Citrus Sinensis ID: 004667

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------74

MEEDLLVSGEASGNNRNNDNNRRRRGPTALFRRRTDAITRGSPYQKAAALVDLAEDGIGLPEEILDRSSFESSAKFYFIFIKFDYIWSLNYFALIVLNFLETGVGTYSCYDREYYYLGQLPYLTGWESLVYEGITLVILIIHTFFPITYEGSPIFWKSTYTRLKVLCLLILVADFLVYGLYLSPIAFNFLPLRIAPYIRVVFFILNIRQLRDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAYVIFEDTVQGNMVFTSFGTTLYQMFVLFTTSNNPDVWIPAYKASRWYCLFFVLYVLIGVYFVTNLILAVVYDSFKSQLAKQVSEMDRMRRRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAIALRFQKEDVPSCFENLPSIYHSPFSEKLKAFIRSTKFGYMISIILIVNLVAVIVETTLDIQESSLQSVWQEVEFVFGWIYVLEMALKIYSYGFENYWRDGQNRFDFLVTWVIVIGETITLASPNGQTFLSNGEWIRYLLLARMLRLIRLLMHVQQYRGFVATFLTLIPSLMPYLGTIFCVQCIYCSLGVQIFGGIVNAGNAKLEETDLADDDYLLFNFNDYPNGMVTLFNLLVMGNWQVWMQSYKELTGTAWTLAYFVSFYLITVLLLLNLVIAFVLEAFFAEMELESSEKCEEEDKDGEPRERRRRVGTKTRSQKVDVLLHHMLSAELQKSCDS

ccccccccccccccccccccccccccccccccccccHHcccccHHHHHHHHHHHHccccccccccccccccccHHHEEEEEHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccEEEEEEEEHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHEEEEEEEcccccccccccccccccEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHcccccccccHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHcccccHHHHHHHHHHHcccEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHcccccHHHHHHHcccccccHHHHHHHHHHHHHHHHccccc

ccHHHccccccccccccccccccccccccccccccHHHHcccHHHHHHHHHHHHHccccccHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHEEcccccHHHHHHHHHHHHHHHHHHHHHHHcHHHHccccHHHccHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEccccccccccccccHHHHHHHHHHHHHHcccccHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHcccHHHcccccccccccccccccccHHcccccccccccccccHHHHHHHHcccccccccccccccccccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEcccccccccccccccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHccccc

MEEDLLVSgeasgnnrnndnnrrrrgptalfrrrtdaitrgspyQKAAALVDLaedgiglpeeildrssfessAKFYFIFIKFDYIWSLNYFALIVLNFLETgvgtyscydreyyylgqlpyltgweSLVYEGITLVILIIHTffpityegspifwkSTYTRLKVLCLLILVADFLVYGlylspiafnflplriapyIRVVFFILNIRQLRDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAYVIFEDTVQGNMVFTSFGTTLYQMFVLFttsnnpdvwipaykasrWYCLFFVLYVLIGVYFVTNLILAVVYDSFKSQLAKQVSEMDRMRRRTLGKafnlidnynvgflNKEQCIKLFEELNkyrtlpnisreEFELIFDElddthdfkINLDEFADLCNAIALRfqkedvpscfenlpsiyhspfSEKLKAFIRSTKFGYMISIILIVNLVAVIVETTLDIQESSLQSVWQEVEFVFGWIYVLEMALKIYSYGFENywrdgqnrFDFLVTWVIVIGETitlaspngqtflsnGEWIRYLLLARMLRLIRLLMHVQQYRGFVATFLTLipslmpylgtIFCVQCIYCSLGVQIFGGivnagnakleetdladddyllfnfndypngMVTLFNLLVMGNWQVWMQSYKELTGTAWTLAYFVSFYLITVLLLLNLVIAFVLEAFFAEMelessekceeedkdgeprerrrrvgtktrSQKVDVLLHHMLSAELQKSCDS

meedllvsgeasgnnrnndnnrrrrgptalfrrrtdaitrgspyqKAAALVDLAEDGIGLPEEILDRSSFESSAKFYFIFIKFDYIWSLNYFALIVLNFLETGVGTYSCYDREYYYLGQLPYLTGWESLVYEGITLVILIIHTFFPITYEGSPIFWKSTYTRLKVLCLLILVADFLVYGLYLSPIAFNFLPLRIAPYIRVVFFILNIRQLRDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAYVIFEDTVQGNMVFTSFGTTLYQMFVLFTTSNNPDVWIPAYKASRWYCLFFVLYVLIGVYFVTNLILAVVYDSFKSQLAKQVSEMDRMRRRTLGKafnlidnynvgFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAIALRFQKEDVPSCFENLPSIYHSPFSEKLKAFIRSTKFGYMISIILIVNLVAVIVETTLDIQESSLQSVWQEVEFVFGWIYVLEMALKIYSYGFENYWRDGQNRFDFLVTWVIVIGETItlaspngqtflsNGEWIRYLLLARMLRLIRLLMHVQQYRGFVATFLTLIPSLMPYLGTIFCVQCIYCSLGVQIFGGIVNAGNAKLEETDLADDDYLLFNFNDYPNGMVTLFNLLVMGNWQVWMQSYKELTGTAWTLAYFVSFYLITVLLLLNLVIAFVLEAFFAEMelessekceeedkdgeprerrrrvgtktrsqkvdVLLHHmlsaelqkscds

MEEDLLVSGEASGnnrnndnnrrrrGPTALFRRRTDAITRGSPYQKAAALVDLAEDGIGLPEEILDRSSFESSAkfyfifikfdyiWSLNYFALIVLNFLETGVGTYSCYDREYYYLGQLPYLTGWESLVYEGITLVILIIHTFFPITYEGSPIFWKSTYTRLKVLCLLILVADFLVYGLYLSPIAFNFLPLRIAPYIRVVFFILNIRQLRDTLFVLAGMLGTYLNVlalgllfllfsswlaYVIFEDTVQGNMVFTSFGTTLYQMFVLFTTSNNPDVWIPAYKASRWYCLFFVLYVLIGVYFVTNLILAVVYDSFKSQLAKQVSEMDRMRRRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISReefelifdelddTHDFKINLDEFADLCNAIALRFQKEDVPSCFENLPSIYHSPFSEKLKAFIRSTKFGYMisiilivnlvavivETTLDIQESSLQSVWQEVEFVFGWIYVLEMALKIYSYGFENYWRDGQNRFDFLVTWVIVIGETITLASPNGQTFLSNGEWIrylllarmlrlirllMHVQQYRGFVATFLTLIPSLMPYLGTIFCVQCIYCSLGVQIFGGIVNAGNAKLEETDLADDDYLLFNFNDYPNGMVTLFNLLVMGNWQVWMQSYKELTGTAWTLAYFVSFYlitvllllnlviafvlEAFFAemelessekceeedkdgeprerrrrvgtktrSQKVDVLLHHMLSAELQKSCDS

*******************************************YQKAAALVDLAEDGIGLPEEILDRSSFESSAKFYFIFIKFDYIWSLNYFALIVLNFLETGVGTYSCYDREYYYLGQLPYLTGWESLVYEGITLVILIIHTFFPITYEGSPIFWKSTYTRLKVLCLLILVADFLVYGLYLSPIAFNFLPLRIAPYIRVVFFILNIRQLRDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAYVIFEDTVQGNMVFTSFGTTLYQMFVLFTTSNNPDVWIPAYKASRWYCLFFVLYVLIGVYFVTNLILAVVYDSFKSQLAKQV****RMRRRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAIALRFQKEDVPSCFENLPSIYHSPFSEKLKAFIRSTKFGYMISIILIVNLVAVIVETTLDIQESSLQSVWQEVEFVFGWIYVLEMALKIYSYGFENYWRDGQNRFDFLVTWVIVIGETITLASPNGQTFLSNGEWIRYLLLARMLRLIRLLMHVQQYRGFVATFLTLIPSLMPYLGTIFCVQCIYCSLGVQIFGGIVNAGNAKLEETDLADDDYLLFNFNDYPNGMVTLFNLLVMGNWQVWMQSYKELTGTAWTLAYFVSFYLITVLLLLNLVIAFVLEAFFAE****************************************************

**********************************************AAALVDLAEDGIGLPEEILDRSSFESSAKFYFIFIKFDYIWSLNYFALIVLNFLETGVGTYSCYDREYYYLGQLPYLTGWESLVYEGITLVILIIHTFFPITYEGSPIFWKSTYTRLKVLCLLILVADFLVYGLYLSPIAFNFLPLRIAPYIRVVFFILNIRQLRDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAYVIFEDTVQGNMVFTSFGTTLYQMFVLFTTSNNPDVWIPAYKASRWYCLFFVLYVLIGVYFVTNLILAVVYDSFKSQLAKQVSEMDRMRRRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFEL****************EFADLCNAIALRFQK****SCFENLPSIYHSPFSEKLKAFIRSTKFGYMISIILIVNLVAVIVETTLDIQESSLQSVWQEVEFVFGWIYVLEMALKIYSYGFENYWRDGQNRFDFLVTWVIVIGETITLASPNGQTFLSNGEWIRYLLLARMLRLIRLLMHVQQYRGFVATFLTLIPSLMPYLGTIFCVQCIYCSLGVQIFGGIVNAGNAKLEETDLADDDYLLFNFNDYPNGMVTLFNLLVMGNWQVWMQSYKELTGTAWTLAYFVSFYLITVLLLLNLVIAFVLEAFFA*****************************************************

********************************RRTDAITRGSPYQKAAALVDLAEDGIGLPEEILDRSSFESSAKFYFIFIKFDYIWSLNYFALIVLNFLETGVGTYSCYDREYYYLGQLPYLTGWESLVYEGITLVILIIHTFFPITYEGSPIFWKSTYTRLKVLCLLILVADFLVYGLYLSPIAFNFLPLRIAPYIRVVFFILNIRQLRDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAYVIFEDTVQGNMVFTSFGTTLYQMFVLFTTSNNPDVWIPAYKASRWYCLFFVLYVLIGVYFVTNLILAVVYDSFKSQLAKQVSEMDRMRRRTLGKAFNLIDNYNVGFLNKEQCIK********************************KI*LDEFADLCNAIALRFQKEDVPSCFENLPSIYHSPFSEKLKAFIRSTKFGYMISIILIVNLVAVIVETTLDIQESSLQSVWQEVEFVFGWIYVLEMALKIYSYGFENYWRDGQNRFDFLVTWVIVIGETITLASPNGQTFLSNGEWIRYLLLARMLRLIRLLMHVQQYRGFVATFLTLIPSLMPYLGTIFCVQCIYCSLGVQIFGGIVNAGNAKLEETDLADDDYLLFNFNDYPNGMVTLFNLLVMGNWQVWMQSYKELTGTAWTLAYFVSFYLITVLLLLNLVIAFVLEAFFAEMELESSEKCEEEDKDGEPR****************VLL*H***AEL******

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		738	2.2.26 [Sep-21-2011]
Q94KI8		733	Two pore calcium channel	yes	no	0.949	0.956	0.734	0.0
Q75VR1		735	Two pore calcium channel	N/A	no	0.983	0.987	0.710	0.0
Q75VR0		735	Two pore calcium channel	N/A	no	0.985	0.989	0.711	0.0
Q5QM84		757	Two pore calcium channel	yes	no	0.945	0.922	0.642	0.0
Q6YLX9		742	Two pore calcium channel	N/A	no	0.987	0.982	0.605	0.0
Q6S5H8		742	Two pore calcium channel	N/A	no	0.987	0.982	0.604	0.0
Q9ULQ1		816	Two pore calcium channel	yes	no	0.579	0.524	0.282	3e-38
Q9WTN5		817	Two pore calcium channel	yes	no	0.578	0.522	0.277	7e-38
Q9EQJ0		817	Two pore calcium channel	yes	no	0.573	0.517	0.277	3e-37
Q8BWC0		731	Two pore calcium channel	no	no	0.668	0.674	0.261	9e-36

>sp\|Q94KI8\|TPC1_ARATH Two pore calcium channel protein 1 OS=Arabidopsis thaliana GN=TPC1 PE=1 SV=1	Back alignment and function desciption

 Score = 1073 bits (2774), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 519/707 (73%), Positives = 601/707 (85%), Gaps = 6/707 (0%)

Query: 33  RRTDAITRGSPYQKAAALVDLAEDGIGLPEEILDRSSFESSAKFYFIFIKFDYIWSLNYF 92
           RR++AIT G+P+QKAAALVDLAEDGIGLP EILD+SSF  SA++YFIF + D IWSLNYF
Sbjct: 20  RRSEAITHGTPFQKAAALVDLAEDGIGLPVEILDQSSFGESARYYFIFTRLDLIWSLNYF 79

Query: 93  ALIVLNFLETGV-----GTYSCYDREYYYLGQLPYLTGWESLVYEGITLVILIIHTFFPI 147
           AL+ LNF E  +        SC DR+YYYLG+LPYLT  ES++YE ITL IL++HTFFPI
Sbjct: 80  ALLFLNFFEQPLWCEKNPKPSCKDRDYYYLGELPYLTNAESIIYEVITLAILLVHTFFPI 139

Query: 148 TYEGSPIFWKSTYTRLKVLCLLILVADFLVYGLYLSPIAFNFLPLRIAPYIRVVFFILNI 207
           +YEGS IFW S    +KV C++IL  D LV  LYLSP+AF+FLP RIAPY+RV+ FIL+I
Sbjct: 140 SYEGSRIFWTSRLNLVKVACVVILFVDVLVDFLYLSPLAFDFLPFRIAPYVRVIIFILSI 199

Query: 208 RQLRDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAYVIFEDTVQGNMVFTSFGTTLYQMF 267
           R+LRDTL +L+GMLGTYLN+LAL +LFLLF+SW+A+V+FEDT QG  VFTS+G TLYQMF
Sbjct: 200 RELRDTLVLLSGMLGTYLNILALWMLFLLFASWIAFVMFEDTQQGLTVFTSYGATLYQMF 259

Query: 268 VLFTTSNNPDVWIPAYKASRWYCLFFVLYVLIGVYFVTNLILAVVYDSFKSQLAKQVSEM 327
           +LFTTSNNPDVWIPAYK+SRW  +FFVLYVLIGVYFVTNLILAVVYDSFK QLAKQVS M
Sbjct: 260 ILFTTSNNPDVWIPAYKSSRWSSVFFVLYVLIGVYFVTNLILAVVYDSFKEQLAKQVSGM 319

Query: 328 DRMRRRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTH 387
           D+M+RR L KAF LID+   G ++K QCIKLFE+L  YRTLP IS+EEF LIFDELDDT 
Sbjct: 320 DQMKRRMLEKAFGLIDSDKNGEIDKNQCIKLFEQLTNYRTLPKISKEEFGLIFDELDDTR 379

Query: 388 DFKINLDEFADLCNAIALRFQKEDVPSCFENLPSIYHSPFSEKLKAFIRSTKFGYMISII 447
           DFKIN DEFADLC AIALRFQKE+VPS FE+ P IYHS  S++L+AF+RS  FGY IS I
Sbjct: 380 DFKINKDEFADLCQAIALRFQKEEVPSLFEHFPQIYHSALSQQLRAFVRSPNFGYAISFI 439

Query: 448 LIVNLVAVIVETTLDIQESSLQSVWQEVEFVFGWIYVLEMALKIYSYGFENYWRDGQNRF 507
           LI+N +AV+VETTLDI+ESS Q  WQ  EFVFGWIYVLEMALKIY+YGFENYWR+G NRF
Sbjct: 440 LIINFIAVVVETTLDIEESSAQKPWQVAEFVFGWIYVLEMALKIYTYGFENYWREGANRF 499

Query: 508 DFLVTWVIVIGETITLASPNGQTFLSNGEWIRYLLLARMLRLIRLLMHVQQYRGFVATFL 567
           DFLVTWVIVIGET T  +P+  TF SNGEWIRYLLLARMLRLIRLLM+VQ+YR F+ATF+
Sbjct: 500 DFLVTWVIVIGETATFITPDENTFFSNGEWIRYLLLARMLRLIRLLMNVQRYRAFIATFI 559

Query: 568 TLIPSLMPYLGTIFCVQCIYCSLGVQIFGGIVNAGNAKLEETDLADDDYLLFNFNDYPNG 627
           TLIPSLMPYLGTIFCV CIYCS+GVQ+FGG+VNAGN KL ET+LA+DDYLLFNFNDYPNG
Sbjct: 560 TLIPSLMPYLGTIFCVLCIYCSIGVQVFGGLVNAGNKKLFETELAEDDYLLFNFNDYPNG 619

Query: 628 MVTLFNLLVMGNWQVWMQSYKELTGTAWTLAYFVSFYLITVLLLLNLVIAFVLEAFFAEM 687
           MVTLFNLLVMGNWQVWM+SYK+LTGT W++ YFVSFY+IT+LLLLNLV+AFVLEAFF E+
Sbjct: 620 MVTLFNLLVMGNWQVWMESYKDLTGTWWSITYFVSFYVITILLLLNLVVAFVLEAFFTEL 679

Query: 688 ELESSEKCEEEDKDGEPRERRRRVGTKTRSQKVDVLLHHMLSAELQK 734
           +LE  EKC+ +D   E R RRR  G+K+RSQ+VD LLHHML  EL K
Sbjct: 680 DLEEEEKCQGQDSQ-EKRNRRRSAGSKSRSQRVDTLLHHMLGDELSK 725

Functions as a voltage-gated inward-rectifying Ca(2+) channel (VDCC) across the vacuole membrane. Is one of the essential components of the slow vacuolar (SV) channel. Acts as the major ROS-responsive Ca(2+) channel and is the possible target of Al-dependent inhibition. Involved in the regulation of germination and stomatal movement.
Arabidopsis thaliana (taxid: 3702)

>sp\|Q75VR1\|TPC1A_TOBAC Two pore calcium channel protein 1A OS=Nicotiana tabacum GN=TPC1A PE=2 SV=1	Back alignment and function description

>sp\|Q75VR0\|TPC1B_TOBAC Two pore calcium channel protein 1B OS=Nicotiana tabacum GN=TPC1B PE=2 SV=1	Back alignment and function description

>sp\|Q5QM84\|TPC1_ORYSJ Two pore calcium channel protein 1 OS=Oryza sativa subsp. japonica GN=TPC1 PE=1 SV=2	Back alignment and function description

>sp\|Q6YLX9\|TPC1_WHEAT Two pore calcium channel protein 1 OS=Triticum aestivum GN=TPC1 PE=2 SV=1	Back alignment and function description

>sp\|Q6S5H8\|TPC1_HORVU Two pore calcium channel protein 1 OS=Hordeum vulgare GN=TPC1 PE=2 SV=1	Back alignment and function description

>sp\|Q9ULQ1\|TPC1_HUMAN Two pore calcium channel protein 1 OS=Homo sapiens GN=TPCN1 PE=1 SV=3	Back alignment and function description

>sp\|Q9WTN5\|TPC1_RAT Two pore calcium channel protein 1 OS=Rattus norvegicus GN=Tpcn1 PE=1 SV=2	Back alignment and function description

>sp\|Q9EQJ0\|TPC1_MOUSE Two pore calcium channel protein 1 OS=Mus musculus GN=Tpcn1 PE=2 SV=1	Back alignment and function description

>sp\|Q8BWC0\|TPC2_MOUSE Two pore calcium channel protein 2 OS=Mus musculus GN=Tpcn2 PE=1 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		738
302143292		732	unnamed protein product [Vitis vinifera]	0.976	0.984	0.737	0.0
18412295		733	two pore calcium channel protein 1 [Arab	0.949	0.956	0.734	0.0
449438094		738	PREDICTED: two pore calcium channel prot	0.947	0.947	0.754	0.0
14041819		733	two-pore calcium channel [Arabidopsis th	0.949	0.956	0.729	0.0
255553747		743	Voltage-dependent L-type calcium channel	0.932	0.925	0.775	0.0
75326539		735	RecName: Full=Two pore calcium channel p	0.983	0.987	0.710	0.0
224121708		726	predicted protein [Populus trichocarpa]	0.967	0.983	0.75	0.0
297813953		732	two-pore channel 1 [Arabidopsis lyrata s	0.966	0.974	0.728	0.0
75326538		735	RecName: Full=Two pore calcium channel p	0.985	0.989	0.711	0.0
4206210		724	putative calcium channel [Arabidopsis th	0.926	0.944	0.707	0.0

>gi\|302143292\|emb\|CBI21853.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

 Score = 1074 bits (2778), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 542/735 (73%), Positives = 631/735 (85%), Gaps = 14/735 (1%)

Query: 6   LVSGEASGNNRNNDNNRRRRGPTALFRRRTDAITRGSPYQKAAALVDLAEDGIGLPEEIL 65
           L+ GE+SG         RRRG T +F RR+DAI  GSPYQKAAALVDLAEDGIGLPE++L
Sbjct: 5   LLDGESSGG--------RRRGQTPVFHRRSDAIAYGSPYQKAAALVDLAEDGIGLPEQML 56

Query: 66  DRSSFESSAKFYFIFIKFDYIWSLNYFALIVLNFLETGV-----GTYSCYDREYYYLGQL 120
           D+ SFES+AKFYFIFI+F+++WSLN FALIVLNFLE  +      TYSC DREYY+LGQL
Sbjct: 57  DQESFESAAKFYFIFIRFNFLWSLNLFALIVLNFLEKPLWCAKQTTYSCNDREYYFLGQL 116

Query: 121 PYLTGWESLVYEGITLVILIIHTFFPITYEGSPIFWKSTYTRLKVLCLLILVADFLVYGL 180
           PYLT  ESL+YEGITLVI+++HTFFPI+YEGS I+WK+   RLKV+ L ILVAD LVY L
Sbjct: 117 PYLTSVESLIYEGITLVIILLHTFFPISYEGSQIYWKNPLNRLKVILLSILVADLLVYVL 176

Query: 181 YLSPIAFNFLPLRIAPYIRVVFFILNIRQLRDTLFVLAGMLGTYLNVLALGLLFLLFSSW 240
           YLSP+ F +LP R+APYIRV+  ILNIR++R T+ +LAGMLGTYLN++ALGLLFLLF+SW
Sbjct: 177 YLSPLPFYYLPFRLAPYIRVILCILNIREVRATMVILAGMLGTYLNIMALGLLFLLFASW 236

Query: 241 LAYVIFEDTVQGNMVFTSFGTTLYQMFVLFTTSNNPDVWIPAYKASRWYCLFFVLYVLIG 300
           +AYV+FEDT QG  VFTS+ TTLYQMF+LFTTSNNPDVWIPAYK SRWYCLFFVLY+L+G
Sbjct: 237 VAYVMFEDTQQGKTVFTSYLTTLYQMFILFTTSNNPDVWIPAYKVSRWYCLFFVLYMLLG 296

Query: 301 VYFVTNLILAVVYDSFKSQLAKQVSEMDRMRRRTLGKAFNLIDNYNVGFLNKEQCIKLFE 360
           VYF+TNLILAV+YDSFK+QLAKQV+EMDRMRRR L KAFNLID  N+GFL KEQCI LFE
Sbjct: 297 VYFMTNLILAVIYDSFKNQLAKQVAEMDRMRRRILEKAFNLIDKSNLGFLKKEQCIHLFE 356

Query: 361 ELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAIALRFQKEDVPSCFENLP 420
           ELNKYR+LP ISRE+FELIFDELDD++DFKINLDEF DLCNAI L FQKED  S FE  P
Sbjct: 357 ELNKYRSLPKISREDFELIFDELDDSNDFKINLDEFFDLCNAITLSFQKEDSQSWFERYP 416

Query: 421 SIYHSPFSEKLKAFIRSTKFGYMISIILIVNLVAVIVETTLDIQESSLQSVWQEVEFVFG 480
           S YHSP  EKLKAF+RS+ FG MI++IL++NLVAVI+ETTLDI+ +S Q VWQ+VEFV G
Sbjct: 417 SFYHSPACEKLKAFVRSSIFGNMIAVILVLNLVAVIIETTLDIENNSAQKVWQKVEFVLG 476

Query: 481 WIYVLEMALKIYSYGFENYWRDGQNRFDFLVTWVIVIGETITLASPNGQTFLSNGEWIRY 540
           WIYVLEMALK++++GF+NYWRD  NRFDF +TW+IVIGET T  +P+  +FLSNGEWIRY
Sbjct: 477 WIYVLEMALKVFAFGFKNYWRDDSNRFDFFITWIIVIGETATFVAPSSLSFLSNGEWIRY 536

Query: 541 LLLARMLRLIRLLMHVQQYRGFVATFLTLIPSLMPYLGTIFCVQCIYCSLGVQIFGGIVN 600
           LLLARMLRLIRLLM V+QYR F+ATFL LIPSLMPYLGTIFCV CIYCSLGVQIFGGIVN
Sbjct: 537 LLLARMLRLIRLLMRVKQYRAFIATFLNLIPSLMPYLGTIFCVLCIYCSLGVQIFGGIVN 596

Query: 601 AGNAKLEETDLADDDYLLFNFNDYPNGMVTLFNLLVMGNWQVWMQSYKELTGTAWTLAYF 660
            GN+ LE TDL + DYLLFNFNDYPNGMVTLFNLLVM NWQVWMQSYK+LTGT+WTL YF
Sbjct: 597 NGNSNLEGTDLEESDYLLFNFNDYPNGMVTLFNLLVMNNWQVWMQSYKDLTGTSWTLVYF 656

Query: 661 VSFYLITVLLLLNLVIAFVLEAFFAEMELESSEKCEEEDKDGEPRERRRRVGTKTRSQKV 720
           +S+YL+TVLLLLNLV+AFVLEAFFAEM+LE SE C E+ K+   ++ RR   ++ RSQ+V
Sbjct: 657 ISYYLLTVLLLLNLVVAFVLEAFFAEMDLEKSENCGEDGKEAGEKQ-RRYTRSRIRSQRV 715

Query: 721 DVLLHHMLSAELQKS 735
           D+LLHHMLSAEL ++
Sbjct: 716 DILLHHMLSAELNQT 730

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18412295|ref|NP_567258.1| two pore calcium channel protein 1 [Arabidopsis thaliana] gi|75166464|sp|Q94KI8.1|TPC1_ARATH RecName: Full=Two pore calcium channel protein 1; AltName: Full=Calcium channel protein 1; Short=AtCCH1; AltName: Full=Fatty acid oxygenation up-regulated protein 2; AltName: Full=Voltage-dependent calcium channel protein TPC1; Short=AtTPC1 gi|13786069|gb|AAK39554.1|AF360372_1 putative calcium channel [Arabidopsis thaliana] gi|222422931|dbj|BAH19452.1| AT4G03560 [Arabidopsis thaliana] gi|332656937|gb|AEE82337.1| two pore calcium channel protein 1 [Arabidopsis thaliana]

Back alignment and taxonomy information

>gi\|449438094\|ref\|XP_004136825.1\| PREDICTED: two pore calcium channel protein 1-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|14041819\|dbj\|BAB55460.1\| two-pore calcium channel [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|255553747\|ref\|XP_002517914.1\| Voltage-dependent L-type calcium channel, putative [Ricinus communis] gi\|223542896\|gb\|EEF44432.1\| Voltage-dependent L-type calcium channel, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|75326539\|sp\|Q75VR1.1\|TCP1A_TOBAC RecName: Full=Two pore calcium channel protein 1A; AltName: Full=Voltage-dependent calcium channel protein TPC1A; Short=NtTPC1A gi\|46275792\|dbj\|BAD15099.1\| two-pore calcium channel [Nicotiana tabacum]	Back alignment and taxonomy information

>gi\|224121708\|ref\|XP_002330633.1\| predicted protein [Populus trichocarpa] gi\|222872237\|gb\|EEF09368.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|297813953\|ref\|XP_002874860.1\| two-pore channel 1 [Arabidopsis lyrata subsp. lyrata] gi\|297320697\|gb\|EFH51119.1\| two-pore channel 1 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|75326538\|sp\|Q75VR0.1\|TPC1B_TOBAC RecName: Full=Two pore calcium channel protein 1B; AltName: Full=Voltage-dependent calcium channel protein TPC1B; Short=NtTPC1B gi\|46275794\|dbj\|BAD15100.1\| two-pore calcium channel [Nicotiana tabacum]	Back alignment and taxonomy information

>gi\|4206210\|gb\|AAD11598.1\| putative calcium channel [Arabidopsis thaliana] gi\|4263043\|gb\|AAD15312.1\| putative calcium channel [Arabidopsis thaliana] gi\|7270679\|emb\|CAB77841.1\| putative calcium channel [Arabidopsis thaliana]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		738
TAIR\|locus:2128716		733	TPC1 "two-pore channel 1" [Ara	0.955	0.961	0.617	5.1e-232
UNIPROTKB\|J9JHA5		773	TPC3 "Uncharacterized protein"	0.707	0.675	0.246	1.6e-35
UNIPROTKB\|C4IXV8		768	TPC3 "Uncharacterized protein"	0.704	0.677	0.237	6.2e-35
UNIPROTKB\|E2QYG4		751	TPCN2 "Uncharacterized protein	0.758	0.745	0.248	3.2e-33
UNIPROTKB\|Q8NHX9		752	TPCN2 "Two pore calcium channe	0.753	0.739	0.244	3e-30
UNIPROTKB\|F1NSV9		742	TPCN2 "Uncharacterized protein	0.692	0.688	0.231	6e-29
UNIPROTKB\|E1BIB9		751	TPCN2 "Uncharacterized protein	0.757	0.744	0.241	6.8e-29
UNIPROTKB\|F1RY74		502	TPCN2 "Uncharacterized protein	0.532	0.782	0.266	2.8e-27
RGD\|1311779		730	Tpcn2 "two pore segment channe	0.627	0.634	0.246	3.9e-26
UNIPROTKB\|F1MSJ0		793	TPCN1 "Uncharacterized protein	0.684	0.636	0.231	3.7e-25

TAIR\|locus:2128716 TPC1 "two-pore channel 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 2238 (792.9 bits), Expect = 5.1e-232, P = 5.1e-232
 Identities = 440/712 (61%), Positives = 505/712 (70%)

Query:    33 RRTDAITRGSPYQKAAALVDLAEDGIGLPEEILDRSSFESSAXXXXXXXXXXXXWSLNYF 92
             RR++AIT G+P+QKAAALVDLAEDGIGLP EILD+SSF  SA            WSLNYF
Sbjct:    20 RRSEAITHGTPFQKAAALVDLAEDGIGLPVEILDQSSFGESARYYFIFTRLDLIWSLNYF 79

Query:    93 ALIVLNFLETGVGTY-----SCYDREYYYLGQLPYLTGWESLVYEGITLVILIIHTFFPI 147
             AL+ LNF E  +        SC DR+YYYLG+LPYLT  ES++YE ITL IL++HTFFPI
Sbjct:    80 ALLFLNFFEQPLWCEKNPKPSCKDRDYYYLGELPYLTNAESIIYEVITLAILLVHTFFPI 139

Query:   148 TYEGSPIFWKSTYTRLKVLCLLILVADFLVYGLYLSPIAFNFLPLRIAPYIRVVFFILNI 207
             +YEGS IFW S    +KV C++IL  D LV  LYLSP+AF+FLP RIAPY+RV+ FIL+I
Sbjct:   140 SYEGSRIFWTSRLNLVKVACVVILFVDVLVDFLYLSPLAFDFLPFRIAPYVRVIIFILSI 199

Query:   208 RQLRDTLFVLAGMLGTYLNVXXXXXXXXXXXXXXXYVIFEDTVQGNMVFTSFGTTLYQMF 267
             R+LRDTL +L+GMLGTYLN+               +V+FEDT QG  VFTS+G TLYQMF
Sbjct:   200 RELRDTLVLLSGMLGTYLNILALWMLFLLFASWIAFVMFEDTQQGLTVFTSYGATLYQMF 259

Query:   268 VLFTTSNNPDVWIPAYKASRWYCLFFVLYVLIGVYFVTNLILAVVYDSFKSQLAKQVSEM 327
             +LFTTSNNPDVWIPAYK+SRW  +FFVLYVLIGVYFVTNLILAVVYDSFK QLAKQVS M
Sbjct:   260 ILFTTSNNPDVWIPAYKSSRWSSVFFVLYVLIGVYFVTNLILAVVYDSFKEQLAKQVSGM 319

Query:   328 DRMRRRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISRXXXXXXXXXXXXTH 387
             D+M+RR L KAF LID+   G ++K QCIKLFE+L  YRTLP IS+            T 
Sbjct:   320 DQMKRRMLEKAFGLIDSDKNGEIDKNQCIKLFEQLTNYRTLPKISKEEFGLIFDELDDTR 379

Query:   388 DFKINLDEFADLCNAIALRFQKEDVPSCFENLPSIYHSPFSEKLKAFIRSTKFGYMXXXX 447
             DFKIN DEFADLC AIALRFQKE+VPS FE+ P IYHS  S++L+AF+RS  FGY     
Sbjct:   380 DFKINKDEFADLCQAIALRFQKEEVPSLFEHFPQIYHSALSQQLRAFVRSPNFGYAISFI 439

Query:   448 XXXXXXXXXXETTLDIQESSLQSVWQEVEFVFGWIYVLEMALKIYSYGFENYWRDGQNRF 507
                       ETTLDI+ESS Q  WQ  EFVFGWIYVLEMALKIY+YGFENYWR+G NRF
Sbjct:   440 LIINFIAVVVETTLDIEESSAQKPWQVAEFVFGWIYVLEMALKIYTYGFENYWREGANRF 499

Query:   508 DFLVTWVIVIGETITLASPNGQTFLSNGEWIXXXXXXXXXXXXXXXMHVQQYRGFVATFL 567
             DFLVTWVIVIGET T  +P+  TF SNGEWI               M+VQ+YR F+ATF+
Sbjct:   500 DFLVTWVIVIGETATFITPDENTFFSNGEWIRYLLLARMLRLIRLLMNVQRYRAFIATFI 559

Query:   568 TLIPSLMPYLGTIFCVQCIYCSLGVQIFGGIVNAGNAKLEETDLADDDYLLFNFNDYPNG 627
             TLIPSLMPYLGTIFCV CIYCS+GVQ+FGG+VNAGN KL ET+LA+DDYLLFNFNDYPNG
Sbjct:   560 TLIPSLMPYLGTIFCVLCIYCSIGVQVFGGLVNAGNKKLFETELAEDDYLLFNFNDYPNG 619

Query:   628 MVTLFNLLVMGNWQVWMQSYKELTGTAWTLAYFVSFYXXXXXXXXXXXXXXXXEAFFAXX 687
             MVTLFNLLVMGNWQVWM+SYK+LTGT W++ YFVSFY                EAFF   
Sbjct:   620 MVTLFNLLVMGNWQVWMESYKDLTGTWWSITYFVSFYVITILLLLNLVVAFVLEAFFTEL 679

Query:   688 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXSQKVDVLLHHMLSAELQK-SCDS 738
                                          SQ+VD LLHHML  EL K  C +
Sbjct:   680 DLEEEEKCQGQDSQEKRNRRRSAGSKSR-SQRVDTLLHHMLGDELSKPECST 730

GO:0005216 "ion channel activity" evidence=IEA

GO:0005262 "calcium channel activity" evidence=IGI;ISS;IMP

GO:0005509 "calcium ion binding" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005245 "voltage-gated calcium channel activity" evidence=IGI;ISS

GO:0005886 "plasma membrane" evidence=TAS

GO:0006816 "calcium ion transport" evidence=IC;RCA;IMP

GO:0005773 "vacuole" evidence=IDA

GO:0000325 "plant-type vacuole" evidence=IDA

GO:0009845 "seed germination" evidence=IMP

GO:0010119 "regulation of stomatal movement" evidence=IMP

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0080141 "regulation of jasmonic acid biosynthetic process" evidence=IMP

GO:0019722 "calcium-mediated signaling" evidence=IMP

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0007033 "vacuole organization" evidence=RCA

GO:0009556 "microsporogenesis" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0052543 "callose deposition in cell wall" evidence=RCA

UNIPROTKB\|J9JHA5 TPC3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|C4IXV8 TPC3 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|E2QYG4 TPCN2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|Q8NHX9 TPCN2 "Two pore calcium channel protein 2" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|F1NSV9 TPCN2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|E1BIB9 TPCN2 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|F1RY74 TPCN2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

RGD\|1311779 Tpcn2 "two pore segment channel 2" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|F1MSJ0 TPCN1 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q75VR0	TPC1B_TOBAC	No assigned EC number	0.7112	0.9850	0.9891	N/A	no
Q75VR1	TPC1A_TOBAC	No assigned EC number	0.7108	0.9837	0.9877	N/A	no
Q6YLX9	TPC1_WHEAT	No assigned EC number	0.6056	0.9878	0.9824	N/A	no
Q5QM84	TPC1_ORYSJ	No assigned EC number	0.6422	0.9457	0.9220	yes	no
Q94KI8	TPC1_ARATH	No assigned EC number	0.7340	0.9498	0.9563	yes	no
Q6S5H8	TPC1_HORVU	No assigned EC number	0.6043	0.9878	0.9824	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	ATTPC1	ATTPC1 (TWO-PORE CHANNEL 1); calcium channel/ voltage-gated calcium channel; Encodes a depolarization-activated Ca(2+) channel. Anti-sense experiments with this gene as well as Sucrose-H(+) symporters and complementation of yeast sucrose uptake mutant cch1 suggest that this protein mediates a voltage-activated Ca(2+ )influx. Mutants lack detectable SV channel activity suggesting TPC1 is essential component of the SV channel. Patch clamp analysis of loss of function mutation indicates TPC1 does not affect Ca2+ signaling in response to abiotic and biotic stress. ; Functions as a voltage- [...] (733 aa)
		(Arabidopsis thaliana)
Predicted Functional Partners:
	ATCNGC11	ATCNGC11 (CYCLIC NUCLEOTIDE-GATED CHANNELS); calmodulin binding / cation channel/ cyclic nucleo [...] (621 aa)			•	0.649
	ATPCS2	ATPCS2 (phytochelatin synthase 2); glutathione gamma-glutamylcysteinyltransferase; Encodes a pr [...] (452 aa)			•	0.623
	CER5	CER5 (ECERIFERUM 5); ATPase, coupled to transmembrane movement of substances; Encodes an ABC tr [...] (687 aa)		•	•	0.616
	AT2G31800	ankyrin protein kinase, putative; ankyrin protein kinase, putative; FUNCTIONS IN- protein serin [...] (476 aa)			•	0.534
	ATKCO1	ATKCO1; calcium-activated potassium channel/ ion channel/ outward rectifier potassium channel; [...] (363 aa)			•	0.534
	AT3G50770	calmodulin-related protein, putative; calmodulin-related protein, putative; FUNCTIONS IN- calci [...] (205 aa)			•	0.508
	AT3G13330	binding; binding; FUNCTIONS IN- binding; LOCATED IN- cellular_component unknown; EXPRESSED IN- [...] (1781 aa)			•	0.467
	AT4G02480	AAA-type ATPase family protein; AAA-type ATPase family protein; FUNCTIONS IN- nucleoside-tripho [...] (1265 aa)	•			0.458
	CAX1	CAX1 (cation exchanger 1); calcium ion transmembrane transporter/ calcium-cation antiporter/ ca [...] (475 aa)			•	0.439
	AOS	AOS (ALLENE OXIDE SYNTHASE); allene oxide synthase/ hydro-lyase/ oxygen binding; Encodes a memb [...] (518 aa)			•	0.435

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		738
pfam00520		194	pfam00520, Ion_trans, Ion transport protein	7e-24
pfam00520		194	pfam00520, Ion_trans, Ion transport protein	9e-12
pfam13499		60	pfam13499, EF_hand_5, EF-hand domain pair	8e-05
cd00051		63	cd00051, EFh, EF-hand, calcium binding motif; A di	0.001
PLN03223		1634	PLN03223, PLN03223, Polycystin cation channel prot	0.002

>gnl\|CDD\|215968 pfam00520, Ion_trans, Ion transport protein	Back alignment and domain information

 Score = 99.3 bits (248), Expect = 7e-24
 Identities = 58/206 (28%), Positives = 91/206 (44%), Gaps = 14/206 (6%)

Query: 475 VEFVFGWIYVLEMALKIYSYGFE-NYWRDGQNRFDFLVTWVIVIGETITLASPNGQTFLS 533
           +++VF  I+ LEM LK  + GF+  Y+R   N  DFLV    ++   + L          
Sbjct: 2   LDYVFTVIFTLEMLLKFIALGFKRKYFRSPWNILDFLVVLPSLVSLILFL-------LGE 54

Query: 534 NGEWIRYLLLARMLRLIRLLMHVQQYRGFVATFLTLIPSLMPYLGTIFCVQCIYCSLGVQ 593
           +   +R L L R+LRL+RLL      R  + +    + SL+  L  +  +  I+  +GVQ
Sbjct: 55  DSGLLRVLRLLRLLRLLRLLRRFPGLRTLLQSLGRSLKSLLNLLLLLLLLLFIFAIIGVQ 114

Query: 594 IFGGIVNAGNAKLEETDLADDDYLLFNFNDYPNGMVTLFNLLVMGNWQVWMQSYKELTGT 653
           +FG     G          +      NF+ Y   ++ LF  L    W   M       GT
Sbjct: 115 LFG-----GELDKCCDKNENPINGNSNFDSYGEALLWLFRTLTTEGWGDVMYDTLV-PGT 168

Query: 654 AWTLAYFVSFYLITVLLLLNLVIAFV 679
                +FV F ++  +LLLNL+I  +
Sbjct: 169 VLGKIFFVIFIILGGVLLLNLLIGVI 194

This family contains Sodium, Potassium, Calcium ion channels. This family is 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some sub-families (e.g. Na channels) the domain is repeated four times, whereas in others (e.g. K channels) the protein forms as a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not the Pfam family due to it lacking the first four helices. Length = 194

>gnl\|CDD\|215968 pfam00520, Ion_trans, Ion transport protein	Back alignment and domain information

>gnl\|CDD\|222177 pfam13499, EF_hand_5, EF-hand domain pair	Back alignment and domain information

>gnl\|CDD\|238008 cd00051, EFh, EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands	Back alignment and domain information

>gnl\|CDD\|215637 PLN03223, PLN03223, Polycystin cation channel protein; Provisional	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		738
KOG2302		1956	consensus T-type voltage-gated Ca2+ channel, pore-	100.0
KOG2301		1592	consensus Voltage-gated Ca2+ channels, alpha1 subu	100.0
KOG2302		1956	consensus T-type voltage-gated Ca2+ channel, pore-	100.0
KOG2301		1592	consensus Voltage-gated Ca2+ channels, alpha1 subu	100.0
KOG3713		477	consensus Voltage-gated K+ channel KCNB/KCNC [Inor	99.97
PLN03223		1634	Polycystin cation channel protein; Provisional	99.94
KOG1545		507	consensus Voltage-gated shaker-like K+ channel KCN	99.92
KOG3713		477	consensus Voltage-gated K+ channel KCNB/KCNC [Inor	99.89
KOG3599		798	consensus Ca2+-modulated nonselective cation chann	99.87
PF00520		200	Ion_trans: Ion transport protein calcium channel s	99.87
PF00520		200	Ion_trans: Ion transport protein calcium channel s	99.86
PF08016		425	PKD_channel: Polycystin cation channel; InterPro:	99.85
PLN03223		1634	Polycystin cation channel protein; Provisional	99.8
KOG1545		507	consensus Voltage-gated shaker-like K+ channel KCN	99.77
KOG4390		632	consensus Voltage-gated A-type K+ channel KCND [In	99.76
KOG4390		632	consensus Voltage-gated A-type K+ channel KCND [In	99.63
PF08016		425	PKD_channel: Polycystin cation channel; InterPro:	99.47
KOG3599		798	consensus Ca2+-modulated nonselective cation chann	99.46
TIGR00870		743	trp transient-receptor-potential calcium channel p	99.21
TIGR00870		743	trp transient-receptor-potential calcium channel p	99.16
KOG1419		654	consensus Voltage-gated K+ channel KCNQ [Inorganic	99.1
KOG1419		654	consensus Voltage-gated K+ channel KCNQ [Inorganic	99.09
KOG3609		822	consensus Receptor-activated Ca2+-permeable cation	98.61
KOG3609		822	consensus Receptor-activated Ca2+-permeable cation	98.54
PLN03192		823	Voltage-dependent potassium channel; Provisional	98.38
KOG0510		929	consensus Ankyrin repeat protein [General function	98.33
PLN03192		823	Voltage-dependent potassium channel; Provisional	98.2
KOG0498		727	consensus K+-channel ERG and related proteins, con	97.34
KOG0510		929	consensus Ankyrin repeat protein [General function	97.25
KOG3614		1381	consensus Ca2+/Mg2+-permeable cation channels (LTR	97.2
KOG3676		782	consensus Ca2+-permeable cation channel OSM-9 and	97.15
KOG3733		566	consensus Mucolipidin and related proteins (TRML s	97.14
KOG3614		1381	consensus Ca2+/Mg2+-permeable cation channels (LTR	97.11
KOG3676		782	consensus Ca2+-permeable cation channel OSM-9 and	97.05
KOG3533		2706	consensus Inositol 1,4,5-trisphosphate receptor [S	96.83
KOG0498		727	consensus K+-channel ERG and related proteins, con	96.77
KOG3733		566	consensus Mucolipidin and related proteins (TRML s	96.75
PRK10537		393	voltage-gated potassium channel; Provisional	96.42
KOG3533		2706	consensus Inositol 1,4,5-trisphosphate receptor [S	96.37
KOG1420		1103	consensus Ca2+-activated K+ channel Slowpoke, alph	95.76
PF13499		66	EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A	94.03
PF07885		79	Ion_trans_2: Ion channel; InterPro: IPR013099 This	93.76
cd00213		88	S-100 S-100: S-100 domain, which represents the la	92.65
PRK10537		393	voltage-gated potassium channel; Provisional	91.51
cd05022		89	S-100A13 S-100A13: S-100A13 domain found in protei	91.41
smart00027		96	EH Eps15 homology domain. Pair of EF hand motifs t	91.2
COG5126		160	FRQ1 Ca2+-binding protein (EF-Hand superfamily) [S	90.02
cd05027		88	S-100B S-100B: S-100B domain found in proteins sim	89.63
cd00052		67	EH Eps15 homology domain; found in proteins implic	89.54
cd05026		93	S-100Z S-100Z: S-100Z domain found in proteins sim	89.53
KOG0500		536	consensus Cyclic nucleotide-gated cation channel C	89.15
cd05031		94	S-100A10_like S-100A10_like: S-100A10 domain found	89.02
cd05025		92	S-100A1 S-100A1: S-100A1 domain found in proteins	88.98
KOG0028		172	consensus Ca2+-binding protein (centrin/caltractin	88.3
cd05023		89	S-100A11 S-100A11: S-100A11 domain found in protei	87.45
KOG2243		5019	consensus Ca2+ release channel (ryanodine receptor	86.5
KOG3684		489	consensus Ca2+-activated K+ channel proteins (inte	85.27
KOG0027		151	consensus Calmodulin and related proteins (EF-Hand	84.88
cd00051		63	EFh EF-hand, calcium binding motif; A diverse supe	84.18
KOG0501		971	consensus K+-channel KCNQ [Inorganic ion transport	83.17
KOG0027		151	consensus Calmodulin and related proteins (EF-Hand	82.43
COG5126		160	FRQ1 Ca2+-binding protein (EF-Hand superfamily) [S	82.01
PTZ00183		158	centrin; Provisional	81.0
PF00036		29	EF-hand_1: EF hand; InterPro: IPR018248 Many calci	80.01

>KOG2302 consensus T-type voltage-gated Ca2+ channel, pore-forming alpha1I subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]	Back alignment and domain information

Probab=100.00  E-value=1.4e-67  Score=572.19  Aligned_cols=499  Identities=22%  Similarity=0.326  Sum_probs=413.7

Q ss_pred             ccCCCCCCCCCCccccccCCCCcccchhHHHHHHHHHHHHHHHHHHhHhhcch----hHHHhccccceehhhHHHHHHHH
Q 004667          100 LETGVGTYSCYDREYYYLGQLPYLTGWESLVYEGITLVILIIHTFFPITYEGS----PIFWKSTYTRLKVLCLLILVADF  175 (738)
Q Consensus       100 ~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~f~~e~~lk~~~~g~----~~y~~~~~n~~D~~ii~~~~i~~  175 (738)
                      .|.|+.....+.+-+-.+             -+++|+++|++|+.+|+++.|+    .+|+++.||.+|++++.++++|+
T Consensus      1143 lerp~i~~~s~EriFltl-------------snyIFtaIfV~Em~lKVVALGl~fge~aYl~ssWN~LDgflv~vsviDi 1209 (1956)
T KOG2302|consen 1143 LERPAIVEGSTERIFLTL-------------SNYIFTAIFVVEMTLKVVALGLYFGEQAYLRSSWNVLDGFLVAVSVIDI 1209 (1956)
T ss_pred             hcccccccCcceEEEEEe-------------cchHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHhhhHHHHHHHHHHH
Confidence            588875554443333211             2699999999999999998875    78999999999999999999999


Q ss_pred             HHHHhhcCCccc---ccchhhhhhhhHHHHHhhccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---
Q 004667          176 LVYGLYLSPIAF---NFLPLRIAPYIRVVFFILNIRQLRDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAYVIFEDT---  249 (738)
Q Consensus       176 i~~~~~~~~~~~---~~~~~r~~r~lR~lrli~~~~~lr~l~~~l~~s~~~i~~~~~l~~~~~~~fa~lg~~lF~~~---  249 (738)
                      ++.....+ ++.   .++++|++|.+||+|.+++.++++.++.||.+|+|+|++++++++.++++|+++|.++|.+.   
T Consensus      1210 lvs~asa~-g~kILgVlrvLRlLRtlRpLRviSra~glklVveTL~sSLkpIgnIvliccaffiiFgilgvqLFkgkfy~ 1288 (1956)
T KOG2302|consen 1210 LVSQASAG-GAKILGVLRVLRLLRTLRPLRVISRAPGLKLVVETLISSLKPIGNIVLICCAFFIIFGILGVQLFKGKFYH 1288 (1956)
T ss_pred             HHHHhhhh-hHHHHHHHHHHHHHHHhhHHHHHhhcccHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHhccccee
Confidence            99876421 111   35678889999999999999999999999999999999999999999999999999999842   


Q ss_pred             ----------------------cccccccccHHHHHHHHHHHHcCCCChhchH-----------HHhhcCcchhhHHHHH
Q 004667          250 ----------------------VQGNMVFTSFGTTLYQMFVLFTTSNNPDVWI-----------PAYKASRWYCLFFVLY  296 (738)
Q Consensus       250 ----------------------~~~~~~F~~~~~s~~~lf~~~t~~~w~dv~~-----------~~~~~~~~~~ifFi~~  296 (738)
                                            ....+||||.+.+++++|++.|-+||.++||           |+.++++|..+|||+|
T Consensus      1289 c~g~dtrnitnKSdc~aa~yRwvrhkyNfdnlgqalmSLFvLaSkDgWv~ImyDgldavavdqqPI~nhnpwmllYfIsf 1368 (1956)
T KOG2302|consen 1289 CLGVDTRNITNKSDCMAAPYRWVRHKYNFDNLGQALMSLFVLASKDGWVNIMYDGLDAVAVDQQPILNHNPWMLLYFISF 1368 (1956)
T ss_pred             ccccccccccchhhhcccchhhhhhhcccchHHHHHHHHHHHhcccchhhhhccchhhceeeeeccccCCcHHHHHHHHH
Confidence                                  0125789999999999999999999999985           6779999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCccCHHHHHHHHHHhhhccCCCCCChHHH
Q 004667          297 VLIGVYFVTNLILAVVYDSFKSQLAKQVSEMDRMRRRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEF  376 (738)
Q Consensus       297 ~~~~~~~~lnl~~avi~~~f~~~~~~~~~~~~~~~~~~l~~af~~l~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~  376 (738)
                      .+|..|+++|+|++|+.+||.+.++++.+++.++++++..+                       .+.+            
T Consensus      1369 llIvsffVlnmfVgvvvenfhKcrqhqe~EeArRreEKrLr-----------------------rlek------------ 1413 (1956)
T KOG2302|consen 1369 LLIVSFFVLNMFVGVVVENFHKCRQHQEAEEARRREEKRLR-----------------------RLEK------------ 1413 (1956)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------HHHH------------
Confidence            99999999999999999999998887766655443321111                       0000            


Q ss_pred             HhHhhhhcCCCCCCCChhhHHHHHHHHHhhhcccCCccccccCCCCcCcHHHHHHHhccccchHHHHHHHHHHHHHHHHH
Q 004667          377 ELIFDELDDTHDFKINLDEFADLCNAIALRFQKEDVPSCFENLPSIYHSPFSEKLKAFIRSTKFGYMISIILIVNLVAVI  456 (738)
Q Consensus       377 ~~~~~~ld~~~~~~i~~~ef~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~v~s~~f~~~i~~~i~ln~i~l~  456 (738)
                                                   +..+..++++...     .+..|+.++....+.+-+.+++++|.+|++++.
T Consensus      1414 -----------------------------krR~Aq~kpyyse-----yt~~rrlIh~~ctShyld~fit~ii~LnvVtms 1459 (1956)
T KOG2302|consen 1414 -----------------------------KRRAAQRKPYYSE-----YTMTRRLIHSKCTSHYLDQFITFIICLNVVTMS 1459 (1956)
T ss_pred             -----------------------------HHHhccCCccccc-----ccHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence                                         0001111111111     256789999999999999999999999999999


Q ss_pred             hhcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhcchhhhcccccchhhHHHHHHHHHHHHhhcCCCCccccchhh
Q 004667          457 VETTLDIQESSLQSVWQEVEFVFGWIYVLEMALKIYSYGFENYWRDGQNRFDFLVTWVIVIGETITLASPNGQTFLSNGE  536 (738)
Q Consensus       457 ~~~~~~~~~~~~~~~~~~i~~~f~~iF~iE~~lKi~a~g~~~y~~~~wn~fD~~ivi~~~i~~~~~~~~~~~~~~~~~~~  536 (738)
                      .+++  .++.+..+.+.+.++.|+.+|+.|.++|.++.|.++||+|.||.+|+.++++++.+..+.-... +.+.-.|+.
T Consensus      1460 ~ehy--qqp~sldealkycny~ft~vfV~EaV~klvafG~rrFfkdrwnqldlaivlls~mgitleeie~-naalpinpt 1536 (1956)
T KOG2302|consen 1460 EEHY--QQPTSLDEALKYCNYRFTAVFVLEAVLKLVAFGERRFFKDRWNQLDLAIVLLSVMGITLEEIEI-NAALPINPT 1536 (1956)
T ss_pred             HHHH--hCcccHHHHhhhcceeeeehhHHHHHHHHHHHhHHHHHhhhhhhhhHHHHHHHHhcccHhheee-cccCCCChH
Confidence            9986  4556778899999999999999999999999999999999999999999999998877653321 122335788


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCCCcccCccc
Q 004667          537 WIRYLLLARMLRLIRLLMHVQQYRGFVATFLTLIPSLMPYLGTIFCVQCIYCSLGVQIFGGIVNAGNAKLEETDLADDDY  616 (738)
Q Consensus       537 ~l~~lr~lR~lRllrl~~~~~~lr~l~~tl~~~~~~l~~~~~ll~~~~~ifAiiG~~lF~~~~~~~~~~~~~~~~~~~~~  616 (738)
                      ++|++|++|+.|++|+++...++|.++.|+++++|.+.++.++..+++||||.+|+++||...  ||.+.++.+...   
T Consensus      1537 iirimrvlriarvlkllkmatgmralldtvvqalpqvgnlgllfmllffiyaalgvelfg~le--c~e~npceglsr--- 1611 (1956)
T KOG2302|consen 1537 IIRIMRVLRIARVLKLLKMATGMRALLDTVVQALPQVGNLGLLFMLLFFIYAALGVELFGKLE--CNEENPCEGLSR--- 1611 (1956)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHhcccc--cCCCCCcccccc---
Confidence            999999999999999999999999999999999999999999999999999999999999874  444433333333   


Q ss_pred             cccCcCChhhhHHHHHHHhhccCHHHHHHHHHhhhC-------CcceeeehhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004667          617 LLFNFNDYPNGMVTLFNLLVMGNWQVWMQSYKELTG-------TAWTLAYFVSFYLITVLLLLNLVIAFVLEAFFAEMEL  689 (738)
Q Consensus       617 ~~~nF~~~~~s~~tLf~l~t~~~W~~im~~~~~~~~-------~~~~~iyFv~f~~i~~~i~lnLfvaviie~F~~~~~~  689 (738)
                       +..|.||+.||+|||++.||+||+.||.+....|.       ...+.+||++|.+...|+++|++|||++....+..++
T Consensus      1612 -hatf~nfgmafltlfrvstgdnwngimkdtlrdc~~e~~cls~~~sp~yfvsfvltaqfvlvnvvvavlmkhleesnke 1690 (1956)
T KOG2302|consen 1612 -HATFENFGMAFLTLFRVSTGDNWNGIMKDTLRDCTHEESCLSQFVSPLYFVSFVLTAQFVLVNVVVAVLMKHLEESNKE 1690 (1956)
T ss_pred             -ccchhhhchHhhhheeeccCCcccchhhhhHhhcccchhhhhhhccchhhhhhhhhhhhHHHHHHHHHHHHHHHhhchh
Confidence             47899999999999999999999999999876654       3678999999999999999999999999887765443


Q ss_pred             h
Q 004667          690 E  690 (738)
Q Consensus       690 ~  690 (738)
                      .
T Consensus      1691 a 1691 (1956)
T KOG2302|consen 1691 A 1691 (1956)
T ss_pred             h
Confidence            3

>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]	Back alignment and domain information

>KOG2302 consensus T-type voltage-gated Ca2+ channel, pore-forming alpha1I subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]	Back alignment and domain information

>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]	Back alignment and domain information

>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]	Back alignment and domain information

>PLN03223 Polycystin cation channel protein; Provisional	Back alignment and domain information

>KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism]	Back alignment and domain information

>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]	Back alignment and domain information

>KOG3599 consensus Ca2+-modulated nonselective cation channel polycystin [Inorganic ion transport and metabolism; Signal transduction mechanisms]	Back alignment and domain information

>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins	Back alignment and domain information

>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins	Back alignment and domain information

>PF08016 PKD_channel: Polycystin cation channel; InterPro: IPR013122 Polycystic kidney diseases (PKD) are disorders characterised by large numbers of cysts distributed throughout grossly-enlarged kidneys	Back alignment and domain information

>PLN03223 Polycystin cation channel protein; Provisional	Back alignment and domain information

>KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism]	Back alignment and domain information

>KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism]	Back alignment and domain information

>KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism]	Back alignment and domain information

>PF08016 PKD_channel: Polycystin cation channel; InterPro: IPR013122 Polycystic kidney diseases (PKD) are disorders characterised by large numbers of cysts distributed throughout grossly-enlarged kidneys	Back alignment and domain information

>KOG3599 consensus Ca2+-modulated nonselective cation channel polycystin [Inorganic ion transport and metabolism; Signal transduction mechanisms]	Back alignment and domain information

>TIGR00870 trp transient-receptor-potential calcium channel protein	Back alignment and domain information

>TIGR00870 trp transient-receptor-potential calcium channel protein	Back alignment and domain information

>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism]	Back alignment and domain information

>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism]	Back alignment and domain information

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]	Back alignment and domain information

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]	Back alignment and domain information

>PLN03192 Voltage-dependent potassium channel; Provisional	Back alignment and domain information

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]	Back alignment and domain information

>PLN03192 Voltage-dependent potassium channel; Provisional	Back alignment and domain information

>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]	Back alignment and domain information

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]	Back alignment and domain information

>KOG3614 consensus Ca2+/Mg2+-permeable cation channels (LTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]	Back alignment and domain information

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]	Back alignment and domain information

>KOG3733 consensus Mucolipidin and related proteins (TRML subfamily of transient receptor potential proteins) [Inorganic ion transport and metabolism]	Back alignment and domain information

>KOG3614 consensus Ca2+/Mg2+-permeable cation channels (LTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]	Back alignment and domain information

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]	Back alignment and domain information

>KOG3533 consensus Inositol 1,4,5-trisphosphate receptor [Signal transduction mechanisms]	Back alignment and domain information

>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]	Back alignment and domain information

>KOG3733 consensus Mucolipidin and related proteins (TRML subfamily of transient receptor potential proteins) [Inorganic ion transport and metabolism]	Back alignment and domain information

>PRK10537 voltage-gated potassium channel; Provisional	Back alignment and domain information

>KOG3533 consensus Inositol 1,4,5-trisphosphate receptor [Signal transduction mechanisms]	Back alignment and domain information

>KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]	Back alignment and domain information

>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E	Back alignment and domain information

>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria []	Back alignment and domain information

>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif	Back alignment and domain information

>PRK10537 voltage-gated potassium channel; Provisional	Back alignment and domain information

>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13	Back alignment and domain information

>smart00027 EH Eps15 homology domain	Back alignment and domain information

>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]	Back alignment and domain information

>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B	Back alignment and domain information

>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction	Back alignment and domain information

>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z	Back alignment and domain information

>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]	Back alignment and domain information

>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10	Back alignment and domain information

>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1	Back alignment and domain information

>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11	Back alignment and domain information

>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]	Back alignment and domain information

>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]	Back alignment and domain information

>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]	Back alignment and domain information

>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands	Back alignment and domain information

>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]	Back alignment and domain information

>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]	Back alignment and domain information

>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]	Back alignment and domain information

>PTZ00183 centrin; Provisional	Back alignment and domain information

>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		738
3rvy_A		285	ION transport protein; tetrameric ION channel, vol	2e-34
3rvy_A		285	ION transport protein; tetrameric ION channel, vol	1e-13
4dxw_A		229	Navrh, ION transport protein; tetrameric, voltage-	2e-31
4dxw_A		229	Navrh, ION transport protein; tetrameric, voltage-	4e-12
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-08
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-05
1wlz_A		105	DJBP, CAP-binding protein complex interacting prot	5e-06
2pmy_A		91	RAS and EF-hand domain-containing protein; rasef,	4e-05
2kgr_A		111	Intersectin-1; structure, alternative splicing, ca	4e-04
2sas_A		185	Sarcoplasmic calcium-binding protein; 2.40A {Branc	8e-04

>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 3rw0_A* Length = 285	Back alignment and structure

 Score =  131 bits (332), Expect = 2e-34
 Identities = 49/286 (17%), Positives = 109/286 (38%), Gaps = 36/286 (12%)

Query: 423 YHSPFSEKLKAFIRSTKFGYMISIILIVNLVAVIVETTLDIQESSLQSVWQEVEFVFGWI 482
             S    ++   + S+ F   I  ++++N + + +ET+      S          +   I
Sbjct: 15  RGSHMYLRITNIVESSFFTKFIIYLIVLNGITMGLETS-KTFMQSFGVYTTLFNQIVITI 73

Query: 483 YVLEMALKIYSYGFENYWRDGQNRFDFLVTWVIVIGETITLASPNGQTFLSNGEWIRYLL 542
           + +E+ L+IY +   ++++D  + FDF     +V             + +        L 
Sbjct: 74  FTIEIILRIYVHRI-SFFKDPWSLFDF----FVVAI-----------SLVPTSSGFEILR 117

Query: 543 LARMLRLIRLLMHVQQYRGFVATFLTLIPSLMPYLGTIFCVQCIYCSLGVQIFGGIVNAG 602
           + R+LRL RL+  V Q R  V+  +++IP ++  +  +     I+  +  Q+FG      
Sbjct: 118 VLRVLRLFRLVTAVPQMRKIVSALISVIPGMLSVIALMTLFFYIFAIMATQLFGERFPE- 176

Query: 603 NAKLEETDLADDDYLLFNFNDYPNGMVTLFNLLVMGNWQVWMQSYKELTGTAWTLAYFVS 662
                             F        TLF ++ + +W + +     +    +   +F+ 
Sbjct: 177 -----------------WFGTLGESFYTLFQVMTLESWSMGI-VRPLMEVYPYAWVFFIP 218

Query: 663 FYLITVLLLLNLVIAFVLEAFFAEMELESSEKCEEEDKDGEPRERR 708
           F  +   +++NLV+A  ++A     + E     +E     +     
Sbjct: 219 FIFVVTFVMINLVVAICVDAMAILNQKEEQHIIDEVQSHEDNINNE 264

PyMOL of 3rvy

>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 3rw0_A* Length = 285	Back alignment and structure

>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114} Length = 229	Back alignment and structure

>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114} Length = 229	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1wlz_A DJBP, CAP-binding protein complex interacting protein 1 isoform A; EF-hand like, unknown function; 1.60A {Homo sapiens} SCOP: a.39.1.7 Length = 105	Back alignment and structure

>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens} Length = 91	Back alignment and structure

>2kgr_A Intersectin-1; structure, alternative splicing, calcium, cell junction, cell projection, coiled coil, endocytosis, membrane, phosphoprotein; NMR {Homo sapiens} Length = 111	Back alignment and structure

>2sas_A Sarcoplasmic calcium-binding protein; 2.40A {Branchiostoma lanceolatum} SCOP: a.39.1.5 Length = 185	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		738
d1orsc_		132	f.14.1.1 (C:) Potassium channel KVAP {Archaeon Aer	1e-06
d1oqpa_		77	a.39.1.5 (A:) Caltractin (centrin 2) {Green algae	2e-06
d1rwya_		109	a.39.1.4 (A:) Parvalbumin {Rat (Rattus rattus) [Ta	4e-06
d2pvba_		107	a.39.1.4 (A:) Parvalbumin {Pike (Esox lucius) [Tax	7e-06
d1pvaa_		109	a.39.1.4 (A:) Parvalbumin {Pike (Esox lucius) [Tax	8e-06
d2opoa1		81	a.39.1.10 (A:6-86) Polcalcin Che a 3 {Pigweed (Che	9e-06
d5pala_		109	a.39.1.4 (A:) Parvalbumin {Leopard shark (Triakis	1e-05
d1rroa_		108	a.39.1.4 (A:) Oncomodulin {Rat (Rattus norvegicus)	3e-05
d2fcea1		61	a.39.1.5 (A:84-144) Calmodulin {Cow (Bos taurus) [	4e-05
d1fi5a_		81	a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus),	4e-05
d1c7va_		68	a.39.1.5 (A:) Calcium vector protein {Amphioxus (B	5e-05
d1s6ja_		87	a.39.1.5 (A:) Calcium-dependent protein kinase sk5	1e-04
d1f54a_		77	a.39.1.5 (A:) Calmodulin {Baker's yeast (Saccharom	1e-04
d1topa_		162	a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus)	2e-04
d2obha1		141	a.39.1.5 (A:26-166) Calmodulin {Human (Homo sapien	2e-04
d1fw4a_		65	a.39.1.5 (A:) Calmodulin {Cow (Bos taurus) [TaxId:	2e-04
d1ij5a_		321	a.39.1.9 (A:) Cbp40 (plasmodial specific CaII-bind	2e-04
d2pq3a1		73	a.39.1.5 (A:3-75) Calmodulin {Rattus norvegicus [T	2e-04
d1avsa_		81	a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus)	5e-04
d1dtla_		156	a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus)	5e-04
d1zfsa1		93	a.39.1.2 (A:1-93) Calcyclin (S100) {Rat (Rattus no	0.002
d1tiza_		67	a.39.1.5 (A:) Calmodulin-related protein T21P5.17	0.002
d1jc2a_		75	a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus)	0.003
d1yuta1		98	a.39.1.2 (A:1-98) Calcyclin (S100) {Human (Homo sa	0.003
d1a4pa_		92	a.39.1.2 (A:) Calcyclin (S100) {Human (Homo sapien	0.003
d1qjta_		99	a.39.1.6 (A:) Eps15 {Mouse (Mus musculus) [TaxId:	0.003
d3c1va1		93	a.39.1.2 (A:2-94) Calcyclin (S100) {Human (Homo sa	0.004

>d1orsc_ f.14.1.1 (C:) Potassium channel KVAP {Archaeon Aeropyrum pernix [TaxId: 56636]} Length = 132	Back information, alignment and structure


class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel KVAP
species: Archaeon Aeropyrum pernix [TaxId: 56636]

 Score = 46.1 bits (109), Expect = 1e-06
 Identities = 19/142 (13%), Positives = 49/142 (34%), Gaps = 12/142 (8%)

Query: 434 FIRSTKFGYMISIILIVNLVAVIVETTLDIQESSLQSVWQEVEFVFGWIYVLEMALKIYS 493
            +        +S   +++++ V+VE T+ +           V+ +   I   + A + Y 
Sbjct: 2   VMEHPLVELGVSYAALLSVIVVVVEYTMQLSGEY-LVRLYLVDLILVIILWADYAYRAYK 60

Query: 494 YGFENYWRDGQNRFDFLVTWVIVIGETITLASPNGQTFLSNGEWIRYLLLARMLRLIRLL 553
            G        +  ++              + +        +   +    L R+LR +R+L
Sbjct: 61  SGD-PAGYVKKTLYEIP----------ALVPAGLLALIEGHLAGLGLFRLVRLLRFLRIL 109

Query: 554 MHVQQYRGFVATFLTLIPSLMP 575
           + + +   F++        L+P
Sbjct: 110 LIISRGSKFLSAIADAADKLVP 131

PyMOL of d1orsc_

>d1oqpa_ a.39.1.5 (A:) Caltractin (centrin 2) {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 77	Back information, alignment and structure

>d1rwya_ a.39.1.4 (A:) Parvalbumin {Rat (Rattus rattus) [TaxId: 10117]} Length = 109	Back information, alignment and structure

>d2pvba_ a.39.1.4 (A:) Parvalbumin {Pike (Esox lucius) [TaxId: 8010]} Length = 107	Back information, alignment and structure

>d1pvaa_ a.39.1.4 (A:) Parvalbumin {Pike (Esox lucius) [TaxId: 8010]} Length = 109	Back information, alignment and structure

>d2opoa1 a.39.1.10 (A:6-86) Polcalcin Che a 3 {Pigweed (Chenopodium album) [TaxId: 3559]} Length = 81	Back information, alignment and structure

>d5pala_ a.39.1.4 (A:) Parvalbumin {Leopard shark (Triakis semifasciata) [TaxId: 30493]} Length = 109	Back information, alignment and structure

>d1rroa_ a.39.1.4 (A:) Oncomodulin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 108	Back information, alignment and structure

>d2fcea1 a.39.1.5 (A:84-144) Calmodulin {Cow (Bos taurus) [TaxId: 9913]} Length = 61	Back information, alignment and structure

>d1fi5a_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus), cardiac isoform [TaxId: 9031]} Length = 81	Back information, alignment and structure

>d1c7va_ a.39.1.5 (A:) Calcium vector protein {Amphioxus (Branchiostoma lanceolatum) [TaxId: 7740]} Length = 68	Back information, alignment and structure

>d1s6ja_ a.39.1.5 (A:) Calcium-dependent protein kinase sk5 CLD {Soybean (Glycine max) [TaxId: 3847]} Length = 87	Back information, alignment and structure

>d1f54a_ a.39.1.5 (A:) Calmodulin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 77	Back information, alignment and structure

>d1topa_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]} Length = 162	Back information, alignment and structure

>d2obha1 a.39.1.5 (A:26-166) Calmodulin {Human (Homo sapiens) [TaxId: 9606]} Length = 141	Back information, alignment and structure

>d1fw4a_ a.39.1.5 (A:) Calmodulin {Cow (Bos taurus) [TaxId: 9913]} Length = 65	Back information, alignment and structure

>d1ij5a_ a.39.1.9 (A:) Cbp40 (plasmodial specific CaII-binding protein LAV1-2) {Physarum polycephalum [TaxId: 5791]} Length = 321	Back information, alignment and structure

>d2pq3a1 a.39.1.5 (A:3-75) Calmodulin {Rattus norvegicus [TaxId: 10116]} Length = 73	Back information, alignment and structure

>d1avsa_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]} Length = 81	Back information, alignment and structure

>d1dtla_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]} Length = 156	Back information, alignment and structure

>d1zfsa1 a.39.1.2 (A:1-93) Calcyclin (S100) {Rat (Rattus norvegicus), s100a1 [TaxId: 10116]} Length = 93	Back information, alignment and structure

>d1tiza_ a.39.1.5 (A:) Calmodulin-related protein T21P5.17 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 67	Back information, alignment and structure

>d1jc2a_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]} Length = 75	Back information, alignment and structure

>d1yuta1 a.39.1.2 (A:1-98) Calcyclin (S100) {Human (Homo sapiens), s100a13 [TaxId: 9606]} Length = 98	Back information, alignment and structure

>d1a4pa_ a.39.1.2 (A:) Calcyclin (S100) {Human (Homo sapiens), P11 s100a10, calpactin [TaxId: 9606]} Length = 92	Back information, alignment and structure

>d1qjta_ a.39.1.6 (A:) Eps15 {Mouse (Mus musculus) [TaxId: 10090]} Length = 99	Back information, alignment and structure

>d3c1va1 a.39.1.2 (A:2-94) Calcyclin (S100) {Human (Homo sapiens), s100a4 [TaxId: 9606]} Length = 93	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		738
d1orsc_		132	Potassium channel KVAP {Archaeon Aeropyrum pernix	99.74
d1orsc_		132	Potassium channel KVAP {Archaeon Aeropyrum pernix	99.39
d1r3jc_		103	Potassium channel protein {Streptomyces coelicolor	98.48
d1xl4a2		116	Inward rectifier potassium channel kirbac3.1 {Magn	97.53
d1p7ba2		116	Inward rectifier potassium channel Kirbac1.1 {Burk	97.53
d2h8pc1		57	Potassium channel protein {Streptomyces coelicolor	97.42
d1r3jc_		103	Potassium channel protein {Streptomyces coelicolor	97.2
d1qv0a_		189	Calcium-regulated photoprotein {Hydrozoa (Obelia l	96.89
d1wlza1		83	DJ-1-binding protein, DJBP {Human (Homo sapiens) [	96.72
d1c07a_		95	Eps15 {Human (Homo sapiens) [TaxId: 9606]}	96.5
d1uhka1		187	Calcium-regulated photoprotein {Jellyfish (Aequore	96.42
d1fi6a_		92	Reps1 {Mouse (Mus musculus) [TaxId: 10090]}	96.36
d1oqpa_		77	Caltractin (centrin 2) {Green algae (Chlamydomonas	96.23
d1tiza_		67	Calmodulin-related protein T21P5.17 {Thale cress (	95.94
d1rroa_		108	Oncomodulin {Rat (Rattus norvegicus) [TaxId: 10116	95.91
d1rwya_		109	Parvalbumin {Rat (Rattus rattus) [TaxId: 10117]}	95.89
d5pala_		109	Parvalbumin {Leopard shark (Triakis semifasciata)	95.76
d2pvba_		107	Parvalbumin {Pike (Esox lucius) [TaxId: 8010]}	95.75
d1jc2a_		75	Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}	95.72
d1fi5a_		81	Troponin C {Chicken (Gallus gallus), cardiac isofo	95.67
d2opoa1		81	Polcalcin Che a 3 {Pigweed (Chenopodium album) [Ta	95.65
d1avsa_		81	Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}	95.65
d1wrka1		82	Troponin C {Human (Homo sapiens), cardiac isoform	95.64
d1xo5a_		180	Calcium- and integrin-binding protein, CIB {Human	95.63
d1fw4a_		65	Calmodulin {Cow (Bos taurus) [TaxId: 9913]}	95.62
d2sasa_		185	Sarcoplasmic calcium-binding protein {Amphioxus (B	95.61
d1pvaa_		109	Parvalbumin {Pike (Esox lucius) [TaxId: 8010]}	95.6
d1f54a_		77	Calmodulin {Baker's yeast (Saccharomyces cerevisia	95.48
d2pq3a1		73	Calmodulin {Rattus norvegicus [TaxId: 10116]}	95.43
d2jxca1		95	Eps15 {Human (Homo sapiens) [TaxId: 9606]}	95.28
d1c7va_		68	Calcium vector protein {Amphioxus (Branchiostoma l	95.25
d2fcea1		61	Calmodulin {Cow (Bos taurus) [TaxId: 9913]}	95.2
d1exra_		146	Calmodulin {Ciliate (Paramecium tetraurelia) [TaxI	95.09
d1topa_		162	Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}	94.97
d2mysc_		145	Myosin Regulatory Chain {Chicken (Gallus gallus) [	94.92
d1iq3a_		110	Pob1 {Human (Homo sapiens) [TaxId: 9606]}	94.91
d1dtla_		156	Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}	94.71
d2obha1		141	Calmodulin {Human (Homo sapiens) [TaxId: 9606]}	94.55
d1nyaa_		176	Calerythrin {Saccharopolyspora erythraea [TaxId: 1	94.52
d2scpa_		174	Sarcoplasmic calcium-binding protein {Sandworm (Ne	94.39
d1lkja_		146	Calmodulin {Baker's yeast (Saccharomyces cerevisia	94.36
d1qjta_		99	Eps15 {Mouse (Mus musculus) [TaxId: 10090]}	94.35
d1g8ia_		187	Frequenin (neuronal calcium sensor 1) {Human (Homo	94.11
d1a4pa_		92	Calcyclin (S100) {Human (Homo sapiens), P11 s100a1	93.84
d1m45a_		146	Myosin Light Chain Mlc1p {Baker's yeast (Saccharom	93.81
d1s6ja_		87	Calcium-dependent protein kinase sk5 CLD {Soybean	93.68
d1y1xa_		182	Programmed cell death 6 protein-like protein {Leis	93.54
d2mysb_		145	Myosin Essential Chain {Chicken (Gallus gallus) [T	93.43
d1zfsa1		93	Calcyclin (S100) {Rat (Rattus norvegicus), s100a1	93.09
d1w7jb1		139	Myosin Essential Chain {Human (Homo sapiens) [TaxI	92.88
d1ggwa_		140	Cdc4p {Fission yeast (Schizosaccharomyces pombe) [	92.61
d1bjfa_		181	Neurocalcin {Cow (Bos taurus) [TaxId: 9913]}	92.31
d1fpwa_		190	Frequenin (neuronal calcium sensor 1) {Baker's yea	92.24
d1qx2a_		76	Calbindin D9K {Cow (Bos taurus) [TaxId: 9913]}	92.13
d1wdcb_		142	Myosin Essential Chain {Bay scallop (Aequipecten i	91.8
d1hqva_		181	Apoptosis-linked protein alg-2 {Mouse (Mus musculu	91.12
d1auib_		165	Calcineurin regulatory subunit (B-chain) {Human (H	91.04
d1jbaa_		189	Guanylate cyclase activating protein 2, GCAP-2 {Co	91.02
d1omra_		201	Recoverin {Cow (Bos taurus) [TaxId: 9913]}	90.92
d1ij5a_		321	Cbp40 (plasmodial specific CaII-binding protein LA	90.57
d1snla_		99	Nucleobindin 1 (CALNUC) {Human (Homo sapiens) [Tax	89.87
d1jfja_		134	EHCABP {Entamoeba (Entamoeba histolytica) [TaxId:	88.67
d1s6ca_		178	Kchip1, Kv4 potassium channel-interacting protein	88.43
d2zfda1		183	Calcineurin B-like protein 2 {Thale cress (Arabido	87.48
d3c1va1		93	Calcyclin (S100) {Human (Homo sapiens), s100a4 [Ta	87.31
d1ksoa_		93	Calcyclin (S100) {Human (Homo sapiens), s100a3 [Ta	87.19
d1s6ia_		182	Calcium-dependent protein kinase sk5 CLD {Soybean	86.19
d1wdcc_		152	Myosin Regulatory Chain {Bay scallop (Aequipecten	84.8
d1cb1a_		78	Calbindin D9K {Pig (Sus scrofa) [TaxId: 9823]}	82.56
d1e8aa_		87	Calcyclin (S100) {Human (Homo sapiens), calgranuli	81.59
d1lnqa2		80	Potassium channel-related protein MthK {Archaeon M	81.13
d1juoa_		172	Sorcin {Human (Homo sapiens) [TaxId: 9606]}	80.62

>d1orsc_ f.14.1.1 (C:) Potassium channel KVAP {Archaeon Aeropyrum pernix [TaxId: 56636]}	Back information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel KVAP
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=99.74  E-value=1.1e-17  Score=115.00  Aligned_cols=129  Identities=15%  Similarity=0.193  Sum_probs=107.0

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCHHHHHHH
Q ss_conf             02230288999999999999888632322123335668999999999999999988987526313320444320369999
Q 004667          434 FIRSTKFGYMISIILIVNLVAVIVETTLDIQESSLQSVWQEVEFVFGWIYVLEMALKIYSYGFENYWRDGQNRFDFLVTW  513 (738)
Q Consensus       434 ~v~~~~f~~~i~~~i~ln~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~if~~E~~lKi~a~g~~~y~~~~wn~fD~iivi  513 (738)
                      +++||.|+..+.+++++|++.+++|+.... +......+.++|.++.++|++|+++|+++.|. .|....||++|++.++
T Consensus         2 ~i~~p~~e~~i~~lillnvi~~~let~~~~-~~~~~~~l~~~e~v~~~iF~~E~~lrl~~~~~-~~~~~~~~~iDl~ai~   79 (132)
T d1orsc_           2 VMEHPLVELGVSYAALLSVIVVVVEYTMQL-SGEYLVRLYLVDLILVIILWADYAYRAYKSGD-PAGYVKKTLYEIPALV   79 (132)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHHHHHHHSCC-CSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-TTTTTTTCGGGTGGGS
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCEECCCCHHHHHHHH
T ss_conf             330127999999999999999998814312-31166799999999999999999999995984-1315773149999999


Q ss_pred             HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999878760488886445514699999999999999999987757899999999998698
Q 004667          514 VIVIGETITLASPNGQTFLSNGEWIRYLLLARMLRLIRLLMHVQQYRGFVATFLTLIPSLM  574 (738)
Q Consensus       514 ~~~i~~i~~~~~~~~~~~~~~~~~~~~l~~lR~lRllrl~~~~~~lr~l~~tl~~~~~~l~  574 (738)
                      .+++.....          .....+|++|++|++|++|+.+..++++.+.+++.++.+.+.
T Consensus        80 p~~~~~~~~----------~~~~~lr~lR~~R~~R~lrl~~~~~~~~~ll~ai~~s~~~lv  130 (132)
T d1orsc_          80 PAGLLALIE----------GHLAGLGLFRLVRLLRFLRILLIISRGSKFLSAIADAADKLV  130 (132)
T ss_dssp             CHHHHHHHH----------HHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             999998600----------038999999999999999999999999999999999999645

PyMOL of d1orsc_

>d1orsc_ f.14.1.1 (C:) Potassium channel KVAP {Archaeon Aeropyrum pernix [TaxId: 56636]}	Back information, alignment and structure

>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}	Back information, alignment and structure

>d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]}	Back information, alignment and structure

>d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]}	Back information, alignment and structure

>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}	Back information, alignment and structure

>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}	Back information, alignment and structure

>d1qv0a_ a.39.1.5 (A:) Calcium-regulated photoprotein {Hydrozoa (Obelia longissima), obelin [TaxId: 32570]}	Back information, alignment and structure

>d1wlza1 a.39.1.7 (A:229-311) DJ-1-binding protein, DJBP {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1c07a_ a.39.1.6 (A:) Eps15 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1uhka1 a.39.1.5 (A:3-189) Calcium-regulated photoprotein {Jellyfish (Aequorea aequorea), aequorin [TaxId: 168712]}	Back information, alignment and structure

>d1fi6a_ a.39.1.6 (A:) Reps1 {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1oqpa_ a.39.1.5 (A:) Caltractin (centrin 2) {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}	Back information, alignment and structure

>d1tiza_ a.39.1.5 (A:) Calmodulin-related protein T21P5.17 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}	Back information, alignment and structure

>d1rroa_ a.39.1.4 (A:) Oncomodulin {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d1rwya_ a.39.1.4 (A:) Parvalbumin {Rat (Rattus rattus) [TaxId: 10117]}	Back information, alignment and structure

>d5pala_ a.39.1.4 (A:) Parvalbumin {Leopard shark (Triakis semifasciata) [TaxId: 30493]}	Back information, alignment and structure

>d2pvba_ a.39.1.4 (A:) Parvalbumin {Pike (Esox lucius) [TaxId: 8010]}	Back information, alignment and structure

>d1jc2a_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}	Back information, alignment and structure

>d1fi5a_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus), cardiac isoform [TaxId: 9031]}	Back information, alignment and structure

>d2opoa1 a.39.1.10 (A:6-86) Polcalcin Che a 3 {Pigweed (Chenopodium album) [TaxId: 3559]}	Back information, alignment and structure

>d1avsa_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}	Back information, alignment and structure

>d1wrka1 a.39.1.5 (A:4-85) Troponin C {Human (Homo sapiens), cardiac isoform [TaxId: 9606]}	Back information, alignment and structure

>d1xo5a_ a.39.1.5 (A:) Calcium- and integrin-binding protein, CIB {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1fw4a_ a.39.1.5 (A:) Calmodulin {Cow (Bos taurus) [TaxId: 9913]}	Back information, alignment and structure

>d2sasa_ a.39.1.5 (A:) Sarcoplasmic calcium-binding protein {Amphioxus (Branchiostoma lanceolatum) [TaxId: 7740]}	Back information, alignment and structure

>d1pvaa_ a.39.1.4 (A:) Parvalbumin {Pike (Esox lucius) [TaxId: 8010]}	Back information, alignment and structure

>d1f54a_ a.39.1.5 (A:) Calmodulin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d2pq3a1 a.39.1.5 (A:3-75) Calmodulin {Rattus norvegicus [TaxId: 10116]}	Back information, alignment and structure

>d2jxca1 a.39.1.6 (A:121-215) Eps15 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1c7va_ a.39.1.5 (A:) Calcium vector protein {Amphioxus (Branchiostoma lanceolatum) [TaxId: 7740]}	Back information, alignment and structure

>d2fcea1 a.39.1.5 (A:84-144) Calmodulin {Cow (Bos taurus) [TaxId: 9913]}	Back information, alignment and structure

>d1exra_ a.39.1.5 (A:) Calmodulin {Ciliate (Paramecium tetraurelia) [TaxId: 5888]}	Back information, alignment and structure

>d1topa_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}	Back information, alignment and structure

>d2mysc_ a.39.1.5 (C:) Myosin Regulatory Chain {Chicken (Gallus gallus) [TaxId: 9031]}	Back information, alignment and structure

>d1iq3a_ a.39.1.6 (A:) Pob1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1dtla_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}	Back information, alignment and structure

>d2obha1 a.39.1.5 (A:26-166) Calmodulin {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1nyaa_ a.39.1.5 (A:) Calerythrin {Saccharopolyspora erythraea [TaxId: 1836]}	Back information, alignment and structure

>d2scpa_ a.39.1.5 (A:) Sarcoplasmic calcium-binding protein {Sandworm (Nereis diversicolor) [TaxId: 126592]}	Back information, alignment and structure

>d1lkja_ a.39.1.5 (A:) Calmodulin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1qjta_ a.39.1.6 (A:) Eps15 {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1g8ia_ a.39.1.5 (A:) Frequenin (neuronal calcium sensor 1) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1a4pa_ a.39.1.2 (A:) Calcyclin (S100) {Human (Homo sapiens), P11 s100a10, calpactin [TaxId: 9606]}	Back information, alignment and structure

>d1m45a_ a.39.1.5 (A:) Myosin Light Chain Mlc1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1s6ja_ a.39.1.5 (A:) Calcium-dependent protein kinase sk5 CLD {Soybean (Glycine max) [TaxId: 3847]}	Back information, alignment and structure

>d1y1xa_ a.39.1.8 (A:) Programmed cell death 6 protein-like protein {Leishmania major [TaxId: 5664]}	Back information, alignment and structure

>d2mysb_ a.39.1.5 (B:) Myosin Essential Chain {Chicken (Gallus gallus) [TaxId: 9031]}	Back information, alignment and structure

>d1zfsa1 a.39.1.2 (A:1-93) Calcyclin (S100) {Rat (Rattus norvegicus), s100a1 [TaxId: 10116]}	Back information, alignment and structure

>d1w7jb1 a.39.1.5 (B:11-149) Myosin Essential Chain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ggwa_ a.39.1.5 (A:) Cdc4p {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}	Back information, alignment and structure

>d1bjfa_ a.39.1.5 (A:) Neurocalcin {Cow (Bos taurus) [TaxId: 9913]}	Back information, alignment and structure

>d1fpwa_ a.39.1.5 (A:) Frequenin (neuronal calcium sensor 1) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1qx2a_ a.39.1.1 (A:) Calbindin D9K {Cow (Bos taurus) [TaxId: 9913]}	Back information, alignment and structure

>d1wdcb_ a.39.1.5 (B:) Myosin Essential Chain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}	Back information, alignment and structure

>d1hqva_ a.39.1.8 (A:) Apoptosis-linked protein alg-2 {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1auib_ a.39.1.5 (B:) Calcineurin regulatory subunit (B-chain) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1jbaa_ a.39.1.5 (A:) Guanylate cyclase activating protein 2, GCAP-2 {Cow (Bos taurus) [TaxId: 9913]}	Back information, alignment and structure

>d1omra_ a.39.1.5 (A:) Recoverin {Cow (Bos taurus) [TaxId: 9913]}	Back information, alignment and structure

>d1ij5a_ a.39.1.9 (A:) Cbp40 (plasmodial specific CaII-binding protein LAV1-2) {Physarum polycephalum [TaxId: 5791]}	Back information, alignment and structure

>d1snla_ a.39.1.7 (A:) Nucleobindin 1 (CALNUC) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1jfja_ a.39.1.5 (A:) EHCABP {Entamoeba (Entamoeba histolytica) [TaxId: 5759]}	Back information, alignment and structure

>d1s6ca_ a.39.1.5 (A:) Kchip1, Kv4 potassium channel-interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d2zfda1 a.39.1.5 (A:32-214) Calcineurin B-like protein 2 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}	Back information, alignment and structure

>d3c1va1 a.39.1.2 (A:2-94) Calcyclin (S100) {Human (Homo sapiens), s100a4 [TaxId: 9606]}	Back information, alignment and structure

>d1ksoa_ a.39.1.2 (A:) Calcyclin (S100) {Human (Homo sapiens), s100a3 [TaxId: 9606]}	Back information, alignment and structure

>d1s6ia_ a.39.1.5 (A:) Calcium-dependent protein kinase sk5 CLD {Soybean (Glycine max) [TaxId: 3847]}	Back information, alignment and structure

>d1wdcc_ a.39.1.5 (C:) Myosin Regulatory Chain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}	Back information, alignment and structure

>d1cb1a_ a.39.1.1 (A:) Calbindin D9K {Pig (Sus scrofa) [TaxId: 9823]}	Back information, alignment and structure

>d1e8aa_ a.39.1.2 (A:) Calcyclin (S100) {Human (Homo sapiens), calgranulin C, s100a12 [TaxId: 9606]}	Back information, alignment and structure

>d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}	Back information, alignment and structure

>d1juoa_ a.39.1.8 (A:) Sorcin {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure