: Cullin repeat
domain: Cullin-4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=0  Score=502.59  Aligned_cols=346  Identities=50%  Similarity=0.836  Sum_probs=333.8

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf             98318988999999999998229997748999999985342693369999999999999999997553189958999999
Q 004654          100 PTNFEEDTWAKLKLAIKAIFLKQPTSCDLEKLYQAVNDLCLHKMGGNLYQRIEKECEEHISAAIRSLVGQSPDLVVFLSL  179 (739)
Q Consensus       100 ~~~~~e~~W~~L~~aI~~I~~~~~~~~s~e~LY~~Vy~lC~~k~ge~LY~~L~~~i~~~l~~~~~~l~~~~~~~~~~L~~  179 (739)
                      |++|+|++|..|++||++|+.+++++.|||+||+.||++|++++|++||+++++.|++|+...+.++.....++..+|+.
T Consensus         1 p~~~~e~~W~~L~~ai~~I~~~~~~~~s~e~lY~~vy~lc~~~~~~~LY~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~   80 (347)
T d2hyec2           1 PDNYTQDTWRKLHEAVRAVQSSTSIRYNLEELYQAVENLCSHKVSPMLYKQLRQACEDHVQAQILPFREDSLDSVLFLKK   80 (347)
T ss_dssp             SCCTTTTHHHHHHHHHHTTSTTCCCSSCHHHHHHHHHHHCCTTTHHHHHHHHHHHHHHHHHHHHHHHTSCCCCTTHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf             97268879999999999998289999889999999999992686999999999999999999999998625768999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf             99999999999999999999831434402566454889999999998424611489999999999998715995796989
Q 004654          180 VERCWQDLCDQMLMIRGIALYLDRTYVKQTPNVRSLWDMGLQLFRKYLSSYSEVEHKTVTGLLRMIERERLGEAVDRTLL  259 (739)
Q Consensus       180 ~~~~W~~~~~~~~~l~~iF~YLDR~yv~~~~~~~~I~~l~l~lFr~~v~~~~~i~~~l~~~il~lI~~~R~g~~id~~~l  259 (739)
                      +.+.|.+|+.++.+|+++|+||||+|+.+++..++|+++|+.+|+++|+.++.+.++++++++++|.++|.|+.+|+.++
T Consensus        81 ~~~~W~~~~~~~~~l~~if~YLdr~yv~~~~~~~~i~~~~l~lf~~~v~~~~~~~~~l~~~ll~~I~~~R~g~~i~~~ll  160 (347)
T d2hyec2          81 INTCWQDHCRQMIMIRSIFLFLDRTYVLQNSTLPSIWDMGLELFRTHIISDKMVQSKTIDGILLLIERERSGEAVDRSLL  160 (347)
T ss_dssp             HHHHHHHHHHHHHHHHHHTHHHHTTTTTSCSSSCCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHTTTTTCCCCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
T ss_conf             99999999999999999997703156404899995999999998899823077779999999999999875897759999


Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf             99999952101545640786999989999999999986099134899999999999999732059575799999999998
Q 004654          260 NHLLKMFTALGIYSESFEKPFLECTSEFYAAEGMKYMQQSDVPDYLKHVEIRLHEEHERCLLYLDVSTRKPLIATAERQL  339 (739)
Q Consensus       260 ~~~i~ml~~L~~Y~~~FE~~~L~~t~~yY~~~~~~~~~~~~~~~Yl~~v~~~l~eE~~r~~~yL~~~t~~~l~~~~~~~L  339 (739)
                      ++++.|+..+++|.+.||++|+++|.+||+.++.+|++++++++|+.+|+.++.+|.+||..|++++|.+++.++++++|
T Consensus       161 ~~~~~~~~~l~~Y~~~fE~~~l~~t~~yY~~~~~~~l~~~~~~~Yl~~v~~~l~eE~~r~~~~l~~~t~~~l~~~l~~~L  240 (347)
T d2hyec2         161 RSLLGMLSDLQVYKDSFELKFLEETNCLYAAEGQRLMQEREVPEYLNHVSKRLEEEGDRVITYLDHSTQKPLIACVEKQL  240 (347)
T ss_dssp             HHHHHHHHHTTCHHHHTHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTHHHHTTTSCTTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_conf             99998861555767887999999999999999999988598899999999999999999997546767999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             99989999998898611259967799999863113-30799999999999986323102830006899999999997989
Q 004654          340 LERHISAILDKGFTMLMDGHRTEDLQRMYSLFSRV-NALESLRQALAMYIRRTGHGIVMDEEKDKDMVSSLLEFKASLDT  418 (739)
Q Consensus       340 I~~~~~~ll~~gl~~ll~~~~~~~L~~ly~Ll~~~-~~l~~l~~~~~~~I~~~g~~iv~~~~~~~~~V~~Ll~l~~~~~~  418 (739)
                      |.+|.+.|+++|+..||++++.++|++||+|++|+ ++++.|+..|++||++.|.+++.+.++++++|+.|++++++++.
T Consensus       241 i~~~~~~il~~~~~~ll~~~~~~~L~~ly~L~~r~~~~~~~l~~~f~~~i~~~G~~~v~~~~~~~~~V~~ll~l~~k~~~  320 (347)
T d2hyec2         241 LGEHLTAILQKGLDHLLDENRVPDLAQMYQLFSRVRGGQQALLQHWSEYIKTFGTAIVINPEKDKDMVQDLLDFKDKVDH  320 (347)
T ss_dssp             TTTCSHHHHHTTHHHHHTTTCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHSCGGGTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
T ss_conf             99999999999899998566389999998876205674799999999999999999881930234899999999999999


Q ss_pred             HHHHHCCCCHHHHHHHHHHHHHHHHCC
Q ss_conf             999841799887999997999985148
Q 004654          419 IWEQSFSKNEAFCNTIKDAFEYLINLR  445 (739)
Q Consensus       419 ii~~~F~~~~~f~~~l~~afe~~iN~~  445 (739)
                      ++..||++|+.|.+++++||+.|+|.+
T Consensus       321 li~~~F~~d~~f~~~l~~af~~~iNkr  347 (347)
T d2hyec2         321 VIEVCFQKNERFVNLMKESFETFINKR  347 (347)
T ss_dssp             HHHTTTTTCHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHCCCCHHHHHHHHHHHHHHCCCC
T ss_conf             999981998899999999999970698
>d1ldja2 a.118.17.1 (A:17-410) Cullin homolog 1, Cul-1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2hyec3 e.40.1.1 (C:403-675) Cullin-4A {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ldja3 e.40.1.1 (A:411-686) Cullin homolog 1, cul-1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1lnwa_ a.4.5.28 (A:) MexR repressor {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1ylfa1 a.4.5.55 (A:5-142) Hypothetical protein BC1842 {Bacillus cereus [TaxId: 1396]} Back     information, alignment and structure
>d1lj9a_ a.4.5.28 (A:) Transcriptional regulator SlyA {Enterococcus faecalis [TaxId: 1351]} Back     information, alignment and structure
>d2a61a1 a.4.5.28 (A:5-143) Transcriptional regulator TM0710 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1mkma1 a.4.5.33 (A:1-75) Transcriptional regulator IclR, N-terminal domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure