Citrus Sinensis ID: 004680
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 737 | 2.2.26 [Sep-21-2011] | |||||||
| Q9C888 | 762 | Phospholipase D epsilon O | yes | no | 0.979 | 0.947 | 0.644 | 0.0 | |
| Q43270 | 812 | Phospholipase D alpha 1 O | N/A | no | 0.966 | 0.876 | 0.431 | 1e-169 | |
| Q43007 | 812 | Phospholipase D alpha 1 O | no | no | 0.967 | 0.878 | 0.430 | 1e-169 | |
| Q70EW5 | 808 | Phospholipase D alpha 1 O | N/A | no | 0.976 | 0.891 | 0.428 | 1e-168 | |
| Q41142 | 808 | Phospholipase D alpha 1 O | N/A | no | 0.966 | 0.881 | 0.428 | 1e-167 | |
| P93400 | 808 | Phospholipase D alpha 1 O | N/A | no | 0.975 | 0.889 | 0.418 | 1e-167 | |
| O04865 | 809 | Phospholipase D alpha 1 O | N/A | no | 0.963 | 0.877 | 0.423 | 1e-167 | |
| Q9SSQ9 | 810 | Phospholipase D alpha 2 O | no | no | 0.964 | 0.877 | 0.426 | 1e-165 | |
| P86387 | 808 | Phospholipase D alpha 1 O | N/A | no | 0.966 | 0.881 | 0.422 | 1e-165 | |
| Q38882 | 810 | Phospholipase D alpha 1 O | no | no | 0.966 | 0.879 | 0.422 | 1e-165 |
| >sp|Q9C888|PLDE1_ARATH Phospholipase D epsilon OS=Arabidopsis thaliana GN=PLDEPSILON PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 984 bits (2545), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 481/746 (64%), Positives = 584/746 (78%), Gaps = 24/746 (3%)
Query: 3 LQCVFVNGKPTYVTIKIDNKKVAKTSHEHDRVWNQTFQILCAHP-ADATITITLKTKCSV 61
C+ K YVTIKI+ KKVAKTS E+DR+WNQTFQILCAHP D TITITLKT+CSV
Sbjct: 30 FNCICTKPKAAYVTIKINKKKVAKTSSEYDRIWNQTFQILCAHPVTDTTITITLKTRCSV 89
Query: 62 LGKIHIQALQIL-NEASLISGFFPLEMENGKPNPDLRLRFMLWFKPAAYEPTWGKIISNG 120
LG+ I A QIL + +++I+GFFPL +NG +L+L+ ++WF+PA EP W + +
Sbjct: 90 LGRFRISAEQILTSNSAVINGFFPLIADNGSTKRNLKLKCLMWFRPAYLEPGWCRALEEA 149
Query: 121 EFQGLRNASFPQRSNCHVKLYHDAHHSSSFEPPYD-LCGSPGKLWEDVYKAIEGAKHLIY 179
FQG+RNASFPQRSNC V LY DAHH ++F+P D + + LWEDVYKAIE A+HL+Y
Sbjct: 150 SFQGIRNASFPQRSNCRVVLYQDAHHKATFDPRVDDVPFNARNLWEDVYKAIESARHLVY 209
Query: 180 IAGWSLNPKMVLVRDSQTEIAHARGVQLGELLKHKAEEGVAVRIMLWDDETSLPIIKNKG 239
IAGW+LNP +VLVRD++TEI HA GV +GELLK K+EEGVAVR+MLW+DETSLP+IKNKG
Sbjct: 210 IAGWALNPNLVLVRDNETEIPHAVGVTVGELLKRKSEEGVAVRVMLWNDETSLPMIKNKG 269
Query: 240 VMRTHDEDAFAYFKHTKVICKLCPRLHHKFPTLFAHHQKTITVDARAQD-SIFDREIMSF 298
VMRT+ E A AYF++T V+C+LCPRLH K PT FAHHQKTIT+D R + S +REIMSF
Sbjct: 270 VMRTNVERALAYFRNTNVVCRLCPRLHKKLPTAFAHHQKTITLDTRVTNSSTKEREIMSF 329
Query: 299 VGGLDLCDGRYDTEKHSLFQTLNSESHCFDFYQINIAGASLHKGGPREPWHDVHACITGE 358
+GG DLCDGRYDTE+HSLF+TL +E+ DFYQ ++AGA L +GGPREPWHD H + G
Sbjct: 330 LGGFDLCDGRYDTEEHSLFRTLGTEA---DFYQTSVAGAKLSRGGPREPWHDCHVSVVGG 386
Query: 359 AAWDVLTNFEQRWTKQCDPSLLVPISSIPNLGHKSNIIPSSNYFNQRNWKVQVFRSIDHV 418
AAWDVL NFEQRWTKQC+PS+LV S I NL + + P+ N R W VQV RSIDH+
Sbjct: 387 AAWDVLKNFEQRWTKQCNPSVLVNTSGIRNLVNLTG--PTEE--NNRKWNVQVLRSIDHI 442
Query: 419 SASQLAKNLTVERSIHEAYVEAIRKAERFIYIENQYFIGGCQLWE--KDKHC-GCRNLIP 475
SA+++ + L VE+S+H+ YV AIRKAERFIYIENQYF+G C WE DK C GC NLIP
Sbjct: 443 SATEMPRGLPVEKSVHDGYVAAIRKAERFIYIENQYFMGSCDHWESKNDKICSGCTNLIP 502
Query: 476 IEIALKVVSKIKAKERFAVYILIPMWPEGVPTSDPVQDILHWTRETMAMMYKLIGEAIQE 535
+EIALK+ +KI+A+ERFAVYI+IPMWPEG P S+ V++ILHWTRETM+MMY++IGEAI E
Sbjct: 503 VEIALKIAAKIRARERFAVYIVIPMWPEGPPESETVEEILHWTRETMSMMYQIIGEAIWE 562
Query: 536 SGQVGHPRDFLNFFCLATREEKKSNGEFVPPYSPHPMTQYWNAQMHRRFMVYVHSKLMIV 595
G HPRD+LNFFCLA REEK+ +GEF SPH T YWNAQ +RRFMVYVHSKLMIV
Sbjct: 563 VGDKSHPRDYLNFFCLANREEKR-DGEFEAVSSPHQKTHYWNAQRNRRFMVYVHSKLMIV 621
Query: 596 DDVYLLIGSANINQRSMDGQRDTEIAIGCYQLPKNDDQNSEDISAYRLSLWYEHTG---L 652
DD Y+LIGSANINQRSMDG RDTEIAIGCYQ N N+ +I AYRLSLWYEHTG
Sbjct: 622 DDTYILIGSANINQRSMDGCRDTEIAIGCYQTNTN---NTNEIQAYRLSLWYEHTGGKIT 678
Query: 653 AEGL-FREPESLECVQKICSIGDEMWNIYSGEEVVDMDGVHLVTYPVNVTPDGLIEDLVD 711
A+ L EPESLECV+ + +IG++MW IYSG++VVDM G+HLV YP++VT DG +E++ D
Sbjct: 679 ADDLSSSEPESLECVRGLRTIGEQMWEIYSGDKVVDMLGIHLVAYPISVTGDGAVEEVGD 738
Query: 712 EGGNFPDTKTPVKGKRSKVLPPICTT 737
G FPDTKT VKGKRSK+ PP+ TT
Sbjct: 739 --GCFPDTKTLVKGKRSKMFPPVLTT 762
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Hydrolyzes glycerol-phospholipids at the terminal phosphodiesteric bond. Arabidopsis thaliana (taxid: 3702) EC: 3EC: .EC: 1EC: .EC: 4EC: .EC: 4 |
| >sp|Q43270|PLDA1_MAIZE Phospholipase D alpha 1 OS=Zea mays GN=PLD1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 597 bits (1539), Expect = e-169, Method: Compositional matrix adjust.
Identities = 332/770 (43%), Positives = 460/770 (59%), Gaps = 58/770 (7%)
Query: 14 YVTIKIDNKKVAKT---SHEH-DRVWNQTFQILCAH-PADATITITLKTK--CSVLGKIH 66
Y T+ ++ +V +T S+E + W ++F I CAH AD T+ + S++G+ +
Sbjct: 55 YATVDLEKARVGRTRMISNEPVNPRWYESFHIYCAHMAADVIFTVKIDNSIGASLIGRAY 114
Query: 67 IQALQILNEASLISGFFPLEMENGKPNPDLRLRFMLWFKPAAYEPTWGKIISNGEFQGLR 126
+ A+Q L I + + EN +P D ++ L + + W + + + ++ G+
Sbjct: 115 L-AVQDLLGGEEIDKWLEISDENREPVGDSKIHVKLQYFDVGKDRNWARGVRSTKYPGVP 173
Query: 127 NASFPQRSNCHVKLYHDAHHSSSFEPPYDLCGS----PGKLWEDVYKAIEGAKHLIYIAG 182
F QR C V LY DAH +F P L P + WED++ AI A+HLIYI G
Sbjct: 174 YTFFSQRQGCKVTLYQDAHVPDNFVPRIQLADGKNYEPHRCWEDIFDAISKAQHLIYITG 233
Query: 183 WSLNPKMVLVRDSQTEIAHARGVQLGELLKHKAEEGVAVRIMLWDDETSLPIIKNKGVMR 242
WS+ ++ LVRD+ V LGELLK KA EGV V +++WDD TS+ ++K G+M
Sbjct: 234 WSVYTEITLVRDTNRPKPGG-DVTLGELLKRKASEGVRVLMLVWDDRTSVGLLKKDGLMA 292
Query: 243 THDEDAFAYFKHTKVICKLCPR---------LHHKFPTLFAHHQKTITVDARAQD-SIFD 292
THDE+ YF T V C LCPR + T+F HHQK + VD +
Sbjct: 293 THDEETANYFHGTDVNCVLCPRNPDDSGSFVQDLQISTMFTHHQKIVVVDHEMPNQGSQQ 352
Query: 293 REIMSFVGGLDLCDGRYDTEKHSLFQTLNSESHCFDFYQINIAGASLHKGGPREPWHDVH 352
R I+SF+GG+DLCDGRYDT+ HSLF+TL++ H DF+Q N G S+ KGGPREPWHD+H
Sbjct: 353 RRIVSFIGGIDLCDGRYDTQYHSLFRTLDTVHHD-DFHQPNFEGGSIKKGGPREPWHDIH 411
Query: 353 ACITGEAAWDVLTNFEQRWTKQCDPSLLVPISSIPNLGHKSNIIPSSNYF---NQRNWKV 409
+ + G AWDVL NFEQRW KQ LLV + +P++ IIP S ++ W V
Sbjct: 412 SRLEGPIAWDVLYNFEQRWRKQGGKDLLVRLRDLPDI-----IIPPSPVMFPEDRETWNV 466
Query: 410 QVFRSIDHVSASQL--------------AKNLTVERSIHEAYVEAIRKAERFIYIENQYF 455
Q+FRSID +A K+ ++RSI +AYV AIR+A+ FIYIENQYF
Sbjct: 467 QLFRSIDGGAAFGFPETPEEAARAGLVSGKDQIIDRSIQDAYVNAIRRAKNFIYIENQYF 526
Query: 456 IGGCQLWE----KDKHCGCRNLIPIEIALKVVSKIKAKERFAVYILIPMWPEGVPTSDPV 511
+G W+ K + G +LIP E++LK+VSKI+A ERF VY+++PMWPEGVP S V
Sbjct: 527 LGSSYGWKPEGIKPEEIGALHLIPKELSLKIVSKIEAGERFTVYVVVPMWPEGVPESASV 586
Query: 512 QDILHWTRETMAMMYKLIGEAIQESGQVGHPRDFLNFFCLATREEKKSNGEFVPPYSPHP 571
Q IL W R TM MMY I +A++ +G +P+D+L FFCL RE K+ +
Sbjct: 587 QAILDWQRRTMEMMYTDIAQALEANGIEANPKDYLTFFCLGNREVKQEGEYEPEEHPEPD 646
Query: 572 MTQYWNAQMHRRFMVYVHSKLMIVDDVYLLIGSANINQRSMDGQRDTEIAIGCYQ---LP 628
T Y AQ RRFM+YVH+K+MIVDD Y++IGSANINQRSMDG RD+EIA+G YQ L
Sbjct: 647 -TDYIRAQEARRFMIYVHTKMMIVDDEYIIIGSANINQRSMDGARDSEIAMGAYQPYHLA 705
Query: 629 KNDDQNSEDISAYRLSLWYEHTGLAEGLFREPESLECVQKICSIGDEMWNIYSGEEV-VD 687
+ I +R+SLWYEH G+ E +F+ PES+ECVQK+ + ++ W++YS +++ D
Sbjct: 706 TRQPARGQ-IHGFRMSLWYEHLGMLEDVFQRPESVECVQKVNEVAEKYWDLYSSDDLEQD 764
Query: 688 MDGVHLVTYPVNVTPDGLIEDLVDEGGNFPDTKTPVKGKRSKVLPPICTT 737
+ G HL++YP+ VT DG + +L NFPDT+ V G +S LPPI TT
Sbjct: 765 LPG-HLLSYPIGVTADGSVTELPGM-ENFPDTRARVLGNKSDYLPPILTT 812
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Hydrolyzes glycerol-phospholipids at the terminal phosphodiesteric bond. Plays an important role in various cellular processes. Zea mays (taxid: 4577) EC: 3 EC: . EC: 1 EC: . EC: 4 EC: . EC: 4 |
| >sp|Q43007|PLDA1_ORYSJ Phospholipase D alpha 1 OS=Oryza sativa subsp. japonica GN=PLD1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 596 bits (1536), Expect = e-169, Method: Compositional matrix adjust.
Identities = 332/771 (43%), Positives = 457/771 (59%), Gaps = 58/771 (7%)
Query: 13 TYVTIKIDNKKVAKT----SHEHDRVWNQTFQILCAHPADA---TITITLKTKCSVLGKI 65
Y TI ++ +V +T + + W ++F I CAH A T+ I + +G+
Sbjct: 54 VYSTIDLEKARVGRTRMITNEPINPRWYESFHIYCAHMASNVIFTVKIDNPIGATNIGRA 113
Query: 66 HIQALQILNEASLISGFFPLEMENGKPNPDLRLRFMLWFKPAAYEPTWGKIISNGEFQGL 125
++ ++LN I + + N +P + ++ L + + + W + + + ++ G+
Sbjct: 114 YLPVQELLN-GEEIDRWLDICDNNREPVGESKIHVKLQYFDVSKDRNWARGVRSTKYPGV 172
Query: 126 RNASFPQRSNCHVKLYHDAHHSSSFEPPYDLCGS----PGKLWEDVYKAIEGAKHLIYIA 181
F QR C V LY DAH +F P L P + WED++ AI A+HLIYI
Sbjct: 173 PYTFFSQRQGCKVTLYQDAHVPDNFIPKIPLADGKNYEPHRCWEDIFDAISNAQHLIYIT 232
Query: 182 GWSLNPKMVLVRDSQTEIAHARGVQLGELLKHKAEEGVAVRIMLWDDETSLPIIKNKGVM 241
GWS+ ++ LVRDS V LGELLK KA EGV V +++WDD TS+ ++K G+M
Sbjct: 233 GWSVYTEITLVRDSNRPKPGG-DVTLGELLKKKASEGVRVLMLVWDDRTSVGLLKRDGLM 291
Query: 242 RTHDEDAFAYFKHTKVICKLCPR---------LHHKFPTLFAHHQKTITVDAR-AQDSIF 291
THDE+ YF + V C LCPR T+F HHQK + VD
Sbjct: 292 ATHDEETENYFHGSDVNCVLCPRNPDDSGSIVQDLSISTMFTHHQKIVVVDHELPNQGSQ 351
Query: 292 DREIMSFVGGLDLCDGRYDTEKHSLFQTLNSESHCFDFYQINIAGASLHKGGPREPWHDV 351
R I+SFVGGLDLCDGRYDT+ HSLF+TL+S +H DF+Q N A AS+ KGGPREPWHD+
Sbjct: 352 QRRIVSFVGGLDLCDGRYDTQYHSLFRTLDS-THHDDFHQPNFATASIKKGGPREPWHDI 410
Query: 352 HACITGEAAWDVLTNFEQRWTKQCDPSLLVPISSIPNLGHKSNIIPSSNYF---NQRNWK 408
H+ + G AWDVL NFEQRW KQ LL+ + + + IIP S ++ W
Sbjct: 411 HSRLEGPIAWDVLYNFEQRWRKQGGKDLLLQLRDLSD-----TIIPPSPVMFPEDRETWN 465
Query: 409 VQVFRSIDHVSASQL--------------AKNLTVERSIHEAYVEAIRKAERFIYIENQY 454
VQ+FRSID +A K+ ++RSI +AY+ AIR+A+ FIYIENQY
Sbjct: 466 VQLFRSIDGGAAFGFPDTPEEAAKAGLVSGKDQIIDRSIQDAYIHAIRRAKNFIYIENQY 525
Query: 455 FIGGCQLWE----KDKHCGCRNLIPIEIALKVVSKIKAKERFAVYILIPMWPEGVPTSDP 510
F+G W+ K + G +LIP E+ALKVVSKI+A ERF VY+++PMWPEGVP S
Sbjct: 526 FLGSSYAWKPEGIKPEDIGALHLIPKELALKVVSKIEAGERFTVYVVVPMWPEGVPESGS 585
Query: 511 VQDILHWTRETMAMMYKLIGEAIQESGQVGHPRDFLNFFCLATREEKKSNGEFVPPYSPH 570
VQ IL W R TM MMY I EA+Q G +P+D+L FFCL RE K++ GE+ P P
Sbjct: 586 VQAILDWQRRTMEMMYTDITEALQAKGIEANPKDYLTFFCLGNREVKQA-GEYQPEEQPE 644
Query: 571 PMTQYWNAQMHRRFMVYVHSKLMIVDDVYLLIGSANINQRSMDGQRDTEIAIGCYQ---L 627
T Y AQ RRFM+YVH+K+MIVDD Y++IGSANINQRSMDG RD+EIA+G YQ L
Sbjct: 645 ADTDYSRAQEARRFMIYVHTKMMIVDDEYIIIGSANINQRSMDGARDSEIAMGGYQPYHL 704
Query: 628 PKNDDQNSEDISAYRLSLWYEHTGLAEGLFREPESLECVQKICSIGDEMWNIYSGEEV-V 686
+ I +R++LWYEH G+ + +F+ PESLECVQK+ I ++ W++YS +++
Sbjct: 705 ATRQPARGQ-IHGFRMALWYEHLGMLDDVFQRPESLECVQKVNRIAEKYWDMYSSDDLQQ 763
Query: 687 DMDGVHLVTYPVNVTPDGLIEDLVDEGGNFPDTKTPVKGKRSKVLPPICTT 737
D+ G HL++YP+ V DG++ +L FPDT+ V G +S +PPI T+
Sbjct: 764 DLPG-HLLSYPIGVASDGVVTELPGM-EYFPDTRARVLGAKSDYMPPILTS 812
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Hydrolyzes glycerol-phospholipids at the terminal phosphodiesteric bond. Plays an important role in various cellular processes. Oryza sativa subsp. japonica (taxid: 39947) EC: 3 EC: . EC: 1 EC: . EC: 4 EC: . EC: 4 |
| >sp|Q70EW5|PLDA1_CYNCA Phospholipase D alpha 1 OS=Cynara cardunculus GN=PLD1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 591 bits (1524), Expect = e-168, Method: Compositional matrix adjust.
Identities = 333/778 (42%), Positives = 460/778 (59%), Gaps = 58/778 (7%)
Query: 7 FVNGKPT-YVTIKIDNKKVAKT----SHEHDRVWNQTFQILCAHPADATITITLKTK--- 58
F G P Y TI ++ +V +T + + W ++F I CAH A + I T+K
Sbjct: 42 FGEGTPKIYATIDLEKSRVGRTRMIENEPQNPRWYESFHIYCAHHA-SNIIFTVKDDNPI 100
Query: 59 -CSVLGKIHIQALQILNEASLISGFFPLEMENGKPNP-DLRLRFMLWFKPAAYEPTWGKI 116
++LG+ ++ ++L + + + + E+ P P ++ L + + W +
Sbjct: 101 GATLLGRAYMPVRELL-DGDEVDKWIEIMDEDNNPTPAGSKIHVKLQYFDVTQDRNWDRG 159
Query: 117 ISNGEFQGLRNASFPQRSNCHVKLYHDAHHSSSFEPPYDLCGS----PGKLWEDVYKAIE 172
I G++ G+ F QR C V LY DAH +F P L G P + WED++ AI
Sbjct: 160 IKTGKYPGVPYTFFAQRQGCRVSLYQDAHVPDNFIPKISLAGGKYYEPHRCWEDIFDAIS 219
Query: 173 GAKHLIYIAGWSLNPKMVLVRDSQTEIAHARGVQLGELLKHKAEEGVAVRIMLWDDETSL 232
AKH IYI GWS+ ++ L+RD + V LG+LLK KA+EGV V +++WDD TS+
Sbjct: 220 DAKHFIYITGWSVYTQIPLIRDPNRQ-KPGGDVLLGQLLKKKADEGVRVAMLVWDDRTSV 278
Query: 233 PIIKNKGVMRTHDEDAFAYFKHTKVICKLCPR---------LHHKFPTLFAHHQKTITVD 283
+ K G+M THDE+ +FK T V C LCPR K T+F HHQK + VD
Sbjct: 279 NVFKEDGLMATHDEETENFFKDTDVHCILCPRDPDDGGSIIQDLKVSTMFTHHQKIVVVD 338
Query: 284 AR-AQDSIFDREIMSFVGGLDLCDGRYDTEKHSLFQTLNSESHCFDFYQINIAGASLHKG 342
+ R +MSFVGG+DLCDGRYD+ H LF TL+S +H DF+Q N AGAS+ KG
Sbjct: 339 HELPRGGSQKRRVMSFVGGIDLCDGRYDSAFHPLFSTLDS-AHHDDFHQPNYAGASIAKG 397
Query: 343 GPREPWHDVHACITGEAAWDVLTNFEQRWTKQCDPSLLVPISSIPNLGHKSNIIPSSNYF 402
GPREPWHD+H+ + G AWDVL NFEQRW KQ ++LV + + ++ I PS F
Sbjct: 398 GPREPWHDIHSRVEGPIAWDVLFNFEQRWRKQGGKNVLVDLKQLDDI----LIPPSPVTF 453
Query: 403 --NQRNWKVQVFRSID------------HVSASQL--AKNLTVERSIHEAYVEAIRKAER 446
+Q W VQ+FRSID S S L K+ ++RSI +AY+ AIR+A+
Sbjct: 454 PNDQETWNVQLFRSIDGGAAFGFPDTPEEASKSGLVSGKDNIIDRSIQDAYINAIRRAKH 513
Query: 447 FIYIENQYFIGGCQLWEKDK----HCGCRNLIPIEIALKVVSKIKAKERFAVYILIPMWP 502
FIYIENQYF+G W+ D G +LIP E++LK+V+KI+ E+F VYI++PMWP
Sbjct: 514 FIYIENQYFLGSSFAWKSDDIDVDEVGALHLIPKELSLKIVTKIQEGEKFIVYIVVPMWP 573
Query: 503 EGVPTSDPVQDILHWTRETMAMMYKLIGEAIQESGQVGHPRDFLNFFCLATREEKKSNGE 562
EG+P + VQ IL W R TM MMYK I +A+Q+ G PR++L FFCL RE KKS GE
Sbjct: 574 EGIPENGSVQAILDWQRRTMEMMYKDIVDALQDKGLDDDPREYLTFFCLGNREAKKS-GE 632
Query: 563 FVPPYSPHPMTQYWNAQMHRRFMVYVHSKLMIVDDVYLLIGSANINQRSMDGQRDTEIAI 622
+ P +P P + Y +AQ +RRFM+YVHSK+MIVDD Y+++GSANINQRSMDG RD+EIA+
Sbjct: 633 YEPTEAPEPDSGYLHAQENRRFMIYVHSKMMIVDDEYIIVGSANINQRSMDGARDSEIAM 692
Query: 623 GCYQLPKNDDQNSED--ISAYRLSLWYEHTGLAEGLFREPESLECVQKICSIGDEMWNIY 680
G YQ Q + +R++LWYEH G+ + F PE+ +CV K + D+ W++Y
Sbjct: 693 GAYQPYHLATQTPARGHVHGFRMALWYEHLGMLDDSFERPENKDCVNKANEMADKCWDLY 752
Query: 681 SGEEV-VDMDGVHLVTYPVNVTPDGLIEDLVDEGGNFPDTKTPVKGKRSKVLPPICTT 737
+ E++ D+ G HL+ YPV VT G I +L FPDT + G +S LPPI TT
Sbjct: 753 ASEDLDRDLPG-HLLRYPVGVTRKGDITELPGT-ECFPDTSARILGAKSDYLPPILTT 808
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Hydrolyzes glycerol-phospholipids at the terminal phosphodiesteric bond. Plays an important role in various cellular processes. Cynara cardunculus (taxid: 4265) EC: 3 EC: . EC: 1 EC: . EC: 4 EC: . EC: 4 |
| >sp|Q41142|PLDA1_RICCO Phospholipase D alpha 1 OS=Ricinus communis GN=PLD1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 590 bits (1520), Expect = e-167, Method: Compositional matrix adjust.
Identities = 330/771 (42%), Positives = 458/771 (59%), Gaps = 59/771 (7%)
Query: 14 YVTIKIDNKKVAKT----SHEHDRVWNQTFQILCAHPADATITITLKTK----CSVLGKI 65
Y TI ++ +V +T + + + W ++F + CAH A + + T+K +++G+
Sbjct: 50 YATIDLEKARVGRTRILENEQSNPRWYESFHVYCAHQA-SNVIFTVKDDNPIGATLIGRA 108
Query: 66 HIQALQILNEASLISGFFPLEMENGKPNPDLRLRFMLWFKPAAYEPTWGKIISNGEFQGL 125
++ ++L+ + L+ + + ++ L + + WG+ I + ++ G+
Sbjct: 109 YVPVEELLDGEEIDRWVEILDEDKNPVHSGSKIHVKLQYFEVTKDRNWGQGIRSSKYPGV 168
Query: 126 RNASFPQRSNCHVKLYHDAHHSSSFEPPYDLCGS----PGKLWEDVYKAIEGAKHLIYIA 181
F QR C V LY DAH F P L G P + WEDV+ AI AKHLIYI
Sbjct: 169 PYTYFSQRQGCKVSLYQDAHIPDKFVPQIPLAGGNYYEPHRCWEDVFDAITNAKHLIYIT 228
Query: 182 GWSLNPKMVLVRDSQTEIAHARGVQLGELLKHKAEEGVAVRIMLWDDETSLPIIKNKGVM 241
GWS+ ++ L+RDS+ + LGELLK KA EGV V +++WDD TS+ ++K G+M
Sbjct: 229 GWSVYTEISLIRDSRRP-KPGGDITLGELLKKKASEGVRVLMLVWDDRTSVGLLKKDGLM 287
Query: 242 RTHDEDAFAYFKHTKVICKLCPR---------LHHKFPTLFAHHQKTITVD-ARAQDSIF 291
THDE+ +F++T V C LCPR + T+F HHQK + VD A
Sbjct: 288 ATHDEETEHFFQNTDVHCVLCPRNPDDGGSFVQDLQISTMFTHHQKIVVVDSAMPNGDSQ 347
Query: 292 DREIMSFVGGLDLCDGRYDTEKHSLFQTLNSESHCFDFYQINIAGASLHKGGPREPWHDV 351
R I+SFVGGLDLCDGRYD+ HSLF+TL+S +H DF+Q N AGAS+ KGGPREPWHD+
Sbjct: 348 RRRIVSFVGGLDLCDGRYDSPFHSLFRTLDS-AHHDDFHQPNFAGASIEKGGPREPWHDI 406
Query: 352 HACITGEAAWDVLTNFEQRWTKQCDPSLLVPISSIPNLGHKSNIIPSSNYF---NQRNWK 408
H+ + G AWDVL NFEQRW KQ LL+ + + ++ IIP S + W
Sbjct: 407 HSRLEGPIAWDVLFNFEQRWRKQGGKDLLIQLRELEDV-----IIPPSPVMYPDDFEAWN 461
Query: 409 VQVFRSIDHVSASQL--------------AKNLTVERSIHEAYVEAIRKAERFIYIENQY 454
VQ+FRSID +A K+ ++RSI +AY+ AIR+A+ FIYIENQY
Sbjct: 462 VQLFRSIDGGAAFGFPETPEDAPEAGLVSGKDNIIDRSIQDAYIHAIRRAKNFIYIENQY 521
Query: 455 FIGGCQLWEKD----KHCGCRNLIPIEIALKVVSKIKAKERFAVYILIPMWPEGVPTSDP 510
F+G W D + +LIP E++LK++SKI A ERF VYI++PMWPEG+P S
Sbjct: 522 FLGSSFGWSPDGIKPEDINALHLIPKELSLKILSKIAAGERFTVYIVVPMWPEGIPESAS 581
Query: 511 VQDILHWTRETMAMMYKLIGEAIQESGQVGHPRDFLNFFCLATREEKKSNGEFVPPYSPH 570
VQ IL W + TM MMYK I +A++ +G + PR++L FFCL RE KKS GE+ P P
Sbjct: 582 VQAILDWQKRTMEMMYKDIVQALKANGIIEDPRNYLTFFCLGNREVKKS-GEYEPAEKPE 640
Query: 571 PMTQYWNAQMHRRFMVYVHSKLMIVDDVYLLIGSANINQRSMDGQRDTEIAIGCYQ---L 627
P T Y AQ RRFM+YVH+K+MIVDD Y++IGSANINQRSMDG RD+EIA+G YQ L
Sbjct: 641 PDTDYIRAQEARRFMIYVHTKMMIVDDEYIIIGSANINQRSMDGARDSEIAMGAYQPHHL 700
Query: 628 PKNDDQNSEDISAYRLSLWYEHTGLAEGLFREPESLECVQKICSIGDEMWNIYSGEEVV- 686
+ I +R+SLWYEH G+ + F PES ECV+K+ + ++ W++YS E +
Sbjct: 701 STRQPARGQ-IHGFRMSLWYEHLGMLDESFLNPESEECVRKVNQMAEKYWDLYSSETLEH 759
Query: 687 DMDGVHLVTYPVNVTPDGLIEDLVDEGGNFPDTKTPVKGKRSKVLPPICTT 737
D+ G HL+ YP+ V +G + +L FPDTK V G +S LPPI TT
Sbjct: 760 DLPG-HLLRYPIGVASEGDVTELPGT-EFFPDTKARVLGAKSDYLPPILTT 808
|
Hydrolyzes glycerol-phospholipids at the terminal phosphodiesteric bond. Plays an important role in various cellular processes, including phytohormone action, vesicular trafficking, secretion, cytoskeletal arrangement, meiosis, tumor promotion, pathogenesis, membrane deterioration and senescence. Ricinus communis (taxid: 3988) EC: 3 EC: . EC: 1 EC: . EC: 4 EC: . EC: 4 |
| >sp|P93400|PLDA1_TOBAC Phospholipase D alpha 1 OS=Nicotiana tabacum GN=PLD1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 588 bits (1516), Expect = e-167, Method: Compositional matrix adjust.
Identities = 326/779 (41%), Positives = 460/779 (59%), Gaps = 60/779 (7%)
Query: 7 FVNGKPT-YVTIKIDNKKVAKT----SHEHDRVWNQTFQILCAHPADATITITLKTK--- 58
F G P Y T+ ++ +V +T + ++ W ++F I CAH A + + T+K
Sbjct: 42 FGKGTPAIYATVDLEKARVGRTRKIKNEPNNPRWYESFHIYCAHMA-SNVIFTVKDDNPI 100
Query: 59 -CSVLGKIHIQALQILNEASLISGFFPLEMENGKPNPDLRLRFMLWFKPAAYEPTWGKII 117
+++G+ ++ ++L + L+ E ++ L F + +P W + I
Sbjct: 101 GATLIGRAYVPVEELLEGEEIDKWVEILDREMNPIAEGSKIHVKLQFFDVSRDPNWERGI 160
Query: 118 SNGEFQGLRNASFPQRSNCHVKLYHDAHHSSSFEPPYDLCGS----PGKLWEDVYKAIEG 173
+ ++ G+ F QR+ C V LY DAH +F P L G P + WED++ AI
Sbjct: 161 RSSKYPGVPYTFFAQRTGCRVSLYQDAHVPDNFIPKIPLSGGKYYEPHRCWEDIFDAIIN 220
Query: 174 AKHLIYIAGWSLNPKMVLVRDSQTEIAHARGVQLGELLKHKAEEGVAVRIMLWDDETSLP 233
AKHLIYI GWS+ ++ LVRDS+ + + LGELLK KA EGV V +++WDD TS+
Sbjct: 221 AKHLIYITGWSVYTEITLVRDSRRQ-KPGGDITLGELLKKKASEGVKVLMLVWDDRTSVG 279
Query: 234 IIKNKGVMRTHDEDAFAYFKHTKVICKLCPR---------LHHKFPTLFAHHQKTITVDA 284
++K G+M THD++ +F+ T+V C LCPR + T+F HHQK + VD+
Sbjct: 280 LLKKDGLMATHDQETEQFFQGTEVNCVLCPRNPDDGGSIVQSLQIGTMFTHHQKIVVVDS 339
Query: 285 RAQDSIFD-REIMSFVGGLDLCDGRYDTEKHSLFQTLNSESHCFDFYQINIAGASLHKGG 343
+ R I+SFVGG+DLCDGRYDT HSLF+TL++ +H DF+Q N ++ KGG
Sbjct: 340 ELPSGESEKRRILSFVGGIDLCDGRYDTPFHSLFRTLDT-AHHDDFHQPNFPDGAITKGG 398
Query: 344 PREPWHDVHACITGEAAWDVLTNFEQRWTKQCDPSLLVPISSIPNLGHKSNIIPSSNYF- 402
PREPWHD+H+ + G AWDVL NFEQRW KQ +LV + ++ IIP S
Sbjct: 399 PREPWHDIHSRLEGPIAWDVLFNFEQRWRKQGGKDVLVNFRELDDI-----IIPPSPVMH 453
Query: 403 --NQRNWKVQVFRSIDHVSASQL--------------AKNLTVERSIHEAYVEAIRKAER 446
+ W VQ+FRSID +A + ++RSI +AY+ AIR+A+
Sbjct: 454 LDDSETWNVQLFRSIDEGAAFGFPETPEDAAKAGLVSGXDNIIDRSIQDAYIHAIRRAKN 513
Query: 447 FIYIENQYFIGGCQLWEKD----KHCGCRNLIPIEIALKVVSKIKAKERFAVYILIPMWP 502
FIYIENQYF+G W+ D + G ++IP E+ALK+VSKI+A ERF VY+++PMWP
Sbjct: 514 FIYIENQYFLGSSYDWQSDDIKVEDIGALHVIPKELALKIVSKIEAGERFTVYVVVPMWP 573
Query: 503 EGVPTSDPVQDILHWTRETMAMMYKLIGEAIQESGQVGHPRDFLNFFCLATREEKKSNGE 562
EG+P S VQ IL W R TM MMYK I +A+ G PR++L FFC+ RE KKS G
Sbjct: 574 EGIPESASVQAILDWQRRTMEMMYKHIVQALNAKGIEEDPRNYLTFFCIGNREVKKS-GA 632
Query: 563 FVPPYSPHPMTQYWNAQMHRRFMVYVHSKLMIVDDVYLLIGSANINQRSMDGQRDTEIAI 622
+ P +P P + Y AQ RRFM+YVHSK+MIVDD Y+++GSANINQRSMDG RD+EIA+
Sbjct: 633 YEPSETPEPDSDYIRAQEARRFMIYVHSKMMIVDDEYIIVGSANINQRSMDGARDSEIAM 692
Query: 623 GCYQ---LPKNDDQNSEDISAYRLSLWYEHTGLAEGLFREPESLECVQKICSIGDEMWNI 679
G YQ L + + I +R++LWYEH G+ + F PES ECV K+ + D+ W++
Sbjct: 693 GAYQPHHLATREPARGQ-IHGFRMALWYEHLGMLDETFLHPESEECVSKVNRMADKYWDL 751
Query: 680 YSGEEV-VDMDGVHLVTYPVNVTPDGLIEDLVDEGGNFPDTKTPVKGKRSKVLPPICTT 737
YS E + D+ G HL+ YP+ V +G + +L +FPDTK V G +S LPPI TT
Sbjct: 752 YSSESLERDLPG-HLLRYPIGVASEGDVTELPG-AEHFPDTKARVLGTKSDYLPPILTT 808
|
Hydrolyzes glycerol-phospholipids at the terminal phosphodiesteric bond. Plays an important role in various cellular processes. Nicotiana tabacum (taxid: 4097) EC: 3 EC: . EC: 1 EC: . EC: 4 EC: . EC: 4 |
| >sp|O04865|PLDA1_VIGUN Phospholipase D alpha 1 OS=Vigna unguiculata GN=PLD1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 587 bits (1514), Expect = e-167, Method: Compositional matrix adjust.
Identities = 328/774 (42%), Positives = 456/774 (58%), Gaps = 64/774 (8%)
Query: 14 YVTIKIDNKKVAKT----SHEHDRVWNQTFQILCAHPADATITITLKTK----CSVLGKI 65
Y TI ++ +V +T + + WN++F I C H A + I T+K +++G+
Sbjct: 50 YATIDLEKARVGRTRIIENETTNPKWNESFHIYCGHLA-SNIIFTVKDDNPIGATLIGRA 108
Query: 66 HIQALQILNEASLISGFFPLEMENGKPNPDLRLRFMLWFKPAAYEPTWGKIISNGEFQGL 125
++ ++L+ + L+ E ++ L + + W + I + ++ G+
Sbjct: 109 YVPVSEVLDGHEIDKWVEILDTEKNPIEGGSKIHVRLQYFDVLKDRNWARGIRSPKYPGV 168
Query: 126 RNASFPQRSNCHVKLYHDAHHSSSFEPPYDLCGSPG----KLWEDVYKAIEGAKHLIYIA 181
F QR C V LY DAH +F P L G + WED++ AI AKHLIYI
Sbjct: 169 PYTFFSQRQGCKVFLYQDAHVPDNFVPKIPLAGGKNYEAHRCWEDIFDAITNAKHLIYIT 228
Query: 182 GWSLNPKMVLVRDSQTEIAHARGVQ-LGELLKHKAEEGVAVRIMLWDDETSLPIIKNKGV 240
GWS+ ++ L+RDS+ A G Q +GELLK KA EGV V +++WDD TS+ ++K G+
Sbjct: 229 GWSVYTEISLIRDSRR--PKAGGDQTIGELLKKKASEGVRVLMLVWDDRTSVGLLKKDGL 286
Query: 241 MRTHDEDAFAYFKHTKVICKLCPR---------LHHKFPTLFAHHQKTITVDAR--AQDS 289
M THDE+ +F+ T V C LCPR + T+F HHQK + VD+
Sbjct: 287 MATHDEETEQFFRDTDVHCVLCPRNPDDGGSIVQDLQISTMFTHHQKIVVVDSALPGGGG 346
Query: 290 IFDREIMSFVGGLDLCDGRYDTEKHSLFQTLNSESHCFDFYQINIAGASLHKGGPREPWH 349
R I+SFVGGLDLCDGRYDT HSLF+TL++ +H DF+Q N GA++ KGGPREPWH
Sbjct: 347 SDKRRIVSFVGGLDLCDGRYDTAFHSLFRTLDT-AHHDDFHQPNFPGAAITKGGPREPWH 405
Query: 350 DVHACITGEAAWDVLTNFEQRWTKQCDPSLLVPISSIPNLGHKSNIIPSSNYF---NQRN 406
D+H+ + G AWDVL NFEQRW KQ +L P+ + ++ IIP S +
Sbjct: 406 DIHSRVEGPIAWDVLFNFEQRWRKQGGKDILAPLRELEDV-----IIPPSPVTFPDDHET 460
Query: 407 WKVQVFRSIDHVSASQL--------------AKNLTVERSIHEAYVEAIRKAERFIYIEN 452
W VQ+FRSID +A K+ ++RSI +AY+ AIR+A+ FIYIEN
Sbjct: 461 WNVQLFRSIDGGAAFGFPDTPEDAAKAGLVSGKDNIIDRSIQDAYIHAIRRAKNFIYIEN 520
Query: 453 QYFIGGCQLWEKD----KHCGCRNLIPIEIALKVVSKIKAKERFAVYILIPMWPEGVPTS 508
QYF+G W D + G +LIP E++LK+VSKI+A ERFAVY+++PMWPEG+P S
Sbjct: 521 QYFLGSSFSWNNDDIKREEIGALHLIPKELSLKIVSKIEAGERFAVYVVVPMWPEGIPES 580
Query: 509 DPVQDILHWTRETMAMMYKLIGEAIQESGQVGHPRDFLNFFCLATREEKKSNGEFVPPYS 568
VQ IL W + T+ MMYK + +A++ G PR++L FFCL RE KKS GE+ P
Sbjct: 581 SSVQAILDWQKRTIEMMYKDVVQALRAKGSDEDPRNYLTFFCLGNREVKKS-GEYEPAEQ 639
Query: 569 PHPMTQYWNAQMHRRFMVYVHSKLMIVDDVYLLIGSANINQRSMDGQRDTEIAIGCYQLP 628
P P + Y AQ RRFM+YVH+K+MIVDD Y++IGSANINQRSMDG RD+EIA+G YQ P
Sbjct: 640 PEPDSDYQRAQEARRFMIYVHTKMMIVDDEYIIIGSANINQRSMDGARDSEIAMGGYQ-P 698
Query: 629 ---KNDDQNSEDISAYRLSLWYEHTGLAEGLFREPESLECVQKICSIGDEMWNIYSGEEV 685
N + +R+SLWYEH G+ F+ PES EC+ K+ I D+ W++YS E +
Sbjct: 699 YHLANTQPARGQVYGFRMSLWYEHLGMLHDTFQRPESEECINKVNQIADKYWDLYSSESL 758
Query: 686 -VDMDGVHLVTYPVNVTPDGLIEDLVDEGGN-FPDTKTPVKGKRSKVLPPICTT 737
D+ G HL+ YP+ V +G + +L G FPDTK + G ++ LPPI TT
Sbjct: 759 ERDLPG-HLLRYPIGVASEGEVTEL--PGFEFFPDTKARILGAKADYLPPILTT 809
|
Hydrolyzes glycerol-phospholipids at the terminal phosphodiesteric bond. Plays an important role in various cellular processes. Vigna unguiculata (taxid: 3917) EC: 3 EC: . EC: 1 EC: . EC: 4 EC: . EC: 4 |
| >sp|Q9SSQ9|PLDA2_ARATH Phospholipase D alpha 2 OS=Arabidopsis thaliana GN=PLDALPHA2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 584 bits (1505), Expect = e-165, Method: Compositional matrix adjust.
Identities = 330/773 (42%), Positives = 455/773 (58%), Gaps = 62/773 (8%)
Query: 14 YVTIKIDNKKVAKT----SHEHDRVWNQTFQILCAHPADATITITLKTK----CSVLGKI 65
Y TI ++ +V +T + W ++F I C H A I T+K +++G+
Sbjct: 51 YATIDLEKARVGRTRKITKEPKNPKWFESFHIYCGHMAKHVI-FTVKDANPIGATLIGRG 109
Query: 66 HIQALQILNEASLISGFFPLEMENGKPNPDLRLRFMLWFKPAAYEPTWGKIISNGEFQGL 125
+I IL+ + L+ E ++ L + + W + I + +F G+
Sbjct: 110 YIPVEDILHGEEVDRWVDILDNEKNPIAGGSKIHVKLQYFGVEKDKNWNRGIKSAKFPGV 169
Query: 126 RNASFPQRSNCHVKLYHDAHHSSSFEPPYDLCGS----PGKLWEDVYKAIEGAKHLIYIA 181
F QR C V LY DAH +F P L G P + WED++ AI AKHLIYI
Sbjct: 170 PYTFFSQRRGCKVSLYQDAHIPGNFVPKIPLAGGKNYEPHRCWEDIFDAITNAKHLIYIT 229
Query: 182 GWSLNPKMVLVRDSQTEIAHARGVQLGELLKHKAEEGVAVRIMLWDDETSLPIIKNKGVM 241
GWS+ ++ LVRDS+ V +GELLK KA EGV V +++WDD TS+ ++K G+M
Sbjct: 230 GWSVYTEISLVRDSRRP-KQGGDVTVGELLKKKASEGVKVILLVWDDRTSVDLLKKDGLM 288
Query: 242 RTHDEDAFAYFKHTKVICKLCPR---------LHHKFPTLFAHHQKTITVDARA-QDSIF 291
THDE+ +F+ T V C LCPR + + T+F HHQK + VD+
Sbjct: 289 ATHDEETENFFRGTDVNCILCPRNPDDGGSIVQNLQISTMFTHHQKIVVVDSEMPSGGSR 348
Query: 292 DREIMSFVGGLDLCDGRYDTEKHSLFQTLNSESHCFDFYQINIAGASLHKGGPREPWHDV 351
R I+SFVGGLDLCDGRYDT HSLF+TL++ +H DF+Q N GA++ KGGPREPWHD+
Sbjct: 349 SRRIVSFVGGLDLCDGRYDTPFHSLFRTLDT-AHHDDFHQPNFTGAAITKGGPREPWHDI 407
Query: 352 HACITGEAAWDVLTNFEQRWTKQCDPSLLVPISSIPNLGHKSNIIPSSNYFNQRN---WK 408
H + G AWDVL NFEQRW++Q +LV + + ++ IIP S + W
Sbjct: 408 HCRLEGPIAWDVLYNFEQRWSRQGGKDILVKMRELGDI-----IIPPSPVLFSEDHDVWN 462
Query: 409 VQVFRSIDHVSASQL--------------AKNLTVERSIHEAYVEAIRKAERFIYIENQY 454
VQ+FRSID +A+ K+ ++RSI +AY+ AIR+A+ FIYIENQY
Sbjct: 463 VQLFRSIDGGAAAGFPDSPEAAAEAGLVSGKDNIIDRSIQDAYIHAIRRAKDFIYIENQY 522
Query: 455 FIGGCQLWEKD----KHCGCRNLIPIEIALKVVSKIKAKERFAVYILIPMWPEGVPTSDP 510
F+G W D + +LIP E++LK+VSKIKA E+F VY+++PMWPEG+P S
Sbjct: 523 FLGSSFAWSADGIKPEEINALHLIPKELSLKIVSKIKAGEKFKVYVVVPMWPEGIPESGS 582
Query: 511 VQDILHWTRETMAMMYKLIGEAIQESGQVGH-PRDFLNFFCLATREEKKSNGEFVPPYSP 569
VQ IL W + TM MMYK + +A++E+G G PRD+L FFCL RE KK +GE+ P P
Sbjct: 583 VQAILDWQKRTMEMMYKDVIKALRENGLEGEDPRDYLTFFCLGNREVKK-DGEYEPSEKP 641
Query: 570 HPMTQYWNAQMHRRFMVYVHSKLMIVDDVYLLIGSANINQRSMDGQRDTEIAIGCYQ--- 626
P T Y AQ RRFM+YVH+K+MIVDD Y++IGSANINQRSMDG RD+EIA+G YQ
Sbjct: 642 EPDTDYIRAQEARRFMIYVHTKMMIVDDEYIIIGSANINQRSMDGARDSEIAMGGYQPYH 701
Query: 627 LPKNDDQNSEDISAYRLSLWYEHTGLAEGLFREPESLECVQKICSIGDEMWNIYSGEEVV 686
L + I +R+SLWYEH G+ + F +P S EC+QK+ + D+ W++YS E +
Sbjct: 702 LSTRQPARGQ-IHGFRMSLWYEHLGMLDETFLDPSSQECIQKVNRVADKYWDLYSSESLE 760
Query: 687 -DMDGVHLVTYPVNVTPDGLIEDLVDEGGN-FPDTKTPVKGKRSKVLPPICTT 737
D+ G HL+ YP+ + +G I +L G FPDTK + G +S +PPI TT
Sbjct: 761 HDLPG-HLLRYPIGIASEGNITEL--PGCEFFPDTKARILGVKSDYMPPILTT 810
|
Hydrolyzes glycerol-phospholipids at the terminal phosphodiesteric bond. Plays an important role in various cellular processes, including phytohormone action and response to stress, characterized by acidification of the cell. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 1 EC: . EC: 4 EC: . EC: 4 |
| >sp|P86387|PLDA1_CARPA Phospholipase D alpha 1 OS=Carica papaya GN=PLD1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 583 bits (1502), Expect = e-165, Method: Compositional matrix adjust.
Identities = 326/771 (42%), Positives = 450/771 (58%), Gaps = 59/771 (7%)
Query: 14 YVTIKIDNKKVAKTSHEHDR----VWNQTFQILCAHPADATITITLKTK----CSVLGKI 65
Y TI ++ +V +T D W ++F I CAH A + + T+K +++G+
Sbjct: 50 YATIDLERARVGRTRIIKDEPNNPKWYESFHIYCAHMA-SNVVFTVKDDNPIGATLIGRA 108
Query: 66 HIQALQILNEASLISGFFPLEMENGKPNPDLRLRFMLWFKPAAYEPTWGKIISNGEFQGL 125
++ +++ + L+ + D ++ L F + W I + G+
Sbjct: 109 YVPVEELIRGDQVDRWVEILDEDKNPIEGDSKIHVKLQFFDVKKDSNWNMGIKGARYLGV 168
Query: 126 RNASFPQRSNCHVKLYHDAHHSSSFEPPYDLCGS----PGKLWEDVYKAIEGAKHLIYIA 181
+ QR C V LY DAH F P L G P + WEDV+ AI A+HLIYI
Sbjct: 169 PYTFYSQRRGCRVSLYQDAHVPDGFIPKIPLAGGKYYEPHRCWEDVFDAITNARHLIYIT 228
Query: 182 GWSLNPKMVLVRDSQTEIAHARGVQLGELLKHKAEEGVAVRIMLWDDETSLPIIKNKGVM 241
GWS+ ++ L+RDS+ V LGELLK KA EGV V +++WDD TS+ ++K G+M
Sbjct: 229 GWSVYTEITLIRDSRRP-KPGGDVTLGELLKQKASEGVKVLMLVWDDRTSVGLLKKDGLM 287
Query: 242 RTHDEDAFAYFKHTKVICKLCPR---------LHHKFPTLFAHHQKTITVDARAQDSIFD 292
THDE+ YF++T V C LCPR + T+F HHQK + VD
Sbjct: 288 ATHDEETANYFQNTDVHCVLCPRNPDDGGSFVQGLQISTMFTHHQKIVVVDGEMPSGESQ 347
Query: 293 -REIMSFVGGLDLCDGRYDTEKHSLFQTLNSESHCFDFYQINIAGASLHKGGPREPWHDV 351
R I+SFVGG+DLCDGRYDT HSLF+TL++ +H DF+Q N AG+S+ KGGPREPWHD+
Sbjct: 348 MRRIVSFVGGIDLCDGRYDTPFHSLFRTLDT-AHHDDFHQPNFAGSSITKGGPREPWHDI 406
Query: 352 HACITGEAAWDVLTNFEQRWTKQCDPSLLVPISSIPNLGHKSNIIPSSNYF---NQRNWK 408
H+ + G AWDVL NFEQRW +Q +LV + + N+ IIP S + W
Sbjct: 407 HSRLEGPVAWDVLFNFEQRWRQQGGKDVLVNLRELDNI-----IIPPSPVMFPDDHETWN 461
Query: 409 VQVFRSIDHVSASQL--------------AKNLTVERSIHEAYVEAIRKAERFIYIENQY 454
VQ+FRSID +A K+ ++RSI +AY+ AIR+A+ FIYIENQY
Sbjct: 462 VQLFRSIDGGAAFGFPETPEEAARAGLVSGKDNIIDRSIQDAYINAIRRAKNFIYIENQY 521
Query: 455 FIGGCQLWEKD----KHCGCRNLIPIEIALKVVSKIKAKERFAVYILIPMWPEGVPTSDP 510
F+G W D + +LIP E++LK+VSKI+ ERF VY+++PMWPEGVP S
Sbjct: 522 FLGSSFDWSSDDIKREDINALHLIPKELSLKIVSKIERGERFTVYVVVPMWPEGVPESAS 581
Query: 511 VQDILHWTRETMAMMYKLIGEAIQESGQVGHPRDFLNFFCLATREEKKSNGEFVPPYSPH 570
VQ IL W R TM MMYK I +A++ + PR++L FFCL RE KKS GE+ P P
Sbjct: 582 VQAILDWQRRTMEMMYKDIIQALRAKDREEDPRNYLTFFCLGNREVKKS-GEYEPSERPE 640
Query: 571 PMTQYWNAQMHRRFMVYVHSKLMIVDDVYLLIGSANINQRSMDGQRDTEIAIGCYQ---L 627
+ Y AQ RRFM+YVH+K+MIVDD Y+++GSANINQRSMDG RD+EIA+G YQ L
Sbjct: 641 DDSDYIRAQEARRFMIYVHTKMMIVDDEYIIVGSANINQRSMDGARDSEIAMGAYQPYHL 700
Query: 628 PKNDDQNSEDISAYRLSLWYEHTGLAEGLFREPESLECVQKICSIGDEMWNIYSGEEVV- 686
N + I +R++LWYEH G+ + F EPE++ECVQK+ + + W++Y+ E +
Sbjct: 701 TINQPARGQ-IHGFRMALWYEHLGMLDDTFLEPENIECVQKVNRVAGKYWDLYASELLEH 759
Query: 687 DMDGVHLVTYPVNVTPDGLIEDLVDEGGNFPDTKTPVKGKRSKVLPPICTT 737
D+ G HL+ YP+ V+ +G + +L FPDTK V G +S LPPI TT
Sbjct: 760 DLPG-HLLRYPIGVSSEGDVTELPGT-EFFPDTKARVLGAKSDYLPPILTT 808
|
Hydrolyzes glycerol-phospholipids at the terminal phosphodiesteric bond. Plays an important role in various cellular processes. Carica papaya (taxid: 3649) EC: 3 EC: . EC: 1 EC: . EC: 4 EC: . EC: 4 |
| >sp|Q38882|PLDA1_ARATH Phospholipase D alpha 1 OS=Arabidopsis thaliana GN=PLDALPHA1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 582 bits (1500), Expect = e-165, Method: Compositional matrix adjust.
Identities = 326/772 (42%), Positives = 455/772 (58%), Gaps = 60/772 (7%)
Query: 14 YVTIKIDNKKVAKT----SHEHDRVWNQTFQILCAHPADATITITLKTK----CSVLGKI 65
Y TI + +V +T + + W ++F I CAH A + I T+K +++G+
Sbjct: 51 YATIDLQKARVGRTRKIKNEPKNPKWYESFHIYCAHLA-SDIIFTVKDDNPIGATLIGRA 109
Query: 66 HIQALQILNEASLISGFFPLEMENGKPNPDLRLRFMLWFKPAAYEPTWGKIISNGEFQGL 125
+I Q++N + L+ + ++ L + + W I + +F G+
Sbjct: 110 YIPVDQVINGEEVDQWVEILDNDRNPIQGGSKIHVKLQYFHVEEDRNWNMGIKSAKFPGV 169
Query: 126 RNASFPQRSNCHVKLYHDAHHSSSFEPPYDLCGS----PGKLWEDVYKAIEGAKHLIYIA 181
F QR C V LY DAH +F P L G P + WED++ AI AKHLIYI
Sbjct: 170 PYTFFSQRQGCKVSLYQDAHIPDNFVPRIPLAGGKNYEPQRCWEDIFDAISNAKHLIYIT 229
Query: 182 GWSLNPKMVLVRDSQTEIAHARGVQLGELLKHKAEEGVAVRIMLWDDETSLPIIKNKGVM 241
GWS+ ++ LVRDS+ V +GELLK KA EGV V +++WDD TS+ ++K G+M
Sbjct: 230 GWSVYAEIALVRDSRRP-KPGGDVTIGELLKKKASEGVRVLLLVWDDRTSVDVLKKDGLM 288
Query: 242 RTHDEDAFAYFKHTKVICKLCPR---------LHHKFPTLFAHHQKTITVDAR--AQDSI 290
THDE+ +F+ + V C LCPR + T+F HHQK + VD+ ++
Sbjct: 289 ATHDEETENFFRGSDVHCILCPRNPDDGGSIVQSLQISTMFTHHQKIVVVDSEMPSRGGS 348
Query: 291 FDREIMSFVGGLDLCDGRYDTEKHSLFQTLNSESHCFDFYQINIAGASLHKGGPREPWHD 350
R I+SFVGG+DLCDGRYDT HSLF+TL++ H DF+Q N GA++ KGGPREPWHD
Sbjct: 349 EMRRIVSFVGGIDLCDGRYDTPFHSLFRTLDTVHHD-DFHQPNFTGAAITKGGPREPWHD 407
Query: 351 VHACITGEAAWDVLTNFEQRWTKQCDPSLLVPISSIPNLGHKSNIIPSSNYFNQRN--WK 408
+H+ + G AWDV+ NFEQRW+KQ +LV + + ++ I PS F + + W
Sbjct: 408 IHSRLEGPIAWDVMYNFEQRWSKQGGKDILVKLRDLSDI----IITPSPVMFQEDHDVWN 463
Query: 409 VQVFRSIDHVSASQL--------------AKNLTVERSIHEAYVEAIRKAERFIYIENQY 454
VQ+FRSID +A+ K+ ++RSI +AY+ AIR+A+ FIY+ENQY
Sbjct: 464 VQLFRSIDGGAAAGFPESPEAAAEAGLVSGKDNIIDRSIQDAYIHAIRRAKDFIYVENQY 523
Query: 455 FIGGCQLWEKD----KHCGCRNLIPIEIALKVVSKIKAKERFAVYILIPMWPEGVPTSDP 510
F+G W D + +LIP E++LK+VSKI+ E+F VY+++PMWPEG+P S
Sbjct: 524 FLGSSFAWAADGITPEDINALHLIPKELSLKIVSKIEKGEKFRVYVVVPMWPEGLPESGS 583
Query: 511 VQDILHWTRETMAMMYKLIGEAIQESGQVGHPRDFLNFFCLATREEKKSNGEFVPPYSPH 570
VQ IL W R TM MMYK + +A++ G PR++L FFCL RE KK +GE+ P P
Sbjct: 584 VQAILDWQRRTMEMMYKDVIQALRAQGLEEDPRNYLTFFCLGNREVKK-DGEYEPAEKPD 642
Query: 571 PMTQYWNAQMHRRFMVYVHSKLMIVDDVYLLIGSANINQRSMDGQRDTEIAIGCYQ---L 627
P T Y AQ RRFM+YVH+K+MIVDD Y++IGSANINQRSMDG RD+EIA+G YQ L
Sbjct: 643 PDTDYMRAQEARRFMIYVHTKMMIVDDEYIIIGSANINQRSMDGARDSEIAMGGYQPHHL 702
Query: 628 PKNDDQNSEDISAYRLSLWYEHTGLAEGLFREPESLECVQKICSIGDEMWNIYSGEEVV- 686
+ I +R+SLWYEH G+ + F +P SLEC++K+ I D+ W+ YS E +
Sbjct: 703 SHRQPARGQ-IHGFRMSLWYEHLGMLDETFLDPSSLECIEKVNRISDKYWDFYSSESLEH 761
Query: 687 DMDGVHLVTYPVNVTPDGLIEDLVDEGGN-FPDTKTPVKGKRSKVLPPICTT 737
D+ G HL+ YP+ V +G I +L G FPDTK + G +S LPPI TT
Sbjct: 762 DLPG-HLLRYPIGVASEGDITEL--PGFEFFPDTKARILGTKSDYLPPILTT 810
|
Hydrolyzes glycerol-phospholipids at the terminal phosphodiesteric bond. Plays an important role in various cellular processes, including phytohormone action and response to stress, characterized by acidification of the cell. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 1 EC: . EC: 4 EC: . EC: 4 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 737 | ||||||
| 224134539 | 759 | predicted protein [Populus trichocarpa] | 0.990 | 0.961 | 0.804 | 0.0 | |
| 255572971 | 762 | phospholipase d, putative [Ricinus commu | 0.995 | 0.963 | 0.798 | 0.0 | |
| 356556716 | 759 | PREDICTED: phospholipase D epsilon-like | 0.986 | 0.957 | 0.761 | 0.0 | |
| 297743101 | 950 | unnamed protein product [Vitis vinifera] | 0.982 | 0.762 | 0.751 | 0.0 | |
| 225442315 | 752 | PREDICTED: phospholipase D epsilon-like | 0.982 | 0.962 | 0.751 | 0.0 | |
| 357454681 | 756 | Phospholipase D epsilon [Medicago trunca | 0.989 | 0.964 | 0.750 | 0.0 | |
| 356528853 | 770 | PREDICTED: phospholipase D epsilon-like | 0.989 | 0.946 | 0.735 | 0.0 | |
| 356522198 | 786 | PREDICTED: phospholipase D epsilon-like | 0.989 | 0.927 | 0.727 | 0.0 | |
| 358344689 | 734 | Phospholipase D epsilon [Medicago trunca | 0.959 | 0.963 | 0.730 | 0.0 | |
| 449458181 | 761 | PREDICTED: phospholipase D epsilon-like | 0.990 | 0.959 | 0.702 | 0.0 |
| >gi|224134539|ref|XP_002327429.1| predicted protein [Populus trichocarpa] gi|222835983|gb|EEE74404.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1257 bits (3252), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 593/737 (80%), Positives = 654/737 (88%), Gaps = 7/737 (0%)
Query: 3 LQCVFVNGKPTYVTIKIDNKKVAKTSHEHDRVWNQTFQILCAHPADATITITLKTKCSVL 62
C+F+NG PTYVTIKI NKKVAKTSHE DRVWNQTF ILCAH D+TITIT+KTKCS+L
Sbjct: 28 FNCIFMNGSPTYVTIKIGNKKVAKTSHECDRVWNQTFHILCAHSLDSTITITMKTKCSIL 87
Query: 63 GKIHIQALQILNEASLISGFFPLEMENGKPNPDLRLRFMLWFKPAAYEPTWGKIISNGEF 122
GK HIQA +I+ EASLI+GFFPL MENGKPNP L+LRFMLWFKPA E TW KI+ NGEF
Sbjct: 88 GKFHIQAHKIVTEASLINGFFPLVMENGKPNPQLKLRFMLWFKPAELETTWAKILDNGEF 147
Query: 123 QGLRNASFPQRSNCHVKLYHDAHHSSSFEPPYDLCGSPGKLWEDVYKAIEGAKHLIYIAG 182
QGLRNA+FPQRSNCHV LY DAHH SSF+PP+DLCGSP KLWEDVYKA+EGAKHLIYIAG
Sbjct: 148 QGLRNATFPQRSNCHVTLYQDAHHCSSFKPPFDLCGSPTKLWEDVYKAVEGAKHLIYIAG 207
Query: 183 WSLNPKMVLVRDSQTEIAHARGVQLGELLKHKAEEGVAVRIMLWDDETSLPIIKNKGVMR 242
WS NPKMVLVRD +T++ HARGV LGELLK K EEGVAVR+MLWDDETSLP IKNKGVM
Sbjct: 208 WSFNPKMVLVRDPETDMPHARGVMLGELLKRKGEEGVAVRVMLWDDETSLPFIKNKGVMG 267
Query: 243 THDEDAFAYFKHTKVICKLCPRLHHKFPTLFAHHQKTITVDARAQDSIFDREIMSFVGGL 302
HDEDAFAYFKHTKVICKLCPRLHHKFPTLFAHHQKTITVDARA+DSI +REIMSFVGGL
Sbjct: 268 VHDEDAFAYFKHTKVICKLCPRLHHKFPTLFAHHQKTITVDARARDSISEREIMSFVGGL 327
Query: 303 DLCDGRYDTEKHSLFQTLNSESHCFDFYQINIAGASLHKGGPREPWHDVHACITGEAAWD 362
DLCDGRYDTE+HSLF TLN+ESHCFDFYQ NIAGASL KGGPREPWHD HACI G+AA D
Sbjct: 328 DLCDGRYDTERHSLFHTLNTESHCFDFYQTNIAGASLRKGGPREPWHDAHACIVGQAALD 387
Query: 363 VLTNFEQRWTKQCDPSLLVPISSIPNLGHKSNIIPSSNYFNQRNWKVQVFRSIDHVSASQ 422
VLTNFEQRW KQCD S+LVPISSIPNL H+ PSS N RNWKVQVFRSIDHVSA
Sbjct: 388 VLTNFEQRWNKQCDGSVLVPISSIPNLMHQP--FPSS-VSNDRNWKVQVFRSIDHVSAIH 444
Query: 423 LAKNLTVERSIHEAYVEAIRKAERFIYIENQYFIGGCQLWEKDKHCGCRNLIPIEIALKV 482
LA+NL VERSIHEAYVEAIR+AERFIYIENQYFIGGCQLW++D+HCGC NLIPIEIALKV
Sbjct: 445 LARNLRVERSIHEAYVEAIRRAERFIYIENQYFIGGCQLWDEDRHCGCTNLIPIEIALKV 504
Query: 483 VSKIKAKERFAVYILIPMWPEGVPTSDPVQDILHWTRETMAMMYKLIGEAIQESGQVGHP 542
V+KI+AKERFAVYIL+PMWPEGVP S+PVQDILHWTR+TMAMMYKL+GEA+QESG+ GHP
Sbjct: 505 VNKIRAKERFAVYILMPMWPEGVPDSEPVQDILHWTRQTMAMMYKLVGEALQESGEPGHP 564
Query: 543 RDFLNFFCLATREEKKSNGEFVPPYSPHPMTQYWNAQMHRRFMVYVHSKLMIVDDVYLLI 602
RD+LNFFCLA REE ++ GE VPPYSPHP TQYWNAQ HRRFMVYVHSKLMIVDD Y+LI
Sbjct: 565 RDYLNFFCLANREE-ENKGELVPPYSPHPSTQYWNAQKHRRFMVYVHSKLMIVDDAYMLI 623
Query: 603 GSANINQRSMDGQRDTEIAIGCYQLPKNDD--QNSEDISAYRLSLWYEHTGLAEGLFREP 660
GSAN+NQRSMDG+RDTEIAIGCYQ PKN + +N DI AYR+SLWYEHTGL E +F EP
Sbjct: 624 GSANVNQRSMDGRRDTEIAIGCYQ-PKNGENTRNPRDILAYRMSLWYEHTGLDEEIFLEP 682
Query: 661 ESLECVQKICSIGDEMWNIYSGEEVVDMDGVHLVTYPVNVTPDGLIEDLVDEGGNFPDTK 720
ESL C Q++ +G++MWN+Y+GEEVVDM+GVHLV YP+ VT DG +EDLVD GGNFPDTK
Sbjct: 683 ESLACAQRMRLVGEQMWNVYAGEEVVDMEGVHLVNYPLRVTKDGAVEDLVDGGGNFPDTK 742
Query: 721 TPVKGKRSKVLPPICTT 737
+PVKG+RS +LPPI TT
Sbjct: 743 SPVKGRRSNMLPPIFTT 759
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255572971|ref|XP_002527416.1| phospholipase d, putative [Ricinus communis] gi|223533226|gb|EEF34982.1| phospholipase d, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1234 bits (3193), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 588/736 (79%), Positives = 649/736 (88%), Gaps = 2/736 (0%)
Query: 3 LQCVFVNGKPTYVTIKIDNKKVAKTSHEHDRVWNQTFQILCAHPADATITITLKTKCSVL 62
C+F+NGKPTYVTIKI NKKVAKTS EHDRVWNQTFQILCAHP D+ ITIT+KTKCS+L
Sbjct: 28 FNCLFLNGKPTYVTIKIGNKKVAKTSQEHDRVWNQTFQILCAHPLDSIITITMKTKCSIL 87
Query: 63 GKIHIQALQILNEASLISGFFPLEMENGKPNPDLRLRFMLWFKPAAYEPTWGKIISNGEF 122
GK HIQA +I+ EA+ I+GFFPL ME GKPNP+L+LRFMLWFKPA EPTW KIISNG+
Sbjct: 88 GKFHIQADKIVKEATFINGFFPLIMETGKPNPELKLRFMLWFKPAQLEPTWRKIISNGQS 147
Query: 123 QGLRNASFPQRSNCHVKLYHDAHHSSSFEPPYDLCGSPGKLWEDVYKAIEGAKHLIYIAG 182
QGLRNA+FPQRSNCHV LY DAHH ++F+PP LCGSP KLWEDVYKAI+GAK LIYIAG
Sbjct: 148 QGLRNATFPQRSNCHVTLYQDAHHLNTFQPPLALCGSPRKLWEDVYKAIDGAKLLIYIAG 207
Query: 183 WSLNPKMVLVRDSQTEIAHARGVQLGELLKHKAEEGVAVRIMLWDDETSLPIIKNKGVMR 242
WS NPKMVLVRDS+T+I HARG++LG+LLK KAEEGVAVRIM+WDDETSLPIIKNKGVM
Sbjct: 208 WSFNPKMVLVRDSETDIPHARGLKLGDLLKRKAEEGVAVRIMIWDDETSLPIIKNKGVMG 267
Query: 243 THDEDAFAYFKHTKVICKLCPRLHHKFPTLFAHHQKTITVDARAQDSIFDREIMSFVGGL 302
THDEDAFAYFKHTKVICKLCPRLH+KFPT FAHHQKTITVD RA DSI DREIMSF+GGL
Sbjct: 268 THDEDAFAYFKHTKVICKLCPRLHNKFPTFFAHHQKTITVDTRANDSINDREIMSFIGGL 327
Query: 303 DLCDGRYDTEKHSLFQTLNSESHCFDFYQINIAGASLHKGGPREPWHDVHACITGEAAWD 362
DLCDGR+DTE+HSLFQTLN+ESHC DFYQ NIAGA+L KGGPREPWHD HACI GEAAWD
Sbjct: 328 DLCDGRFDTEQHSLFQTLNAESHCGDFYQTNIAGANLQKGGPREPWHDAHACIVGEAAWD 387
Query: 363 VLTNFEQRWTKQCDPSLLVPISSIPNLGHKSNIIPSSNYFNQRNWKVQVFRSIDHVSASQ 422
VL NFEQRWTKQCDPSLL+ SSI NL H+ SS+ N RNWKVQV+RSIDHVSAS+
Sbjct: 388 VLANFEQRWTKQCDPSLLISTSSISNLRHQPYNPVSSSISNGRNWKVQVYRSIDHVSASK 447
Query: 423 LAKNLTVERSIHEAYVEAIRKAERFIYIENQYFIGGCQLWEKDKHCGCRNLIPIEIALKV 482
+A+NLT ERSIHEAYVEAIR+AERFIYIENQYFIGGC LW+KDKHCGCRNLIPIEIALK+
Sbjct: 448 MARNLTSERSIHEAYVEAIRRAERFIYIENQYFIGGCHLWDKDKHCGCRNLIPIEIALKI 507
Query: 483 VSKIKAKERFAVYILIPMWPEGVPTSDPVQDILHWTRETMAMMYKLIGEAIQESGQVGHP 542
VSKIKAKERFAVYIL+PMWPEGVP S+PVQDILHWTRETMAMMYKLIGEA+QESG+ GHP
Sbjct: 508 VSKIKAKERFAVYILMPMWPEGVPESEPVQDILHWTRETMAMMYKLIGEALQESGEPGHP 567
Query: 543 RDFLNFFCLATREEKKSNGEFVPPYSPHPMTQYWNAQMHRRFMVYVHSKLMIVDDVYLLI 602
RD+LNFFCLA REE S GEFVPPYSPH TQYWNAQ +RRFMVYVHSKLMIVDD Y+LI
Sbjct: 568 RDYLNFFCLANREE-ASKGEFVPPYSPHQGTQYWNAQKNRRFMVYVHSKLMIVDDAYILI 626
Query: 603 GSANINQRSMDGQRDTEIAIGCYQLPKNDDQNS-EDISAYRLSLWYEHTGLAEGLFREPE 661
GSAN+NQRSMDG+RDTEIAIGCYQ ++ S DI AYR+SLWYEHTGL E +P+
Sbjct: 627 GSANVNQRSMDGKRDTEIAIGCYQQENGTEKASPRDIQAYRMSLWYEHTGLVEETLLQPQ 686
Query: 662 SLECVQKICSIGDEMWNIYSGEEVVDMDGVHLVTYPVNVTPDGLIEDLVDEGGNFPDTKT 721
SLECV KI S+G+ MW IYSGEEV DM+GVHLV YP+NVT DGL+ED+ D GNFPDTKT
Sbjct: 687 SLECVGKIYSLGEAMWKIYSGEEVTDMEGVHLVNYPINVTKDGLVEDIDDGNGNFPDTKT 746
Query: 722 PVKGKRSKVLPPICTT 737
PVKG+RSKVLP + TT
Sbjct: 747 PVKGRRSKVLPCVFTT 762
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356556716|ref|XP_003546669.1| PREDICTED: phospholipase D epsilon-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1189 bits (3076), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 563/739 (76%), Positives = 635/739 (85%), Gaps = 12/739 (1%)
Query: 3 LQCVFVNGKPTYVTIKIDNKKVAKTSHEHDRVWNQTFQILCAHPADATITITLKTKCSVL 62
CV NGKP YVTI IDN +VAKT+ EH+RVWNQTFQI CAHP D+T TITLKT CSVL
Sbjct: 29 FNCVCTNGKPAYVTINIDNNRVAKTTQEHERVWNQTFQIQCAHPEDSTTTITLKTSCSVL 88
Query: 63 GKIHIQALQILNEASLISGFFPLEMENGKPNPDLRLRFMLWFKPAAYEPTWGKIISNGEF 122
GK H+QA + L E SLI+GFFPL MENGKPNP L+LRFMLWFKPA EP+W KI+SNGEF
Sbjct: 89 GKFHVQAKR-LKEESLINGFFPLLMENGKPNPQLKLRFMLWFKPADMEPSWTKILSNGEF 147
Query: 123 QGLRNASFPQRSNCHVKLYHDAHHSSSFEPPYDLCGSPGKLWEDVYKAIEGAKHLIYIAG 182
QGLR+A+FPQRSNC VKLYHDAHHSS+F+PP+DLCG+P KLWEDVYKAIEGA +LIYIAG
Sbjct: 148 QGLRDATFPQRSNCQVKLYHDAHHSSTFQPPFDLCGAPRKLWEDVYKAIEGANYLIYIAG 207
Query: 183 WSLNPKMVLVRDSQTEIAHARGVQLGELLKHKAEEGVAVRIMLWDDETSLPIIKNKGVMR 242
WS NPKMVLVRD QTEI HAR ++LGELLK KAEEGVAVR+M+WDDETSLP IKNKGVM+
Sbjct: 208 WSFNPKMVLVRDPQTEIPHAREIKLGELLKKKAEEGVAVRVMIWDDETSLPFIKNKGVMK 267
Query: 243 THDEDAFAYFKHTKVICKLCPRLHHKFPTLFAHHQKTITVDARAQDSIFDREIMSFVGGL 302
THDEDAFAYFKHTKVIC+ CPRLHH+FPTLFAHHQKTITVD RA +S+ REIMSF+GG+
Sbjct: 268 THDEDAFAYFKHTKVICRKCPRLHHEFPTLFAHHQKTITVDTRAPNSVRAREIMSFLGGV 327
Query: 303 DLCDGRYDTEKHSLFQTLNSESHCFDFYQINIAGASLHKGGPREPWHDVHACITGEAAWD 362
DLCDGRYDTEKHSLFQTL ESH DFYQ NIAGASL+KGGPREPWHD HA +TG+AAWD
Sbjct: 328 DLCDGRYDTEKHSLFQTLTEESHYHDFYQTNIAGASLNKGGPREPWHDAHASVTGDAAWD 387
Query: 363 VLTNFEQRWTKQCDPSLLVPISSIPNLGHKSNIIPS-SNYFNQRNWKVQVFRSIDHVSAS 421
VLTNFEQRWTKQCD SLLVP +++ NL IP+ S+ +RNWKVQV+RSIDHVSAS
Sbjct: 388 VLTNFEQRWTKQCDASLLVPANTLENL------IPTCSSPPKERNWKVQVYRSIDHVSAS 441
Query: 422 QLAKNLTVERSIHEAYVEAIRKAERFIYIENQYFIGGCQLWEKDKHCGCRNLIPIEIALK 481
QL + LTVERSIHEAYVEAIR+A+RF+YIENQYFIGGC LW+KD+H GCRNLIP+EIALK
Sbjct: 442 QLFRKLTVERSIHEAYVEAIRRADRFVYIENQYFIGGCHLWQKDRHSGCRNLIPVEIALK 501
Query: 482 VVSKIKAKERFAVYILIPMWPEGVPTSDPVQDILHWTRETMAMMYKLIGEAIQESGQVGH 541
VVSKIKA+ERFAVYI+IPMWPEGVP S+PVQDILHWTRETM MMYKLIGEAI ESG+ GH
Sbjct: 502 VVSKIKARERFAVYIVIPMWPEGVPESEPVQDILHWTRETMIMMYKLIGEAIIESGEPGH 561
Query: 542 PRDFLNFFCLATREEKKSNGEFVPPYSPHPMTQYWNAQMHRRFMVYVHSKLMIVDDVYLL 601
PRD+LNFFCLA R EKK E++ P+SPHP TQYWNAQ +RRF VYVHSK+MIVDD+Y+L
Sbjct: 562 PRDYLNFFCLANR-EKKGKEEYLSPHSPHPETQYWNAQKNRRFPVYVHSKIMIVDDIYIL 620
Query: 602 IGSANINQRSMDGQRDTEIAIGCYQLPKNDDQ---NSEDISAYRLSLWYEHTGLAEGLFR 658
IGSAN+NQRSMDGQRDTEIAIG YQ D + DI AYR+SLWYEHTG+ E LF
Sbjct: 621 IGSANVNQRSMDGQRDTEIAIGAYQSQDGADHHIISRGDIHAYRMSLWYEHTGITEELFL 680
Query: 659 EPESLECVQKICSIGDEMWNIYSGEEVVDMDGVHLVTYPVNVTPDGLIEDLVDEGGNFPD 718
EPESL CV+++ SIGD MW +YS EE VDM+GVHLV+YPV VT +G ++D VD G +FPD
Sbjct: 681 EPESLSCVKRMLSIGDHMWGVYSSEETVDMEGVHLVSYPVKVTQEGSVKDTVDGGDHFPD 740
Query: 719 TKTPVKGKRSKVLPPICTT 737
TK+PVKGKRSK L PI TT
Sbjct: 741 TKSPVKGKRSKFLAPIFTT 759
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297743101|emb|CBI35968.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1171 bits (3029), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 553/736 (75%), Positives = 632/736 (85%), Gaps = 12/736 (1%)
Query: 3 LQCVFVNGKPTYVTIKIDNKKVAKTSHEHDRVWNQTFQILCAHPADATITITLKTKCSVL 62
C+F+NGK YVTIKID+KKVAKTSHE DRVWNQTFQILCAH D+TITITLKTKCS+L
Sbjct: 226 FNCMFLNGKACYVTIKIDDKKVAKTSHESDRVWNQTFQILCAHLIDSTITITLKTKCSIL 285
Query: 63 GKIHIQALQILNEASLISGFFPLEMENGKPNPDLRLRFMLWFKPAAYEPTWGKIISNGEF 122
G+I IQA QI++EAS I G+FPL MENG+PNP+L+LRFMLWF+PA +EPTWG I+ NG+F
Sbjct: 286 GRIQIQAHQIVHEASFIDGYFPLLMENGRPNPELKLRFMLWFRPAEFEPTWGNILWNGDF 345
Query: 123 QGLRNASFPQRSNCHVKLYHDAHHSSSFEPPYDLCGSPGKLWEDVYKAIEGAKHLIYIAG 182
QG++NA+FPQRS+C V LY DAHH S+F+PPY LC +P KLWEDVYKAI+ AK+LIYIAG
Sbjct: 346 QGVKNATFPQRSDCSVILYQDAHHCSTFQPPYSLCKAPRKLWEDVYKAIDDAKYLIYIAG 405
Query: 183 WSLNPKMVLVRDSQTEIAHARGVQLGELLKHKAEEGVAVRIMLWDDETSLPIIKNKGVMR 242
WS NPKMVLVRD QT+I + GV+LGELLK KAEEGVAVRIM+WDDETSLP+IKN+GVM
Sbjct: 406 WSFNPKMVLVRDPQTDIPYGHGVKLGELLKRKAEEGVAVRIMVWDDETSLPLIKNEGVMS 465
Query: 243 THDEDAFAYFKHTKVICKLCPRLHHKFPTLFAHHQKTITVDARAQDSIFDREIMSFVGGL 302
THDE+AFAYFKHTKV+CKLCPRLH KFPTLFAHHQKTITVD+R+ S REIMSFVGGL
Sbjct: 466 THDEEAFAYFKHTKVVCKLCPRLHFKFPTLFAHHQKTITVDSRSSISPSHREIMSFVGGL 525
Query: 303 DLCDGRYDTEKHSLFQTLNSESHCFDFYQINIAGASLHKGGPREPWHDVHACITGEAAWD 362
DLC+GRYDTE+HSLF+TLN+ESH DFYQ ++ GA L KGGPREPWHD HACITGEAA D
Sbjct: 526 DLCNGRYDTEEHSLFRTLNTESHSQDFYQTSLIGACLQKGGPREPWHDAHACITGEAARD 585
Query: 363 VLTNFEQRWTKQCDPSLLVPISSIPNLGHKSNIIPSSNYFNQRNWKVQVFRSIDHVSASQ 422
VLTNFEQRW+KQC+PSLLVPI +I L IPS +R+WKVQV+RSIDHVSAS
Sbjct: 586 VLTNFEQRWSKQCNPSLLVPIGTITELAS----IPS-----ERDWKVQVYRSIDHVSASH 636
Query: 423 LAKNLTVERSIHEAYVEAIRKAERFIYIENQYFIGGCQLWEKDKHCGCRNLIPIEIALKV 482
L +N VE+SIHEAYVEAIR+AERFIYIENQYFIGGC LWEKD+H GCRNLIPIEIALKV
Sbjct: 637 LPRNFAVEQSIHEAYVEAIRRAERFIYIENQYFIGGCHLWEKDQHAGCRNLIPIEIALKV 696
Query: 483 VSKIKAKERFAVYILIPMWPEGVPTSDPVQDILHWTRETMAMMYKLIGEAIQESGQVGHP 542
SKI+AKERFAVYILIPMWPEG P S+P QDILHWTRETMAMMY+LIGEAI E+G GHP
Sbjct: 697 ASKIRAKERFAVYILIPMWPEGAPESEPGQDILHWTRETMAMMYRLIGEAIDENGGSGHP 756
Query: 543 RDFLNFFCLATREEKKSNGEFVPPYSPHPMTQYWNAQMHRRFMVYVHSKLMIVDDVYLLI 602
RD+LNFFCLA REE K GE+ P+ PHP TQYWNAQ HRRFMVYVHSKLMIVDD Y+LI
Sbjct: 757 RDYLNFFCLANREE-KGKGEYASPHPPHPATQYWNAQKHRRFMVYVHSKLMIVDDTYILI 815
Query: 603 GSANINQRSMDGQRDTEIAIGCYQLPKNDDQNSE-DISAYRLSLWYEHTGLAEGLFREPE 661
GSAN+NQRSMDGQRDTEIA+GCYQ +++ DI AYR+SLWYEHTGL E +F+EP+
Sbjct: 816 GSANVNQRSMDGQRDTEIAVGCYQSKNGENEMCRGDIHAYRMSLWYEHTGLVEVVFQEPQ 875
Query: 662 SLECVQKICSIGDEMWNIYSGEEVVDMDGVHLVTYPVNVTPDGLIEDLVDEGGNFPDTKT 721
SLECV+++ IG++MW IYS EEV DM+GVHLVTYPV VT DG +EDL EGGNFPDT T
Sbjct: 876 SLECVERLRFIGEKMWGIYSAEEVEDMEGVHLVTYPVTVTKDGSVEDLA-EGGNFPDTNT 934
Query: 722 PVKGKRSKVLPPICTT 737
P++G+RS+VLPPI TT
Sbjct: 935 PIRGRRSRVLPPIFTT 950
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225442315|ref|XP_002276169.1| PREDICTED: phospholipase D epsilon-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1170 bits (3026), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 553/736 (75%), Positives = 632/736 (85%), Gaps = 12/736 (1%)
Query: 3 LQCVFVNGKPTYVTIKIDNKKVAKTSHEHDRVWNQTFQILCAHPADATITITLKTKCSVL 62
C+F+NGK YVTIKID+KKVAKTSHE DRVWNQTFQILCAH D+TITITLKTKCS+L
Sbjct: 28 FNCMFLNGKACYVTIKIDDKKVAKTSHESDRVWNQTFQILCAHLIDSTITITLKTKCSIL 87
Query: 63 GKIHIQALQILNEASLISGFFPLEMENGKPNPDLRLRFMLWFKPAAYEPTWGKIISNGEF 122
G+I IQA QI++EAS I G+FPL MENG+PNP+L+LRFMLWF+PA +EPTWG I+ NG+F
Sbjct: 88 GRIQIQAHQIVHEASFIDGYFPLLMENGRPNPELKLRFMLWFRPAEFEPTWGNILWNGDF 147
Query: 123 QGLRNASFPQRSNCHVKLYHDAHHSSSFEPPYDLCGSPGKLWEDVYKAIEGAKHLIYIAG 182
QG++NA+FPQRS+C V LY DAHH S+F+PPY LC +P KLWEDVYKAI+ AK+LIYIAG
Sbjct: 148 QGVKNATFPQRSDCSVILYQDAHHCSTFQPPYSLCKAPRKLWEDVYKAIDDAKYLIYIAG 207
Query: 183 WSLNPKMVLVRDSQTEIAHARGVQLGELLKHKAEEGVAVRIMLWDDETSLPIIKNKGVMR 242
WS NPKMVLVRD QT+I + GV+LGELLK KAEEGVAVRIM+WDDETSLP+IKN+GVM
Sbjct: 208 WSFNPKMVLVRDPQTDIPYGHGVKLGELLKRKAEEGVAVRIMVWDDETSLPLIKNEGVMS 267
Query: 243 THDEDAFAYFKHTKVICKLCPRLHHKFPTLFAHHQKTITVDARAQDSIFDREIMSFVGGL 302
THDE+AFAYFKHTKV+CKLCPRLH KFPTLFAHHQKTITVD+R+ S REIMSFVGGL
Sbjct: 268 THDEEAFAYFKHTKVVCKLCPRLHFKFPTLFAHHQKTITVDSRSSISPSHREIMSFVGGL 327
Query: 303 DLCDGRYDTEKHSLFQTLNSESHCFDFYQINIAGASLHKGGPREPWHDVHACITGEAAWD 362
DLC+GRYDTE+HSLF+TLN+ESH DFYQ ++ GA L KGGPREPWHD HACITGEAA D
Sbjct: 328 DLCNGRYDTEEHSLFRTLNTESHSQDFYQTSLIGACLQKGGPREPWHDAHACITGEAARD 387
Query: 363 VLTNFEQRWTKQCDPSLLVPISSIPNLGHKSNIIPSSNYFNQRNWKVQVFRSIDHVSASQ 422
VLTNFEQRW+KQC+PSLLVPI +I L IPS +R+WKVQV+RSIDHVSAS
Sbjct: 388 VLTNFEQRWSKQCNPSLLVPIGTITELAS----IPS-----ERDWKVQVYRSIDHVSASH 438
Query: 423 LAKNLTVERSIHEAYVEAIRKAERFIYIENQYFIGGCQLWEKDKHCGCRNLIPIEIALKV 482
L +N VE+SIHEAYVEAIR+AERFIYIENQYFIGGC LWEKD+H GCRNLIPIEIALKV
Sbjct: 439 LPRNFAVEQSIHEAYVEAIRRAERFIYIENQYFIGGCHLWEKDQHAGCRNLIPIEIALKV 498
Query: 483 VSKIKAKERFAVYILIPMWPEGVPTSDPVQDILHWTRETMAMMYKLIGEAIQESGQVGHP 542
SKI+AKERFAVYILIPMWPEG P S+P QDILHWTRETMAMMY+LIGEAI E+G GHP
Sbjct: 499 ASKIRAKERFAVYILIPMWPEGAPESEPGQDILHWTRETMAMMYRLIGEAIDENGGSGHP 558
Query: 543 RDFLNFFCLATREEKKSNGEFVPPYSPHPMTQYWNAQMHRRFMVYVHSKLMIVDDVYLLI 602
RD+LNFFCLA REE K GE+ P+ PHP TQYWNAQ HRRFMVYVHSKLMIVDD Y+LI
Sbjct: 559 RDYLNFFCLANREE-KGKGEYASPHPPHPATQYWNAQKHRRFMVYVHSKLMIVDDTYILI 617
Query: 603 GSANINQRSMDGQRDTEIAIGCYQLPKNDDQNSE-DISAYRLSLWYEHTGLAEGLFREPE 661
GSAN+NQRSMDGQRDTEIA+GCYQ +++ DI AYR+SLWYEHTGL E +F+EP+
Sbjct: 618 GSANVNQRSMDGQRDTEIAVGCYQSKNGENEMCRGDIHAYRMSLWYEHTGLVEVVFQEPQ 677
Query: 662 SLECVQKICSIGDEMWNIYSGEEVVDMDGVHLVTYPVNVTPDGLIEDLVDEGGNFPDTKT 721
SLECV+++ IG++MW IYS EEV DM+GVHLVTYPV VT DG +EDL EGGNFPDT T
Sbjct: 678 SLECVERLRFIGEKMWGIYSAEEVEDMEGVHLVTYPVTVTKDGSVEDLA-EGGNFPDTNT 736
Query: 722 PVKGKRSKVLPPICTT 737
P++G+RS+VLPPI TT
Sbjct: 737 PIRGRRSRVLPPIFTT 752
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357454681|ref|XP_003597621.1| Phospholipase D epsilon [Medicago truncatula] gi|124360405|gb|ABN08418.1| Phospholipase D/Transphosphatidylase; C2 calcium/lipid-binding region, CaLB [Medicago truncatula] gi|355486669|gb|AES67872.1| Phospholipase D epsilon [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1169 bits (3024), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 554/738 (75%), Positives = 636/738 (86%), Gaps = 9/738 (1%)
Query: 3 LQCVFVNGKPTYVTIKIDNKKVAKTSHEHDRVWNQTFQILCAHPADATITITLKTKCSVL 62
C+FVNGKP YVTIKIDNKKVAKT+ E +RVWNQTFQI CAH AD+TITITLKT C++L
Sbjct: 25 FNCLFVNGKPAYVTIKIDNKKVAKTTQESERVWNQTFQIQCAHLADSTITITLKTTCTIL 84
Query: 63 GKIHIQALQILNEASLISGFFPLEMENGKPNPDLRLRFMLWFKPAAYEPTWGKIISNGEF 122
GK HI+A Q L E SLI+G FPL MENGKPN +L+LRF+LWFKPA EP+W K++S+ EF
Sbjct: 85 GKFHIKAQQ-LKEDSLINGSFPLLMENGKPNQELKLRFILWFKPANLEPSWTKLLSSEEF 143
Query: 123 QGLRNASFPQRSNCHVKLYHDAHHSSSFEPPYDLCGSPGKLWEDVYKAIEGAKHLIYIAG 182
QGLR+A+FPQRSNCHVKLYHDAHHS +F+PP+D CG P KLWEDVYKAIEGAK+L+YIAG
Sbjct: 144 QGLRDATFPQRSNCHVKLYHDAHHSPTFQPPFDNCGVPRKLWEDVYKAIEGAKYLVYIAG 203
Query: 183 WSLNPKMVLVRDSQTEIAHARGVQLGELLKHKAEEGVAVRIMLWDDETSLPIIKNKGVMR 242
WS NPKMVLVRD QTEI HAR ++LGELLK KAEEGVAVR+M+WDDETS P IKNKGVM
Sbjct: 204 WSFNPKMVLVRDPQTEIPHAREIKLGELLKKKAEEGVAVRVMIWDDETSFPFIKNKGVMN 263
Query: 243 THDEDAFAYFKHTKVICKLCPRLHHKFPTLFAHHQKTITVDARAQDSIFDREIMSFVGGL 302
THDE+AFAYFKHTKV+C+ CPRLH KFPT+FAHHQKTITVD +A +S+ DREIMSF+GGL
Sbjct: 264 THDEEAFAYFKHTKVVCRRCPRLHDKFPTIFAHHQKTITVDTKAPNSVNDREIMSFLGGL 323
Query: 303 DLCDGRYDTEKHSLFQTLNSESHCFDFYQINIAGASLHKGGPREPWHDVHACITGEAAWD 362
DLCDGRYDTEKHSLF+TL ESH DFYQ NIAGASL+KGGPREPWHD HAC+TGEAAWD
Sbjct: 324 DLCDGRYDTEKHSLFETLTQESHYHDFYQTNIAGASLNKGGPREPWHDAHACVTGEAAWD 383
Query: 363 VLTNFEQRWTKQCDPSLLVPISSIPNLGHKSNIIPSSNYFNQRNWKVQVFRSIDHVSASQ 422
VLTNFEQRWTKQCD SLLVP +++ NL I S++ +RNWKVQV+RSIDHVSASQ
Sbjct: 384 VLTNFEQRWTKQCDSSLLVPANTLENLIP----ISSTSTSMERNWKVQVYRSIDHVSASQ 439
Query: 423 LAKNLTVERSIHEAYVEAIRKAERFIYIENQYFIGGCQLWEKDKHCGCRNLIPIEIALKV 482
L + LTVE SIHEAYVEAIR+A+RF+YIENQYFIGGC LW+KDK+ GC NLIPIEIALKV
Sbjct: 440 LFRKLTVESSIHEAYVEAIRRADRFVYIENQYFIGGCHLWQKDKNSGCTNLIPIEIALKV 499
Query: 483 VSKIKAKERFAVYILIPMWPEGVPTSDPVQDILHWTRETMAMMYKLIGEAIQESGQVGHP 542
V+KIKA+ERFAVYI+IPMWPEGVP S+PVQDILHWTRETM MMYKLIGEAI ESG+ GHP
Sbjct: 500 VNKIKARERFAVYIVIPMWPEGVPESEPVQDILHWTRETMTMMYKLIGEAIIESGEPGHP 559
Query: 543 RDFLNFFCLATREEKKSNGEFVPPYSPHPMTQYWNAQMHRRFMVYVHSKLMIVDDVYLLI 602
RD+LNFFCLA R EKK N E++PP+SP P TQYW+AQ +RRFMVYVHSKLMIVDD+Y+LI
Sbjct: 560 RDYLNFFCLANR-EKKENEEYLPPHSPLPDTQYWSAQKNRRFMVYVHSKLMIVDDLYILI 618
Query: 603 GSANINQRSMDGQRDTEIAIGCYQLPKNDDQ---NSEDISAYRLSLWYEHTGLAEGLFRE 659
GSAN+NQRSMDGQRDTEIAIG YQ ++ + DI YR+S+WYEHTG AE LF E
Sbjct: 619 GSANVNQRSMDGQRDTEIAIGGYQSHQDGVDHPISKGDIHEYRMSMWYEHTGSAEKLFLE 678
Query: 660 PESLECVQKICSIGDEMWNIYSGEEVVDMDGVHLVTYPVNVTPDGLIEDLVDEGGNFPDT 719
PESL+CVQ++CSIGD+MW IYS EE+VDM+GVHLVTYP+ VT +G +EDL + +FPDT
Sbjct: 679 PESLKCVQRMCSIGDKMWKIYSSEEIVDMEGVHLVTYPMIVTQNGSVEDLTNGEDHFPDT 738
Query: 720 KTPVKGKRSKVLPPICTT 737
K VKGKRSK+LP + TT
Sbjct: 739 KALVKGKRSKLLPSVITT 756
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356528853|ref|XP_003533012.1| PREDICTED: phospholipase D epsilon-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1154 bits (2986), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 545/741 (73%), Positives = 624/741 (84%), Gaps = 12/741 (1%)
Query: 3 LQCVFVNGKPTYVTIKIDNKKVAKTSHEHDRVWNQTFQILCAHPADATITITLKT-KCSV 61
C+ NG P YVTIKID++K AKTS E +RVWNQTFQI CAHPAD+ ITITLKT + SV
Sbjct: 36 FNCICANGNPAYVTIKIDSQKFAKTSQESNRVWNQTFQIQCAHPADSCITITLKTSRSSV 95
Query: 62 LGKIHIQALQILNEASLISGFFPLEMENGKPNPDLRLRFMLWFKPAAYEPTWGKIISNG- 120
LGK HIQA Q+L + LI+GFFPL M+NGKPNP L+L+F LWFKPA EP+W K++SN
Sbjct: 96 LGKFHIQAQQLLKKGGLINGFFPLLMDNGKPNPKLKLKFQLWFKPAELEPSWAKMLSNDW 155
Query: 121 EFQGLRNASFPQRSNCHVKLYHDAHHSSSFEPPYDLCGSPGKLWEDVYKAIEGAKHLIYI 180
EFQGLR A+FP RSNCHVKLYHDAHHSS+F+PP+DLCG+P KLWEDVYKAIEGAK+L+YI
Sbjct: 156 EFQGLREATFPLRSNCHVKLYHDAHHSSAFQPPFDLCGAPKKLWEDVYKAIEGAKYLVYI 215
Query: 181 AGWSLNPKMVLVRDSQTEIAHARGVQLGELLKHKAEEGVAVRIMLWDDETSLPIIKNKGV 240
AGWS NP MVLVRD TEI HARG++LGELLK KAEEGVAVR+MLWDDETSLP +KNKG
Sbjct: 216 AGWSFNPMMVLVRDPHTEIPHARGIKLGELLKKKAEEGVAVRVMLWDDETSLPFVKNKGE 275
Query: 241 MRTHDEDAFAYFKHTKVICKLCPRLHHKFPTLFAHHQKTITVDARAQDSIFDREIMSFVG 300
+ DE+AFAYF HTKVIC+ CPRLHH FPTLFAHHQKTITVD +A S+ DRE+MSF+G
Sbjct: 276 LNNQDEEAFAYFNHTKVICRKCPRLHHMFPTLFAHHQKTITVDTKAPKSVGDRELMSFLG 335
Query: 301 GLDLCDGRYDTEKHSLFQTLNSESHCFDFYQINIAGASLHKGGPREPWHDVHACITGEAA 360
GLDLCDGRYDTE+HSLFQTL ESHC+DFYQ +I GASL+KGGPREPWHD HAC+TGEAA
Sbjct: 336 GLDLCDGRYDTEQHSLFQTLIRESHCYDFYQTSIEGASLNKGGPREPWHDAHACVTGEAA 395
Query: 361 WDVLTNFEQRWTKQCDPSLLVPISSIPNLGHKSNIIPSSNYFNQRNWKVQVFRSIDHVSA 420
WDVLTNFEQRWTKQCDPS LVP S++ NL ++ SS+ +RNWKVQV+RSIDHVS
Sbjct: 396 WDVLTNFEQRWTKQCDPSFLVPSSTLANLMPRT----SSSTLMERNWKVQVYRSIDHVSV 451
Query: 421 SQLAKNLTVERSIHEAYVEAIRKAERFIYIENQYFIGGCQLWEKDKHCGCRNLIPIEIAL 480
S+L+ L VERSIHEAYVEAIR+AERFIYIENQYFIGGC W+KD+H GC NLIPIEIAL
Sbjct: 452 SELSTKLNVERSIHEAYVEAIRRAERFIYIENQYFIGGCHWWKKDRHSGCTNLIPIEIAL 511
Query: 481 KVVSKIKAKERFAVYILIPMWPEGVPTSDPVQDILHWTRETMAMMYKLIGEAIQESGQVG 540
KVVSKIKAKERFAVYI+IPMWPEG P S+PVQDILHWTRETM MMY+LIGEAIQESG+
Sbjct: 512 KVVSKIKAKERFAVYIVIPMWPEGEPESEPVQDILHWTRETMTMMYRLIGEAIQESGEPA 571
Query: 541 HPRDFLNFFCLATREEKKSNGEFVPPYSPHPMTQYWNAQMHRRFMVYVHSKLMIVDDVYL 600
HPRD+LNFFCLA RE+ K GE++P SP P TQYWNAQ +RRFMVYVHS MIVDD+Y+
Sbjct: 572 HPRDYLNFFCLANREQ-KGQGEYLPLDSPQPETQYWNAQKNRRFMVYVHSNFMIVDDLYI 630
Query: 601 LIGSANINQRSMDGQRDTEIAIGCYQLPKNDDQ----NSEDISAYRLSLWYEHTGLAEGL 656
LIGSAN+NQRSMDG+RDTEIAIGCYQ DD N +DI AYR+SLWYEHT + L
Sbjct: 631 LIGSANVNQRSMDGKRDTEIAIGCYQSQDGDDDTNQVNLDDIQAYRMSLWYEHTVSVDEL 690
Query: 657 FREPESLECVQKICSIGDEMWNIYSGEEVVDMDGVHLVTYPVNVTPDGLIEDLVDEGGNF 716
F EP+ LECV+++ SIGDEMW IYS EE+VDM+GVHLVTYPV VT +G +++L D G +F
Sbjct: 691 FLEPQRLECVERMRSIGDEMWEIYSSEEIVDMEGVHLVTYPVRVTQEGYVKNLTD-GVHF 749
Query: 717 PDTKTPVKGKRSKVLPPICTT 737
PDT + VKGKRSK+LPPI TT
Sbjct: 750 PDTNSLVKGKRSKILPPIFTT 770
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356522198|ref|XP_003529734.1| PREDICTED: phospholipase D epsilon-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1137 bits (2942), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 538/740 (72%), Positives = 619/740 (83%), Gaps = 11/740 (1%)
Query: 3 LQCVFVNGKPTYVTIKIDNKKVAKTSHEHDRVWNQTFQILCAHPADATITITLKTKCS-V 61
C+ NG P YVTIKID++K+AKTS E +RVWNQTFQI CAHPAD+ ITITLKT S +
Sbjct: 53 FNCICANGNPAYVTIKIDSQKLAKTSQESNRVWNQTFQIQCAHPADSCITITLKTSSSSI 112
Query: 62 LGKIHIQALQILNEASLISGFFPLEMENGKPNPDLRLRFMLWFKPAAYEPTWGKIISNG- 120
LGK HIQA Q+L + LI+GFFPL M+NGKPNP L+L+F LWFKPA EP+W K++SN
Sbjct: 113 LGKFHIQAQQLLKKGGLINGFFPLLMDNGKPNPKLKLKFQLWFKPAELEPSWAKMLSNDW 172
Query: 121 EFQGLRNASFPQRSNCHVKLYHDAHHSSSFEPPYDLCGSPGKLWEDVYKAIEGAKHLIYI 180
EFQGLR A+FP RSNC VKLYHDAHHSS+F+PP+DLCG+P KLWEDVYKAIEGAK+L+YI
Sbjct: 173 EFQGLREATFPLRSNCQVKLYHDAHHSSAFQPPFDLCGAPKKLWEDVYKAIEGAKYLVYI 232
Query: 181 AGWSLNPKMVLVRDSQTEIAHARGVQLGELLKHKAEEGVAVRIMLWDDETSLPIIKNKGV 240
AGWS NP MVLVRD TEI ARG++LGELLK KAEEGVAVR+MLWDDETSLP + NKG
Sbjct: 233 AGWSFNPMMVLVRDPLTEIPRARGIKLGELLKKKAEEGVAVRVMLWDDETSLPFVMNKGE 292
Query: 241 MRTHDEDAFAYFKHTKVICKLCPRLHHKFPTLFAHHQKTITVDARAQDSIFDREIMSFVG 300
+ DE+AFAYF HTKVIC+ CPR HH FPTLFAHHQKTITVD +A S+ DRE+MSF+G
Sbjct: 293 LNNQDEEAFAYFNHTKVICRKCPRSHHMFPTLFAHHQKTITVDTKAPKSVGDRELMSFLG 352
Query: 301 GLDLCDGRYDTEKHSLFQTLNSESHCFDFYQINIAGASLHKGGPREPWHDVHACITGEAA 360
GLDLCDGRYD+E+HSLFQTL ESHC+DFYQ +I GASL+KGGPR+PWHD HAC+TGEAA
Sbjct: 353 GLDLCDGRYDSEQHSLFQTLIRESHCYDFYQTSIEGASLNKGGPRKPWHDAHACVTGEAA 412
Query: 361 WDVLTNFEQRWTKQCDPSLLVPISSIPNLGHKSNIIPSSNYFNQRNWKVQVFRSIDHVSA 420
WDVLTNFEQRWTKQCDPS LVP S++ NL ++ SS+ +RNWKVQV+RSIDHVS
Sbjct: 413 WDVLTNFEQRWTKQCDPSFLVPSSTLANLMPRT----SSSTPTERNWKVQVYRSIDHVSV 468
Query: 421 SQLAKNLTVERSIHEAYVEAIRKAERFIYIENQYFIGGCQLWEKDKHCGCRNLIPIEIAL 480
+L+ L VERSIHEAYVEAIR+AERFIYIENQ FIGGC W+KD+H GC NLIPIEIAL
Sbjct: 469 GELSTKLNVERSIHEAYVEAIRRAERFIYIENQCFIGGCHWWKKDRHSGCTNLIPIEIAL 528
Query: 481 KVVSKIKAKERFAVYILIPMWPEGVPTSDPVQDILHWTRETMAMMYKLIGEAIQESGQVG 540
KVVSKIKAKERF+VYI+IPMWPEG P S+PVQDILHWTRETMAMMY+LIG+AIQESG+
Sbjct: 529 KVVSKIKAKERFSVYIVIPMWPEGEPESEPVQDILHWTRETMAMMYRLIGDAIQESGEPA 588
Query: 541 HPRDFLNFFCLATREEKKSNGEFVPPYSPHPMTQYWNAQMHRRFMVYVHSKLMIVDDVYL 600
HPRD+LNFFCLA RE+ K GE++P SP P TQYWNAQ +RRFMVYVHS MIVDD+Y+
Sbjct: 589 HPRDYLNFFCLANREQ-KGQGEYLPLDSPQPETQYWNAQKNRRFMVYVHSNFMIVDDLYI 647
Query: 601 LIGSANINQRSMDGQRDTEIAIGCYQLPKNDDQNS---EDISAYRLSLWYEHTGLAEGLF 657
LIGSAN+NQRSMDGQRDTEIAIGCYQ DD N +DI AYR+SLWYEHT + LF
Sbjct: 648 LIGSANVNQRSMDGQRDTEIAIGCYQSQDGDDNNQMNLDDIQAYRMSLWYEHTVSVDELF 707
Query: 658 REPESLECVQKICSIGDEMWNIYSGEEVVDMDGVHLVTYPVNVTPDGLIEDLVDEGGNFP 717
EPE LECV+++ SIGDEMW IYS EE+VDM+GVHLVTYPV VT +G ++DL D G +FP
Sbjct: 708 LEPERLECVERMRSIGDEMWEIYSSEEIVDMEGVHLVTYPVRVTQEGYVKDLTD-GVHFP 766
Query: 718 DTKTPVKGKRSKVLPPICTT 737
DT + VKGKRSK+LPPI TT
Sbjct: 767 DTNSLVKGKRSKILPPIFTT 786
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|358344689|ref|XP_003636420.1| Phospholipase D epsilon [Medicago truncatula] gi|355502355|gb|AES83558.1| Phospholipase D epsilon [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1122 bits (2901), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 539/738 (73%), Positives = 618/738 (83%), Gaps = 31/738 (4%)
Query: 3 LQCVFVNGKPTYVTIKIDNKKVAKTSHEHDRVWNQTFQILCAHPADATITITLKTKCSVL 62
C+FVNGKP YVTIKIDNKKVAKT+ E +RVWNQTFQI CAH AD+TITITLKT C++L
Sbjct: 25 FNCLFVNGKPAYVTIKIDNKKVAKTTQESERVWNQTFQIQCAHLADSTITITLKTTCTIL 84
Query: 63 GKIHIQALQILNEASLISGFFPLEMENGKPNPDLRLRFMLWFKPAAYEPTWGKIISNGEF 122
GK HI+A Q L E SLI+G FPL MENGKPN +L+LRF+LWFKPA EP+W K++S+ EF
Sbjct: 85 GKFHIKAQQ-LKEDSLINGSFPLLMENGKPNQELKLRFILWFKPANLEPSWTKLLSSEEF 143
Query: 123 QGLRNASFPQRSNCHVKLYHDAHHSSSFEPPYDLCGSPGKLWEDVYKAIEGAKHLIYIAG 182
QGLR+A+FPQRSNCHVK KLWEDVYKAIEGAK+L+YIAG
Sbjct: 144 QGLRDATFPQRSNCHVK----------------------KLWEDVYKAIEGAKYLVYIAG 181
Query: 183 WSLNPKMVLVRDSQTEIAHARGVQLGELLKHKAEEGVAVRIMLWDDETSLPIIKNKGVMR 242
WS NPKMVLVRD QTEI HAR ++LGELLK KAEEGVAVR+M+WDDETS P IKNKGVM
Sbjct: 182 WSFNPKMVLVRDPQTEIPHAREIKLGELLKKKAEEGVAVRVMIWDDETSFPFIKNKGVMN 241
Query: 243 THDEDAFAYFKHTKVICKLCPRLHHKFPTLFAHHQKTITVDARAQDSIFDREIMSFVGGL 302
THDE+AFAYFKHTKV+C+ CPRLH KFPT+FAHHQKTITVD +A +S+ DREIMSF+GGL
Sbjct: 242 THDEEAFAYFKHTKVVCRRCPRLHDKFPTIFAHHQKTITVDTKAPNSVNDREIMSFLGGL 301
Query: 303 DLCDGRYDTEKHSLFQTLNSESHCFDFYQINIAGASLHKGGPREPWHDVHACITGEAAWD 362
DLCDGRYDTEKHSLF+TL ESH DFYQ NIAGASL+KGGPREPWHD HAC+TGEAAWD
Sbjct: 302 DLCDGRYDTEKHSLFETLTQESHYHDFYQTNIAGASLNKGGPREPWHDAHACVTGEAAWD 361
Query: 363 VLTNFEQRWTKQCDPSLLVPISSIPNLGHKSNIIPSSNYFNQRNWKVQVFRSIDHVSASQ 422
VLTNFEQRWTKQCD SLLVP +++ NL I S++ +RNWKVQV+RSIDHVSASQ
Sbjct: 362 VLTNFEQRWTKQCDSSLLVPANTLENLIP----ISSTSTSMERNWKVQVYRSIDHVSASQ 417
Query: 423 LAKNLTVERSIHEAYVEAIRKAERFIYIENQYFIGGCQLWEKDKHCGCRNLIPIEIALKV 482
L + LTVE SIHEAYVEAIR+A+RF+YIENQYFIGGC LW+KDK+ GC NLIPIEIALKV
Sbjct: 418 LFRKLTVESSIHEAYVEAIRRADRFVYIENQYFIGGCHLWQKDKNSGCTNLIPIEIALKV 477
Query: 483 VSKIKAKERFAVYILIPMWPEGVPTSDPVQDILHWTRETMAMMYKLIGEAIQESGQVGHP 542
V+KIKA+ERFAVYI+IPMWPEGVP S+PVQDILHWTRETM MMYKLIGEAI ESG+ GHP
Sbjct: 478 VNKIKARERFAVYIVIPMWPEGVPESEPVQDILHWTRETMTMMYKLIGEAIIESGEPGHP 537
Query: 543 RDFLNFFCLATREEKKSNGEFVPPYSPHPMTQYWNAQMHRRFMVYVHSKLMIVDDVYLLI 602
RD+LNFFCLA R EKK N E++PP+SP P TQYW+AQ +RRFMVYVHSKLMIVDD+Y+LI
Sbjct: 538 RDYLNFFCLANR-EKKENEEYLPPHSPLPDTQYWSAQKNRRFMVYVHSKLMIVDDLYILI 596
Query: 603 GSANINQRSMDGQRDTEIAIGCYQLPKNDDQ---NSEDISAYRLSLWYEHTGLAEGLFRE 659
GSAN+NQRSMDGQRDTEIAIG YQ ++ + DI YR+S+WYEHTG AE LF E
Sbjct: 597 GSANVNQRSMDGQRDTEIAIGGYQSHQDGVDHPISKGDIHEYRMSMWYEHTGSAEKLFLE 656
Query: 660 PESLECVQKICSIGDEMWNIYSGEEVVDMDGVHLVTYPVNVTPDGLIEDLVDEGGNFPDT 719
PESL+CVQ++CSIGD+MW IYS EE+VDM+GVHLVTYP+ VT +G +EDL + +FPDT
Sbjct: 657 PESLKCVQRMCSIGDKMWKIYSSEEIVDMEGVHLVTYPMIVTQNGSVEDLTNGEDHFPDT 716
Query: 720 KTPVKGKRSKVLPPICTT 737
K VKGKRSK+LP + TT
Sbjct: 717 KALVKGKRSKLLPSVITT 734
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449458181|ref|XP_004146826.1| PREDICTED: phospholipase D epsilon-like [Cucumis sativus] gi|449476663|ref|XP_004154800.1| PREDICTED: phospholipase D epsilon-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1120 bits (2896), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 518/737 (70%), Positives = 620/737 (84%), Gaps = 7/737 (0%)
Query: 3 LQCVFVNGKPTYVTIKIDNKKVAKTSHEHDRVWNQTFQILCAHPADATITITLKTKCSVL 62
L C+F GK +YVTIKIDNK+VA+TSHE DRVWNQTF++LCAHP +T+TITLKT SVL
Sbjct: 30 LDCLFAGGKCSYVTIKIDNKEVAQTSHEQDRVWNQTFRVLCAHPLTSTVTITLKTSRSVL 89
Query: 63 GKIHIQALQILNEASLISGFFPLEMENGKPNPDLRLRFMLWFKPAAYEPTWGKIISNGEF 122
GK +IQA QIL EAS I+GFFPL MENGKP+P+L+LRFMLWFKPA YE +W K++ NGE+
Sbjct: 90 GKFYIQAQQILKEASFINGFFPLLMENGKPSPELKLRFMLWFKPAVYELSWKKMLGNGEY 149
Query: 123 QGLRNASFPQRSNCHVKLYHDAHHSSSFEPPYDLCGSPGKLWEDVYKAIEGAKHLIYIAG 182
+GLRNA+FP RSNCHV LY DAHH +F+PP+ +P +LWEDVYKAI+ AKHL+YIAG
Sbjct: 150 KGLRNATFPLRSNCHVTLYQDAHHLPTFQPPFHGSSTPRRLWEDVYKAIDNAKHLVYIAG 209
Query: 183 WSLNPKMVLVRDSQTEIAHARGVQLGELLKHKAEEGVAVRIMLWDDETSLPIIKNKGVMR 242
WS NPKMVLVRDSQT+I +A GV+LGELLK KA+EGVAVRI++WDDETSLPIIKN G+M
Sbjct: 210 WSFNPKMVLVRDSQTDIPYALGVKLGELLKQKADEGVAVRILIWDDETSLPIIKNAGIMN 269
Query: 243 THDEDAFAYFKHTKVICKLCPRLHHKFPTLFAHHQKTITVDARAQDSIFDREIMSFVGGL 302
THDEDA AYF H+KVIC+LCP+LH P +F+HHQKTI VDA+ + +REIMSF+GGL
Sbjct: 270 THDEDARAYFLHSKVICRLCPKLHPMSPPIFSHHQKTIIVDAQTHINAQNREIMSFIGGL 329
Query: 303 DLCDGRYDTEKHSLFQTLNSESHCFDFYQINIAGASLHKGGPREPWHDVHACITGEAAWD 362
DLCDGRYDTE+HSLF TLN+ESHC DFYQ +I+GA L KGGPREPWHDVHAC+TGEAAWD
Sbjct: 330 DLCDGRYDTEQHSLFHTLNTESHCRDFYQTSISGAKLQKGGPREPWHDVHACVTGEAAWD 389
Query: 363 VLTNFEQRWTKQCDPSLLVPISSIPNLGHKSNIIPSSNYFNQRNWKVQVFRSIDHVSASQ 422
+LTNFEQRWTKQ D SLLVP S + L + SN Q++W VQVFRSIDH+SASQ
Sbjct: 390 ILTNFEQRWTKQSDASLLVPTSILLKLMPQL----ESNTNPQKDWNVQVFRSIDHLSASQ 445
Query: 423 LAKNLTVERSIHEAYVEAIRKAERFIYIENQYFIGGCQLWEKDKHCGCRNLIPIEIALKV 482
+ +N+T+ER+IHEAYVEAIR+AERFIYIENQYFIGGC W++D+HCGC NLIPIEIALKV
Sbjct: 446 MFRNMTIERTIHEAYVEAIRRAERFIYIENQYFIGGCHFWDRDQHCGCTNLIPIEIALKV 505
Query: 483 VSKIKAKERFAVYILIPMWPEGVPTSDPVQDILHWTRETMAMMYKLIGEAIQESGQVGHP 542
+KIKA+ERFAVYI+IPMWPEG P S+ V+D+LHWTR+TM MMY+LIGEAIQE+G+ HP
Sbjct: 506 ANKIKARERFAVYIVIPMWPEGSPESESVEDMLHWTRQTMTMMYRLIGEAIQETGEKAHP 565
Query: 543 RDFLNFFCLATREEKKSNGEFVPPYSPHPMTQYWNAQMHRRFMVYVHSKLMIVDDVYLLI 602
RD+LNFFCLA REE++ +F+PP+SP TQYWNAQ HRRFM+YVHSK+MIVDD+Y+LI
Sbjct: 566 RDYLNFFCLANREEER-KWDFIPPHSPQHATQYWNAQQHRRFMIYVHSKVMIVDDLYILI 624
Query: 603 GSANINQRSMDGQRDTEIAIGCYQLPKNDDQ--NSEDISAYRLSLWYEHTGLAEGLFREP 660
GSAN+NQRSMDG+RDTEIA+GCYQ+ ++ N DIS +RLSLWYEHTG E +F P
Sbjct: 625 GSANVNQRSMDGERDTEIAMGCYQIENEGEELPNGRDISKFRLSLWYEHTGGFEEVFLNP 684
Query: 661 ESLECVQKICSIGDEMWNIYSGEEVVDMDGVHLVTYPVNVTPDGLIEDLVDEGGNFPDTK 720
ESL+CV+++ SIGD+ W IYSGEEV DM GVH+VTYPV V DG +EDL + GG+FPDTK
Sbjct: 685 ESLKCVERVRSIGDKSWKIYSGEEVEDMKGVHMVTYPVKVKEDGRMEDLEENGGHFPDTK 744
Query: 721 TPVKGKRSKVLPPICTT 737
P+KG+RS +LPPI TT
Sbjct: 745 CPIKGRRSMMLPPIFTT 761
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 737 | ||||||
| TAIR|locus:2035716 | 762 | PLDEPSILON "phospholipase D al | 0.976 | 0.944 | 0.646 | 5.1e-265 | |
| TAIR|locus:2145452 | 820 | PLDALPHA3 "phospholipase D alp | 0.647 | 0.581 | 0.4 | 1.9e-168 | |
| TAIR|locus:2137025 | 856 | PLDGAMMA2 "phospholipase D gam | 0.459 | 0.396 | 0.467 | 3.8e-142 | |
| TAIR|locus:2137035 | 866 | PLDGAMMA3 "phospholipase D gam | 0.459 | 0.391 | 0.470 | 1.7e-141 | |
| TAIR|locus:2137045 | 858 | PLDGAMMA1 "phospholipase D gam | 0.458 | 0.393 | 0.467 | 3.1e-140 | |
| TAIR|locus:2064607 | 1083 | PLDBETA1 "phospholipase D beta | 0.459 | 0.313 | 0.454 | 6.5e-140 | |
| TAIR|locus:2126001 | 927 | PLDBETA2 "phospholipase D beta | 0.464 | 0.368 | 0.460 | 1.7e-137 | |
| TAIR|locus:2125314 | 868 | PLDDELTA "phospholipase D delt | 0.438 | 0.372 | 0.447 | 1.7e-120 | |
| TAIR|locus:2035211 | 810 | PLDALPHA2 "phospholipase D alp | 0.625 | 0.569 | 0.469 | 4.6e-112 | |
| UNIPROTKB|P86387 | 808 | PLD1 "Phospholipase D alpha 1" | 0.625 | 0.570 | 0.466 | 6.1e-110 |
| TAIR|locus:2035716 PLDEPSILON "phospholipase D alpha 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2534 (897.1 bits), Expect = 5.1e-265, Sum P(2) = 5.1e-265
Identities = 481/744 (64%), Positives = 584/744 (78%)
Query: 5 CVFVNGKPTYVTIKIDNKKVAKTSHEHDRVWNQTFQILCAHPA-DATITITLKTKCSVLG 63
C+ K YVTIKI+ KKVAKTS E+DR+WNQTFQILCAHP D TITITLKT+CSVLG
Sbjct: 32 CICTKPKAAYVTIKINKKKVAKTSSEYDRIWNQTFQILCAHPVTDTTITITLKTRCSVLG 91
Query: 64 KIHIQALQIL-NEASLISGFFPLEMENGKPNPDLRLRFMLWFKPAAYEPTWGKIISNGEF 122
+ I A QIL + +++I+GFFPL +NG +L+L+ ++WF+PA EP W + + F
Sbjct: 92 RFRISAEQILTSNSAVINGFFPLIADNGSTKRNLKLKCLMWFRPAYLEPGWCRALEEASF 151
Query: 123 QGLRNASFPQRSNCHVKLYHDAHHSSSFEPPYD-LCGSPGKLWEDVYKAIEGAKHLIYIA 181
QG+RNASFPQRSNC V LY DAHH ++F+P D + + LWEDVYKAIE A+HL+YIA
Sbjct: 152 QGIRNASFPQRSNCRVVLYQDAHHKATFDPRVDDVPFNARNLWEDVYKAIESARHLVYIA 211
Query: 182 GWSLNPKMVLVRDSQTEIAHARGVQLGELLKHKAEEGVAVRIMLWDDETSLPIIKNKGVM 241
GW+LNP +VLVRD++TEI HA GV +GELLK K+EEGVAVR+MLW+DETSLP+IKNKGVM
Sbjct: 212 GWALNPNLVLVRDNETEIPHAVGVTVGELLKRKSEEGVAVRVMLWNDETSLPMIKNKGVM 271
Query: 242 RTHDEDAFAYFKHTKVICKLCPRLHHKFPTLFAHHQKTITVDARAQDSIF-DREIMSFVG 300
RT+ E A AYF++T V+C+LCPRLH K PT FAHHQKTIT+D R +S +REIMSF+G
Sbjct: 272 RTNVERALAYFRNTNVVCRLCPRLHKKLPTAFAHHQKTITLDTRVTNSSTKEREIMSFLG 331
Query: 301 GLDLCDGRYDTEKHSLFQTLNSESHCFDFYQINIAGASLHKGGPREPWHDVHACITGEAA 360
G DLCDGRYDTE+HSLF+TL +E+ DFYQ ++AGA L +GGPREPWHD H + G AA
Sbjct: 332 GFDLCDGRYDTEEHSLFRTLGTEA---DFYQTSVAGAKLSRGGPREPWHDCHVSVVGGAA 388
Query: 361 WDVLTNFEQRWTKQCDPSLLVPISSIPNLGHKSNIIPSSNYFNQRNWKVQVFRSIDHVSA 420
WDVL NFEQRWTKQC+PS+LV S I NL + + P+ N R W VQV RSIDH+SA
Sbjct: 389 WDVLKNFEQRWTKQCNPSVLVNTSGIRNLVNLTG--PTEE--NNRKWNVQVLRSIDHISA 444
Query: 421 SQLAKNLTVERSIHEAYVEAIRKAERFIYIENQYFIGGCQLWEK--DKHC-GCRNLIPIE 477
+++ + L VE+S+H+ YV AIRKAERFIYIENQYF+G C WE DK C GC NLIP+E
Sbjct: 445 TEMPRGLPVEKSVHDGYVAAIRKAERFIYIENQYFMGSCDHWESKNDKICSGCTNLIPVE 504
Query: 478 IALKVVSKIKAKERFAVYILIPMWPEGVPTSDPVQDILHWTRETMAMMYKLIGEAIQESG 537
IALK+ +KI+A+ERFAVYI+IPMWPEG P S+ V++ILHWTRETM+MMY++IGEAI E G
Sbjct: 505 IALKIAAKIRARERFAVYIVIPMWPEGPPESETVEEILHWTRETMSMMYQIIGEAIWEVG 564
Query: 538 QVGHPRDFLNFFCLATREEKKSNGEFVPPYSPHPMTQYWNAQMHRRFMVYVHSKLMIVDD 597
HPRD+LNFFCLA REEK+ +GEF SPH T YWNAQ +RRFMVYVHSKLMIVDD
Sbjct: 565 DKSHPRDYLNFFCLANREEKR-DGEFEAVSSPHQKTHYWNAQRNRRFMVYVHSKLMIVDD 623
Query: 598 VYLLIGSANINQRSMDGQRDTEIAIGCYQLPKNDDQNSEDISAYRLSLWYEHTG---LAE 654
Y+LIGSANINQRSMDG RDTEIAIGCYQ N N+ +I AYRLSLWYEHTG A+
Sbjct: 624 TYILIGSANINQRSMDGCRDTEIAIGCYQTNTN---NTNEIQAYRLSLWYEHTGGKITAD 680
Query: 655 GLFR-EPESLECVQKICSIGDEMWNIYSGEEVVDMDGVHLVTYPVNVTPDGLIEDLVDEG 713
L EPESLECV+ + +IG++MW IYSG++VVDM G+HLV YP++VT DG +E++ D
Sbjct: 681 DLSSSEPESLECVRGLRTIGEQMWEIYSGDKVVDMLGIHLVAYPISVTGDGAVEEVGD-- 738
Query: 714 GNFPDTKTPVKGKRSKVLPPICTT 737
G FPDTKT VKGKRSK+ PP+ TT
Sbjct: 739 GCFPDTKTLVKGKRSKMFPPVLTT 762
|
|
| TAIR|locus:2145452 PLDALPHA3 "phospholipase D alpha 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 889 (318.0 bits), Expect = 1.9e-168, Sum P(2) = 1.9e-168
Identities = 208/520 (40%), Positives = 286/520 (55%)
Query: 5 CVFVNGKPTYVTIKIDNKKVAKTSHEHDRVWNQTFQILCAHPADATITITLK----TKCS 60
C + G Y TI +D +VA+T W Q+F + AH + I T+K S
Sbjct: 53 CTSLFGGHLYATIDLDRSRVARTMMRRHPKWLQSFHVYTAHSI-SKIIFTVKEDEPVSAS 111
Query: 61 VLGKIHIQALQILNEASLISGFFPLEMENGKP-NPDLRLRFMLWFKPAAYEPTWGKIISN 119
++G+ ++ +++ I + + EN +P +L + F + W K I
Sbjct: 112 LIGRAYLPVTEVIT-GQPIDRWLDILDENRRPIQGGSKLHVRVKFTHVTQDVNWNKGIIL 170
Query: 120 GEFQGLRNASFPQRSNCHVKLYHDAHHSSSFEPPYDLCGSP-----GKLWEDVYKAIEGA 174
F G+ NA F QR C V LY DAH + + P L G + WE+++ AI A
Sbjct: 171 PSFNGVPNAYFNQREGCKVTLYQDAHVLNEY-PDVTLTGGQVIYKHHRCWEEIFDAIWEA 229
Query: 175 KHLIYIAGWSLNPKMVLVRDSQTEIAHARGVQLGELLKHKAEEGVAVRIMLWDDETSLPI 234
KHLIYIAGWS+N + LVRD + ++LGELLK KAEE V V +++WDD TS +
Sbjct: 230 KHLIYIAGWSVNTDVTLVRDPK-RTRPGGDLKLGELLKKKAEENVTVLMLVWDDRTSHEV 288
Query: 235 IKNKGVMRTHDEDAFAYFKHTKVICKLCPR-------LHHKFP--TLFAHHQKTITVDAR 285
K G+M THD++ + YFK+TKV C LCPR + F T+F HHQKTI VD+
Sbjct: 289 FKRDGLMMTHDQETYDYFKNTKVRCVLCPRNPDNGDSIVQGFEVATMFTHHQKTIVVDSE 348
Query: 286 AQDSIFDREIMSFVGGLDLCDGRYDTEKHSLFQTLNSESHCFDFYQINIAGASLHKGGPR 345
S+ R I+SF+GG+DLCDGRYDT +H LF TLNS H DF+Q N GAS+ KGGPR
Sbjct: 349 VDGSLTKRRIVSFLGGIDLCDGRYDTVEHPLFGTLNSV-HANDFHQPNFDGASIKKGGPR 407
Query: 346 EPWHDVHACITGEAAWDVLTNFEQRWTKQ-CDPSLLVPISSIPNLGHKSNIIPSSNYFNQ 404
EPWHD+H + G AAWDVL NFEQRW KQ L+ ++ + + +P N+
Sbjct: 408 EPWHDIHCKLDGPAAWDVLYNFEQRWMKQGSGRRYLISMAQLAEITVPP--LPIVQPDNE 465
Query: 405 RNWKVQVFRSIDHVS----------ASQLA----KNLTVERSIHEAYVEAIRKAERFIYI 450
W VQVFRSID + A+ + K+ +ERSI +AYV AIR+A+ FIYI
Sbjct: 466 EGWTVQVFRSIDDGAVEGFPEDPREAASIGLISGKDNVIERSIQDAYVNAIRRAKNFIYI 525
Query: 451 ENQYFIGGCQLWEKDKHCGCRNLIPIEIALKVVS-KIKAK 489
ENQYF+G W + + +++ K +S KI +K
Sbjct: 526 ENQYFLGSSFGWNS-RDINLNEINALQLIPKEISLKIVSK 564
|
|
| TAIR|locus:2137025 PLDGAMMA2 "phospholipase D gamma 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 771 (276.5 bits), Expect = 3.8e-142, Sum P(2) = 3.8e-142
Identities = 173/370 (46%), Positives = 222/370 (60%)
Query: 376 DPSLLVPISSIPNLGHKSNIIPSSNYFNQRNWKVQVFRSIDHVSASQL------------ 423
D SLL I+ IP++ S S+N + +W VQVFRSID S
Sbjct: 473 DDSLL-RINRIPDIMGLSEA-SSANDNDPESWHVQVFRSIDSTSVKGFPKDPEEATGRNL 530
Query: 424 --AKNLTVERSIHEAYVEAIRKAERFIYIENQYFIGGCQLWEKDKHCGCRNLIPIEIALK 481
KN+ ++ SIH AYV+AIR A+ FIYIENQYF+G W+ +K G NLIP+EIALK
Sbjct: 531 LCGKNILIDMSIHAAYVKAIRSAQHFIYIENQYFLGSSFNWDSNKDLGANNLIPMEIALK 590
Query: 482 VVSKIKAKERFAVYILIPMWPEGVPTSDPVQDILHWTRETMAMMYKLIGEAIQESGQVGH 541
+ +KI+A+E FA YI+IPMWPEG PTS P+Q IL+W +TM MMY+ I +A+ E G G
Sbjct: 591 IANKIRARENFAAYIVIPMWPEGAPTSKPIQRILYWQHKTMQMMYQTIYKALLEVGLDGQ 650
Query: 542 --PRDFLNFFCLATRE---EKKSNGEF----VPPYSPHPMTQYWNAQMHRRFMVYVHSKL 592
P+DFLNFFCL RE + +G P P P A RRFM+YVHSK
Sbjct: 651 LEPQDFLNFFCLGNREVGTREVPDGTVNVYNCPRKPPQPNAAQVQALKSRRFMIYVHSKG 710
Query: 593 MIVDDVYLLIGSANINQRSMDGQRDTEIAIGCYQ----LPKNDDQNSEDISAYRLSLWYE 648
M+VDD ++LIGSANINQRS++G RDTEIA+G YQ K + I YR+SLW E
Sbjct: 711 MVVDDEFVLIGSANINQRSLEGTRDTEIAMGGYQPHHSWAKKGSRPRGQIFGYRMSLWAE 770
Query: 649 HTGLAEGLFREPESLECVQKICSIGDEMWNIYSGEEVVDMDGVHLVTYPVNVTPDGLIED 708
H G E F EPE++ECV+++ + + W Y+ EEV +M G HL+ YPV V G +
Sbjct: 771 HLGFLEQEFEEPENMECVRRVRQLSELNWGQYAAEEVTEMSG-HLLKYPVQVDKTGKVSS 829
Query: 709 LVDEGGNFPD 718
L FPD
Sbjct: 830 LPG-CETFPD 838
|
|
| TAIR|locus:2137035 PLDGAMMA3 "phospholipase D gamma 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 774 (277.5 bits), Expect = 1.7e-141, Sum P(2) = 1.7e-141
Identities = 174/370 (47%), Positives = 227/370 (61%)
Query: 376 DPSLLVPISSIPNLGHKSNIIPSSNYFNQRNWKVQVFRSIDHVSASQL------------ 423
D SLL + IP++ S S+N + +W VQVFRSID S
Sbjct: 483 DDSLL-RLDRIPDIMGLSEA-SSANDNDPESWHVQVFRSIDSSSVKGFPKDPKEATGRNL 540
Query: 424 --AKNLTVERSIHEAYVEAIRKAERFIYIENQYFIGGCQLWEKDKHCGCRNLIPIEIALK 481
KN+ ++ SIH AYV+AIR A+ FIYIENQYF+G W+ +K+ G NLIP+EIALK
Sbjct: 541 LCGKNILIDMSIHAAYVKAIRSAQHFIYIENQYFLGSSFNWDSNKNLGANNLIPMEIALK 600
Query: 482 VVSKIKAKERFAVYILIPMWPEGVPTSDPVQDILHWTRETMAMMYKLIGEAIQESGQVGH 541
+ +KI+A+E+FA YI+IPMWPEG PTS+P+Q IL+W +TM MMY+ I +A+ E G G
Sbjct: 601 IANKIRAREKFAAYIVIPMWPEGAPTSNPIQRILYWQHKTMQMMYQTIYKALVEVGLDGQ 660
Query: 542 --PRDFLNFFCLATRE---EKKSNGEFVPPYSPHPMTQYWNAQMH----RRFMVYVHSKL 592
P+DFLNFFCL TRE + +G SP Q AQ+ RRFM+YVHSK
Sbjct: 661 LEPQDFLNFFCLGTREVGTREVPDGTVSVYNSPRKPPQLNAAQVQALKSRRFMIYVHSKG 720
Query: 593 MIVDDVYLLIGSANINQRSMDGQRDTEIAIGCYQ----LPKNDDQNSEDISAYRLSLWYE 648
M+VDD ++LIGSANINQRS++G RDTEIA+G YQ K + I YR+SLW E
Sbjct: 721 MVVDDEFVLIGSANINQRSLEGTRDTEIAMGGYQPHHSWAKKGSRPRGQIFGYRMSLWAE 780
Query: 649 HTGLAEGLFREPESLECVQKICSIGDEMWNIYSGEEVVDMDGVHLVTYPVNVTPDGLIED 708
H G E F EPE++ECV+++ + + W Y+ EEV +M G HL+ YPV V G +
Sbjct: 781 HLGFLEQEFEEPENMECVRRVRQLSELNWRQYAAEEVTEMPG-HLLKYPVQVDRTGKVSS 839
Query: 709 LVDEGGNFPD 718
L FPD
Sbjct: 840 LPGYE-TFPD 848
|
|
| TAIR|locus:2137045 PLDGAMMA1 "phospholipase D gamma 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 760 (272.6 bits), Expect = 3.1e-140, Sum P(2) = 3.1e-140
Identities = 173/370 (46%), Positives = 223/370 (60%)
Query: 376 DPSLLVPISSIPNLGHKSNIIPSSNYFNQRNWKVQVFRSIDHVSASQL------------ 423
D SLL I IP++ S S+N + +W VQVFRSID S
Sbjct: 476 DDSLL-RIDRIPDIVGLSEA-SSANDNDPESWHVQVFRSIDSSSVKGFPKDPKEATGRNL 533
Query: 424 --AKNLTVERSIHEAYVEAIRKAERFIYIENQYFIGGCQLWEKDKHCGCRNLIPIEIALK 481
KN+ ++ SIH AYV+AIR A+ FIYIENQYF+G W+ +K G NLIP+EIALK
Sbjct: 534 LCGKNILIDMSIHAAYVKAIRSAQHFIYIENQYFLGSSFNWDSNKDLGANNLIPMEIALK 593
Query: 482 VVSKIKAKERFAVYILIPMWPEGVPTSDPVQDILHWTRETMAMMYKLIGEAIQESGQVGH 541
+ +KI+A+E+FA YI+IPMWPEG PTS+P+Q IL+W +TM MMY+ I +A+ E G
Sbjct: 594 IANKIRAREKFAAYIVIPMWPEGAPTSNPIQRILYWQHKTMQMMYQTIYKALVEVGLDSQ 653
Query: 542 --PRDFLNFFCLATREEKKSNGEFV--PPYSPHPMTQYWNAQMH----RRFMVYVHSKLM 593
P+DFLNFFCL TRE P P P AQ+ RRFM+YVHSK M
Sbjct: 654 FEPQDFLNFFCLGTREVPVGTVSVYNSPRKPPQPNANANAAQVQALKSRRFMIYVHSKGM 713
Query: 594 IVDDVYLLIGSANINQRSMDGQRDTEIAIGCYQ-----LPKNDDQNSEDISAYRLSLWYE 648
+VDD ++LIGSANINQRS++G RDTEIA+G YQ K + + I YR+SLW E
Sbjct: 714 VVDDEFVLIGSANINQRSLEGTRDTEIAMGGYQPHYSWAMKGSRPHGQ-IFGYRMSLWAE 772
Query: 649 HTGLAEGLFREPESLECVQKICSIGDEMWNIYSGEEVVDMDGVHLVTYPVNVTPDGLIED 708
H G E F EPE++ECV+++ + + W Y+ EEV +M G HL+ YPV V G +
Sbjct: 773 HLGFLEQGFEEPENMECVRRVRQLSELNWRQYAAEEVTEMSG-HLLKYPVQVDRTGKVSS 831
Query: 709 LVDEGGNFPD 718
L FPD
Sbjct: 832 LPG-CETFPD 840
|
|
| TAIR|locus:2064607 PLDBETA1 "phospholipase D beta 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 740 (265.6 bits), Expect = 6.5e-140, Sum P(2) = 6.5e-140
Identities = 168/370 (45%), Positives = 220/370 (59%)
Query: 380 LVPISSIPNLGHKSNIIPSSNYFNQRNWKVQVFRSIDHVSASQL--------------AK 425
L+ I IP++ S+ P+ + + W VQ+FRSID S K
Sbjct: 710 LLRIDRIPDILGVSDT-PTVSENDPEAWHVQIFRSIDSNSVKGFPKDPKDATCKNLVCGK 768
Query: 426 NLTVERSIHEAYVEAIRKAERFIYIENQYFIGGCQLWEKDKHCGCRNLIPIEIALKVVSK 485
N+ ++ SIH AYV+AIR A+ FIYIENQYFIG W K G NLIP+EIALK+ K
Sbjct: 769 NVLIDMSIHTAYVKAIRAAQHFIYIENQYFIGSSYNWNAHKDIGANNLIPMEIALKIAEK 828
Query: 486 IKAKERFAVYILIPMWPEGVPTSDPVQDILHWTRETMAMMYKLIGEAIQESGQVG--HPR 543
I+A ERFA YI+IPMWPEGVPT Q IL+W +T+ MMY+ I +A+ E+G G P+
Sbjct: 829 IRANERFAAYIVIPMWPEGVPTGAATQRILYWQHKTIQMMYETIYKALVETGLEGAFSPQ 888
Query: 544 DFLNFFCLATREEKK---SNGEFVPPYSPHPMTQYWNAQMHRRFMVYVHSKLMIVDDVYL 600
D+LNFFCL RE ++G P + P ++ RRFMVYVHSK M+VDD Y+
Sbjct: 889 DYLNFFCLGNREMVDGIDNSGTGSPSNANTPQAL---SRKSRRFMVYVHSKGMVVDDEYV 945
Query: 601 LIGSANINQRSMDGQRDTEIAIGCYQLPKNDDQNSED-----ISAYRLSLWYEHTGLAEG 655
+IGSANINQRSM+G RDTEIA+G YQ P++ I YR+SLW EH +
Sbjct: 946 VIGSANINQRSMEGTRDTEIAMGAYQ-PQHTWARKHSGPRGQIYGYRMSLWAEHMATLDD 1004
Query: 656 LFREPESLECVQKICSIGDEMWNIYSGEEVVDMDGVHLVTYPVNVTPDGLIEDLVDEGGN 715
F +PES+ECV+K+ ++G+ W ++ EEV DM G HL+ YPV V G + L
Sbjct: 1005 CFTQPESIECVRKVRTMGERNWKQFAAEEVSDMRG-HLLKYPVEVDRKGKVRPLPGSE-T 1062
Query: 716 FPDTKTPVKG 725
FPD + G
Sbjct: 1063 FPDVGGNIVG 1072
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| TAIR|locus:2126001 PLDBETA2 "phospholipase D beta 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 749 (268.7 bits), Expect = 1.7e-137, Sum P(2) = 1.7e-137
Identities = 169/367 (46%), Positives = 218/367 (59%)
Query: 380 LVPISSIPNLGHKSNIIPSSNYFNQRNWKVQVFRSID------------HVSASQLA--K 425
L+ I IP++ + P+ + + W VQ+FRSID + ++ L K
Sbjct: 554 LLRIDRIPDILRVLDA-PTVSANDPEAWHVQIFRSIDSNSVKGFPKDPKYATSKNLVCGK 612
Query: 426 NLTVERSIHEAYVEAIRKAERFIYIENQYFIGGCQLWEKDKHCGCRNLIPIEIALKVVSK 485
N+ ++ SIH AYV+AIR A+ FIYIENQYFIG W K G NLIP+EIALK+ K
Sbjct: 613 NVLIDMSIHTAYVKAIRAAQHFIYIENQYFIGSSYDWNAHKDIGANNLIPMEIALKIADK 672
Query: 486 IKAKERFAVYILIPMWPEGVPTSDPVQDILHWTRETMAMMYKLIGEAIQESGQVGH--PR 543
I+AKERFA YI+IPMWPEGVPT Q IL+W +TM MMY I A+ E+G P+
Sbjct: 673 IRAKERFAAYIVIPMWPEGVPTGAATQRILYWQHKTMQMMYGTIYNALVEAGLEDEYSPQ 732
Query: 544 DFLNFFCLATREEKKSNGEFVPPYSPHPMTQYWNAQMHRRFMVYVHSKLMIVDDVYLLIG 603
D+LNFFCL RE N E + + T + RRFM+YVHSK M+VDD Y++IG
Sbjct: 733 DYLNFFCLGNREMVNGNNESGTGSASNENTPQGLCRKSRRFMIYVHSKGMVVDDEYVVIG 792
Query: 604 SANINQRSMDGQRDTEIAIGCYQLPKNDDQNSED-----ISAYRLSLWYEHTGLAEGLFR 658
SANINQRSM+G RDTEIA+G YQ P++ + I YR+SLW EH L + F
Sbjct: 793 SANINQRSMEGTRDTEIAMGAYQ-PQHTWARRQSGPRGQIYGYRMSLWAEHMALLDDCFV 851
Query: 659 EPESLECVQKICSIGDEMWNIYSGEEVVDMDGVHLVTYPVNVTPDGLIEDLVDEGGNFPD 718
EPESL CV+K+ ++ +E W + EEV +M G HL+ YPV V G + L FPD
Sbjct: 852 EPESLGCVRKVRTVAEENWEQFRSEEVSEMRG-HLMKYPVEVDRKGKVRPLPGSE-EFPD 909
Query: 719 TKTPVKG 725
V G
Sbjct: 910 VGGNVVG 916
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| TAIR|locus:2125314 PLDDELTA "phospholipase D delta" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 737 (264.5 bits), Expect = 1.7e-120, Sum P(2) = 1.7e-120
Identities = 157/351 (44%), Positives = 212/351 (60%)
Query: 406 NWKVQVFRSIDHVSAS--------------QLAKNLTVERSIHEAYVEAIRKAERFIYIE 451
NW VQ+FRSID S + AK L V++SI AY++ IR A+ FIYIE
Sbjct: 527 NWHVQIFRSIDSGSVKGFPKYEDEAEAQHLECAKRLVVDKSIQTAYIQTIRSAQHFIYIE 586
Query: 452 NQYFIGGCQLWEKDKHCGCRNLIPIEIALKVVSKIKAKERFAVYILIPMWPEGVPTSDPV 511
NQYF+G W + G NLIP+E+ALK+VSKI+AKERFAVY++IP+WPEG P S PV
Sbjct: 587 NQYFLGSSYAWPSYRDAGADNLIPMELALKIVSKIRAKERFAVYVVIPLWPEGDPKSGPV 646
Query: 512 QDILHWTRETMAMMYKLIGEAIQESGQVGHPRDFLNFFCLATREEKKSNGEFVPPYSPHP 571
Q+IL+W +TM MMY +I + ++ HP D+LNF+CL RE+ + +P +
Sbjct: 647 QEILYWQSQTMQMMYDVIAKELKAVQSDAHPLDYLNFYCLGKREQLPDD---MPATNGSV 703
Query: 572 MTQYWNAQMHRRFMVYVHSKLMIVDDVYLLIGSANINQRSMDGQRDTEIAIGCYQLPKND 631
++ +N Q RFM+YVH+K MIVDD Y+L+GSANINQRSM G +DTEIA+G YQ P +
Sbjct: 704 VSDSYNFQ---RFMIYVHAKGMIVDDEYVLMGSANINQRSMAGTKDTEIAMGAYQ-PNHT 759
Query: 632 DQNSE-----DISAYRLSLWYEHTGLAEGLFREPESLECVQKICSIGDEMWNIYSGEEVV 686
+ + YR+SLW EH G F EP LEC++K+ +I +E W + +
Sbjct: 760 WAHKGRHPRGQVYGYRMSLWAEHLGKTGDEFVEPSDLECLKKVNTISEENWKRFIDPKFS 819
Query: 687 DMDGVHLVTYPVNVTPDGLIEDLVDEGGNFPDTKTPVKGKRSKVLPPICTT 737
++ G HL+ YP+ V DG + L D FPD + G S LP TT
Sbjct: 820 ELQG-HLIKYPLQVDVDGKVSPLPDYE-TFPDVGGKIIGAHSMALPDTLTT 868
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| TAIR|locus:2035211 PLDALPHA2 "phospholipase D alpha 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1106 (394.4 bits), Expect = 4.6e-112, P = 4.6e-112
Identities = 230/490 (46%), Positives = 314/490 (64%)
Query: 271 TLFAHHQKTITVDARAQDS-IFDREIMSFVGGLDLCDGRYDTEKHSLFQTLNSESHCFDF 329
T+F HHQK + VD+ R I+SFVGGLDLCDGRYDT HSLF+TL++ H DF
Sbjct: 327 TMFTHHQKIVVVDSEMPSGGSRSRRIVSFVGGLDLCDGRYDTPFHSLFRTLDTAHHD-DF 385
Query: 330 YQINIAGASLHKGGPREPWHDVHACITGEAAWDVLTNFEQRWTKQCDPSLLVPISSIPNL 389
+Q N GA++ KGGPREPWHD+H + G AWDVL NFEQRW++Q +LV + + ++
Sbjct: 386 HQPNFTGAAITKGGPREPWHDIHCRLEGPIAWDVLYNFEQRWSRQGGKDILVKMRELGDI 445
Query: 390 G-HKSNIIPSSNY--FNQRNWK------VQVFRSIDHVSASQ---LAKNLTVERSIHEAY 437
S ++ S ++ +N + ++ F +A K+ ++RSI +AY
Sbjct: 446 IIPPSPVLFSEDHDVWNVQLFRSIDGGAAAGFPDSPEAAAEAGLVSGKDNIIDRSIQDAY 505
Query: 438 VEAIRKAERFIYIENQYFIGGCQLWEKD----KHCGCRNLIPIEIALKVVSKIKAKERFA 493
+ AIR+A+ FIYIENQYF+G W D + +LIP E++LK+VSKIKA E+F
Sbjct: 506 IHAIRRAKDFIYIENQYFLGSSFAWSADGIKPEEINALHLIPKELSLKIVSKIKAGEKFK 565
Query: 494 VYILIPMWPEGVPTSDPVQDILHWTRETMAMMYKLIGEAIQESGQVGH-PRDFLNFFCLA 552
VY+++PMWPEG+P S VQ IL W + TM MMYK + +A++E+G G PRD+L FFCL
Sbjct: 566 VYVVVPMWPEGIPESGSVQAILDWQKRTMEMMYKDVIKALRENGLEGEDPRDYLTFFCLG 625
Query: 553 TREEKKSNGEFVPPYSPHPMTQYWNAQMHRRFMVYVHSKLMIVDDVYLLIGSANINQRSM 612
RE KK +GE+ P P P T Y AQ RRFM+YVH+K+MIVDD Y++IGSANINQRSM
Sbjct: 626 NREVKK-DGEYEPSEKPEPDTDYIRAQEARRFMIYVHTKMMIVDDEYIIIGSANINQRSM 684
Query: 613 DGQRDTEIAIGCYQ---LPKNDDQNSEDISAYRLSLWYEHTGLAEGLFREPESLECVQKI 669
DG RD+EIA+G YQ L + I +R+SLWYEH G+ + F +P S EC+QK+
Sbjct: 685 DGARDSEIAMGGYQPYHLSTRQPARGQ-IHGFRMSLWYEHLGMLDETFLDPSSQECIQKV 743
Query: 670 CSIGDEMWNIYSGEEVV-DMDGVHLVTYPVNVTPDGLIEDLVDEGGNF-PDTKTPVKGKR 727
+ D+ W++YS E + D+ G HL+ YP+ + +G I +L G F PDTK + G +
Sbjct: 744 NRVADKYWDLYSSESLEHDLPG-HLLRYPIGIASEGNITEL--PGCEFFPDTKARILGVK 800
Query: 728 SKVLPPICTT 737
S +PPI TT
Sbjct: 801 SDYMPPILTT 810
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| UNIPROTKB|P86387 PLD1 "Phospholipase D alpha 1" [Carica papaya (taxid:3649)] | Back alignment and assigned GO terms |
|---|
Score = 1086 (387.4 bits), Expect = 6.1e-110, P = 6.1e-110
Identities = 228/489 (46%), Positives = 313/489 (64%)
Query: 271 TLFAHHQKTITVDARAQDSIFD-REIMSFVGGLDLCDGRYDTEKHSLFQTLNSESHCFDF 329
T+F HHQK + VD R I+SFVGG+DLCDGRYDT HSLF+TL++ H DF
Sbjct: 326 TMFTHHQKIVVVDGEMPSGESQMRRIVSFVGGIDLCDGRYDTPFHSLFRTLDTAHHD-DF 384
Query: 330 YQINIAGASLHKGGPREPWHDVHACITGEAAWDVLTNFEQRWTKQCDPSLLVPISSIPNL 389
+Q N AG+S+ KGGPREPWHD+H+ + G AWDVL NFEQRW +Q +LV + + N+
Sbjct: 385 HQPNFAGSSITKGGPREPWHDIHSRLEGPVAWDVLFNFEQRWRQQGGKDVLVNLRELDNI 444
Query: 390 GHKSN--IIPSSNY-FNQRNWKV----QVF---RSIDHVSASQLA--KNLTVERSIHEAY 437
+ + P + +N + ++ F + + + + L K+ ++RSI +AY
Sbjct: 445 IIPPSPVMFPDDHETWNVQLFRSIDGGAAFGFPETPEEAARAGLVSGKDNIIDRSIQDAY 504
Query: 438 VEAIRKAERFIYIENQYFIGGCQLWEKD----KHCGCRNLIPIEIALKVVSKIKAKERFA 493
+ AIR+A+ FIYIENQYF+G W D + +LIP E++LK+VSKI+ ERF
Sbjct: 505 INAIRRAKNFIYIENQYFLGSSFDWSSDDIKREDINALHLIPKELSLKIVSKIERGERFT 564
Query: 494 VYILIPMWPEGVPTSDPVQDILHWTRETMAMMYKLIGEAIQESGQVGHPRDFLNFFCLAT 553
VY+++PMWPEGVP S VQ IL W R TM MMYK I +A++ + PR++L FFCL
Sbjct: 565 VYVVVPMWPEGVPESASVQAILDWQRRTMEMMYKDIIQALRAKDREEDPRNYLTFFCLGN 624
Query: 554 REEKKSNGEFVPPYSPHPMTQYWNAQMHRRFMVYVHSKLMIVDDVYLLIGSANINQRSMD 613
RE KKS GE+ P P + Y AQ RRFM+YVH+K+MIVDD Y+++GSANINQRSMD
Sbjct: 625 REVKKS-GEYEPSERPEDDSDYIRAQEARRFMIYVHTKMMIVDDEYIIVGSANINQRSMD 683
Query: 614 GQRDTEIAIGCYQ---LPKNDDQNSEDISAYRLSLWYEHTGLAEGLFREPESLECVQKIC 670
G RD+EIA+G YQ L N + I +R++LWYEH G+ + F EPE++ECVQK+
Sbjct: 684 GARDSEIAMGAYQPYHLTINQPARGQ-IHGFRMALWYEHLGMLDDTFLEPENIECVQKVN 742
Query: 671 SIGDEMWNIYSGEEVV-DMDGVHLVTYPVNVTPDGLIEDLVDEGGNF-PDTKTPVKGKRS 728
+ + W++Y+ E + D+ G HL+ YP+ V+ +G + +L G F PDTK V G +S
Sbjct: 743 RVAGKYWDLYASELLEHDLPG-HLLRYPIGVSSEGDVTEL--PGTEFFPDTKARVLGAKS 799
Query: 729 KVLPPICTT 737
LPPI TT
Sbjct: 800 DYLPPILTT 808
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9C888 | PLDE1_ARATH | 3, ., 1, ., 4, ., 4 | 0.6447 | 0.9796 | 0.9475 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.1.4.4 | 0.991 |
| 3rd Layer | 3.1.4 | 0.976 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | fgenesh4_pg.C_scaffold_44000079 | phospholipase D (EC-3.1.4.4) (759 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | gw1.XVIII.245.1 | SubName- Full=Putative uncharacterized protein; (138 aa) | • | 0.899 | |||||||
 | gw1.XVI.1697.1 | 1-acylglycerol-3-phosphate O-acyltransferase (EC-2.3.1.51) (377 aa) | • | 0.899 | |||||||
 | gw1.XVI.1394.1 | hypothetical protein (823 aa) | • | 0.899 | |||||||
 | gw1.XIV.942.1 | hypothetical protein (382 aa) | • | 0.899 | |||||||
 | gw1.X.6714.1 | CDP-diacylglycerol-serine O-phosphatidyltransferase (EC-2.7.8.8) (423 aa) | • | 0.899 | |||||||
 | gw1.X.421.1 | ethanolaminephosphotransferase (EC-2.7.8.1) (383 aa) | • | 0.899 | |||||||
 | gw1.IX.3095.1 | hypothetical protein (501 aa) | • | 0.899 | |||||||
 | gw1.II.814.1 | hypothetical protein (534 aa) | • | 0.899 | |||||||
 | gw1.40.286.1 | phospholipase A1 (EC-3.1.1.32) (357 aa) | • | 0.899 | |||||||
 | gw1.1077.3.1 | annotation not avaliable (431 aa) | • | 0.899 | |||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 737 | |||
| PLN02352 | 758 | PLN02352, PLN02352, phospholipase D epsilon | 0.0 | |
| PLN02270 | 808 | PLN02270, PLN02270, phospholipase D alpha | 0.0 | |
| PLN03008 | 868 | PLN03008, PLN03008, Phospholipase D delta | 1e-165 | |
| cd09142 | 208 | cd09142, PLDc_pPLD_like_2, Catalytic domain, repea | 1e-116 | |
| cd09200 | 211 | cd09200, PLDc_pPLDbeta_2, Catalytic domain, repeat | 1e-88 | |
| cd09199 | 211 | cd09199, PLDc_pPLDalpha_2, Catalytic domain, repea | 2e-85 | |
| cd09139 | 176 | cd09139, PLDc_pPLD_like_1, Catalytic domain, repea | 1e-79 | |
| cd09197 | 178 | cd09197, PLDc_pPLDalpha_1, Catalytic domain, repea | 1e-55 | |
| cd09198 | 180 | cd09198, PLDc_pPLDbeta_1, Catalytic domain, repeat | 1e-51 | |
| cd09141 | 183 | cd09141, PLDc_vPLD1_2_yPLD_like_2, Catalytic domai | 5e-49 | |
| cd09105 | 146 | cd09105, PLDc_vPLD1_2_like_2, Catalytic domain, re | 8e-34 | |
| pfam12357 | 74 | pfam12357, PLD_C, Phospholipase D C terminal | 5e-29 | |
| PLN02866 | 1068 | PLN02866, PLN02866, phospholipase D | 6e-29 | |
| cd09104 | 147 | cd09104, PLDc_vPLD1_2_like_1, Catalytic domain, re | 1e-26 | |
| cd09138 | 146 | cd09138, PLDc_vPLD1_2_yPLD_like_1, Catalytic domai | 4e-26 | |
| cd09844 | 182 | cd09844, PLDc_vPLD1_2, Catalytic domain, repeat 2, | 2e-25 | |
| cd09845 | 182 | cd09845, PLDc_vPLD2_2, Catalytic domain, repeat 2, | 3e-24 | |
| PLN02866 | 1068 | PLN02866, PLN02866, phospholipase D | 4e-18 | |
| cd09140 | 146 | cd09140, PLDc_vPLD1_2_like_bac_1, Catalytic domain | 1e-16 | |
| cd09143 | 142 | cd09143, PLDc_vPLD1_2_like_bac_2, Catalytic domain | 2e-12 | |
| COG1502 | 438 | COG1502, Cls, Phosphatidylserine/phosphatidylglyce | 2e-12 | |
| cd09842 | 151 | cd09842, PLDc_vPLD1_1, Catalytic domain, repeat 1, | 2e-11 | |
| cd09843 | 145 | cd09843, PLDc_vPLD2_1, Catalytic domain, repeat 1, | 9e-11 | |
| cd04015 | 158 | cd04015, C2_plant_PLD, C2 domain present in plant | 5e-10 | |
| cd09110 | 154 | cd09110, PLDc_CLS_1, Catalytic domain, repeat 1, o | 5e-09 | |
| COG1502 | 438 | COG1502, Cls, Phosphatidylserine/phosphatidylglyce | 9e-07 | |
| cd09143 | 142 | cd09143, PLDc_vPLD1_2_like_bac_2, Catalytic domain | 2e-06 | |
| cd00030 | 102 | cd00030, C2, C2 domain | 5e-06 | |
| smart00155 | 28 | smart00155, PLDc, Phospholipase D | 9e-06 | |
| cd09163 | 176 | cd09163, PLDc_CLS_unchar2_2, Putative catalytic do | 1e-05 | |
| cd04052 | 111 | cd04052, C2B_Tricalbin-like, C2 domain second repe | 4e-05 | |
| TIGR04265 | 483 | TIGR04265, bac_cardiolipin, cardiolipin synthase | 8e-05 | |
| pfam13091 | 129 | pfam13091, PLDc_2, PLD-like domain | 1e-04 | |
| cd09112 | 174 | cd09112, PLDc_CLS_2, catalytic domain repeat 2 of | 1e-04 | |
| cd00138 | 119 | cd00138, PLDc_SF, Catalytic domain of phospholipas | 3e-04 | |
| cd09128 | 142 | cd09128, PLDc_unchar1_2, Putative catalytic domain | 5e-04 | |
| cd09110 | 154 | cd09110, PLDc_CLS_1, Catalytic domain, repeat 1, o | 6e-04 | |
| pfam00614 | 28 | pfam00614, PLDc, Phospholipase D Active site motif | 6e-04 | |
| cd09159 | 170 | cd09159, PLDc_ybhO_like_2, Catalytic domain, repea | 7e-04 | |
| cd09127 | 141 | cd09127, PLDc_unchar1_1, Putative catalytic domain | 0.001 | |
| cd09113 | 218 | cd09113, PLDc_ymdC_like_2, Putative catalytic doma | 0.002 | |
| cd09162 | 172 | cd09162, PLDc_CLS_unchar1_2, Putative catalytic do | 0.003 | |
| cd09132 | 122 | cd09132, PLDc_unchar4, Putative catalytic domain o | 0.003 |
| >gnl|CDD|215202 PLN02352, PLN02352, phospholipase D epsilon | Back alignment and domain information |
|---|
Score = 1432 bits (3707), Expect = 0.0
Identities = 595/735 (80%), Positives = 650/735 (88%), Gaps = 8/735 (1%)
Query: 5 CVFVNGKPTYVTIKIDNKKVAKTSHEHDRVWNQTFQILCAHPADATITITLKTKCSVLGK 64
C+F+NGK TYVTIKI NKKVAKTSHE+DRVWNQTFQILCAHP D+TITITLKTKCS+LG+
Sbjct: 30 CIFLNGKATYVTIKIGNKKVAKTSHEYDRVWNQTFQILCAHPLDSTITITLKTKCSILGR 89
Query: 65 IHIQALQILNEASLISGFFPLEMENGKPNPDLRLRFMLWFKPAAYEPTWGKIISNGEFQG 124
HIQA QI+ EAS I+GFFPL MENGKPNP+L+LRFMLWF+PA EPTW KI+ NG FQG
Sbjct: 90 FHIQAHQIVTEASFINGFFPLIMENGKPNPELKLRFMLWFRPAELEPTWCKILENGSFQG 149
Query: 125 LRNASFPQRSNCHVKLYHDAHHSSSFEPPYDLCGSPGKLWEDVYKAIEGAKHLIYIAGWS 184
LRNA+FPQRSNCHV LY DAHH S+F+PP DLCGSP KLWEDVYKAIEGAKHLIYIAGWS
Sbjct: 150 LRNATFPQRSNCHVILYQDAHHCSTFQPPVDLCGSPRKLWEDVYKAIEGAKHLIYIAGWS 209
Query: 185 LNPKMVLVRDSQTEIAHARGVQLGELLKHKAEEGVAVRIMLWDDETSLPIIKNKGVMRTH 244
NPKMVLVRD +T+I HARGV+LGELLK KAEEGVAVR+MLWDDETSLPIIKNKGVM TH
Sbjct: 210 FNPKMVLVRDPETDIPHARGVKLGELLKRKAEEGVAVRVMLWDDETSLPIIKNKGVMGTH 269
Query: 245 DEDAFAYFKHTKVICKLCPRLHHKFPTLFAHHQKTITVDARAQDSIFDREIMSFVGGLDL 304
DEDAFAYFKHTKV+CKLCPRLH KFPTLFAHHQKTITVD RA DSI +REIMSFVGGLDL
Sbjct: 270 DEDAFAYFKHTKVVCKLCPRLHKKFPTLFAHHQKTITVDTRANDSISEREIMSFVGGLDL 329
Query: 305 CDGRYDTEKHSLFQTLNSESHCFDFYQINIAGASLHKGGPREPWHDVHACITGEAAWDVL 364
CDGRYDTE+HSLF+TLN+ESHC DFYQ +IAGA L KGGPREPWHD HACI GEAAWDVL
Sbjct: 330 CDGRYDTEEHSLFRTLNTESHCQDFYQTSIAGAKLQKGGPREPWHDAHACIVGEAAWDVL 389
Query: 365 TNFEQRWTKQCDPSLLVPISSIPNLGHKSNIIPSSNYFNQRNWKVQVFRSIDHVSASQLA 424
TNFEQRWTKQC+PS+LVP SSI NL H P S+ N RNWKVQV+RSIDHVSAS +
Sbjct: 390 TNFEQRWTKQCNPSVLVPTSSIRNLVH----QPGSSESNNRNWKVQVYRSIDHVSASHMP 445
Query: 425 KNLTVERSIHEAYVEAIRKAERFIYIENQYFIGGCQLWEKDKHCGCRNLIPIEIALKVVS 484
+NL VERSIHEAYVEAIR+AERFIYIENQYFIGGC LWEKD HCGC NLIPIEIALK+ S
Sbjct: 446 RNLPVERSIHEAYVEAIRRAERFIYIENQYFIGGCHLWEKDNHCGCTNLIPIEIALKIAS 505
Query: 485 KIKAKERFAVYILIPMWPEGVPTSDPVQDILHWTRETMAMMYKLIGEAIQESGQVGHPRD 544
KI+AKERFAVYILIPMWPEGVP S+PVQDILHWTRETMAMMYKLIGEAIQESG+ GHPRD
Sbjct: 506 KIRAKERFAVYILIPMWPEGVPESEPVQDILHWTRETMAMMYKLIGEAIQESGEPGHPRD 565
Query: 545 FLNFFCLATREEKKSNGEFVPPYSPHPMTQYWNAQMHRRFMVYVHSKLMIVDDVYLLIGS 604
+LNFFCLA REE K GEFVPPYSPH TQYWNAQ +RRFMVYVHSKLMIVDD Y+LIGS
Sbjct: 566 YLNFFCLANREE-KRKGEFVPPYSPHQKTQYWNAQKNRRFMVYVHSKLMIVDDTYILIGS 624
Query: 605 ANINQRSMDGQRDTEIAIGCYQLPKN--DDQNSEDISAYRLSLWYEHTGLAEGLFREPES 662
AN+NQRSMDG RDTEIAIGCYQ KN + N DI AYR+SLWYEHTGL E F EPES
Sbjct: 625 ANVNQRSMDGCRDTEIAIGCYQ-SKNGTNTNNPRDIQAYRMSLWYEHTGLDEESFLEPES 683
Query: 663 LECVQKICSIGDEMWNIYSGEEVVDMDGVHLVTYPVNVTPDGLIEDLVDEGGNFPDTKTP 722
LECV+++ +IG++MW IYSGEEVVDM+GVHLV YP++VT DG +EDL D GNFPDTKTP
Sbjct: 684 LECVRRLRTIGEQMWEIYSGEEVVDMEGVHLVNYPISVTKDGAVEDLADGDGNFPDTKTP 743
Query: 723 VKGKRSKVLPPICTT 737
VKG+RSK+LPP+ TT
Sbjct: 744 VKGRRSKMLPPVFTT 758
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Length = 758 |
| >gnl|CDD|165912 PLN02270, PLN02270, phospholipase D alpha | Back alignment and domain information |
|---|
Score = 640 bits (1651), Expect = 0.0
Identities = 338/775 (43%), Positives = 460/775 (59%), Gaps = 67/775 (8%)
Query: 14 YVTIKIDNKKVAKT----SHEHDRVWNQTFQILCAHPADATITITLKTK----CSVLGKI 65
Y TI ++ +V +T + + W ++F I CAH A + I T+K +++G+
Sbjct: 50 YATIDLEKARVGRTRKIENEPKNPRWYESFHIYCAHMA-SNIIFTVKDDNPIGATLIGRA 108
Query: 66 HIQALQILNEASLISGFFPLEMENGKPNP---DLRLRFMLWFKPAAYEPTWGKIISNGEF 122
+I +IL+ + +E+ + NP ++ L + + WG+ I + +F
Sbjct: 109 YIPVEEILDGEEVDRW---VEILDNDKNPIHGGSKIHVKLQYFEVTKDRNWGRGIRSAKF 165
Query: 123 QGLRNASFPQRSNCHVKLYHDAHHSSSFEPPYDLCG----SPGKLWEDVYKAIEGAKHLI 178
G+ F QR C V LY DAH +F P L G P + WEDV+ AI AKHLI
Sbjct: 166 PGVPYTFFSQRQGCKVSLYQDAHIPDNFVPKIPLAGGKNYEPHRCWEDVFDAITNAKHLI 225
Query: 179 YIAGWSLNPKMVLVRDSQTEIAHARGVQLGELLKHKAEEGVAVRIMLWDDETSLPIIKNK 238
YI GWS+ ++ LVRDS+ V +GELLK KA EGV V +++WDD TS+ ++K
Sbjct: 226 YITGWSVYTEISLVRDSRRP-KPGGDVTIGELLKKKASEGVRVLLLVWDDRTSVDLLKKD 284
Query: 239 GVMRTHDEDAFAYFKHTKVICKLCPR---------LHHKFPTLFAHHQKTITVDARAQDS 289
G+M THDE+ +F+ T V C LCPR + T+F HHQK + VD+ +
Sbjct: 285 GLMATHDEETENFFRGTDVHCILCPRNPDDGGSIVQDLQISTMFTHHQKIVVVDSEMPNG 344
Query: 290 IFD-REIMSFVGGLDLCDGRYDTEKHSLFQTLNSESHCFDFYQINIAGASLHKGGPREPW 348
R I+SFVGG+DLCDGRYDT HSLF+TL++ H DF+Q N GAS+ KGGPREPW
Sbjct: 345 GSQRRRIVSFVGGIDLCDGRYDTPFHSLFRTLDTAHHD-DFHQPNFTGASITKGGPREPW 403
Query: 349 HDVHACITGEAAWDVLTNFEQRWTKQCDPSLLVPISSIPNLGHKSNIIPSSNYF---NQR 405
HD+H+ + G AWDVL NFEQRW+KQ +LV + + ++ IIP S +
Sbjct: 404 HDIHSRLEGPIAWDVLFNFEQRWSKQGGKDILVQLRELEDV-----IIPPSPVMFPDDHE 458
Query: 406 NWKVQVFRSIDHVSASQL--------------AKNLTVERSIHEAYVEAIRKAERFIYIE 451
W VQ+FRSID +A K+ ++RSI +AY+ AIR+A+ FIYIE
Sbjct: 459 VWNVQLFRSIDGGAAFGFPETPEAAAEAGLVSGKDNIIDRSIQDAYIHAIRRAKDFIYIE 518
Query: 452 NQYFIGGCQLWEKD----KHCGCRNLIPIEIALKVVSKIKAKERFAVYILIPMWPEGVPT 507
NQYF+G W D + +LIP E++LK+VSKI+A E+F VY+++PMWPEG+P
Sbjct: 519 NQYFLGSSFAWSADGIKPEDINALHLIPKELSLKIVSKIEAGEKFTVYVVVPMWPEGIPE 578
Query: 508 SDPVQDILHWTRETMAMMYKLIGEAIQESGQVGHPRDFLNFFCLATREEKKSNGEFVPPY 567
S VQ IL W R TM MMYK + +A++ G PR++L FFCL RE KKS GE+ P
Sbjct: 579 SGSVQAILDWQRRTMEMMYKDVIQALRAKGLEEDPRNYLTFFCLGNREVKKS-GEYEPSE 637
Query: 568 SPHPMTQYWNAQMHRRFMVYVHSKLMIVDDVYLLIGSANINQRSMDGQRDTEIAIGCYQ- 626
P P T Y AQ RRFM+YVH+K+MIVDD Y++IGSANINQRSMDG RD+EIA+G YQ
Sbjct: 638 KPEPDTDYIRAQEARRFMIYVHTKMMIVDDEYIIIGSANINQRSMDGARDSEIAMGGYQP 697
Query: 627 --LPKNDDQNSEDISAYRLSLWYEHTGLAEGLFREPESLECVQKICSIGDEMWNIYSGEE 684
L + I +R+SLWYEH G+ + F +PES EC+QK+ I D+ W++YS E
Sbjct: 698 YHLSTRQPARGQ-IHGFRMSLWYEHLGMLDETFLDPESEECIQKVNQIADKYWDLYSSET 756
Query: 685 VV-DMDGVHLVTYPVNVTPDGLIEDLVDEGGN-FPDTKTPVKGKRSKVLPPICTT 737
+ D+ G HL+ YP+ V +G I +L G FPDTK V G +S LPPI TT
Sbjct: 757 LEHDLPG-HLLRYPIGVASEGDITEL--PGTEFFPDTKARVLGAKSDYLPPILTT 808
|
Length = 808 |
| >gnl|CDD|178585 PLN03008, PLN03008, Phospholipase D delta | Back alignment and domain information |
|---|
Score = 498 bits (1282), Expect = e-165
Identities = 311/812 (38%), Positives = 429/812 (52%), Gaps = 111/812 (13%)
Query: 14 YVTIKIDNKKVAKT---SHEHDRVWNQTFQILCAHPADATITITLKTK----CSVLGKIH 66
YVT+ + +A+T + + +W++ F I AHP A + +K ++G
Sbjct: 80 YVTVVVPQATLARTRVLKNSQEPLWDEKFNISIAHPF-AYLEFQVKDDDVFGAQIIGTAK 138
Query: 67 IQALQILNEASLISGFFPLEMENGKPNPDLRLRFMLWFKPAAYEPTWG---KIISNGEFQ 123
I I + ISG+FP+ +GKP P + K ++ I + E +
Sbjct: 139 IPVRDIAS-GERISGWFPVLGASGKP-PKAETAIFIDMKFTPFDQIHSYRCGIAGDPERR 196
Query: 124 GLRNASFPQRSNCHVKLYHDAHHSSSFEPPYDLCGSP----GKLWEDVYKAIEGAKHLIY 179
G+R FP R V+LY DAH P L GK WED+ AI A H+IY
Sbjct: 197 GVRRTYFPVRKGSQVRLYQDAHVMDGTLPAIGLDNGKVYEHGKCWEDICYAISEAHHMIY 256
Query: 180 IAGWSLNPKMVLVRDSQTEIAHARGVQLGELLKHKAEEGVAVRIMLWDDETSLPI--IKN 237
I GWS+ K+ LVR +T++ + + LGELLK+K++EGV V +++WDD+TS IK
Sbjct: 257 IVGWSIFHKIKLVR--ETKVPRDKDMTLGELLKYKSQEGVRVLLLVWDDKTSHDKFGIKT 314
Query: 238 KGVMRTHDEDAFAYFKHTKVICKLCPRL---------HHKFP-----------TLFAHHQ 277
GVM THDE+ +FKH+ VIC L PR P TLF HHQ
Sbjct: 315 PGVMGTHDEETRKFFKHSSVICVLSPRYASSKLGLFKQQASPIFSIYVMTVVGTLFTHHQ 374
Query: 278 KTITVDARAQDSIFDREIMSFVGGLDLCDGRYDTEKHSLFQTLNSESHCF--DFYQINIA 335
K + VD +A + +R++ +F+GGLDLCDGRYDT +H + L++ F DF+
Sbjct: 375 KCVLVDTQAVGN--NRKVTAFIGGLDLCDGRYDTPEHRILHDLDT---VFKDDFHNPTFP 429
Query: 336 GASLHKGGPREPWHDVHACITGEAAWDVLTNFEQRWTKQC----------------DPSL 379
+ PR+PWHD+H I G AA+DVL NFEQRW K D +L
Sbjct: 430 AGT---KAPRQPWHDLHCRIDGPAAYDVLINFEQRWRKATRWKEFSLRLKGKTHWQDDAL 486
Query: 380 ---------LVPISSIPNLGHKSNIIPS-------SNYFNQRNWKVQVFRSIDHVSAS-- 421
L P+ L ++IIP S + NW VQ+FRSID S
Sbjct: 487 IRIGRISWILSPVFKF--LKDGTSIIPEDDPCVWVSKEDDPENWHVQIFRSIDSGSVKGF 544
Query: 422 ------------QLAKNLTVERSIHEAYVEAIRKAERFIYIENQYFIGGCQLWEKDKHCG 469
+ AK L V++SI AY++ IR A+ FIYIENQYF+G W + G
Sbjct: 545 PKYEDEAEAQHLECAKRLVVDKSIQTAYIQTIRSAQHFIYIENQYFLGSSYAWPSYRDAG 604
Query: 470 CRNLIPIEIALKVVSKIKAKERFAVYILIPMWPEGVPTSDPVQDILHWTRETMAMMYKLI 529
NLIP+E+ALK+VSKI+AKERFAVY++IP+WPEG P S PVQ+IL+W +TM MMY +I
Sbjct: 605 ADNLIPMELALKIVSKIRAKERFAVYVVIPLWPEGDPKSGPVQEILYWQSQTMQMMYDVI 664
Query: 530 GEAIQESGQVGHPRDFLNFFCLATREEKKSNGEFVPPYSPHPMTQYWNAQMHRRFMVYVH 589
+ ++ HP D+LNF+CL RE+ + +P + ++ +N Q RFM+YVH
Sbjct: 665 AKELKAVQSDAHPLDYLNFYCLGKREQLPDD---MPATNGSVVSDSYNFQ---RFMIYVH 718
Query: 590 SKLMIVDDVYLLIGSANINQRSMDGQRDTEIAIGCYQ----LPKNDDQNSEDISAYRLSL 645
+K MIVDD Y+L+GSANINQRSM G +DTEIA+G YQ + YR+SL
Sbjct: 719 AKGMIVDDEYVLMGSANINQRSMAGTKDTEIAMGAYQPNHTWAHKGRHPRGQVYGYRMSL 778
Query: 646 WYEHTGLAEGLFREPESLECVQKICSIGDEMWNIYSGEEVVDMDGVHLVTYPVNVTPDGL 705
W EH G F EP LEC++K+ +I +E W + + ++ G HL+ YP+ V DG
Sbjct: 779 WAEHLGKTGDEFVEPSDLECLKKVNTISEENWKRFIDPKFSELQG-HLIKYPLQVDVDGK 837
Query: 706 IEDLVDEGGNFPDTKTPVKGKRSKVLPPICTT 737
+ L D FPD + G S LP TT
Sbjct: 838 VSPLPDY-ETFPDVGGKIIGAHSMALPDTLTT 868
|
Length = 868 |
| >gnl|CDD|197240 cd09142, PLDc_pPLD_like_2, Catalytic domain, repeat 2, of plant phospholipase D and similar proteins | Back alignment and domain information |
|---|
Score = 347 bits (892), Expect = e-116
Identities = 124/204 (60%), Positives = 156/204 (76%), Gaps = 3/204 (1%)
Query: 425 KNLTVERSIHEAYVEAIRKAERFIYIENQYFIGGCQLWEKDKHC-GCRNLIPIEIALKVV 483
K T++RSI +AYV AIR+A+RFIYIENQYF+G +W GC NLIP E+ALK+
Sbjct: 1 KGRTIDRSIQDAYVHAIRRAKRFIYIENQYFLGSSFMWSNRDRDIGCANLIPAELALKIA 60
Query: 484 SKIKAKERFAVYILIPMWPEGVPTSDPVQDILHWTRETMAMMYKLIGEAIQESGQVG-HP 542
KI+A+ERFAVYI+IPMWPEG+P S+ VQ+IL+W R T+ MMYK+IG+AIQ +G HP
Sbjct: 61 EKIRARERFAVYIVIPMWPEGIPESESVQEILYWQRLTIEMMYKIIGKAIQATGLFSEHP 120
Query: 543 RDFLNFFCLATREEKKSNGEFVPPYSPHPMTQYWNAQMHRRFMVYVHSKLMIVDDVYLLI 602
D+LNFFCL REE + GE+ +P T Y+ Q +RRFM+YVHSK+MIVDD Y++I
Sbjct: 121 TDYLNFFCLGNREEVE-GGEYEATETPTQGTDYYRLQKNRRFMIYVHSKMMIVDDEYIII 179
Query: 603 GSANINQRSMDGQRDTEIAIGCYQ 626
GSANINQRSMDG RD+EIA+G YQ
Sbjct: 180 GSANINQRSMDGCRDSEIAMGAYQ 203
|
Catalytic domain, repeat 2, of plant phospholipase D (PLD, EC 3.1.4.4) and similar proteins. Plant PLDs have broad substrate specificity and can hydrolyze the terminal phosphodiester bond of several common membrane phospholipids such as phosphatidylcholine (PC), phosphatidylethanolamine (PE), phosphatidylglycerol (PG), and phosphatidylserine (PS), with the formation of phosphatidic acid and alcohols. Phosphatidic acid is an essential compound involved in signal transduction. PLDs also catalyze the transphosphatidylation of phospholipids to acceptor alcohols, by which various phospholipids can be synthesized. Most plant PLDs possess a regulatory calcium-dependent phospholipid-binding C2 domain in the N-terminus and require calcium for activity, which is unique to plant PLDs and is not present in animal or fungal PLDs. Like other PLD enzymes, the monomer of plant PLDs consists of two catalytic domains, each of which contains one copy of the conserved HKD motif (H-x-K-x(4)-D, where x represents any amino acid residue). Two HKD motifs from two domains form a single active site. Plant PLDs may utilize a common two-step ping-pong catalytic mechanism involving an enzyme-substrate intermediate to cleave phosphodiester bonds. The two histidine residues from the two HKD motifs play key roles in the catalysis. Upon substrate binding, a histidine residue from one HKD motif could function as the nucleophile, attacking the phosphodiester bond to create a covalent phosphohistidine intermediate, while the other histidine residue from the second HKD motif could serve as a general acid, stabilizing the leaving group. This subfamily includes two types of plant PLDs, alpha-type and beta-type PLDs, which are derived from different gene products and distinctly regulated. The zeta-type PLD from Arabidopsis is not included in this subfamily. Length = 208 |
| >gnl|CDD|197296 cd09200, PLDc_pPLDbeta_2, Catalytic domain, repeat 2, of plant beta-type phospholipase D | Back alignment and domain information |
|---|
Score = 276 bits (708), Expect = 1e-88
Identities = 121/204 (59%), Positives = 147/204 (72%), Gaps = 3/204 (1%)
Query: 425 KNLTVERSIHEAYVEAIRKAERFIYIENQYFIGGCQLWEKDKHCGCRNLIPIEIALKVVS 484
KN+ ++ SIH AYV+AIR A+ FIYIENQYFIG W K G NLIP+EIALK+
Sbjct: 1 KNVLIDMSIHTAYVKAIRSAQHFIYIENQYFIGSSYNWPAYKDAGADNLIPMEIALKIAE 60
Query: 485 KIKAKERFAVYILIPMWPEGVPTSDPVQDILHWTRETMAMMYKLIGEAIQESGQVG--HP 542
KI+A ERFAVYI+IPMWPEGVPT VQ+IL+W +TM MMY+ I +A+ ++G G P
Sbjct: 61 KIRAGERFAVYIVIPMWPEGVPTGAAVQEILYWQHQTMQMMYETIAKALVDTGLEGAFSP 120
Query: 543 RDFLNFFCLATREEKKSNGEFVPPYSPHPMTQYWNAQMHRRFMVYVHSKLMIVDDVYLLI 602
+D+LNF+CL RE K E P SP + +Q RRFM+YVHSK MIVDD Y++I
Sbjct: 121 QDYLNFYCLGNREMKD-GIEPSPTNSPRQNSTQGRSQKSRRFMIYVHSKGMIVDDEYVII 179
Query: 603 GSANINQRSMDGQRDTEIAIGCYQ 626
GSANINQRSMDG RDTEIA+G YQ
Sbjct: 180 GSANINQRSMDGSRDTEIAMGAYQ 203
|
Catalytic domain, repeat 2, of plant beta-type phospholipase D (PLDbeta, EC 3.1.4.4). Plant PLDbeta is a phosphatidylinositol 4,5-bisphosphate (PIP2)-dependent PLD that possesses a regulatory calcium-dependent phospholipid-binding C2 domain in the N-terminus and requires nanomolar calcium and cytosolic factors for optimal activity. The C2 domain is unique to plant PLDs and is not present in animal or fungal PLDs. Sequence analysis shows that plant PLDbeta is evolutionarily divergent from alpha-type plant PLD, and plant PLDbeta is more closely related to mammalian and yeast PLDs than to plant PLDalpha. Like other PLD enzymes, the monomer of plant PLDbeta consists of two catalytic domains, each of which contains one copy of the conserved HKD motif (H-x-K-x(4)-D, where x represents any amino acid residue). Two HKD motifs from two domains form a single active site. Plant PLDbeta may utilize a common two-step ping-pong catalytic mechanism involving an enzyme-substrate intermediate to cleave phosphodiester bonds. The two histidine residues from the two HKD motifs play key roles in the catalysis. Upon substrate binding, a histidine residue from one HKD motif could function as the nucleophile, attacking the phosphodiester bond to create a covalent phosphohistidine intermediate, while the other histidine residue from the second HKD motif could serve as a general acid, stabilizing the leaving group. Length = 211 |
| >gnl|CDD|197295 cd09199, PLDc_pPLDalpha_2, Catalytic domain, repeat 2, of plant alpha-type phospholipase D | Back alignment and domain information |
|---|
Score = 268 bits (687), Expect = 2e-85
Identities = 115/207 (55%), Positives = 147/207 (71%), Gaps = 6/207 (2%)
Query: 425 KNLTVERSIHEAYVEAIRKAERFIYIENQYFIGGCQLWE----KDKHCGCRNLIPIEIAL 480
K+ ++RSI +AY+ AIR+A+ FIYIENQYF+G W K + G +LIP E++L
Sbjct: 1 KDNIIDRSIQDAYINAIRRAKDFIYIENQYFLGSSYAWSPDGIKPQDIGALHLIPKELSL 60
Query: 481 KVVSKIKAKERFAVYILIPMWPEGVPTSDPVQDILHWTRETMAMMYKLIGEAIQESGQVG 540
K+VSKI+A ERF VY+++PMWPEG+P S VQ IL W + TM MMY I +A++ G
Sbjct: 61 KIVSKIEAGERFRVYVVVPMWPEGIPESGSVQAILDWQKRTMEMMYTDIAQALRAQGIDD 120
Query: 541 H-PRDFLNFFCLATREEKKSNGEFVPPYSPHPMTQYWNAQMHRRFMVYVHSKLMIVDDVY 599
PRD+L FFCLA RE KK GE+ P P + Y AQ RRFM+YVH+K+MIVDD Y
Sbjct: 121 EDPRDYLTFFCLANREVKK-EGEYEPAEKPEEDSDYARAQEARRFMIYVHTKMMIVDDEY 179
Query: 600 LLIGSANINQRSMDGQRDTEIAIGCYQ 626
++IGSANINQRSMDG RD+EIA+G YQ
Sbjct: 180 IIIGSANINQRSMDGARDSEIAMGAYQ 206
|
Catalytic domain, repeat 2, of plant alpha-type phospholipase D (PLDalpha, EC 3.1.4.4). Plant PLDalpha is a phosphatidylinositol 4,5-bisphosphate (PIP2)-independent PLD that possesses a regulatory calcium-dependent phospholipid-binding C2 domain in the N-terminus and require millimolar calcium for optimal activity. The C2 domain is unique to plant PLDs and is not present in animal or fungal PLDs. Like other PLD enzymes, the monomer of plant PLDalpha consists of two catalytic domains, each of which contains one copy of the conserved HKD motif (H-x-K-x(4)-D, where x represents any amino acid residue). Two HKD motifs from two domains form a single active site. Plant PLDalpha may utilize a common two-step ping-pong catalytic mechanism involving an enzyme-substrate intermediate to cleave phosphodiester bonds. The two histidine residues from the two HKD motifs play key roles in the catalysis. Upon substrate binding, a histidine residue from one HKD motif could function as the nucleophile, attacking the phosphodiester bond to create a covalent phosphohistidine intermediate, while the other histidine residue from the second HKD motif could serve as a general acid, stabilizing the leaving group. Length = 211 |
| >gnl|CDD|197237 cd09139, PLDc_pPLD_like_1, Catalytic domain, repeat 1, of plant phospholipase D and similar proteins | Back alignment and domain information |
|---|
Score = 251 bits (644), Expect = 1e-79
Identities = 95/172 (55%), Positives = 118/172 (68%), Gaps = 11/172 (6%)
Query: 160 PGKLWEDVYKAIEGAKHLIYIAGWSLNPKMVLVRDSQTEIAHARGVQLGELLKHKAEEGV 219
P +LWED+Y AI AKHLIYIAGWS+NP++ L+RDS+ E LGELLK KAEEGV
Sbjct: 7 PRRLWEDMYDAICNAKHLIYIAGWSVNPEISLIRDSEREDPPKYSPTLGELLKRKAEEGV 66
Query: 220 AVRIMLWDDETSLPIIKNKGVMRTHDEDAFAYFKHTKVICKLCPRLHHK---------FP 270
AV ++LWDD+T KN GVM THDE+ +F++TKV C LCPR
Sbjct: 67 AVLLLLWDDKTV-NGFKNDGVMATHDEETRNFFRNTKVNCLLCPRNGDAGNTYVEQIEVS 125
Query: 271 TLFAHHQKTITVDARAQDSIFDREIMSFVGGLDLCDGRYDTEKHSLFQTLNS 322
T F HHQKT+ VDA A + REI++FVGG+DLCDGRYD +HSLF+TL++
Sbjct: 126 TAFTHHQKTVIVDAPAPNGE-RREIVAFVGGIDLCDGRYDNPEHSLFRTLDT 176
|
Catalytic domain, repeat 1, of plant phospholipase D (PLD, EC 3.1.4.4) and similar proteins. Plant PLDs have broad substrate specificity and can hydrolyze the terminal phosphodiester bond of several common membrane phospholipids such as phosphatidylcholine (PC), phosphatidylethanolamine (PE), phosphatidylglycerol (PG), and phosphatidylserine (PS), with the formation of phosphatidic acid and alcohols. Phosphatidic acid is an essential compound involved in signal transduction. PLDs also catalyze the transphosphatidylation of phospholipids to acceptor alcohols, by which various phospholipids can be synthesized. Most plant PLDs possess a regulatory calcium-dependent phospholipid-binding C2 domain in the N-terminus and require calcium for activity, which is unique to plant PLDs and is not present in animal or fungal PLDs. Like other PLD enzymes, the monomer of plant PLDs consists of two catalytic domains, each of which contains one copy of the conserved HKD motif (H-x-K-x(4)-D, where x represents any amino acid residue). Two HKD motifs from two domains form a single active site. Plant PLDs may utilize a common two-step ping-pong catalytic mechanism involving an enzyme-substrate intermediate to cleave phosphodiester bonds. The two histidine residues from the two HKD motifs play key roles in the catalysis. Upon substrate binding, a histidine residue from one HKD motif could function as the nucleophile, attacking the phosphodiester bond to create a covalent phosphohistidine intermediate, while the other histidine residue from the second HKD motif could serve as a general acid, stabilizing the leaving group. This subfamily includes two types of plant PLDs, alpha-type and beta-type PLDs, which are derived from different gene products and distinctly regulated. The zeta-type PLD from Arabidopsis is not included in this subfamily. Length = 176 |
| >gnl|CDD|197293 cd09197, PLDc_pPLDalpha_1, Catalytic domain, repeat 1, of plant alpha-type phospholipase D | Back alignment and domain information |
|---|
Score = 187 bits (477), Expect = 1e-55
Identities = 85/173 (49%), Positives = 110/173 (63%), Gaps = 11/173 (6%)
Query: 160 PGKLWEDVYKAIEGAKHLIYIAGWSLNPKMVLVRDSQTEIAHARGVQLGELLKHKAEEGV 219
P + WEDV+ AI AKHLIYI GWS+ ++VLVRDS+ + LGELLK KA EGV
Sbjct: 7 PTRCWEDVFDAIMNAKHLIYITGWSVYCEIVLVRDSRRP-KPGGDLTLGELLKKKASEGV 65
Query: 220 AVRIMLWDDETSLPIIKNKGVMRTHDEDAFAYFKHTKVICKLCPR---------LHHKFP 270
V +++WDD TS+ +K G+M THDE+ A+F+ + V C LCPR +
Sbjct: 66 RVLMLVWDDRTSVEFLKKDGLMATHDEETEAFFQDSDVHCFLCPRNPDDGGSKVQGLQIS 125
Query: 271 TLFAHHQKTITVDARAQDSIFD-REIMSFVGGLDLCDGRYDTEKHSLFQTLNS 322
T+F HHQK + VD+ S R I+SFVGG+DLCDGRYD HSLF+TL+
Sbjct: 126 TMFTHHQKIVVVDSPMPGSDSGRRRIVSFVGGIDLCDGRYDNPFHSLFRTLDD 178
|
Catalytic domain, repeat 1, of plant alpha-type phospholipase D (PLDalpha, EC 3.1.4.4). Plant PLDalpha is a phosphatidylinositol 4,5-bisphosphate (PIP2)-independent PLD that possesses a regulatory calcium-dependent phospholipid-binding C2 domain in the N-terminus and require millimolar calcium for optimal activity. The C2 domain is unique to plant PLDs and is not present in animal or fungal PLDs. Like other PLD enzymes, the monomer of plant PLDalpha consists of two catalytic domains, each of which contains one copy of the conserved HKD motif (H-x-K-x(4)-D, where x represents any amino acid residue). Two HKD motifs from two domains form a single active site. Plant PLDalpha may utilize a common two-step ping-pong catalytic mechanism involving an enzyme-substrate intermediate to cleave phosphodiester bonds. The two histidine residues from the two HKD motifs play key roles in the catalysis. Upon substrate binding, a histidine residue from one HKD motif could function as the nucleophile, attacking the phosphodiester bond to create a covalent phosphohistidine intermediate, while the other histidine residue from the second HKD motif could serve as a general acid, stabilizing the leaving group. Length = 178 |
| >gnl|CDD|197294 cd09198, PLDc_pPLDbeta_1, Catalytic domain, repeat 1, of plant beta-type phospholipase D | Back alignment and domain information |
|---|
Score = 177 bits (449), Expect = 1e-51
Identities = 82/175 (46%), Positives = 108/175 (61%), Gaps = 13/175 (7%)
Query: 160 PGKLWEDVYKAIEGAKHLIYIAGWSLNPKMVLVRDSQTEIAHARGVQLGELLKHKAEEGV 219
GK WED+ AI A+ LIYI GWS+ K+ L+RD + + LGELLK K++EGV
Sbjct: 7 HGKCWEDMCDAIREARRLIYITGWSVYHKVKLIRDKLRPVPPGGELTLGELLKSKSQEGV 66
Query: 220 AVRIMLWDDETS--LPIIKNKGVMRTHDEDAFAYFKHTKVICKLCPRLHHK--------- 268
V +++WDD+TS + K GVM THDE+ +FKH+ V C L PR K
Sbjct: 67 RVLLLVWDDKTSHSILGYKTDGVMATHDEETKRFFKHSSVQCVLAPRYAGKKHSWFKQQV 126
Query: 269 FPTLFAHHQKTITVDARAQDSIFDREIMSFVGGLDLCDGRYDTEKHSLFQTLNSE 323
TL+ HHQK + VDA A + R+I +F+GGLDLCDGRYDT +H LF+TL +
Sbjct: 127 VGTLYTHHQKNVIVDADAGGN--RRKITAFIGGLDLCDGRYDTPQHPLFRTLETI 179
|
Catalytic domain, repeat 1, of plant beta-type phospholipase D (PLDbeta, EC 3.1.4.4). Plant PLDbeta is a phosphatidylinositol 4,5-bisphosphate (PIP2)-dependent PLD that possesses a regulatory calcium-dependent phospholipid-binding C2 domain in the N-terminus and requires nanomolar calcium and cytosolic factors for optimal activity. The C2 domain is unique to plant PLDs and is not present in animal or fungal PLDs. Sequence analysis shows that plant PLDbeta is evolutionarily divergent from alpha-type plant PLD, and plant PLDbeta is more closely related to mammalian and yeast PLDs than to plant PLDalpha. Like other PLD enzymes, the monomer of plant PLDbeta consists of two catalytic domains, each of which contains one copy of the conserved HKD motif (H-x-K-x(4)-D, where x represents any amino acid residue). Two HKD motifs from two domains form a single active site. Plant PLDbeta may utilize a common two-step ping-pong catalytic mechanism involving an enzyme-substrate intermediate to cleave phosphodiester bonds. The two histidine residues from the two HKD motifs play key roles in the catalysis. Upon substrate binding, a histidine residue from one HKD motif could function as the nucleophile, attacking the phosphodiester bond to create a covalent phosphohistidine intermediate, while the other histidine residue from the second HKD motif could serve as a general acid, stabilizing the leaving group. Length = 180 |
| >gnl|CDD|197239 cd09141, PLDc_vPLD1_2_yPLD_like_2, Catalytic domain, repeat 2, of vertebrate phospholipases, PLD1 and PLD2, yeast PLDs, and similar proteins | Back alignment and domain information |
|---|
Score = 170 bits (432), Expect = 5e-49
Identities = 69/199 (34%), Positives = 101/199 (50%), Gaps = 31/199 (15%)
Query: 429 VERSIHEAYVEAIRKAERFIYIENQYFIGGCQLWEKDKHCGCRNLIPIEIALKVVSKIKA 488
E SI AY++ I AE FIYIENQ+FI +N I + +++ K
Sbjct: 5 TEDSIQNAYLDLIENAEHFIYIENQFFISST-----GGEDPVKNRIGEALVDRIIRAHKE 59
Query: 489 KERFAVYILIPMWP--EG---VPTSDPVQDILHWTRETMAMMYKLIGEAIQESGQVGHPR 543
E+F VYI++P+ P EG P ++ I+HW +++ + E +++ V P
Sbjct: 60 GEKFRVYIVLPLLPGFEGDLDDPGGSSIRAIMHWQYQSICRGEHSLLERLKKEEGV-DPE 118
Query: 544 DFLNFFCLATREEKKSNGEFVPPYSPHPMTQYWNAQMHRRFMVYVHSKLMIVDDVYLLIG 603
+++F L T + G V T+ +YVHSKLMIVDD ++IG
Sbjct: 119 QYISFLSLRTHGKL--GGRPV--------TE----------QIYVHSKLMIVDDRIVIIG 158
Query: 604 SANINQRSMDGQRDTEIAI 622
SANIN RSM G RD+EIA+
Sbjct: 159 SANINDRSMLGDRDSEIAV 177
|
Catalytic domain, repeat 2, of vertebrate phospholipases D (PLD1 and PLD2), yeast phospholipase D (PLD SPO14/PLD1), and other similar eukaryotic proteins. These PLD enzymes play a pivotal role in transmembrane signaling and cellular regulation. They hydrolyze the terminal phosphodiester bond of phospholipids resulting in the formation of phosphatidic acid and alcohols. Phosphatidic acid is an essential compound involved in signal transduction. PLDs also catalyze the transphosphatidylation of phospholipids to acceptor alcohols, by which various phospholipids can be synthesized. The vertebrate PLD1 and PLD2 are membrane associated phosphatidylinositol 4,5-bisphosphate (PIP2)-dependent enzymes that selectively hydrolyze phosphatidylcholine (PC). Protein cofactors and calcium may be required for their activation. Yeast SPO14/PLD1 is a calcium-independent PLD, which needs PIP2 for its activity. Instead of the regulatory calcium-dependent phospholipid-binding C2 domain in plants, most mammalian and yeast PLDs have adjacent Phox (PX) and the Pleckstrin homology (PH) domains at the N-terminus, which have been shown to mediate membrane targeting of the protein and are closely linked to polyphosphoinositide signaling. The PX and PH domains are also present in zeta-type PLD from Arabidopsis, which is more closely related to vertebrate PLDs than to other plant PLD types. In addition, this subfamily also includes some related proteins which have either PX-like or PH domains in their N-termini. Like other members of the PLD superfamily, the monomer of mammalian and yeast PLDs consists of two catalytic domains, each containing one copy of the conserved HKD motif (H-x-K-x(4)-D, where x represents any amino acid residue). Two HKD motifs from the two domains form a single active site. These PLDs utilize a common two-step ping-pong catalytic mechanism involving an enzyme-substrate intermediate to cleave phosphodiester bonds. The two histidine residues from the two HKD motifs play key roles in the catalysis. Upon substrate binding, a histidine residue from one HKD motif could function as the nucleophile, attacking the phosphodiester bond to create a covalent phosphohistidine intermediate, while the other histidine residue from the second HKD motif could serve as a general acid, stabilizing the leaving group. Length = 183 |
| >gnl|CDD|197204 cd09105, PLDc_vPLD1_2_like_2, Catalytic domain, repeat 2, of vertebrate phospholipases, PLD1 and PLD2, and similar proteins | Back alignment and domain information |
|---|
Score = 126 bits (318), Expect = 8e-34
Identities = 49/196 (25%), Positives = 75/196 (38%), Gaps = 56/196 (28%)
Query: 428 TVERSIHEAYVEAIRKAERFIYIENQYFIGGCQLWEKDKHCGCRNLIPIEIALKVVSKIK 487
+ E I +AY++AIR A R+IYIE+QY E+ + +K
Sbjct: 4 SGEFEIADAYLKAIRNARRYIYIEDQYL------------------WSPELLDALAEALK 45
Query: 488 AKERFAVYILIPMWPEGVPTSDPVQDILHWTRETMAMMYKLIGEAIQESGQVGHPRDFLN 547
A V +++P P+ V + L A+ R +
Sbjct: 46 ANPGLRVVLVLPALPDAVAF------------GADDGLDALALLALLLLADAAPDR--VA 91
Query: 548 FFCLATREEKKSNGEFVPPYSPHPMTQYWNAQMHRRFMVYVHSKLMIVDDVYLLIGSANI 607
F LAT + +YVHSK++IVDD + +GSAN+
Sbjct: 92 VFSLATHRR----------------------GLLGGPPIYVHSKVVIVDDEWATVGSANL 129
Query: 608 NQRSMDGQRDTEIAIG 623
N+RSM DTE+ +
Sbjct: 130 NRRSMT--WDTELNLA 143
|
Catalytic domain, repeat 2, of phospholipase D (PLD, EC 3.1.4.4) found in yeast, plants, and vertebrates, and their bacterial homologs. PLDs are involved in signal transduction, vesicle formation, protein transport, and mitosis by participating in phospholipid metabolism. They hydrolyze the terminal phosphodiester bond of phospholipids resulting in the formation of phosphatidic acid and alcohols. Phosphatidic acid is an essential compound involved in signal transduction. PLDs also catalyze the transphosphatidylation of phospholipids to acceptor alcohols, by which various phospholipids can be synthesized. Both prokaryotic and eukaryotic PLDs have two HKD motifs (H-x-K-x(4)-D, where x represents any amino acid residue) that characterizes the phospholipase D (PLD) superfamily. PLDs are active as bi-lobed monomers. Each monomer contains two domains, each of which carries one copy of the HKD motif. Two HKD motifs from two domains form a single active site. PLDs utilize a common two-step ping-pong catalytic mechanism involving an enzyme-substrate intermediate to cleave phosphodiester bonds. The two histidine residues from the two HKD motifs play key roles in the catalysis. Upon substrate binding, a histidine residue from one HKD motif could function as the nucleophile, attacking the phosphodiester bond to create a covalent phosphohistidine intermediate, while the other histidine residue from the second HKD motif could serve as a general acid, stabilizing the leaving group. Length = 146 |
| >gnl|CDD|193000 pfam12357, PLD_C, Phospholipase D C terminal | Back alignment and domain information |
|---|
Score = 109 bits (276), Expect = 5e-29
Identities = 34/75 (45%), Positives = 46/75 (61%), Gaps = 2/75 (2%)
Query: 654 EGLFREPESLECVQKICSIGDEMWNIYSGEEVVDMDGVHLVTYPVNVTPDGLIEDLVDEG 713
E F EPESLECV+++ I ++ W +Y+ EEV D+ G HL+ YPV V DG + +L
Sbjct: 2 EDCFLEPESLECVRRVNEIAEKNWKLYASEEVTDLPG-HLLRYPVGVDRDGKVTEL-PGC 59
Query: 714 GNFPDTKTPVKGKRS 728
FPDT V G +S
Sbjct: 60 EFFPDTGAKVLGAKS 74
|
This domain family is found in eukaryotes, and is approximately 70 amino acids in length. The family is found in association with pfam00168, pfam00614. There is a conserved FPD sequence motif. This family is the C terminal of phospholipase D. PLD is a major plant lipid-degrading enzyme which is involved in signal transduction. Length = 74 |
| >gnl|CDD|215467 PLN02866, PLN02866, phospholipase D | Back alignment and domain information |
|---|
Score = 123 bits (311), Expect = 6e-29
Identities = 94/276 (34%), Positives = 124/276 (44%), Gaps = 72/276 (26%)
Query: 408 KVQVFRSIDHVSA--SQLAKNLTVERSIHEAYVEAIRKAERFIYIENQYFIGGCQLWEKD 465
+ QV RS+ SA SQ VE SIH AY I KAE FIYIENQ+FI G D
Sbjct: 711 RCQVIRSVSQWSAGTSQ------VEESIHAAYCSLIEKAEHFIYIENQFFISGL---SGD 761
Query: 466 KHCGCRNLIPIEIALKVVSKIKAKERFAVYILIPMWPE---GVPTSDP--VQDILHWTRE 520
+N + + +++ K K+ F V I+IP+ P GV V+ I+HW
Sbjct: 762 DTI--QNRVLEALYRRILRAHKEKKCFRVIIVIPLLPGFQGGVDDGGAASVRAIMHWQYR 819
Query: 521 TMAM--------MYKLIGEAIQESGQVGHPRDFLNFFCLATREEKKSNGEFVPPYSPHPM 572
T+ +Y L+G D+++F+ L G P
Sbjct: 820 TICRGKNSILHNLYDLLGPKTH---------DYISFYGLRAYGRLFEGG-------PLAT 863
Query: 573 TQYWNAQMHRRFMVYVHSKLMIVDDVYLLIGSANINQRSMDGQRDTEIAIGCYQLPKNDD 632
+Q +YVHSK+MIVDD LIGSANIN RS+ G RD+EI + +D
Sbjct: 864 SQ-----------IYVHSKIMIVDDRAALIGSANINDRSLLGSRDSEIGV------VIED 906
Query: 633 QNSEDIS-----------AY--RLSLWYEHTGLAEG 655
+ D S A+ RLSLW EH GL G
Sbjct: 907 KEFVDSSMNGKPWKAGKFAHSLRLSLWSEHLGLRAG 942
|
Length = 1068 |
| >gnl|CDD|197203 cd09104, PLDc_vPLD1_2_like_1, Catalytic domain, repeat 1, of vertebrate phospholipases, PLD1 and PLD2, and similar proteins | Back alignment and domain information |
|---|
Score = 105 bits (265), Expect = 1e-26
Identities = 48/156 (30%), Positives = 77/156 (49%), Gaps = 23/156 (14%)
Query: 164 WEDVYKAIEGAKHLIYIAGWSLNPKMVLVRDSQTEIAHARGVQLGELLKHKAE-EGVAVR 222
++D+ +A++GA+H +YI GW ++ ++L A +LG+ L+ A GV VR
Sbjct: 11 FDDLAEALDGARHSVYITGWQVSADIILAPLL------AGPDRLGDTLRTLAARRGVDVR 64
Query: 223 IMLWDDETS-LPIIKNKGVMRTHDEDAFAYFKHTKVICKLCPRLHHKFPTLFAHHQKTIT 281
++LWD L +K + + + T + L RL TLF+HHQK +
Sbjct: 65 VLLWDSPLLVLLGPDDK----DLNLGFPTFLRLTTALLVLDLRLRR--HTLFSHHQKLV- 117
Query: 282 VDARAQDSIFDREIMSFVGGLDLCDGRYDTEKHSLF 317
+ D ++FVGG+DL GRYD H+L
Sbjct: 118 --------VIDSAEVAFVGGIDLAYGRYDDPDHALA 145
|
Catalytic domain, repeat 1, of phospholipase D (PLD, EC 3.1.4.4) found in yeast, plants, and vertebrates, and their bacterial homologs. PLDs are involved in signal transduction, vesicle formation, protein transport, and mitosis by participating in phospholipid metabolism. They hydrolyze the terminal phosphodiester bond of phospholipids resulting in the formation of phosphatidic acid and alcohols. Phosphatidic acid is an essential compound involved in signal transduction. PLDs also catalyze the transphosphatidylation of phospholipids to acceptor alcohols, by which various phospholipids can be synthesized. Both prokaryotic and eukaryotic PLDs have two HKD motifs (H-x-K-x(4)-D, where x represents any amino acid residue) that characterizes the phospholipase D (PLD) superfamily. PLDs are active as bi-lobed monomers. Each monomer contains two domains, each of which carries one copy of the HKD motif. Two HKD motifs from two domains form a single active site. PLDs utilize a common two-step ping-pong catalytic mechanism involving an enzyme-substrate intermediate to cleave phosphodiester bonds. The two histidine residues from the two HKD motifs play key roles in the catalysis. Upon substrate binding, a histidine residue from one HKD motif could function as the nucleophile, attacking the phosphodiester bond to create a covalent phosphohistidine intermediate, while the other histidine residue from the second HKD motif could serve as a general acid, stabilizing the leaving group. Length = 147 |
| >gnl|CDD|197236 cd09138, PLDc_vPLD1_2_yPLD_like_1, Catalytic domain, repeat 1, of vertebrate phospholipases, PLD1 and PLD2, yeast PLDs, and similar proteins | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 4e-26
Identities = 54/162 (33%), Positives = 76/162 (46%), Gaps = 38/162 (23%)
Query: 165 EDVYKAIEGAKHLIYIAGWSLNPKMVLVRDSQTEIAHARGVQLGELLKHKAEEGVAVRIM 224
V AIE AK I+I W L+P++ L R A +L LLK KAEEGV + I+
Sbjct: 12 WAVADAIENAKEEIFITDWWLSPELYLRRP----PAGNERWRLDRLLKRKAEEGVKIYIL 67
Query: 225 LWDDETSLPIIKNKGVMRTHDEDAFAYFKHTKVICKLCPR----LHH-----KFPTLFAH 275
L+ E L + N K+TK + L H + P L++H
Sbjct: 68 LYK-EVELALTINS--------------KYTKRTLENLHPNIKVLRHPDHLPQGPLLWSH 112
Query: 276 HQKTITVDARAQDSIFDREIMSFVGGLDLCDGRYDTEKHSLF 317
H+K + +D + ++FVGGLDLC GR+DT +H L
Sbjct: 113 HEKIVVID----------QSIAFVGGLDLCYGRWDTHQHPLT 144
|
Catalytic domain, repeat 1, of vertebrate phospholipases D (PLD1 and PLD2), yeast phospholipase D (PLD SPO14/PLD1), and other similar eukaryotic proteins. These PLD enzymes play a pivotal role in transmembrane signaling and cellular regulation. They hydrolyze the terminal phosphodiester bond of phospholipids resulting in the formation of phosphatidic acid and alcohols. Phosphatidic acid is an essential compound involved in signal transduction. PLDs also catalyze the transphosphatidylation of phospholipids to acceptor alcohols, by which various phospholipids can be synthesized. The vertebrate PLD1 and PLD2 are membrane associated phosphatidylinositol 4,5-bisphosphate (PIP2)-dependent enzymes that selectively hydrolyze phosphatidylcholine (PC). Protein cofactors and calcium may be required for their activation. Yeast SPO14/PLD1 is a calcium-independent PLD, which needs PIP2 for its activity. Instead of the regulatory calcium-dependent phospholipid-binding C2 domain in plants, most mammalian and yeast PLDs have adjacent Phox (PX) and the Pleckstrin homology (PH) domains at the N-terminus, which have been shown to mediate membrane targeting of the protein and are closely linked to polyphosphoinositide signaling. The PX and PH domains are also present in zeta-type PLD from Arabidopsis, which is more closely related to vertebrate PLDs than to other plant PLD types. In addition, this subfamily also includes some related proteins which have either PX-like or PH domains in their N-termini. Like other members of the PLD superfamily, the monomer of mammalian and yeast PLDs consists of two catalytic domains, each containing one copy of the conserved HKD motif (H-x-K-x(4)-D, where x represents any amino acid residue). Two HKD motifs from the two domains form a single active site. These PLDs utilize a common two-step ping-pong catalytic mechanism involving an enzyme-substrate intermediate to cleave phosphodiester bonds. The two histidine residues from the two HKD motifs play key roles in the catalysis. Upon substrate binding, a histidine residue from one HKD motif could function as the nucleophile, attacking the phosphodiester bond to create a covalent phosphohistidine intermediate, while the other histidine residue from the second HKD motif could serve as a general acid, stabilizing the leaving group. Length = 146 |
| >gnl|CDD|197302 cd09844, PLDc_vPLD1_2, Catalytic domain, repeat 2, of vertebrate phospholipase D1 | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 2e-25
Identities = 70/201 (34%), Positives = 105/201 (52%), Gaps = 38/201 (18%)
Query: 430 ERSIHEAYVEAIRKAERFIYIENQYFIGGCQLWEKDKHCGCRNLIPIEIALKVVSKIKAK 489
E SIH AYV I ++ +IYIENQ+FI C DK N I IA +++ +
Sbjct: 6 EESIHAAYVSVIENSKHYIYIENQFFIS-CA---DDKVV--FNKIGDAIAQRILKAHREN 59
Query: 490 ERFAVYILIPMWP--EGVPTS---DPVQDILHWTRETMAM-MYKLIGEAIQESGQVGHPR 543
+R+ VY++IP+ P EG ++ + +Q I+H+ TM + +IG+ E G
Sbjct: 60 KRYRVYVVIPLLPGFEGDISTGGGNALQAIMHFNYRTMCRGEHSIIGQLKAEMGD----- 114
Query: 544 DFLNF--FCLATREEKKSNGEFVPPYSPHPMTQYWNAQMHRRFMVYVHSKLMIVDDVYLL 601
++N+ FC R + G V ++YVHSKL+I DD ++
Sbjct: 115 QWINYISFC-GLRTHAELEGNLVTE------------------LIYVHSKLLIADDNTVI 155
Query: 602 IGSANINQRSMDGQRDTEIAI 622
IGSANIN RSM G+RD+E+A+
Sbjct: 156 IGSANINDRSMLGKRDSEMAV 176
|
Catalytic domain, repeat 2, of vertebrate phospholipase D1 (PLD1). PLDs play a pivotal role in transmembrane signaling and cellular regulation. They hydrolyze the terminal phosphodiester bond of phospholipids resulting in the formation of phosphatidic acid and alcohols. Phosphatidic acid is an essential compound involved in signal transduction. PLDs also catalyze the transphosphatidylation of phospholipids to acceptor alcohols, by which various phospholipids can be synthesized. Vertebrate PLD1 is a membrane associated phosphatidylinositol 4,5-bisphosphate (PIP2)-dependent enzyme that selectively hydrolyzes phosphatidylcholine (PC). Protein cofactors and calcium might be required for its activation. Most vertebrate PLDs have adjacent Phox (PX) and the Pleckstrin homology (PH) domains at their N-terminus, which have been shown to mediate membrane targeting of the protein and are closely linked to polyphosphoinositide signaling. Like other members of the PLD superfamily, the monomer of vertebrate PLDs consists of two catalytic domains, each of which contains one copy of the conserved HKD motif (H-x-K-x(4)-D, where x represents any amino acid residue). Two HKD motifs from two domains form a single active site. These PLDs utilize a common two-step ping-pong catalytic mechanism involving an enzyme-substrate intermediate to cleave phosphodiester bonds. The two histidine residues from the two HKD motifs play key roles in the catalysis. Upon substrate binding, a histidine residue from one HKD motif could function as the nucleophile, attacking the phosphodiester bond to create a covalent phosphohistidine intermediate, while the other histidine residue from the second HKD motif could serve as a general acid, stabilizing the leaving group. Length = 182 |
| >gnl|CDD|197303 cd09845, PLDc_vPLD2_2, Catalytic domain, repeat 2, of vertebrate phospholipase D2 | Back alignment and domain information |
|---|
Score = 99 bits (249), Expect = 3e-24
Identities = 60/205 (29%), Positives = 102/205 (49%), Gaps = 42/205 (20%)
Query: 428 TVERSIHEAYVEAIRKAERFIYIENQYFIGGCQLWEKDKHCGCRNLIPIEIALKVVSKIK 487
T+E SI AY+ I ++ ++Y+ENQ+FI + N I I +++
Sbjct: 4 TLENSILNAYLHTIENSQHYLYLENQFFISCAD--GRT----VLNKIGDAIVKRILKAHS 57
Query: 488 AKERFAVYILIPMWP--EG---VPTSDPVQDILHWTRETM-----AMMYKLIGEAIQESG 537
F V+++IP+ P EG + +Q ILH+T T+ +++ +L EA+ +
Sbjct: 58 QGWCFRVFVVIPLLPGFEGDISTGGGNSIQAILHFTYRTICRGEYSILSRL-KEAMGTAW 116
Query: 538 QVGHPRDFLNFFCLATREEKKSNGEFVPPYSPHPMTQYWNAQMHRRFMVYVHSKLMIVDD 597
D+++ L T E P+T+ ++Y+HSK++I DD
Sbjct: 117 -----TDYISICGLRTHGELGG----------SPVTE----------LIYIHSKVLIADD 151
Query: 598 VYLLIGSANINQRSMDGQRDTEIAI 622
++IGSANIN RSM G+RD+E+A+
Sbjct: 152 RTVIIGSANINDRSMLGKRDSELAV 176
|
Catalytic domain, repeat 2, of vertebrate phospholipase D2 (PLD2). PLDs play a pivotal role in transmembrane signaling and cellular regulation. They hydrolyze the terminal phosphodiester bond of phospholipids with the formation of phosphatidic acid and alcohols. Phosphatidic acid is an essential compound involved in signal transduction. They also catalyze a transphosphatidylation of phospholipids to acceptor alcohols, by which various phospholipids can be synthesized. Vertebrate PLD2 is a membrane associated phosphatidylinositol 4,5-bisphosphate (PIP2)-dependent enzyme that selectively hydrolyzes phosphatidylcholine (PC). Protein cofactors and calcium might be required for its activation. Most vertebrate PLDs have adjacent Phox (PX) and the Pleckstrin homology (PH) domains at their N-terminus, which have been shown to mediate membrane targeting of the protein and are closely linked to polyphosphoinositide signaling. Like other members of the PLD superfamily, the monomer of vertebrate PLDs consists of two catalytic domains, each of which contains one copy of the conserved HKD motif (H-x-K-x(4)-D, where x represents any amino acid residue). Two HKD motifs from two domains form a single active site. These PLDs utilize a common two-step ping-pong catalytic mechanism involving an enzyme-substrate intermediate to cleave phosphodiester bonds. The two histidine residues from the two HKD motifs play key roles in the catalysis. Upon substrate binding, a histidine residue from one HKD motif could function as the nucleophile, attacking the phosphodiester bond to create a covalent phosphohistidine intermediate, while the other histidine residue from the second HKD motif could serve as a general acid, stabilizing the leaving group. Length = 182 |
| >gnl|CDD|215467 PLN02866, PLN02866, phospholipase D | Back alignment and domain information |
|---|
Score = 89.1 bits (221), Expect = 4e-18
Identities = 83/275 (30%), Positives = 119/275 (43%), Gaps = 65/275 (23%)
Query: 124 GLRNASFPQRSNCHVKLYHDAHHSSSFEPPYDLC--GSPGKLWED-------VYKAIEGA 174
GLR P CH H SF PP L GS + + D + AIE A
Sbjct: 307 GLR----PPEGWCH------PHRFGSFAPPRGLTEDGSQAQWFIDGHAAFEAIASAIENA 356
Query: 175 KHLIYIAGWSLNPKMVLVRDSQTEIAHARGVQLGELLKHKAEEGVAVRIMLWDDETSLPI 234
K I+I GW L P++ L R H +L LL+ KA++GV + I+L+ E +L +
Sbjct: 357 KSEIFITGWWLCPELYLRRPFH---DHESS-RLDSLLEAKAKQGVQIYILLYK-EVALAL 411
Query: 235 IKN-----KGVMRTHDEDAFAYFKHTKVICKLCPRLHHKFPT---LFAHHQKTITVDARA 286
N + ++ H ++ KV+ R F + L++HH+K + VD +
Sbjct: 412 KINSVYSKRRLLGIH--------ENVKVL-----RYPDHFSSGVYLWSHHEKLVIVDYQ- 457
Query: 287 QDSIFDREIMSFVGGLDLCDGRYDTEKHSLFQTLNSESHCFDFYQI---------NIAGA 337
+ F+GGLDLC GRYDT +H + D+Y +
Sbjct: 458 ---------ICFIGGLDLCFGRYDTPEHRVGDCPPVIWPGKDYYNPRESEPNSWEDTMKD 508
Query: 338 SLHKGG-PREPWHDVHACITGEAAWDVLTNFEQRW 371
L + PR PWHDVH + G DV +F QRW
Sbjct: 509 ELDRRKYPRMPWHDVHCALWGPPCRDVARHFVQRW 543
|
Length = 1068 |
| >gnl|CDD|197238 cd09140, PLDc_vPLD1_2_like_bac_1, Catalytic domain, repeat 1, of uncharacterized bacterial proteins with similarity to vertebrate phospholipases, PLD1 and PLD2 | Back alignment and domain information |
|---|
Score = 77.2 bits (191), Expect = 1e-16
Identities = 37/154 (24%), Positives = 64/154 (41%), Gaps = 32/154 (20%)
Query: 167 VYKAIEGAKHLIYIAGWSLNPKMVLVRDSQTEIAHARGVQLGELLKHKAEE--GVAVRIM 224
+ +A+ A+ I I GW + ++ L R + +LG+ L AE + +RI+
Sbjct: 14 LREALLRARRSILIVGWDFDSRIRLRRGGDDD---GGPERLGDFLNWLAERRPDLDIRIL 70
Query: 225 LWDDETSLPIIKNKGVMRTHDEDAFAYFKHTKVICKLCPRLHHKF----PTLFAHHQKTI 280
WD ++ + H PR+H + P +HHQK +
Sbjct: 71 KWD----FAMLYALERELLPL-FLLRWKTH--------PRIHFRLDGHHPLGASHHQKIV 117
Query: 281 TVDARAQDSIFDREIMSFVGGLDLCDGRYDTEKH 314
+D D++ +F GG+DL R+DT +H
Sbjct: 118 VID----DAL------AFCGGIDLTVDRWDTREH 141
|
Catalytic domain, repeat 1, of uncharacterized bacterial counterparts of vertebrate, yeast and plant phospholipase D (PLD, EC 3.1.4.4). PLDs hydrolyze the terminal phosphodiester bond of phospholipids with the formation of phosphatidic acid and alcohols. They also catalyze the transphosphatidylation of phospholipids to acceptor alcohols, by which various phospholipids can be synthesized. Instead of the regulatory C2 (calcium-activated lipid binding) domain in plants and the adjacent Phox (PX) and the Pleckstrin homology (PH) N-terminal domains in most mammalian and yeast PLDs, many members in this subfamily contain a SNARE associated C-terminal domain, whose functional role is unclear. Like other PLD enzymes, members in this subfamily contain two copies of the conserved HKD motif (H-x-K-x(4)-D, where x represents any amino acid residue), that may play an important role in the catalysis. Length = 146 |
| >gnl|CDD|197241 cd09143, PLDc_vPLD1_2_like_bac_2, Catalytic domain, repeat 2, of uncharacterized bacterial proteins with similarity to vertebrate phospholipases, PLD1 and PLD2 | Back alignment and domain information |
|---|
Score = 64.9 bits (159), Expect = 2e-12
Identities = 20/28 (71%), Positives = 23/28 (82%)
Query: 585 MVYVHSKLMIVDDVYLLIGSANINQRSM 612
+YVHSKLMIVDD L +GSAN+N RSM
Sbjct: 103 PIYVHSKLMIVDDRLLRVGSANLNNRSM 130
|
Catalytic domain, repeat 2, of uncharacterized bacterial counterparts of vertebrate, yeast and plant phospholipase D (PLD, EC 3.1.4.4). PLDs hydrolyze the terminal phosphodiester bond of phospholipids with the formation of phosphatidic acid and alcohols. They also catalyze the transphosphatidylation of phospholipids to acceptor alcohols, by which various phospholipids can be synthesized. Instead of the regulatory C2 (calcium-activated lipid binding) domain in plants and the adjacent Phox (PX) and the Pleckstrin homology (PH) N-terminal domains in most mammalian and yeast PLDs, many members in this subfamily contain a SNARE associated C-terminal domain, whose functional role is unclear. Like other PLD enzymes, members in this subfamily contain two copies of the conserved HKD motif (H-x-K-x(4)-D, where x represents any amino acid residue), that may play an important role in the catalysis. Length = 142 |
| >gnl|CDD|224419 COG1502, Cls, Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 69.5 bits (170), Expect = 2e-12
Identities = 62/305 (20%), Positives = 93/305 (30%), Gaps = 90/305 (29%)
Query: 167 VYKAIEGAKHLIYIAGWSLNPKMVLVRDSQTEIAH--ARGVQLGELLKHKAEEGVAVRIM 224
+ + IE AK IY+ Q I G ++ + L A+ GV VR++
Sbjct: 75 LIELIEAAKKSIYL---------------QYYIWQDDELGREILDALIEAAKRGVEVRLL 119
Query: 225 LWD-------DETSLPIIKNKGVMRTHDEDAFAYFKHTKVIC-KLCPRLHHKFPTLFAHH 276
L D ++ L ++K G+ F + +L RLH K
Sbjct: 120 LDDIGSTRGLLKSLLALLKRAGIEEVR---LFNPASPRPLRFRRLNRRLHRKIV------ 170
Query: 277 QKTITVDARAQDSIFDREIMSFVGGLDLCDGRYDTEKHSLFQTLNSESHCFDFYQINIAG 336
+ D ++ +FVGG NI
Sbjct: 171 -------------VIDGKV-AFVGG------------------------------ANIGD 186
Query: 337 ASLHKGGPREPWHDVHACITGEAAWDVLTNFEQRWTKQCDPSLLVPISSIPNLGHKSNII 396
HK W D+H ITG A D+ F Q W +L S + +
Sbjct: 187 EYFHKDKGLGYWRDLHVRITGPAVADLARLFIQDW------NLESGSSKPLLALVRPPLQ 240
Query: 397 PSSNYFNQRNWKVQVFRSIDHVSASQLAKNLTVERSIHEAYVEAIRKAERFIYIENQYFI 456
S R VQV S ++ ++AI A I I YF+
Sbjct: 241 SLSLLPVGRGSTVQVLSSGPDKGLGSE------LIELNRLLLKAINSARESILIATPYFV 294
Query: 457 GGCQL 461
+L
Sbjct: 295 PDREL 299
|
Length = 438 |
| >gnl|CDD|197300 cd09842, PLDc_vPLD1_1, Catalytic domain, repeat 1, of vertebrate phospholipase D1 | Back alignment and domain information |
|---|
Score = 62.0 bits (150), Expect = 2e-11
Identities = 48/157 (30%), Positives = 78/157 (49%), Gaps = 28/157 (17%)
Query: 164 WEDVYKAIEGAKHLIYIAGWSLNPKMVLVRDSQTEIAHARGVQLGELLKHKAEEGVAVRI 223
+EDV A+E AK I+I W L+P++ L R + +L +LK KA++GV + +
Sbjct: 11 FEDVANAMEEAKEEIFITDWWLSPEIFLKR----PVVEGNRWRLDCILKRKAQQGVRIFV 66
Query: 224 MLWDD-ETSLPI---IKNKGVMRTHDEDAFAYFKHTKVICKLCPRLHHKFPTLFAHHQKT 279
ML+ + E +L I + +MR H +H P L+AHH+K
Sbjct: 67 MLYKEVELALGINSEYSKRTLMRLHPN--IKVMRH--------PDHVSSSVYLWAHHEKI 116
Query: 280 ITVDARAQDSIFDREIMSFVGGLDLCDGRYDTEKHSL 316
+ +D + ++FVGG+DL GR+D ++H L
Sbjct: 117 VVID----------QSVAFVGGIDLAYGRWDDDEHRL 143
|
Catalytic domain, repeat 1, of vertebrate phospholipase D1 (PLD1). PLDs play a pivotal role in transmembrane signaling and cellular regulation. They hydrolyze the terminal phosphodiester bond of phospholipids resulting in the formation of phosphatidic acid and alcohols. Phosphatidic acid is an essential compound involved in signal transduction. PLDs also catalyze the transphosphatidylation of phospholipids to acceptor alcohols, by which various phospholipids can be synthesized. Vertebrate PLD1 is a membrane associated phosphatidylinositol 4,5-bisphosphate (PIP2)-dependent enzyme that selectively hydrolyzes phosphatidylcholine (PC). Protein cofactors and calcium might be required for its activation. Most vertebrate PLDs have adjacent Phox (PX) and the Pleckstrin homology (PH) domains at their N-terminus, which have been shown to mediate membrane targeting of the protein and are closely linked to polyphosphoinositide signaling. Like other members of the PLD superfamily, the monomer of vertebrate PLDs consists of two catalytic domains, each of which contains one copy of the conserved HKD motif (H-x-K-x(4)-D, where x represents any amino acid residue). Two HKD motifs from two domains form a single active site. These PLDs utilize a common two-step ping-pong catalytic mechanism involving an enzyme-substrate intermediate to cleave phosphodiester bonds. The two histidine residues from the two HKD motifs play key roles in the catalysis. Upon substrate binding, a histidine residue from one HKD motif could function as the nucleophile, attacking the phosphodiester bond to create a covalent phosphohistidine intermediate, while the other histidine residue from the second HKD motif could serve as a general acid, stabilizing the leaving group. Length = 151 |
| >gnl|CDD|197301 cd09843, PLDc_vPLD2_1, Catalytic domain, repeat 1, of vertebrate phospholipase D2 | Back alignment and domain information |
|---|
Score = 60.0 bits (145), Expect = 9e-11
Identities = 48/165 (29%), Positives = 71/165 (43%), Gaps = 49/165 (29%)
Query: 166 DVYKAIEGAKHLIYIAGWSLNPKMVLVRDSQTEIAHARGVQLGELLKHKAEEGVAVRIML 225
V A+E A+ I+I W L+P++ L R AH +L +LK KAE+GV V ++L
Sbjct: 13 AVADALEQAQEEIFITDWWLSPEVFLKRP-----AHGDDWRLDIILKRKAEQGVRVCVLL 67
Query: 226 WDDETSLPIIKNKG--------------VMRTHDEDAFAYFKHTKVICKLCPRLHHKFPT 271
+ E L + N G VMR D A
Sbjct: 68 F-KEVELALGINSGYSKRKLMLLHPNIKVMRHPDHVASVVV------------------- 107
Query: 272 LFAHHQKTITVDARAQDSIFDREIMSFVGGLDLCDGRYDTEKHSL 316
L+AHH+K + +D + ++F+GGLDL GR+D + L
Sbjct: 108 LWAHHEKMVAID----------QSVAFLGGLDLAYGRWDDSDYRL 142
|
Catalytic domain, repeat 1, of vertebrate phospholipase D2 (PLD2). PLDs play a pivotal role in transmembrane signaling and cellular regulation. They hydrolyze the terminal phosphodiester bond of phospholipids with the formation of phosphatidic acid and alcohols. Phosphatidic acid is an essential compound involved in signal transduction. They also catalyze a transphosphatidylation of phospholipids to acceptor alcohols, by which various phospholipids can be synthesized. Vertebrate PLD2 is a membrane associated phosphatidylinositol 4,5-bisphosphate (PIP2)-dependent enzyme that selectively hydrolyzes phosphatidylcholine (PC). Protein cofactors and calcium might be required for its activation. Most vertebrate PLDs have adjacent Phox (PX) and the Pleckstrin homology (PH) domains at their N-terminus, which have been shown to mediate membrane targeting of the protein and are closely linked to polyphosphoinositide signaling. Like other members of the PLD superfamily, the monomer of vertebrate PLDs consists of two catalytic domains, each of which contains one copy of the conserved HKD motif (H-x-K-x(4)-D, where x represents any amino acid residue). Two HKD motifs from two domains form a single active site. These PLDs utilize a common two-step ping-pong catalytic mechanism involving an enzyme-substrate intermediate to cleave phosphodiester bonds. The two histidine residues from the two HKD motifs play key roles in the catalysis. Upon substrate binding, a histidine residue from one HKD motif could function as the nucleophile, attacking the phosphodiester bond to create a covalent phosphohistidine intermediate, while the other histidine residue from the second HKD motif could serve as a general acid, stabilizing the leaving group. Length = 145 |
| >gnl|CDD|175982 cd04015, C2_plant_PLD, C2 domain present in plant phospholipase D (PLD) | Back alignment and domain information |
|---|
Score = 58.5 bits (142), Expect = 5e-10
Identities = 29/99 (29%), Positives = 51/99 (51%), Gaps = 10/99 (10%)
Query: 14 YVTIKIDNKKVAKT---SHEHDRVWNQTFQILCAHPADATITITLKTK----CSVLGKIH 66
Y T+ + +VA+T + + VWN++F I CAH A + + T+K ++G+ +
Sbjct: 61 YATVDLAGARVARTRVIENSENPVWNESFHIYCAHYA-SHVEFTVKDNDVVGAQLIGRAY 119
Query: 67 IQALQILNEASLISGFFPLEMENGKPN-PDLRLRFMLWF 104
I +L+ + G+ P+ NGKP P ++R L F
Sbjct: 120 IPVEDLLS-GEPVEGWLPILDSNGKPPKPGAKIRVSLQF 157
|
PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 158 |
| >gnl|CDD|197209 cd09110, PLDc_CLS_1, Catalytic domain, repeat 1, of bacterial cardiolipin synthase and similar proteins | Back alignment and domain information |
|---|
Score = 55.6 bits (135), Expect = 5e-09
Identities = 44/218 (20%), Positives = 70/218 (32%), Gaps = 79/218 (36%)
Query: 163 LWEDVYKAIEGAKHLIYIAGWSLNPKMVLVRDSQTEIAHARGVQLGELLKHKAEEGVAVR 222
+ + +AI A+H I++ + RD + G + + L KA GV VR
Sbjct: 6 FFPALLEAIRAARHSIHLE-------YYIFRDDEI------GRRFRDALIEKARRGVEVR 52
Query: 223 IMLWDDETSLPI-------IKNKGVMRTHDEDAFAYFKHTKVICKLCPRLHHKFPTLFAH 275
++ D SL + ++ GV + A+ P F +
Sbjct: 53 LLY-DGFGSLGLSRRFLRELREAGV------EVRAFN----------PLSFPLFLLRLNY 95
Query: 276 --HQKTITVDARAQDSIFDREIMSFVGGLDLCDGRYDTEKHSLFQTLNSESHCFDFYQIN 333
H+K + +D + ++FVGG N
Sbjct: 96 RNHRKILVIDGK----------IAFVGG------------------------------FN 115
Query: 334 IAGASLHKGGPREPWHDVHACITGEAAWDVLTNFEQRW 371
I L K PW D H I G A D+ F + W
Sbjct: 116 IGDEYLGKDPGFGPWRDTHVRIEGPAVADLQAAFLEDW 153
|
Catalytic domain, repeat 1, of bacterial cardiolipin (CL) synthase and a few homologs found in eukaryotes and archaea. Bacterial CL synthases catalyze the reversible phosphatidyl group transfer between two phosphatidylglycerol molecules to form CL and glycerol. The monomer of bacterial CL synthase consists of two catalytic domains. Each catalytic domain contains one copy of the conserved HKD motif (H-x-K-x(4)-D, where x represents any amino acid residue) that characterizes the phospholipase D (PLD) superfamily. Two HKD motifs from two domains form a single active site involved in phosphatidyl group transfer. Bacterial CL synthases can be stimulated by phosphate and inhibited by CL, the product of the reaction, and by phosphatidate. Phosphate stimulation may be unique to enzymes with CL synthase activity belonging to the PLD superfamily. Like other PLD enzymes, bacterial CL synthases utilize a common two-step ping-pong catalytic mechanism involving an enzyme-substrate intermediate to cleave phosphodiester bonds. The two histidine residues from the two HKD motifs play key roles in the catalysis. Upon substrate binding, a histidine residue from one HKD motif could function as the nucleophile, attacking the phosphodiester bond to create a covalent phosphohistidine intermediate, while the other histidine residue from the second HKD motif could serve as a general acid, stabilizing the leaving group. Length = 154 |
| >gnl|CDD|224419 COG1502, Cls, Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 9e-07
Identities = 15/40 (37%), Positives = 28/40 (70%), Gaps = 2/40 (5%)
Query: 583 RFMVYVHSKLMIVDDVYLLIGSANINQRSMDGQRDTEIAI 622
++HSK+MI+DD +L+GSAN++ RS+ + + E+ +
Sbjct: 350 PGGAFLHSKVMIIDDRTVLVGSANLDPRSL--RLNFEVGL 387
|
Length = 438 |
| >gnl|CDD|197241 cd09143, PLDc_vPLD1_2_like_bac_2, Catalytic domain, repeat 2, of uncharacterized bacterial proteins with similarity to vertebrate phospholipases, PLD1 and PLD2 | Back alignment and domain information |
|---|
Score = 47.9 bits (115), Expect = 2e-06
Identities = 16/25 (64%), Positives = 18/25 (72%)
Query: 431 RSIHEAYVEAIRKAERFIYIENQYF 455
R I Y++AI A RFIYIENQYF
Sbjct: 7 REIEALYLDAIAAARRFIYIENQYF 31
|
Catalytic domain, repeat 2, of uncharacterized bacterial counterparts of vertebrate, yeast and plant phospholipase D (PLD, EC 3.1.4.4). PLDs hydrolyze the terminal phosphodiester bond of phospholipids with the formation of phosphatidic acid and alcohols. They also catalyze the transphosphatidylation of phospholipids to acceptor alcohols, by which various phospholipids can be synthesized. Instead of the regulatory C2 (calcium-activated lipid binding) domain in plants and the adjacent Phox (PX) and the Pleckstrin homology (PH) N-terminal domains in most mammalian and yeast PLDs, many members in this subfamily contain a SNARE associated C-terminal domain, whose functional role is unclear. Like other PLD enzymes, members in this subfamily contain two copies of the conserved HKD motif (H-x-K-x(4)-D, where x represents any amino acid residue), that may play an important role in the catalysis. Length = 142 |
| >gnl|CDD|175973 cd00030, C2, C2 domain | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 5e-06
Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 9/92 (9%)
Query: 3 LQCVFVNGKP-TYVTIKIDNKKVAKTSHEHDR---VWNQTFQILCAHPADATITITLK-- 56
L +NGK YV + + K+ KT + VWN+TF+ P T+T+ +
Sbjct: 11 LPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDK 70
Query: 57 ---TKCSVLGKIHIQALQILNEASLISGFFPL 85
+K LG++ I ++L+ + PL
Sbjct: 71 DRFSKDDFLGEVEIPLSELLDSGKEGELWLPL 102
|
The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 102 |
| >gnl|CDD|197546 smart00155, PLDc, Phospholipase D | Back alignment and domain information |
|---|
Score = 42.4 bits (101), Expect = 9e-06
Identities = 15/28 (53%), Positives = 20/28 (71%)
Query: 584 FMVYVHSKLMIVDDVYLLIGSANINQRS 611
+ +H+KLMIVDD IGSAN++ RS
Sbjct: 1 YDGVLHTKLMIVDDEIAYIGSANLDGRS 28
|
Active site motifs. Phosphatidylcholine-hydrolyzing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs). PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, aspartic acid, and/or asparagine residues which may contribute to the active site. An E. coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs. The profile contained here represents only the putative active site regions, since an accurate multiple alignment of the repeat units has not been achieved. Length = 28 |
| >gnl|CDD|197260 cd09163, PLDc_CLS_unchar2_2, Putative catalytic domain, repeat 2, of uncharacterized proteins similar to bacterial cardiolipin synthase | Back alignment and domain information |
|---|
Score = 46.0 bits (110), Expect = 1e-05
Identities = 15/23 (65%), Positives = 18/23 (78%)
Query: 589 HSKLMIVDDVYLLIGSANINQRS 611
HSKLM+VD + LIGSAN + RS
Sbjct: 94 HSKLMVVDGAWALIGSANWDPRS 116
|
Putative catalytic domain, repeat 2, of uncharacterized proteins similar to bacterial cardiolipin (CL) synthases, which catalyze the reversible phosphatidyl group transfer between two phosphatidylglycerol molecules to form CL and glycerol. Members of this subfamily contain two HKD motifs (H-x-K-x(4)-D, where x represents any amino acid residue) that characterizes the phospholipase D (PLD) superfamily. The two motifs may be part of the active site and may be involved in phosphatidyl group transfer. Length = 176 |
| >gnl|CDD|176017 cd04052, C2B_Tricalbin-like, C2 domain second repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 4e-05
Identities = 23/107 (21%), Positives = 43/107 (40%), Gaps = 13/107 (12%)
Query: 8 VNGKPT-YVTIKIDNKKVAKTS---HEHDRVWNQTFQILCAHPADATITITLKTKCS--- 60
G + Y + ++ K V T ++ WN + + L + +T+ +K
Sbjct: 9 KTGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDRHD 68
Query: 61 -VLGKIHIQALQILNEASLISGFFPLEMENGKPNPDLRLRFMLWFKP 106
VLG + I +++ S+ +FPL N R+R +KP
Sbjct: 69 PVLGSVSISLNDLIDATSVGQQWFPL-----SGNGQGRIRISALWKP 110
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 111 |
| >gnl|CDD|211988 TIGR04265, bac_cardiolipin, cardiolipin synthase | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 8e-05
Identities = 64/295 (21%), Positives = 104/295 (35%), Gaps = 83/295 (28%)
Query: 163 LWEDVYKAIEGAKHLIYIAGWSLNPKMVLVRDSQTEIAHARGVQLGELLKHKAEEGVAVR 222
+++ + + I+ A+H I++ + P + G Q+ E L KA++GV VR
Sbjct: 130 VYDALIQDIKNARHYIHLEYYIWQPDGL-------------GDQILESLMAKAKQGVHVR 176
Query: 223 IMLWDDETSLPIIK-NKGVMRTHDEDAFAYFKHTKVICKLCPRLHHKFPTLFAHHQKTIT 281
I+ DD S+ + K + R + A+F KL P L+ + +H+K I
Sbjct: 177 ILY-DDVGSVALFKSWPELFRNAGGEVVAFFP-----VKL-PLLNLRMN--NRNHRKIIV 227
Query: 282 VDARAQDSIFDREIMSFVGGLDLCDGRYDTEKHSLFQTLNSESHCFDFYQINIAGASLHK 341
+D + +VGG ++ D Y L K
Sbjct: 228 IDG----------QIGYVGGFNIGD-EY-----------------------------LGK 247
Query: 342 GGPREPWHDVHACITGEAAWDVLTNFEQRWTKQCDPSLLVPISSIPNLGHKSNIIPSSNY 401
W D H I G+A + F W Q + I +Y
Sbjct: 248 DAKFGYWRDTHLRIEGDAVTALQLIFILDWNSQT---------------GRRIIPYDPDY 292
Query: 402 FNQRNWKVQVFRSIDHVSASQLAKNLTVERSIHEAYVEAIRKAERFIYIENQYFI 456
F N Q + AS I Y++ I A++ IYI++ YFI
Sbjct: 293 FPMPN--EQAGGHGIQIIASGPD---FPWEQIKYGYLKMIYSAKKSIYIQSPYFI 342
|
This model is based on experimentally characterized bacterial cardiolipin synthases (cls) from E. coli, Staphylococcus aureus (two), and Bacillus pseudofirmus OF4. This model describes just one of several homologous but non-orthologous forms of cls. The cutoff score is set arbitrarily high to avoid false-positives. Note that there are two enzymatic activites called cardiolipin synthase. This model represents type 1, which does not rely on a CDP-linked donor, but instead does a reversible transfer of a phosphatidyl group from one phosphatidylglycerol molecule to another. Length = 483 |
| >gnl|CDD|221916 pfam13091, PLDc_2, PLD-like domain | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 1e-04
Identities = 10/34 (29%), Positives = 20/34 (58%)
Query: 589 HSKLMIVDDVYLLIGSANINQRSMDGQRDTEIAI 622
H+K I+D +IGS+N+ +R++ + + I
Sbjct: 79 HAKFYIIDGKTAIIGSSNLTRRALSLNLENNLII 112
|
Length = 129 |
| >gnl|CDD|197211 cd09112, PLDc_CLS_2, catalytic domain repeat 2 of bacterial cardiolipin synthase and similar proteins | Back alignment and domain information |
|---|
Score = 42.9 bits (102), Expect = 1e-04
Identities = 12/26 (46%), Positives = 19/26 (73%)
Query: 587 YVHSKLMIVDDVYLLIGSANINQRSM 612
++HSK +IVDD +G+AN++ RS
Sbjct: 92 FLHSKTLIVDDEIASVGTANLDIRSF 117
|
This CD corresponds to the catalytic domain repeat 2 of bacterial cardiolipin synthase (CL synthase, EC 2.7.8.-) and a few homologs found in eukaryotes and archea. Bacterial CL synthases catalyze reversible phosphatidyl group transfer between two phosphatidylglycerol molecules to form cardiolipin (CL) and glycerol. The monomer of bacterial CL synthase consists of two catalytic domains. Each catalytic domain contains one copy of conserved HKD motifs (H-X-K-X(4)-D, X represents any amino acid residue) that are the characteristic of the phospholipase D (PLD) superfamily. Two HKD motifs from two domains together form a single active site involving in phosphatidyl group transfer. Bacterial CL synthases can be stimulated by phosphate and inhibited by CL, the product of the reaction, and by phosphatidate. Phosphate stimulation may be unique to enzymes with CL synthase activity in PLD superfamily. Like other PLD enzymes, bacterial CL synthase utilize a common two-step ping-pong catalytic mechanism involving an enzyme-substrate intermediate to cleave phosphodiester bonds. The two histidine residues from the two HKD motifs play key roles in the catalysis. Upon substrate binding, a histidine residue from one HKD motif could function as the nucleophile attacking the phosphodiester bond to create a covalent phosphohistidine intermediate, while the other histidine residue from the second HKD motif could serve as a general acid stabilizing the leaving group. Length = 174 |
| >gnl|CDD|197200 cd00138, PLDc_SF, Catalytic domain of phospholipase D superfamily proteins | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 3e-04
Identities = 10/38 (26%), Positives = 20/38 (52%)
Query: 581 HRRFMVYVHSKLMIVDDVYLLIGSANINQRSMDGQRDT 618
F +H+K++++D +GSAN++ S R+
Sbjct: 78 PPHFFERLHAKVVVIDGEVAYVGSANLSTASAAQNREA 115
|
Catalytic domain of phospholipase D (PLD) superfamily proteins. The PLD superfamily is composed of a large and diverse group of proteins including plant, mammalian and bacterial PLDs, bacterial cardiolipin (CL) synthases, bacterial phosphatidylserine synthases (PSS), eukaryotic phosphatidylglycerophosphate (PGP) synthase, eukaryotic tyrosyl-DNA phosphodiesterase 1 (Tdp1), and some bacterial endonucleases (Nuc and BfiI), among others. PLD enzymes hydrolyze phospholipid phosphodiester bonds to yield phosphatidic acid and a free polar head group. They can also catalyze the transphosphatidylation of phospholipids to acceptor alcohols. The majority of members in this superfamily contain a short conserved sequence motif (H-x-K-x(4)-D, where x represents any amino acid residue), called the HKD signature motif. There are varying expanded forms of this motif in different family members. Some members contain variant HKD motifs. Most PLD enzymes are monomeric proteins with two HKD motif-containing domains. Two HKD motifs from two domains form a single active site. Some PLD enzymes have only one copy of the HKD motif per subunit but form a functionally active dimer, which has a single active site at the dimer interface containing the two HKD motifs from both subunits. Different PLD enzymes may have evolved through domain fusion of a common catalytic core with separate substrate recognition domains. Despite their various catalytic functions and a very broad range of substrate specificities, the diverse group of PLD enzymes can bind to a phosphodiester moiety. Most of them are active as bi-lobed monomers or dimers, and may possess similar core structures for catalytic activity. They are generally thought to utilize a common two-step ping-pong catalytic mechanism, involving an enzyme-substrate intermediate, to cleave phosphodiester bonds. The two histidine residues from the two HKD motifs play key roles in the catalysis. Upon substrate binding, a histidine from one HKD motif could function as the nucleophile, attacking the phosphodiester bond to create a covalent phosphohistidine intermediate, while the other histidine residue from the second HKD motif could serve as a general acid, stabilizing the leaving group. Length = 119 |
| >gnl|CDD|197226 cd09128, PLDc_unchar1_2, Putative catalytic domain, repeat 2, of uncharacterized phospholipase D-like proteins | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 5e-04
Identities = 11/36 (30%), Positives = 20/36 (55%)
Query: 587 YVHSKLMIVDDVYLLIGSANINQRSMDGQRDTEIAI 622
+H+K ++VD L+GS N + S+D R+ +
Sbjct: 90 KIHAKGIVVDGKTALVGSENWSANSLDRNREVGLIF 125
|
Putative catalytic domain, repeat 2, of uncharacterized phospholipase D (PLD, EC 3.1.4.4)-like proteins. PLD enzymes hydrolyze phospholipid phosphodiester bonds to yield phosphatidic acid and a free polar head group. They can also catalyze transphosphatidylation of phospholipids to acceptor alcohols. Members of this subfamily contain two HKD motifs (H-x-K-x(4)-D, where x represents any amino acid residue) that characterizes the PLD superfamily. The two motifs may be part of the active site and may be involved in phosphatidyl group transfer. Length = 142 |
| >gnl|CDD|197209 cd09110, PLDc_CLS_1, Catalytic domain, repeat 1, of bacterial cardiolipin synthase and similar proteins | Back alignment and domain information |
|---|
Score = 40.5 bits (96), Expect = 6e-04
Identities = 38/198 (19%), Positives = 58/198 (29%), Gaps = 78/198 (39%)
Query: 435 EAYVEAIRKAERFIYIENQYFIGGCQLWEKDKHCGCRNLIPIEIALKVVSKI--KAKERF 492
A +EAIR A I++E Y+I + D EI + + KA+
Sbjct: 8 PALLEAIRAARHSIHLE--YYI-----FRDD-----------EIGRRFRDALIEKARRGV 49
Query: 493 AVYILIPMWPEGVPTSDPVQDILHWTRETMAMMYKLIGEAIQESGQVGHPRDFLNFFCLA 552
V +L D G +G R FL
Sbjct: 50 EVRLLY----------DGF-------------------------GSLGLSRRFLREL--- 71
Query: 553 TREEKKSNGEFVP--PYSPHPMTQYWNAQMHRRFMVYVHSKLMIVDDVYLLIGSANI--- 607
+++ E P S N + HR K++++D +G NI
Sbjct: 72 ----REAGVEVRAFNPLSFPLFLLRLNYRNHR--------KILVIDGKIAFVGGFNIGDE 119
Query: 608 ---NQRSMDGQRDTEIAI 622
RDT + I
Sbjct: 120 YLGKDPGFGPWRDTHVRI 137
|
Catalytic domain, repeat 1, of bacterial cardiolipin (CL) synthase and a few homologs found in eukaryotes and archaea. Bacterial CL synthases catalyze the reversible phosphatidyl group transfer between two phosphatidylglycerol molecules to form CL and glycerol. The monomer of bacterial CL synthase consists of two catalytic domains. Each catalytic domain contains one copy of the conserved HKD motif (H-x-K-x(4)-D, where x represents any amino acid residue) that characterizes the phospholipase D (PLD) superfamily. Two HKD motifs from two domains form a single active site involved in phosphatidyl group transfer. Bacterial CL synthases can be stimulated by phosphate and inhibited by CL, the product of the reaction, and by phosphatidate. Phosphate stimulation may be unique to enzymes with CL synthase activity belonging to the PLD superfamily. Like other PLD enzymes, bacterial CL synthases utilize a common two-step ping-pong catalytic mechanism involving an enzyme-substrate intermediate to cleave phosphodiester bonds. The two histidine residues from the two HKD motifs play key roles in the catalysis. Upon substrate binding, a histidine residue from one HKD motif could function as the nucleophile, attacking the phosphodiester bond to create a covalent phosphohistidine intermediate, while the other histidine residue from the second HKD motif could serve as a general acid, stabilizing the leaving group. Length = 154 |
| >gnl|CDD|216022 pfam00614, PLDc, Phospholipase D Active site motif | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 6e-04
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 587 YVHSKLMIVDDVYLLIGSANINQRS 611
+H+K+++VDD IG AN++ S
Sbjct: 4 RLHTKIVVVDDEVAYIGGANLDGGS 28
|
Phosphatidylcholine-hydrolysing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs). PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, and/or asparagine residues which may contribute to the active site. aspartic acid. An E. coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs. The profile contained here represents only the putative active site regions, since an accurate multiple alignment of the repeat units has not been achieved. Length = 28 |
| >gnl|CDD|197256 cd09159, PLDc_ybhO_like_2, Catalytic domain, repeat 2, of Escherichia coli cardiolipin synthase ybhO and similar proteins | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 7e-04
Identities = 8/24 (33%), Positives = 17/24 (70%)
Query: 589 HSKLMIVDDVYLLIGSANINQRSM 612
H+K ++D + +GS+N++ RS+
Sbjct: 94 HAKTAVIDGDWATVGSSNLDPRSL 117
|
Catalytic domain, repeat 2, of Escherichia coli cardiolipin (CL) synthase ybhO and similar proteins. In Escherichia coli, there are two genes, f413 (ybhO) and o493 (ymdC), which are homologous to gene cls that encodes the Escherichia coli CL synthase. The prototype of this subfamily is Escherichia coli CL synthase ybhO specified by the f413 (ybhO) gene. ybhO is a membrane-bound protein that catalyzes the formation of cardiolipin (CL) by transferring phosphatidyl group between two phosphatidylglycerol molecules. It can also catalyze phosphatidyl group transfer to water to form phosphatidate. In contrast to the Escherichia coli CL synthase encoded by the cls gene (EcCLS), ybhO does not hydrolyze CL. Moreover, ybhO lacks an N-terminal segment encoded by Escherichia coli cls, which makes ybhO easy to denature. The monomer of ybhO consists of two catalytic domains. Each catalytic domain contains one copy of the conserved HKD motif (H-x-K-x(4)-D, where x represents any amino acid residue) that characterizes the phospholipase D (PLD) superfamily. Two HKD motifs from two domains form a single active site involved in phosphatidyl group transfer. ybhO can be stimulated by phosphate and inhibited by CL, the product of the reaction, and by phosphatidate. Phosphate stimulation may be unique to enzymes with CL synthase activity belonging to the PLD superfamily. Length = 170 |
| >gnl|CDD|197225 cd09127, PLDc_unchar1_1, Putative catalytic domain, repeat 1, of uncharacterized phospholipase D-like proteins | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.001
Identities = 26/135 (19%), Positives = 36/135 (26%), Gaps = 50/135 (37%)
Query: 159 SPGKLWEDVYKAIEGAKHLIYIAGWSLNPKMVLVRDSQTEIAHARGVQLGELLKHKAEEG 218
P V AI AK I + + + + A L A+ G
Sbjct: 5 QPDDGVAPVVDAIASAKRSILLKMYEF---------TDPALEKA--------LAAAAKRG 47
Query: 219 VAVRIML------WDD--ETSLPIIKNKG--VMRTHDEDAFAYFKHTKVICKLCPRLHHK 268
V VR++L E L + G V T+ + Y
Sbjct: 48 VRVRVLLEGGPVGGISRAEKLLDYLNEAGVEVRWTNGTARYRY----------------- 90
Query: 269 FPTLFAHHQKTITVD 283
H K I VD
Sbjct: 91 ------THAKYIVVD 99
|
Putative catalytic domain, repeat 1, of uncharacterized phospholipase D (PLD, EC 3.1.4.4)-like proteins. PLD enzymes hydrolyze phospholipid phosphodiester bonds to yield phosphatidic acid and a free polar head group. They can also catalyze transphosphatidylation of phospholipids to acceptor alcohols. Members of this subfamily contain two HKD motifs (H-x-K-x(4)-D, where x represents any amino acid residue) that characterizes the PLD superfamily. The two motifs may be part of the active site and may be involved in phosphatidyl group transfer. Length = 141 |
| >gnl|CDD|197212 cd09113, PLDc_ymdC_like_2, Putative catalytic domain, repeat 2, of Escherichia coli uncharacterized protein ymdC and similar proteins | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 0.002
Identities = 11/34 (32%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 589 HSKLMIVDDVYLLIGSANINQRSMDGQRDTEIAI 622
H+K ++DD + +GS N++ RS +TE+ +
Sbjct: 118 HAKSFVIDDRLVFVGSFNLDPRSAY--LNTEMGL 149
|
Putative catalytic domain, repeat 2, of Escherichia coli uncharacterized protein ymdC and similar proteins. In Escherichia coli, there are two genes, f413 (ybhO) and o493 (ymdC), which are homologous to gene cls that encodes the Escherichia coli cardiolipin (CL) synthase. The prototype of this subfamily is an uncharacterized protein ymdC specified by the o493 (ymdC) gene. Although the functional characterization of ymdC and similar proteins remains unknown, members of this subfamily show high sequence homology to bacterial CL synthases, which catalyze the reversible phosphatidyl group transfer between two phosphatidylglycerol molecules to form CL and glycerol. Moreover, ymdC and its similar proteins contain two HKD motifs (H-x-K-x(4)-D, where x represents any amino acid residue) that characteriszes the phospholipase D (PLD) superfamily. The two motifs may be part of the active site and may be involved in phosphatidyl group transfer. Length = 218 |
| >gnl|CDD|197259 cd09162, PLDc_CLS_unchar1_2, Putative catalytic domain, repeat 2, of uncharacterized proteins similar to bacterial cardiolipin synthase | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.003
Identities = 13/33 (39%), Positives = 24/33 (72%), Gaps = 2/33 (6%)
Query: 580 MHRRFMVYVHSKLMIVDDVYLLIGSANINQRSM 612
+++ M+ H+K ++VDD L+GSAN++ RS+
Sbjct: 87 LYQPGML--HAKAVVVDDKLALVGSANLDMRSL 117
|
Putative catalytic domain, repeat 2, of uncharacterized proteins similar to bacterial cardiolipin (CL) synthases, which catalyze the reversible phosphatidyl group transfer between two phosphatidylglycerol molecules to form CL and glycerol. Members of this subfamily contain two HKD motifs (H-x-K-x(4)-D, where x represents any amino acid residue) that characterizes the phospholipase D (PLD) superfamily. The two motifs may be part of the active site and may be involved in phosphatidyl group transfer. Length = 172 |
| >gnl|CDD|197230 cd09132, PLDc_unchar4, Putative catalytic domain of uncharacterized phospholipase D-like proteins | Back alignment and domain information |
|---|
Score = 38.0 bits (89), Expect = 0.003
Identities = 12/53 (22%), Positives = 22/53 (41%)
Query: 562 EFVPPYSPHPMTQYWNAQMHRRFMVYVHSKLMIVDDVYLLIGSANINQRSMDG 614
E + P W + +H+K+++ D LL+ SAN+ M+
Sbjct: 62 ELMWPKLAGATLYVWPEKKRPGKRASLHAKVIVADRRRLLVTSANLTGAGMER 114
|
Putative catalytic domain of uncharacterized phospholipase D (PLD, EC 3.1.4.4)-like proteins. Members of this subfamily contain one copy of HKD motif (H-x-K-x(4)-D, where x represents any amino acid residue) that characterizes the PLD superfamily. Length = 122 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 737 | |||
| PLN02352 | 758 | phospholipase D epsilon | 100.0 | |
| PLN02270 | 808 | phospholipase D alpha | 100.0 | |
| PLN03008 | 868 | Phospholipase D delta | 100.0 | |
| KOG1329 | 887 | consensus Phospholipase D1 [Lipid transport and me | 100.0 | |
| PLN02866 | 1068 | phospholipase D | 100.0 | |
| PRK12452 | 509 | cardiolipin synthetase; Reviewed | 100.0 | |
| PRK01642 | 483 | cls cardiolipin synthetase; Reviewed | 100.0 | |
| PRK11263 | 411 | cardiolipin synthase 2; Provisional | 100.0 | |
| COG1502 | 438 | Cls Phosphatidylserine/phosphatidylglycerophosphat | 100.0 | |
| PRK09428 | 451 | pssA phosphatidylserine synthase; Provisional | 100.0 | |
| PHA02820 | 424 | phospholipase-D-like protein; Provisional | 100.0 | |
| PHA03003 | 369 | palmytilated EEV membrane glycoprotein; Provisiona | 100.0 | |
| PF12357 | 74 | PLD_C: Phospholipase D C terminal ; InterPro: IPR0 | 99.93 | |
| PRK05443 | 691 | polyphosphate kinase; Provisional | 99.81 | |
| cd04015 | 158 | C2_plant_PLD C2 domain present in plant phospholip | 99.81 | |
| cd04016 | 121 | C2_Tollip C2 domain present in Toll-interacting pr | 99.81 | |
| TIGR03705 | 672 | poly_P_kin polyphosphate kinase 1. Members of this | 99.76 | |
| cd04013 | 146 | C2_SynGAP_like C2 domain present in Ras GTPase act | 99.75 | |
| cd08379 | 126 | C2D_MCTP_PRT_plant C2 domain fourth repeat found i | 99.72 | |
| cd04052 | 111 | C2B_Tricalbin-like C2 domain second repeat present | 99.72 | |
| cd08400 | 126 | C2_Ras_p21A1 C2 domain present in RAS p21 protein | 99.71 | |
| cd04042 | 121 | C2A_MCTP_PRT C2 domain first repeat found in Multi | 99.7 | |
| cd08401 | 121 | C2A_RasA2_RasA3 C2 domain first repeat present in | 99.69 | |
| cd08682 | 126 | C2_Rab11-FIP_classI C2 domain found in Rab11-famil | 99.67 | |
| cd04019 | 150 | C2C_MCTP_PRT_plant C2 domain third repeat found in | 99.65 | |
| cd08373 | 127 | C2A_Ferlin C2 domain first repeat in Ferlin. Ferli | 99.64 | |
| cd08678 | 126 | C2_C21orf25-like C2 domain found in the Human chro | 99.61 | |
| cd04054 | 121 | C2A_Rasal1_RasA4 C2 domain first repeat present in | 99.6 | |
| PHA02820 | 424 | phospholipase-D-like protein; Provisional | 99.6 | |
| cd08681 | 118 | C2_fungal_Inn1p-like C2 domain found in fungal Ing | 99.59 | |
| cd00138 | 176 | PLDc Phospholipase D. Active site motifs; The PLD | 99.59 | |
| cd04014 | 132 | C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) | 99.58 | |
| cd08378 | 121 | C2B_MCTP_PRT_plant C2 domain second repeat found i | 99.58 | |
| cd04022 | 127 | C2A_MCTP_PRT_plant C2 domain first repeat found in | 99.57 | |
| cd04044 | 124 | C2A_Tricalbin-like C2 domain first repeat present | 99.57 | |
| cd08391 | 121 | C2A_C2C_Synaptotagmin_like C2 domain first and thi | 99.57 | |
| KOG1030 | 168 | consensus Predicted Ca2+-dependent phospholipid-bi | 99.56 | |
| cd08395 | 120 | C2C_Munc13 C2 domain third repeat in Munc13 (mamma | 99.56 | |
| cd08376 | 116 | C2B_MCTP_PRT C2 domain second repeat found in Mult | 99.56 | |
| cd04036 | 119 | C2_cPLA2 C2 domain present in cytosolic PhosphoLip | 99.55 | |
| cd04025 | 123 | C2B_RasA1_RasA4 C2 domain second repeat present in | 99.52 | |
| cd08377 | 119 | C2C_MCTP_PRT C2 domain third repeat found in Multi | 99.52 | |
| cd04050 | 105 | C2B_Synaptotagmin-like C2 domain second repeat pre | 99.52 | |
| cd08690 | 155 | C2_Freud-1 C2 domain found in 5' repressor element | 99.52 | |
| cd08383 | 117 | C2A_RasGAP C2 domain (first repeat) of Ras GTPase | 99.51 | |
| cd04033 | 133 | C2_NEDD4_NEDD4L C2 domain present in the Human neu | 99.51 | |
| KOG3603 | 456 | consensus Predicted phospholipase D [General funct | 99.51 | |
| cd04010 | 148 | C2B_RasA3 C2 domain second repeat present in RAS p | 99.48 | |
| cd08677 | 118 | C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a | 99.47 | |
| cd00138 | 176 | PLDc Phospholipase D. Active site motifs; The PLD | 99.47 | |
| PHA03003 | 369 | palmytilated EEV membrane glycoprotein; Provisiona | 99.47 | |
| PRK13912 | 177 | nuclease NucT; Provisional | 99.47 | |
| cd08688 | 110 | C2_KIAA0528-like C2 domain found in the Human KIAA | 99.46 | |
| cd04024 | 128 | C2A_Synaptotagmin-like C2 domain first repeat pres | 99.45 | |
| cd08375 | 136 | C2_Intersectin C2 domain present in Intersectin. A | 99.45 | |
| cd08685 | 119 | C2_RGS-like C2 domain of the Regulator Of G-Protei | 99.45 | |
| cd08394 | 127 | C2A_Munc13 C2 domain first repeat in Munc13 (mamma | 99.44 | |
| cd08382 | 123 | C2_Smurf-like C2 domain present in Smad ubiquitina | 99.44 | |
| cd04051 | 125 | C2_SRC2_like C2 domain present in Soybean genes Re | 99.44 | |
| cd04046 | 126 | C2_Calpain C2 domain present in Calpain proteins. | 99.43 | |
| cd04043 | 126 | C2_Munc13_fungal C2 domain in Munc13 (mammalian un | 99.43 | |
| cd08381 | 122 | C2B_PI3K_class_II C2 domain second repeat present | 99.43 | |
| cd04018 | 151 | C2C_Ferlin C2 domain third repeat in Ferlin. Ferli | 99.42 | |
| cd04011 | 111 | C2B_Ferlin C2 domain second repeat in Ferlin. Ferl | 99.42 | |
| PRK12452 | 509 | cardiolipin synthetase; Reviewed | 99.42 | |
| PRK13912 | 177 | nuclease NucT; Provisional | 99.41 | |
| cd04045 | 120 | C2C_Tricalbin-like C2 domain third repeat present | 99.41 | |
| cd08387 | 124 | C2A_Synaptotagmin-8 C2A domain first repeat presen | 99.41 | |
| cd04027 | 127 | C2B_Munc13 C2 domain second repeat in Munc13 (mamm | 99.4 | |
| cd04028 | 146 | C2B_RIM1alpha C2 domain second repeat contained in | 99.4 | |
| cd04040 | 115 | C2D_Tricalbin-like C2 domain fourth repeat present | 99.39 | |
| cd04029 | 125 | C2A_SLP-4_5 C2 domain first repeat present in Syna | 99.39 | |
| cd04021 | 125 | C2_E3_ubiquitin_ligase C2 domain present in E3 ubi | 99.37 | |
| cd08385 | 124 | C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repe | 99.37 | |
| cd08393 | 125 | C2A_SLP-1_2 C2 domain first repeat present in Syna | 99.36 | |
| cd04039 | 108 | C2_PSD C2 domain present in Phosphatidylserine dec | 99.35 | |
| PF13091 | 126 | PLDc_2: PLD-like domain; PDB: 2ZE4_A 2ZE9_A 1BYS_A | 99.34 | |
| cd08676 | 153 | C2A_Munc13-like C2 domain first repeat in Munc13 ( | 99.33 | |
| cd04041 | 111 | C2A_fungal C2 domain first repeat; fungal group. C | 99.33 | |
| cd04017 | 135 | C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferl | 99.32 | |
| cd08386 | 125 | C2A_Synaptotagmin-7 C2A domain first repeat presen | 99.31 | |
| cd08392 | 128 | C2A_SLP-3 C2 domain first repeat present in Synapt | 99.31 | |
| cd04048 | 120 | C2A_Copine C2 domain first repeat in Copine. There | 99.3 | |
| cd00275 | 128 | C2_PLC_like C2 domain present in Phosphoinositide- | 99.29 | |
| cd08388 | 128 | C2A_Synaptotagmin-4-11 C2A domain first repeat pre | 99.29 | |
| cd04031 | 125 | C2A_RIM1alpha C2 domain first repeat contained in | 99.29 | |
| cd08680 | 124 | C2_Kibra C2 domain found in Human protein Kibra. K | 99.28 | |
| cd08675 | 137 | C2B_RasGAP C2 domain second repeat of Ras GTPase a | 99.27 | |
| cd08691 | 137 | C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-li | 99.27 | |
| cd04030 | 127 | C2C_KIAA1228 C2 domain third repeat present in unc | 99.27 | |
| cd08521 | 123 | C2A_SLP C2 domain first repeat present in Synaptot | 99.27 | |
| cd08686 | 118 | C2_ABR C2 domain in the Active BCR (Breakpoint clu | 99.27 | |
| cd04049 | 124 | C2_putative_Elicitor-responsive_gene C2 domain pre | 99.26 | |
| cd08390 | 123 | C2A_Synaptotagmin-15-17 C2A domain first repeat pr | 99.25 | |
| cd08389 | 124 | C2A_Synaptotagmin-14_16 C2A domain first repeat pr | 99.24 | |
| cd04038 | 145 | C2_ArfGAP C2 domain present in Arf GTPase Activati | 99.22 | |
| PF13091 | 126 | PLDc_2: PLD-like domain; PDB: 2ZE4_A 2ZE9_A 1BYS_A | 99.19 | |
| cd04032 | 127 | C2_Perforin C2 domain of Perforin. Perforin contai | 99.19 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 99.18 | |
| cd08404 | 136 | C2B_Synaptotagmin-4 C2 domain second repeat presen | 99.18 | |
| cd04026 | 131 | C2_PKC_alpha_gamma C2 domain in Protein Kinase C ( | 99.18 | |
| cd04020 | 162 | C2B_SLP_1-2-3-4 C2 domain second repeat present in | 99.16 | |
| cd08407 | 138 | C2B_Synaptotagmin-13 C2 domain second repeat prese | 99.16 | |
| PRK11263 | 411 | cardiolipin synthase 2; Provisional | 99.16 | |
| KOG1028 | 421 | consensus Ca2+-dependent phospholipid-binding prot | 99.15 | |
| cd08406 | 136 | C2B_Synaptotagmin-12 C2 domain second repeat prese | 99.14 | |
| cd08384 | 133 | C2B_Rabphilin_Doc2 C2 domain second repeat present | 99.14 | |
| PLN02223 | 537 | phosphoinositide phospholipase C | 99.14 | |
| cd08403 | 134 | C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repe | 99.13 | |
| cd04009 | 133 | C2B_Munc13-like C2 domain second repeat in Munc13 | 99.12 | |
| KOG0696 | 683 | consensus Serine/threonine protein kinase [Signal | 99.12 | |
| COG5038 | 1227 | Ca2+-dependent lipid-binding protein, contains C2 | 99.11 | |
| cd08402 | 136 | C2B_Synaptotagmin-1 C2 domain second repeat presen | 99.11 | |
| cd04037 | 124 | C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferli | 99.11 | |
| cd08405 | 136 | C2B_Synaptotagmin-7 C2 domain second repeat presen | 99.11 | |
| cd00276 | 134 | C2B_Synaptotagmin C2 domain second repeat present | 99.09 | |
| cd08410 | 135 | C2B_Synaptotagmin-17 C2 domain second repeat prese | 99.09 | |
| KOG1011 | 1283 | consensus Neurotransmitter release regulator, UNC- | 99.07 | |
| PRK01642 | 483 | cls cardiolipin synthetase; Reviewed | 99.05 | |
| PRK05443 | 691 | polyphosphate kinase; Provisional | 99.04 | |
| cd04047 | 110 | C2B_Copine C2 domain second repeat in Copine. Ther | 99.04 | |
| cd08408 | 138 | C2B_Synaptotagmin-14_16 C2 domain second repeat pr | 99.04 | |
| PLN02952 | 599 | phosphoinositide phospholipase C | 99.03 | |
| cd08692 | 135 | C2B_Tac2-N C2 domain second repeat found in Tac2-N | 99.0 | |
| cd08409 | 137 | C2B_Synaptotagmin-15 C2 domain second repeat prese | 99.0 | |
| cd04035 | 123 | C2A_Rabphilin_Doc2 C2 domain first repeat present | 99.0 | |
| PLN02230 | 598 | phosphoinositide phospholipase C 4 | 98.97 | |
| PLN02222 | 581 | phosphoinositide phospholipase C 2 | 98.95 | |
| KOG0169 | 746 | consensus Phosphoinositide-specific phospholipase | 98.94 | |
| cd08689 | 109 | C2_fungal_Pkc1p C2 domain found in protein kinase | 98.9 | |
| PLN02228 | 567 | Phosphoinositide phospholipase C | 98.88 | |
| KOG3603 | 456 | consensus Predicted phospholipase D [General funct | 98.85 | |
| PF00614 | 28 | PLDc: Phospholipase D Active site motif; InterPro: | 98.82 | |
| PRK09428 | 451 | pssA phosphatidylserine synthase; Provisional | 98.8 | |
| cd00030 | 102 | C2 C2 domain. The C2 domain was first identified i | 98.78 | |
| KOG2059 | 800 | consensus Ras GTPase-activating protein [Signal tr | 98.78 | |
| smart00239 | 101 | C2 Protein kinase C conserved region 2 (CalB). Ca2 | 98.74 | |
| COG5038 | 1227 | Ca2+-dependent lipid-binding protein, contains C2 | 98.72 | |
| PF00168 | 85 | C2: C2 domain; InterPro: IPR000008 The C2 domain i | 98.66 | |
| smart00155 | 28 | PLDc Phospholipase D. Active site motifs. Phosphat | 98.57 | |
| cd08374 | 133 | C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferli | 98.51 | |
| KOG1264 | 1267 | consensus Phospholipase C [Lipid transport and met | 98.5 | |
| COG1502 | 438 | Cls Phosphatidylserine/phosphatidylglycerophosphat | 98.42 | |
| PF00614 | 28 | PLDc: Phospholipase D Active site motif; InterPro: | 98.28 | |
| KOG1028 | 421 | consensus Ca2+-dependent phospholipid-binding prot | 98.11 | |
| KOG1328 | 1103 | consensus Synaptic vesicle protein BAIAP3, involve | 98.1 | |
| KOG1031 | 1169 | consensus Predicted Ca2+-dependent phospholipid-bi | 98.01 | |
| TIGR03705 | 672 | poly_P_kin polyphosphate kinase 1. Members of this | 97.99 | |
| KOG2059 | 800 | consensus Ras GTPase-activating protein [Signal tr | 97.86 | |
| KOG1328 | 1103 | consensus Synaptic vesicle protein BAIAP3, involve | 97.75 | |
| KOG3964 | 469 | consensus Phosphatidylglycerolphosphate synthase [ | 97.7 | |
| smart00155 | 28 | PLDc Phospholipase D. Active site motifs. Phosphat | 97.59 | |
| PF07894 | 284 | DUF1669: Protein of unknown function (DUF1669); In | 97.59 | |
| PF13918 | 177 | PLDc_3: PLD-like domain | 97.53 | |
| PLN02866 | 1068 | phospholipase D | 97.53 | |
| cd08683 | 143 | C2_C2cd3 C2 domain found in C2 calcium-dependent d | 97.34 | |
| KOG1011 | 1283 | consensus Neurotransmitter release regulator, UNC- | 97.0 | |
| PF13090 | 352 | PP_kinase_C: Polyphosphate kinase C-terminal domai | 96.83 | |
| PLN02964 | 644 | phosphatidylserine decarboxylase | 96.46 | |
| PF07894 | 284 | DUF1669: Protein of unknown function (DUF1669); In | 96.28 | |
| KOG1326 | 1105 | consensus Membrane-associated protein FER-1 and re | 96.24 | |
| PF13918 | 177 | PLDc_3: PLD-like domain | 96.19 | |
| KOG1013 | 362 | consensus Synaptic vesicle protein rabphilin-3A [I | 95.91 | |
| KOG1265 | 1189 | consensus Phospholipase C [Lipid transport and met | 95.79 | |
| KOG1329 | 887 | consensus Phospholipase D1 [Lipid transport and me | 95.65 | |
| PF11495 | 233 | Regulator_TrmB: Archaeal transcriptional regulator | 95.63 | |
| cd08687 | 98 | C2_PKN-like C2 domain in Protein kinase C-like (PK | 95.61 | |
| PLN02352 | 758 | phospholipase D epsilon | 95.54 | |
| COG3886 | 198 | Predicted HKD family nuclease [DNA replication, re | 95.53 | |
| KOG1013 | 362 | consensus Synaptic vesicle protein rabphilin-3A [I | 95.5 | |
| COG0855 | 696 | Ppk Polyphosphate kinase [Inorganic ion transport | 94.8 | |
| KOG0905 | 1639 | consensus Phosphoinositide 3-kinase [Signal transd | 94.78 | |
| PF10358 | 143 | NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; | 94.51 | |
| PLN03008 | 868 | Phospholipase D delta | 94.31 | |
| PLN02270 | 808 | phospholipase D alpha | 93.86 | |
| cd08684 | 103 | C2A_Tac2-N C2 domain first repeat found in Tac2-N | 92.86 | |
| cd08397 | 159 | C2_PI3K_class_III C2 domain present in class III p | 92.05 | |
| PF13090 | 352 | PP_kinase_C: Polyphosphate kinase C-terminal domai | 91.8 | |
| cd08694 | 196 | C2_Dock-A C2 domains found in Dedicator Of CytoKin | 91.12 | |
| KOG3837 | 523 | consensus Uncharacterized conserved protein, conta | 90.64 | |
| KOG0694 | 694 | consensus Serine/threonine protein kinase [Signal | 90.11 | |
| KOG1326 | 1105 | consensus Membrane-associated protein FER-1 and re | 89.94 | |
| PF15625 | 168 | CC2D2AN-C2: CC2D2A N-terminal C2 domain | 89.64 | |
| PF14429 | 184 | DOCK-C2: C2 domain in Dock180 and Zizimin proteins | 89.45 | |
| cd08398 | 158 | C2_PI3K_class_I_alpha C2 domain present in class I | 88.35 | |
| COG0855 | 696 | Ppk Polyphosphate kinase [Inorganic ion transport | 86.22 | |
| KOG2060 | 405 | consensus Rab3 effector RIM1 and related proteins, | 86.04 | |
| PF09565 | 296 | RE_NgoFVII: NgoFVII restriction endonuclease; Inte | 85.5 | |
| PF00792 | 142 | PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: I | 85.17 | |
| cd08695 | 189 | C2_Dock-B C2 domains found in Dedicator Of CytoKin | 85.0 | |
| cd08380 | 156 | C2_PI3K_like C2 domain present in phosphatidylinos | 81.36 | |
| cd08693 | 173 | C2_PI3K_class_I_beta_delta C2 domain present in cl | 80.42 |
| >PLN02352 phospholipase D epsilon | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-181 Score=1529.79 Aligned_cols=725 Identities=80% Similarity=1.349 Sum_probs=673.3
Q ss_pred cccccCCCCcEEEEEECCEEEeeccCCCCCeEeEEEEEEcCCCc--eEEEEEEecCCCcccEEEEeehhhhhccccc-cc
Q 004680 4 QCVFVNGKPTYVTIKIDNKKVAKTSHEHDRVWNQTFQILCAHPA--DATITITLKTKCSVLGKIHIQALQILNEASL-IS 80 (737)
Q Consensus 4 ~~~~~~~~DPYv~v~l~~~~~~rTk~~~nP~WnE~F~~~~~~~~--~l~~~V~D~d~d~~iG~~~ipl~~l~~~g~~-~d 80 (737)
+|.++...||||||+|++++|+||+|..||+|||+|+|+|+|.+ .|+|+|||. .++||.++||+++|+ +|+. ++
T Consensus 29 ~~~~~~~~~~y~tv~~~~~~v~rt~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~~--~~~ig~~~~p~~~~~-~g~~~~~ 105 (758)
T PLN02352 29 NCIFLNGKATYVTIKIGNKKVAKTSHEYDRVWNQTFQILCAHPLDSTITITLKTK--CSILGRFHIQAHQIV-TEASFIN 105 (758)
T ss_pred cccccCCCCceEEEEeCCcEEecCCCCCCCccccceeEEeeeecCCcEEEEEecC--CeEEEEEEEEHHHhh-CCCcccc
Confidence 46666666999999999999999997779999999999999998 799999994 899999999999999 8866 99
Q ss_pred ceEecccCCCCCCCCccEEEEEeccCCCccccccccccCCCcccCCCCCcccccCceeEEeeccCCCCCCCCCCcCCCCc
Q 004680 81 GFFPLEMENGKPNPDLRLRFMLWFKPAAYEPTWGKIISNGEFQGLRNASFPQRSNCHVKLYHDAHHSSSFEPPYDLCGSP 160 (737)
Q Consensus 81 ~w~~L~~~~~k~~~~~~l~l~l~f~~~~~~~~w~~g~~~~~~~~~~~~~~p~~~gn~v~ly~dg~~~~~f~p~~~~~~~~ 160 (737)
.|++|++.+|||++.++||++|+|+|+.+++.|++||++++|.|||++|||+|+||+||||||+|.+++|.|.|++.-.|
T Consensus 106 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~gvp~~~f~~r~g~~v~lyqdah~~~~~~p~i~l~~~~ 185 (758)
T PLN02352 106 GFFPLIMENGKPNPELKLRFMLWFRPAELEPTWCKILENGSFQGLRNATFPQRSNCHVILYQDAHHCSTFQPPVDLCGSP 185 (758)
T ss_pred eEEEcccCCCCCCCCCEEEEEEEEEEhhhCcchhhcccCCCcCCcCCcccccCCCCEEEEEecCCCccccCCcceeecCH
Confidence 99999999999996689999999999999999999999999999999999999999999999999999999999998889
Q ss_pred hhHHHHHHHHHHccccEEEEEEeecCCceEEeeCCchhhccchHHHHHHHHHHHHHcCCeEEEEEeCCCCCccccccccc
Q 004680 161 GKLWEDVYKAIEGAKHLIYIAGWSLNPKMVLVRDSQTEIAHARGVQLGELLKHKAEEGVAVRIMLWDDETSLPIIKNKGV 240 (737)
Q Consensus 161 ~~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~L~r~~~~~~~~~~~~~l~~lL~~kA~rGV~VriLvwD~~~s~~~~~~~g~ 240 (737)
.+||++|++||++|||+|||++|+|+++++|+|++..+.|++.+.+|+++|++||+|||+|+||+||+.++.+..+..|+
T Consensus 186 ~~~f~al~eAI~~Ar~sI~I~gW~~d~~i~L~R~~~~~~p~~~g~~LgdLLk~KA~eGV~VrLLvWDd~~s~~~~~~~g~ 265 (758)
T PLN02352 186 RKLWEDVYKAIEGAKHLIYIAGWSFNPKMVLVRDPETDIPHARGVKLGELLKRKAEEGVAVRVMLWDDETSLPIIKNKGV 265 (758)
T ss_pred HHHHHHHHHHHHhhccEEEEEEEEecCCceeccCcccccccccchHHHHHHHHHHHCCCEEEEEEEcCCCcccccccccc
Confidence 99999999999999999999999999999999987544444468999999999999999999999999998877777899
Q ss_pred cccccHHHHHHHhcCCcEEEEcCCCCCCCCccccCccceEEecCCCcCcccccceEEEEccccCCCCCcCCCCCcccccC
Q 004680 241 MRTHDEDAFAYFKHTKVICKLCPRLHHKFPTLFAHHQKTITVDARAQDSIFDREIMSFVGGLDLCDGRYDTEKHSLFQTL 320 (737)
Q Consensus 241 ~~~~~~~~~~~l~~~gv~v~~~~r~~~~~~~~~~hHqK~vVVD~~~~~~~~~~~~vAfvGG~nL~~~r~Dt~~H~l~~~l 320 (737)
|.+|++++.++|++++|+|.++|+.+...++.++||||+||||++++++.++|+++|||||+|||++||||++|++|+++
T Consensus 266 m~th~~~~~~~f~h~~V~~~l~pr~~~~~~~~~SHHQK~VVID~~~~~~~~~r~~vAFVGGIDLc~GRwDT~~H~l~d~l 345 (758)
T PLN02352 266 MGTHDEDAFAYFKHTKVVCKLCPRLHKKFPTLFAHHQKTITVDTRANDSISEREIMSFVGGLDLCDGRYDTEEHSLFRTL 345 (758)
T ss_pred cccchHHHHhhccCCceEEeeccccccccccccccccceEEEccCCCCCccccceEEEEcceeccCCccCCccCCccccc
Confidence 99999999999999999999999887778899999999999999877655689999999999999999999999999999
Q ss_pred CCCcccCccccccccCcccCCCCCCCCceeccceeeCHHHHHHHHHHHHHhhhccCCCCCcCCCCCCCCCCCCCCCCCCC
Q 004680 321 NSESHCFDFYQINIAGASLHKGGPREPWHDVHACITGEAAWDVLTNFEQRWTKQCDPSLLVPISSIPNLGHKSNIIPSSN 400 (737)
Q Consensus 321 ~~~~~~~d~~~~~~~g~~~~~~~~~~pWhDv~~~v~Gpav~dl~~~F~~rW~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 400 (737)
++..|++||+|++|+|..++.++||+||||+||+|+||||+||.++|+|||+++++..++++...+.++..++. ..
T Consensus 346 ~t~~~~~Df~~~~~~g~~~~~g~PR~PWHDvh~~V~GpAA~Dv~~~F~qRW~~~~~~~~l~p~~~~~~~~~~p~----~~ 421 (758)
T PLN02352 346 NTESHCQDFYQTSIAGAKLQKGGPREPWHDAHACIVGEAAWDVLTNFEQRWTKQCNPSVLVPTSSIRNLVHQPG----SS 421 (758)
T ss_pred ccccccccccccccccccCCCCCCCCCcEeEEEEEECHHHHHHHHHHHHHHhhccCccccCCcccccccccCCC----CC
Confidence 98668899999999998778899999999999999999999999999999999998766555444433322111 11
Q ss_pred CCCCCCeeeEEEeecCccchhhhccCccchhHHHHHHHHHHHhccceEEEeeccccCCcccccccccCCCCCccHHHHHH
Q 004680 401 YFNQRNWKVQVFRSIDHVSASQLAKNLTVERSIHEAYVEAIRKAERFIYIENQYFIGGCQLWEKDKHCGCRNLIPIEIAL 480 (737)
Q Consensus 401 ~~~~~~~~vqv~rs~~~~~~~~~p~~~~~~~sI~~ayl~aI~~A~~~IyIEnqYFi~~~~~w~~~~~~~~~n~i~~~la~ 480 (737)
+.+.++|+||++||++.+++.+||++...++||++||++||++||||||||||||++++++|+++++.++.|+||++|++
T Consensus 422 ~~~~~~w~VQv~RSid~~sa~~~P~~~~~erSIq~AYi~AIr~AqhfIYIENQYFiss~~~w~~~~~~~~~N~I~~eIa~ 501 (758)
T PLN02352 422 ESNNRNWKVQVYRSIDHVSASHMPRNLPVERSIHEAYVEAIRRAERFIYIENQYFIGGCHLWEKDNHCGCTNLIPIEIAL 501 (758)
T ss_pred cccCCcccceEEEecCccccccCCCCCchhhHHHHHHHHHHHhhhhEEEEehhhhhccccccccccccchhcchHHHHHH
Confidence 23578999999999999999999999899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCcEEEEEecCCCCCCCCCCcchhhhhhHHHhHHHHHHHHHHHHHhcCCCCCCcCceEEeeccchhhhccC
Q 004680 481 KVVSKIKAKERFAVYILIPMWPEGVPTSDPVQDILHWTRETMAMMYKLIGEAIQESGQVGHPRDFLNFFCLATREEKKSN 560 (737)
Q Consensus 481 ~ia~~~~~g~~v~V~IvlP~~p~g~~~~~~~~~i~~~~~~t~~~~~~~~~~~L~~~gv~~~p~~yl~~~~l~~~~~~~~~ 560 (737)
+|++|++++++|+|+||+|++|+|.+++.++|+|++||++||+|||.++.++|+++|.+.+|+|||+||||+||+.. ..
T Consensus 502 kI~~kir~~e~f~V~IViP~~PeG~~e~~~vq~il~wq~~TM~~~y~~I~~~L~~~g~~~~P~dYl~F~cL~n~e~~-~~ 580 (758)
T PLN02352 502 KIASKIRAKERFAVYILIPMWPEGVPESEPVQDILHWTRETMAMMYKLIGEAIQESGEPGHPRDYLNFFCLANREEK-RK 580 (758)
T ss_pred HHHHHHhCCCCCEEEEEECCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCccCChhHheeeecccccccc-cC
Confidence 99999999999999999999999999999999999999999999999999999999987789999999999999976 55
Q ss_pred CcccCCCCCCCCchhHHhhhccccceeeeeeEEEEeceEEEEeccCCCccccCCCCCcceEEEEecCCCCCcc-hhhHHH
Q 004680 561 GEFVPPYSPHPMTQYWNAQMHRRFMVYVHSKLMIVDDVYLLIGSANINQRSMDGQRDTEIAIGCYQLPKNDDQ-NSEDIS 639 (737)
Q Consensus 561 ~~~~~~~~p~~~~~~~~~~~~r~~~iyvHSK~mIVDD~~~~IGSaNin~RS~~~~~DsEi~v~i~d~~~~~~~-~~~~~~ 639 (737)
++|.+...|...+.|+.+|++|+++||||||+|||||++++|||||||+|||.|+|||||+|++++++..... .+++++
T Consensus 581 g~~~~~~~p~~~~~~~~~~~~rr~~IYVHSKlMIVDD~~viIGSANIN~RSM~G~rDSEia~~~~~~~~~~~~~~~~~i~ 660 (758)
T PLN02352 581 GEFVPPYSPHQKTQYWNAQKNRRFMVYVHSKLMIVDDTYILIGSANVNQRSMDGCRDTEIAIGCYQSKNGTNTNNPRDIQ 660 (758)
T ss_pred CccccccCCCCCchhhhcccccceeEEEeeeEEEEcCcEEEEcccccccccccCcccchhhhcccccccCCCcccchHHH
Confidence 7787766777788889999999999999999999999999999999999999999999999999998865322 669999
Q ss_pred HHHHHHHHHhcCCCcccccCCCcHHHHHHHHHhHHhhcccccCCcccCCCCCceeeccCccCCCCCcccc-CCCcCCCCC
Q 004680 640 AYRLSLWYEHTGLAEGLFREPESLECVQKICSIGDEMWNIYSGEEVVDMDGVHLVTYPVNVTPDGLIEDL-VDEGGNFPD 718 (737)
Q Consensus 640 ~lR~~Lw~ehlG~~~~~~~~p~~~~~~~~~~~~a~~n~~~~~~~~~~~~~g~~L~~~p~~~~~~~~~~~~-~~~~~~~p~ 718 (737)
+||++||+||||+.++.|.+|+|+||++++|++|++||++|+++++.+|+|+|||+||+.|++||+|++| | |+|+|||
T Consensus 661 ~~R~~L~~EHLG~~~~~f~~p~s~ec~~~v~~~~~~~w~~y~~~~~~~~~g~hl~~yp~~v~~~g~v~~l~~-g~~~fpd 739 (758)
T PLN02352 661 AYRMSLWYEHTGLDEESFLEPESLECVRRLRTIGEQMWEIYSGEEVVDMEGVHLVNYPISVTKDGAVEDLAD-GDGNFPD 739 (758)
T ss_pred HHHHHHHHHHhCCCHHHhcCCCCHHHHHHHHHHHHHHHHhhccchhccCCCcccccCCeEecCCcceeecCC-CCcCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999 7 9999999
Q ss_pred CCCCcccccCCCCCCCCCC
Q 004680 719 TKTPVKGKRSKVLPPICTT 737 (737)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~ 737 (737)
|+|+|||++|..||++|||
T Consensus 740 ~~~~v~g~~~~~~p~~lt~ 758 (758)
T PLN02352 740 TKTPVKGRRSKMLPPVFTT 758 (758)
T ss_pred CCCceeccccccCCccccC
Confidence 9999999999999999997
|
|
| >PLN02270 phospholipase D alpha | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-179 Score=1521.39 Aligned_cols=721 Identities=45% Similarity=0.828 Sum_probs=671.4
Q ss_pred CCCCcEEEEEECCEEEeecc---C-CCCCeEeEEEEEEcCCCc-eEEEEEEecCC--CcccEEEEeehhhhhcccccccc
Q 004680 9 NGKPTYVTIKIDNKKVAKTS---H-EHDRVWNQTFQILCAHPA-DATITITLKTK--CSVLGKIHIQALQILNEASLISG 81 (737)
Q Consensus 9 ~~~DPYv~v~l~~~~~~rTk---~-~~nP~WnE~F~~~~~~~~-~l~~~V~D~d~--d~~iG~~~ipl~~l~~~g~~~d~ 81 (737)
++|||||+|+|++++|+||+ | ..||+|||+|+|+|+|.+ .|+|+|||+|. +++||.++||+++|+ +|+.++.
T Consensus 45 ~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~ah~~~~v~f~vkd~~~~g~~~ig~~~~p~~~~~-~g~~i~~ 123 (808)
T PLN02270 45 GESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCAHMASNIIFTVKDDNPIGATLIGRAYIPVEEIL-DGEEVDR 123 (808)
T ss_pred CCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeeccCcceEEEEEecCCccCceEEEEEEEEHHHhc-CCCcccc
Confidence 68999999999999999999 4 479999999999999999 99999999998 999999999999999 9999999
Q ss_pred eEecccCCCCCC-CCccEEEEEeccCCCccccccccccCCCcccCCCCCcccccCceeEEeeccCCCCCCCCCCcCCCC-
Q 004680 82 FFPLEMENGKPN-PDLRLRFMLWFKPAAYEPTWGKIISNGEFQGLRNASFPQRSNCHVKLYHDAHHSSSFEPPYDLCGS- 159 (737)
Q Consensus 82 w~~L~~~~~k~~-~~~~l~l~l~f~~~~~~~~w~~g~~~~~~~~~~~~~~p~~~gn~v~ly~dg~~~~~f~p~~~~~~~- 159 (737)
||+|++.+|||+ ++++|||+|+|+|+.+++.|++||++++|.|||++|||+|+||+||||||+|++++|+|.|+|+||
T Consensus 124 ~~~~~~~~~~p~~~~~~~~~~~~f~~~~~~~~~~~gv~~~~~~gvp~t~f~~r~g~~vtlyqdahv~~~~~p~i~l~~g~ 203 (808)
T PLN02270 124 WVEILDNDKNPIHGGSKIHVKLQYFEVTKDRNWGRGIRSAKFPGVPYTFFSQRQGCKVSLYQDAHIPDNFVPKIPLAGGK 203 (808)
T ss_pred EEeccCCCCCcCCCCCEEEEEEEEEEcccCcchhcccCCcCcCCCCCcccccCCCCeeEEeccccCCCCCCCccccCCCc
Confidence 999999999999 668999999999999999999999999999999999999999999999999999999999999988
Q ss_pred ---chhHHHHHHHHHHccccEEEEEEeecCCceEEeeCCchhhccchHHHHHHHHHHHHHcCCeEEEEEeCCCCCccccc
Q 004680 160 ---PGKLWEDVYKAIEGAKHLIYIAGWSLNPKMVLVRDSQTEIAHARGVQLGELLKHKAEEGVAVRIMLWDDETSLPIIK 236 (737)
Q Consensus 160 ---~~~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~L~r~~~~~~~~~~~~~l~~lL~~kA~rGV~VriLvwD~~~s~~~~~ 236 (737)
+..||+++++||.+|||+|||++|+|+|+++|+|++..+.|+ ...+|+++|++||++||+|+||+||+.++..+++
T Consensus 204 ~~~~~~cwedi~~AI~~Ar~~IyI~GW~~d~~i~LvRd~~~p~~~-~~~~LGeLLk~KA~eGV~V~iLvWDd~ts~~~~k 282 (808)
T PLN02270 204 NYEPHRCWEDVFDAITNAKHLIYITGWSVYTEISLVRDSRRPKPG-GDVTIGELLKKKASEGVRVLLLVWDDRTSVDLLK 282 (808)
T ss_pred ccchhhhHHHHHHHHHhhhcEEEEEEeecCCCceEecCCCCCCCC-CcchHHHHHHHHhcCCCEEEEEEEcCcccchhhc
Confidence 899999999999999999999999999999999986644444 4679999999999999999999999998877777
Q ss_pred cccccccccHHHHHHHhcCCcEEEEcCCCCC---------CCCccccCccceEEecCCCcC-cccccceEEEEccccCCC
Q 004680 237 NKGVMRTHDEDAFAYFKHTKVICKLCPRLHH---------KFPTLFAHHQKTITVDARAQD-SIFDREIMSFVGGLDLCD 306 (737)
Q Consensus 237 ~~g~~~~~~~~~~~~l~~~gv~v~~~~r~~~---------~~~~~~~hHqK~vVVD~~~~~-~~~~~~~vAfvGG~nL~~ 306 (737)
..|+|.||+++++++|++++|+|++++|+|+ .+++.++||||+||||++.|+ +.++|+++|||||+|||+
T Consensus 283 ~~g~m~thd~~t~~~f~~~~V~~~L~~r~P~~~~~~~~~~~~~~~~SHHQKiVVID~~~~~~~~~~r~iVAFVGGIDLc~ 362 (808)
T PLN02270 283 KDGLMATHDEETENFFRGTDVHCILCPRNPDDGGSIVQDLQISTMFTHHQKIVVVDSEMPNGGSQRRRIVSFVGGIDLCD 362 (808)
T ss_pred cccccccCHHHHHHHhccCCceEEEcCCCcccccceeeccccccccccceeEEEEccCCccccccccceEEEEcceeccC
Confidence 7899999999999999999999999999885 346789999999999998665 346899999999999999
Q ss_pred CCcCCCCCcccccCCCCcccCccccccccCcccCCCCCCCCceeccceeeCHHHHHHHHHHHHHhhhccCCCCCcCCCCC
Q 004680 307 GRYDTEKHSLFQTLNSESHCFDFYQINIAGASLHKGGPREPWHDVHACITGEAAWDVLTNFEQRWTKQCDPSLLVPISSI 386 (737)
Q Consensus 307 ~r~Dt~~H~l~~~l~~~~~~~d~~~~~~~g~~~~~~~~~~pWhDv~~~v~Gpav~dl~~~F~~rW~~~~~~~~~~~~~~~ 386 (737)
+||||++|++|++|++ .|++||+||+|.+++++.++||+||||+|++|+||||++|+.+|++||+.++++.++....++
T Consensus 363 GRWDT~~H~lf~~Ldt-~h~~Df~~p~~~~~~~~~g~Pr~PWhDvh~rVeGPaa~dL~~~F~~rW~~atg~~ll~~~~~~ 441 (808)
T PLN02270 363 GRYDTPFHSLFRTLDT-AHHDDFHQPNFTGASITKGGPREPWHDIHSRLEGPIAWDVLFNFEQRWSKQGGKDILVQLREL 441 (808)
T ss_pred CcccCccccccccccc-cccccccCcccccccccCCCCCCCeEEEEEEEECHHHHHHHHHHHHHHHhhcCccchhhhccc
Confidence 9999999999999998 899999999999887788999999999999999999999999999999999987765544444
Q ss_pred CCCCCCCCCCCCCCCCCCCCeeeEEEeecCccchhhhccC--------------ccchhHHHHHHHHHHHhccceEEEee
Q 004680 387 PNLGHKSNIIPSSNYFNQRNWKVQVFRSIDHVSASQLAKN--------------LTVERSIHEAYVEAIRKAERFIYIEN 452 (737)
Q Consensus 387 ~~~~~p~~~~~~~~~~~~~~~~vqv~rs~~~~~~~~~p~~--------------~~~~~sI~~ayl~aI~~A~~~IyIEn 452 (737)
+.+..|+. +...|++.++|+||+|||++.+++++||+. ...++||+.+|++||++|||||||||
T Consensus 442 ~~~~~P~~--~~~~p~d~~~w~VQvfRSid~g~a~~~P~~~~~~~~~~lv~g~~~~~~rsI~~aYi~AI~~A~~~IYIEN 519 (808)
T PLN02270 442 EDVIIPPS--PVMFPDDHEVWNVQLFRSIDGGAAFGFPETPEAAAEAGLVSGKDNIIDRSIQDAYIHAIRRAKDFIYIEN 519 (808)
T ss_pred ccccCCCC--cccCCCcCCccccceeecccchhhccCCCCcchhhhcceeccCCCchhhHHHHHHHHHHHhhhhEEEeeh
Confidence 44444443 334456788999999999999999999831 22479999999999999999999999
Q ss_pred ccccCCccccccc----ccCCCCCccHHHHHHHHHHHHHcCCCcEEEEEecCCCCCCCCCCcchhhhhhHHHhHHHHHHH
Q 004680 453 QYFIGGCQLWEKD----KHCGCRNLIPIEIALKVVSKIKAKERFAVYILIPMWPEGVPTSDPVQDILHWTRETMAMMYKL 528 (737)
Q Consensus 453 qYFi~~~~~w~~~----~~~~~~n~i~~~la~~ia~~~~~g~~v~V~IvlP~~p~g~~~~~~~~~i~~~~~~t~~~~~~~ 528 (737)
|||++++++|+++ ++.++.|+||++|++||+++++++++|+|+||+|+||+|++++.++|+||+||++||+|||.+
T Consensus 520 QYF~sss~~w~~~~~~~~~~~~~nlIp~el~~kI~~ri~~~e~f~VyIViP~~peG~~e~~~vq~il~wq~~TM~~~~~~ 599 (808)
T PLN02270 520 QYFLGSSFAWSADGIKPEDINALHLIPKELSLKIVSKIEAGEKFTVYVVVPMWPEGIPESGSVQAILDWQRRTMEMMYKD 599 (808)
T ss_pred hhhhhhhhhhcccccccccccccccchHHHHHHHHHHHhCCCCCEEEEEECCCCCCCcccchHHHHHHHHHHHHHHHHHH
Confidence 9999999999866 788999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCCcCceEEeeccchhhhccCCcccCCCCCCCCchhHHhhhccccceeeeeeEEEEeceEEEEeccCCC
Q 004680 529 IGEAIQESGQVGHPRDFLNFFCLATREEKKSNGEFVPPYSPHPMTQYWNAQMHRRFMVYVHSKLMIVDDVYLLIGSANIN 608 (737)
Q Consensus 529 ~~~~L~~~gv~~~p~~yl~~~~l~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~iyvHSK~mIVDD~~~~IGSaNin 608 (737)
++++|+++|+..+|+|||+||||+|||.. ..++|.|...|..+++|..+|++|++|||||||+|||||+|++|||||||
T Consensus 600 I~~~Lk~~g~~~dp~dyL~ff~L~nre~~-~~g~~~P~~~~~~~~~~~~aq~~rr~~I~vH~K~~ivDd~~~~iGSaN~n 678 (808)
T PLN02270 600 VIQALRAKGLEEDPRNYLTFFCLGNREVK-KSGEYEPSEKPEPDTDYIRAQEARRFMIYVHTKMMIVDDEYIIIGSANIN 678 (808)
T ss_pred HHHHHHHcCccCCccceEEEEeccccccc-cCcccCCccCCcccchhhhhhhccceeEEEeeeEEEEcCCEEEEeccccc
Confidence 99999999987789999999999999976 56889887788888899999999999999999999999999999999999
Q ss_pred ccccCCCCCcceEEEEecCCCC-Ccc-hhhHHHHHHHHHHHHhcCCCcccccCCCcHHHHHHHHHhHHhhcccccCCcc-
Q 004680 609 QRSMDGQRDTEIAIGCYQLPKN-DDQ-NSEDISAYRLSLWYEHTGLAEGLFREPESLECVQKICSIGDEMWNIYSGEEV- 685 (737)
Q Consensus 609 ~RS~~~~~DsEi~v~i~d~~~~-~~~-~~~~~~~lR~~Lw~ehlG~~~~~~~~p~~~~~~~~~~~~a~~n~~~~~~~~~- 685 (737)
+|||.|+|||||+|.+++|.+. ++. ++++|++||++||+||||+.++.|.+|+|+||+++||++|++||++|+++++
T Consensus 679 ~rS~~G~rDSEIam~a~qp~~~~~~~~~r~~i~~~R~~Lw~EHLG~~~~~f~~p~s~~cv~~v~~~a~~~w~~y~~~~~~ 758 (808)
T PLN02270 679 QRSMDGARDSEIAMGGYQPYHLSTRQPARGQIHGFRMSLWYEHLGMLDETFLDPESEECIQKVNQIADKYWDLYSSETLE 758 (808)
T ss_pred cccccCCccchhhhcccCccccccccchHHHHHHHHHHHHHHHhCCChhHhhCCCcHHHHHHHHHHHHHHHHHhcccccC
Confidence 9999999999999999999766 333 7899999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCceeeccCccCCCCCccccCCCcCCCCCCCCCcccccCCCCCCCCCC
Q 004680 686 VDMDGVHLVTYPVNVTPDGLIEDLVDEGGNFPDTKTPVKGKRSKVLPPICTT 737 (737)
Q Consensus 686 ~~~~g~~L~~~p~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 737 (737)
.+|+| |||+||+.|++||+|++|| |+|+||||+|+|||++|.+||++|||
T Consensus 759 ~~~~g-hl~~yp~~v~~~g~v~~l~-g~~~fpd~~~~v~g~~~~~~p~~ltt 808 (808)
T PLN02270 759 HDLPG-HLLRYPIGVASEGDITELP-GTEFFPDTKARVLGAKSDYLPPILTT 808 (808)
T ss_pred CCCCc-ccccCceEecCCCcEeeCC-CCCcCCCCCCceeccccccCCccccC
Confidence 67999 9999999999999999999 99999999999999999999999997
|
|
| >PLN03008 Phospholipase D delta | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-177 Score=1502.66 Aligned_cols=713 Identities=42% Similarity=0.732 Sum_probs=652.2
Q ss_pred cCCCCcEEEEEECCEEEeecc---CCCCCeEeEEEEEEcCCCc-eEEEEEEecCC--CcccEEEEeehhhhhcccccccc
Q 004680 8 VNGKPTYVTIKIDNKKVAKTS---HEHDRVWNQTFQILCAHPA-DATITITLKTK--CSVLGKIHIQALQILNEASLISG 81 (737)
Q Consensus 8 ~~~~DPYv~v~l~~~~~~rTk---~~~nP~WnE~F~~~~~~~~-~l~~~V~D~d~--d~~iG~~~ipl~~l~~~g~~~d~ 81 (737)
.++|||||+|.|++++++||| |++||+|||+|+|+|+|++ .|+|+|||+|. +++||+++|||++|. .|+.++.
T Consensus 74 ~~tSDPYV~I~Lg~~rv~RTrVi~n~~NPvWNE~F~f~vah~~s~L~f~VkD~D~~gaD~IG~a~IPL~~L~-~Ge~vd~ 152 (868)
T PLN03008 74 VITSDPYVTVVVPQATLARTRVLKNSQEPLWDEKFNISIAHPFAYLEFQVKDDDVFGAQIIGTAKIPVRDIA-SGERISG 152 (868)
T ss_pred cCCCCceEEEEECCcceeeEEeCCCCCCCCcceeEEEEecCCCceEEEEEEcCCccCCceeEEEEEEHHHcC-CCCceEE
Confidence 368999999999999999998 8999999999999999998 99999999998 999999999999999 9999999
Q ss_pred eEecccCCCCCC-CCccEEEEEeccCCCccccccccccC-CCcccCCCCCcccccCceeEEeeccCCCCCCCCCCcCCCC
Q 004680 82 FFPLEMENGKPN-PDLRLRFMLWFKPAAYEPTWGKIISN-GEFQGLRNASFPQRSNCHVKLYHDAHHSSSFEPPYDLCGS 159 (737)
Q Consensus 82 w~~L~~~~~k~~-~~~~l~l~l~f~~~~~~~~w~~g~~~-~~~~~~~~~~~p~~~gn~v~ly~dg~~~~~f~p~~~~~~~ 159 (737)
|++|++.++||+ ++++|||+|+|+|+.+++.|++||++ |+|.|||++|||+|+||+||||||+|++++|+|.|.|+||
T Consensus 153 Wl~Ll~~~~kp~k~~~kl~v~lqf~pv~~~~~~~~gv~~~~~~~gvp~t~Fp~r~g~~VtlYqdAhv~d~~~p~i~l~~g 232 (868)
T PLN03008 153 WFPVLGASGKPPKAETAIFIDMKFTPFDQIHSYRCGIAGDPERRGVRRTYFPVRKGSQVRLYQDAHVMDGTLPAIGLDNG 232 (868)
T ss_pred EEEccccCCCCCCCCcEEEEEEEEEEccccccccccccCCcCCCCCCCccccCCCCCEeEEeccCCCCCCCCCccccCCC
Confidence 999999999998 67899999999999999999999977 5999999999999999999999999999999999999998
Q ss_pred ----chhHHHHHHHHHHccccEEEEEEeecCCceEEeeCCchhhccchHHHHHHHHHHHHHcCCeEEEEEeCCCCCcc-c
Q 004680 160 ----PGKLWEDVYKAIEGAKHLIYIAGWSLNPKMVLVRDSQTEIAHARGVQLGELLKHKAEEGVAVRIMLWDDETSLP-I 234 (737)
Q Consensus 160 ----~~~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~L~r~~~~~~~~~~~~~l~~lL~~kA~rGV~VriLvwD~~~s~~-~ 234 (737)
+..||++|++||++||++|||++|+++|+++|+|++. .|++.+.+|++||++||+|||+|+|||||+.+|.. +
T Consensus 233 ~~y~~~rcwedi~~AI~~Ak~~IyI~gWsl~~ei~L~R~~~--~~~~~~~~Lg~LLk~KA~eGVrV~ilvwdd~ts~~~~ 310 (868)
T PLN03008 233 KVYEHGKCWEDICYAISEAHHMIYIVGWSIFHKIKLVRETK--VPRDKDMTLGELLKYKSQEGVRVLLLVWDDKTSHDKF 310 (868)
T ss_pred ccccccccHHHHHHHHHhhhheEEEeceeecceeEEecCCC--CCCCCCccHHHHHHHHHHCCCEEEEEEeccccccccc
Confidence 7999999999999999999999999999999999975 23334789999999999999999999999999863 2
Q ss_pred -cccccccccccHHHHHHHhcCCcEEEEcCCCCC--------------------CCCccccCccceEEecCCCcCccccc
Q 004680 235 -IKNKGVMRTHDEDAFAYFKHTKVICKLCPRLHH--------------------KFPTLFAHHQKTITVDARAQDSIFDR 293 (737)
Q Consensus 235 -~~~~g~~~~~~~~~~~~l~~~gv~v~~~~r~~~--------------------~~~~~~~hHqK~vVVD~~~~~~~~~~ 293 (737)
++..|+|.||++++.++|++++|.|.+||+++. ..+++++||||+||||++.++ ++|
T Consensus 311 ~~~~~g~m~thdeet~~~f~h~~v~~~l~pr~~~~~~~~~~~~~~~~~~iy~~~~~~~~~sHHQK~VVID~~~~~--~~r 388 (868)
T PLN03008 311 GIKTPGVMGTHDEETRKFFKHSSVICVLSPRYASSKLGLFKQQASPIFSIYVMTVVGTLFTHHQKCVLVDTQAVG--NNR 388 (868)
T ss_pred ccccccccccccHHHHHhhcCCCeeEEECCCccccccchhhccccccccccccccccccccccceEEEEccCCCC--Ccc
Confidence 577899999999999999999999999998743 124779999999999997554 479
Q ss_pred ceEEEEccccCCCCCcCCCCCcccccCCCCcccCccccccccCcccCCCCCCCCceeccceeeCHHHHHHHHHHHHHhhh
Q 004680 294 EIMSFVGGLDLCDGRYDTEKHSLFQTLNSESHCFDFYQINIAGASLHKGGPREPWHDVHACITGEAAWDVLTNFEQRWTK 373 (737)
Q Consensus 294 ~~vAfvGG~nL~~~r~Dt~~H~l~~~l~~~~~~~d~~~~~~~g~~~~~~~~~~pWhDv~~~v~Gpav~dl~~~F~~rW~~ 373 (737)
+++|||||+|||++||||++|++|+++++ .|++||+||++++ ..++|++||||+|++|+||||++|+.+|.+||++
T Consensus 389 ~~vAFvGGiDLc~gRwDT~~H~l~~~l~t-~~~~D~~np~~~~---~~~~p~~PWHDvh~rVeGPaV~dL~~~F~qRW~~ 464 (868)
T PLN03008 389 KVTAFIGGLDLCDGRYDTPEHRILHDLDT-VFKDDFHNPTFPA---GTKAPRQPWHDLHCRIDGPAAYDVLINFEQRWRK 464 (868)
T ss_pred ceEEEEcceeccCCccCCcCCCccccccc-cccccccCccccC---CCCCCCCCeEEEEEEEECHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999987 8889999998865 3567899999999999999999999999999999
Q ss_pred ccCC---------------CCCcCCCCCCCCCCCCCC------------CCCCC---CCCCCCeeeEEEeecCccchhhh
Q 004680 374 QCDP---------------SLLVPISSIPNLGHKSNI------------IPSSN---YFNQRNWKVQVFRSIDHVSASQL 423 (737)
Q Consensus 374 ~~~~---------------~~~~~~~~~~~~~~p~~~------------~~~~~---~~~~~~~~vqv~rs~~~~~~~~~ 423 (737)
+++. +.++...++.+++.|+.. .+... .+++++|.+|+|||++.|++++|
T Consensus 465 aTg~~~~~~~~k~~~~~~~d~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~w~vQifRSId~~sa~g~ 544 (868)
T PLN03008 465 ATRWKEFSLRLKGKTHWQDDALIRIGRISWILSPVFKFLKDGTSIIPEDDPCVWVSKEDDPENWHVQIFRSIDSGSVKGF 544 (868)
T ss_pred hhCccccccccccccccccchhcchhhcccccCCCccccccccccccCCCCccCccccCCCCccccceeeecCchhhcCC
Confidence 9873 233344455554444210 01011 14668999999999999999999
Q ss_pred c--------------cCccchhHHHHHHHHHHHhccceEEEeeccccCCcccccccccCCCCCccHHHHHHHHHHHHHcC
Q 004680 424 A--------------KNLTVERSIHEAYVEAIRKAERFIYIENQYFIGGCQLWEKDKHCGCRNLIPIEIALKVVSKIKAK 489 (737)
Q Consensus 424 p--------------~~~~~~~sI~~ayl~aI~~A~~~IyIEnqYFi~~~~~w~~~~~~~~~n~i~~~la~~ia~~~~~g 489 (737)
| ++..+|+||++||++||++||||||||||||++++++|+++++.++.|+||++|+++|+++++++
T Consensus 545 P~~~~~~~~~~l~~gk~~~ie~SIq~aYi~aIr~A~hFIYIENQYFiss~~~w~~~~~~~~~n~I~~eia~kI~~ki~~~ 624 (868)
T PLN03008 545 PKYEDEAEAQHLECAKRLVVDKSIQTAYIQTIRSAQHFIYIENQYFLGSSYAWPSYRDAGADNLIPMELALKIVSKIRAK 624 (868)
T ss_pred CCCcchhhhhccccccccchhhhHHHHHHHHHHhhccEEEEehhhhhccccccccccccccccchhHHHHHHHHHHHhCC
Confidence 8 46678999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEecCCCCCCCCCCcchhhhhhHHHhHHHHHHHHHHHHHhcCCCCCCcCceEEeeccchhhhccCCcccCCCCC
Q 004680 490 ERFAVYILIPMWPEGVPTSDPVQDILHWTRETMAMMYKLIGEAIQESGQVGHPRDFLNFFCLATREEKKSNGEFVPPYSP 569 (737)
Q Consensus 490 ~~v~V~IvlP~~p~g~~~~~~~~~i~~~~~~t~~~~~~~~~~~L~~~gv~~~p~~yl~~~~l~~~~~~~~~~~~~~~~~p 569 (737)
++|+|+||+|++|+|.|+++++|+|++|+++||+|||.+++++|+++|.+.+|+|||+||||||||.. .+...+
T Consensus 625 e~f~V~IViP~~peG~~~sg~vq~Il~wq~~TM~~~~~~I~~~L~~~~~d~~p~dyl~fy~L~~~e~~------~~~~~~ 698 (868)
T PLN03008 625 ERFAVYVVIPLWPEGDPKSGPVQEILYWQSQTMQMMYDVIAKELKAVQSDAHPLDYLNFYCLGKREQL------PDDMPA 698 (868)
T ss_pred CCCEEEEEECCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccCEEEEecccccccc------cCCCCC
Confidence 99999999999999999999999999999999999999999999999887789999999999999865 112234
Q ss_pred CCCchhHHhhhccccceeeeeeEEEEeceEEEEeccCCCccccCCCCCcceEEEEecCCCC-C--cc-hhhHHHHHHHHH
Q 004680 570 HPMTQYWNAQMHRRFMVYVHSKLMIVDDVYLLIGSANINQRSMDGQRDTEIAIGCYQLPKN-D--DQ-NSEDISAYRLSL 645 (737)
Q Consensus 570 ~~~~~~~~~~~~r~~~iyvHSK~mIVDD~~~~IGSaNin~RS~~~~~DsEi~v~i~d~~~~-~--~~-~~~~~~~lR~~L 645 (737)
..++.+..+|++||+|||||||+|||||++++|||||||+|||.++||||+++.++++.+. + ++ ++++|++||++|
T Consensus 699 ~~~~~~~~a~~~rr~~IYvHsK~~ivDd~~~~iGSaN~n~RS~~~~Rd~E~~~~~~~~~~~~~~~~~~~rg~I~g~R~sL 778 (868)
T PLN03008 699 TNGSVVSDSYNFQRFMIYVHAKGMIVDDEYVLMGSANINQRSMAGTKDTEIAMGAYQPNHTWAHKGRHPRGQVYGYRMSL 778 (868)
T ss_pred CCCchhhhhhhccceeEEEeeeEEEECCCEEEEeccccCHhhccCCCCceEeEEeccccccccccCcchhhHHHHHHHHH
Confidence 4567788899999999999999999999999999999999999999999999999999887 2 33 899999999999
Q ss_pred HHHhcCCCcccccCCCcHHHHHHHHHhHHhhcccccCCcccCCCCCceeeccCccCCCCCccccCCCcCCCCCCCCCccc
Q 004680 646 WYEHTGLAEGLFREPESLECVQKICSIGDEMWNIYSGEEVVDMDGVHLVTYPVNVTPDGLIEDLVDEGGNFPDTKTPVKG 725 (737)
Q Consensus 646 w~ehlG~~~~~~~~p~~~~~~~~~~~~a~~n~~~~~~~~~~~~~g~~L~~~p~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 725 (737)
|+||||+.++.|.+|+|+||+++||++|++||++|+++++.+|+| |||+||+.|++||+|++|| |+|+||||+|+|||
T Consensus 779 waEHLG~~~~~~~~p~s~ecv~~vn~~a~~~w~~y~~~~~~~~~g-hl~~yp~~v~~~g~v~~l~-g~~~fpd~~~~v~g 856 (868)
T PLN03008 779 WAEHLGKTGDEFVEPSDLECLKKVNTISEENWKRFIDPKFSELQG-HLIKYPLQVDVDGKVSPLP-DYETFPDVGGKIIG 856 (868)
T ss_pred HHHHhCCCHHHccCCCCHHHHHHHHHHHHHHHHHhhccccccCCc-ccccCceEecCCCcEeeCC-CCCcCCCCCCceec
Confidence 999999999999999999999999999999999999999999999 9999999999999999999 99999999999999
Q ss_pred ccCCCCCCCCCC
Q 004680 726 KRSKVLPPICTT 737 (737)
Q Consensus 726 ~~~~~~~~~~~~ 737 (737)
++|.+||++|||
T Consensus 857 ~~~~~lp~~ltt 868 (868)
T PLN03008 857 AHSMALPDTLTT 868 (868)
T ss_pred cccccCCccccC
Confidence 999999999997
|
|
| >KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-147 Score=1245.48 Aligned_cols=674 Identities=43% Similarity=0.694 Sum_probs=615.8
Q ss_pred CCcEEEEEECCEEEeecc---CC-CCCeEeEEEEEEcCCCc-eEEEEEEecCC---CcccEEEEeehhhhhcccccccce
Q 004680 11 KPTYVTIKIDNKKVAKTS---HE-HDRVWNQTFQILCAHPA-DATITITLKTK---CSVLGKIHIQALQILNEASLISGF 82 (737)
Q Consensus 11 ~DPYv~v~l~~~~~~rTk---~~-~nP~WnE~F~~~~~~~~-~l~~~V~D~d~---d~~iG~~~ipl~~l~~~g~~~d~w 82 (737)
+++|+++.|....+.+|+ +. .+|.|+++|++.++|.. .+.|+|++.+. ...+|.+++|+..+. +|..++.|
T Consensus 138 ~e~Ylt~~l~~~~~~~t~~~~~f~e~s~~~f~~~~~~~h~~g~v~~~~~~~~~~G~s~~w~~v~~s~~~~~-~~~~~~~~ 216 (887)
T KOG1329|consen 138 LENYLTVVLHKARYRRTHVIYEFLENSRWSFSFDIGFAHKAGYVIFRVKGARVPGWSKRWGRVKISFLQYC-SGHRIGGW 216 (887)
T ss_pred ccchheeeechhhhhchhhhhcccccchhhhhccccccccccEEEEeecCCccccceeEEEEeccchhhhh-ccccccce
Confidence 699999999999999998 44 99999999999999999 99999999997 899999999999999 89999999
Q ss_pred EecccCCCCCC-CCccEEEEEeccCCCccccccccccC-CCcccCCCCCcccccCceeEEeeccCCCCCCCCCCcCCCC-
Q 004680 83 FPLEMENGKPN-PDLRLRFMLWFKPAAYEPTWGKIISN-GEFQGLRNASFPQRSNCHVKLYHDAHHSSSFEPPYDLCGS- 159 (737)
Q Consensus 83 ~~L~~~~~k~~-~~~~l~l~l~f~~~~~~~~w~~g~~~-~~~~~~~~~~~p~~~gn~v~ly~dg~~~~~f~p~~~~~~~- 159 (737)
+++++.++++. +...++++++|+++.++..|..++.+ ++|.|++.++||++.||.|++|+|+|++++|+|.++++++
T Consensus 217 ~~Il~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~r~~~~~~~~~~~g~gv~~~qd~Hr~~sf~P~r~~~~~k 296 (887)
T KOG1329|consen 217 FPILDNDGKPHQKGSNESLRLGFTPMEKDRNLKLGCKSGRSFRGWPGTIFPQRKGCGVTLYQDAHRFDSFAPVRTLDGGK 296 (887)
T ss_pred eeeeccCCccccCCcccceEEeeEeechhhhhhheeccccccCCccceeeehhccCceeeeecccccCCcCCcccCCCce
Confidence 99999999988 66788899999999999999999987 9999999999999999999999999999999999998887
Q ss_pred ----chhHHHHHHHHHHccccEEEEEEeecCCceEEeeCCchhhccchHHHHHHHHHHHHHcCCeEEEEEeCCCCCcccc
Q 004680 160 ----PGKLWEDVYKAIEGAKHLIYIAGWSLNPKMVLVRDSQTEIAHARGVQLGELLKHKAEEGVAVRIMLWDDETSLPII 235 (737)
Q Consensus 160 ----~~~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~L~r~~~~~~~~~~~~~l~~lL~~kA~rGV~VriLvwD~~~s~~~~ 235 (737)
|..||+++++||++||+.|||+|||++|++||+|+...+ .+.+|+++||+||++||+|+|||||++++...
T Consensus 297 w~vd~~~~~edi~dAI~~Ar~~IyItgWwl~pel~L~Rp~~~~----~~~rLdelLK~KAeeGVrV~ilv~kdv~s~~~- 371 (887)
T KOG1329|consen 297 WFVDGKKYWEDVADAIENARREIYITGWWLSPELYLVRPPKGP----NDWRLDELLKRKAEEGVRVLILVWKDVTSALG- 371 (887)
T ss_pred EEEchhhHHHHHHHHHHhhhhEEEEeccccCceEEEEccCCCC----CceEHHHHHHHHHhCCcEEEEEEeccchhccc-
Confidence 899999999999999999999999999999999987642 47899999999999999999999999988743
Q ss_pred ccccccccccHHHHHHHhcCCcEEEEcCCCCCCCC-ccccCccceEEecCCCcCcccccceEEEEccccCCCCCcCCCCC
Q 004680 236 KNKGVMRTHDEDAFAYFKHTKVICKLCPRLHHKFP-TLFAHHQKTITVDARAQDSIFDREIMSFVGGLDLCDGRYDTEKH 314 (737)
Q Consensus 236 ~~~g~~~~~~~~~~~~l~~~gv~v~~~~r~~~~~~-~~~~hHqK~vVVD~~~~~~~~~~~~vAfvGG~nL~~~r~Dt~~H 314 (737)
++++.+++..+++|++|+|.+||+++...+ ++|+||||+||||.+ +|||||+|||+|||||++|
T Consensus 372 -----i~S~~~k~~l~~lH~nV~vlr~P~~~~~~~~~~wtHHeK~VVVD~~----------v~fvGGlDLC~GRYDT~eH 436 (887)
T KOG1329|consen 372 -----INSHYEKTRLFFLHPNVKVLRCPRHPGSGPTTLWTHHEKLVVVDQE----------VAFVGGLDLCDGRYDTPEH 436 (887)
T ss_pred -----cCchhHHHHHhhcCCCeEEEECCCCcCCCCceEEecceEEEEEcce----------eccccceeccccccCCccc
Confidence 347888999999999999999999987664 899999999999999 9999999999999999999
Q ss_pred cccccCCCCcccCccccccccCcc--cCCCCCCCCceeccceeeCHHHHHHHHHHHHHhhhccCCC-----CCcCCCCCC
Q 004680 315 SLFQTLNSESHCFDFYQINIAGAS--LHKGGPREPWHDVHACITGEAAWDVLTNFEQRWTKQCDPS-----LLVPISSIP 387 (737)
Q Consensus 315 ~l~~~l~~~~~~~d~~~~~~~g~~--~~~~~~~~pWhDv~~~v~Gpav~dl~~~F~~rW~~~~~~~-----~~~~~~~~~ 387 (737)
+||+++++ .|++||+||+|++.. .++++|||||||+||+|.||+|+||++||+||||++...+ .+.-+...+
T Consensus 437 ~L~d~~~~-~~gkDy~n~~~~~~~~~dr~~~PRmPWHDvh~~v~G~~ArDvarhF~QRWn~~~~~K~~~~~~~p~L~p~~ 515 (887)
T KOG1329|consen 437 PLFDTLQT-WHGKDYHNPNFKDFVDIDRKGGPRMPWHDVHCKVDGPAARDVARHFEQRWNKQKREKKPYDDSLPLLLPIS 515 (887)
T ss_pred cccccccc-cccccccCcccccchhcccCCCCCCCceeeeeeeeChhHHHHHHHHHHHHHHHhcccCCCCccceeecChh
Confidence 99999998 999999999999865 5789999999999999999999999999999999987521 111111112
Q ss_pred CCCCCCCCCCCCCCCCCCCeeeEEEeecCccchhh----------hccCccchhHHHHHHHHHHHhccceEEEeeccccC
Q 004680 388 NLGHKSNIIPSSNYFNQRNWKVQVFRSIDHVSASQ----------LAKNLTVERSIHEAYVEAIRKAERFIYIENQYFIG 457 (737)
Q Consensus 388 ~~~~p~~~~~~~~~~~~~~~~vqv~rs~~~~~~~~----------~p~~~~~~~sI~~ayl~aI~~A~~~IyIEnqYFi~ 457 (737)
++..|+. ..+++++.|++|++||++++++.+ -.+...+|.||++||+++|++||||||||||||++
T Consensus 516 ~~~~~~~----~~~~~~e~~~~q~f~si~~gs~~~~qvlrs~g~wS~g~~~~e~SIq~AYv~~Ir~a~hFIYIENQfFi~ 591 (887)
T KOG1329|consen 516 DITGPSE----PNEEDPESWHVQVFRSIDGGSVAGPQVLRSAGLWSGGINEIEDSIQNAYVKAIRNAEHFIYIENQFFIG 591 (887)
T ss_pred hhcCCCC----ccccccccccccceeeccCCcccchHHhhhhcccccCCCchHHHHHHHHHHHHHhccceEEEeeeeEEe
Confidence 2222322 234678899999999999887766 22555689999999999999999999999999999
Q ss_pred CcccccccccCCCCCccHHHHHHHHHHHHHcCCCcEEEEEecCCC--CC--CCCCCcchhhhhhHHHhHHHHHHHHHHHH
Q 004680 458 GCQLWEKDKHCGCRNLIPIEIALKVVSKIKAKERFAVYILIPMWP--EG--VPTSDPVQDILHWTRETMAMMYKLIGEAI 533 (737)
Q Consensus 458 ~~~~w~~~~~~~~~n~i~~~la~~ia~~~~~g~~v~V~IvlP~~p--~g--~~~~~~~~~i~~~~~~t~~~~~~~~~~~L 533 (737)
++..|.. ..|.++++||++|++|+++|++|+||||+|+|| || .|+++++|+||+||+|||+|||++++++|
T Consensus 592 ss~~~~~-----~~n~v~~ela~rIv~a~ra~e~frVYIVIPL~PgfEG~~~p~~~svqaIl~wQyrTms~g~~sI~~~L 666 (887)
T KOG1329|consen 592 SSFNWDS-----VLNKVGDELALRIVKAIRAGEKFRVYIVIPLWPGFEGDDTPGSGSVQAILHWQYRTMSMGYKSIYKAL 666 (887)
T ss_pred eccCCCc-----ccchHHHHHHHHHHHHHhcCCceEEEEEEeCCccccCCCCCCcchHHHHHHHHHHHHhhhHHHHHHHH
Confidence 9987753 568899999999999999999999999999999 88 89999999999999999999999999999
Q ss_pred HhcCCC-CCCcCceEEeeccchhhhccCCcccCCCCCCCCchhHHhhhccccceeeeeeEEEEeceEEEEeccCCCcccc
Q 004680 534 QESGQV-GHPRDFLNFFCLATREEKKSNGEFVPPYSPHPMTQYWNAQMHRRFMVYVHSKLMIVDDVYLLIGSANINQRSM 612 (737)
Q Consensus 534 ~~~gv~-~~p~~yl~~~~l~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~iyvHSK~mIVDD~~~~IGSaNin~RS~ 612 (737)
++.|++ .+|.+|++|+|+++++.. +|+.+++|||||||+|||||++++|||||||+|||
T Consensus 667 ka~g~d~~~yi~f~~lr~~g~~e~~--------------------~~~~~~emIYVHsK~mIvDD~~vIIGSANINqRSm 726 (887)
T KOG1329|consen 667 KAVGLDPADYIDFLGLRCLGNREEQ--------------------AQRLRREMIYVHSKLMIVDDEYVIIGSANINQRSM 726 (887)
T ss_pred HHhcCCccccceeeeeeeeeccccc--------------------cccceEEEEEEeeeeEEecCCEEEEeecccchhhc
Confidence 999998 678999999999998631 23567899999999999999999999999999999
Q ss_pred CCCCCcceEEEEecCCCC-C--cc-hhhHHHHHHHHHHHHhcCCCcccccCCCcHHHHHHHHHhHHhhcccccCCcccCC
Q 004680 613 DGQRDTEIAIGCYQLPKN-D--DQ-NSEDISAYRLSLWYEHTGLAEGLFREPESLECVQKICSIGDEMWNIYSGEEVVDM 688 (737)
Q Consensus 613 ~~~~DsEi~v~i~d~~~~-~--~~-~~~~~~~lR~~Lw~ehlG~~~~~~~~p~~~~~~~~~~~~a~~n~~~~~~~~~~~~ 688 (737)
.|+|||||||+++|+.+. + +. +.+|+++|||+||+||||+.++.|++|++++|.+.++.+.+++|..|+++..+.+
T Consensus 727 ~G~RDSEIA~~~~d~~~~~s~m~g~p~~f~~~lR~slw~EHLG~~~d~~~~Pe~~ec~dpv~d~~~~~W~~~a~~n~~~y 806 (887)
T KOG1329|consen 727 LGNRDSEIAMGIYDTNHVWSKMNGRPYGFIYGLRMSLWREHLGLLDDAFEEPESLECEDPVRDLFEDLWQRYAARNTTIY 806 (887)
T ss_pred cCCccceeEEEEecccchhhccCCcchhHHHHHHHHHHHHHhCCCcccccCcchhhhhhhHHHHHHHHHHHHHhhhhhhh
Confidence 999999999999999988 3 33 7799999999999999999999999999999999999999999999999999889
Q ss_pred CCCceeeccCccCCCCCccccCCCcCCCCCCCCCcccccCCCCCCCCCC
Q 004680 689 DGVHLVTYPVNVTPDGLIEDLVDEGGNFPDTKTPVKGKRSKVLPPICTT 737 (737)
Q Consensus 689 ~g~~L~~~p~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 737 (737)
+| ||+.||+++..+|++.++| |.++|||+.|++.|.++..+|++||+
T Consensus 807 ~~-~f~~yP~~~~~~g~~~~~~-~~~~~pd~~~~~~~~~~~~~~~~lt~ 853 (887)
T KOG1329|consen 807 EG-HFRCYPIDVVRTGKVTELP-GDETFPDTLGKIIGSKSDALPENLTT 853 (887)
T ss_pred hc-eEEEcccccccCcceeecC-CccccccccccccccccccCCccccc
Confidence 99 9999999999999999999 99999999999999999999999986
|
|
| >PLN02866 phospholipase D | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-96 Score=853.37 Aligned_cols=605 Identities=29% Similarity=0.428 Sum_probs=448.8
Q ss_pred CCCCCeEeEEE-------EEEcCCCc---eEEEEEEecCC-CcccEEEEeehhhhhcccccccceEecccCCCCCCCCcc
Q 004680 29 HEHDRVWNQTF-------QILCAHPA---DATITITLKTK-CSVLGKIHIQALQILNEASLISGFFPLEMENGKPNPDLR 97 (737)
Q Consensus 29 ~~~nP~WnE~F-------~~~~~~~~---~l~~~V~D~d~-d~~iG~~~ipl~~l~~~g~~~d~w~~L~~~~~k~~~~~~ 97 (737)
...|..|...+ -.++.++. .+.+-|+|.+. ...=|+..+.+.+-.+.-.....-+.+.. +.
T Consensus 212 ~~~~~~w~k~w~v~k~~~l~~~~~p~~~~~~~v~lfD~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~i~~--------~~ 283 (1068)
T PLN02866 212 SCCNDNWQKVWAVLKPGFLALLEDPFDAKPLDIIVFDVLPASNGNGEGQISLAKEIKERNPLRFGFKVTC--------GN 283 (1068)
T ss_pred CeecCchheeEEEEeccEEEEEecCCCCceeEEEEEecccccccCCCcceeecccccccCCCcceEEEec--------Cc
Confidence 45667777644 45565553 77778888776 55556666666544311222333344432 12
Q ss_pred EEEEEeccCCCccccccccccCC------CcccCC--CCCcccc----cCceeEEeeccCCCCCCCCCCcCCCCchhHHH
Q 004680 98 LRFMLWFKPAAYEPTWGKIISNG------EFQGLR--NASFPQR----SNCHVKLYHDAHHSSSFEPPYDLCGSPGKLWE 165 (737)
Q Consensus 98 l~l~l~f~~~~~~~~w~~g~~~~------~~~~~~--~~~~p~~----~gn~v~ly~dg~~~~~f~p~~~~~~~~~~~~~ 165 (737)
=.+.|......+-..|...|..- .|.... .+|+|++ .||++++|.|| +++|+
T Consensus 284 r~l~l~~~s~~~~~~w~~ai~~~~~~~~~~~~~~hRF~SFAP~r~~~~~gN~vk~LvDG----------------~dyF~ 347 (1068)
T PLN02866 284 RSIRLRTKSSAKVKDWVAAINDAGLRPPEGWCHPHRFGSFAPPRGLTEDGSQAQWFIDG----------------HAAFE 347 (1068)
T ss_pred eEEEEEECCHHHHHHHHHHHHHHHhccCccccccCcCCCcCCCccccCCCCEEEEEeCH----------------HHHHH
Confidence 23445544544455676666331 111111 3788988 69999999998 69999
Q ss_pred HHHHHHHccccEEEEEEeecCCceEEeeCCchhhccchHHHHHHHHHHHHHcCCeEEEEEeCCCCCcccccccccccccc
Q 004680 166 DVYKAIEGAKHLIYIAGWSLNPKMVLVRDSQTEIAHARGVQLGELLKHKAEEGVAVRIMLWDDETSLPIIKNKGVMRTHD 245 (737)
Q Consensus 166 ~l~~aI~~Ak~~I~I~~w~~~~~~~L~r~~~~~~~~~~~~~l~~lL~~kA~rGV~VriLvwD~~~s~~~~~~~g~~~~~~ 245 (737)
+|++||++||++|||++|||+|++||+|+.. +..+.+|+++|++||++||+||||+||..+...... .
T Consensus 348 AL~eAIe~AKesI~I~~WwlsPEiYL~Rp~~----D~~g~RL~~lL~rKAkrGVkVrVLLyD~vg~al~~~--------S 415 (1068)
T PLN02866 348 AIASAIENAKSEIFITGWWLCPELYLRRPFH----DHESSRLDSLLEAKAKQGVQIYILLYKEVALALKIN--------S 415 (1068)
T ss_pred HHHHHHHhcccEEEEEEccCCceEEEEecCC----CchHHHHHHHHHHHHHCCCEEEEEEECccccccccC--------c
Confidence 9999999999999999999999999998521 126899999999999999999999999976431111 0
Q ss_pred HHHHHHH--hcCCcEEEEcCCCCCCCCccccCccceEEecCCCcCcccccceEEEEccccCCCCCcCCCCCcccccCCCC
Q 004680 246 EDAFAYF--KHTKVICKLCPRLHHKFPTLFAHHQKTITVDARAQDSIFDREIMSFVGGLDLCDGRYDTEKHSLFQTLNSE 323 (737)
Q Consensus 246 ~~~~~~l--~~~gv~v~~~~r~~~~~~~~~~hHqK~vVVD~~~~~~~~~~~~vAfvGG~nL~~~r~Dt~~H~l~~~l~~~ 323 (737)
..+.+.| .++||+|...|.......+++|||||+||||++ +||+||+|||.+||||++|++.+....-
T Consensus 416 ~~~k~~L~~lh~gI~V~r~P~~~~~~~ln~RhHRKIVVIDg~----------IAFvGGiNLc~GRWDT~~H~l~D~~~~~ 485 (1068)
T PLN02866 416 VYSKRRLLGIHENVKVLRYPDHFSSGVYLWSHHEKLVIVDYQ----------ICFIGGLDLCFGRYDTPEHRVGDCPPVI 485 (1068)
T ss_pred hhhHHHHHHhCCCeEEEecCcccccCcccccCCCCeEEECCC----------EEEecCcccCCCccCCcccccccccccc
Confidence 1122222 368999865543221234689999999999999 9999999999999999999987643322
Q ss_pred cccCccccccccCc---------cc-CCCCCCCCceeccceeeCHHHHHHHHHHHHHhhhccCCC--------CCcCCCC
Q 004680 324 SHCFDFYQINIAGA---------SL-HKGGPREPWHDVHACITGEAAWDVLTNFEQRWTKQCDPS--------LLVPISS 385 (737)
Q Consensus 324 ~~~~d~~~~~~~g~---------~~-~~~~~~~pWhDv~~~v~Gpav~dl~~~F~~rW~~~~~~~--------~~~~~~~ 385 (737)
..++||.|+..... .+ +...||+||||+||+|+||||+||+++|++||+.+++.. +++|...
T Consensus 486 wPGkDY~Npr~~d~~~~~~~~~d~ldR~~~pRmPWHDV~~~V~GpAardLa~hFvqRWN~at~~k~~~~~~~~ll~p~~~ 565 (1068)
T PLN02866 486 WPGKDYYNPRESEPNSWEDTMKDELDRRKYPRMPWHDVHCALWGPPCRDVARHFVQRWNYAKRNKAPNEQAIPLLMPHHH 565 (1068)
T ss_pred cCcccccccccccccccccccccccccccCCCCCceEEEEEEECHHHHHHHHHHHHHHHHHhcccCcccccccccccccc
Confidence 45678877643210 11 345678999999999999999999999999999876532 1111000
Q ss_pred -----------------------------------------CCCCCCCCCC-----------------------------
Q 004680 386 -----------------------------------------IPNLGHKSNI----------------------------- 395 (737)
Q Consensus 386 -----------------------------------------~~~~~~p~~~----------------------------- 395 (737)
++ ++.|.+.
T Consensus 566 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P-~llP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 644 (1068)
T PLN02866 566 MVIPHYLGGSEEEEIESKNQEDNQKGIARQDSFSSRSSLQDIP-LLLPQEADATDGSGGGHKLNGMNSTNGSLSFSFRKS 644 (1068)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccc-cCCCCCcccccccccccccccccccccccccccccc
Confidence 00 0001100
Q ss_pred --------CCC----------------------------------------------CCCCCCCCeeeEEEeecCccchh
Q 004680 396 --------IPS----------------------------------------------SNYFNQRNWKVQVFRSIDHVSAS 421 (737)
Q Consensus 396 --------~~~----------------------------------------------~~~~~~~~~~vqv~rs~~~~~~~ 421 (737)
.|. ..-...++|.+||+||++.|+..
T Consensus 645 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~QivRS~~~WS~G 724 (1068)
T PLN02866 645 KIEPVLPDTPMKGFVDDLGFLDLSVKMSSAERGSKESDSEWWETQERGDQVGSADEVGQVGPRVSCRCQVIRSVSQWSAG 724 (1068)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccCCCCeEEEEEEeecccccCC
Confidence 000 00012356899999999888764
Q ss_pred hhccCccchhHHHHHHHHHHHhccceEEEeeccccCCcccccccccCCCCCccHHHHHHHHHHHHHcCCCcEEEEEecCC
Q 004680 422 QLAKNLTVERSIHEAYVEAIRKAERFIYIENQYFIGGCQLWEKDKHCGCRNLIPIEIALKVVSKIKAKERFAVYILIPMW 501 (737)
Q Consensus 422 ~~p~~~~~~~sI~~ayl~aI~~A~~~IyIEnqYFi~~~~~w~~~~~~~~~n~i~~~la~~ia~~~~~g~~v~V~IvlP~~ 501 (737)
.- ..|+||++||+++|++|+||||||||||+++... +..+.|+|+.+|+++|++|++++++|+|+||+|++
T Consensus 725 ~~----~~E~SI~~AYi~~I~~A~hfIYIENQFFis~~~~-----~~~i~N~I~~AL~~RI~rA~~~~~~frviIViP~~ 795 (1068)
T PLN02866 725 TS----QVEESIHAAYCSLIEKAEHFIYIENQFFISGLSG-----DDTIQNRVLEALYRRILRAHKEKKCFRVIIVIPLL 795 (1068)
T ss_pred CC----chHHHHHHHHHHHHHhcccEEEEecccccccccc-----cccccchHHHHHHHHHHHHHhcCCCeEEEEEecCC
Confidence 21 3699999999999999999999999999998532 34678999999999999999999999999999999
Q ss_pred CC--CCC---CCCcchhhhhhHHHhHHHHHHHHHHHHHhcCCCCCCcCceEEeeccchhhhccCCcccCCCCCCCCchhH
Q 004680 502 PE--GVP---TSDPVQDILHWTRETMAMMYKLIGEAIQESGQVGHPRDFLNFFCLATREEKKSNGEFVPPYSPHPMTQYW 576 (737)
Q Consensus 502 p~--g~~---~~~~~~~i~~~~~~t~~~~~~~~~~~L~~~gv~~~p~~yl~~~~l~~~~~~~~~~~~~~~~~p~~~~~~~ 576 (737)
|+ |.. ++.++++|++||++||++|+.++++.|++++. .+|.||++||||+|++.+...+.+.
T Consensus 796 P~F~G~v~~~~~~svr~Im~~Q~~tI~rG~~Si~~~L~~~~g-~~p~dYisf~~LRn~~~l~~~~~~v------------ 862 (1068)
T PLN02866 796 PGFQGGVDDGGAASVRAIMHWQYRTICRGKNSILHNLYDLLG-PKTHDYISFYGLRAYGRLFEGGPLA------------ 862 (1068)
T ss_pred CCcCCCCCCccchhHHHHHHHHHHHHHhhHHHHHHHHHHHhC-CCHHHeEeeecccccccccCCCccc------------
Confidence 96 333 34689999999999999999999999998532 4689999999999987641111111
Q ss_pred HhhhccccceeeeeeEEEEeceEEEEeccCCCccccCCCCCcceEEEEecCCCC-C---cc---hhhHHHHHHHHHHHHh
Q 004680 577 NAQMHRRFMVYVHSKLMIVDDVYLLIGSANINQRSMDGQRDTEIAIGCYQLPKN-D---DQ---NSEDISAYRLSLWYEH 649 (737)
Q Consensus 577 ~~~~~r~~~iyvHSK~mIVDD~~~~IGSaNin~RS~~~~~DsEi~v~i~d~~~~-~---~~---~~~~~~~lR~~Lw~eh 649 (737)
.++||||||+|||||++++|||||||+|||.|+||||+++++.|++.. + |. +++|+++||++||+||
T Consensus 863 ------teqIYVHsK~~IvDD~~~iiGSaNiN~RS~~G~rDsEia~~~~d~~~~~s~m~G~~~~ag~fa~~lR~~L~~EH 936 (1068)
T PLN02866 863 ------TSQIYVHSKIMIVDDRAALIGSANINDRSLLGSRDSEIGVVIEDKEFVDSSMNGKPWKAGKFAHSLRLSLWSEH 936 (1068)
T ss_pred ------ceeeEEEeeEEEEcCcEEEEccccccccccccCcCcceeeeeecccccccccCCccccccchhHHHHHHHHHHH
Confidence 136999999999999999999999999999999999999999999876 1 32 7899999999999999
Q ss_pred cCCCcc---cccCCCcHHHHHH-HHHhHHhhccccc---------------------C----------------------
Q 004680 650 TGLAEG---LFREPESLECVQK-ICSIGDEMWNIYS---------------------G---------------------- 682 (737)
Q Consensus 650 lG~~~~---~~~~p~~~~~~~~-~~~~a~~n~~~~~---------------------~---------------------- 682 (737)
||+..+ .+.||.+.++++. |+..|.+|.++|. +
T Consensus 937 LG~~~~~~~~~~DP~~d~~~k~~W~~~A~~Nt~Iy~~vF~c~P~d~Vr~~~~~~~~~~~~~~~~gh~~i~lg~~~~~~~~ 1016 (1068)
T PLN02866 937 LGLRAGEIDKIIDPVCDTTYKDLWMATAKTNTDIYQDVFSCIPNDLIHSRAALRQSMASRKEKLGHTTIDLGIAPEKLES 1016 (1068)
T ss_pred hCCCchhhhcccCCccHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccHHHHHHHhhhcccccCccccccccccccccc
Confidence 999753 5789999989965 8999999997761 0
Q ss_pred ------------CcccCCCCCceeeccCccCCCCCcccc
Q 004680 683 ------------EEVVDMDGVHLVTYPVNVTPDGLIEDL 709 (737)
Q Consensus 683 ------------~~~~~~~g~~L~~~p~~~~~~~~~~~~ 709 (737)
+++..++| |||.||+.+.++....|.
T Consensus 1017 ~~~~~~~~~~~~~~l~~I~G-~lV~fPL~Fl~~E~L~p~ 1054 (1068)
T PLN02866 1017 YENGDIKSSDPMERLKSVRG-HLVSFPLDFMCQEDLRPV 1054 (1068)
T ss_pred cccccchhhhHHHHHhhceE-EEEechhhhhhhccCCCC
Confidence 12456899 999999999998776653
|
|
| >PRK12452 cardiolipin synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-52 Score=473.18 Aligned_cols=342 Identities=21% Similarity=0.275 Sum_probs=263.4
Q ss_pred CCcccccCceeEEeeccCCCCCCCCCCcCCCCchhHHHHHHHHHHccccEEEEEEeecCCceEEeeCCchhhccchHHHH
Q 004680 128 ASFPQRSNCHVKLYHDAHHSSSFEPPYDLCGSPGKLWEDVYKAIEGAKHLIYIAGWSLNPKMVLVRDSQTEIAHARGVQL 207 (737)
Q Consensus 128 ~~~p~~~gn~v~ly~dg~~~~~f~p~~~~~~~~~~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~L~r~~~~~~~~~~~~~l 207 (737)
+.+|...||+|++|+|| ++.|++++++|++||++|+|++|+| ++|. .+..+
T Consensus 132 ~~~p~~~~n~~~ll~~g----------------~~~~~~l~~~I~~Ak~~I~i~~yi~-------~~d~------~g~~i 182 (509)
T PRK12452 132 GGGPAADRTTTKLLTNG----------------DQTFSEILQAIEQAKHHIHIQYYIY-------KSDE------IGTKV 182 (509)
T ss_pred cCCcccCCCEEEEeCCH----------------HHHHHHHHHHHHHhCCEEEEEEEEE-------eCCc------HHHHH
Confidence 45889999999999998 7999999999999999999998866 4554 68999
Q ss_pred HHHHHHHHHcCCeEEEEEeCCCCCccccccccccccccHHHHHHHhcCCcEEEEcCCC--CC-CCCccccCccceEEecC
Q 004680 208 GELLKHKAEEGVAVRIMLWDDETSLPIIKNKGVMRTHDEDAFAYFKHTKVICKLCPRL--HH-KFPTLFAHHQKTITVDA 284 (737)
Q Consensus 208 ~~lL~~kA~rGV~VriLvwD~~~s~~~~~~~g~~~~~~~~~~~~l~~~gv~v~~~~r~--~~-~~~~~~~hHqK~vVVD~ 284 (737)
.++|.+||+|||+||||+ |+.||.... ....+.|+++||+|..+.+. +. ....++|||||++|||+
T Consensus 183 ~~aL~~aa~rGV~VRiL~-D~~Gs~~~~----------~~~~~~L~~aGi~v~~f~P~~~~~~~~~~n~RnHRKi~VIDg 251 (509)
T PRK12452 183 RDALIKKAKDGVIVRFLY-DGLGSNTLR----------RRFLQPMKEAGIEIVEFDPIFSAWLLETVNYRNHRKIVIVDG 251 (509)
T ss_pred HHHHHHHHHCCCEEEEEE-ECCCCCCCC----------HHHHHHHHhCCeEEEEecCcccccccccccCCCCCeEEEEcC
Confidence 999999999999999996 999885321 24667899999999865321 11 22468999999999999
Q ss_pred CCcCcccccceEEEEccccCCCCCcCCCCCcccccCCCCcccCccccccccCcccCCCCCCCCceeccceeeCHHHHHHH
Q 004680 285 RAQDSIFDREIMSFVGGLDLCDGRYDTEKHSLFQTLNSESHCFDFYQINIAGASLHKGGPREPWHDVHACITGEAAWDVL 364 (737)
Q Consensus 285 ~~~~~~~~~~~vAfvGG~nL~~~r~Dt~~H~l~~~l~~~~~~~d~~~~~~~g~~~~~~~~~~pWhDv~~~v~Gpav~dl~ 364 (737)
+ +||+||+|+++++.. . ....++|||+|++++||+|.+++
T Consensus 252 ~----------ia~~GG~Ni~d~y~~-~-----------------------------~~~~~~WrD~~~~i~Gp~V~~l~ 291 (509)
T PRK12452 252 E----------IGFTGGLNVGDEYLG-R-----------------------------SKKFPVWRDSHLKVEGKALYKLQ 291 (509)
T ss_pred C----------EEEeCCcccchhhcC-C-----------------------------CCCCCCceEEEEEEECHHHHHHH
Confidence 9 999999999996432 1 11246899999999999999999
Q ss_pred HHHHHHhhhccCCCCCcCCCCC--CCCCCCCCCCCCCCCCCCCCeeeEEEeecCccchhhhccCccchhHHHHHHHHHHH
Q 004680 365 TNFEQRWTKQCDPSLLVPISSI--PNLGHKSNIIPSSNYFNQRNWKVQVFRSIDHVSASQLAKNLTVERSIHEAYVEAIR 442 (737)
Q Consensus 365 ~~F~~rW~~~~~~~~~~~~~~~--~~~~~p~~~~~~~~~~~~~~~~vqv~rs~~~~~~~~~p~~~~~~~sI~~ayl~aI~ 442 (737)
..|.++|+.++++......... ..+. |+. +...+...+|++.| ||.. .+.+++++|+++|+
T Consensus 292 ~~F~~dW~~~~~~~~~~~~~~~~~~~~~-~~~------~~~~~~~~~q~~~s---gp~~-------~~~~i~~~~l~~I~ 354 (509)
T PRK12452 292 AIFLEDWLYASSGLNTYSWDPFMNRQYF-PGK------EISNAEGAVQIVAS---GPSS-------DDKSIRNTLLAVMG 354 (509)
T ss_pred HHHHHHHHHhhCcccccccccccchhcC-CCc------cccCCCeEEEEEeC---CCCc-------hhHHHHHHHHHHHH
Confidence 9999999987653211000000 0001 110 11124457899987 4322 25799999999999
Q ss_pred hccceEEEeeccccCCcccccccccCCCCCccHHHHHHHHHHHHHcCCCcEEEEEecCCCCCCCCCCcchhhhhhHHHhH
Q 004680 443 KAERFIYIENQYFIGGCQLWEKDKHCGCRNLIPIEIALKVVSKIKAKERFAVYILIPMWPEGVPTSDPVQDILHWTRETM 522 (737)
Q Consensus 443 ~A~~~IyIEnqYFi~~~~~w~~~~~~~~~n~i~~~la~~ia~~~~~g~~v~V~IvlP~~p~g~~~~~~~~~i~~~~~~t~ 522 (737)
+||++|||+||||+++. ++..+|..|+++| |+|+|++|..+ ++.+++++.++
T Consensus 355 ~A~~~I~I~tpYf~pd~-----------------~l~~aL~~Aa~rG--V~Vrii~p~~~--------D~~~~~~a~~~- 406 (509)
T PRK12452 355 SAKKSIWIATPYFIPDQ-----------------ETLTLLRLSAISG--IDVRILYPGKS--------DSIISDQASQS- 406 (509)
T ss_pred HhhhEEEEECCccCCCH-----------------HHHHHHHHHHHcC--CEEEEEcCCCC--------ChHHHHHHHHH-
Confidence 99999999999999864 5677888887788 99999999754 34556665444
Q ss_pred HHHHHHHHHHHHhcCCCCCCcCceEEeeccchhhhccCCcccCCCCCCCCchhHHhhhccccceeeeeeEEEEeceEEEE
Q 004680 523 AMMYKLIGEAIQESGQVGHPRDFLNFFCLATREEKKSNGEFVPPYSPHPMTQYWNAQMHRRFMVYVHSKLMIVDDVYLLI 602 (737)
Q Consensus 523 ~~~~~~~~~~L~~~gv~~~p~~yl~~~~l~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~iyvHSK~mIVDD~~~~I 602 (737)
+++.|.++|+++ ++|.+ .++|||++||||++++|
T Consensus 407 ------~~~~L~~aGv~I--------------------~~y~~--------------------~~lHaK~~ivD~~~a~v 440 (509)
T PRK12452 407 ------YFTPLLKAGASI--------------------YSYKD--------------------GFMHAKIVLVDDKIATI 440 (509)
T ss_pred ------HHHHHHHcCCEE--------------------EEecC--------------------CCeeeeEEEECCCEEEE
Confidence 678999999975 24544 58999999999999999
Q ss_pred eccCCCccccCCCCCcceEEEEecCCCCCcchhhHHHHHHHHHHH
Q 004680 603 GSANINQRSMDGQRDTEIAIGCYQLPKNDDQNSEDISAYRLSLWY 647 (737)
Q Consensus 603 GSaNin~RS~~~~~DsEi~v~i~d~~~~~~~~~~~~~~lR~~Lw~ 647 (737)
||+|||.||+..| .|+++.+++++. .+.+.+.-.+.|.
T Consensus 441 GS~Nld~RS~~~n--~E~~~~i~~~~~-----~~~l~~~f~~d~~ 478 (509)
T PRK12452 441 GTANMDVRSFELN--YEIISVLYESET-----VHDIKRDFEDDFK 478 (509)
T ss_pred eCcccCHhHhhhh--hhccEEEECHHH-----HHHHHHHHHHHHH
Confidence 9999999999755 999999998763 2344444455554
|
|
| >PRK01642 cls cardiolipin synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-51 Score=462.43 Aligned_cols=343 Identities=20% Similarity=0.311 Sum_probs=265.9
Q ss_pred CCcccccCceeEEeeccCCCCCCCCCCcCCCCchhHHHHHHHHHHccccEEEEEEeecCCceEEeeCCchhhccchHHHH
Q 004680 128 ASFPQRSNCHVKLYHDAHHSSSFEPPYDLCGSPGKLWEDVYKAIEGAKHLIYIAGWSLNPKMVLVRDSQTEIAHARGVQL 207 (737)
Q Consensus 128 ~~~p~~~gn~v~ly~dg~~~~~f~p~~~~~~~~~~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~L~r~~~~~~~~~~~~~l 207 (737)
+.+|.+.||+|++|.|| +++|++|+++|++||++|+|++|++ ++|. .+.++
T Consensus 108 ~~~~~~~~n~v~ll~~g----------------~~~~~~l~~~I~~Ak~~I~l~~yi~-------~~d~------~g~~i 158 (483)
T PRK01642 108 QGIPGLKGNQLRLLTNG----------------DETFQAIIRDIELARHYILMEFYIW-------RPDG------LGDQV 158 (483)
T ss_pred cCCCccCCCEEEEEcCH----------------HHHHHHHHHHHHHhhcEEEEEEEEE-------ccCC------cHHHH
Confidence 45789999999999998 6999999999999999999998865 4554 58999
Q ss_pred HHHHHHHHHcCCeEEEEEeCCCCCccccccccccccccHHHHHHHhcCCcEEEEc-CCC--C-CCCCccccCccceEEec
Q 004680 208 GELLKHKAEEGVAVRIMLWDDETSLPIIKNKGVMRTHDEDAFAYFKHTKVICKLC-PRL--H-HKFPTLFAHHQKTITVD 283 (737)
Q Consensus 208 ~~lL~~kA~rGV~VriLvwD~~~s~~~~~~~g~~~~~~~~~~~~l~~~gv~v~~~-~r~--~-~~~~~~~~hHqK~vVVD 283 (737)
.++|.+||+|||+||||+ |+.|+....+ ....+.|++.||++..+ |.. + .....++|+|+|++|||
T Consensus 159 ~~aL~~aa~rGV~VriL~-D~~Gs~~~~~---------~~~~~~L~~~Gi~v~~~~p~~~~~~~~~~~n~RnHrKi~VID 228 (483)
T PRK01642 159 AEALIAAAKRGVRVRLLY-DSIGSFAFFR---------SPYPEELRNAGVEVVEFLKVNLGRVFRRRLDLRNHRKIVVID 228 (483)
T ss_pred HHHHHHHHHCCCEEEEEE-ECCCCCCCCc---------HHHHHHHHHCCCEEEEecCCCcccccccccccccCceEEEEc
Confidence 999999999999999996 9998864321 23567789999999875 422 1 12346789999999999
Q ss_pred CCCcCcccccceEEEEccccCCC-CCcCCCCCcccccCCCCcccCccccccccCcccCCCCCCCCceeccceeeCHHHHH
Q 004680 284 ARAQDSIFDREIMSFVGGLDLCD-GRYDTEKHSLFQTLNSESHCFDFYQINIAGASLHKGGPREPWHDVHACITGEAAWD 362 (737)
Q Consensus 284 ~~~~~~~~~~~~vAfvGG~nL~~-~r~Dt~~H~l~~~l~~~~~~~d~~~~~~~g~~~~~~~~~~pWhDv~~~v~Gpav~d 362 (737)
++ +||+||+|+++ ++... ....++|||+|++++||+|.+
T Consensus 229 g~----------ia~~Gg~Ni~d~~y~~~------------------------------~~~~~~w~D~~~~i~Gp~v~~ 268 (483)
T PRK01642 229 GY----------IAYTGSMNVVDPEYFKQ------------------------------DPGVGQWRDTHVRIEGPVVTA 268 (483)
T ss_pred CC----------EEEeCCcccCCHHHhCC------------------------------CCCCCCcEEEEEEEEcHHHHH
Confidence 99 99999999999 64321 112468999999999999999
Q ss_pred HHHHHHHHhhhccCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCeeeEEEeecCccchhhhccCccchhHHHHHHHHHHH
Q 004680 363 VLTNFEQRWTKQCDPSLLVPISSIPNLGHKSNIIPSSNYFNQRNWKVQVFRSIDHVSASQLAKNLTVERSIHEAYVEAIR 442 (737)
Q Consensus 363 l~~~F~~rW~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~vqv~rs~~~~~~~~~p~~~~~~~sI~~ayl~aI~ 442 (737)
++..|.++|+.++++...... +.+..+ |. ...+...+|++.| ||.. .+..++++|+++|.
T Consensus 269 l~~~F~~dW~~~~~~~~~~~~---~~~~~~----~~---~~~~~~~~qi~~s---gP~~-------~~~~~~~~~~~~I~ 328 (483)
T PRK01642 269 LQLIFAEDWEWETGERILPPP---PDVLIM----PF---EEASGHTVQVIAS---GPGD-------PEETIHQFLLTAIY 328 (483)
T ss_pred HHHHHHHHHHHHhCcccCCCC---cccccC----Cc---cCCCCceEEEEeC---CCCC-------hhhHHHHHHHHHHH
Confidence 999999999988765321110 000001 10 1123456899987 4432 25689999999999
Q ss_pred hccceEEEeeccccCCcccccccccCCCCCccHHHHHHHHHHHHHcCCCcEEEEEecCCCCCCCCCCcchhhhhhHHHhH
Q 004680 443 KAERFIYIENQYFIGGCQLWEKDKHCGCRNLIPIEIALKVVSKIKAKERFAVYILIPMWPEGVPTSDPVQDILHWTRETM 522 (737)
Q Consensus 443 ~A~~~IyIEnqYFi~~~~~w~~~~~~~~~n~i~~~la~~ia~~~~~g~~v~V~IvlP~~p~g~~~~~~~~~i~~~~~~t~ 522 (737)
+||++|||++|||+++. .+..+|..|+++| |+|+|++|..++ +.+++|.+++
T Consensus 329 ~A~~~I~I~tpYfip~~-----------------~i~~aL~~Aa~rG--V~Vril~p~~~d--------~~~~~~~~~~- 380 (483)
T PRK01642 329 SARERLWITTPYFVPDE-----------------DLLAALKTAALRG--VDVRIIIPSKND--------SLLVFWASRA- 380 (483)
T ss_pred HhccEEEEEcCCcCCCH-----------------HHHHHHHHHHHcC--CEEEEEeCCCCC--------cHHHHHHHHH-
Confidence 99999999999999863 6778888888888 999999998643 4456665544
Q ss_pred HHHHHHHHHHHHhcCCCCCCcCceEEeeccchhhhccCCcccCCCCCCCCchhHHhhhccccceeeeeeEEEEeceEEEE
Q 004680 523 AMMYKLIGEAIQESGQVGHPRDFLNFFCLATREEKKSNGEFVPPYSPHPMTQYWNAQMHRRFMVYVHSKLMIVDDVYLLI 602 (737)
Q Consensus 523 ~~~~~~~~~~L~~~gv~~~p~~yl~~~~l~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~iyvHSK~mIVDD~~~~I 602 (737)
+++.|.++|+++ ++|.+ .++|||+|||||++++|
T Consensus 381 ------~~~~L~~~Gv~I--------------------~~y~~--------------------~~~HaK~~ivD~~~~~v 414 (483)
T PRK01642 381 ------FFTELLEAGVKI--------------------YRYEG--------------------GLLHTKSVLVDDELALV 414 (483)
T ss_pred ------HHHHHHHcCCEE--------------------EEeCC--------------------CceEeEEEEECCCEEEe
Confidence 578899999865 23543 58999999999999999
Q ss_pred eccCCCccccCCCCCcceEEEEecCCCCCcchhhHHHHHHHHHHHHhc
Q 004680 603 GSANINQRSMDGQRDTEIAIGCYQLPKNDDQNSEDISAYRLSLWYEHT 650 (737)
Q Consensus 603 GSaNin~RS~~~~~DsEi~v~i~d~~~~~~~~~~~~~~lR~~Lw~ehl 650 (737)
||+|+|.||+..| .|+++.+++++. .+.+.+...+.|+...
T Consensus 415 GS~N~d~rS~~~N--~E~~~~i~d~~~-----~~~l~~~f~~d~~~s~ 455 (483)
T PRK01642 415 GTVNLDMRSFWLN--FEITLVIDDTGF-----AADLAAMQEDYFARSR 455 (483)
T ss_pred eCCcCCHhHHhhh--hcceEEEECHHH-----HHHHHHHHHHHHHhCe
Confidence 9999999999755 999999998774 2445555566665443
|
|
| >PRK11263 cardiolipin synthase 2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-49 Score=439.39 Aligned_cols=338 Identities=17% Similarity=0.220 Sum_probs=258.8
Q ss_pred ccccCceeEEeeccCCCCCCCCCCcCCCCchhHHHHHHHHHHccccEEEEEEeecCCceEEeeCCchhhccchHHHHHHH
Q 004680 131 PQRSNCHVKLYHDAHHSSSFEPPYDLCGSPGKLWEDVYKAIEGAKHLIYIAGWSLNPKMVLVRDSQTEIAHARGVQLGEL 210 (737)
Q Consensus 131 p~~~gn~v~ly~dg~~~~~f~p~~~~~~~~~~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~L~r~~~~~~~~~~~~~l~~l 210 (737)
+.+.||+|+||.|| +++|.+++++|++||++|+|++|+|. +|. .+..|.++
T Consensus 3 ~~~~gN~v~ll~~G----------------~e~~~~l~~~I~~Ak~~I~i~~yi~~-------~d~------~g~~l~~a 53 (411)
T PRK11263 3 SWREGNRIQLLENG----------------EQYYPRVFEAIAAAQEEILLETFILF-------EDK------VGKQLHAA 53 (411)
T ss_pred cccCCCeEEEEeCH----------------HHHHHHHHHHHHHhCCEEEEEEEEEe-------cCc------hHHHHHHH
Confidence 67899999999998 69999999999999999999998763 443 58899999
Q ss_pred HHHHHHcCCeEEEEEeCCCCCccccccccccccccHHHHHHHhcCCcEEEEcCCCCC----CCCccccCccceEEecCCC
Q 004680 211 LKHKAEEGVAVRIMLWDDETSLPIIKNKGVMRTHDEDAFAYFKHTKVICKLCPRLHH----KFPTLFAHHQKTITVDARA 286 (737)
Q Consensus 211 L~~kA~rGV~VriLvwD~~~s~~~~~~~g~~~~~~~~~~~~l~~~gv~v~~~~r~~~----~~~~~~~hHqK~vVVD~~~ 286 (737)
|++||+|||+||||+ |..|+..+ .....+.|.++||++..+.+.+. ....+.++|+|++|||++
T Consensus 54 L~~aa~rGV~Vril~-D~~gs~~~----------~~~~~~~L~~aGv~v~~~~p~~~~~~~~~~~~~R~HrKiiVIDg~- 121 (411)
T PRK11263 54 LLAAAQRGVKVEVLV-DGYGSPDL----------SDEFVNELTAAGVRFRYFDPRPRLLGMRTNLFRRMHRKIVVIDGR- 121 (411)
T ss_pred HHHHHHCCCEEEEEE-ECCCCCCC----------CHHHHHHHHHCCeEEEEeCCcccccccccccccCCcceEEEEcCC-
Confidence 999999999999997 99887532 12456778999999986532221 112345999999999999
Q ss_pred cCcccccceEEEEccccCCCCCcCCCCCcccccCCCCcccCccccccccCcccCCCCCCCCceeccceeeCHHHHHHHHH
Q 004680 287 QDSIFDREIMSFVGGLDLCDGRYDTEKHSLFQTLNSESHCFDFYQINIAGASLHKGGPREPWHDVHACITGEAAWDVLTN 366 (737)
Q Consensus 287 ~~~~~~~~~vAfvGG~nL~~~r~Dt~~H~l~~~l~~~~~~~d~~~~~~~g~~~~~~~~~~pWhDv~~~v~Gpav~dl~~~ 366 (737)
+|||||+|++++++.. ....+|+|+|++|+||+|.+++..
T Consensus 122 ---------~a~vGg~N~~~~~~~~-------------------------------~g~~~w~D~~v~i~Gp~V~~l~~~ 161 (411)
T PRK11263 122 ---------IAFVGGINYSADHLSD-------------------------------YGPEAKQDYAVEVEGPVVADIHQF 161 (411)
T ss_pred ---------EEEEcCeEchHhhccc-------------------------------cCCCCceEEEEEEECHHHHHHHHH
Confidence 9999999999864321 012479999999999999999999
Q ss_pred HHHHhhhccCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCeeeEEEeecCccchhhhccCccchhHHHHHHHHHHHhccc
Q 004680 367 FEQRWTKQCDPSLLVPISSIPNLGHKSNIIPSSNYFNQRNWKVQVFRSIDHVSASQLAKNLTVERSIHEAYVEAIRKAER 446 (737)
Q Consensus 367 F~~rW~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~vqv~rs~~~~~~~~~p~~~~~~~sI~~ayl~aI~~A~~ 446 (737)
|.+.|..........+.. . .++. ....+...+|++.+ ++. .....|+.+|+.+|.+||+
T Consensus 162 f~~~w~~~~~~~~~~~~~---~--~~~~------~~~~g~~~~~~v~~---~p~-------~~~~~i~~~~~~~i~~A~~ 220 (411)
T PRK11263 162 ELEALPGQSAARRWWRRH---H--RAEE------NRQPGEAQALLVWR---DNE-------EHRDDIERHYLKALRQARR 220 (411)
T ss_pred HHHHHhhcccchhhhccc---c--cCcc------cCCCCCeEEEEEEC---CCc-------chHHHHHHHHHHHHHHhce
Confidence 999997542110000000 0 0100 11234446777765 221 1246899999999999999
Q ss_pred eEEEeeccccCCcccccccccCCCCCccHHHHHHHHHHHHHcCCCcEEEEEecCCCCCCCCCCcchhhhhhHHHhHHHHH
Q 004680 447 FIYIENQYFIGGCQLWEKDKHCGCRNLIPIEIALKVVSKIKAKERFAVYILIPMWPEGVPTSDPVQDILHWTRETMAMMY 526 (737)
Q Consensus 447 ~IyIEnqYFi~~~~~w~~~~~~~~~n~i~~~la~~ia~~~~~g~~v~V~IvlP~~p~g~~~~~~~~~i~~~~~~t~~~~~ 526 (737)
+|||+||||+|+. .+..+|..|+++| |+|+||+|..| +++++++.++.
T Consensus 221 ~I~I~tpYf~p~~-----------------~l~~aL~~Aa~RG--V~V~ii~~~~~--------d~~~~~~a~~~----- 268 (411)
T PRK11263 221 EVIIANAYFFPGY-----------------RLLRALRNAARRG--VRVRLILQGEP--------DMPIVRVGARL----- 268 (411)
T ss_pred EEEEEecCcCCCH-----------------HHHHHHHHHHHCC--CEEEEEeCCCC--------CcHHHHHHHHH-----
Confidence 9999999999863 5778888888888 99999999754 34566665443
Q ss_pred HHHHHHHHhcCCCCCCcCceEEeeccchhhhccCCcccCCCCCCCCchhHHhhhccccceeeeeeEEEEeceEEEEeccC
Q 004680 527 KLIGEAIQESGQVGHPRDFLNFFCLATREEKKSNGEFVPPYSPHPMTQYWNAQMHRRFMVYVHSKLMIVDDVYLLIGSAN 606 (737)
Q Consensus 527 ~~~~~~L~~~gv~~~p~~yl~~~~l~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~iyvHSK~mIVDD~~~~IGSaN 606 (737)
+++.|.++|+++ ++|.+ .++|||+|||||++++|||+|
T Consensus 269 --~~~~Ll~~Gv~I--------------------~~y~~--------------------~~lHaK~~viD~~~~~vGS~N 306 (411)
T PRK11263 269 --LYNYLLKGGVQI--------------------YEYCR--------------------RPLHGKVALMDDHWATVGSSN 306 (411)
T ss_pred --HHHHHHHCCCEE--------------------EEecC--------------------CCceeEEEEECCCEEEEeCCc
Confidence 678999999975 24543 479999999999999999999
Q ss_pred CCccccCCCCCcceEEEEecCCCCCcchhhHHHHHHHHHHHHhcC
Q 004680 607 INQRSMDGQRDTEIAIGCYQLPKNDDQNSEDISAYRLSLWYEHTG 651 (737)
Q Consensus 607 in~RS~~~~~DsEi~v~i~d~~~~~~~~~~~~~~lR~~Lw~ehlG 651 (737)
||.|||..| .|+++.++|++. .+++.+...+++++|+-
T Consensus 307 ld~rS~~lN--~E~~~~i~d~~~-----a~~l~~~~~~~~~~~s~ 344 (411)
T PRK11263 307 LDPLSLSLN--LEANLIIRDRAF-----NQTLRDNLNGLIAADCQ 344 (411)
T ss_pred CCHHHhhhh--hhcCEEEeCHHH-----HHHHHHHHHHHHHhhCE
Confidence 999999655 999999999874 35666777777777764
|
|
| >COG1502 Cls Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-38 Score=354.45 Aligned_cols=333 Identities=26% Similarity=0.331 Sum_probs=244.9
Q ss_pred ccCceeEEeeccCCCCCCCCCCcCCCCchhHHHHHHHHHHccccEEEEEEeecCCceEEeeCCchhhccchHHHHHHHHH
Q 004680 133 RSNCHVKLYHDAHHSSSFEPPYDLCGSPGKLWEDVYKAIEGAKHLIYIAGWSLNPKMVLVRDSQTEIAHARGVQLGELLK 212 (737)
Q Consensus 133 ~~gn~v~ly~dg~~~~~f~p~~~~~~~~~~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~L~r~~~~~~~~~~~~~l~~lL~ 212 (737)
..+|.++++.++ .+.|.++.++|++|+++|+++.|.+ .++. .+..+.++|.
T Consensus 57 ~~~~~~~~l~~~----------------~~~~~~~~~~i~~a~~~I~~~~~i~-------~~d~------~~~~i~~~l~ 107 (438)
T COG1502 57 ISGNGVDLLKDG----------------ADAFAALIELIEAAKKSIYLQYYIW-------QDDE------LGREILDALI 107 (438)
T ss_pred CCCCceEEecCH----------------HHHHHHHHHHHHHHhhEEEEEEEEE-------eCCh------hHHHHHHHHH
Confidence 689999999998 6999999999999999999987654 4544 5899999999
Q ss_pred HHHHcCCeEEEEEeCCCCCccccccccccccccHHHHHHHhcCCc-EEEEc-CCCC---CCCCccccCccceEEecCCCc
Q 004680 213 HKAEEGVAVRIMLWDDETSLPIIKNKGVMRTHDEDAFAYFKHTKV-ICKLC-PRLH---HKFPTLFAHHQKTITVDARAQ 287 (737)
Q Consensus 213 ~kA~rGV~VriLvwD~~~s~~~~~~~g~~~~~~~~~~~~l~~~gv-~v~~~-~r~~---~~~~~~~~hHqK~vVVD~~~~ 287 (737)
++|++||+||+|+ |+.++.... .......+++.++ ++... |..+ .....+.++|+|++|||++
T Consensus 108 ~~a~~gv~vr~l~-D~~~~~~~~---------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~r~H~K~~viD~~-- 175 (438)
T COG1502 108 EAAKRGVEVRLLL-DDIGSTRGL---------LKSLLALLKRAGIEEVRLFNPASPRPLRFRRLNRRLHRKIVVIDGK-- 175 (438)
T ss_pred HHHHcCCEEEEEE-ecCCCcccc---------cHHHHHHHhcCCceEEEecCCcccccchhhhhhccccceEEEEcCC--
Confidence 9999999999998 988873221 1245677888998 65543 3222 1234678999999999999
Q ss_pred CcccccceEEEEccccCCCCCcCCCCCcccccCCCCcccCccccccccCcccCCCCCCCCceeccceeeCHHHHHHHHHH
Q 004680 288 DSIFDREIMSFVGGLDLCDGRYDTEKHSLFQTLNSESHCFDFYQINIAGASLHKGGPREPWHDVHACITGEAAWDVLTNF 367 (737)
Q Consensus 288 ~~~~~~~~vAfvGG~nL~~~r~Dt~~H~l~~~l~~~~~~~d~~~~~~~g~~~~~~~~~~pWhDv~~~v~Gpav~dl~~~F 367 (737)
++|+||.|+.+.++... ...++|+|++++++||+|.++..+|
T Consensus 176 --------i~~vGg~N~~d~y~~~~------------------------------~~~~~~~D~~~~~~g~~v~~l~~~f 217 (438)
T COG1502 176 --------VAFVGGANIGDEYFHKD------------------------------KGLGYWRDLHVRITGPAVADLARLF 217 (438)
T ss_pred --------EEEecCcccchhhhccC------------------------------cCcccceeeeEEEECHHHHHHHHHH
Confidence 99999999999865321 0135899999999999999999999
Q ss_pred HHHhhhccCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCeeeEEEeecCccchhhhccCccchhHHHHHHHHHHHhccce
Q 004680 368 EQRWTKQCDPSLLVPISSIPNLGHKSNIIPSSNYFNQRNWKVQVFRSIDHVSASQLAKNLTVERSIHEAYVEAIRKAERF 447 (737)
Q Consensus 368 ~~rW~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~vqv~rs~~~~~~~~~p~~~~~~~sI~~ayl~aI~~A~~~ 447 (737)
.++|+...+............ .++ ...........+|++.+. |....+. ....+...|+.+|.+|+++
T Consensus 218 ~~~w~~~~~~~~~~~~~~~~~--~~~----~~~~~~~~~~~~~~~~~~---P~~~~~~---~~~~~~~~~~~~i~~A~~~ 285 (438)
T COG1502 218 IQDWNLESGSSKPLLALVRPP--LQS----LSLLPVGRGSTVQVLSSG---PDKGLGS---ELIELNRLLLKAINSARES 285 (438)
T ss_pred HHHhhhccCcCcccccccccc--ccc----ccccccccCcceEEEecC---Cccccch---hhhhHHHHHHHHHHhhceE
Confidence 999998743221100000000 000 000011222336888873 3332211 1112559999999999999
Q ss_pred EEEeeccccCCcccccccccCCCCCccHHHHHHHHHHHHHcCCCcEEEEEecCCCCCCCCCCcchhhhhhHHHhHHHHHH
Q 004680 448 IYIENQYFIGGCQLWEKDKHCGCRNLIPIEIALKVVSKIKAKERFAVYILIPMWPEGVPTSDPVQDILHWTRETMAMMYK 527 (737)
Q Consensus 448 IyIEnqYFi~~~~~w~~~~~~~~~n~i~~~la~~ia~~~~~g~~v~V~IvlP~~p~g~~~~~~~~~i~~~~~~t~~~~~~ 527 (737)
|+|++|||+++. ++..+|..+.++| |+|+|++|.. ...+..+++|..+
T Consensus 286 i~i~~pYf~~~~-----------------~~~~al~~a~~~G--v~V~ii~~~~------~~~d~~~~~~~~~------- 333 (438)
T COG1502 286 ILIATPYFVPDR-----------------ELLAALKAAARRG--VDVRIIIPSL------GANDSAIVHAAYR------- 333 (438)
T ss_pred EEEEcCCcCCCH-----------------HHHHHHHHHHhcC--CEEEEEeCCC------CCCChHHHHHHHH-------
Confidence 999999999874 6778888887888 9999999953 1234455554433
Q ss_pred HHHHHHHhcCCCCCCcCceEEeeccchhhhccCCcccCCCCCCCCchhHHhhhccccceeeeeeEEEEeceEEEEeccCC
Q 004680 528 LIGEAIQESGQVGHPRDFLNFFCLATREEKKSNGEFVPPYSPHPMTQYWNAQMHRRFMVYVHSKLMIVDDVYLLIGSANI 607 (737)
Q Consensus 528 ~~~~~L~~~gv~~~p~~yl~~~~l~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~iyvHSK~mIVDD~~~~IGSaNi 607 (737)
.++..|.+.|+++ ++|.+ ..++|+|+|||||++++|||+||
T Consensus 334 ~~~~~l~~~gv~i--------------------~~~~~-------------------g~~lH~K~~iiD~~~~~vGS~N~ 374 (438)
T COG1502 334 AYLKELLEAGVKV--------------------YEYPG-------------------GAFLHSKVMIIDDRTVLVGSANL 374 (438)
T ss_pred HHHHHHHHhCCEE--------------------EEecC-------------------CCcceeeEEEEcCCEEEEeCCcC
Confidence 4678999999864 23332 03899999999999999999999
Q ss_pred CccccCCCCCcceEEEEecCCC
Q 004680 608 NQRSMDGQRDTEIAIGCYQLPK 629 (737)
Q Consensus 608 n~RS~~~~~DsEi~v~i~d~~~ 629 (737)
|.||+.+| +|++++++++..
T Consensus 375 ~~rS~~lN--~E~~~~i~d~~~ 394 (438)
T COG1502 375 DPRSLRLN--FEVGLVIEDPEL 394 (438)
T ss_pred CHhHHHHh--hhheeEEeCHHH
Confidence 99999765 999999998754
|
|
| >PRK09428 pssA phosphatidylserine synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-36 Score=336.45 Aligned_cols=346 Identities=16% Similarity=0.121 Sum_probs=229.5
Q ss_pred cccccCceeEEeeccCCCCCCCCCCcCCCCchhHHHHHHHHHHccccEEEEEEeecCCceEEeeCCchhhccchHHHHHH
Q 004680 130 FPQRSNCHVKLYHDAHHSSSFEPPYDLCGSPGKLWEDVYKAIEGAKHLIYIAGWSLNPKMVLVRDSQTEIAHARGVQLGE 209 (737)
Q Consensus 130 ~p~~~gn~v~ly~dg~~~~~f~p~~~~~~~~~~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~L~r~~~~~~~~~~~~~l~~ 209 (737)
+|+ .+|+|+++.+| +++|++|+++|++|+++|+|++|.| .+|+ .|..|.+
T Consensus 20 ~~~-~~~~v~~l~~~----------------~~f~~~Ll~~I~~Ak~~I~l~~y~~-------~~D~------~g~~il~ 69 (451)
T PRK09428 20 IPQ-SPDDVETLYSP----------------ADFRETLLEKIASAKKRIYIVALYL-------EDDE------AGREILD 69 (451)
T ss_pred ccc-CcccEEEEcCH----------------HHHHHHHHHHHHhcCCeEEEEEEEe-------cCCc------hHHHHHH
Confidence 444 67899999998 6999999999999999999999876 3444 6899999
Q ss_pred HHHHHHH--cCCeEEEEEeCCCCCc-cccccccccc-cccHHHHHHHhcC--CcEEEEcCCCCCCCCccccCccceEEec
Q 004680 210 LLKHKAE--EGVAVRIMLWDDETSL-PIIKNKGVMR-THDEDAFAYFKHT--KVICKLCPRLHHKFPTLFAHHQKTITVD 283 (737)
Q Consensus 210 lL~~kA~--rGV~VriLvwD~~~s~-~~~~~~g~~~-~~~~~~~~~l~~~--gv~v~~~~r~~~~~~~~~~hHqK~vVVD 283 (737)
+|.+|++ +||+|+||+ |..... +.. |... ..+..+.+.|+++ ||++.++.........++++|+|++|||
T Consensus 70 AL~~a~~~~~gv~VrvLv-D~~Ra~Rg~i---G~~~~~~~~~~~~~l~~~~~gv~v~~f~~p~~~~e~~gr~HrKi~IiD 145 (451)
T PRK09428 70 ALYQAKQQNPELDIKVLV-DWHRAQRGLI---GAAASNTNADWYCEMAQEYPGVDIPVYGVPVNTREALGVLHLKGFIID 145 (451)
T ss_pred HHHHHHhcCCCcEEEEEE-Eccccccccc---ccCCCCcCHHHHHHHHHhCCCceEEEcCCccccchhhhhceeeEEEEC
Confidence 9998865 799999998 984221 100 1000 1123456667654 6888776211111235678999999999
Q ss_pred CCCcCcccccceEEEEccccCCCCCcCCCCCcccccCCCCcccCccccccccCcccCCCCCCCCceeccceeeCHHHHHH
Q 004680 284 ARAQDSIFDREIMSFVGGLDLCDGRYDTEKHSLFQTLNSESHCFDFYQINIAGASLHKGGPREPWHDVHACITGEAAWDV 363 (737)
Q Consensus 284 ~~~~~~~~~~~~vAfvGG~nL~~~r~Dt~~H~l~~~l~~~~~~~d~~~~~~~g~~~~~~~~~~pWhDv~~~v~Gpav~dl 363 (737)
++ |+|+| .||++.|+.. ... ...|..++|+||++.++
T Consensus 146 ~~----------v~ysG-aNi~d~Yl~~------------------------------~~~--~r~Dry~~i~g~~la~~ 182 (451)
T PRK09428 146 DT----------VLYSG-ASLNNVYLHQ------------------------------HDK--YRYDRYHLIRNAELADS 182 (451)
T ss_pred CC----------EEEec-ccccHHHhcC------------------------------Ccc--cCcceEEEEeCchHHHH
Confidence 99 99997 7999975421 001 12366888999999999
Q ss_pred HHHHHHHhhhccCCCCCcCCCCC---CCC----------CCCCCCCCCCCCCCCCCeeeEEEeecCccchhhhccCccch
Q 004680 364 LTNFEQRWTKQCDPSLLVPISSI---PNL----------GHKSNIIPSSNYFNQRNWKVQVFRSIDHVSASQLAKNLTVE 430 (737)
Q Consensus 364 ~~~F~~rW~~~~~~~~~~~~~~~---~~~----------~~p~~~~~~~~~~~~~~~~vqv~rs~~~~~~~~~p~~~~~~ 430 (737)
...|.+.|..+++.......... ..+ +... ....+...+.-.+++...+..|+ .
T Consensus 183 ~~~fi~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~v~p~~g~g~----------~ 249 (451)
T PRK09428 183 MVNFIQQNLLNSPAVNRLDQPNRPKTKEIKNDIRQFRQRLRDA---AYQFQGQANNDELSVTPLVGLGK----------K 249 (451)
T ss_pred HHHHHHHHhhccCccccccccccccchhhHHHHHHHHHHHhhh---ccCcccccCCCCeEEeeeeccCC----------c
Confidence 99999999876542100000000 000 0000 00000011111234443322121 2
Q ss_pred hHHHHHHHHHHHhccceEEEeeccccCCcccccccccCCCCCccHHHHHHHHHHHHHcCCCcEEEEEecCCCCCCCCCCc
Q 004680 431 RSIHEAYVEAIRKAERFIYIENQYFIGGCQLWEKDKHCGCRNLIPIEIALKVVSKIKAKERFAVYILIPMWPEGVPTSDP 510 (737)
Q Consensus 431 ~sI~~ayl~aI~~A~~~IyIEnqYFi~~~~~w~~~~~~~~~n~i~~~la~~ia~~~~~g~~v~V~IvlP~~p~g~~~~~~ 510 (737)
..+...+..+|.+|++.|+|.||||+++. .+..+|..++++| ++|.||+|.....+.-.++
T Consensus 250 ~~l~~~~~~li~~A~~~i~I~TPYF~p~~-----------------~l~~~L~~a~~rG--v~V~Ii~~~~~andfy~~~ 310 (451)
T PRK09428 250 NLLNKTIFHLMASAEQKLTICTPYFNLPA-----------------ILVRNIIRLLRRG--KKVEIIVGDKTANDFYIPP 310 (451)
T ss_pred hHHHHHHHHHHhccCcEEEEEeCCcCCCH-----------------HHHHHHHHHHhcC--CcEEEEcCCcccccCcCCC
Confidence 57889999999999999999999999864 5678888888888 9999999975322222234
Q ss_pred chhhhhhHHHhHHHHHH----HH---HHHHHhcC---CCCCCcCceEEeeccchhhhccCCcccCCCCCCCCchhHHhhh
Q 004680 511 VQDILHWTRETMAMMYK----LI---GEAIQESG---QVGHPRDFLNFFCLATREEKKSNGEFVPPYSPHPMTQYWNAQM 580 (737)
Q Consensus 511 ~~~i~~~~~~t~~~~~~----~~---~~~L~~~g---v~~~p~~yl~~~~l~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 580 (737)
+++++.+..+.+ +|. .+ .+.|.++| ++ .++|.+
T Consensus 311 d~~~~~~~~~py--~ye~~lr~f~~~~~~li~~G~l~v~--------------------i~~~~~--------------- 353 (451)
T PRK09428 311 DEPFKIIGALPY--LYEINLRRFAKRLQYYIDNGQLNVR--------------------LWKDGD--------------- 353 (451)
T ss_pred ccHHHHhhhhHH--HHHHhhhhhHHHhhhhhhcCcceEE--------------------EEecCC---------------
Confidence 556665554332 111 11 12344555 32 123332
Q ss_pred ccccceeeeeeEEEEeceEEEEeccCCCccccCCCCCcceEEEEecCC
Q 004680 581 HRRFMVYVHSKLMIVDDVYLLIGSANINQRSMDGQRDTEIAIGCYQLP 628 (737)
Q Consensus 581 ~r~~~iyvHSK~mIVDD~~~~IGSaNin~RS~~~~~DsEi~v~i~d~~ 628 (737)
..+|+|.|+|||+|++|||+|+|.||+. .|+|+++.++++.
T Consensus 354 -----~~~HaK~i~vD~~~~~iGS~Nld~RS~~--ln~E~~l~i~d~~ 394 (451)
T PRK09428 354 -----NSYHLKGIWVDDRWMLLTGNNLNPRAWR--LDLENALLIHDPK 394 (451)
T ss_pred -----CcceEEEEEEeCCEEEEcCCCCChhHhh--hcccceEEEECCh
Confidence 5799999999999999999999999995 6699999999986
|
|
| >PHA02820 phospholipase-D-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-36 Score=332.62 Aligned_cols=344 Identities=15% Similarity=0.134 Sum_probs=226.0
Q ss_pred hhHHHHHHHHHHccccEEEEEEeecCCceEEeeCCchhhccchHHHHHHHHHHHHHcCCeEEEEEeCCCCCccccccccc
Q 004680 161 GKLWEDVYKAIEGAKHLIYIAGWSLNPKMVLVRDSQTEIAHARGVQLGELLKHKAEEGVAVRIMLWDDETSLPIIKNKGV 240 (737)
Q Consensus 161 ~~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~L~r~~~~~~~~~~~~~l~~lL~~kA~rGV~VriLvwD~~~s~~~~~~~g~ 240 (737)
...++.+.+.|.+||++|+|+++.|.| ++... +..|.+|.++|++||+|||+||||+ |..+..
T Consensus 25 ~~t~~~~~~lI~~Ak~~I~I~s~yf~~------~d~~~--~~~G~~i~~aL~~aA~rGV~VRIL~-d~~~~~-------- 87 (424)
T PHA02820 25 LSTFNFWREILSNTTKTLDISSFYWSL------SDEVG--TNFGTMILNEIIQLPKRGVRVRIAV-NKSNKP-------- 87 (424)
T ss_pred CCHHHHHHHHHHhhCcEEEEEeEEEec------Ccccc--chhHHHHHHHHHHHHHCCCEEEEEE-CCCCCc--------
Confidence 367899999999999999999886642 22100 1148899999999999999999997 864211
Q ss_pred cccccHHHHHHHhcCCcEEEEcCCCCCCCCccccCccceEEecCCCcCcccccceEEEEccccCCCCCcCCCCCcccccC
Q 004680 241 MRTHDEDAFAYFKHTKVICKLCPRLHHKFPTLFAHHQKTITVDARAQDSIFDREIMSFVGGLDLCDGRYDTEKHSLFQTL 320 (737)
Q Consensus 241 ~~~~~~~~~~~l~~~gv~v~~~~r~~~~~~~~~~hHqK~vVVD~~~~~~~~~~~~vAfvGG~nL~~~r~Dt~~H~l~~~l 320 (737)
....+.|+++||++..+.... ...+++|+|++|||++ ++|+||+|+.++ +.+
T Consensus 88 -----~~~~~~L~~aGv~v~~~~~~~---~~~~~~HrK~~VIDg~----------~~~iGS~Nid~r-sl~--------- 139 (424)
T PHA02820 88 -----LKDVELLQMAGVEVRYIDITN---ILGGVLHTKFWISDNT----------HIYLGSANMDWR-SLT--------- 139 (424)
T ss_pred -----hhhHHHHHhCCCEEEEEecCC---CCcccceeeEEEECCC----------EEEEeCCcCChh-hhh---------
Confidence 123456888999998654211 2357899999999999 999999999763 321
Q ss_pred CCCcccCccccccccCcccCCCCCCCCceecccee--eCHHHHHHHHHHHHHhhhccCCCCCcCCCCCCCCCCCCCCCCC
Q 004680 321 NSESHCFDFYQINIAGASLHKGGPREPWHDVHACI--TGEAAWDVLTNFEQRWTKQCDPSLLVPISSIPNLGHKSNIIPS 398 (737)
Q Consensus 321 ~~~~~~~d~~~~~~~g~~~~~~~~~~pWhDv~~~v--~Gpav~dl~~~F~~rW~~~~~~~~~~~~~~~~~~~~p~~~~~~ 398 (737)
..+|+++.+ +||+|.++++.|.+.|+..++.........++..+.+.. |.
T Consensus 140 --------------------------~n~E~gv~i~~~g~~v~~L~~~F~~dW~~~~~~~~~~~~~~~~~~~~~~~--p~ 191 (424)
T PHA02820 140 --------------------------QVKELGIAIFNNSNLAADLTQIFEVYWYLGVNNLPYNWKNFYPLYYNTDH--PL 191 (424)
T ss_pred --------------------------hCCceEEEEecchHHHHHHHHHHHHHHHhhccCCCCccccccccccccCC--Cc
Confidence 124677777 799999999999999997653211100000000010000 10
Q ss_pred CCCCCCCCeeeEEEeecCccchhhhccCccchhHHHHHHHHHHHhccceEEEeeccccCCcc-------cccccccCCCC
Q 004680 399 SNYFNQRNWKVQVFRSIDHVSASQLAKNLTVERSIHEAYVEAIRKAERFIYIENQYFIGGCQ-------LWEKDKHCGCR 471 (737)
Q Consensus 399 ~~~~~~~~~~vqv~rs~~~~~~~~~p~~~~~~~sI~~ayl~aI~~A~~~IyIEnqYFi~~~~-------~w~~~~~~~~~ 471 (737)
... ..+....+++.+ +|....+ .......++|+++|.+||++|||+++||+|+.. .|+
T Consensus 192 ~~~-~~~~~~~~~~ss---sP~~~~~---~~r~~~~~~~l~~I~~Ak~~I~I~tpyfvP~~~~~~~~~~yw~-------- 256 (424)
T PHA02820 192 SLN-VSGVPHSVFIAS---APQQLCT---MERTNDLTALLSCIRNASKFVYVSVMNFIPIIYSKAGKILFWP-------- 256 (424)
T ss_pred ccc-cCCccceEEEeC---CChhhcC---CCCCchHHHHHHHHHHHhhEEEEEEccccceeeccCCcccchH--------
Confidence 000 111112344444 2222111 112446899999999999999999999999832 232
Q ss_pred CccHHHHHHHHHH-HHHcCCCcEEEEEecCCCCCCCCCCcchhhhhhHHHhHHHHHHHHHHHHHhcCCCCCCcCceEEee
Q 004680 472 NLIPIEIALKVVS-KIKAKERFAVYILIPMWPEGVPTSDPVQDILHWTRETMAMMYKLIGEAIQESGQVGHPRDFLNFFC 550 (737)
Q Consensus 472 n~i~~~la~~ia~-~~~~g~~v~V~IvlP~~p~g~~~~~~~~~i~~~~~~t~~~~~~~~~~~L~~~gv~~~p~~yl~~~~ 550 (737)
.+..+|.+ |++|| |+|+|++|.|++. ..+.++. ...++.|.++|+++ ++++|.
T Consensus 257 -----~i~~AL~~AA~~RG--V~VriLvp~~~d~--------~~~~~a~-------~~~l~~L~~~gv~I----~Vk~y~ 310 (424)
T PHA02820 257 -----YIEDELRRAAIDRK--VSVKLLISCWQRS--------SFIMRNF-------LRSIAMLKSKNINI----EVKLFI 310 (424)
T ss_pred -----HHHHHHHHHHHhCC--CEEEEEEeccCCC--------CccHHHH-------HHHHHHHhccCceE----EEEEEE
Confidence 56677764 55677 9999999988653 2222322 22567888899876 455542
Q ss_pred ccchhhhccCCcccCCCCCCCCchhHHhhhccccceeeeeeEEEEeceEEEEeccCCCccccCCCCCcceEEEEecCCCC
Q 004680 551 LATREEKKSNGEFVPPYSPHPMTQYWNAQMHRRFMVYVHSKLMIVDDVYLLIGSANINQRSMDGQRDTEIAIGCYQLPKN 630 (737)
Q Consensus 551 l~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~iyvHSK~mIVDD~~~~IGSaNin~RS~~~~~DsEi~v~i~d~~~~ 630 (737)
... +.+. . .+..++|||+||||+ ++.|||||||.||+..| .|+++.+++++..
T Consensus 311 ~p~---------~~~~-~--------------~~~~f~HaK~~vvD~-~a~IGTsN~D~rsf~~n--~ev~~~i~~~~~~ 363 (424)
T PHA02820 311 VPD---------ADPP-I--------------PYSRVNHAKYMVTDK-TAYIGTSNWTGNYFTDT--CGVSINITPDDGL 363 (424)
T ss_pred cCc---------cccc-C--------------CcceeeeeeEEEEcc-cEEEECCcCCHHHHhcc--CcEEEEEecCCcH
Confidence 110 1110 0 013699999999997 69999999999999877 9999999886410
Q ss_pred CcchhhHHHHHHHHHHH
Q 004680 631 DDQNSEDISAYRLSLWY 647 (737)
Q Consensus 631 ~~~~~~~~~~lR~~Lw~ 647 (737)
+.+.++.+...+-|.
T Consensus 364 --~~~~~l~~~F~~D~~ 378 (424)
T PHA02820 364 --GLRQQLEDIFIRDWN 378 (424)
T ss_pred --HHHHHHHHHHHHhcC
Confidence 023455555566665
|
|
| >PHA03003 palmytilated EEV membrane glycoprotein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-35 Score=321.40 Aligned_cols=330 Identities=17% Similarity=0.148 Sum_probs=219.1
Q ss_pred hHHHHHHHHHHccccEEEEEEeecCCceEEeeCCchhhccchHHHHHHHHHHHHHcCCeEEEEEeCCCCCcccccccccc
Q 004680 162 KLWEDVYKAIEGAKHLIYIAGWSLNPKMVLVRDSQTEIAHARGVQLGELLKHKAEEGVAVRIMLWDDETSLPIIKNKGVM 241 (737)
Q Consensus 162 ~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~L~r~~~~~~~~~~~~~l~~lL~~kA~rGV~VriLvwD~~~s~~~~~~~g~~ 241 (737)
..|++++++|++||++|+|+.|+|. ++++. .|.+|.++|++||+|||+||||+ |+.++.
T Consensus 31 ~~~~~l~~~I~~Ak~~I~i~~yi~~-----~~~d~------~g~~i~~aL~~aa~rGV~Vril~-D~~~~~--------- 89 (369)
T PHA03003 31 STYECFDEIISQAKKYIYIASFCCN-----LRSTP------EGRLILDKLKEAAESGVKVTILV-DEQSGD--------- 89 (369)
T ss_pred CHHHHHHHHHHhhhhEEEEEEEEec-----ccCCc------hHHHHHHHHHHhccCCCeEEEEe-cCCCCC---------
Confidence 7899999999999999999998732 23444 68999999999999999999997 975421
Q ss_pred ccccHHHHHHHhcCCcEEEEcCCCCCCCCccccCccceEEecCCCcCcccccceEEEEccccCCCCCcCCCCCcccccCC
Q 004680 242 RTHDEDAFAYFKHTKVICKLCPRLHHKFPTLFAHHQKTITVDARAQDSIFDREIMSFVGGLDLCDGRYDTEKHSLFQTLN 321 (737)
Q Consensus 242 ~~~~~~~~~~l~~~gv~v~~~~r~~~~~~~~~~hHqK~vVVD~~~~~~~~~~~~vAfvGG~nL~~~r~Dt~~H~l~~~l~ 321 (737)
...+.|+.+||++...... .....+.+|.|++|||++ +||+||+||++++.. ..|
T Consensus 90 -----~~~~~L~~~Gv~v~~~~~~--~~~~~~~~~~k~~IiDg~----------~~y~Gg~Ni~~~~~~-~~~------- 144 (369)
T PHA03003 90 -----KDEEELQSSNINYIKVDIG--KLNNVGVLLGSFWVSDDR----------RCYIGNASLTGGSIS-TIK------- 144 (369)
T ss_pred -----ccHHHHHHcCCEEEEEecc--ccCCCCceeeeEEEEcCc----------EEEEecCccCCcccC-ccc-------
Confidence 2356788999998764321 111123468999999999 999999999996442 111
Q ss_pred CCcccCccccccccCcccCCCCCCCCceeccceeeCHHHHHHHHHHHHHhhhccCCCCCcCCCCCCCCCCCCCCCCCCCC
Q 004680 322 SESHCFDFYQINIAGASLHKGGPREPWHDVHACITGEAAWDVLTNFEQRWTKQCDPSLLVPISSIPNLGHKSNIIPSSNY 401 (737)
Q Consensus 322 ~~~~~~d~~~~~~~g~~~~~~~~~~pWhDv~~~v~Gpav~dl~~~F~~rW~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 401 (737)
..+.|+|. ||+|.+|+..|.+.|..++++....... ..... |.. .+. ..
T Consensus 145 ----------------------~~g~~~d~-----g~~v~~l~~~F~~~w~~~~~~~~~~~~~-~~~~~-~~~-~~~-~~ 193 (369)
T PHA03003 145 ----------------------TLGVYSTY-----PPLATDLRRRFDTFKAFNKNKSVFNRLC-CACCL-PVS-TKY-HI 193 (369)
T ss_pred ----------------------cceeEecC-----cHHHHHHHHHHHHHHHhcCCCCcccccc-cccCC-ccc-ccc-cc
Confidence 13579993 9999999999999999776543210000 00000 100 000 00
Q ss_pred CCCCCeeeEEEeecCccchhhhccCccchhHHHHHHHHHHHhccceEEEeeccccCCcccccccccCCCCCccHHHHHHH
Q 004680 402 FNQRNWKVQVFRSIDHVSASQLAKNLTVERSIHEAYVEAIRKAERFIYIENQYFIGGCQLWEKDKHCGCRNLIPIEIALK 481 (737)
Q Consensus 402 ~~~~~~~vqv~rs~~~~~~~~~p~~~~~~~sI~~ayl~aI~~A~~~IyIEnqYFi~~~~~w~~~~~~~~~n~i~~~la~~ 481 (737)
. .....+++.| +|....+. ....++++|+++|.+||++|+|+++||+|.... ++. -....++..+
T Consensus 194 ~--~~~~~~~~~s---~P~~~~~~---~~~~~~~~ll~~I~~Ak~~I~I~t~yf~P~~~~---d~~----~~~~~~i~~A 258 (369)
T PHA03003 194 N--NPIGGVFFSD---SPEHLLGY---SRTLDADVVLHKIKSAKKSIDLELLSLVPVIRE---DDK----TTYWPDIYNA 258 (369)
T ss_pred c--CCCcceEEec---CChHHcCC---CCCcCHHHHHHHHHHHhhEEEEEEeccccEEee---CCC----CccHHHHHHH
Confidence 0 0111234433 33222111 123579999999999999999999999875311 000 0112467788
Q ss_pred HHHHH-HcCCCcEEEEEecCCCCCCCCCCcchhhhhhHHHhHHHHHHHHHHHHHhcCCCCCCcCceEEeeccchhhhccC
Q 004680 482 VVSKI-KAKERFAVYILIPMWPEGVPTSDPVQDILHWTRETMAMMYKLIGEAIQESGQVGHPRDFLNFFCLATREEKKSN 560 (737)
Q Consensus 482 ia~~~-~~g~~v~V~IvlP~~p~g~~~~~~~~~i~~~~~~t~~~~~~~~~~~L~~~gv~~~p~~yl~~~~l~~~~~~~~~ 560 (737)
|.+|+ +|| |+|+|++|.+....+ .. ..+++.|+++|++.. -.+++
T Consensus 259 L~~AAa~RG--V~VRILv~~~~~~~~-----------~~-------~~~~~~L~~~G~~~~--i~vri------------ 304 (369)
T PHA03003 259 LIRAAINRG--VKVRLLVGSWKKNDV-----------YS-------MASVKSLQALCVGND--LSVKV------------ 304 (369)
T ss_pred HHHHHHcCC--CEEEEEEecCCcCCc-----------hh-------hhHHHHHHHcCCCCC--ceEee------------
Confidence 87764 777 999999997521100 00 125678999996420 00111
Q ss_pred CcccCCCCCCCCchhHHhhhccccceeeeeeEEEEeceEEEEeccCCCccccCCCCCcceEEEEecCCCCCcchhhHHHH
Q 004680 561 GEFVPPYSPHPMTQYWNAQMHRRFMVYVHSKLMIVDDVYLLIGSANINQRSMDGQRDTEIAIGCYQLPKNDDQNSEDISA 640 (737)
Q Consensus 561 ~~~~~~~~p~~~~~~~~~~~~r~~~iyvHSK~mIVDD~~~~IGSaNin~RS~~~~~DsEi~v~i~d~~~~~~~~~~~~~~ 640 (737)
|. ...|+|+|||||++++|||+||+.||+..+ .|+++.+++++. ..++..
T Consensus 305 --~~---------------------~~~H~K~~VVD~~~a~iGS~N~d~~s~~~~--~e~~~~~~~~~~-----a~~l~~ 354 (369)
T PHA03003 305 --FR---------------------IPNNTKLLIVDDEFAHITSANFDGTHYLHH--AFVSFNTIDKEL-----VKELSA 354 (369)
T ss_pred --ec---------------------CCCCceEEEEcCCEEEEeccccCchhhccC--CCeEEecCChhH-----HHHHHH
Confidence 10 117999999999999999999999999755 898887776653 355666
Q ss_pred HHHHHHH
Q 004680 641 YRLSLWY 647 (737)
Q Consensus 641 lR~~Lw~ 647 (737)
.-.+.|.
T Consensus 355 ~F~~dW~ 361 (369)
T PHA03003 355 IFERDWT 361 (369)
T ss_pred HHHHHhC
Confidence 6667775
|
|
| >PF12357 PLD_C: Phospholipase D C terminal ; InterPro: IPR024632 Phospholipase D (PLD) catalyses the hydrolysis of the phosphodiester bond of glycerophospholipids to generate phosphatidic acid and a free head group | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.7e-27 Score=192.31 Aligned_cols=73 Identities=48% Similarity=0.818 Sum_probs=71.4
Q ss_pred cccccCCCcHHHHHHHHHhHHhhcccccCCcccCCCCCceeeccCccCCCCCccccCCCcCCCCCCCCCcccccC
Q 004680 654 EGLFREPESLECVQKICSIGDEMWNIYSGEEVVDMDGVHLVTYPVNVTPDGLIEDLVDEGGNFPDTKTPVKGKRS 728 (737)
Q Consensus 654 ~~~~~~p~~~~~~~~~~~~a~~n~~~~~~~~~~~~~g~~L~~~p~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 728 (737)
++.|.+|+|+||+++||++|++||++|+++++++|+| |||+||+.|++||++++|| |+++||||+|||||++|
T Consensus 2 e~~F~~PesleCVr~Vn~iae~nW~~y~~ee~~dl~G-HLl~YPv~V~~dG~V~~Lp-G~e~FPDt~~~VlG~~S 74 (74)
T PF12357_consen 2 EECFLEPESLECVRRVNEIAEENWKQYASEEVTDLPG-HLLKYPVQVDRDGKVTPLP-GCEFFPDTGGKVLGSKS 74 (74)
T ss_pred cccccCCCCHHHHHHHHHHHHHHHHHhhccccccCCC-ccccCCeEEcCCCCEeeCC-CCCcCCCCCCcccCCCC
Confidence 6789999999999999999999999999999999999 9999999999999999999 99999999999999986
|
Phospholipase D activities have been detected in simple to complex organisms from viruses and bacteria to yeast, plants, and mammals []. In higher organisms, PLD specifically catalyzes the hydrolysis of phosphatidylcholine (PC) to phosphatidic acid (PA) and choline and is activated in response to stimulators of vesicle transport, endocytosis, exocytosis, cell migration, and mitosis. This entry represents the C-terminal domain of eukaryotic phospholipase D. The domain is approximately 70 amino acids in length and contains a conserved FPD sequence motif. |
| >PRK05443 polyphosphate kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.2e-18 Score=197.62 Aligned_cols=269 Identities=15% Similarity=0.085 Sum_probs=187.0
Q ss_pred hHHHHHHHHHHcccc-----EEEEEEeecCCceEEeeCCchhhccchHHHHHHHHHHHHHcCCeEEEEEeCCCCCccccc
Q 004680 162 KLWEDVYKAIEGAKH-----LIYIAGWSLNPKMVLVRDSQTEIAHARGVQLGELLKHKAEEGVAVRIMLWDDETSLPIIK 236 (737)
Q Consensus 162 ~~~~~l~~aI~~Ak~-----~I~I~~w~~~~~~~L~r~~~~~~~~~~~~~l~~lL~~kA~rGV~VriLvwD~~~s~~~~~ 236 (737)
+-|+.+++.|++|.+ +|.++-|.+. ....+.++|..||++||+|+||+ +..... -
T Consensus 348 ~SF~~~~~~i~~Aa~DP~V~~Ik~tlYr~~----------------~~s~iv~aL~~Aa~~Gk~V~vlv-e~karf--d- 407 (691)
T PRK05443 348 ESFDPVVEFLRQAAADPDVLAIKQTLYRTS----------------KDSPIVDALIEAAENGKQVTVLV-ELKARF--D- 407 (691)
T ss_pred cCchHHHHHHHHhccCCCeeEEEEEEEEec----------------CCHHHHHHHHHHHHcCCEEEEEE-ccCccc--c-
Confidence 446678999999998 8999988653 24689999999999999999998 654311 0
Q ss_pred cccccccccHHHHHHHhcCCcEEEEcCCCCCCCCccccCccceEEecCCCcCcccccceEEEEccccCCCCCcCCCCCcc
Q 004680 237 NKGVMRTHDEDAFAYFKHTKVICKLCPRLHHKFPTLFAHHQKTITVDARAQDSIFDREIMSFVGGLDLCDGRYDTEKHSL 316 (737)
Q Consensus 237 ~~g~~~~~~~~~~~~l~~~gv~v~~~~r~~~~~~~~~~hHqK~vVVD~~~~~~~~~~~~vAfvGG~nL~~~r~Dt~~H~l 316 (737)
...+..+.+.|..+||+|++-. ..+..|.|+++||++..+ +-+-.+++|+.|+....
T Consensus 408 -----e~~n~~~~~~L~~aGv~V~y~~-------~~~k~HaK~~lid~~e~~---~~~~~~~iGTgN~n~~s-------- 464 (691)
T PRK05443 408 -----EEANIRWARRLEEAGVHVVYGV-------VGLKTHAKLALVVRREGG---GLRRYVHLGTGNYNPKT-------- 464 (691)
T ss_pred -----HHHHHHHHHHHHHcCCEEEEcc-------CCccceeEEEEEEeecCC---ceeEEEEEcCCCCCcch--------
Confidence 1122356778999999996532 146799999999987222 34458899999987741
Q ss_pred cccCCCCcccCccccccccCcccCCCCCCCCceeccceee-CHHHHHHHHHHHHHhhhccCCCCCcCCCCCCCCCCCCCC
Q 004680 317 FQTLNSESHCFDFYQINIAGASLHKGGPREPWHDVHACIT-GEAAWDVLTNFEQRWTKQCDPSLLVPISSIPNLGHKSNI 395 (737)
Q Consensus 317 ~~~l~~~~~~~d~~~~~~~g~~~~~~~~~~pWhDv~~~v~-Gpav~dl~~~F~~rW~~~~~~~~~~~~~~~~~~~~p~~~ 395 (737)
...|.|+.+.+. +..+.++...|...|.......+ .
T Consensus 465 ----------------------------~~~y~D~~l~t~d~~i~~d~~~~F~~l~~~~~~~~~-------~-------- 501 (691)
T PRK05443 465 ----------------------------ARLYTDLSLLTADPEIGEDVTRLFNYLTGYSRPVKL-------R-------- 501 (691)
T ss_pred ----------------------------hhhccceeEEEeChHHHHHHHHHHHHHhCcCccccc-------c--------
Confidence 135789998855 45899999999998754211000 0
Q ss_pred CCCCCCCCCCCeeeEEEeecCccchhhhccCccchhHHHHHHHHHHHhccc----eEEEeeccccCCcccccccccCCCC
Q 004680 396 IPSSNYFNQRNWKVQVFRSIDHVSASQLAKNLTVERSIHEAYVEAIRKAER----FIYIENQYFIGGCQLWEKDKHCGCR 471 (737)
Q Consensus 396 ~~~~~~~~~~~~~vqv~rs~~~~~~~~~p~~~~~~~sI~~ayl~aI~~A~~----~IyIEnqYFi~~~~~w~~~~~~~~~ 471 (737)
.++-| | ......+.+.+...|.+||+ +|+|.++|+..
T Consensus 502 --------------~l~~s----P-------~~~~~~l~~~i~~ei~~Ak~G~~a~I~ik~n~l~d-------------- 542 (691)
T PRK05443 502 --------------KLLVS----P-------FTLRERLLELIDREIANARAGKPARIIAKMNSLVD-------------- 542 (691)
T ss_pred --------------EEeec----C-------ccHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCCCC--------------
Confidence 11111 1 01246789999999999999 99999999653
Q ss_pred CccHHHHHHHHHHHHHcCCCcEEEEEe-------cCCCCCCCCCCcchhhhhhHHHhHHHHHHHHHHHHHhcCCCCCCcC
Q 004680 472 NLIPIEIALKVVSKIKAKERFAVYILI-------PMWPEGVPTSDPVQDILHWTRETMAMMYKLIGEAIQESGQVGHPRD 544 (737)
Q Consensus 472 n~i~~~la~~ia~~~~~g~~v~V~Ivl-------P~~p~g~~~~~~~~~i~~~~~~t~~~~~~~~~~~L~~~gv~~~p~~ 544 (737)
..+..+|..|.++| |+|.|++ |+.|. .+++..+ + +++..|.+ ++++
T Consensus 543 ----~~ii~aL~~As~~G--V~V~liVRGiC~l~pgipg-----~sd~i~v----~-------s~v~r~Le-h~rI---- 595 (691)
T PRK05443 543 ----PQIIDALYEASQAG--VKIDLIVRGICCLRPGVPG-----LSENIRV----R-------SIVGRFLE-HSRI---- 595 (691)
T ss_pred ----HHHHHHHHHHHHCC--CeEEEEEecccccCCCCCC-----CCCCEEE----H-------HHHHHHHh-cCEE----
Confidence 36778888888888 9999998 22221 1222222 1 23444444 2322
Q ss_pred ceEEeeccchhhhccCCcccCCCCCCCCchhHHhhhccccceeeeeeEEEEeceEEEEeccCCCccccCCCCCcceEEEE
Q 004680 545 FLNFFCLATREEKKSNGEFVPPYSPHPMTQYWNAQMHRRFMVYVHSKLMIVDDVYLLIGSANINQRSMDGQRDTEIAIGC 624 (737)
Q Consensus 545 yl~~~~l~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~iyvHSK~mIVDD~~~~IGSaNin~RS~~~~~DsEi~v~i 624 (737)
+.|.+ . ||.+++|||||++.||+. ++.|+++.+
T Consensus 596 ----------------y~f~~--------------------g---------d~~~~~iGSAn~d~Rsl~--~r~Ev~~~i 628 (691)
T PRK05443 596 ----------------YYFGN--------------------G---------GDEEVYISSADWMPRNLD--RRVEVLFPI 628 (691)
T ss_pred ----------------EEEeC--------------------C---------CCcEEEEECCCCCccccc--ceEEEeEEE
Confidence 11211 1 899999999999999996 459999999
Q ss_pred ecCCC
Q 004680 625 YQLPK 629 (737)
Q Consensus 625 ~d~~~ 629 (737)
+|+..
T Consensus 629 ~d~~~ 633 (691)
T PRK05443 629 LDPRL 633 (691)
T ss_pred eCHHH
Confidence 99773
|
|
| >cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD) | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.7e-19 Score=175.45 Aligned_cols=98 Identities=29% Similarity=0.556 Sum_probs=91.4
Q ss_pred ccCCCCcEEEEEECCEEEeecc---CCCCCeEeEEEEEEcCCCc-eEEEEEEecCC--CcccEEEEeehhhhhccccccc
Q 004680 7 FVNGKPTYVTIKIDNKKVAKTS---HEHDRVWNQTFQILCAHPA-DATITITLKTK--CSVLGKIHIQALQILNEASLIS 80 (737)
Q Consensus 7 ~~~~~DPYv~v~l~~~~~~rTk---~~~nP~WnE~F~~~~~~~~-~l~~~V~D~d~--d~~iG~~~ipl~~l~~~g~~~d 80 (737)
..|++||||+|.+++++++||+ ++.||+|||+|.|++++.. .|.|+|+|+|. +++||+++||++++. .|...+
T Consensus 54 ~~g~sDPYv~V~l~~~~~~rT~v~~~~~nP~WnE~F~~~~~~~~~~l~~~V~d~d~~~~~~IG~~~i~l~~l~-~g~~~~ 132 (158)
T cd04015 54 GKITSDPYATVDLAGARVARTRVIENSENPVWNESFHIYCAHYASHVEFTVKDNDVVGAQLIGRAYIPVEDLL-SGEPVE 132 (158)
T ss_pred CCCCcCeEEEEEECCeEeeEEEEeCCCCCCccceEEEEEccCCCCEEEEEEEeCCCcCCcEEEEEEEEhHHcc-CCCCcc
Confidence 4688999999999998888999 8899999999999999988 99999999997 999999999999999 899999
Q ss_pred ceEecccCCCCCC-CCccEEEEEecc
Q 004680 81 GFFPLEMENGKPN-PDLRLRFMLWFK 105 (737)
Q Consensus 81 ~w~~L~~~~~k~~-~~~~l~l~l~f~ 105 (737)
.|++|.+.++++. +.++||++++|+
T Consensus 133 ~w~~L~~~~~~~~~~~~~l~v~~~f~ 158 (158)
T cd04015 133 GWLPILDSNGKPPKPGAKIRVSLQFT 158 (158)
T ss_pred eEEECcCCCCCCCCCCCEEEEEEEEC
Confidence 9999998888887 678999999995
|
PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic |
| >cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip) | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.5e-19 Score=167.67 Aligned_cols=94 Identities=14% Similarity=0.264 Sum_probs=83.8
Q ss_pred cCCCCcEEEEEECCEEEeecc----CCCCCeEeEEEEEEcCCCc-eEEEEEEecCC---CcccEEEEeehh-hhhccccc
Q 004680 8 VNGKPTYVTIKIDNKKVAKTS----HEHDRVWNQTFQILCAHPA-DATITITLKTK---CSVLGKIHIQAL-QILNEASL 78 (737)
Q Consensus 8 ~~~~DPYv~v~l~~~~~~rTk----~~~nP~WnE~F~~~~~~~~-~l~~~V~D~d~---d~~iG~~~ipl~-~l~~~g~~ 78 (737)
.|++||||+|.++++++ ||+ ++.||+|||+|+|+|++.. .|.|+|+|+|. |++||++.|||. .+. .|+.
T Consensus 19 ~g~sDPYv~i~lg~~~~-kT~v~~~~~~nP~WNe~F~f~v~~~~~~l~~~V~d~d~~~~dd~iG~~~i~l~~~~~-~g~~ 96 (121)
T cd04016 19 LTRMDPYCRIRVGHAVY-ETPTAYNGAKNPRWNKTIQCTLPEGVDSIYIEIFDERAFTMDERIAWTHITIPESVF-NGET 96 (121)
T ss_pred CCCCCceEEEEECCEEE-EeEEccCCCCCCccCeEEEEEecCCCcEEEEEEEeCCCCcCCceEEEEEEECchhcc-CCCC
Confidence 48999999999999876 887 4899999999999998877 99999999997 899999999996 577 8998
Q ss_pred ccceEecccCCCCCCCCccEEEEEec
Q 004680 79 ISGFFPLEMENGKPNPDLRLRFMLWF 104 (737)
Q Consensus 79 ~d~w~~L~~~~~k~~~~~~l~l~l~f 104 (737)
++.|++|.+.++++ ..|+|||+|+|
T Consensus 97 ~~~W~~L~~~~~~~-~~g~i~l~l~y 121 (121)
T cd04016 97 LDDWYSLSGKQGED-KEGMINLVFSY 121 (121)
T ss_pred ccccEeCcCccCCC-CceEEEEEEeC
Confidence 99999998766665 45899999987
|
Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian |
| >TIGR03705 poly_P_kin polyphosphate kinase 1 | Back alignment and domain information |
|---|
Probab=99.76 E-value=5e-17 Score=188.38 Aligned_cols=263 Identities=15% Similarity=0.146 Sum_probs=182.4
Q ss_pred hhHHHHHHHHHHcccc-----EEEEEEeecCCceEEeeCCchhhccchHHHHHHHHHHHHHcCCeEEEEEeCCCCCcccc
Q 004680 161 GKLWEDVYKAIEGAKH-----LIYIAGWSLNPKMVLVRDSQTEIAHARGVQLGELLKHKAEEGVAVRIMLWDDETSLPII 235 (737)
Q Consensus 161 ~~~~~~l~~aI~~Ak~-----~I~I~~w~~~~~~~L~r~~~~~~~~~~~~~l~~lL~~kA~rGV~VriLvwD~~~s~~~~ 235 (737)
-+-|+.+.+.|++|.+ +|.|+-|.+. ...++.++|.+||++|++|++|| +-...+.
T Consensus 338 Y~Sf~~v~~~i~~Aa~DP~V~~Ik~tlYr~~----------------~~s~ii~aL~~Aa~~Gk~V~v~v-eLkArfd-- 398 (672)
T TIGR03705 338 YESFDPVVEFLRQAAEDPDVLAIKQTLYRTS----------------KDSPIIDALIEAAENGKEVTVVV-ELKARFD-- 398 (672)
T ss_pred ccCHHHHHHHHHHHhcCCCceEEEEEEEEec----------------CCcHHHHHHHHHHHcCCEEEEEE-Eehhhcc--
Confidence 3456788999999998 8999988663 13589999999999999999999 7321111
Q ss_pred ccccccccccHHHHHHHhcCCcEEEEcCCCCCCCCccccCccceEEecCCCcCcccccceEEEEccccCCCCCcCCCCCc
Q 004680 236 KNKGVMRTHDEDAFAYFKHTKVICKLCPRLHHKFPTLFAHHQKTITVDARAQDSIFDREIMSFVGGLDLCDGRYDTEKHS 315 (737)
Q Consensus 236 ~~~g~~~~~~~~~~~~l~~~gv~v~~~~r~~~~~~~~~~hHqK~vVVD~~~~~~~~~~~~vAfvGG~nL~~~r~Dt~~H~ 315 (737)
...+-++.+.|+.+|++|.+-- ..+..|+|+++||.+..+ .-+-.+++|.-|.... |
T Consensus 399 ------e~~ni~wa~~le~aG~~viyg~-------~~~k~H~K~~li~r~~~~---~~~~y~~igTgN~n~~---t---- 455 (672)
T TIGR03705 399 ------EEANIRWARRLEEAGVHVVYGV-------VGLKTHAKLALVVRREGG---ELRRYVHLGTGNYHPK---T---- 455 (672)
T ss_pred ------chhhHHHHHHHHHcCCEEEEcC-------CCeeeeeEEEEEEEeeCC---ceEEEEEecCCCCCCc---c----
Confidence 0123367778999999998732 247899999999986211 1122456666555443 0
Q ss_pred ccccCCCCcccCccccccccCcccCCCCCCCCceeccce-eeCHHHHHHHHHHHHHhhhccCCCCCcCCCCCCCCCCCCC
Q 004680 316 LFQTLNSESHCFDFYQINIAGASLHKGGPREPWHDVHAC-ITGEAAWDVLTNFEQRWTKQCDPSLLVPISSIPNLGHKSN 394 (737)
Q Consensus 316 l~~~l~~~~~~~d~~~~~~~g~~~~~~~~~~pWhDv~~~-v~Gpav~dl~~~F~~rW~~~~~~~~~~~~~~~~~~~~p~~ 394 (737)
...|.|+++. ..+..+.|+...|..-|........ .
T Consensus 456 -----------------------------a~~y~D~~l~t~~~~i~~d~~~~F~~l~~~~~~~~~-------~------- 492 (672)
T TIGR03705 456 -----------------------------ARLYTDLSLFTADPEIGRDVARVFNYLTGYSRPPKF-------K------- 492 (672)
T ss_pred -----------------------------cccccceeEEEeChHHHHHHHHHHHHhhCCCcchhh-------H-------
Confidence 1468999988 7888999999999987763211100 0
Q ss_pred CCCCCCCCCCCCeeeEEEeecCccchhhhccCccchhHHHHHHHHHHHhccc----eEEEeeccccCCcccccccccCCC
Q 004680 395 IIPSSNYFNQRNWKVQVFRSIDHVSASQLAKNLTVERSIHEAYVEAIRKAER----FIYIENQYFIGGCQLWEKDKHCGC 470 (737)
Q Consensus 395 ~~~~~~~~~~~~~~vqv~rs~~~~~~~~~p~~~~~~~sI~~ayl~aI~~A~~----~IyIEnqYFi~~~~~w~~~~~~~~ 470 (737)
.++ + +|. .....+.+.+.+.|.+||+ +|+|.++||..
T Consensus 493 ---------------~l~-~---~P~-------~~~~~~~~~i~~ei~~Ak~g~~~~I~ik~n~l~D------------- 533 (672)
T TIGR03705 493 ---------------HLL-V---SPF-------TLRKRLLELIDREIENARAGKPARIIAKMNSLVD------------- 533 (672)
T ss_pred ---------------HHH-h---Ccc-------hHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCCC-------------
Confidence 000 0 111 1246788888999999999 99999999653
Q ss_pred CCccHHHHHHHHHHHHHcCCCcEEEEEe----------cCCCCCCCCCCcchhhhhhHHHhHHHHHHHHHHHHHhcCCCC
Q 004680 471 RNLIPIEIALKVVSKIKAKERFAVYILI----------PMWPEGVPTSDPVQDILHWTRETMAMMYKLIGEAIQESGQVG 540 (737)
Q Consensus 471 ~n~i~~~la~~ia~~~~~g~~v~V~Ivl----------P~~p~g~~~~~~~~~i~~~~~~t~~~~~~~~~~~L~~~gv~~ 540 (737)
.++..+|..|.++| |+|.+++ |..++ +..+ ++ ++..+.+
T Consensus 534 -----~~ii~aL~~As~aG--V~V~LivRGiCcL~pgipg~sd--------~i~v----~s-------iv~r~Le----- 582 (672)
T TIGR03705 534 -----PDLIDALYEASQAG--VKIDLIVRGICCLRPGVPGLSE--------NIRV----RS-------IVGRFLE----- 582 (672)
T ss_pred -----HHHHHHHHHHHHCC--CeEEEEEecccccCCCCCCCCC--------CEEE----EE-------EhhHhhC-----
Confidence 36778888888888 9999998 33222 1111 01 2233332
Q ss_pred CCcCceEEeeccchhhhccCCcccCCCCCCCCchhHHhhhccccceeeeeeEEEE---eceEEEEeccCCCccccCCCCC
Q 004680 541 HPRDFLNFFCLATREEKKSNGEFVPPYSPHPMTQYWNAQMHRRFMVYVHSKLMIV---DDVYLLIGSANINQRSMDGQRD 617 (737)
Q Consensus 541 ~p~~yl~~~~l~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~iyvHSK~mIV---DD~~~~IGSaNin~RS~~~~~D 617 (737)
|+|+.++ ||.+++||||||+.|||. +.
T Consensus 583 ------------------------------------------------h~rIy~f~~~~d~~~~igSAn~m~Rnl~--~r 612 (672)
T TIGR03705 583 ------------------------------------------------HSRIYYFGNGGEEKVYISSADWMTRNLD--RR 612 (672)
T ss_pred ------------------------------------------------cCEEEEEeCCCCcEEEEECCCCCCCccc--ce
Confidence 4444443 688999999999999996 55
Q ss_pred cceEEEEecCC
Q 004680 618 TEIAIGCYQLP 628 (737)
Q Consensus 618 sEi~v~i~d~~ 628 (737)
.|+++.++|+.
T Consensus 613 ~E~~~~i~d~~ 623 (672)
T TIGR03705 613 VEVLFPIEDPT 623 (672)
T ss_pred EEEEEEEcCHH
Confidence 99999999976
|
Members of this protein family are the enzyme polyphosphate kinase 1 (PPK1). This family is found in many prokaryotes and also in Dictyostelium. Sequences in the seed alignment were taken from prokaryotic consecutive two-gene pairs in which the other gene encodes an exopolyphosphatase. It synthesizes polyphosphate from the terminal phosphate of ATP but not GTP, in contrast to PPK2. |
| >cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.6e-18 Score=162.20 Aligned_cols=101 Identities=16% Similarity=0.378 Sum_probs=90.5
Q ss_pred CCCcEEEEEECCEEEeecc---CCCCCeEeEEEEEEcCCCc-eEEEEEEec-CC------CcccEEEEeehhhhhccccc
Q 004680 10 GKPTYVTIKIDNKKVAKTS---HEHDRVWNQTFQILCAHPA-DATITITLK-TK------CSVLGKIHIQALQILNEASL 78 (737)
Q Consensus 10 ~~DPYv~v~l~~~~~~rTk---~~~nP~WnE~F~~~~~~~~-~l~~~V~D~-d~------d~~iG~~~ipl~~l~~~g~~ 78 (737)
+.||||+|.|++++++||+ ++.||.|||+|+|++++.. .|+|+|++. +. +++||.+.||+++|. .|+.
T Consensus 26 ~~~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~~~~~~~l~v~v~k~~~~~~~~~~~~~IG~V~Ip~~~l~-~~~~ 104 (146)
T cd04013 26 KKRYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSNLPPVSVITVNLYRESDKKKKKDKSQLIGTVNIPVTDVS-SRQF 104 (146)
T ss_pred cCCceEEEEECCEEEEEEEEEcCCCCCcceeeEEecCCCcccEEEEEEEEccCccccccCCcEEEEEEEEHHHhc-CCCc
Confidence 4589999999999999999 8999999999999999998 999999543 32 689999999999999 8999
Q ss_pred ccceEecccCCCCC-------C-CCccEEEEEeccCCCccc
Q 004680 79 ISGFFPLEMENGKP-------N-PDLRLRFMLWFKPAAYEP 111 (737)
Q Consensus 79 ~d~w~~L~~~~~k~-------~-~~~~l~l~l~f~~~~~~~ 111 (737)
++.||+|.+.++++ . +.++|||+++|+++...|
T Consensus 105 ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~~~~lP 145 (146)
T cd04013 105 VEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQSTRVLP 145 (146)
T ss_pred ccEEEEeecCCCCCccccccccCCCCEEEEEEEEEEeeeCC
Confidence 99999999988886 4 668999999999977654
|
SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas |
| >cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.1e-17 Score=153.23 Aligned_cols=92 Identities=17% Similarity=0.214 Sum_probs=80.8
Q ss_pred ccCCCCcEEEEEECCEEEeecc---CCCCCeEeEEEEEEcCCCc-eEEEEEEecCC---------CcccEEEEeehhhhh
Q 004680 7 FVNGKPTYVTIKIDNKKVAKTS---HEHDRVWNQTFQILCAHPA-DATITITLKTK---------CSVLGKIHIQALQIL 73 (737)
Q Consensus 7 ~~~~~DPYv~v~l~~~~~~rTk---~~~nP~WnE~F~~~~~~~~-~l~~~V~D~d~---------d~~iG~~~ipl~~l~ 73 (737)
..|++||||+|.+++++. ||| +++||+|||+|+|++.+.. .|+|+|+|+|. |++||++.|||+++.
T Consensus 20 ~~g~sDPYv~i~~g~~~~-rTk~~~~~~nP~WnE~f~f~v~~~~~~l~v~V~d~d~~~~~~~~~~dd~lG~~~i~l~~l~ 98 (126)
T cd08379 20 GRGSTDAYCVAKYGPKWV-RTRTVEDSSNPRWNEQYTWPVYDPCTVLTVGVFDNSQSHWKEAVQPDVLIGKVRIRLSTLE 98 (126)
T ss_pred cCCCCCeeEEEEECCEEe-EcCcccCCCCCcceeEEEEEecCCCCEEEEEEEECCCccccccCCCCceEEEEEEEHHHcc
Confidence 358999999999998865 888 8999999999999999887 99999999853 799999999999999
Q ss_pred cccccccceEecccCCCCCC-CCccEEE
Q 004680 74 NEASLISGFFPLEMENGKPN-PDLRLRF 100 (737)
Q Consensus 74 ~~g~~~d~w~~L~~~~~k~~-~~~~l~l 100 (737)
.+...+.|++|.+.++++. ..|+|+.
T Consensus 99 -~~~~~~~~~~L~~~~~~~~~~~g~l~~ 125 (126)
T cd08379 99 -DDRVYAHSYPLLSLNPSGVKKMGELEC 125 (126)
T ss_pred -CCCEEeeEEEeEeCCCCCccCCcEEEe
Confidence 8999999999987765544 6677774
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate |
| >cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.9e-17 Score=149.56 Aligned_cols=98 Identities=20% Similarity=0.333 Sum_probs=86.2
Q ss_pred ccccCCCCcEEEEEECCEEEeecc---CCCCCeEeEEEEEEcCCCc--eEEEEEEecCC--CcccEEEEeehhhhhcccc
Q 004680 5 CVFVNGKPTYVTIKIDNKKVAKTS---HEHDRVWNQTFQILCAHPA--DATITITLKTK--CSVLGKIHIQALQILNEAS 77 (737)
Q Consensus 5 ~~~~~~~DPYv~v~l~~~~~~rTk---~~~nP~WnE~F~~~~~~~~--~l~~~V~D~d~--d~~iG~~~ipl~~l~~~g~ 77 (737)
..++|++||||+|.++++.+.||+ ++.||+|||+|.|.+.+.. .|.|+|+|++. +++||++.+||+++.+.+.
T Consensus 7 ~~~~G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~d~~iG~~~v~L~~l~~~~~ 86 (111)
T cd04052 7 ESKTGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDRHDPVLGSVSISLNDLIDATS 86 (111)
T ss_pred cccCCCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCCCCCeEEEEEecHHHHHhhhh
Confidence 457899999999999987777887 8999999999999998864 79999999997 9999999999999974566
Q ss_pred cccceEecccCCCCCCCCccEEEEEeccCC
Q 004680 78 LISGFFPLEMENGKPNPDLRLRFMLWFKPA 107 (737)
Q Consensus 78 ~~d~w~~L~~~~~k~~~~~~l~l~l~f~~~ 107 (737)
..+.|++|.+ + ..|+|+++++|+|+
T Consensus 87 ~~~~w~~L~~---~--~~G~i~~~~~~~p~ 111 (111)
T cd04052 87 VGQQWFPLSG---N--GQGRIRISALWKPV 111 (111)
T ss_pred ccceeEECCC---C--CCCEEEEEEEEecC
Confidence 6799999974 2 35899999999986
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1) | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.6e-17 Score=151.93 Aligned_cols=99 Identities=20% Similarity=0.293 Sum_probs=85.3
Q ss_pred ccCCCCcEEEEEECCEEEeecc--CCCCCeEeEEEEEEcCCCc--eEEEEEEecCC---CcccEEEEeehhhhhcccccc
Q 004680 7 FVNGKPTYVTIKIDNKKVAKTS--HEHDRVWNQTFQILCAHPA--DATITITLKTK---CSVLGKIHIQALQILNEASLI 79 (737)
Q Consensus 7 ~~~~~DPYv~v~l~~~~~~rTk--~~~nP~WnE~F~~~~~~~~--~l~~~V~D~d~---d~~iG~~~ipl~~l~~~g~~~ 79 (737)
..+++||||+|.++++++.||+ ++.||+|||+|.|++.... .++|.|+|++. |++||.+.|||+++. .|...
T Consensus 18 ~~~~~DPYv~v~l~~~~~~kT~v~~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~~d~~iG~v~i~l~~l~-~~~~~ 96 (126)
T cd08400 18 VKHVPHPYCVISLNEVKVARTKVREGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRSKDSEIAEVTVQLSKLQ-NGQET 96 (126)
T ss_pred CCCCCCeeEEEEECCEeEEEeecCCCCCCccCCEEEEecCCCCcCEEEEEEEECCCCCCCCeEEEEEEEHhHcc-CCCcc
Confidence 3568999999999998888998 8999999999999976554 88999999986 999999999999999 89999
Q ss_pred cceEecccCCCCC-CCCccEEEEEeccC
Q 004680 80 SGFFPLEMENGKP-NPDLRLRFMLWFKP 106 (737)
Q Consensus 80 d~w~~L~~~~~k~-~~~~~l~l~l~f~~ 106 (737)
+.|++|...+.++ ...|+|+|+|+|.+
T Consensus 97 ~~W~~L~~~~~~~~~~~G~i~l~l~~~~ 124 (126)
T cd08400 97 DEWYPLSSASPLKGGEWGSLRIRARYSH 124 (126)
T ss_pred cEeEEcccCCCCCCCcCcEEEEEEEEEc
Confidence 9999998654322 25689999999986
|
RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki |
| >cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.70 E-value=1e-16 Score=148.86 Aligned_cols=98 Identities=15% Similarity=0.173 Sum_probs=87.5
Q ss_pred ccCCCCcEEEEEECCEEEeecc---CCCCCeEeEEEEEEcCCCc-eEEEEEEecCC---CcccEEEEeehhhhhcccccc
Q 004680 7 FVNGKPTYVTIKIDNKKVAKTS---HEHDRVWNQTFQILCAHPA-DATITITLKTK---CSVLGKIHIQALQILNEASLI 79 (737)
Q Consensus 7 ~~~~~DPYv~v~l~~~~~~rTk---~~~nP~WnE~F~~~~~~~~-~l~~~V~D~d~---d~~iG~~~ipl~~l~~~g~~~ 79 (737)
..|++||||++.++++.+.||+ ++.||+|||+|.|.+.+.. .|.|+|+|+|. +++||.+.+||+++. .+...
T Consensus 17 ~~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~l~~~v~D~d~~~~~~~iG~~~~~l~~l~-~~~~~ 95 (121)
T cd04042 17 RGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDVTQPLYIKVFDYDRGLTDDFMGSAFVDLSTLE-LNKPT 95 (121)
T ss_pred CCCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecCCCCeEEEEEEeCCCCCCCcceEEEEEEHHHcC-CCCCe
Confidence 3579999999999987778888 9999999999999998877 99999999987 899999999999999 89899
Q ss_pred cceEecccCCCCCCCCccEEEEEeccC
Q 004680 80 SGFFPLEMENGKPNPDLRLRFMLWFKP 106 (737)
Q Consensus 80 d~w~~L~~~~~k~~~~~~l~l~l~f~~ 106 (737)
+.|++|.++++.. ..|+|+|.++|.|
T Consensus 96 ~~~~~L~~~~~~~-~~G~l~l~~~~~~ 121 (121)
T cd04042 96 EVKLKLEDPNSDE-DLGYISLVVTLTP 121 (121)
T ss_pred EEEEECCCCCCcc-CceEEEEEEEECC
Confidence 9999998765422 4689999999987
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein |
| >cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3 | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.2e-16 Score=148.68 Aligned_cols=96 Identities=17% Similarity=0.238 Sum_probs=82.9
Q ss_pred cCCCCcEEEEEECCEEEeecc---CCCCCeEeEEEEEEcCCCc-eEEEEEEecCC---CcccEEEEeehhhhhccccccc
Q 004680 8 VNGKPTYVTIKIDNKKVAKTS---HEHDRVWNQTFQILCAHPA-DATITITLKTK---CSVLGKIHIQALQILNEASLIS 80 (737)
Q Consensus 8 ~~~~DPYv~v~l~~~~~~rTk---~~~nP~WnE~F~~~~~~~~-~l~~~V~D~d~---d~~iG~~~ipl~~l~~~g~~~d 80 (737)
.|++||||+|.++++.++||+ +|+||+|||+|.|.+.+.. .|.|+|+|+|. +++||.+.++++++. .+...+
T Consensus 19 ~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~~~~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~-~~~~~~ 97 (121)
T cd08401 19 NKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRTFRHLSFYIYDRDVLRRDSVIGKVAIKKEDLH-KYYGKD 97 (121)
T ss_pred CCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCCCCCEEEEEEEECCCCCCCceEEEEEEEHHHcc-CCCCcE
Confidence 468999999999988788998 9999999999999998776 99999999997 899999999999999 788899
Q ss_pred ceEecccCCCCCCCCccEEEEEec
Q 004680 81 GFFPLEMENGKPNPDLRLRFMLWF 104 (737)
Q Consensus 81 ~w~~L~~~~~k~~~~~~l~l~l~f 104 (737)
.|++|..........|+||++++|
T Consensus 98 ~w~~L~~~~~~~~~~G~i~l~~~~ 121 (121)
T cd08401 98 TWFPLQPVDADSEVQGKVHLELRL 121 (121)
T ss_pred eeEEEEccCCCCcccEEEEEEEEC
Confidence 999997422111146899999876
|
RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p |
| >cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.1e-16 Score=145.99 Aligned_cols=96 Identities=18% Similarity=0.264 Sum_probs=80.8
Q ss_pred ccCCCCcEEEEEECCEEEeecc---CCCCCeEeEEEEEEcCC------Cc-eEEEEEEecCC---CcccEEEEeehhhhh
Q 004680 7 FVNGKPTYVTIKIDNKKVAKTS---HEHDRVWNQTFQILCAH------PA-DATITITLKTK---CSVLGKIHIQALQIL 73 (737)
Q Consensus 7 ~~~~~DPYv~v~l~~~~~~rTk---~~~nP~WnE~F~~~~~~------~~-~l~~~V~D~d~---d~~iG~~~ipl~~l~ 73 (737)
..|++||||+|.+++.+. ||+ ++.||+|||+|.|.+.+ .. .|.|+|+|++. |++||++.|||+++.
T Consensus 16 ~~g~~dpYv~v~l~~~~~-kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~i~l~~l~ 94 (126)
T cd08682 16 KSGTNDAYVIIQLGKEKY-STSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLLGLDKFLGQVSIPLNDLD 94 (126)
T ss_pred CCcCCCceEEEEECCeee-eeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccccCCCceeEEEEEEHHHhh
Confidence 457899999999987654 888 89999999999999876 24 99999999986 899999999999987
Q ss_pred c-ccccccceEecccCCCCCC-CCccEEEEEe
Q 004680 74 N-EASLISGFFPLEMENGKPN-PDLRLRFMLW 103 (737)
Q Consensus 74 ~-~g~~~d~w~~L~~~~~k~~-~~~~l~l~l~ 103 (737)
. .+...+.|++|.+..+++. ..|+|+|++|
T Consensus 95 ~~~~~~~~~W~~L~~~~~~~~~~~Gei~l~~~ 126 (126)
T cd08682 95 EDKGRRRTRWFKLESKPGKDDKERGEIEVDIQ 126 (126)
T ss_pred ccCCCcccEEEECcCCCCCCccccceEEEEeC
Confidence 3 4677899999986555433 5689999875
|
Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member |
| >cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.65 E-value=7.1e-16 Score=148.74 Aligned_cols=107 Identities=18% Similarity=0.276 Sum_probs=86.7
Q ss_pred ccCCCCcEEEEEECCEEEeecc---C-CCCCeEeEEEEEEcCCCc--eEEEEEEecCC---CcccEEEEeehhhhhc---
Q 004680 7 FVNGKPTYVTIKIDNKKVAKTS---H-EHDRVWNQTFQILCAHPA--DATITITLKTK---CSVLGKIHIQALQILN--- 74 (737)
Q Consensus 7 ~~~~~DPYv~v~l~~~~~~rTk---~-~~nP~WnE~F~~~~~~~~--~l~~~V~D~d~---d~~iG~~~ipl~~l~~--- 74 (737)
..|++||||+|.++++. .||+ + +.||+|||+|.|.+.++. .|.|+|+|++. |++||++.|||+++..
T Consensus 17 ~~g~sDPYV~v~l~~~~-~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~dd~lG~v~i~L~~l~~~~~ 95 (150)
T cd04019 17 KNRVPEVFVKAQLGNQV-LRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKDEPLGRAVIPLNDIERRVD 95 (150)
T ss_pred CCCCCCeEEEEEECCEE-eeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCCCCeEEEEEEEHHHCcccCC
Confidence 34799999999999854 4777 4 699999999999998764 99999999986 8999999999999972
Q ss_pred ccccccceEecccCCC-----CCC-CCccEEEEEeccCCCccccccccccC
Q 004680 75 EASLISGFFPLEMENG-----KPN-PDLRLRFMLWFKPAAYEPTWGKIISN 119 (737)
Q Consensus 75 ~g~~~d~w~~L~~~~~-----k~~-~~~~l~l~l~f~~~~~~~~w~~g~~~ 119 (737)
.+..++.|++|.+..+ |+. ..|+|+|+++|.+ .|+-.+.+
T Consensus 96 ~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~-----~~~~~~~~ 141 (150)
T cd04019 96 DRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDG-----GYHVLDES 141 (150)
T ss_pred CCccCCceEECcCCCCcccccccCcccccEEEEEEecC-----cceEeecc
Confidence 2356899999987654 333 5689999999985 45444444
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates |
| >cd08373 C2A_Ferlin C2 domain first repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.1e-15 Score=143.10 Aligned_cols=102 Identities=20% Similarity=0.306 Sum_probs=89.6
Q ss_pred ccCCCCcEEEEEECCEEEeecc---CCCCCeEeEEEEEEcCCC---c-eEEEEEEecCC---CcccEEEEeehhhhhccc
Q 004680 7 FVNGKPTYVTIKIDNKKVAKTS---HEHDRVWNQTFQILCAHP---A-DATITITLKTK---CSVLGKIHIQALQILNEA 76 (737)
Q Consensus 7 ~~~~~DPYv~v~l~~~~~~rTk---~~~nP~WnE~F~~~~~~~---~-~l~~~V~D~d~---d~~iG~~~ipl~~l~~~g 76 (737)
..|++||||+|.+++.+ .||+ ++.||+|||+|.|++.+. . .|.|+|+|++. +++||++.++|+++. .+
T Consensus 11 ~~g~~Dpyv~v~~~~~~-~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~~~l~~l~-~~ 88 (127)
T cd08373 11 LKGKGDRIAKVTFRGVK-KKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIGSATVSLQDLV-SE 88 (127)
T ss_pred cCCCCCCEEEEEECCEe-eecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEEEEEEEhhHcc-cC
Confidence 46789999999998865 4888 899999999999999764 3 99999999986 899999999999999 88
Q ss_pred ccccceEecccCCCCCCCCccEEEEEeccCCCccc
Q 004680 77 SLISGFFPLEMENGKPNPDLRLRFMLWFKPAAYEP 111 (737)
Q Consensus 77 ~~~d~w~~L~~~~~k~~~~~~l~l~l~f~~~~~~~ 111 (737)
...+.|++|.+.++++. .|+|++.++|.|.+.+.
T Consensus 89 ~~~~~~~~L~~~~~~~~-~~~l~l~~~~~~~~~~~ 122 (127)
T cd08373 89 GLLEVTEPLLDSNGRPT-GATISLEVSYQPPDGAV 122 (127)
T ss_pred CceEEEEeCcCCCCCcc-cEEEEEEEEEeCCCCcc
Confidence 88999999987777664 57999999999977653
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein | Back alignment and domain information |
|---|
Probab=99.61 E-value=4e-15 Score=139.32 Aligned_cols=101 Identities=13% Similarity=0.201 Sum_probs=84.4
Q ss_pred ccCCCCcEEEEEECC-EEEeecc---CCCCCeEeEEEEEEcCCCc-eEEEEEEecCC---CcccEEEEeehhhhhccccc
Q 004680 7 FVNGKPTYVTIKIDN-KKVAKTS---HEHDRVWNQTFQILCAHPA-DATITITLKTK---CSVLGKIHIQALQILNEASL 78 (737)
Q Consensus 7 ~~~~~DPYv~v~l~~-~~~~rTk---~~~nP~WnE~F~~~~~~~~-~l~~~V~D~d~---d~~iG~~~ipl~~l~~~g~~ 78 (737)
..|++||||++.+++ ....||+ ++.||+|||+|.|.+.... .|.|+|+|+|. +++||++.|+++++. .+..
T Consensus 14 ~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~l~-~~~~ 92 (126)
T cd08678 14 AAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSPNSKELLFEVYDNGKKSDSKFLGLAIVPFDELR-KNPS 92 (126)
T ss_pred CCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCCCCCEEEEEEEECCCCCCCceEEEEEEeHHHhc-cCCc
Confidence 347999999999975 3345777 8999999999999997666 99999999986 899999999999999 7777
Q ss_pred ccceEecccCCCC-CCCCccEEEEEeccCCC
Q 004680 79 ISGFFPLEMENGK-PNPDLRLRFMLWFKPAA 108 (737)
Q Consensus 79 ~d~w~~L~~~~~k-~~~~~~l~l~l~f~~~~ 108 (737)
.+.|++|....++ ....|+|++.++|.+-.
T Consensus 93 ~~~~~~L~~~~~~~~~~~G~l~l~~~~~~~~ 123 (126)
T cd08678 93 GRQIFPLQGRPYEGDSVSGSITVEFLFMEPA 123 (126)
T ss_pred eeEEEEecCCCCCCCCcceEEEEEEEEeccc
Confidence 8899999754332 12578999999998754
|
The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a |
| >cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Probab=99.60 E-value=5.8e-15 Score=137.26 Aligned_cols=97 Identities=14% Similarity=0.271 Sum_probs=80.7
Q ss_pred ccCCCCcEEEEEECCEEEeecc---CCCCCeEeEEEEEEcCCCc-eEEEEEEecCC---CcccEEEEeehhhhhcccccc
Q 004680 7 FVNGKPTYVTIKIDNKKVAKTS---HEHDRVWNQTFQILCAHPA-DATITITLKTK---CSVLGKIHIQALQILNEASLI 79 (737)
Q Consensus 7 ~~~~~DPYv~v~l~~~~~~rTk---~~~nP~WnE~F~~~~~~~~-~l~~~V~D~d~---d~~iG~~~ipl~~l~~~g~~~ 79 (737)
..|++||||+|.++++.++||+ ++.||+|||+|.|++.+.. .|.|+|+|++. |++||++.++++.+...+...
T Consensus 17 ~~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~~~~~l~v~v~d~~~~~~d~~iG~~~~~~~~~~~~~~~~ 96 (121)
T cd04054 17 ITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPGFHTVSFYVLDEDTLSRDDVIGKVSLTREVISAHPRGI 96 (121)
T ss_pred CCCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeCCCCCEEEEEEEECCCCCCCCEEEEEEEcHHHhccCCCCC
Confidence 3578999999999998888998 8999999999999998876 99999999986 899999999999988334568
Q ss_pred cceEecccCCCCCCCCccEEEEEe
Q 004680 80 SGFFPLEMENGKPNPDLRLRFMLW 103 (737)
Q Consensus 80 d~w~~L~~~~~k~~~~~~l~l~l~ 103 (737)
+.|++|...++.....|+|++.++
T Consensus 97 ~~W~~L~~~~~~~~~~G~i~l~~~ 120 (121)
T cd04054 97 DGWMNLTEVDPDEEVQGEIHLELS 120 (121)
T ss_pred CcEEECeeeCCCCccccEEEEEEE
Confidence 999999653222123578988765
|
Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. |
| >PHA02820 phospholipase-D-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.4e-14 Score=162.01 Aligned_cols=164 Identities=20% Similarity=0.221 Sum_probs=118.6
Q ss_pred CCeeeEEEeecCccchhhhccCccchhHHHHHHHHHHHhccceEEEeeccccCCcccccccccCCCCCccHHHHHHHHHH
Q 004680 405 RNWKVQVFRSIDHVSASQLAKNLTVERSIHEAYVEAIRKAERFIYIENQYFIGGCQLWEKDKHCGCRNLIPIEIALKVVS 484 (737)
Q Consensus 405 ~~~~vqv~rs~~~~~~~~~p~~~~~~~sI~~ayl~aI~~A~~~IyIEnqYFi~~~~~w~~~~~~~~~n~i~~~la~~ia~ 484 (737)
.+|.++++.|+|.+- .|+. ...+..++|+++|.+||++|+|+++||+++... ...++..+..+|++
T Consensus 4 ~~~~~~~vesiP~~~--~~~~---~~~~t~~~~~~lI~~Ak~~I~I~s~yf~~~d~~---------~~~~G~~i~~aL~~ 69 (424)
T PHA02820 4 DNTIAVITETIPIGM--QFDK---VYLSTFNFWREILSNTTKTLDISSFYWSLSDEV---------GTNFGTMILNEIIQ 69 (424)
T ss_pred cccEEEEEEecCCCC--CCCC---CCCCHHHHHHHHHHhhCcEEEEEeEEEecCccc---------cchhHHHHHHHHHH
Confidence 356789999999765 3432 357999999999999999999999999954210 11235678999999
Q ss_pred HHHcCCCcEEEEEecCCCCCCCCCCcchhhhhhHHHhHHHHHHHHHHHHHhcCCCCCCcCceEEeeccchhhhccCCccc
Q 004680 485 KIKAKERFAVYILIPMWPEGVPTSDPVQDILHWTRETMAMMYKLIGEAIQESGQVGHPRDFLNFFCLATREEKKSNGEFV 564 (737)
Q Consensus 485 ~~~~g~~v~V~IvlP~~p~g~~~~~~~~~i~~~~~~t~~~~~~~~~~~L~~~gv~~~p~~yl~~~~l~~~~~~~~~~~~~ 564 (737)
|+++| |+|+|+++.. +.+ ....+.|+++|+++. .|.. ..+.
T Consensus 70 aA~rG--V~VRIL~d~~--~~~--------------------~~~~~~L~~aGv~v~------~~~~---------~~~~ 110 (424)
T PHA02820 70 LPKRG--VRVRIAVNKS--NKP--------------------LKDVELLQMAGVEVR------YIDI---------TNIL 110 (424)
T ss_pred HHHCC--CEEEEEECCC--CCc--------------------hhhHHHHHhCCCEEE------EEec---------CCCC
Confidence 98888 9999999952 111 013467899998752 1110 0011
Q ss_pred CCCCCCCCchhHHhhhccccceeeeeeEEEEeceEEEEeccCCCccccCCCCCcceEEEEecCCCCCcchhhHHHHHHHH
Q 004680 565 PPYSPHPMTQYWNAQMHRRFMVYVHSKLMIVDDVYLLIGSANINQRSMDGQRDTEIAIGCYQLPKNDDQNSEDISAYRLS 644 (737)
Q Consensus 565 ~~~~p~~~~~~~~~~~~r~~~iyvHSK~mIVDD~~~~IGSaNin~RS~~~~~DsEi~v~i~d~~~~~~~~~~~~~~lR~~ 644 (737)
....|+|+||||+++++|||+||+.||+..+ .|+++.+.+... ....+.....+
T Consensus 111 --------------------~~~~HrK~~VIDg~~~~iGS~Nid~rsl~~n--~E~gv~i~~~g~----~v~~L~~~F~~ 164 (424)
T PHA02820 111 --------------------GGVLHTKFWISDNTHIYLGSANMDWRSLTQV--KELGIAIFNNSN----LAADLTQIFEV 164 (424)
T ss_pred --------------------cccceeeEEEECCCEEEEeCCcCChhhhhhC--CceEEEEecchH----HHHHHHHHHHH
Confidence 1469999999999999999999999999655 899888765221 23455666678
Q ss_pred HHH
Q 004680 645 LWY 647 (737)
Q Consensus 645 Lw~ 647 (737)
.|.
T Consensus 165 dW~ 167 (424)
T PHA02820 165 YWY 167 (424)
T ss_pred HHH
Confidence 884
|
|
| >cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.6e-15 Score=137.01 Aligned_cols=93 Identities=13% Similarity=0.269 Sum_probs=79.5
Q ss_pred ccCCCCcEEEEEECCEEEeecc----CCCCCeEeEEEEEEcCCCc--eEEEEEEecCC--CcccEEEEeehhhhhccccc
Q 004680 7 FVNGKPTYVTIKIDNKKVAKTS----HEHDRVWNQTFQILCAHPA--DATITITLKTK--CSVLGKIHIQALQILNEASL 78 (737)
Q Consensus 7 ~~~~~DPYv~v~l~~~~~~rTk----~~~nP~WnE~F~~~~~~~~--~l~~~V~D~d~--d~~iG~~~ipl~~l~~~g~~ 78 (737)
..+++||||+|.+++. +.||+ ++.||+|||+|.|.+.+.. .|.|+|+|++. +++||++.++++++. .+..
T Consensus 18 ~~~~~dpyv~v~~~~~-~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~~~~iG~~~~~l~~~~-~~~~ 95 (118)
T cd08681 18 KLDKQDPYCVLRIGGV-TKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKRKPDLIGDTEVDLSPAL-KEGE 95 (118)
T ss_pred cCCCCCceEEEEECCC-ccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCCCcceEEEEEecHHHh-hcCC
Confidence 4578999999999884 35776 4789999999999998754 89999999987 899999999999998 6777
Q ss_pred ccceEecccCCCCCCCCccEEEEEec
Q 004680 79 ISGFFPLEMENGKPNPDLRLRFMLWF 104 (737)
Q Consensus 79 ~d~w~~L~~~~~k~~~~~~l~l~l~f 104 (737)
.+.|++|.. +++ ..|+|+++|+|
T Consensus 96 ~~~w~~L~~-~~~--~~G~i~l~l~f 118 (118)
T cd08681 96 FDDWYELTL-KGR--YAGEVYLELTF 118 (118)
T ss_pred CCCcEEecc-CCc--EeeEEEEEEEC
Confidence 899999974 444 45899999987
|
Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr |
| >cd00138 PLDc Phospholipase D | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.1e-14 Score=141.73 Aligned_cols=145 Identities=23% Similarity=0.279 Sum_probs=110.7
Q ss_pred hhHHHHHHHHHHccccEEEEEEeecCCceEEeeCCchhhccchHHHHHHHHHHHHHcCCeEEEEEeCCCCCccccccccc
Q 004680 161 GKLWEDVYKAIEGAKHLIYIAGWSLNPKMVLVRDSQTEIAHARGVQLGELLKHKAEEGVAVRIMLWDDETSLPIIKNKGV 240 (737)
Q Consensus 161 ~~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~L~r~~~~~~~~~~~~~l~~lL~~kA~rGV~VriLvwD~~~s~~~~~~~g~ 240 (737)
.++++.++++|.+|+++|+|+.|.|++.. .. ....|.+.|++++++||+|+||+ |........
T Consensus 20 ~~~~~~i~~~I~~A~~~I~i~~~~~~~~~----~~-------~~~~l~~~L~~a~~rGv~V~il~-~~~~~~~~~----- 82 (176)
T cd00138 20 RSDLDALLEAISNAKKSIYIASFYLSPLI----TE-------YGPVILDALLAAARRGVKVRILV-DEWSNTDLK----- 82 (176)
T ss_pred chHHHHHHHHHHhhheEEEEEEeEecccc----cc-------cchHHHHHHHHHHHCCCEEEEEE-cccccCCch-----
Confidence 68999999999999999999999876432 01 35789999999999999999998 443322110
Q ss_pred cccccHHHHHHHhcC---CcEEEEcCCCCCCCCccccCccceEEecCCCcCcccccceEEEEccccCCCCCcCCCCCccc
Q 004680 241 MRTHDEDAFAYFKHT---KVICKLCPRLHHKFPTLFAHHQKTITVDARAQDSIFDREIMSFVGGLDLCDGRYDTEKHSLF 317 (737)
Q Consensus 241 ~~~~~~~~~~~l~~~---gv~v~~~~r~~~~~~~~~~hHqK~vVVD~~~~~~~~~~~~vAfvGG~nL~~~r~Dt~~H~l~ 317 (737)
........|+.. ++++...+... ....++|+|++|||++ ++++||.|+...++.
T Consensus 83 ---~~~~~~~~l~~~~~~~i~~~~~~~~~---~~~~~~H~K~~iiD~~----------~~~vGS~N~~~~~~~------- 139 (176)
T cd00138 83 ---ISSAYLDSLRALLDIGVRVFLIRTDK---TYGGVLHTKLVIVDDE----------TAYIGSANLDGRSLT------- 139 (176)
T ss_pred ---HHHHHHHHHHHhhcCceEEEEEcCCc---ccccceeeeEEEEcCC----------EEEEECCcCChhhhh-------
Confidence 012344555544 78886544211 0357999999999999 999999999986442
Q ss_pred ccCCCCcccCccccccccCcccCCCCCCCCceeccceeeCH--HHHHHHHHHHHHhhhc
Q 004680 318 QTLNSESHCFDFYQINIAGASLHKGGPREPWHDVHACITGE--AAWDVLTNFEQRWTKQ 374 (737)
Q Consensus 318 ~~l~~~~~~~d~~~~~~~g~~~~~~~~~~pWhDv~~~v~Gp--av~dl~~~F~~rW~~~ 374 (737)
.++|+.+.+++| +|.++.+.|.+.|+..
T Consensus 140 -----------------------------~~~e~~~~~~~~~~~~~~~~~~f~~~w~~~ 169 (176)
T cd00138 140 -----------------------------LNSEVGVVIYDPASLAADLKASLERDWNST 169 (176)
T ss_pred -----------------------------hhcceEEEEeChHHHHHHHHHHHHHHHhcC
Confidence 457899999999 7999999999999964
|
Active site motifs; The PLD superfamily includes enzymes involved in signal transduction, lipid biosynthesis, endonucleases and open reading frames in pathogenic viruses and bacteria. PLD hydrolyzes the terminal phosphodiester bond of phospholipids to phosphatidic acid and a hydrophilic constituent. Phosphatidic acid is a compound that is heavily involved in signal transduction. The common features of the family members are that they can bind to a phosphodiester moiety, and that most of these enzymes are active as bi-lobed monomers or dimers. |
| >cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.1e-14 Score=137.44 Aligned_cols=90 Identities=20% Similarity=0.337 Sum_probs=79.5
Q ss_pred CCCCcEEEEEECCEEEeecc---CCCCCeEeEEEEEEcCCCceEEEEEEecCC---CcccEEEEeehhhhhcc--ccccc
Q 004680 9 NGKPTYVTIKIDNKKVAKTS---HEHDRVWNQTFQILCAHPADATITITLKTK---CSVLGKIHIQALQILNE--ASLIS 80 (737)
Q Consensus 9 ~~~DPYv~v~l~~~~~~rTk---~~~nP~WnE~F~~~~~~~~~l~~~V~D~d~---d~~iG~~~ipl~~l~~~--g~~~d 80 (737)
+++||||+|.++++++.||+ ++.||+|||+|.|++.+...|.|.|+|++. +++||++.++|+++. . +...+
T Consensus 33 g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~-~~~~~~~~ 111 (132)
T cd04014 33 QLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVHNGRNLELTVFHDAAIGPDDFVANCTISFEDLI-QRGSGSFD 111 (132)
T ss_pred cCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcCCCCEEEEEEEeCCCCCCCceEEEEEEEhHHhc-ccCCCccc
Confidence 68999999999998888887 899999999999999754499999999875 899999999999999 5 67789
Q ss_pred ceEecccCCCCCCCCccEEEEEeccC
Q 004680 81 GFFPLEMENGKPNPDLRLRFMLWFKP 106 (737)
Q Consensus 81 ~w~~L~~~~~k~~~~~~l~l~l~f~~ 106 (737)
.|++|. +.|+|+++++|..
T Consensus 112 ~w~~L~-------~~G~l~l~~~~~~ 130 (132)
T cd04014 112 LWVDLE-------PQGKLHVKIELKG 130 (132)
T ss_pred EEEEcc-------CCcEEEEEEEEec
Confidence 999995 2468999999864
|
A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that |
| >cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.58 E-value=7.2e-15 Score=136.72 Aligned_cols=94 Identities=20% Similarity=0.339 Sum_probs=79.1
Q ss_pred CCCcEEEEEECCEEEeecc---CCCCCeEeEEEEEEcCCCc--eEEEEEEecCC--CcccEEEEeehhhhhcc----ccc
Q 004680 10 GKPTYVTIKIDNKKVAKTS---HEHDRVWNQTFQILCAHPA--DATITITLKTK--CSVLGKIHIQALQILNE----ASL 78 (737)
Q Consensus 10 ~~DPYv~v~l~~~~~~rTk---~~~nP~WnE~F~~~~~~~~--~l~~~V~D~d~--d~~iG~~~ipl~~l~~~----g~~ 78 (737)
++||||+|.+++. ..||+ ++.||+|||+|.|.+.+.. .|.|+|+|+|. +++||++.|+|+++... +..
T Consensus 16 ~~Dpyv~v~l~~~-~~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~~~~~lG~~~i~l~~l~~~~~~~~~~ 94 (121)
T cd08378 16 SNDPVVEVKLGNY-KGSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKAKDDFLGGVCFDLSEVPTRVPPDSPL 94 (121)
T ss_pred cCCCEEEEEECCc-cccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCCCcCceeeeEEEEhHhCcCCCCCCCCC
Confidence 7899999999874 56888 8999999999999998754 89999999997 99999999999999731 234
Q ss_pred ccceEecccCCCCCCCCccEEEEEecc
Q 004680 79 ISGFFPLEMENGKPNPDLRLRFMLWFK 105 (737)
Q Consensus 79 ~d~w~~L~~~~~k~~~~~~l~l~l~f~ 105 (737)
.+.|++|.+..+.. ..|+|+|+++|-
T Consensus 95 ~~~W~~L~~~~~~~-~~G~i~l~~~~~ 120 (121)
T cd08378 95 APQWYRLEDKKGGR-VGGELMLAVWFG 120 (121)
T ss_pred CcceEEccCCCCCc-cceEEEEEEEec
Confidence 67999998765422 468999999984
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate |
| >cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.2e-14 Score=136.16 Aligned_cols=99 Identities=16% Similarity=0.311 Sum_probs=81.6
Q ss_pred ccCCCCcEEEEEECCEEEeecc---CCCCCeEeEEEEEEcCCCc-----eEEEEEEecCC----CcccEEEEeehhhhhc
Q 004680 7 FVNGKPTYVTIKIDNKKVAKTS---HEHDRVWNQTFQILCAHPA-----DATITITLKTK----CSVLGKIHIQALQILN 74 (737)
Q Consensus 7 ~~~~~DPYv~v~l~~~~~~rTk---~~~nP~WnE~F~~~~~~~~-----~l~~~V~D~d~----d~~iG~~~ipl~~l~~ 74 (737)
..|++||||+|.+++++. ||+ ++.||+|||+|.|.+.+.. .|+|+|+|++. +++||++.|+++++..
T Consensus 17 ~~g~~dpyv~v~~~~~~~-rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~~~d~~lG~v~i~l~~l~~ 95 (127)
T cd04022 17 GQGSSSAYVELDFDGQKK-RTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSGRRRSFLGRVRISGTSFVP 95 (127)
T ss_pred CCCCcCcEEEEEECCEEe-cceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCcCCCCeeeEEEEcHHHcCC
Confidence 357899999999998764 887 8999999999999997642 69999999874 8999999999999974
Q ss_pred ccccccceEecccCCCCCCCCccEEEEEeccC
Q 004680 75 EASLISGFFPLEMENGKPNPDLRLRFMLWFKP 106 (737)
Q Consensus 75 ~g~~~d~w~~L~~~~~k~~~~~~l~l~l~f~~ 106 (737)
.+.....|++|.....+....|+|+|+++|++
T Consensus 96 ~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~ 127 (127)
T cd04022 96 PSEAVVQRYPLEKRGLFSRVRGEIGLKVYITD 127 (127)
T ss_pred CCCccceEeEeeeCCCCCCccEEEEEEEEEcC
Confidence 47788999999754222224689999999864
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates |
| >cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.2e-14 Score=135.02 Aligned_cols=96 Identities=26% Similarity=0.327 Sum_probs=80.8
Q ss_pred ccCCCCcEEEEEECC-EEEeecc---CCCCCeEeEEEEEEcCCCc-eEEEEEEecCC---CcccEEEEeehhhhhccccc
Q 004680 7 FVNGKPTYVTIKIDN-KKVAKTS---HEHDRVWNQTFQILCAHPA-DATITITLKTK---CSVLGKIHIQALQILNEASL 78 (737)
Q Consensus 7 ~~~~~DPYv~v~l~~-~~~~rTk---~~~nP~WnE~F~~~~~~~~-~l~~~V~D~d~---d~~iG~~~ipl~~l~~~g~~ 78 (737)
..+++||||+|.+++ ..+.||+ ++.||+|||+|.|.+.+.. .|.|+|+|++. |++||.+.++|.++. .+..
T Consensus 20 ~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~~~~~~l~~~v~d~~~~~~d~~iG~~~~~l~~l~-~~~~ 98 (124)
T cd04044 20 IGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVNSLTEPLNLTVYDFNDKRKDKLIGTAEFDLSSLL-QNPE 98 (124)
T ss_pred cCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeCCCCCEEEEEEEecCCCCCCceeEEEEEEHHHhc-cCcc
Confidence 346789999999988 5677888 9999999999999998656 99999999986 899999999999999 6666
Q ss_pred cc-ceEecccCCCCCCCCccEEEEEeccC
Q 004680 79 IS-GFFPLEMENGKPNPDLRLRFMLWFKP 106 (737)
Q Consensus 79 ~d-~w~~L~~~~~k~~~~~~l~l~l~f~~ 106 (737)
.+ .|..|. .++|+ .|+|+++|+|.|
T Consensus 99 ~~~~~~~~~-~~~k~--~G~i~~~l~~~p 124 (124)
T cd04044 99 QENLTKNLL-RNGKP--VGELNYDLRFFP 124 (124)
T ss_pred ccCcchhhh-cCCcc--ceEEEEEEEeCC
Confidence 65 445554 56764 589999999987
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.8e-14 Score=133.39 Aligned_cols=90 Identities=18% Similarity=0.345 Sum_probs=78.2
Q ss_pred cCCCCcEEEEEECCEEEeecc---CCCCCeEeEEEEEEcCCC-c-eEEEEEEecCC--CcccEEEEeehhhhhccccccc
Q 004680 8 VNGKPTYVTIKIDNKKVAKTS---HEHDRVWNQTFQILCAHP-A-DATITITLKTK--CSVLGKIHIQALQILNEASLIS 80 (737)
Q Consensus 8 ~~~~DPYv~v~l~~~~~~rTk---~~~nP~WnE~F~~~~~~~-~-~l~~~V~D~d~--d~~iG~~~ipl~~l~~~g~~~d 80 (737)
.|++||||+|.+++ .+.||+ ++.||+|||+|.|.+... . .|.|+|+|+|. +++||.+.|+++++. .+...+
T Consensus 25 ~g~~dPyv~v~~~~-~~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~~~~~~~iG~~~i~l~~l~-~~~~~~ 102 (121)
T cd08391 25 KGKSDPYVIVRVGA-QTFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDEDPDKDDFLGRLSIDLGSVE-KKGFID 102 (121)
T ss_pred CCCcCCEEEEEECC-EeEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEecCCCCCCcEEEEEEEHHHhc-ccCccc
Confidence 47899999999988 456888 999999999999998754 4 99999999987 999999999999999 677789
Q ss_pred ceEecccCCCCCCCCccEEEEEec
Q 004680 81 GFFPLEMENGKPNPDLRLRFMLWF 104 (737)
Q Consensus 81 ~w~~L~~~~~k~~~~~~l~l~l~f 104 (737)
.|++|.+. ..|+|++.++|
T Consensus 103 ~w~~L~~~-----~~G~~~~~~~~ 121 (121)
T cd08391 103 EWLPLEDV-----KSGRLHLKLEW 121 (121)
T ss_pred eEEECcCC-----CCceEEEEEeC
Confidence 99999742 25789999875
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular |
| >KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=5.8e-15 Score=140.73 Aligned_cols=72 Identities=22% Similarity=0.395 Sum_probs=66.0
Q ss_pred cCCCCcEEEEEECCEEEeecc---CCCCCeEeEEEEEEcCCCc-eEEEEEEecCC---CcccEEEEeehhhhhccccccc
Q 004680 8 VNGKPTYVTIKIDNKKVAKTS---HEHDRVWNQTFQILCAHPA-DATITITLKTK---CSVLGKIHIQALQILNEASLIS 80 (737)
Q Consensus 8 ~~~~DPYv~v~l~~~~~~rTk---~~~nP~WnE~F~~~~~~~~-~l~~~V~D~d~---d~~iG~~~ipl~~l~~~g~~~d 80 (737)
.++|||||.+.++++++ ||+ +++||+|||+|.|.+.++. .|.++|+|+|+ ||+||.|+||++.++ .++...
T Consensus 24 ~~sSDPyVVl~lg~q~l-kT~~v~~n~NPeWNe~ltf~v~d~~~~lkv~VyD~D~fs~dD~mG~A~I~l~p~~-~~~~~~ 101 (168)
T KOG1030|consen 24 LGSSDPYVVLELGNQKL-KTRVVYKNLNPEWNEELTFTVKDPNTPLKVTVYDKDTFSSDDFMGEATIPLKPLL-EAQKMD 101 (168)
T ss_pred ccCCCCeEEEEECCeee-eeeeecCCCCCcccceEEEEecCCCceEEEEEEeCCCCCcccccceeeeccHHHH-HHhhhh
Confidence 38999999999999887 888 9999999999999999999 99999999998 999999999999999 665544
Q ss_pred c
Q 004680 81 G 81 (737)
Q Consensus 81 ~ 81 (737)
.
T Consensus 102 ~ 102 (168)
T KOG1030|consen 102 Y 102 (168)
T ss_pred c
Confidence 4
|
|
| >cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.56 E-value=8.9e-15 Score=135.54 Aligned_cols=78 Identities=18% Similarity=0.242 Sum_probs=66.8
Q ss_pred CCCCcEEEEEEC-----C-EEEeecc---CCCCCeEeEEEEEEcCCC---c--eEEEEEEecCC---CcccEEEEeehhh
Q 004680 9 NGKPTYVTIKID-----N-KKVAKTS---HEHDRVWNQTFQILCAHP---A--DATITITLKTK---CSVLGKIHIQALQ 71 (737)
Q Consensus 9 ~~~DPYv~v~l~-----~-~~~~rTk---~~~nP~WnE~F~~~~~~~---~--~l~~~V~D~d~---d~~iG~~~ipl~~ 71 (737)
|++||||+|++- . ++..||+ +++||+|||+|.|.+.+. . .|.|+|+|+|. +++||++.|||.+
T Consensus 18 g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~d~~~~dd~IG~~~l~l~~ 97 (120)
T cd08395 18 GMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDYCFARDDRLVGVTVLQLRD 97 (120)
T ss_pred CCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEecccCCCCEEEEEEEEHHH
Confidence 889999999983 2 3345777 899999999999998643 2 69999999986 8999999999999
Q ss_pred hhcccccccceEeccc
Q 004680 72 ILNEASLISGFFPLEM 87 (737)
Q Consensus 72 l~~~g~~~d~w~~L~~ 87 (737)
+. .++..+.|++|..
T Consensus 98 ~~-~~~~~~~w~~L~~ 112 (120)
T cd08395 98 IA-QAGSCACWLPLGR 112 (120)
T ss_pred Cc-CCCcEEEEEECcC
Confidence 99 8888999999953
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi |
| >cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.7e-14 Score=131.44 Aligned_cols=90 Identities=18% Similarity=0.190 Sum_probs=79.4
Q ss_pred cCCCCcEEEEEECCEEEeecc---CCCCCeEeEEEEEEcCCC-c-eEEEEEEecCC---CcccEEEEeehhhhhcccccc
Q 004680 8 VNGKPTYVTIKIDNKKVAKTS---HEHDRVWNQTFQILCAHP-A-DATITITLKTK---CSVLGKIHIQALQILNEASLI 79 (737)
Q Consensus 8 ~~~~DPYv~v~l~~~~~~rTk---~~~nP~WnE~F~~~~~~~-~-~l~~~V~D~d~---d~~iG~~~ipl~~l~~~g~~~ 79 (737)
.+++||||++.+++.+ .||+ ++.||+|||+|.|.+.+. . .|.|+|+|++. +++||++.++|+++. .++..
T Consensus 18 ~~~~dPyv~v~~~~~~-~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~~~~~iG~~~~~l~~l~-~~~~~ 95 (116)
T cd08376 18 NGLSDPYVKFRLGNEK-YKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGKKDEFIGRCEIDLSALP-REQTH 95 (116)
T ss_pred CCCCCcEEEEEECCEe-EecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCCCCCeEEEEEEeHHHCC-CCCce
Confidence 4789999999998754 5888 999999999999999876 4 99999999986 899999999999999 88899
Q ss_pred cceEecccCCCCCCCCccEEEEEecc
Q 004680 80 SGFFPLEMENGKPNPDLRLRFMLWFK 105 (737)
Q Consensus 80 d~w~~L~~~~~k~~~~~~l~l~l~f~ 105 (737)
+.|++|.+. .|+|++.++|+
T Consensus 96 ~~w~~L~~~------~G~~~~~~~~~ 115 (116)
T cd08376 96 SLELELEDG------EGSLLLLLTLT 115 (116)
T ss_pred EEEEEccCC------CcEEEEEEEec
Confidence 999999742 37899998875
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei |
| >cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2) | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.3e-14 Score=132.70 Aligned_cols=91 Identities=15% Similarity=0.235 Sum_probs=77.6
Q ss_pred cCCCCcEEEEEECC--EEEeecc---CCCCCeEeEEEEEEcCCCc--eEEEEEEecCC--CcccEEEEeehhhhhccccc
Q 004680 8 VNGKPTYVTIKIDN--KKVAKTS---HEHDRVWNQTFQILCAHPA--DATITITLKTK--CSVLGKIHIQALQILNEASL 78 (737)
Q Consensus 8 ~~~~DPYv~v~l~~--~~~~rTk---~~~nP~WnE~F~~~~~~~~--~l~~~V~D~d~--d~~iG~~~ipl~~l~~~g~~ 78 (737)
.+++||||+|.+++ ....||+ ++.||+|||+|.|.+.... .|.|+|+|+|. +++||++.+|++++. .|..
T Consensus 18 ~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~~~~~iG~~~~~l~~l~-~g~~ 96 (119)
T cd04036 18 LSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYVMDDHLGTVLFDVSKLK-LGEK 96 (119)
T ss_pred CCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCCCCcccEEEEEEHHHCC-CCCc
Confidence 47899999999964 3456888 8999999999999987654 79999999997 999999999999999 8999
Q ss_pred ccceEecccCCCCCCCCccEEEEEec
Q 004680 79 ISGFFPLEMENGKPNPDLRLRFMLWF 104 (737)
Q Consensus 79 ~d~w~~L~~~~~k~~~~~~l~l~l~f 104 (737)
.+.|++|.. . +.|+|++.+.+
T Consensus 97 ~~~~~~L~~-~----~~g~l~~~~~~ 117 (119)
T cd04036 97 VRVTFSLNP-Q----GKEELEVEFLL 117 (119)
T ss_pred EEEEEECCC-C----CCceEEEEEEe
Confidence 999999963 3 24678877764
|
A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o |
| >cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Probab=99.52 E-value=7.2e-14 Score=130.09 Aligned_cols=95 Identities=17% Similarity=0.182 Sum_probs=77.9
Q ss_pred ccCCCCcEEEEEECCEEEeecc---CCCCCeEeEEEEEEcCCCc--eEEEEEEecCC---CcccEEEEeehhhhhccccc
Q 004680 7 FVNGKPTYVTIKIDNKKVAKTS---HEHDRVWNQTFQILCAHPA--DATITITLKTK---CSVLGKIHIQALQILNEASL 78 (737)
Q Consensus 7 ~~~~~DPYv~v~l~~~~~~rTk---~~~nP~WnE~F~~~~~~~~--~l~~~V~D~d~---d~~iG~~~ipl~~l~~~g~~ 78 (737)
..+++||||+|.+++.. .||+ ++.||+|||+|.|.+.+.. .|.|+|+|++. +++||.+.++|.++. .+..
T Consensus 17 ~~~~~DPyv~v~~~~~~-~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~~~~~iG~~~~~l~~l~-~~~~ 94 (123)
T cd04025 17 RNGTSDPFVRVFYNGQT-LETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVSKNDFLGKVVFSIQTLQ-QAKQ 94 (123)
T ss_pred CCCCcCceEEEEECCEE-EeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCCCCcEeEEEEEEHHHcc-cCCC
Confidence 35789999999998765 4887 8999999999999998764 89999999986 899999999999998 7777
Q ss_pred ccceEecccCCCCC--C--CCccEEEEEe
Q 004680 79 ISGFFPLEMENGKP--N--PDLRLRFMLW 103 (737)
Q Consensus 79 ~d~w~~L~~~~~k~--~--~~~~l~l~l~ 103 (737)
.+.|++|.....++ . ..|.|+|.++
T Consensus 95 ~~~w~~L~~~~~~~~~~~~~~G~l~~~~~ 123 (123)
T cd04025 95 EEGWFRLLPDPRAEEESGGNLGSLRLKVR 123 (123)
T ss_pred CCCEEECCCCCCCCccccCceEEEEEEeC
Confidence 89999997532221 1 4577877663
|
RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a |
| >cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.52 E-value=7.4e-14 Score=128.98 Aligned_cols=94 Identities=15% Similarity=0.229 Sum_probs=80.5
Q ss_pred ccCCCCcEEEEEECCEEEeecc---CCCCCeEeEEEEEEcCCCc-eEEEEEEecCC---CcccEEEEeehhhhhcccccc
Q 004680 7 FVNGKPTYVTIKIDNKKVAKTS---HEHDRVWNQTFQILCAHPA-DATITITLKTK---CSVLGKIHIQALQILNEASLI 79 (737)
Q Consensus 7 ~~~~~DPYv~v~l~~~~~~rTk---~~~nP~WnE~F~~~~~~~~-~l~~~V~D~d~---d~~iG~~~ipl~~l~~~g~~~ 79 (737)
..+++||||+|.+++.. .||+ ++.||+|||+|.|++.+.. .|.|+|+|++. +++||++.+|+.++. .+.
T Consensus 18 ~~~~~dPyv~v~~~~~~-~~T~~~~~t~nP~W~e~f~~~~~~~~~~l~~~v~d~~~~~~~~~iG~~~~~l~~~~-~~~-- 93 (119)
T cd08377 18 IGGKSDPFCVLELVNAR-LQTHTIYKTLNPEWNKIFTFPIKDIHDVLEVTVYDEDKDKKPEFLGKVAIPLLSIK-NGE-- 93 (119)
T ss_pred CCCCCCcEEEEEECCEe-eecceecCCcCCccCcEEEEEecCcCCEEEEEEEECCCCCCCceeeEEEEEHHHCC-CCC--
Confidence 35789999999998865 4888 8999999999999998866 99999999986 899999999999988 554
Q ss_pred cceEecccCCCCCCCCccEEEEEec
Q 004680 80 SGFFPLEMENGKPNPDLRLRFMLWF 104 (737)
Q Consensus 80 d~w~~L~~~~~k~~~~~~l~l~l~f 104 (737)
+.|++|.++.++....|+|+|.++|
T Consensus 94 ~~~~~l~~~~~~~~~~G~i~l~~~~ 118 (119)
T cd08377 94 RKWYALKDKKLRTRAKGSILLEMDV 118 (119)
T ss_pred ceEEECcccCCCCceeeEEEEEEEe
Confidence 5899998665444457899999987
|
MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran |
| >cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.52 E-value=5.2e-14 Score=127.44 Aligned_cols=80 Identities=20% Similarity=0.433 Sum_probs=70.1
Q ss_pred ccCCCCcEEEEEECCEEEeecc---CCCCCeEeEEEEEEcCCCc--eEEEEEEecCCCcccEEEEeehhhhhcc-ccccc
Q 004680 7 FVNGKPTYVTIKIDNKKVAKTS---HEHDRVWNQTFQILCAHPA--DATITITLKTKCSVLGKIHIQALQILNE-ASLIS 80 (737)
Q Consensus 7 ~~~~~DPYv~v~l~~~~~~rTk---~~~nP~WnE~F~~~~~~~~--~l~~~V~D~d~d~~iG~~~ipl~~l~~~-g~~~d 80 (737)
..+++||||+|.++++ ..||+ ++.||+|||+|.|.+.++. .|.|+|+|.+.+++||++.|+|.++... +...+
T Consensus 17 ~~~~~dpyv~v~~~~~-~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~~~~iG~~~i~l~~l~~~~~~~~~ 95 (105)
T cd04050 17 STKEPSPYVELTVGKT-TQKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDKTGKSLGSLTLPLSELLKEPDLTLD 95 (105)
T ss_pred cCCCCCcEEEEEECCE-EEeCccccCCCCCcccceEEEEeCCCCCCEEEEEEEECCCCCccEEEEEEHHHhhccccceee
Confidence 4578999999999985 45888 8999999999999998864 8999999988899999999999999842 35789
Q ss_pred ceEeccc
Q 004680 81 GFFPLEM 87 (737)
Q Consensus 81 ~w~~L~~ 87 (737)
.||+|.+
T Consensus 96 ~w~~L~~ 102 (105)
T cd04050 96 QPFPLDN 102 (105)
T ss_pred eeEecCC
Confidence 9999974
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm |
| >cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1) | Back alignment and domain information |
|---|
Probab=99.52 E-value=6.2e-14 Score=135.26 Aligned_cols=98 Identities=15% Similarity=0.176 Sum_probs=81.8
Q ss_pred cccCCCCcEEEEEE----CCEEEeecc---CCCCCeEeEEEEEEcCCC---------c-eEEEEEEecCC----CcccEE
Q 004680 6 VFVNGKPTYVTIKI----DNKKVAKTS---HEHDRVWNQTFQILCAHP---------A-DATITITLKTK----CSVLGK 64 (737)
Q Consensus 6 ~~~~~~DPYv~v~l----~~~~~~rTk---~~~nP~WnE~F~~~~~~~---------~-~l~~~V~D~d~----d~~iG~ 64 (737)
...+.+||||++.+ .+....||+ +|+||+|||+|.|.+... . .|.|+|+|++. |++||+
T Consensus 20 ~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~V~d~~~f~~~D~~iG~ 99 (155)
T cd08690 20 WNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFEVYHKGGFLRSDKLLGT 99 (155)
T ss_pred cCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEEEEeCCCcccCCCeeEE
Confidence 34578999999998 455567888 999999999999998654 2 79999999984 999999
Q ss_pred EEeehhhhhcccccccceEecccCCCCCCCCccEEEEEeccC
Q 004680 65 IHIQALQILNEASLISGFFPLEMENGKPNPDLRLRFMLWFKP 106 (737)
Q Consensus 65 ~~ipl~~l~~~g~~~d~w~~L~~~~~k~~~~~~l~l~l~f~~ 106 (737)
+.|+|+.+. ....++.|++|++ +.|+. +|+|++.++.+.
T Consensus 100 ~~i~L~~l~-~~~~~~~~~~L~~-~~k~~-Gg~l~v~ir~r~ 138 (155)
T cd08690 100 AQVKLEPLE-TKCEIHESVDLMD-GRKAT-GGKLEVKVRLRE 138 (155)
T ss_pred EEEEccccc-ccCcceEEEEhhh-CCCCc-CCEEEEEEEecC
Confidence 999999998 6667888999984 44554 679999999765
|
Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha |
| >cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Probab=99.51 E-value=9.5e-14 Score=127.77 Aligned_cols=94 Identities=15% Similarity=0.185 Sum_probs=76.9
Q ss_pred CCCCcEEEEEECCEEEeecc---CCCCCeEeEEEEEEcCCC---c-eEEEEEEecCC-CcccEEEEeehhhhhccccccc
Q 004680 9 NGKPTYVTIKIDNKKVAKTS---HEHDRVWNQTFQILCAHP---A-DATITITLKTK-CSVLGKIHIQALQILNEASLIS 80 (737)
Q Consensus 9 ~~~DPYv~v~l~~~~~~rTk---~~~nP~WnE~F~~~~~~~---~-~l~~~V~D~d~-d~~iG~~~ipl~~l~~~g~~~d 80 (737)
|++||||.|.+++.+++||+ + .||+|||+|.|.+.+. . .|.|.|+|.+. +..+|..++++..+. .+...+
T Consensus 16 ~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~~~~~g~v~l~~~~-~~~~~~ 93 (117)
T cd08383 16 GTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRDIVIGKVALSKLD-LGQGKD 93 (117)
T ss_pred CCCCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCCCeeEEEEEEecCcC-CCCcce
Confidence 78999999999998778998 7 9999999999999873 3 78888888876 455566667777777 688899
Q ss_pred ceEecccCCCCCCCCccEEEEEec
Q 004680 81 GFFPLEMENGKPNPDLRLRFMLWF 104 (737)
Q Consensus 81 ~w~~L~~~~~k~~~~~~l~l~l~f 104 (737)
.|++|...+++....|+|+|.++|
T Consensus 94 ~w~~L~~~~~~~~~~G~l~l~~~~ 117 (117)
T cd08383 94 EWFPLTPVDPDSEVQGSVRLRARY 117 (117)
T ss_pred eEEECccCCCCCCcCceEEEEEEC
Confidence 999998655544456899999987
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 |
| >cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42) | Back alignment and domain information |
|---|
Probab=99.51 E-value=7.6e-14 Score=131.63 Aligned_cols=97 Identities=13% Similarity=0.217 Sum_probs=79.3
Q ss_pred cCCCCcEEEEEECCE------EEeecc---CCCCCeEeEEEEEEcCCCc-eEEEEEEecCC---CcccEEEEeehhhhhc
Q 004680 8 VNGKPTYVTIKIDNK------KVAKTS---HEHDRVWNQTFQILCAHPA-DATITITLKTK---CSVLGKIHIQALQILN 74 (737)
Q Consensus 8 ~~~~DPYv~v~l~~~------~~~rTk---~~~nP~WnE~F~~~~~~~~-~l~~~V~D~d~---d~~iG~~~ipl~~l~~ 74 (737)
.+++||||+|.+.+. ...||+ ++.||+|||+|.|.+.... .|.|+|+|+|. +++||++.|+++++.
T Consensus 18 ~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~- 96 (133)
T cd04033 18 FGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPREHRLLFEVFDENRLTRDDFLGQVEVPLNNLP- 96 (133)
T ss_pred CCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCCCCEEEEEEEECCCCCCCCeeEEEEEEHHHCC-
Confidence 578999999999764 134777 9999999999999987656 99999999986 899999999999998
Q ss_pred ccc------cccceEecccCCCCCCCCccEEEEEecc
Q 004680 75 EAS------LISGFFPLEMENGKPNPDLRLRFMLWFK 105 (737)
Q Consensus 75 ~g~------~~d~w~~L~~~~~k~~~~~~l~l~l~f~ 105 (737)
.+. ..+.|++|....++....|+|+++++|.
T Consensus 97 ~~~~~~~~~~~~~~~~l~~~~~~~~~~G~l~~~~~~~ 133 (133)
T cd04033 97 TETPGNERRYTFKDYLLRPRSSKSRVKGHLRLYMAYL 133 (133)
T ss_pred CcCccccccccchheeeeecCCCCcceeEEEEEEeeC
Confidence 443 3579999985433322578999999984
|
Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >KOG3603 consensus Predicted phospholipase D [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.1e-11 Score=129.67 Aligned_cols=377 Identities=18% Similarity=0.191 Sum_probs=214.3
Q ss_pred cccCceeEEeeccCCCCCCCCCCcCCCCchhHHHHHHHHHHccccEEEEEEeecC---CceEEeeCCchhhccchHHHHH
Q 004680 132 QRSNCHVKLYHDAHHSSSFEPPYDLCGSPGKLWEDVYKAIEGAKHLIYIAGWSLN---PKMVLVRDSQTEIAHARGVQLG 208 (737)
Q Consensus 132 ~~~gn~v~ly~dg~~~~~f~p~~~~~~~~~~~~~~l~~aI~~Ak~~I~I~~w~~~---~~~~L~r~~~~~~~~~~~~~l~ 208 (737)
...-|++.|+.+-..--.|.-.- ......++.++.|++|+++++|..|-.+ .++++. +.. ...|..+.
T Consensus 46 c~~~C~~~vvESIP~gl~f~~~t----~~~sT~eaW~~Ll~sA~~eldIas~ywsL~~~d~~~~-dsS----t~~G~~vy 116 (456)
T KOG3603|consen 46 CGDTCKLVLVESIPAGLTFPDAS----PFLSTKEAWLELLSTAQEELDIASFYWSLTGKDTGVV-DSS----TQYGEQVY 116 (456)
T ss_pred hcCceeEEEEecccccCcCcccC----CCccHHHHHHHHhhccceEEEEEEEeeccccceeccC-CCc----chHHHHHH
Confidence 44557777776542111221100 0124569999999999999999864332 222221 111 11488999
Q ss_pred HHHHHHHHcCCeEEEEEeCCCCCccccccccccccccHHHHHHHhcCC-cEEEEcCCCCCCCCccccCccceEEecCCCc
Q 004680 209 ELLKHKAEEGVAVRIMLWDDETSLPIIKNKGVMRTHDEDAFAYFKHTK-VICKLCPRLHHKFPTLFAHHQKTITVDARAQ 287 (737)
Q Consensus 209 ~lL~~kA~rGV~VriLvwD~~~s~~~~~~~g~~~~~~~~~~~~l~~~g-v~v~~~~r~~~~~~~~~~hHqK~vVVD~~~~ 287 (737)
..|.+++.+||.||+.. +...... .+ .-...|...| ++++-.+.+ .....+-.|-|+.|||++
T Consensus 117 ~~L~~~~~~gIsiriA~-~~p~~~~-~~----------~d~~~Le~~Gaa~vr~id~~--~l~g~GvlHtKf~vvD~k-- 180 (456)
T KOG3603|consen 117 NTLLALAKSGVKIRIAQ-SYPSGGP-PN----------ADLQVLESLGLAQVRSIDMN--RLTGGGVLHTKFWVVDIK-- 180 (456)
T ss_pred HHHHHhccCCeEEEEEe-ecCCCCC-Cc----------ccHHHHHhCCCceEEeeccc--ccccCceEEEEEEEEecc--
Confidence 99999999999999986 4322211 11 1234566666 666543211 112246789999999999
Q ss_pred CcccccceEEEEccccCCCCCcCCCCCcccccCCCCcccCccccccccCcccCCCCCCCCceeccceeeC--HHHHHHHH
Q 004680 288 DSIFDREIMSFVGGLDLCDGRYDTEKHSLFQTLNSESHCFDFYQINIAGASLHKGGPREPWHDVHACITG--EAAWDVLT 365 (737)
Q Consensus 288 ~~~~~~~~vAfvGG~nL~~~r~Dt~~H~l~~~l~~~~~~~d~~~~~~~g~~~~~~~~~~pWhDv~~~v~G--pav~dl~~ 365 (737)
--|+||.|+.+.-. | --..+++.+.- -.+.||..
T Consensus 181 --------hfylGSaNfDWrSl-T-----------------------------------qvkElGv~v~NCpclakDL~k 216 (456)
T KOG3603|consen 181 --------HFYLGSANFDWRSL-T-----------------------------------QVKELGVVVRNCPCLAKDLKK 216 (456)
T ss_pred --------eEEEeccccchhhc-c-----------------------------------ceeEeeeEEecChhHHHHHHH
Confidence 89999999987411 1 01234444443 37999999
Q ss_pred HHHHHhhhccCCCCCcCCCCCCCCCCCCC-CCCCCCCCCCCCeeeEEEeecCccchhhhccCccchhHHHHHHHHHHHhc
Q 004680 366 NFEQRWTKQCDPSLLVPISSIPNLGHKSN-IIPSSNYFNQRNWKVQVFRSIDHVSASQLAKNLTVERSIHEAYVEAIRKA 444 (737)
Q Consensus 366 ~F~~rW~~~~~~~~~~~~~~~~~~~~p~~-~~~~~~~~~~~~~~vqv~rs~~~~~~~~~p~~~~~~~sI~~ayl~aI~~A 444 (737)
.|++.|..-..+.+. |......+..+.. ..|.....+......++..| |..-.|. +..-=.+|+++.|..|
T Consensus 217 iFe~yW~lg~~~s~~-p~~wp~~~st~~N~~~p~~~~~dg~~~~~y~saS----P~~~~~~---grt~DL~ail~~i~~A 288 (456)
T KOG3603|consen 217 IFERYWYLGNAKSLI-PKKWPNCYSTHYNKPLPMKIAVDGTPATPYISAS----PPPLNPS---GRTWDLEAILNTIDEA 288 (456)
T ss_pred HHHHHhcCCCCCccC-CCCCcccccccccccCcceeecCCCCcceEEccC----CCCCCCC---CCchhHHHHHHHHHHH
Confidence 999999975443221 1110000000000 00110001122223444443 2111222 3345588999999999
Q ss_pred cceEEEee-ccccCCcccccccccCCCCCccHHHHHHHHHHHHHcCCCcEEEEEecCCCCCCCCCCcchhhhhhHHHhHH
Q 004680 445 ERFIYIEN-QYFIGGCQLWEKDKHCGCRNLIPIEIALKVVSKIKAKERFAVYILIPMWPEGVPTSDPVQDILHWTRETMA 523 (737)
Q Consensus 445 ~~~IyIEn-qYFi~~~~~w~~~~~~~~~n~i~~~la~~ia~~~~~g~~v~V~IvlP~~p~g~~~~~~~~~i~~~~~~t~~ 523 (737)
++||||.- +||-+..+. . . .+-. +|-.+|.+|+-|| |+|++++..|+...+ +|.
T Consensus 289 ~~fv~isVMdY~Ps~~y~-k---~---~~fw--~iDdaiR~aa~Rg--V~vR~lvs~~~~~~~--------------~m~ 343 (456)
T KOG3603|consen 289 QKFVYISVMDYFPSTIYS-K---N---HRFW--EIDDAIRRAAVRG--VKVRLLVSCWKHSEP--------------SMF 343 (456)
T ss_pred hhheeeeehhccchheee-c---C---cchh--hhhHHHHHHhhcc--eEEEEEEeccCCCCc--------------hHH
Confidence 99999976 676544332 1 1 1112 5666777776677 999999998875332 111
Q ss_pred HHHHHHHHHHHh-------cCCCCCCcCceEEeeccchhhhccCCcccCCCCCCCCchhHHhhhccccceeeeeeEEEEe
Q 004680 524 MMYKLIGEAIQE-------SGQVGHPRDFLNFFCLATREEKKSNGEFVPPYSPHPMTQYWNAQMHRRFMVYVHSKLMIVD 596 (737)
Q Consensus 524 ~~~~~~~~~L~~-------~gv~~~p~~yl~~~~l~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~iyvHSK~mIVD 596 (737)
.++..|+. ..++ ++||-. |...- .+- .+....|+|.||-+
T Consensus 344 ----~~L~SLq~l~~~~~~~~iq------vk~f~V-------------P~~~~-~~i---------p~~Rv~HnKymVTe 390 (456)
T KOG3603|consen 344 ----RFLRSLQDLSDPLENGSIQ------VKFFIV-------------PQTNI-EKI---------PFARVNHNKYMVTE 390 (456)
T ss_pred ----HHHHHHHHhcCccccCceE------EEEEEe-------------CCCcc-ccC---------chhhhccceeEEee
Confidence 13333332 1122 233321 21000 000 01246899999887
Q ss_pred ceEEEEeccCCCccccCCCCCcceEEEEecCCCCCcchhhHHHHHHHHHHH
Q 004680 597 DVYLLIGSANINQRSMDGQRDTEIAIGCYQLPKNDDQNSEDISAYRLSLWY 647 (737)
Q Consensus 597 D~~~~IGSaNin~RS~~~~~DsEi~v~i~d~~~~~~~~~~~~~~lR~~Lw~ 647 (737)
+ .++||++|+..--+..+ +-+++++.++... +..+.+++....+=|.
T Consensus 391 ~-aayIGTSNws~dYf~~T--aG~~ivv~q~~~~-~~~~~ql~~vFeRdW~ 437 (456)
T KOG3603|consen 391 S-AAYIGTSNWSGDYFTST--AGTAIVVRQTPHK-GTLVSQLKAVFERDWN 437 (456)
T ss_pred c-ceeeeccCCCccceecc--CceEEEEecCCCC-CcHHHHHHHHHhhccc
Confidence 7 89999999977666555 6788888876532 1155667777777774
|
|
| >cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3) | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.1e-13 Score=132.94 Aligned_cols=84 Identities=10% Similarity=0.145 Sum_probs=69.2
Q ss_pred ccCCCCcEEEEEECCE----EEeecc---CCCCCeEeEEEEEEcC---------------CCc--eEEEEEEecCC---C
Q 004680 7 FVNGKPTYVTIKIDNK----KVAKTS---HEHDRVWNQTFQILCA---------------HPA--DATITITLKTK---C 59 (737)
Q Consensus 7 ~~~~~DPYv~v~l~~~----~~~rTk---~~~nP~WnE~F~~~~~---------------~~~--~l~~~V~D~d~---d 59 (737)
.+|++||||+|.+.+. ...||+ ++.||+|||+|.|.+. +.. .|.|+|+|++. |
T Consensus 15 ~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~~~L~i~V~d~~~~~~d 94 (148)
T cd04010 15 KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEKLELRVDLWHASMGGGD 94 (148)
T ss_pred CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccEEEEEEEEEcCCCCCCC
Confidence 3588999999999651 234777 8999999999999984 222 79999999986 9
Q ss_pred cccEEEEeehhhhhccc-ccccceEecccCCCC
Q 004680 60 SVLGKIHIQALQILNEA-SLISGFFPLEMENGK 91 (737)
Q Consensus 60 ~~iG~~~ipl~~l~~~g-~~~d~w~~L~~~~~k 91 (737)
++||++.|||..+. .+ ...+.||+|....++
T Consensus 95 dfLG~v~i~l~~l~-~~~~~~~~W~~L~~~~~~ 126 (148)
T cd04010 95 VFLGEVRIPLRGLD-LQAGSHQAWYFLQPREEK 126 (148)
T ss_pred ceeEEEEEeccccc-ccCCcCcceeecCCcccc
Confidence 99999999999999 55 678999999765544
|
RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain |
| >cd08677 C2A_Synaptotagmin-13 C2 domain | Back alignment and domain information |
|---|
Probab=99.47 E-value=5.9e-14 Score=128.82 Aligned_cols=78 Identities=15% Similarity=0.218 Sum_probs=65.4
Q ss_pred ccCCCCcEEEEEECC---EEEeecc---CCCCCeEeEEEEEEcCCCc----eEEEEEEecCC---CcccEEEEeehhhhh
Q 004680 7 FVNGKPTYVTIKIDN---KKVAKTS---HEHDRVWNQTFQILCAHPA----DATITITLKTK---CSVLGKIHIQALQIL 73 (737)
Q Consensus 7 ~~~~~DPYv~v~l~~---~~~~rTk---~~~nP~WnE~F~~~~~~~~----~l~~~V~D~d~---d~~iG~~~ipl~~l~ 73 (737)
..|++||||+|.|.. ++..||+ +|+||+|||+|.|.+.... .|.|+|+|+|+ +++||++.+|+.++.
T Consensus 28 ~~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~V~d~Drfs~~d~IG~v~l~l~~~~ 107 (118)
T cd08677 28 VDAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLTLRCCDRFSRHSTLGELRLKLADVS 107 (118)
T ss_pred CCCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEEEEeCCCCCCCceEEEEEEcccccc
Confidence 457899999999942 2345787 9999999999999997653 89999999998 999999999999986
Q ss_pred cccccccceEec
Q 004680 74 NEASLISGFFPL 85 (737)
Q Consensus 74 ~~g~~~d~w~~L 85 (737)
.+...+.|-+|
T Consensus 108 -~~~~~~~W~~~ 118 (118)
T cd08677 108 -MMLGAAQWVDL 118 (118)
T ss_pred -CCccccchhcC
Confidence 56667788654
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain |
| >cd00138 PLDc Phospholipase D | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.7e-13 Score=133.81 Aligned_cols=146 Identities=25% Similarity=0.310 Sum_probs=103.8
Q ss_pred chhHHHHHHHHHHHhccceEEEeeccccCCcccccccccCCCCCccHHHHHHHHHHHHHcCCCcEEEEEecCCCCCCCCC
Q 004680 429 VERSIHEAYVEAIRKAERFIYIENQYFIGGCQLWEKDKHCGCRNLIPIEIALKVVSKIKAKERFAVYILIPMWPEGVPTS 508 (737)
Q Consensus 429 ~~~sI~~ayl~aI~~A~~~IyIEnqYFi~~~~~w~~~~~~~~~n~i~~~la~~ia~~~~~g~~v~V~IvlP~~p~g~~~~ 508 (737)
...++.+.++++|++|++.|+|+++||.+.. .....++..+|.++.++| ++|+|++...+....
T Consensus 18 ~~~~~~~~i~~~I~~A~~~I~i~~~~~~~~~------------~~~~~~l~~~L~~a~~rG--v~V~il~~~~~~~~~-- 81 (176)
T cd00138 18 GGRSDLDALLEAISNAKKSIYIASFYLSPLI------------TEYGPVILDALLAAARRG--VKVRILVDEWSNTDL-- 81 (176)
T ss_pred CcchHHHHHHHHHHhhheEEEEEEeEecccc------------cccchHHHHHHHHHHHCC--CEEEEEEcccccCCc--
Confidence 3578999999999999999999999998631 001247889999998887 999999997653210
Q ss_pred CcchhhhhhHHHhHHHHHHHHHHHHHhc---CCCCCCcCceEEeeccchhhhccCCcccCCCCCCCCchhHHhhhccccc
Q 004680 509 DPVQDILHWTRETMAMMYKLIGEAIQES---GQVGHPRDFLNFFCLATREEKKSNGEFVPPYSPHPMTQYWNAQMHRRFM 585 (737)
Q Consensus 509 ~~~~~i~~~~~~t~~~~~~~~~~~L~~~---gv~~~p~~yl~~~~l~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~ 585 (737)
. ....+...|.++ |+++ +. +.+. .. ..
T Consensus 82 ----~-----------~~~~~~~~l~~~~~~~i~~--------~~------------~~~~-~~--------------~~ 111 (176)
T cd00138 82 ----K-----------ISSAYLDSLRALLDIGVRV--------FL------------IRTD-KT--------------YG 111 (176)
T ss_pred ----h-----------HHHHHHHHHHHhhcCceEE--------EE------------EcCC-cc--------------cc
Confidence 0 001234555554 4432 11 1110 00 12
Q ss_pred eeeeeeEEEEeceEEEEeccCCCccccCCCCCcceEEEEecCC-CCCcchhhHHHHHHHHHHH
Q 004680 586 VYVHSKLMIVDDVYLLIGSANINQRSMDGQRDTEIAIGCYQLP-KNDDQNSEDISAYRLSLWY 647 (737)
Q Consensus 586 iyvHSK~mIVDD~~~~IGSaNin~RS~~~~~DsEi~v~i~d~~-~~~~~~~~~~~~lR~~Lw~ 647 (737)
..+|+|+||||++.+++||+|++.+|+. .+.|+++.+.+|+ . .+.+...-.++|.
T Consensus 112 ~~~H~K~~iiD~~~~~vGS~N~~~~~~~--~~~e~~~~~~~~~~~-----~~~~~~~f~~~w~ 167 (176)
T cd00138 112 GVLHTKLVIVDDETAYIGSANLDGRSLT--LNSEVGVVIYDPASL-----AADLKASLERDWN 167 (176)
T ss_pred cceeeeEEEEcCCEEEEECCcCChhhhh--hhcceEEEEeChHHH-----HHHHHHHHHHHHh
Confidence 5899999999999999999999999996 4599999998876 3 2455566677886
|
Active site motifs; The PLD superfamily includes enzymes involved in signal transduction, lipid biosynthesis, endonucleases and open reading frames in pathogenic viruses and bacteria. PLD hydrolyzes the terminal phosphodiester bond of phospholipids to phosphatidic acid and a hydrophilic constituent. Phosphatidic acid is a compound that is heavily involved in signal transduction. The common features of the family members are that they can bind to a phosphodiester moiety, and that most of these enzymes are active as bi-lobed monomers or dimers. |
| >PHA03003 palmytilated EEV membrane glycoprotein; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.2e-13 Score=148.05 Aligned_cols=143 Identities=19% Similarity=0.227 Sum_probs=101.2
Q ss_pred hHHHHHHHHHHccccEEEEEEeecCCceEEeeCCchhhccchHHHHHHHHHHHH-HcCCeEEEEEeCCCCCccccccccc
Q 004680 162 KLWEDVYKAIEGAKHLIYIAGWSLNPKMVLVRDSQTEIAHARGVQLGELLKHKA-EEGVAVRIMLWDDETSLPIIKNKGV 240 (737)
Q Consensus 162 ~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~L~r~~~~~~~~~~~~~l~~lL~~kA-~rGV~VriLvwD~~~s~~~~~~~g~ 240 (737)
...+.++++|.+||++|+|+++.|.|.. +++.. ...+..|.++|.+|| +|||+||||+ +..+.....
T Consensus 216 ~~~~~ll~~I~~Ak~~I~I~t~yf~P~~---~~d~~---~~~~~~i~~AL~~AAa~RGV~VRILv-~~~~~~~~~----- 283 (369)
T PHA03003 216 LDADVVLHKIKSAKKSIDLELLSLVPVI---REDDK---TTYWPDIYNALIRAAINRGVKVRLLV-GSWKKNDVY----- 283 (369)
T ss_pred cCHHHHHHHHHHHhhEEEEEEeccccEE---eeCCC---CccHHHHHHHHHHHHHcCCCEEEEEE-ecCCcCCch-----
Confidence 3568999999999999999998775532 22221 113678999999885 8999999998 875432111
Q ss_pred cccccHHHHHHHhcCCcE----EEEcCCCCCCCCccccCccceEEecCCCcCcccccceEEEEccccCCCCCcCCCCCcc
Q 004680 241 MRTHDEDAFAYFKHTKVI----CKLCPRLHHKFPTLFAHHQKTITVDARAQDSIFDREIMSFVGGLDLCDGRYDTEKHSL 316 (737)
Q Consensus 241 ~~~~~~~~~~~l~~~gv~----v~~~~r~~~~~~~~~~hHqK~vVVD~~~~~~~~~~~~vAfvGG~nL~~~r~Dt~~H~l 316 (737)
.....+.|...|++ +..+. ..+|+|++|||++ +||+||.|+...++..
T Consensus 284 ----~~~~~~~L~~~G~~~~i~vri~~---------~~~H~K~~VVD~~----------~a~iGS~N~d~~s~~~----- 335 (369)
T PHA03003 284 ----SMASVKSLQALCVGNDLSVKVFR---------IPNNTKLLIVDDE----------FAHITSANFDGTHYLH----- 335 (369)
T ss_pred ----hhhHHHHHHHcCCCCCceEeeec---------CCCCceEEEEcCC----------EEEEeccccCchhhcc-----
Confidence 11345667777843 32211 2289999999999 9999999998754421
Q ss_pred cccCCCCcccCccccccccCcccCCCCCCCCceeccceeeCHHHHHHHHHHHHHhhhc
Q 004680 317 FQTLNSESHCFDFYQINIAGASLHKGGPREPWHDVHACITGEAAWDVLTNFEQRWTKQ 374 (737)
Q Consensus 317 ~~~l~~~~~~~d~~~~~~~g~~~~~~~~~~pWhDv~~~v~Gpav~dl~~~F~~rW~~~ 374 (737)
..|.++ ..++|++|.+++..|.++|+..
T Consensus 336 -----------------------------~~e~~~-~~~~~~~a~~l~~~F~~dW~~~ 363 (369)
T PHA03003 336 -----------------------------HAFVSF-NTIDKELVKELSAIFERDWTSS 363 (369)
T ss_pred -----------------------------CCCeEE-ecCChhHHHHHHHHHHHHhCCc
Confidence 122232 2467999999999999999854
|
|
| >PRK13912 nuclease NucT; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.4e-13 Score=134.88 Aligned_cols=142 Identities=17% Similarity=0.138 Sum_probs=95.2
Q ss_pred hhHHHHHHHHHHHhccceEEEeeccccCCcccccccccCCCCCccHHHHHHHHHHHHHcCCCcEEEEEecCCCCCCCCCC
Q 004680 430 ERSIHEAYVEAIRKAERFIYIENQYFIGGCQLWEKDKHCGCRNLIPIEIALKVVSKIKAKERFAVYILIPMWPEGVPTSD 509 (737)
Q Consensus 430 ~~sI~~ayl~aI~~A~~~IyIEnqYFi~~~~~w~~~~~~~~~n~i~~~la~~ia~~~~~g~~v~V~IvlP~~p~g~~~~~ 509 (737)
..++...++++|++|+++|+|+. |+++. .++..+|.+|.+|| |+|+|+++...+..
T Consensus 31 ~~~~~~~l~~~I~~Ak~sI~i~~-Y~~~~-----------------~~i~~aL~~Aa~RG--V~VrIlld~~~~~~---- 86 (177)
T PRK13912 31 QKDALNKLVSLISNARSSIKIAI-YSFTH-----------------KDIAKALKSAAKRG--VKISIIYDYESNHN---- 86 (177)
T ss_pred hHHHHHHHHHHHHhcccEEEEEE-EEEch-----------------HHHHHHHHHHHHCC--CEEEEEEeCccccC----
Confidence 35778999999999999999996 55543 36888999998888 99999999754211
Q ss_pred cchhhhhhHHHhHHHHHHHHHHHHHh-cCCCCCCcCceEEeeccchhhhccCCcccCCCCCCCCchhHHhhhccccceee
Q 004680 510 PVQDILHWTRETMAMMYKLIGEAIQE-SGQVGHPRDFLNFFCLATREEKKSNGEFVPPYSPHPMTQYWNAQMHRRFMVYV 588 (737)
Q Consensus 510 ~~~~i~~~~~~t~~~~~~~~~~~L~~-~gv~~~p~~yl~~~~l~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~iyv 588 (737)
... .+ ...|.+ .++++ +. +.+... ... ....++
T Consensus 87 ~~~-------~~--------~~~l~~~~~~~~--------~~------------~~~~~~-~~~----------~~~~~~ 120 (177)
T PRK13912 87 NDQ-------ST--------IGYLDKYPNIKV--------CL------------LKGLKA-KNG----------KYYGIM 120 (177)
T ss_pred cch-------hH--------HHHHHhCCCceE--------EE------------ecCccc-cCc----------cccccc
Confidence 000 01 011211 12221 10 000000 000 001468
Q ss_pred eeeEEEEeceEEEEeccCCCccccCCCCCcceEEEEecCCCCCcchhhHHHHHHHHHHHH
Q 004680 589 HSKLMIVDDVYLLIGSANINQRSMDGQRDTEIAIGCYQLPKNDDQNSEDISAYRLSLWYE 648 (737)
Q Consensus 589 HSK~mIVDD~~~~IGSaNin~RS~~~~~DsEi~v~i~d~~~~~~~~~~~~~~lR~~Lw~e 648 (737)
|+|+||||++++++||+|++.+|+..| .|+++.+.+|+. ..++.+.-.++|+.
T Consensus 121 H~K~~viD~~~~~iGS~N~t~~s~~~N--~E~~lii~d~~~-----~~~~~~~F~~~~~~ 173 (177)
T PRK13912 121 HQKVAIIDDKIVVLGSANWSKNAFENN--YEVLLITDDTET-----ILKAKEYFQKMLGS 173 (177)
T ss_pred ceeEEEEcCCEEEEeCCCCChhHhccC--CceEEEECCHHH-----HHHHHHHHHHHHHh
Confidence 999999999999999999999999655 999999988774 35566677777764
|
|
| >cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.3e-13 Score=124.29 Aligned_cols=79 Identities=23% Similarity=0.373 Sum_probs=69.4
Q ss_pred cCCCCcEEEEEECCEEEeecc---CCCCCeE-eEEEEEEcCCC---c-eEEEEEEecCC---CcccEEEEeehhhhhcc-
Q 004680 8 VNGKPTYVTIKIDNKKVAKTS---HEHDRVW-NQTFQILCAHP---A-DATITITLKTK---CSVLGKIHIQALQILNE- 75 (737)
Q Consensus 8 ~~~~DPYv~v~l~~~~~~rTk---~~~nP~W-nE~F~~~~~~~---~-~l~~~V~D~d~---d~~iG~~~ipl~~l~~~- 75 (737)
.|++||||+|.+++ ...||+ ++.||+| ||+|.|.+.+. . .|.|+|+|+|. +++||++.++|+++...
T Consensus 18 ~~~~Dpyv~v~~~~-~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~~~~~iG~~~~~l~~l~~~~ 96 (110)
T cd08688 18 SDLTDAFVEVKFGS-TTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYSANDAIGKVYIDLNPLLLKD 96 (110)
T ss_pred CCCCCceEEEEECC-eeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCCCCCceEEEEEeHHHhcccC
Confidence 57899999999988 456898 8999999 99999999774 3 89999999997 89999999999999932
Q ss_pred -cccccceEeccc
Q 004680 76 -ASLISGFFPLEM 87 (737)
Q Consensus 76 -g~~~d~w~~L~~ 87 (737)
+..++.||+|++
T Consensus 97 ~~~~~~~w~~l~~ 109 (110)
T cd08688 97 SVSQISGWFPIYD 109 (110)
T ss_pred CccccCCeEEccc
Confidence 567999999986
|
The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a |
| >cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.45 E-value=4.5e-13 Score=125.29 Aligned_cols=96 Identities=10% Similarity=0.154 Sum_probs=78.1
Q ss_pred cCCCCcEEEEEECCEEEeecc---CCCCCeEeEEEEEEcCCC-c-eEEEEEEecCC---CcccEEEEeehhhhhc--ccc
Q 004680 8 VNGKPTYVTIKIDNKKVAKTS---HEHDRVWNQTFQILCAHP-A-DATITITLKTK---CSVLGKIHIQALQILN--EAS 77 (737)
Q Consensus 8 ~~~~DPYv~v~l~~~~~~rTk---~~~nP~WnE~F~~~~~~~-~-~l~~~V~D~d~---d~~iG~~~ipl~~l~~--~g~ 77 (737)
.+++||||.|.+++++ .||+ ++.||+|||+|.|++.+. . .|.|+|+|++. +++||+++|+++++.. ...
T Consensus 21 ~~~~dPyv~v~~~~~~-~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~i~l~~~~~~~~~~ 99 (128)
T cd04024 21 KGKSDPYAILSVGAQR-FKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFAGKDYLGEFDIALEEVFADGKTG 99 (128)
T ss_pred CCCcCCeEEEEECCEE-EecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCCCCCCcceEEEEEHHHhhcccccC
Confidence 5789999999998765 5888 999999999999999874 4 99999999986 8999999999999973 124
Q ss_pred cccceEecccCCCC--CCCCccEEEEEec
Q 004680 78 LISGFFPLEMENGK--PNPDLRLRFMLWF 104 (737)
Q Consensus 78 ~~d~w~~L~~~~~k--~~~~~~l~l~l~f 104 (737)
..+.|++|.+.... ....|+|+|++++
T Consensus 100 ~~~~w~~L~~~~~~~~~~~~G~i~l~~~~ 128 (128)
T cd04024 100 QSDKWITLKSTRPGKTSVVSGEIHLQFSW 128 (128)
T ss_pred ccceeEEccCcccCccccccceEEEEEEC
Confidence 46899999754221 1146899998864
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu |
| >cd08375 C2_Intersectin C2 domain present in Intersectin | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.7e-13 Score=127.79 Aligned_cols=93 Identities=18% Similarity=0.240 Sum_probs=75.5
Q ss_pred ccCCCCcEEEEEECCEEEeecc---CCCCCeEeEEEEEEcCCCc--eEEEEEEecCC---CcccEEEEeehhhhhc----
Q 004680 7 FVNGKPTYVTIKIDNKKVAKTS---HEHDRVWNQTFQILCAHPA--DATITITLKTK---CSVLGKIHIQALQILN---- 74 (737)
Q Consensus 7 ~~~~~DPYv~v~l~~~~~~rTk---~~~nP~WnE~F~~~~~~~~--~l~~~V~D~d~---d~~iG~~~ipl~~l~~---- 74 (737)
..|++||||++.+++.. .||+ ++.||+|||+|.|.+.+.. .|.|+|+|+|. |++||++.|+++++..
T Consensus 32 ~~g~~DPYv~v~~~~~~-~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~~~~d~~lG~~~i~l~~l~~~~~~ 110 (136)
T cd08375 32 SNGKSDPYCEVSMGSQE-HKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRDFFSPDDFLGRTEIRVADILKETKE 110 (136)
T ss_pred CCCCcCcEEEEEECCEe-eeccccCCCCCCccCceEEEEecCccCCEEEEEEEECCCCCCCCeeEEEEEEHHHhcccccc
Confidence 46899999999998765 5888 9999999999999997754 89999999986 8999999999999993
Q ss_pred ccccccceEecccCCCCCCCCccEEEEEecc
Q 004680 75 EASLISGFFPLEMENGKPNPDLRLRFMLWFK 105 (737)
Q Consensus 75 ~g~~~d~w~~L~~~~~k~~~~~~l~l~l~f~ 105 (737)
....+..|++|. ++ ..|+|++++.|.
T Consensus 111 ~~~~~~~~~~~~---~~--~~g~i~l~~~~~ 136 (136)
T cd08375 111 SKGPITKRLLLH---EV--PTGEVVVKLDLQ 136 (136)
T ss_pred CCCcEEEEeccc---cc--cceeEEEEEEeC
Confidence 133455677663 22 347899998873
|
A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro |
| >cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.2e-13 Score=128.03 Aligned_cols=77 Identities=22% Similarity=0.314 Sum_probs=66.6
Q ss_pred cCCCCcEEEEEECC----EEEeecc---CCCCCeEeEEEEEEcCCCc---eEEEEEEecCC----CcccEEEEeehhhhh
Q 004680 8 VNGKPTYVTIKIDN----KKVAKTS---HEHDRVWNQTFQILCAHPA---DATITITLKTK----CSVLGKIHIQALQIL 73 (737)
Q Consensus 8 ~~~~DPYv~v~l~~----~~~~rTk---~~~nP~WnE~F~~~~~~~~---~l~~~V~D~d~----d~~iG~~~ipl~~l~ 73 (737)
.|++||||+|.|.. ....||+ ++.||+|||+|.|.+.+.. .|.|+|+|++. +++||++.|||.++.
T Consensus 29 ~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~~~~~~~~~lG~~~i~l~~~~ 108 (119)
T cd08685 29 SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNKLSKSRDSGLLGCMSFGVKSIV 108 (119)
T ss_pred CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECCCCCcCCCEEEEEEEecHHHhc
Confidence 47899999999953 3345787 8999999999999997653 79999999885 689999999999999
Q ss_pred cccccccceEec
Q 004680 74 NEASLISGFFPL 85 (737)
Q Consensus 74 ~~g~~~d~w~~L 85 (737)
.++.++.||.|
T Consensus 109 -~~~~~~~Wy~l 119 (119)
T cd08685 109 -NQKEISGWYYL 119 (119)
T ss_pred -cCccccceEeC
Confidence 89889999986
|
This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho |
| >cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.6e-13 Score=124.93 Aligned_cols=76 Identities=22% Similarity=0.313 Sum_probs=67.3
Q ss_pred CCCCcEEEEEECCEEEeecc--CCCCCeEeEEEEEEcCCCc-eEEEEEEecCC--CcccEEEEeehhhhhcccccc--cc
Q 004680 9 NGKPTYVTIKIDNKKVAKTS--HEHDRVWNQTFQILCAHPA-DATITITLKTK--CSVLGKIHIQALQILNEASLI--SG 81 (737)
Q Consensus 9 ~~~DPYv~v~l~~~~~~rTk--~~~nP~WnE~F~~~~~~~~-~l~~~V~D~d~--d~~iG~~~ipl~~l~~~g~~~--d~ 81 (737)
++.||||.|.+++.+ .||+ +..||+|||+|.|.+.+.. .|+|+|+|+|. ||+||++.|||+++. .+... ..
T Consensus 18 ~~~dPYV~Ik~g~~k-~kT~v~~~~nP~WnE~F~F~~~~~~~~L~v~V~dkd~~~DD~lG~v~i~L~~v~-~~~~~~~~~ 95 (127)
T cd08394 18 DKFNTYVTLKVQNVK-STTIAVRGSQPCWEQDFMFEINRLDLGLVIELWNKGLIWDTLVGTVWIPLSTIR-QSNEEGPGE 95 (127)
T ss_pred CCCCCeEEEEECCEE-eEeeECCCCCCceeeEEEEEEcCCCCEEEEEEEeCCCcCCCceEEEEEEhHHcc-cCCCCCCCc
Confidence 567999999999865 5888 6679999999999998877 89999999997 999999999999999 55555 79
Q ss_pred eEecc
Q 004680 82 FFPLE 86 (737)
Q Consensus 82 w~~L~ 86 (737)
|++|.
T Consensus 96 Wy~L~ 100 (127)
T cd08394 96 WLTLD 100 (127)
T ss_pred cEecC
Confidence 99996
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi |
| >cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.3e-13 Score=125.07 Aligned_cols=96 Identities=19% Similarity=0.214 Sum_probs=75.2
Q ss_pred ccCCCCcEEEEEECCEEEeecc---CCCCCeEeEEEEEEcCCCceEEEEEEecCC-----CcccEEEEeehhhhhccccc
Q 004680 7 FVNGKPTYVTIKIDNKKVAKTS---HEHDRVWNQTFQILCAHPADATITITLKTK-----CSVLGKIHIQALQILNEASL 78 (737)
Q Consensus 7 ~~~~~DPYv~v~l~~~~~~rTk---~~~nP~WnE~F~~~~~~~~~l~~~V~D~d~-----d~~iG~~~ipl~~l~~~g~~ 78 (737)
..+++||||+|.+++..+.||+ ++.||+|||+|+|++.+...|.|+|+|++. +++||++.++++++......
T Consensus 17 ~~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~~~~l~i~V~d~~~~~~~~d~~lG~~~i~l~~l~~~~~~ 96 (123)
T cd08382 17 LFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGPSSIITIQVFDQKKFKKKDQGFLGCVRIRANAVLPLKDT 96 (123)
T ss_pred CCCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCCCCEEEEEEEECCCCCCCCCceEeEEEEEHHHccccCCC
Confidence 3578999999999876677998 899999999999999663399999999986 37999999999999844434
Q ss_pred ccceEecccCCCCCC--CCccEEEEE
Q 004680 79 ISGFFPLEMENGKPN--PDLRLRFML 102 (737)
Q Consensus 79 ~d~w~~L~~~~~k~~--~~~~l~l~l 102 (737)
...|++|........ ..|+|.+.+
T Consensus 97 ~~~~~~l~~~~~~~~~~~~G~v~~~~ 122 (123)
T cd08382 97 GYQRLDLRKLKKSDNLSVRGKIVVSL 122 (123)
T ss_pred ccceeEeecCCCCCCceEeeEEEEEe
Confidence 478999965432211 346676665
|
A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are |
| >cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.4e-13 Score=126.84 Aligned_cols=90 Identities=19% Similarity=0.301 Sum_probs=75.9
Q ss_pred cCCCCcEEEEEECCEEEeecc----CCCCCeEeEEEEEEcCCC-----c-eEEEEEEecCC---CcccEEEEeehhhhhc
Q 004680 8 VNGKPTYVTIKIDNKKVAKTS----HEHDRVWNQTFQILCAHP-----A-DATITITLKTK---CSVLGKIHIQALQILN 74 (737)
Q Consensus 8 ~~~~DPYv~v~l~~~~~~rTk----~~~nP~WnE~F~~~~~~~-----~-~l~~~V~D~d~---d~~iG~~~ipl~~l~~ 74 (737)
.+++||||+|.+++....||+ ++.||+|||+|+|.+.+. . .|.|+|+|++. +++||++.|||.++.
T Consensus 18 ~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~l~- 96 (125)
T cd04051 18 FGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERPSLGDKLIGEVRVPLKDLL- 96 (125)
T ss_pred ccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCCCCCCCcEEEEEEEHHHhh-
Confidence 478999999999884445776 589999999999999887 5 99999999986 899999999999999
Q ss_pred ccccc-----cceEecccCCCCCCCCccEEE
Q 004680 75 EASLI-----SGFFPLEMENGKPNPDLRLRF 100 (737)
Q Consensus 75 ~g~~~-----d~w~~L~~~~~k~~~~~~l~l 100 (737)
.+... ..|++|.+++|++ .|.|+|
T Consensus 97 ~~~~~~~~~~~~~~~l~~~~g~~--~G~~~~ 125 (125)
T cd04051 97 DGASPAGELRFLSYQLRRPSGKP--QGVLNF 125 (125)
T ss_pred cccCCCCcceeEEEEeECCCCCc--CeEEeC
Confidence 55443 6899999888885 466764
|
SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such |
| >cd04046 C2_Calpain C2 domain present in Calpain proteins | Back alignment and domain information |
|---|
Probab=99.43 E-value=8.5e-13 Score=123.62 Aligned_cols=95 Identities=15% Similarity=0.116 Sum_probs=77.5
Q ss_pred cCCCCcEEEEEECCEEEeecc---CCCCCeEeEEEEEEcCCCc-eEEEEEEecCC--CcccEEEEeehhhhhcccccccc
Q 004680 8 VNGKPTYVTIKIDNKKVAKTS---HEHDRVWNQTFQILCAHPA-DATITITLKTK--CSVLGKIHIQALQILNEASLISG 81 (737)
Q Consensus 8 ~~~~DPYv~v~l~~~~~~rTk---~~~nP~WnE~F~~~~~~~~-~l~~~V~D~d~--d~~iG~~~ipl~~l~~~g~~~d~ 81 (737)
.|++||||+|.+++... ||+ ++.||+|||+|.|.+.... .|.|+|+|++. |++||.+++++..+. .....
T Consensus 21 ~g~~dPyv~v~~~~~~~-kT~v~~~t~nP~Wne~f~f~~~~~~~~l~i~V~d~~~~~d~~lG~~~~~l~~~~---~~~~~ 96 (126)
T cd04046 21 GGGADPYVIIKCEGESV-RSPVQKDTLSPEFDTQAIFYRKKPRSPIKIQVWNSNLLCDEFLGQATLSADPND---SQTLR 96 (126)
T ss_pred CCCcCccEEEEECCEEE-EeCccCCCCCCcccceEEEEecCCCCEEEEEEEECCCCCCCceEEEEEecccCC---CcCce
Confidence 47899999999998764 888 8999999999999988777 99999999987 999999999998754 34457
Q ss_pred eEecccCCCCCC--CCccEEEEEeccC
Q 004680 82 FFPLEMENGKPN--PDLRLRFMLWFKP 106 (737)
Q Consensus 82 w~~L~~~~~k~~--~~~~l~l~l~f~~ 106 (737)
|++|.....++. ..|.|.+++++.+
T Consensus 97 ~~~l~~~~~~~~~~~~G~i~~~~~~~~ 123 (126)
T cd04046 97 TLPLRKRGRDAAGEVPGTISVKVTSSD 123 (126)
T ss_pred EEEcccCCCCCCCCCCCEEEEEEEEcc
Confidence 788853221111 4689999998876
|
A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic |
| >cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group | Back alignment and domain information |
|---|
Probab=99.43 E-value=7.7e-13 Score=123.56 Aligned_cols=93 Identities=15% Similarity=0.159 Sum_probs=76.9
Q ss_pred ccCCCCcEEEEEECC--EEEeecc---CCCCCeEeEEEEEEcCCC-c-eEEEEEEecCC---CcccEEEEeehhhhhc-c
Q 004680 7 FVNGKPTYVTIKIDN--KKVAKTS---HEHDRVWNQTFQILCAHP-A-DATITITLKTK---CSVLGKIHIQALQILN-E 75 (737)
Q Consensus 7 ~~~~~DPYv~v~l~~--~~~~rTk---~~~nP~WnE~F~~~~~~~-~-~l~~~V~D~d~---d~~iG~~~ipl~~l~~-~ 75 (737)
..+++||||+|.+.+ ..+.||+ ++.||+|||+|.|.+.+. . .|.|+|+|+|. +++||++.++|+.+.. .
T Consensus 18 ~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~~~~iG~~~i~l~~~~~~~ 97 (126)
T cd04043 18 SNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFVGKHDLCGRASLKLDPKRFGD 97 (126)
T ss_pred CCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCCCCCCceEEEEEEecCHHHcCC
Confidence 457899999999864 4567888 899999999999999885 3 99999999986 8999999999998762 2
Q ss_pred -cccccceEecccCCCCCCCCccEEEEEeccC
Q 004680 76 -ASLISGFFPLEMENGKPNPDLRLRFMLWFKP 106 (737)
Q Consensus 76 -g~~~d~w~~L~~~~~k~~~~~~l~l~l~f~~ 106 (737)
+...+.|++|. + .|+|++.+.+.-
T Consensus 98 ~~~~~~~w~~l~-~------~g~i~l~~~~~~ 122 (126)
T cd04043 98 DGLPREIWLDLD-T------QGRLLLRVSMEG 122 (126)
T ss_pred CCCCceEEEEcC-C------CCeEEEEEEEee
Confidence 55778999995 2 357888888753
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap |
| >cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.4e-13 Score=126.64 Aligned_cols=77 Identities=13% Similarity=0.136 Sum_probs=66.2
Q ss_pred cCCCCcEEEEEECC----EEEeecc---CCCCCeEeEEEEEEc-CC--C-c-eEEEEEEecCC---CcccEEEEeehhhh
Q 004680 8 VNGKPTYVTIKIDN----KKVAKTS---HEHDRVWNQTFQILC-AH--P-A-DATITITLKTK---CSVLGKIHIQALQI 72 (737)
Q Consensus 8 ~~~~DPYv~v~l~~----~~~~rTk---~~~nP~WnE~F~~~~-~~--~-~-~l~~~V~D~d~---d~~iG~~~ipl~~l 72 (737)
.+++||||+|.+.. ....||+ ++.||+|||+|.|.+ .. . . .|.|+|+|+|. +++||++.|||+++
T Consensus 30 ~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l 109 (122)
T cd08381 30 GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSHDSLVENEFLGGVCIPLKKL 109 (122)
T ss_pred CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeCCCCcCCcEEEEEEEecccc
Confidence 57899999999952 2345888 999999999999987 32 2 2 89999999997 99999999999999
Q ss_pred hcccccccceEec
Q 004680 73 LNEASLISGFFPL 85 (737)
Q Consensus 73 ~~~g~~~d~w~~L 85 (737)
. .++..+.|++|
T Consensus 110 ~-~~~~~~~W~~L 121 (122)
T cd08381 110 D-LSQETEKWYPL 121 (122)
T ss_pred c-cCCCccceEEC
Confidence 9 88888999987
|
There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut |
| >cd04018 C2C_Ferlin C2 domain third repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.1e-13 Score=129.39 Aligned_cols=76 Identities=25% Similarity=0.273 Sum_probs=63.5
Q ss_pred cCCCCcEEEEEECCEEEeecc---CCCCCeEeEEEEEEcC--CCc-eEEEEEEecCC---CcccEEEEeehhhhhccccc
Q 004680 8 VNGKPTYVTIKIDNKKVAKTS---HEHDRVWNQTFQILCA--HPA-DATITITLKTK---CSVLGKIHIQALQILNEASL 78 (737)
Q Consensus 8 ~~~~DPYv~v~l~~~~~~rTk---~~~nP~WnE~F~~~~~--~~~-~l~~~V~D~d~---d~~iG~~~ipl~~l~~~g~~ 78 (737)
.+++||||+|.++++++ ||+ ++.||+|||+|.|++. +.. .|.|+|+|+|. |++||++.|+|+++. . ..
T Consensus 32 ~~~~DPYV~V~~~g~~~-kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~~~v~D~d~~~~dd~iG~~~l~l~~l~-~-~~ 108 (151)
T cd04018 32 KELVDPYVEVSFAGQKV-KTSVKKNSYNPEWNEQIVFPEMFPPLCERIKIQIRDWDRVGNDDVIGTHFIDLSKIS-N-SG 108 (151)
T ss_pred CCCcCcEEEEEECCEee-ecceEcCCCCCCcceEEEEEeeCCCcCCEEEEEEEECCCCCCCCEEEEEEEeHHHhc-c-CC
Confidence 46889999999999875 888 9999999999999864 345 99999999996 999999999999998 3 34
Q ss_pred ccceEecc
Q 004680 79 ISGFFPLE 86 (737)
Q Consensus 79 ~d~w~~L~ 86 (737)
.+.|+|+.
T Consensus 109 ~~~~lp~~ 116 (151)
T cd04018 109 DEGFLPTF 116 (151)
T ss_pred ccccCCcc
Confidence 55555444
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd04011 C2B_Ferlin C2 domain second repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.7e-13 Score=123.10 Aligned_cols=78 Identities=12% Similarity=0.167 Sum_probs=67.6
Q ss_pred cCCCCcEEEEEECCEEEeecc---CCCCCeEeEEEEEEcCCC-----c-eEEEEEEecCC---CcccEEEEeehhhhhcc
Q 004680 8 VNGKPTYVTIKIDNKKVAKTS---HEHDRVWNQTFQILCAHP-----A-DATITITLKTK---CSVLGKIHIQALQILNE 75 (737)
Q Consensus 8 ~~~~DPYv~v~l~~~~~~rTk---~~~nP~WnE~F~~~~~~~-----~-~l~~~V~D~d~---d~~iG~~~ipl~~l~~~ 75 (737)
.|++||||+|.+++++. ||+ ++.||+|||+|.|.+..+ . .|.|+|+|++. +++||++.|+|+++. .
T Consensus 18 ~~~~dpyv~v~~~~~~~-kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~v~-~ 95 (111)
T cd04011 18 GGNIDPVVKVEVGGQKK-YTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSLRSDTLIGSFKLDVGTVY-D 95 (111)
T ss_pred CCCCCCEEEEEECCEee-eeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCcccccCCccEEEEECCcccc-C
Confidence 57899999999998764 787 899999999999997553 2 79999999986 899999999999997 4
Q ss_pred c---ccccceEeccc
Q 004680 76 A---SLISGFFPLEM 87 (737)
Q Consensus 76 g---~~~d~w~~L~~ 87 (737)
+ ...+.|++|.+
T Consensus 96 ~~~~~~~~~w~~L~~ 110 (111)
T cd04011 96 QPDHAFLRKWLLLTD 110 (111)
T ss_pred CCCCcceEEEEEeeC
Confidence 4 55799999975
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme |
| >PRK12452 cardiolipin synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.1e-12 Score=150.15 Aligned_cols=153 Identities=17% Similarity=0.215 Sum_probs=115.7
Q ss_pred CceeEEeeccCCCCCCCCCCcCCCCchhHHHHHHHHHHccccEEEEEEeecCCceEEeeCCchhhccchHHHHHHHHHHH
Q 004680 135 NCHVKLYHDAHHSSSFEPPYDLCGSPGKLWEDVYKAIEGAKHLIYIAGWSLNPKMVLVRDSQTEIAHARGVQLGELLKHK 214 (737)
Q Consensus 135 gn~v~ly~dg~~~~~f~p~~~~~~~~~~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~L~r~~~~~~~~~~~~~l~~lL~~k 214 (737)
.+.++++.+|. +.. ...+++.++++|.+||++|+|++.-| + + +..+.++|+.|
T Consensus 328 ~~~~q~~~sgp--~~~---------~~~i~~~~l~~I~~A~~~I~I~tpYf------~-p---------d~~l~~aL~~A 380 (509)
T PRK12452 328 EGAVQIVASGP--SSD---------DKSIRNTLLAVMGSAKKSIWIATPYF------I-P---------DQETLTLLRLS 380 (509)
T ss_pred CeEEEEEeCCC--Cch---------hHHHHHHHHHHHHHhhhEEEEECCcc------C-C---------CHHHHHHHHHH
Confidence 34789999883 111 24889999999999999999997433 2 2 24789999999
Q ss_pred HHcCCeEEEEEeCCCCCccccccccccccccHHHHHHHhcCCcEEEEcCCCCCCCCccccCccceEEecCCCcCcccccc
Q 004680 215 AEEGVAVRIMLWDDETSLPIIKNKGVMRTHDEDAFAYFKHTKVICKLCPRLHHKFPTLFAHHQKTITVDARAQDSIFDRE 294 (737)
Q Consensus 215 A~rGV~VriLvwD~~~s~~~~~~~g~~~~~~~~~~~~l~~~gv~v~~~~r~~~~~~~~~~hHqK~vVVD~~~~~~~~~~~ 294 (737)
|+|||+|+||+ +......... .......+.|.++||++..+.. ...|+|++|||++
T Consensus 381 a~rGV~Vrii~-p~~~D~~~~~------~a~~~~~~~L~~aGv~I~~y~~--------~~lHaK~~ivD~~--------- 436 (509)
T PRK12452 381 AISGIDVRILY-PGKSDSIISD------QASQSYFTPLLKAGASIYSYKD--------GFMHAKIVLVDDK--------- 436 (509)
T ss_pred HHcCCEEEEEc-CCCCChHHHH------HHHHHHHHHHHHcCCEEEEecC--------CCeeeeEEEECCC---------
Confidence 99999999998 7654332211 0112445677889999976542 3589999999999
Q ss_pred eEEEEccccCCCCCcCCCCCcccccCCCCcccCccccccccCcccCCCCCCCCceeccceeeCHHHHHHHHHHHHHhhhc
Q 004680 295 IMSFVGGLDLCDGRYDTEKHSLFQTLNSESHCFDFYQINIAGASLHKGGPREPWHDVHACITGEAAWDVLTNFEQRWTKQ 374 (737)
Q Consensus 295 ~vAfvGG~nL~~~r~Dt~~H~l~~~l~~~~~~~d~~~~~~~g~~~~~~~~~~pWhDv~~~v~Gpav~dl~~~F~~rW~~~ 374 (737)
+|++||.|+....+. ..|.+..+..+++.|.++.+.|.++|..+
T Consensus 437 -~a~vGS~Nld~RS~~-----------------------------------~n~E~~~~i~~~~~~~~l~~~f~~d~~~s 480 (509)
T PRK12452 437 -IATIGTANMDVRSFE-----------------------------------LNYEIISVLYESETVHDIKRDFEDDFKHS 480 (509)
T ss_pred -EEEEeCcccCHhHhh-----------------------------------hhhhccEEEECHHHHHHHHHHHHHHHHhC
Confidence 999999999774221 24667788888999999999999999864
|
|
| >PRK13912 nuclease NucT; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=4.3e-12 Score=125.93 Aligned_cols=140 Identities=18% Similarity=0.226 Sum_probs=99.9
Q ss_pred hhHHHHHHHHHHccccEEEEEEeecCCceEEeeCCchhhccchHHHHHHHHHHHHHcCCeEEEEEeCCCCCccccccccc
Q 004680 161 GKLWEDVYKAIEGAKHLIYIAGWSLNPKMVLVRDSQTEIAHARGVQLGELLKHKAEEGVAVRIMLWDDETSLPIIKNKGV 240 (737)
Q Consensus 161 ~~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~L~r~~~~~~~~~~~~~l~~lL~~kA~rGV~VriLvwD~~~s~~~~~~~g~ 240 (737)
.+.++.++++|.+|+++|+|+.|.+. ...+.++|..|++|||+|+||+ |...+...
T Consensus 32 ~~~~~~l~~~I~~Ak~sI~i~~Y~~~-----------------~~~i~~aL~~Aa~RGV~VrIll-d~~~~~~~------ 87 (177)
T PRK13912 32 KDALNKLVSLISNARSSIKIAIYSFT-----------------HKDIAKALKSAAKRGVKISIIY-DYESNHNN------ 87 (177)
T ss_pred HHHHHHHHHHHHhcccEEEEEEEEEc-----------------hHHHHHHHHHHHHCCCEEEEEE-eCccccCc------
Confidence 46789999999999999999987653 2479999999999999999997 87644311
Q ss_pred cccccHHHHHHHh-cCCcEEEEcCCCCC-CCCccccCccceEEecCCCcCcccccceEEEEccccCCCCCcCCCCCcccc
Q 004680 241 MRTHDEDAFAYFK-HTKVICKLCPRLHH-KFPTLFAHHQKTITVDARAQDSIFDREIMSFVGGLDLCDGRYDTEKHSLFQ 318 (737)
Q Consensus 241 ~~~~~~~~~~~l~-~~gv~v~~~~r~~~-~~~~~~~hHqK~vVVD~~~~~~~~~~~~vAfvGG~nL~~~r~Dt~~H~l~~ 318 (737)
+..+..++. ..++++........ .......+|+|++|||++ ++|+||.|++...+..
T Consensus 88 ----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~H~K~~viD~~----------~~~iGS~N~t~~s~~~------- 146 (177)
T PRK13912 88 ----DQSTIGYLDKYPNIKVCLLKGLKAKNGKYYGIMHQKVAIIDDK----------IVVLGSANWSKNAFEN------- 146 (177)
T ss_pred ----chhHHHHHHhCCCceEEEecCccccCcccccccceeEEEEcCC----------EEEEeCCCCChhHhcc-------
Confidence 011222332 24666654321100 112345789999999999 9999999999864321
Q ss_pred cCCCCcccCccccccccCcccCCCCCCCCceeccceeeCH-HHHHHHHHHHHHhhhc
Q 004680 319 TLNSESHCFDFYQINIAGASLHKGGPREPWHDVHACITGE-AAWDVLTNFEQRWTKQ 374 (737)
Q Consensus 319 ~l~~~~~~~d~~~~~~~g~~~~~~~~~~pWhDv~~~v~Gp-av~dl~~~F~~rW~~~ 374 (737)
-+++.+.+..| .+.++.+.|.+.|...
T Consensus 147 -----------------------------N~E~~lii~d~~~~~~~~~~F~~~~~~s 174 (177)
T PRK13912 147 -----------------------------NYEVLLITDDTETILKAKEYFQKMLGSC 174 (177)
T ss_pred -----------------------------CCceEEEECCHHHHHHHHHHHHHHHHhc
Confidence 13556788887 5788999999999864
|
|
| >cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.41 E-value=8.1e-13 Score=122.75 Aligned_cols=81 Identities=16% Similarity=0.262 Sum_probs=72.5
Q ss_pred ccCCCCcEEEEEECCEEEeecc---CCCCCeEeEEEEEEcCCCc-eEEEEEEecCC---CcccEEEEeehhhhhcccccc
Q 004680 7 FVNGKPTYVTIKIDNKKVAKTS---HEHDRVWNQTFQILCAHPA-DATITITLKTK---CSVLGKIHIQALQILNEASLI 79 (737)
Q Consensus 7 ~~~~~DPYv~v~l~~~~~~rTk---~~~nP~WnE~F~~~~~~~~-~l~~~V~D~d~---d~~iG~~~ipl~~l~~~g~~~ 79 (737)
..+++||||+|.++++.+.||+ ++.||+|||+|.|++.+.. .|.|+|+|++. |++||++.++|.++. .+ ..
T Consensus 18 ~~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~~~~L~v~v~d~~~~~~d~~IG~~~~~l~~l~-~~-~~ 95 (120)
T cd04045 18 GVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSPNQKITLEVMDYEKVGKDRSLGSVEINVSDLI-KK-NE 95 (120)
T ss_pred CCCCcCCEEEEEECCEEeeceeEECCCcCCccCceEEEEecCCCCEEEEEEEECCCCCCCCeeeEEEEeHHHhh-CC-CC
Confidence 4579999999999887778888 8999999999999998887 99999999987 889999999999999 55 77
Q ss_pred cceEecccCC
Q 004680 80 SGFFPLEMEN 89 (737)
Q Consensus 80 d~w~~L~~~~ 89 (737)
+.||.|++.+
T Consensus 96 ~~~~~~~~~~ 105 (120)
T cd04045 96 DGKYVEYDDE 105 (120)
T ss_pred CceEEecCCC
Confidence 9999998644
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8 | Back alignment and domain information |
|---|
Probab=99.41 E-value=4.5e-13 Score=124.90 Aligned_cols=79 Identities=6% Similarity=0.184 Sum_probs=69.6
Q ss_pred ccCCCCcEEEEEE--CCEEEeecc---CCCCCeEeEEEEEEcCCC---c-eEEEEEEecCC---CcccEEEEeehhhhhc
Q 004680 7 FVNGKPTYVTIKI--DNKKVAKTS---HEHDRVWNQTFQILCAHP---A-DATITITLKTK---CSVLGKIHIQALQILN 74 (737)
Q Consensus 7 ~~~~~DPYv~v~l--~~~~~~rTk---~~~nP~WnE~F~~~~~~~---~-~l~~~V~D~d~---d~~iG~~~ipl~~l~~ 74 (737)
+.|++||||+|.+ ++..+.||+ ++.||+|||+|.|.+.+. . .|.|+|+|+|. +++||++.|+|+++.
T Consensus 33 ~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~- 111 (124)
T cd08387 33 FSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLYDFDQFSRDECIGVVELPLAEVD- 111 (124)
T ss_pred CCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEEECCCCCCCceeEEEEEeccccc-
Confidence 4578999999999 445567888 999999999999998765 3 89999999986 899999999999998
Q ss_pred ccccccceEecc
Q 004680 75 EASLISGFFPLE 86 (737)
Q Consensus 75 ~g~~~d~w~~L~ 86 (737)
.+...+.|++|.
T Consensus 112 ~~~~~~~W~~l~ 123 (124)
T cd08387 112 LSEKLDLWRKIQ 123 (124)
T ss_pred CCCCcceEEECc
Confidence 777999999985
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv |
| >cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.5e-12 Score=122.17 Aligned_cols=91 Identities=18% Similarity=0.368 Sum_probs=74.2
Q ss_pred cCCCCcEEEEEECCEEEeecc---CCCCCeEeEEEEEEcCCCc-eEEEEEEecC-------------C-CcccEEEEeeh
Q 004680 8 VNGKPTYVTIKIDNKKVAKTS---HEHDRVWNQTFQILCAHPA-DATITITLKT-------------K-CSVLGKIHIQA 69 (737)
Q Consensus 8 ~~~~DPYv~v~l~~~~~~rTk---~~~nP~WnE~F~~~~~~~~-~l~~~V~D~d-------------~-d~~iG~~~ipl 69 (737)
.|++||||+|.+++. ..||+ ++.||+|||+|.|.+.+.. .|.|+|+|+| . +++||.+.+++
T Consensus 19 ~g~~DPyv~v~~~~~-~~kT~~v~~t~~P~Wne~f~f~~~~~~~~l~i~v~d~d~~~~~~~~~~~~~~~~~~iG~~~i~l 97 (127)
T cd04027 19 TGTSDPYVTVQVGKT-KKRTKTIPQNLNPVWNEKFHFECHNSSDRIKVRVWDEDDDIKSRLKQKFTRESDDFLGQTIIEV 97 (127)
T ss_pred CCCcCcEEEEEECCE-eeecceecCCCCCccceEEEEEecCCCCEEEEEEEECCCCcccccceeccccCCCcceEEEEEh
Confidence 478999999999875 45888 8999999999999998776 9999999997 2 88999999999
Q ss_pred hhhhcccccccceEecccCCCCCCCCccEEEEE
Q 004680 70 LQILNEASLISGFFPLEMENGKPNPDLRLRFML 102 (737)
Q Consensus 70 ~~l~~~g~~~d~w~~L~~~~~k~~~~~~l~l~l 102 (737)
.++. ...+.|++|....++....|+|.+++
T Consensus 98 ~~~~---~~~~~w~~L~~~~~~~~~~G~i~~~~ 127 (127)
T cd04027 98 RTLS---GEMDVWYNLEKRTDKSAVSGAIRLHI 127 (127)
T ss_pred HHcc---CCCCeEEECccCCCCCcEeEEEEEEC
Confidence 9875 23579999985444433567787764
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev |
| >cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Probab=99.40 E-value=6.8e-13 Score=127.05 Aligned_cols=80 Identities=15% Similarity=0.152 Sum_probs=67.3
Q ss_pred cCCCCcEEEEEE--CCEE--Eeecc---CCCCCeEeEEEEEEcCCCc-eEEEEEE-ecCC---CcccEEEEeehhhhhcc
Q 004680 8 VNGKPTYVTIKI--DNKK--VAKTS---HEHDRVWNQTFQILCAHPA-DATITIT-LKTK---CSVLGKIHIQALQILNE 75 (737)
Q Consensus 8 ~~~~DPYv~v~l--~~~~--~~rTk---~~~nP~WnE~F~~~~~~~~-~l~~~V~-D~d~---d~~iG~~~ipl~~l~~~ 75 (737)
.|.+||||++.| ++++ ..||| +++||+|||+|.|.+.-.. .|.|+|+ |.+. +++||++.|+|+++. .
T Consensus 48 ~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~l~~~~L~v~V~~d~~~~~~~~~iG~~~i~L~~l~-~ 126 (146)
T cd04028 48 KVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVSPTGKTLQVIVWGDYGRMDKKVFMGVAQILLDDLD-L 126 (146)
T ss_pred CCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEcCCCCEEEEEEEeCCCCCCCCceEEEEEEEccccc-C
Confidence 467899999999 3322 35777 9999999999999997444 9999999 5665 899999999999987 7
Q ss_pred cccccceEecccC
Q 004680 76 ASLISGFFPLEME 88 (737)
Q Consensus 76 g~~~d~w~~L~~~ 88 (737)
++....|++|..+
T Consensus 127 ~~~~~~Wy~L~~~ 139 (146)
T cd04028 127 SNLVIGWYKLFPT 139 (146)
T ss_pred CCCceeEEecCCc
Confidence 8889999999853
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as |
| >cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.4e-12 Score=119.71 Aligned_cols=82 Identities=18% Similarity=0.290 Sum_probs=72.6
Q ss_pred cCCCCcEEEEEECCEEEeecc---CCCCCeEeEEEEEEcCCC-c-eEEEEEEecCC---CcccEEEEeehhhhhcccccc
Q 004680 8 VNGKPTYVTIKIDNKKVAKTS---HEHDRVWNQTFQILCAHP-A-DATITITLKTK---CSVLGKIHIQALQILNEASLI 79 (737)
Q Consensus 8 ~~~~DPYv~v~l~~~~~~rTk---~~~nP~WnE~F~~~~~~~-~-~l~~~V~D~d~---d~~iG~~~ipl~~l~~~g~~~ 79 (737)
.+++||||+|.+++..+.||+ ++.||+|||+|.|.+... . .+.|+|+|++. +++||++.+++.++. .+...
T Consensus 17 ~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~~~~~iG~~~~~l~~l~-~~~~~ 95 (115)
T cd04040 17 NGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGGKDDLLGSAYIDLSDLE-PEETT 95 (115)
T ss_pred CCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCCCCCceEEEEEEHHHcC-CCCcE
Confidence 468899999999887778998 999999999999999775 3 89999999986 899999999999999 78889
Q ss_pred cceEecccCCC
Q 004680 80 SGFFPLEMENG 90 (737)
Q Consensus 80 d~w~~L~~~~~ 90 (737)
+.|++|....+
T Consensus 96 ~~~~~L~~~g~ 106 (115)
T cd04040 96 ELTLPLDGQGG 106 (115)
T ss_pred EEEEECcCCCC
Confidence 99999975433
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5 | Back alignment and domain information |
|---|
Probab=99.39 E-value=6.1e-13 Score=124.46 Aligned_cols=78 Identities=19% Similarity=0.239 Sum_probs=67.0
Q ss_pred cCCCCcEEEEEEC--C--EEEeecc---CCCCCeEeEEEEEEcCCC---c-eEEEEEEecCC---CcccEEEEeehhhhh
Q 004680 8 VNGKPTYVTIKID--N--KKVAKTS---HEHDRVWNQTFQILCAHP---A-DATITITLKTK---CSVLGKIHIQALQIL 73 (737)
Q Consensus 8 ~~~~DPYv~v~l~--~--~~~~rTk---~~~nP~WnE~F~~~~~~~---~-~l~~~V~D~d~---d~~iG~~~ipl~~l~ 73 (737)
.|++||||+|.+. + ....||+ ++.||+|||+|.|.+... . .|.|+|+|+|. +++||++.|+|.++.
T Consensus 34 ~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~V~d~~~~~~~~~lG~~~i~l~~~~ 113 (125)
T cd04029 34 KKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLSVWHYDRFGRNTFLGEVEIPLDSWN 113 (125)
T ss_pred CCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEEEEECCCCCCCcEEEEEEEeCCccc
Confidence 4789999999994 2 2234777 899999999999998663 2 79999999986 899999999999998
Q ss_pred cccccccceEecc
Q 004680 74 NEASLISGFFPLE 86 (737)
Q Consensus 74 ~~g~~~d~w~~L~ 86 (737)
..+..+.|++|.
T Consensus 114 -~~~~~~~w~~l~ 125 (125)
T cd04029 114 -FDSQHEECLPLH 125 (125)
T ss_pred -ccCCcccEEECc
Confidence 888999999983
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2 |
| >cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.4e-12 Score=120.44 Aligned_cols=95 Identities=20% Similarity=0.297 Sum_probs=74.3
Q ss_pred cCCCCcEEEEEECCEEEeecc---CCCCCeEeEEEEEEcCCCceEEEEEEecCC---CcccEEEEeehhhhhcc--ccc-
Q 004680 8 VNGKPTYVTIKIDNKKVAKTS---HEHDRVWNQTFQILCAHPADATITITLKTK---CSVLGKIHIQALQILNE--ASL- 78 (737)
Q Consensus 8 ~~~~DPYv~v~l~~~~~~rTk---~~~nP~WnE~F~~~~~~~~~l~~~V~D~d~---d~~iG~~~ipl~~l~~~--g~~- 78 (737)
.+++||||.|.+++..+.||+ ++.||+|||+|.|.+.....|.|+|+|++. +++||++.++|+++... +..
T Consensus 19 ~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~ 98 (125)
T cd04021 19 SFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVTPQSTLEFKVWSHHTLKADVLLGEASLDLSDILKNHNGKLE 98 (125)
T ss_pred CCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeCCCCEEEEEEEeCCCCCCCcEEEEEEEEHHHhHhhcCCCcc
Confidence 467999999999987667888 899999999999998654499999999987 89999999999999841 222
Q ss_pred -ccceEecccCCC-CCCCCccEEEEE
Q 004680 79 -ISGFFPLEMENG-KPNPDLRLRFML 102 (737)
Q Consensus 79 -~d~w~~L~~~~~-k~~~~~~l~l~l 102 (737)
...|++|..++. .-...|+|++.+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~G~~~~~~ 124 (125)
T cd04021 99 NVKLTLNLSSENKGSSVKVGELTVIL 124 (125)
T ss_pred ceEEEEEEEccCCCcceeeeeEEEEe
Confidence 345899974331 111457787765
|
E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e |
| >cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.4e-12 Score=121.49 Aligned_cols=79 Identities=16% Similarity=0.245 Sum_probs=68.7
Q ss_pred ccCCCCcEEEEEEC--CEEEeecc---CCCCCeEeEEEEEEcCCC---c-eEEEEEEecCC---CcccEEEEeehhhhhc
Q 004680 7 FVNGKPTYVTIKID--NKKVAKTS---HEHDRVWNQTFQILCAHP---A-DATITITLKTK---CSVLGKIHIQALQILN 74 (737)
Q Consensus 7 ~~~~~DPYv~v~l~--~~~~~rTk---~~~nP~WnE~F~~~~~~~---~-~l~~~V~D~d~---d~~iG~~~ipl~~l~~ 74 (737)
..+++||||+|.+. +.++.||+ ++.||+|||+|.|.+... . .|.|+|+|+|. +++||++.|||+++.
T Consensus 33 ~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~~~- 111 (124)
T cd08385 33 MGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYDFDRFSKHDLIGEVRVPLLTVD- 111 (124)
T ss_pred CCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEeCCCCCCCceeEEEEEecCccc-
Confidence 35789999999994 34566888 899999999999998653 3 89999999986 899999999999998
Q ss_pred ccccccceEecc
Q 004680 75 EASLISGFFPLE 86 (737)
Q Consensus 75 ~g~~~d~w~~L~ 86 (737)
.+...+.|++|.
T Consensus 112 ~~~~~~~W~~l~ 123 (124)
T cd08385 112 LGHVTEEWRDLE 123 (124)
T ss_pred CCCCcceEEEcc
Confidence 788999999984
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and |
| >cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2 | Back alignment and domain information |
|---|
Probab=99.36 E-value=1e-12 Score=122.96 Aligned_cols=77 Identities=17% Similarity=0.246 Sum_probs=66.0
Q ss_pred CCCCcEEEEEEC--C--EEEeecc---CCCCCeEeEEEEEEcCCC---c-eEEEEEEecCC---CcccEEEEeehhhhhc
Q 004680 9 NGKPTYVTIKID--N--KKVAKTS---HEHDRVWNQTFQILCAHP---A-DATITITLKTK---CSVLGKIHIQALQILN 74 (737)
Q Consensus 9 ~~~DPYv~v~l~--~--~~~~rTk---~~~nP~WnE~F~~~~~~~---~-~l~~~V~D~d~---d~~iG~~~ipl~~l~~ 74 (737)
|++||||+|.+. + ....||+ ++.||+|||+|.|.+... . .|.|+|+|+|. +++||++.|||.++.
T Consensus 35 g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~V~d~~~~~~~~~iG~~~i~L~~~~- 113 (125)
T cd08393 35 QRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLSVWHRDSLGRNSFLGEVEVDLGSWD- 113 (125)
T ss_pred CCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHHhCCCEEEEEEEeCCCCCCCcEeEEEEEecCccc-
Confidence 789999999993 2 2235787 999999999999998653 2 89999999986 899999999999998
Q ss_pred ccccccceEecc
Q 004680 75 EASLISGFFPLE 86 (737)
Q Consensus 75 ~g~~~d~w~~L~ 86 (737)
.++....|++|.
T Consensus 114 ~~~~~~~W~~L~ 125 (125)
T cd08393 114 WSNTQPTWYPLQ 125 (125)
T ss_pred cCCCCcceEECc
Confidence 778889999984
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety |
| >cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD) | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.6e-12 Score=117.06 Aligned_cols=67 Identities=19% Similarity=0.259 Sum_probs=58.4
Q ss_pred CCCCcEEEEEECCEEEeecc---CCCCCeEeEEEEEEcCCCc---eEEEEEEecCC---CcccEEEEeehhhhhcccc
Q 004680 9 NGKPTYVTIKIDNKKVAKTS---HEHDRVWNQTFQILCAHPA---DATITITLKTK---CSVLGKIHIQALQILNEAS 77 (737)
Q Consensus 9 ~~~DPYv~v~l~~~~~~rTk---~~~nP~WnE~F~~~~~~~~---~l~~~V~D~d~---d~~iG~~~ipl~~l~~~g~ 77 (737)
+++||||+|.+++. +.||+ ++.||+|||+|.|.+.+.. .|.|+|+|+|. |++||+++|+|++|+ .++
T Consensus 24 ~~~DPYv~v~~~~~-~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~~~~dd~IG~~~l~L~~l~-~~~ 99 (108)
T cd04039 24 FDMDPFVIISFGRR-VFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDKFSFNDYVATGSLSVQELL-NAA 99 (108)
T ss_pred CccCceEEEEECCE-eEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCCCCCCcceEEEEEEHHHHH-hhC
Confidence 45899999999865 45888 8999999999999986543 79999999996 999999999999999 554
|
PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM |
| >PF13091 PLDc_2: PLD-like domain; PDB: 2ZE4_A 2ZE9_A 1BYS_A 1BYR_A 1V0T_A 1V0U_A 1V0V_A 1V0S_A 1V0R_A 1V0W_A | Back alignment and domain information |
|---|
Probab=99.34 E-value=5.7e-12 Score=117.21 Aligned_cols=126 Identities=21% Similarity=0.345 Sum_probs=80.7
Q ss_pred HHHHHHhccceEEEeeccccCCcccccccccCCCCCccHHHHHHHHHHHHHcCCCcEEEEEecCCCCCCCCCCcchhhhh
Q 004680 437 YVEAIRKAERFIYIENQYFIGGCQLWEKDKHCGCRNLIPIEIALKVVSKIKAKERFAVYILIPMWPEGVPTSDPVQDILH 516 (737)
Q Consensus 437 yl~aI~~A~~~IyIEnqYFi~~~~~w~~~~~~~~~n~i~~~la~~ia~~~~~g~~v~V~IvlP~~p~g~~~~~~~~~i~~ 516 (737)
.+++|++|+++|+|.++||... .+..+|..+.++| ++|+|++....+. .....
T Consensus 1 l~~~i~~A~~~i~i~~~~~~~~------------------~i~~~l~~~~~~g--v~v~ii~~~~~~~-------~~~~~ 53 (126)
T PF13091_consen 1 LIDLIKSAQKSIWIASPYITDP------------------DIIKALLDAAKRG--VKVRIIVDSNQDD-------SEAIN 53 (126)
T ss_dssp HHHHHHT-SSEEEEEESSS-SC------------------HHHHHHHHHHHTT---EEEEEEECGGGH-------HCCCS
T ss_pred CHHHHhccCCEEEEEEEecCcH------------------HHHHHHHHHHHCC--CeEEEEECCCccc-------cchhh
Confidence 3689999999999999999432 4567777776777 9999999964210 00000
Q ss_pred hHHHhHHHHHHHHHHHHHhcCCCCCCcCceEEeeccchhhhccCCcccCCCCCCCCchhHHhhhccccceeeeeeEEEEe
Q 004680 517 WTRETMAMMYKLIGEAIQESGQVGHPRDFLNFFCLATREEKKSNGEFVPPYSPHPMTQYWNAQMHRRFMVYVHSKLMIVD 596 (737)
Q Consensus 517 ~~~~t~~~~~~~~~~~L~~~gv~~~p~~yl~~~~l~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~iyvHSK~mIVD 596 (737)
.. . ...+.+.+...|+++ + .++|+|++|+|
T Consensus 54 ~~--~----~~~~~~~~~~~~i~v----------------------~----------------------~~~H~K~~i~d 83 (126)
T PF13091_consen 54 LA--S----LKELRELLKNAGIEV----------------------R----------------------NRLHAKFYIID 83 (126)
T ss_dssp HH--H----HHHHHHHHHHTTHCE----------------------E----------------------S-B--EEEEET
T ss_pred hH--H----HHHHHhhhccceEEE----------------------e----------------------cCCCcceEEec
Confidence 00 1 122444557777653 0 26899999999
Q ss_pred ceEEEEeccCCCccccCCCCCcceEEEEecCCCCCcchhhHHHHHHHHHH
Q 004680 597 DVYLLIGSANINQRSMDGQRDTEIAIGCYQLPKNDDQNSEDISAYRLSLW 646 (737)
Q Consensus 597 D~~~~IGSaNin~RS~~~~~DsEi~v~i~d~~~~~~~~~~~~~~lR~~Lw 646 (737)
|++++|||+|++.+|+. ++.|+++.+.++.. .+.+...-.++|
T Consensus 84 ~~~~iiGS~N~t~~~~~--~n~E~~~~~~~~~~-----~~~~~~~F~~~W 126 (126)
T PF13091_consen 84 DKVAIIGSANLTSSSFR--RNYELGVIIDDPEL-----VKELIREFDQMW 126 (126)
T ss_dssp TTEEEEES--CSCCCSC--TSEEEEEEEECHHH-----HHHHHHHTHH-H
T ss_pred CccEEEcCCCCCcchhc--CCcceEEEEECHHH-----HHHHHHHHhccC
Confidence 99999999999999995 55999999988753 234444446666
|
... |
| >cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.1e-12 Score=123.51 Aligned_cols=76 Identities=18% Similarity=0.273 Sum_probs=65.4
Q ss_pred ccCCCCcEEEEEECCE----------------------------EEeecc---CCCCCeEeEEEEEEcCCCc--eEEEEE
Q 004680 7 FVNGKPTYVTIKIDNK----------------------------KVAKTS---HEHDRVWNQTFQILCAHPA--DATITI 53 (737)
Q Consensus 7 ~~~~~DPYv~v~l~~~----------------------------~~~rTk---~~~nP~WnE~F~~~~~~~~--~l~~~V 53 (737)
..|.+||||+|.+... .+.||+ ++.||+|||+|.|.+.+.. .|.|+|
T Consensus 45 ~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~WnE~F~f~v~~~~~~~L~i~V 124 (153)
T cd08676 45 VNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNPVWNETFRFEVEDVSNDQLHLDI 124 (153)
T ss_pred CCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCCccccEEEEEeccCCCCEEEEEE
Confidence 3578999999999531 246787 8999999999999998753 999999
Q ss_pred EecCCCcccEEEEeehhhhhcccccccceEec
Q 004680 54 TLKTKCSVLGKIHIQALQILNEASLISGFFPL 85 (737)
Q Consensus 54 ~D~d~d~~iG~~~ipl~~l~~~g~~~d~w~~L 85 (737)
+|++ +++||++.|+++++. . ..++.||+|
T Consensus 125 ~D~d-d~~IG~v~i~l~~l~-~-~~~d~W~~L 153 (153)
T cd08676 125 WDHD-DDFLGCVNIPLKDLP-S-CGLDSWFKL 153 (153)
T ss_pred EecC-CCeEEEEEEEHHHhC-C-CCCCCeEeC
Confidence 9999 999999999999998 4 457999987
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy |
| >cd04041 C2A_fungal C2 domain first repeat; fungal group | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.8e-12 Score=117.35 Aligned_cols=74 Identities=16% Similarity=0.296 Sum_probs=63.1
Q ss_pred CCCCcEEEEEECC--EEEeecc---CCCCCeEeEEEEEEcCCC----c-eEEEEEEecCC---CcccEEEEeehhhhhcc
Q 004680 9 NGKPTYVTIKIDN--KKVAKTS---HEHDRVWNQTFQILCAHP----A-DATITITLKTK---CSVLGKIHIQALQILNE 75 (737)
Q Consensus 9 ~~~DPYv~v~l~~--~~~~rTk---~~~nP~WnE~F~~~~~~~----~-~l~~~V~D~d~---d~~iG~~~ipl~~l~~~ 75 (737)
+++||||+|.+.+ +.+.||+ ++.||+|||+|.|.+... . .|.|+|+|+|. |++||++++++++|.
T Consensus 21 ~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~~~~dd~lG~~~i~l~~l~-- 98 (111)
T cd04041 21 GSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDRFTADDRLGRVEIDLKELI-- 98 (111)
T ss_pred CCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCCCCCCCcceEEEEEHHHHh--
Confidence 7899999999943 4557888 899999999999987653 3 89999999997 899999999999999
Q ss_pred cccccceEecc
Q 004680 76 ASLISGFFPLE 86 (737)
Q Consensus 76 g~~~d~w~~L~ 86 (737)
.-..|+++.
T Consensus 99 --~~~~~~~~~ 107 (111)
T cd04041 99 --EDRNWMGRR 107 (111)
T ss_pred --cCCCCCccc
Confidence 334788875
|
C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan |
| >cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.32 E-value=5.3e-12 Score=119.67 Aligned_cols=97 Identities=11% Similarity=0.117 Sum_probs=76.3
Q ss_pred ccCCCCcEEEEEECCEEEeecc---CCCCCeEeEEEEEEcCC----------Cc-eEEEEEEecCC---CcccEEEEe-e
Q 004680 7 FVNGKPTYVTIKIDNKKVAKTS---HEHDRVWNQTFQILCAH----------PA-DATITITLKTK---CSVLGKIHI-Q 68 (737)
Q Consensus 7 ~~~~~DPYv~v~l~~~~~~rTk---~~~nP~WnE~F~~~~~~----------~~-~l~~~V~D~d~---d~~iG~~~i-p 68 (737)
..|++||||+|.+++.. .||+ ++.||+|||+|.|.+.+ .. .|.|+|+|+|. |++||++.+ |
T Consensus 18 ~~g~~dpyv~v~~~~~~-~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~d~~~~d~~iG~~~i~~ 96 (135)
T cd04017 18 KSGLSDPFARVSFLNQS-QETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQDSVGKDEFLGRSVAKP 96 (135)
T ss_pred CCCCCCCEEEEEECCee-eEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeCcCCCCCccceEEEeee
Confidence 35789999999998754 4787 89999999999987432 12 68999999986 899999997 6
Q ss_pred hhhhhc--ccccccceEecccCCCCCCCCccEEEEEeccCC
Q 004680 69 ALQILN--EASLISGFFPLEMENGKPNPDLRLRFMLWFKPA 107 (737)
Q Consensus 69 l~~l~~--~g~~~d~w~~L~~~~~k~~~~~~l~l~l~f~~~ 107 (737)
+..+.. .+.....|++|. ..++ ..|+|.+.+.+.++
T Consensus 97 ~~~~~~~~~~~~~~~W~~L~-~~~~--~~Geil~~~~~~~~ 134 (135)
T cd04017 97 LVKLDLEEDFPPKLQWFPIY-KGGQ--SAGELLAAFELIEV 134 (135)
T ss_pred eeecccCCCCCCCceEEEee-cCCC--chhheeEEeEEEEe
Confidence 655542 256789999996 3444 36799999998765
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme |
| >cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.5e-12 Score=118.95 Aligned_cols=79 Identities=15% Similarity=0.185 Sum_probs=67.0
Q ss_pred ccCCCCcEEEEEE--CCEEEeecc---CCCCCeEeEEEEEEcCCC----c-eEEEEEEecCC---CcccEEEEeehhhhh
Q 004680 7 FVNGKPTYVTIKI--DNKKVAKTS---HEHDRVWNQTFQILCAHP----A-DATITITLKTK---CSVLGKIHIQALQIL 73 (737)
Q Consensus 7 ~~~~~DPYv~v~l--~~~~~~rTk---~~~nP~WnE~F~~~~~~~----~-~l~~~V~D~d~---d~~iG~~~ipl~~l~ 73 (737)
..+++||||+|.+ ++....||+ ++.||+|||+|.|.+... . .|.|+|+|+|. +++||++.|+|+++.
T Consensus 33 ~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d~d~~~~~~~iG~~~i~l~~l~ 112 (125)
T cd08386 33 FSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLDYDRFSRNDPIGEVSLPLNKVD 112 (125)
T ss_pred CCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEEeCCCCcCCcEeeEEEEeccccc
Confidence 3578999999999 334456887 999999999999974222 2 69999999986 899999999999999
Q ss_pred cccccccceEecc
Q 004680 74 NEASLISGFFPLE 86 (737)
Q Consensus 74 ~~g~~~d~w~~L~ 86 (737)
.++..+.|++|.
T Consensus 113 -~~~~~~~W~~l~ 124 (125)
T cd08386 113 -LTEEQTFWKDLK 124 (125)
T ss_pred -CCCCcceEEecC
Confidence 898999999985
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves |
| >cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3 | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.6e-12 Score=119.74 Aligned_cols=77 Identities=18% Similarity=0.208 Sum_probs=64.8
Q ss_pred CCCCcEEEEEECC----EEEeecc---CCCCCeEeEEEEEEcCCC---c-eEEEEEEecCC---CcccEEEEeehhhhhc
Q 004680 9 NGKPTYVTIKIDN----KKVAKTS---HEHDRVWNQTFQILCAHP---A-DATITITLKTK---CSVLGKIHIQALQILN 74 (737)
Q Consensus 9 ~~~DPYv~v~l~~----~~~~rTk---~~~nP~WnE~F~~~~~~~---~-~l~~~V~D~d~---d~~iG~~~ipl~~l~~ 74 (737)
|++||||++.+.. ....||+ ++.||+|||+|.|.+... . .|.|+|+|.+. +++||++.|||+++.-
T Consensus 35 g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~V~~~~~~~~~~~lG~~~i~L~~~~~ 114 (128)
T cd08392 35 KKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVSVWHSRTLKRRVFLGEVLIPLADWDF 114 (128)
T ss_pred CCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHHhCCcEEEEEEEeCCCCcCcceEEEEEEEcCCccc
Confidence 7899999999941 2234777 899999999999998664 3 99999999986 8999999999999962
Q ss_pred c--cccccceEec
Q 004680 75 E--ASLISGFFPL 85 (737)
Q Consensus 75 ~--g~~~d~w~~L 85 (737)
. +.....||+|
T Consensus 115 ~~~~~~~~~W~~l 127 (128)
T cd08392 115 EDTDSQRFLWYPL 127 (128)
T ss_pred CCCCccccceEEC
Confidence 3 4578999998
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids |
| >cd04048 C2A_Copine C2 domain first repeat in Copine | Back alignment and domain information |
|---|
Probab=99.30 E-value=5.6e-12 Score=116.93 Aligned_cols=80 Identities=11% Similarity=0.136 Sum_probs=67.5
Q ss_pred ccCCCCcEEEEEECCEE------Eeecc---CCCCCeEeEEEEEEcCCC-c-eEEEEEEecC-----C--CcccEEEEee
Q 004680 7 FVNGKPTYVTIKIDNKK------VAKTS---HEHDRVWNQTFQILCAHP-A-DATITITLKT-----K--CSVLGKIHIQ 68 (737)
Q Consensus 7 ~~~~~DPYv~v~l~~~~------~~rTk---~~~nP~WnE~F~~~~~~~-~-~l~~~V~D~d-----~--d~~iG~~~ip 68 (737)
..|++||||+|.+.+.. +.||+ ++.||+|||+|.|.+... . .|.|+|+|+| . +++||++.++
T Consensus 17 ~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~~~~~d~iG~~~i~ 96 (120)
T cd04048 17 VLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKDLSDHDFLGEAECT 96 (120)
T ss_pred CCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCCCCCCcEEEEEEEE
Confidence 35789999999996643 57887 999999999999985433 3 8999999987 4 8999999999
Q ss_pred hhhhhcccccccceEeccc
Q 004680 69 ALQILNEASLISGFFPLEM 87 (737)
Q Consensus 69 l~~l~~~g~~~d~w~~L~~ 87 (737)
+++|. .+.....|++|..
T Consensus 97 l~~l~-~~~~~~~~~~l~~ 114 (120)
T cd04048 97 LGEIV-SSPGQKLTLPLKG 114 (120)
T ss_pred HHHHh-cCCCcEEEEEccC
Confidence 99999 7777888999954
|
There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma |
| >cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC) | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.2e-11 Score=115.54 Aligned_cols=94 Identities=19% Similarity=0.223 Sum_probs=78.0
Q ss_pred cCCCCcEEEEEECC-----EEEeecc---CC-CCCeEeEEEEEEcCCCc--eEEEEEEecCC--CcccEEEEeehhhhhc
Q 004680 8 VNGKPTYVTIKIDN-----KKVAKTS---HE-HDRVWNQTFQILCAHPA--DATITITLKTK--CSVLGKIHIQALQILN 74 (737)
Q Consensus 8 ~~~~DPYv~v~l~~-----~~~~rTk---~~-~nP~WnE~F~~~~~~~~--~l~~~V~D~d~--d~~iG~~~ipl~~l~~ 74 (737)
.+.+||||+|.+.+ ....||+ ++ .||+|||+|.|.+..+. .|.|+|+|.+. +++||.+.++++++.
T Consensus 22 ~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~~~~~~~~iG~~~~~l~~l~- 100 (128)
T cd00275 22 GSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDEDSGDDDFLGQACLPLDSLR- 100 (128)
T ss_pred CCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeCCCCCCcEeEEEEEEhHHhc-
Confidence 56889999999942 2335776 44 59999999999987665 79999999987 999999999999998
Q ss_pred ccccccceEecccCCCCCCCCccEEEEEecc
Q 004680 75 EASLISGFFPLEMENGKPNPDLRLRFMLWFK 105 (737)
Q Consensus 75 ~g~~~d~w~~L~~~~~k~~~~~~l~l~l~f~ 105 (737)
.|. .|++|.+.+|++...|.|.+.++++
T Consensus 101 ~g~---~~~~l~~~~~~~~~~~~l~v~~~~~ 128 (128)
T cd00275 101 QGY---RHVPLLDSKGEPLELSTLFVHIDIT 128 (128)
T ss_pred Cce---EEEEecCCCCCCCcceeEEEEEEEC
Confidence 665 7999998888766678999988763
|
PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking |
| >cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11 | Back alignment and domain information |
|---|
Probab=99.29 E-value=6.3e-12 Score=118.13 Aligned_cols=79 Identities=11% Similarity=0.138 Sum_probs=64.3
Q ss_pred cCCCCcEEEEEEC--CEEEeecc---CCCCCeEeEEEEEE-cCCC---c-eEEEEEEecCC---CcccEEEEeehhhhhc
Q 004680 8 VNGKPTYVTIKID--NKKVAKTS---HEHDRVWNQTFQIL-CAHP---A-DATITITLKTK---CSVLGKIHIQALQILN 74 (737)
Q Consensus 8 ~~~~DPYv~v~l~--~~~~~rTk---~~~nP~WnE~F~~~-~~~~---~-~l~~~V~D~d~---d~~iG~~~ipl~~l~~ 74 (737)
+|++||||+|.+. +++..||+ ++.||+|||+|.|. +... . .|.|+|+|+|. +++||++.|||+++.-
T Consensus 35 ~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~d~d~~~~d~~lG~~~i~L~~l~~ 114 (128)
T cd08388 35 SGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVLSFDRYSRDDVIGEVVCPLAGADL 114 (128)
T ss_pred CCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEEEEcCCCCCCceeEEEEEeccccCC
Confidence 3788999999994 34456888 99999999999995 4322 2 79999999986 9999999999999962
Q ss_pred -ccccccceEecc
Q 004680 75 -EASLISGFFPLE 86 (737)
Q Consensus 75 -~g~~~d~w~~L~ 86 (737)
.+.+...|++|.
T Consensus 115 ~~~~~~~~~~~~~ 127 (128)
T cd08388 115 LNEGELLVSREIQ 127 (128)
T ss_pred CCCceEEEEEecc
Confidence 246789999884
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence |
| >cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Probab=99.29 E-value=7.2e-12 Score=116.69 Aligned_cols=77 Identities=21% Similarity=0.301 Sum_probs=63.2
Q ss_pred cCCCCcEEEEEECC----EEEeecc---CCCCCeEeEEEEEEcCCC----c-eEEEEEEecCC---CcccEEEEeehhhh
Q 004680 8 VNGKPTYVTIKIDN----KKVAKTS---HEHDRVWNQTFQILCAHP----A-DATITITLKTK---CSVLGKIHIQALQI 72 (737)
Q Consensus 8 ~~~~DPYv~v~l~~----~~~~rTk---~~~nP~WnE~F~~~~~~~----~-~l~~~V~D~d~---d~~iG~~~ipl~~l 72 (737)
.+++||||+|.+.+ ..+.||+ ++.||+|||+|.|++.+. . .|.|+|+|.+. +++||++.++|++.
T Consensus 34 ~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~~ 113 (125)
T cd04031 34 GSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTVWDYDRDGENDFLGEVVIDLADA 113 (125)
T ss_pred CCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCCCEEEEEEEeCCCCCCCcEeeEEEEecccc
Confidence 47899999999964 3456887 999999999999997552 3 89999999986 89999999999984
Q ss_pred hcccccccceEecc
Q 004680 73 LNEASLISGFFPLE 86 (737)
Q Consensus 73 ~~~g~~~d~w~~L~ 86 (737)
. ......|++|.
T Consensus 114 ~--~~~~~~W~~L~ 125 (125)
T cd04031 114 L--LDDEPHWYPLQ 125 (125)
T ss_pred c--ccCCcceEECc
Confidence 4 23346899983
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as |
| >cd08680 C2_Kibra C2 domain found in Human protein Kibra | Back alignment and domain information |
|---|
Probab=99.28 E-value=6.7e-12 Score=117.18 Aligned_cols=78 Identities=13% Similarity=0.260 Sum_probs=65.2
Q ss_pred cCCCCcEEEEEE--CC---EEEeecc---CCCCCeEeEEEEEEcCCC---c-eEEEEEEecCC---CcccEEEEeehhhh
Q 004680 8 VNGKPTYVTIKI--DN---KKVAKTS---HEHDRVWNQTFQILCAHP---A-DATITITLKTK---CSVLGKIHIQALQI 72 (737)
Q Consensus 8 ~~~~DPYv~v~l--~~---~~~~rTk---~~~nP~WnE~F~~~~~~~---~-~l~~~V~D~d~---d~~iG~~~ipl~~l 72 (737)
.|.+||||++.| ++ ....||+ ++.||+|||+|.|++.+. . .|.|+|+|.|. +++||++.|+|.++
T Consensus 32 ~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~~ 111 (124)
T cd08680 32 PENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQVDVCSVGPDQQEECLGGAQISLADF 111 (124)
T ss_pred CCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhhcCEEEEEEEeCCCCCceeEEEEEEEEhhhc
Confidence 578999999999 22 2356888 999999999999998764 2 99999999987 99999999999999
Q ss_pred hcccccccceEec
Q 004680 73 LNEASLISGFFPL 85 (737)
Q Consensus 73 ~~~g~~~d~w~~L 85 (737)
...+.....|++|
T Consensus 112 ~~~~~~~~~Wy~l 124 (124)
T cd08680 112 ESSEEMSTKWYNL 124 (124)
T ss_pred cCCCccccccccC
Confidence 6355567889876
|
Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom |
| >cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.2e-11 Score=117.74 Aligned_cols=80 Identities=9% Similarity=0.170 Sum_probs=69.9
Q ss_pred ccCCCCcEEEEEECC---EEEeecc---CCCCCeEeEEEEEEcCCC----------------c-eEEEEEEecCC---Cc
Q 004680 7 FVNGKPTYVTIKIDN---KKVAKTS---HEHDRVWNQTFQILCAHP----------------A-DATITITLKTK---CS 60 (737)
Q Consensus 7 ~~~~~DPYv~v~l~~---~~~~rTk---~~~nP~WnE~F~~~~~~~----------------~-~l~~~V~D~d~---d~ 60 (737)
..|++||||+|.++. ..+.||+ ++.||+|||+|.|.+... . .|.|+|+|++. ++
T Consensus 15 ~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~d~~~~~~~~ 94 (137)
T cd08675 15 SNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSELRVELWHASMVSGDD 94 (137)
T ss_pred cCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccEEEEEEEcCCcCcCCc
Confidence 467899999999984 4556888 899999999999998764 3 89999999986 99
Q ss_pred ccEEEEeehhhhhcccccccceEeccc
Q 004680 61 VLGKIHIQALQILNEASLISGFFPLEM 87 (737)
Q Consensus 61 ~iG~~~ipl~~l~~~g~~~d~w~~L~~ 87 (737)
+||++.|+|+++. .....+.|++|..
T Consensus 95 ~IG~~~i~l~~l~-~~~~~~~W~~L~~ 120 (137)
T cd08675 95 FLGEVRIPLQGLQ-QAGSHQAWYFLQP 120 (137)
T ss_pred EEEEEEEehhhcc-CCCcccceEecCC
Confidence 9999999999998 6778899999974
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin |
| >cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1) | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.1e-11 Score=115.82 Aligned_cols=95 Identities=20% Similarity=0.265 Sum_probs=71.7
Q ss_pred cCCCCcEEEEEECC--E----------EEeecc---CCCCCeE-eEEEEEEcCCCceEEEEEEecCC------CcccEEE
Q 004680 8 VNGKPTYVTIKIDN--K----------KVAKTS---HEHDRVW-NQTFQILCAHPADATITITLKTK------CSVLGKI 65 (737)
Q Consensus 8 ~~~~DPYv~v~l~~--~----------~~~rTk---~~~nP~W-nE~F~~~~~~~~~l~~~V~D~d~------d~~iG~~ 65 (737)
.|++||||+|.+.. + ...||+ +++||+| ||+|.|.+.....|.|+|+|++. +++||++
T Consensus 18 fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~~~~~L~v~V~D~~~~~~~~~~d~lG~~ 97 (137)
T cd08691 18 FFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGLPTDVLEIEVKDKFAKSRPIIRRFLGKL 97 (137)
T ss_pred CCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcCCCCEEEEEEEecCCCCCccCCceEEEE
Confidence 48999999999943 2 245777 9999999 99999998543499999999764 5999999
Q ss_pred Eeehhhhhcc--cccccceEecccCCCCCCCCccEEEEE
Q 004680 66 HIQALQILNE--ASLISGFFPLEMENGKPNPDLRLRFML 102 (737)
Q Consensus 66 ~ipl~~l~~~--g~~~d~w~~L~~~~~k~~~~~~l~l~l 102 (737)
.|||++|... +.+...|++|........-.|+|.+.+
T Consensus 98 ~i~l~~l~~~~~~~~~~~~~~l~k~~~~s~v~G~~~l~~ 136 (137)
T cd08691 98 SIPVQRLLERHAIGDQELSYTLGRRTPTDHVSGQLTFRF 136 (137)
T ss_pred EEEHHHhcccccCCceEEEEECCcCCCCCcEEEEEEEEe
Confidence 9999999842 234788999864333222345666554
|
NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C |
| >cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins | Back alignment and domain information |
|---|
Probab=99.27 E-value=8.2e-12 Score=116.71 Aligned_cols=78 Identities=15% Similarity=0.234 Sum_probs=66.6
Q ss_pred cCCCCcEEEEEECC----EEEeecc---CCCCCeEeEEEEEEcCCC---c-eEEEEEEecCC-----CcccEEEEeehhh
Q 004680 8 VNGKPTYVTIKIDN----KKVAKTS---HEHDRVWNQTFQILCAHP---A-DATITITLKTK-----CSVLGKIHIQALQ 71 (737)
Q Consensus 8 ~~~~DPYv~v~l~~----~~~~rTk---~~~nP~WnE~F~~~~~~~---~-~l~~~V~D~d~-----d~~iG~~~ipl~~ 71 (737)
.+++||||+|.+.. ....||+ ++.||+|||+|.|.+... . .|.|+|+|++. +++||++.|+|.+
T Consensus 34 ~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v~~~~~~~~~~~~~iG~~~i~l~~ 113 (127)
T cd04030 34 SDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAVKNSKSFLSREKKLLGQVLIDLSD 113 (127)
T ss_pred CCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHhcCCEEEEEEEECCcccCCCCceEEEEEEeccc
Confidence 47899999999953 3456887 899999999999998544 2 89999999862 8999999999999
Q ss_pred hhcccccccceEecc
Q 004680 72 ILNEASLISGFFPLE 86 (737)
Q Consensus 72 l~~~g~~~d~w~~L~ 86 (737)
+. .++..+.|++|.
T Consensus 114 l~-~~~~~~~W~~L~ 127 (127)
T cd04030 114 LD-LSKGFTQWYDLT 127 (127)
T ss_pred cc-ccCCccceEECc
Confidence 98 788899999984
|
KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1 |
| >cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.27 E-value=7.6e-12 Score=116.20 Aligned_cols=78 Identities=19% Similarity=0.262 Sum_probs=66.4
Q ss_pred ccCCCCcEEEEEEC--CE--EEeecc---CCCCCeEeEEEEEEcCCC---c-eEEEEEEecCC---CcccEEEEeehhhh
Q 004680 7 FVNGKPTYVTIKID--NK--KVAKTS---HEHDRVWNQTFQILCAHP---A-DATITITLKTK---CSVLGKIHIQALQI 72 (737)
Q Consensus 7 ~~~~~DPYv~v~l~--~~--~~~rTk---~~~nP~WnE~F~~~~~~~---~-~l~~~V~D~d~---d~~iG~~~ipl~~l 72 (737)
..+++||||+|.+. +. ...||+ ++.||+|||+|.|.+... . .|.|+|+|++. +++||++.++|+++
T Consensus 32 ~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~l 111 (123)
T cd08521 32 KKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLSVWHHDRFGRNTFLGEVEIPLDSW 111 (123)
T ss_pred CCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEEEEeCCCCcCCceeeEEEEecccc
Confidence 35789999999983 22 346777 899999999999998653 3 89999999986 89999999999999
Q ss_pred hcccccccceEec
Q 004680 73 LNEASLISGFFPL 85 (737)
Q Consensus 73 ~~~g~~~d~w~~L 85 (737)
. .+...+.|++|
T Consensus 112 ~-~~~~~~~w~~l 123 (123)
T cd08521 112 D-LDSQQSEWYPL 123 (123)
T ss_pred c-ccCCCccEEEC
Confidence 8 78889999987
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into |
| >cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.5e-11 Score=111.27 Aligned_cols=62 Identities=27% Similarity=0.351 Sum_probs=52.4
Q ss_pred CCCCcEEEEEECC----EEEeecc---CCCCCeEeEEEEEEcCCCceEEEEEEec-------CC---CcccEEEEeehh
Q 004680 9 NGKPTYVTIKIDN----KKVAKTS---HEHDRVWNQTFQILCAHPADATITITLK-------TK---CSVLGKIHIQAL 70 (737)
Q Consensus 9 ~~~DPYv~v~l~~----~~~~rTk---~~~nP~WnE~F~~~~~~~~~l~~~V~D~-------d~---d~~iG~~~ipl~ 70 (737)
+.+||||+|.++. ..++||| +|+||+|||+|.|.+.+...|.|+|+|. |. |++||.++|.|+
T Consensus 13 ~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~s~~L~~~v~d~~~~~~~~d~~~~d~~~G~g~i~Ld 91 (118)
T cd08686 13 QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEGSQTLRILCYEKCYSKVKLDGEGTDAIMGKGQIQLD 91 (118)
T ss_pred CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCCCCEEEEEEEEcccccccccccCcccEEEEEEEEEC
Confidence 6789999999963 3568999 9999999999999997533999999997 33 999988888764
|
The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr |
| >cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.7e-11 Score=114.21 Aligned_cols=79 Identities=20% Similarity=0.343 Sum_probs=68.8
Q ss_pred ccCCCCcEEEEEECCEEEeecc----CCCCCeEeEEEEEEcCCC----c-eEEEEEEecCC---CcccEEEEeehhhhhc
Q 004680 7 FVNGKPTYVTIKIDNKKVAKTS----HEHDRVWNQTFQILCAHP----A-DATITITLKTK---CSVLGKIHIQALQILN 74 (737)
Q Consensus 7 ~~~~~DPYv~v~l~~~~~~rTk----~~~nP~WnE~F~~~~~~~----~-~l~~~V~D~d~---d~~iG~~~ipl~~l~~ 74 (737)
..+++||||+|.+++... +|+ ++.||+|||+|.|.+.+. . .|.|.|+|++. +++||++.|+++++.
T Consensus 18 ~~~~~dpyv~v~~~~~~~-~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~d~~iG~~~i~l~~l~- 95 (124)
T cd04049 18 FLGKIDPYVIIQCRTQER-KSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDNFSDDDFIGEATIHLKGLF- 95 (124)
T ss_pred CCCCcCceEEEEECCEee-eeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECccCCCCCeEEEEEEEhHHhh-
Confidence 347899999999987654 666 489999999999999887 4 89999999986 999999999999999
Q ss_pred ccccccceEeccc
Q 004680 75 EASLISGFFPLEM 87 (737)
Q Consensus 75 ~g~~~d~w~~L~~ 87 (737)
.+...+.|++|..
T Consensus 96 ~~~~~~~~~~l~p 108 (124)
T cd04049 96 EEGVEPGTAELVP 108 (124)
T ss_pred hCCCCcCceEeec
Confidence 7778899999963
|
In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai |
| >cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17 | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.2e-11 Score=114.88 Aligned_cols=79 Identities=10% Similarity=0.153 Sum_probs=67.7
Q ss_pred ccCCCCcEEEEEE--CCEEEeecc---CCCCCeEeEEEEEEcCCC---c-eEEEEEEecCC---CcccEEEEeehhhhhc
Q 004680 7 FVNGKPTYVTIKI--DNKKVAKTS---HEHDRVWNQTFQILCAHP---A-DATITITLKTK---CSVLGKIHIQALQILN 74 (737)
Q Consensus 7 ~~~~~DPYv~v~l--~~~~~~rTk---~~~nP~WnE~F~~~~~~~---~-~l~~~V~D~d~---d~~iG~~~ipl~~l~~ 74 (737)
..+++||||+|.+ ++....||+ ++.||+|||+|.|.+... . .|.|+|+|++. +++||++.|+|+++.
T Consensus 32 ~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~~~~~~~~iG~~~i~L~~l~- 110 (123)
T cd08390 32 DVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSVYDVDRFSRHCIIGHVLFPLKDLD- 110 (123)
T ss_pred CCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEEEECCcCCCCcEEEEEEEecccee-
Confidence 3578899999999 344556887 999999999999998654 2 79999999986 899999999999999
Q ss_pred ccccccceEecc
Q 004680 75 EASLISGFFPLE 86 (737)
Q Consensus 75 ~g~~~d~w~~L~ 86 (737)
.....+.|++|.
T Consensus 111 ~~~~~~~w~~L~ 122 (123)
T cd08390 111 LVKGGVVWRDLE 122 (123)
T ss_pred cCCCceEEEeCC
Confidence 777889999985
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat |
| >cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16 | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.4e-11 Score=115.21 Aligned_cols=79 Identities=16% Similarity=0.159 Sum_probs=66.4
Q ss_pred ccCCCCcEEEEEE--CCEEEeecc--CCCCCeEeEEEEEE-cCCC---c-eEEEEEEecCC---CcccEEEEeehhhhhc
Q 004680 7 FVNGKPTYVTIKI--DNKKVAKTS--HEHDRVWNQTFQIL-CAHP---A-DATITITLKTK---CSVLGKIHIQALQILN 74 (737)
Q Consensus 7 ~~~~~DPYv~v~l--~~~~~~rTk--~~~nP~WnE~F~~~-~~~~---~-~l~~~V~D~d~---d~~iG~~~ipl~~l~~ 74 (737)
..|.+||||++.+ .++...||| +..||+|||+|.|+ +... . .|.|+|+|++. +++||++.|||+.+.
T Consensus 33 ~~~~~d~yVk~~llp~~~~~~kTkv~~~~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~l~- 111 (124)
T cd08389 33 RGGASSWQVHLVLLPSKKQRAKTKVQRGPNPVFNETFTFSRVEPEELNNMALRFRLYGVERMRKERLIGEKVVPLSQLN- 111 (124)
T ss_pred cCCCCCcEEEEEEccCCcceeecccccCCCCcccCEEEECCCCHHHhccCEEEEEEEECCCcccCceEEEEEEeccccC-
Confidence 3578899999888 334456888 44999999999998 5443 2 79999999986 999999999999998
Q ss_pred ccccccceEecc
Q 004680 75 EASLISGFFPLE 86 (737)
Q Consensus 75 ~g~~~d~w~~L~ 86 (737)
.+.....|++|.
T Consensus 112 ~~~~~~~w~~L~ 123 (124)
T cd08389 112 LEGETTVWLTLE 123 (124)
T ss_pred CCCCceEEEeCC
Confidence 888999999985
|
Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle |
| >cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP) | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.8e-11 Score=116.06 Aligned_cols=67 Identities=22% Similarity=0.431 Sum_probs=60.7
Q ss_pred CCCCcEEEEEECCEEEeecc---CCCCCeEeEEEEEEcCCCc-eEEEEEEecCC---CcccEEEEeehhhhhcccc
Q 004680 9 NGKPTYVTIKIDNKKVAKTS---HEHDRVWNQTFQILCAHPA-DATITITLKTK---CSVLGKIHIQALQILNEAS 77 (737)
Q Consensus 9 ~~~DPYv~v~l~~~~~~rTk---~~~nP~WnE~F~~~~~~~~-~l~~~V~D~d~---d~~iG~~~ipl~~l~~~g~ 77 (737)
+++||||+|.++++. .||+ ++.||+|||+|.|.+.++. .|.|+|+|+|. |++||++.+++..+. ...
T Consensus 20 ~~sDPYV~v~~g~~~-~kT~vvk~t~nP~WnE~f~f~i~~~~~~l~~~V~D~d~~~~dd~iG~a~i~l~~l~-~~~ 93 (145)
T cd04038 20 TSSDPYVVLTLGNQK-VKTRVIKKNLNPVWNEELTLSVPNPMAPLKLEVFDKDTFSKDDSMGEAEIDLEPLV-EAA 93 (145)
T ss_pred CCcCcEEEEEECCEE-EEeeeEcCCCCCeecccEEEEecCCCCEEEEEEEECCCCCCCCEEEEEEEEHHHhh-hhh
Confidence 689999999998764 5888 9999999999999998888 99999999996 899999999999998 443
|
ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i |
| >PF13091 PLDc_2: PLD-like domain; PDB: 2ZE4_A 2ZE9_A 1BYS_A 1BYR_A 1V0T_A 1V0U_A 1V0V_A 1V0S_A 1V0R_A 1V0W_A | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.1e-10 Score=108.60 Aligned_cols=124 Identities=19% Similarity=0.325 Sum_probs=85.5
Q ss_pred HHHHHHccccEEEEEEeecCCceEEeeCCchhhccchHHHHHHHHHHHHHcCCeEEEEEeCCCCCc-ccccccccccccc
Q 004680 167 VYKAIEGAKHLIYIAGWSLNPKMVLVRDSQTEIAHARGVQLGELLKHKAEEGVAVRIMLWDDETSL-PIIKNKGVMRTHD 245 (737)
Q Consensus 167 l~~aI~~Ak~~I~I~~w~~~~~~~L~r~~~~~~~~~~~~~l~~lL~~kA~rGV~VriLvwD~~~s~-~~~~~~g~~~~~~ 245 (737)
+.++|++|+++|+|+.+.|. ...|.+.|..++++||+|+|++ +..... .... ....
T Consensus 1 l~~~i~~A~~~i~i~~~~~~-----------------~~~i~~~l~~~~~~gv~v~ii~-~~~~~~~~~~~-----~~~~ 57 (126)
T PF13091_consen 1 LIDLIKSAQKSIWIASPYIT-----------------DPDIIKALLDAAKRGVKVRIIV-DSNQDDSEAIN-----LASL 57 (126)
T ss_dssp HHHHHHT-SSEEEEEESSS------------------SCHHHHHHHHHHHTT-EEEEEE-ECGGGHHCCCS-----HHHH
T ss_pred CHHHHhccCCEEEEEEEecC-----------------cHHHHHHHHHHHHCCCeEEEEE-CCCccccchhh-----hHHH
Confidence 57899999999999988762 1257888888999999999998 552211 0000 0011
Q ss_pred HHHHHHHhcCCcEEEEcCCCCCCCCccccCccceEEecCCCcCcccccceEEEEccccCCCCCcCCCCCcccccCCCCcc
Q 004680 246 EDAFAYFKHTKVICKLCPRLHHKFPTLFAHHQKTITVDARAQDSIFDREIMSFVGGLDLCDGRYDTEKHSLFQTLNSESH 325 (737)
Q Consensus 246 ~~~~~~l~~~gv~v~~~~r~~~~~~~~~~hHqK~vVVD~~~~~~~~~~~~vAfvGG~nL~~~r~Dt~~H~l~~~l~~~~~ 325 (737)
....+.++..|+++. .+.|.|++|+|++ ++++|+.|++...|.
T Consensus 58 ~~~~~~~~~~~i~v~------------~~~H~K~~i~d~~----------~~iiGS~N~t~~~~~--------------- 100 (126)
T PF13091_consen 58 KELRELLKNAGIEVR------------NRLHAKFYIIDDK----------VAIIGSANLTSSSFR--------------- 100 (126)
T ss_dssp HHHHHHHHHTTHCEE------------S-B--EEEEETTT----------EEEEES--CSCCCSC---------------
T ss_pred HHHHhhhccceEEEe------------cCCCcceEEecCc----------cEEEcCCCCCcchhc---------------
Confidence 234445578888875 3689999999998 999999999986441
Q ss_pred cCccccccccCcccCCCCCCCCceeccceeeCHH-HHHHHHHHHHHh
Q 004680 326 CFDFYQINIAGASLHKGGPREPWHDVHACITGEA-AWDVLTNFEQRW 371 (737)
Q Consensus 326 ~~d~~~~~~~g~~~~~~~~~~pWhDv~~~v~Gpa-v~dl~~~F~~rW 371 (737)
..++..+.+++|. +.++.+.|.+.|
T Consensus 101 ---------------------~n~E~~~~~~~~~~~~~~~~~F~~~W 126 (126)
T PF13091_consen 101 ---------------------RNYELGVIIDDPELVKELIREFDQMW 126 (126)
T ss_dssp ---------------------TSEEEEEEEECHHHHHHHHHHTHH-H
T ss_pred ---------------------CCcceEEEEECHHHHHHHHHHHhccC
Confidence 2368899999995 899999999989
|
... |
| >cd04032 C2_Perforin C2 domain of Perforin | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.1e-11 Score=113.03 Aligned_cols=65 Identities=14% Similarity=0.240 Sum_probs=56.8
Q ss_pred cCCCCcEEEEEECCEEEeecc---CCCCCeEeEEEEEEcCCC--c-eEEEEEEecCC---CcccEEEEeehhhhh
Q 004680 8 VNGKPTYVTIKIDNKKVAKTS---HEHDRVWNQTFQILCAHP--A-DATITITLKTK---CSVLGKIHIQALQIL 73 (737)
Q Consensus 8 ~~~~DPYv~v~l~~~~~~rTk---~~~nP~WnE~F~~~~~~~--~-~l~~~V~D~d~---d~~iG~~~ipl~~l~ 73 (737)
.+++||||+|.++++ +.||+ ++.||+|||+|.|..... . .|.|+|+|+|. |++||++.++|....
T Consensus 45 ~g~~DPYVkV~~~~~-~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~~s~dd~IG~~~i~l~~~~ 118 (127)
T cd04032 45 FTSTDGYVKVFFGGQ-EKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRDNGWDDDLLGTCSVVPEAGV 118 (127)
T ss_pred CCCCCeEEEEEECCc-cccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCCCCCCCCeeEEEEEEecCCc
Confidence 478899999999887 56998 899999999999985433 4 99999999996 999999999999665
|
Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few |
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.8e-11 Score=151.43 Aligned_cols=95 Identities=20% Similarity=0.324 Sum_probs=81.1
Q ss_pred cCCCCcEEEEEECCEEEeecc---CCCCCeEeEEEEEEcCCCc---eEEEEEEecCC--CcccEEEEeehhhhhcccccc
Q 004680 8 VNGKPTYVTIKIDNKKVAKTS---HEHDRVWNQTFQILCAHPA---DATITITLKTK--CSVLGKIHIQALQILNEASLI 79 (737)
Q Consensus 8 ~~~~DPYv~v~l~~~~~~rTk---~~~nP~WnE~F~~~~~~~~---~l~~~V~D~d~--d~~iG~~~ipl~~l~~~g~~~ 79 (737)
.|++||||.|.+++....||| ++.||+|||+|+|.+.++. .|+|+|||+|. ++.||.+.|++.++. .++.+
T Consensus 1996 ~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~f~kd~~G~~~i~l~~vv-~~~~~ 2074 (2102)
T PLN03200 1996 MGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNTFGKSSLGKVTIQIDRVV-MEGTY 2074 (2102)
T ss_pred cCCCCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCccCCCCCceEEEEHHHHh-cCcee
Confidence 378999999999965444888 9999999999998877765 79999999998 889999999999999 89999
Q ss_pred cceEecccCCCCCCCCcc---EEEEEeccC
Q 004680 80 SGFFPLEMENGKPNPDLR---LRFMLWFKP 106 (737)
Q Consensus 80 d~w~~L~~~~~k~~~~~~---l~l~l~f~~ 106 (737)
+.||+|.+ +|++ .|+ |.+.+++.+
T Consensus 2075 ~~~~~L~~-~~~k--~G~~~~~~~e~~w~~ 2101 (2102)
T PLN03200 2075 SGEYSLNP-ESNK--DGSSRTLEIEFQWSN 2101 (2102)
T ss_pred eeeeecCc-cccc--CCCcceEEEEEEecC
Confidence 99999984 3432 355 888888765
|
|
| >cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4 | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.7e-11 Score=114.92 Aligned_cols=83 Identities=13% Similarity=0.127 Sum_probs=67.6
Q ss_pred cCCCCcEEEEEEC--CEE--Eeecc---CCCCCeEeEEEEEEcCCC---c-eEEEEEEecCC---CcccEEEEeehhhhh
Q 004680 8 VNGKPTYVTIKID--NKK--VAKTS---HEHDRVWNQTFQILCAHP---A-DATITITLKTK---CSVLGKIHIQALQIL 73 (737)
Q Consensus 8 ~~~~DPYv~v~l~--~~~--~~rTk---~~~nP~WnE~F~~~~~~~---~-~l~~~V~D~d~---d~~iG~~~ipl~~l~ 73 (737)
.|++||||+|.+. ++. ..||+ ++.||+|||+|.|.+... . .|.|+|+|+|. +++||++.|++.. .
T Consensus 33 ~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~d~d~~~~~~~iG~~~~~~~~-~ 111 (136)
T cd08404 33 SGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLVLDSDRVTKNEVIGRLVLGPKA-S 111 (136)
T ss_pred CCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHhCCCEEEEEEEECCCCCCCccEEEEEECCcC-C
Confidence 4789999999993 333 24666 899999999999998643 2 79999999986 9999999999998 3
Q ss_pred cccccccceEecccCCCCCC
Q 004680 74 NEASLISGFFPLEMENGKPN 93 (737)
Q Consensus 74 ~~g~~~d~w~~L~~~~~k~~ 93 (737)
+...+.|++|.+..|++.
T Consensus 112 --~~~~~~w~~l~~~~~~~i 129 (136)
T cd08404 112 --GSGGHHWKEVCNPPRRQI 129 (136)
T ss_pred --CchHHHHHHHHhCCCCee
Confidence 667899999987656653
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s |
| >cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma | Back alignment and domain information |
|---|
Probab=99.18 E-value=5.8e-11 Score=111.77 Aligned_cols=79 Identities=18% Similarity=0.307 Sum_probs=67.9
Q ss_pred cCCCCcEEEEEECC----EEEeecc---CCCCCeEeEEEEEEcCCC--c-eEEEEEEecCC---CcccEEEEeehhhhhc
Q 004680 8 VNGKPTYVTIKIDN----KKVAKTS---HEHDRVWNQTFQILCAHP--A-DATITITLKTK---CSVLGKIHIQALQILN 74 (737)
Q Consensus 8 ~~~~DPYv~v~l~~----~~~~rTk---~~~nP~WnE~F~~~~~~~--~-~l~~~V~D~d~---d~~iG~~~ipl~~l~~ 74 (737)
.+.+||||+|.+.+ ..+.||+ ++.||+|||+|.|.+... . .|.|+|+|++. +++||++.++|+++.
T Consensus 31 ~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~~~~~~~~iG~~~~~l~~l~- 109 (131)
T cd04026 31 NGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDWDRTTRNDFMGSLSFGVSELI- 109 (131)
T ss_pred CCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEECCCCCCcceeEEEEEeHHHhC-
Confidence 46789999999963 4567888 899999999999998764 3 89999999986 899999999999998
Q ss_pred ccccccceEecccC
Q 004680 75 EASLISGFFPLEME 88 (737)
Q Consensus 75 ~g~~~d~w~~L~~~ 88 (737)
.. ..+.|++|.+.
T Consensus 110 ~~-~~~~w~~L~~~ 122 (131)
T cd04026 110 KM-PVDGWYKLLNQ 122 (131)
T ss_pred cC-ccCceEECcCc
Confidence 44 78999999764
|
A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd |
| >cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4 | Back alignment and domain information |
|---|
Probab=99.16 E-value=5.4e-11 Score=116.38 Aligned_cols=78 Identities=18% Similarity=0.173 Sum_probs=65.1
Q ss_pred cCCCCcEEEEEEC----CEEEeecc---CCCCCeEeEEEEEEcCCC----c-eEEEEEEecCC---CcccEEEEeehhhh
Q 004680 8 VNGKPTYVTIKID----NKKVAKTS---HEHDRVWNQTFQILCAHP----A-DATITITLKTK---CSVLGKIHIQALQI 72 (737)
Q Consensus 8 ~~~~DPYv~v~l~----~~~~~rTk---~~~nP~WnE~F~~~~~~~----~-~l~~~V~D~d~---d~~iG~~~ipl~~l 72 (737)
.+++||||+|.+. +..+.||+ ++.||+|||+|.|.+.+. . .|.|+|+|+|. +++||++.|++.++
T Consensus 45 ~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~d~d~~~~d~~lG~v~i~l~~~ 124 (162)
T cd04020 45 GGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVWDHDKLSSNDFLGGVRLGLGTG 124 (162)
T ss_pred CCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEEeCCCCCCCceEEEEEEeCCcc
Confidence 5789999999983 34456888 899999999999985432 2 79999999986 99999999999999
Q ss_pred hcccccccceEecc
Q 004680 73 LNEASLISGFFPLE 86 (737)
Q Consensus 73 ~~~g~~~d~w~~L~ 86 (737)
. .-...+.|++|.
T Consensus 125 ~-~~~~~~~w~~~~ 137 (162)
T cd04020 125 K-SYGQAVDWMDST 137 (162)
T ss_pred c-cCCCccccccCC
Confidence 8 555678998875
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin |
| >cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13 | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.5e-11 Score=115.36 Aligned_cols=81 Identities=12% Similarity=0.178 Sum_probs=66.3
Q ss_pred CCCCcEEEEEECC--EE--Eeecc---CCCCCeEeEEEEEEcCCCc----eEEEEEEecCC---CcccEEEEeehhhhhc
Q 004680 9 NGKPTYVTIKIDN--KK--VAKTS---HEHDRVWNQTFQILCAHPA----DATITITLKTK---CSVLGKIHIQALQILN 74 (737)
Q Consensus 9 ~~~DPYv~v~l~~--~~--~~rTk---~~~nP~WnE~F~~~~~~~~----~l~~~V~D~d~---d~~iG~~~ipl~~l~~ 74 (737)
+++||||+|.+.. ++ ..||+ ++.||+|||+|.|.+++.. .|.|+|+|+|. +++||++.|++..
T Consensus 36 ~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~~~V~d~d~~~~~d~iG~v~lg~~~--- 112 (138)
T cd08407 36 LGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSELLAASSVELEVLNQDSPGQSLPLGRCSLGLHT--- 112 (138)
T ss_pred CCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHHHhCccEEEEEEEeCCCCcCcceeceEEecCcC---
Confidence 5589999999943 23 23666 8999999999999997742 89999999997 9999999999974
Q ss_pred ccccccceEecccCCCCC
Q 004680 75 EASLISGFFPLEMENGKP 92 (737)
Q Consensus 75 ~g~~~d~w~~L~~~~~k~ 92 (737)
.|...+-|..++..-+++
T Consensus 113 ~g~~~~hW~~ml~~p~~~ 130 (138)
T cd08407 113 SGTERQHWEEMLDNPRRQ 130 (138)
T ss_pred CCcHHHHHHHHHhCCCCc
Confidence 577888998887644554
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy |
| >PRK11263 cardiolipin synthase 2; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.4e-10 Score=126.36 Aligned_cols=148 Identities=16% Similarity=0.225 Sum_probs=98.8
Q ss_pred hHHHHHHHHHHHhccceEEEeeccccCCcccccccccCCCCCccHHHHHHHHHHHHHcCCCcEEEEEecCCCCCCCCCCc
Q 004680 431 RSIHEAYVEAIRKAERFIYIENQYFIGGCQLWEKDKHCGCRNLIPIEIALKVVSKIKAKERFAVYILIPMWPEGVPTSDP 510 (737)
Q Consensus 431 ~sI~~ayl~aI~~A~~~IyIEnqYFi~~~~~w~~~~~~~~~n~i~~~la~~ia~~~~~g~~v~V~IvlP~~p~g~~~~~~ 510 (737)
.+...+++++|++||++|+||+.||.++. ++.++..+|.+|.++| |+|+|+++.. |...
T Consensus 17 ~e~~~~l~~~I~~Ak~~I~i~~yi~~~d~--------------~g~~l~~aL~~aa~rG--V~Vril~D~~--gs~~--- 75 (411)
T PRK11263 17 EQYYPRVFEAIAAAQEEILLETFILFEDK--------------VGKQLHAALLAAAQRG--VKVEVLVDGY--GSPD--- 75 (411)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEEEEecCc--------------hHHHHHHHHHHHHHCC--CEEEEEEECC--CCCC---
Confidence 67999999999999999999998887653 3568899999998888 9999999965 2110
Q ss_pred chhhhhhHHHhHHHHHHHHHHHHHhcCCCCCCcCceEEeeccchhhhccCCcccCCCCCCCCchhHHhhhccccceeeee
Q 004680 511 VQDILHWTRETMAMMYKLIGEAIQESGQVGHPRDFLNFFCLATREEKKSNGEFVPPYSPHPMTQYWNAQMHRRFMVYVHS 590 (737)
Q Consensus 511 ~~~i~~~~~~t~~~~~~~~~~~L~~~gv~~~p~~yl~~~~l~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~iyvHS 590 (737)
+ ...+.+.|.++|++++ +| .|.. +-.+. ..+ .....|.
T Consensus 76 ---~-----------~~~~~~~L~~aGv~v~------~~--------------~p~~-~~~~~------~~~-~~~R~Hr 113 (411)
T PRK11263 76 ---L-----------SDEFVNELTAAGVRFR------YF--------------DPRP-RLLGM------RTN-LFRRMHR 113 (411)
T ss_pred ---C-----------CHHHHHHHHHCCeEEE------Ee--------------CCcc-ccccc------ccc-cccCCcc
Confidence 0 0235688999999752 12 1100 00000 000 0125899
Q ss_pred eEEEEeceEEEEeccCCCccccC--CC-CCcceEEEEecCCCCCcchhhHHHHHHHHHHH
Q 004680 591 KLMIVDDVYLLIGSANINQRSMD--GQ-RDTEIAIGCYQLPKNDDQNSEDISAYRLSLWY 647 (737)
Q Consensus 591 K~mIVDD~~~~IGSaNin~RS~~--~~-~DsEi~v~i~d~~~~~~~~~~~~~~lR~~Lw~ 647 (737)
|++|||+++++|||.|+....+. +. .-.++++.+..|. ..+++.+..+.|.
T Consensus 114 KiiVIDg~~a~vGg~N~~~~~~~~~g~~~w~D~~v~i~Gp~------V~~l~~~f~~~w~ 167 (411)
T PRK11263 114 KIVVIDGRIAFVGGINYSADHLSDYGPEAKQDYAVEVEGPV------VADIHQFELEALP 167 (411)
T ss_pred eEEEEcCCEEEEcCeEchHhhccccCCCCceEEEEEEECHH------HHHHHHHHHHHHh
Confidence 99999999999999999654432 11 0145566666654 3455555566664
|
|
| >KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.15 E-value=7.1e-11 Score=132.07 Aligned_cols=102 Identities=16% Similarity=0.114 Sum_probs=83.6
Q ss_pred ccCCCCcEEEEEEC--CEEEeecc---CCCCCeEeEEEEEEcCCCc----eEEEEEEecCC---CcccEEEEeehhhhhc
Q 004680 7 FVNGKPTYVTIKID--NKKVAKTS---HEHDRVWNQTFQILCAHPA----DATITITLKTK---CSVLGKIHIQALQILN 74 (737)
Q Consensus 7 ~~~~~DPYv~v~l~--~~~~~rTk---~~~nP~WnE~F~~~~~~~~----~l~~~V~D~d~---d~~iG~~~ipl~~l~~ 74 (737)
..|++||||++.+- .+...+|+ +|+||+|||+|.|.+++.. .|.|+|+|.|+ +++||++.+||..+.
T Consensus 184 ~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l~~~~L~l~V~~~drfsr~~~iGev~~~l~~~~- 262 (421)
T KOG1028|consen 184 RGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYEELSNRVLHLSVYDFDRFSRHDFIGEVILPLGEVD- 262 (421)
T ss_pred CCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHHHhccCEEEEEEEecCCcccccEEEEEEecCcccc-
Confidence 35789999999993 33446787 9999999999999987662 99999999998 999999999999998
Q ss_pred ccccccceEecccCCCCCC-CCccEEEEEeccCCCc
Q 004680 75 EASLISGFFPLEMENGKPN-PDLRLRFMLWFKPAAY 109 (737)
Q Consensus 75 ~g~~~d~w~~L~~~~~k~~-~~~~l~l~l~f~~~~~ 109 (737)
.......|.+|....-... ..|+|.++|+|.|+..
T Consensus 263 ~~~~~~~w~~l~~~~~~~~~~~gel~~sL~Y~p~~g 298 (421)
T KOG1028|consen 263 LLSTTLFWKDLQPSSTDSEELAGELLLSLCYLPTAG 298 (421)
T ss_pred ccccceeeeccccccCCcccccceEEEEEEeecCCC
Confidence 6666889999975322222 3369999999999744
|
|
| >cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12 | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.5e-11 Score=114.24 Aligned_cols=83 Identities=16% Similarity=0.210 Sum_probs=66.3
Q ss_pred ccCCCCcEEEEEEC--CEEE--eecc---CCCCCeEeEEEEEEcCCC---c-eEEEEEEecCC---CcccEEEEeehhhh
Q 004680 7 FVNGKPTYVTIKID--NKKV--AKTS---HEHDRVWNQTFQILCAHP---A-DATITITLKTK---CSVLGKIHIQALQI 72 (737)
Q Consensus 7 ~~~~~DPYv~v~l~--~~~~--~rTk---~~~nP~WnE~F~~~~~~~---~-~l~~~V~D~d~---d~~iG~~~ipl~~l 72 (737)
..|++||||+|.|. ++++ .||+ ++.||+|||+|.|.+... . .|.|+|+|+|. +++||++.|+..
T Consensus 32 ~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~V~~~d~~~~~~~iG~v~lg~~-- 109 (136)
T cd08406 32 GKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVTVAESTEDGKTPNVGHVIIGPA-- 109 (136)
T ss_pred CCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHhCCcEEEEEEEeCCCCCCCCeeEEEEECCC--
Confidence 35789999999993 3332 3665 899999999999998654 2 89999999996 999999999776
Q ss_pred hcccccccceEecccCCCCC
Q 004680 73 LNEASLISGFFPLEMENGKP 92 (737)
Q Consensus 73 ~~~g~~~d~w~~L~~~~~k~ 92 (737)
. .|+..+.|..++..-+++
T Consensus 110 ~-~g~~~~hW~~ml~~~~~~ 128 (136)
T cd08406 110 A-SGMGLSHWNQMLASLRKP 128 (136)
T ss_pred C-CChhHHHHHHHHHCCCCe
Confidence 3 577788998888644543
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl |
| >cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.4e-11 Score=113.64 Aligned_cols=82 Identities=15% Similarity=0.147 Sum_probs=67.3
Q ss_pred cCCCCcEEEEEECC----EEEeecc---CCCCCeEeEEEEEEcCCC---c-eEEEEEEecCC---CcccEEEEeehhhhh
Q 004680 8 VNGKPTYVTIKIDN----KKVAKTS---HEHDRVWNQTFQILCAHP---A-DATITITLKTK---CSVLGKIHIQALQIL 73 (737)
Q Consensus 8 ~~~~DPYv~v~l~~----~~~~rTk---~~~nP~WnE~F~~~~~~~---~-~l~~~V~D~d~---d~~iG~~~ipl~~l~ 73 (737)
.|++||||+|.+.+ ....||+ ++.||+|||+|.|.+... . .|.|+|+|+|. +++||++.|++..
T Consensus 31 ~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~-- 108 (133)
T cd08384 31 NGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEITVWDKDIGKSNDYIGGLQLGINA-- 108 (133)
T ss_pred CCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEEEEeCCCCCCccEEEEEEEecCC--
Confidence 47899999999942 2345777 899999999999998764 2 79999999986 8999999999984
Q ss_pred cccccccceEecccCCCCC
Q 004680 74 NEASLISGFFPLEMENGKP 92 (737)
Q Consensus 74 ~~g~~~d~w~~L~~~~~k~ 92 (737)
.|+..+.|++++..-+++
T Consensus 109 -~~~~~~~W~~~l~~~~~~ 126 (133)
T cd08384 109 -KGERLRHWLDCLKNPDKK 126 (133)
T ss_pred -CCchHHHHHHHHhCCCCC
Confidence 466788999998644443
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai |
| >PLN02223 phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.3e-10 Score=130.36 Aligned_cols=91 Identities=21% Similarity=0.269 Sum_probs=77.9
Q ss_pred CCCcEEEEEECCE----EEeecc---CCCCCeEeEEEEEEcCCCc--eEEEEEEecCC---CcccEEEEeehhhhhcccc
Q 004680 10 GKPTYVTIKIDNK----KVAKTS---HEHDRVWNQTFQILCAHPA--DATITITLKTK---CSVLGKIHIQALQILNEAS 77 (737)
Q Consensus 10 ~~DPYv~v~l~~~----~~~rTk---~~~nP~WnE~F~~~~~~~~--~l~~~V~D~d~---d~~iG~~~ipl~~l~~~g~ 77 (737)
..||||+|.+.|. ...||+ |+.||+|||+|.|.+..+. -|+|+|+|+|. +++||+++|||+.|. .|.
T Consensus 434 ~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~D~D~~~~ddfiGQ~~LPv~~Lr-~Gy 512 (537)
T PLN02223 434 KPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVYDYEVSTADAFCGQTCLPVSELI-EGI 512 (537)
T ss_pred CCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEEecCCCCCCcEEEEEecchHHhc-CCc
Confidence 4599999999652 223555 8999999999999876665 89999999996 899999999999999 898
Q ss_pred cccceEecccCCCCCCCCccEEEEEec
Q 004680 78 LISGFFPLEMENGKPNPDLRLRFMLWF 104 (737)
Q Consensus 78 ~~d~w~~L~~~~~k~~~~~~l~l~l~f 104 (737)
++++|.+.+|+++...+|.++.+|
T Consensus 513 ---R~VpL~~~~g~~l~~~~Ll~~f~~ 536 (537)
T PLN02223 513 ---RAVPLYDERGKACSSTMLLTRFKW 536 (537)
T ss_pred ---eeEeccCCCcCCCCCceEEEEEEe
Confidence 999999999999877788887765
|
|
| >cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Probab=99.13 E-value=4.5e-11 Score=113.06 Aligned_cols=84 Identities=12% Similarity=0.155 Sum_probs=67.5
Q ss_pred ccCCCCcEEEEEEC--CEE--Eeecc---CCCCCeEeEEEEEEcCCCc----eEEEEEEecCC---CcccEEEEeehhhh
Q 004680 7 FVNGKPTYVTIKID--NKK--VAKTS---HEHDRVWNQTFQILCAHPA----DATITITLKTK---CSVLGKIHIQALQI 72 (737)
Q Consensus 7 ~~~~~DPYv~v~l~--~~~--~~rTk---~~~nP~WnE~F~~~~~~~~----~l~~~V~D~d~---d~~iG~~~ipl~~l 72 (737)
..|++||||+|.+. +++ ..||+ ++.||+|||+|.|.+.... .|.|+|+|+|. +++||++.|++.
T Consensus 31 ~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~v~d~~~~~~~~~IG~~~l~~~-- 108 (134)
T cd08403 31 ITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLIIAVVDYDRVGHNELIGVCRVGPN-- 108 (134)
T ss_pred cCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhCCCEEEEEEEECCCCCCCceeEEEEECCC--
Confidence 35789999999993 332 35776 8999999999999985542 59999999986 999999999987
Q ss_pred hcccccccceEecccCCCCCC
Q 004680 73 LNEASLISGFFPLEMENGKPN 93 (737)
Q Consensus 73 ~~~g~~~d~w~~L~~~~~k~~ 93 (737)
. .++..+.|++++...+++.
T Consensus 109 ~-~~~~~~~w~~~~~~~~~~~ 128 (134)
T cd08403 109 A-DGQGREHWNEMLANPRKPI 128 (134)
T ss_pred C-CCchHHHHHHHHHCCCCee
Confidence 3 5666789999987666653
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind |
| >cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Probab=99.12 E-value=1e-10 Score=110.60 Aligned_cols=67 Identities=10% Similarity=0.081 Sum_probs=57.8
Q ss_pred ccCCCCcEEEEEECC------EEEeecc---CCCCCeEeEEEEEEcCCC-----c-eEEEEEEecCC---CcccEEEEee
Q 004680 7 FVNGKPTYVTIKIDN------KKVAKTS---HEHDRVWNQTFQILCAHP-----A-DATITITLKTK---CSVLGKIHIQ 68 (737)
Q Consensus 7 ~~~~~DPYv~v~l~~------~~~~rTk---~~~nP~WnE~F~~~~~~~-----~-~l~~~V~D~d~---d~~iG~~~ip 68 (737)
..+++||||+|.+.+ ....||+ ++.||+|||+|.|.+... . .|.|+|+|+|. +++||++.|+
T Consensus 33 ~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~~~V~d~d~~~~d~~iG~~~i~ 112 (133)
T cd04009 33 SNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLFTVKDYDLLGSNDFEGEAFLP 112 (133)
T ss_pred CCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEEEEEEEecCCCCCCcEeEEEEEe
Confidence 347899999999953 3456888 999999999999998652 3 89999999986 8999999999
Q ss_pred hhhhh
Q 004680 69 ALQIL 73 (737)
Q Consensus 69 l~~l~ 73 (737)
|++|.
T Consensus 113 l~~l~ 117 (133)
T cd04009 113 LNDIP 117 (133)
T ss_pred HHHCC
Confidence 99998
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s |
| >KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.4e-11 Score=128.37 Aligned_cols=79 Identities=19% Similarity=0.312 Sum_probs=67.8
Q ss_pred cCCCCcEEEEEEC----CEEEeecc---CCCCCeEeEEEEEEcCCCc---eEEEEEEecCC---CcccEEEEeehhhhhc
Q 004680 8 VNGKPTYVTIKID----NKKVAKTS---HEHDRVWNQTFQILCAHPA---DATITITLKTK---CSVLGKIHIQALQILN 74 (737)
Q Consensus 8 ~~~~DPYv~v~l~----~~~~~rTk---~~~nP~WnE~F~~~~~~~~---~l~~~V~D~d~---d~~iG~~~ipl~~l~~ 74 (737)
+|-|||||++++- +....||| .++||+|||+|+|.+.... .|.++|+|.|+ +|+||..++-+++|.
T Consensus 198 NGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWDrTsRNDFMGslSFgisEl~- 276 (683)
T KOG0696|consen 198 NGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWDWDRTSRNDFMGSLSFGISELQ- 276 (683)
T ss_pred CCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccccceeEEEEecccccccccccceecccHHHHh-
Confidence 5889999999992 23334666 8999999999999986664 99999999998 999999999999998
Q ss_pred ccccccceEecccC
Q 004680 75 EASLISGFFPLEME 88 (737)
Q Consensus 75 ~g~~~d~w~~L~~~ 88 (737)
...++.|+.|+..
T Consensus 277 -K~p~~GWyKlLsq 289 (683)
T KOG0696|consen 277 -KAPVDGWYKLLSQ 289 (683)
T ss_pred -hcchhhHHHHhhh
Confidence 5678999999853
|
|
| >COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.4e-10 Score=136.93 Aligned_cols=104 Identities=19% Similarity=0.294 Sum_probs=91.2
Q ss_pred cccCCCCcEEEEEECCEEEeecc---CCCCCeEeEEEEEEcCCCc-eEEEEEEecCC---CcccEEEEeehhhhhccccc
Q 004680 6 VFVNGKPTYVTIKIDNKKVAKTS---HEHDRVWNQTFQILCAHPA-DATITITLKTK---CSVLGKIHIQALQILNEASL 78 (737)
Q Consensus 6 ~~~~~~DPYv~v~l~~~~~~rTk---~~~nP~WnE~F~~~~~~~~-~l~~~V~D~d~---d~~iG~~~ipl~~l~~~g~~ 78 (737)
.+.++.|||+++.+.+...+||| |+.||+|||+|++++.... .|.+.|+|++. |+++|+++|+|..|...+..
T Consensus 454 ~i~~~vDpyit~~~~~r~~gkT~v~~nt~nPvwNEt~Yi~lns~~d~L~LslyD~n~~~sd~vvG~~~l~L~~L~~~~~~ 533 (1227)
T COG5038 454 TINGTVDPYITVTFSDRVIGKTRVKKNTLNPVWNETFYILLNSFTDPLNLSLYDFNSFKSDKVVGSTQLDLALLHQNPVK 533 (1227)
T ss_pred cccCCCCceEEEEeccccCCccceeeccCCccccceEEEEecccCCceeEEEEeccccCCcceeeeEEechHHhhhcccc
Confidence 46789999999999998889999 9999999999999999888 99999999764 99999999999999966666
Q ss_pred ccceEecccCCCCCCCCccEEEEEeccCCCcccc
Q 004680 79 ISGFFPLEMENGKPNPDLRLRFMLWFKPAAYEPT 112 (737)
Q Consensus 79 ~d~w~~L~~~~~k~~~~~~l~l~l~f~~~~~~~~ 112 (737)
.+.-+.++ .+.++ .|+|+..++|+|+.++..
T Consensus 534 ~ne~~e~~-~~~k~--vGrL~yDl~ffp~~e~k~ 564 (1227)
T COG5038 534 KNELYEFL-RNTKN--VGRLTYDLRFFPVIEDKK 564 (1227)
T ss_pred ccceeeee-ccCcc--ceEEEEeeeeecccCCcc
Confidence 67777776 56775 578999999999888643
|
|
| >cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1 | Back alignment and domain information |
|---|
Probab=99.11 E-value=5.4e-11 Score=112.83 Aligned_cols=83 Identities=16% Similarity=0.222 Sum_probs=67.4
Q ss_pred ccCCCCcEEEEEEC--CE--EEeecc---CCCCCeEeEEEEEEcCCCc----eEEEEEEecCC---CcccEEEEeehhhh
Q 004680 7 FVNGKPTYVTIKID--NK--KVAKTS---HEHDRVWNQTFQILCAHPA----DATITITLKTK---CSVLGKIHIQALQI 72 (737)
Q Consensus 7 ~~~~~DPYv~v~l~--~~--~~~rTk---~~~nP~WnE~F~~~~~~~~----~l~~~V~D~d~---d~~iG~~~ipl~~l 72 (737)
..|++||||+|.+. ++ ...||+ ++.||+|||+|.|.+.... .|.|+|+|+|. +++||++.|++..
T Consensus 32 ~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~v~d~~~~~~~~~iG~~~i~~~~- 110 (136)
T cd08402 32 VGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIVTVLDYDRIGKNDPIGKVVLGCNA- 110 (136)
T ss_pred CCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHhCCCEEEEEEEeCCCCCCCceeEEEEECCcc-
Confidence 35789999999994 32 234676 8999999999999986542 79999999986 8999999999974
Q ss_pred hcccccccceEecccCCCCC
Q 004680 73 LNEASLISGFFPLEMENGKP 92 (737)
Q Consensus 73 ~~~g~~~d~w~~L~~~~~k~ 92 (737)
.|..++.|++++...+++
T Consensus 111 --~~~~~~~W~~~~~~~~~~ 128 (136)
T cd08402 111 --TGAELRHWSDMLASPRRP 128 (136)
T ss_pred --CChHHHHHHHHHhCCCCe
Confidence 477889999998654444
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: |
| >cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.6e-10 Score=107.89 Aligned_cols=67 Identities=16% Similarity=0.272 Sum_probs=58.3
Q ss_pred ccCCCCcEEEEEECCEEE-eecc---CCCCCeEeEEEEEEcCCCc--eEEEEEEecCC---CcccEEEEeehhhhh
Q 004680 7 FVNGKPTYVTIKIDNKKV-AKTS---HEHDRVWNQTFQILCAHPA--DATITITLKTK---CSVLGKIHIQALQIL 73 (737)
Q Consensus 7 ~~~~~DPYv~v~l~~~~~-~rTk---~~~nP~WnE~F~~~~~~~~--~l~~~V~D~d~---d~~iG~~~ipl~~l~ 73 (737)
..|++||||+|.+++.+. .||+ ++.||+|||+|.|.+..+. .|.|+|+|+|. +++||++.|++++..
T Consensus 17 ~~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~dd~iG~~~i~l~~~~ 92 (124)
T cd04037 17 PNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLPGNSILKISVMDYDLLGSDDLIGETVIDLEDRF 92 (124)
T ss_pred CCCCCCcEEEEEECCeeccceeeEEECCCCCccceEEEEEecCCCCCEEEEEEEECCCCCCCceeEEEEEeecccc
Confidence 347899999999988654 4665 9999999999999986554 89999999986 899999999999877
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Probab=99.11 E-value=4.9e-11 Score=113.10 Aligned_cols=83 Identities=18% Similarity=0.220 Sum_probs=66.5
Q ss_pred ccCCCCcEEEEEE--CCE--EEeecc---CCCCCeEeEEEEEEcCCC---c-eEEEEEEecCC---CcccEEEEeehhhh
Q 004680 7 FVNGKPTYVTIKI--DNK--KVAKTS---HEHDRVWNQTFQILCAHP---A-DATITITLKTK---CSVLGKIHIQALQI 72 (737)
Q Consensus 7 ~~~~~DPYv~v~l--~~~--~~~rTk---~~~nP~WnE~F~~~~~~~---~-~l~~~V~D~d~---d~~iG~~~ipl~~l 72 (737)
..|++||||+|.+ ++. ...||+ ++.||+|||+|.|.+... . .|.|+|+|+|. +++||++.|++...
T Consensus 32 ~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~v~d~~~~~~~~~lG~~~i~~~~~ 111 (136)
T cd08405 32 INGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERLRETTLIITVMDKDRLSRNDLIGKIYLGWKSG 111 (136)
T ss_pred cCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHHhCCCEEEEEEEECCCCCCCcEeEEEEECCccC
Confidence 3578999999998 332 235777 999999999999987532 3 89999999986 89999999999864
Q ss_pred hcccccccceEecccCCCCC
Q 004680 73 LNEASLISGFFPLEMENGKP 92 (737)
Q Consensus 73 ~~~g~~~d~w~~L~~~~~k~ 92 (737)
|...+.|++++...+++
T Consensus 112 ---~~~~~~w~~~~~~~~~~ 128 (136)
T cd08405 112 ---GLELKHWKDMLSKPRQP 128 (136)
T ss_pred ---CchHHHHHHHHhCCCCc
Confidence 66678999888655554
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves |
| >cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin | Back alignment and domain information |
|---|
Probab=99.09 E-value=9.3e-11 Score=110.41 Aligned_cols=82 Identities=20% Similarity=0.216 Sum_probs=68.9
Q ss_pred cCCCCcEEEEEECC----EEEeecc---CCCCCeEeEEEEEEcCCC---c-eEEEEEEecCC---CcccEEEEeehhhhh
Q 004680 8 VNGKPTYVTIKIDN----KKVAKTS---HEHDRVWNQTFQILCAHP---A-DATITITLKTK---CSVLGKIHIQALQIL 73 (737)
Q Consensus 8 ~~~~DPYv~v~l~~----~~~~rTk---~~~nP~WnE~F~~~~~~~---~-~l~~~V~D~d~---d~~iG~~~ipl~~l~ 73 (737)
.+.+||||+|.+.+ ....||+ ++.||+|||+|.|.+... . .|.|+|+|++. +++||.+.|++++ .
T Consensus 32 ~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~-~ 110 (134)
T cd00276 32 KGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITVVDKDSVGRNEVIGQVVLGPDS-G 110 (134)
T ss_pred CCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEEEEecCCCCCCceeEEEEECCCC-C
Confidence 46889999999953 2345787 899999999999998765 3 89999999985 8999999999998 4
Q ss_pred cccccccceEecccCCCCC
Q 004680 74 NEASLISGFFPLEMENGKP 92 (737)
Q Consensus 74 ~~g~~~d~w~~L~~~~~k~ 92 (737)
+...+.|++|++..+++
T Consensus 111 --~~~~~~W~~l~~~~~~~ 127 (134)
T cd00276 111 --GEELEHWNEMLASPRKP 127 (134)
T ss_pred --CcHHHHHHHHHhCCCCc
Confidence 77789999999765654
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin |
| >cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17 | Back alignment and domain information |
|---|
Probab=99.09 E-value=7.3e-11 Score=111.92 Aligned_cols=85 Identities=19% Similarity=0.237 Sum_probs=65.2
Q ss_pred ccCCCCcEEEEEE-CC-E--EEeecc---CCCCCeEeEEEEEEcCCCc----eEEEEEEecCC---CcccEEEEeehhhh
Q 004680 7 FVNGKPTYVTIKI-DN-K--KVAKTS---HEHDRVWNQTFQILCAHPA----DATITITLKTK---CSVLGKIHIQALQI 72 (737)
Q Consensus 7 ~~~~~DPYv~v~l-~~-~--~~~rTk---~~~nP~WnE~F~~~~~~~~----~l~~~V~D~d~---d~~iG~~~ipl~~l 72 (737)
..|++||||+|.+ .+ + ...||+ ++.||+|||+|.|.+.... .|.|+|+|+|. +++||++.|.....
T Consensus 31 ~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~~V~d~d~~~~~~~iG~~~l~~~~~ 110 (135)
T cd08410 31 MSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELENVSLVFTVYGHNVKSSNDFIGRIVIGQYSS 110 (135)
T ss_pred CCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhCCCEEEEEEEeCCCCCCCcEEEEEEEcCccC
Confidence 3578999999998 22 2 234666 9999999999999985432 69999999986 99999999865433
Q ss_pred hcccccccceEecccCCCCCC
Q 004680 73 LNEASLISGFFPLEMENGKPN 93 (737)
Q Consensus 73 ~~~g~~~d~w~~L~~~~~k~~ 93 (737)
. +...+.|..++...+++.
T Consensus 111 ~--~~~~~~W~~l~~~~~~~~ 129 (135)
T cd08410 111 G--PSETNHWRRMLNSQRTAV 129 (135)
T ss_pred C--chHHHHHHHHHhCCCCEe
Confidence 2 445789999987666653
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta- |
| >KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.07 E-value=1e-10 Score=129.01 Aligned_cols=95 Identities=21% Similarity=0.375 Sum_probs=77.6
Q ss_pred cCCCCcEEEEEECCEEEeecc---CCCCCeEeEEEEEEcCCCc-eEEEEEEecCC--------------CcccEEEEeeh
Q 004680 8 VNGKPTYVTIKIDNKKVAKTS---HEHDRVWNQTFQILCAHPA-DATITITLKTK--------------CSVLGKIHIQA 69 (737)
Q Consensus 8 ~~~~DPYv~v~l~~~~~~rTk---~~~nP~WnE~F~~~~~~~~-~l~~~V~D~d~--------------d~~iG~~~ipl 69 (737)
.|+|||||++.+++.+. ||| ..+||||||.|+|.|.+.. .|.+.|+|.|- |||+|+.-|.+
T Consensus 313 tg~sdpyvt~qv~ktkr-rtrti~~~lnpvw~ekfhfechnstdrikvrvwded~dlksklrqkl~resddflgqtviev 391 (1283)
T KOG1011|consen 313 TGKSDPYVTAQVGKTKR-RTRTIHQELNPVWNEKFHFECHNSTDRIKVRVWDEDNDLKSKLRQKLTRESDDFLGQTVIEV 391 (1283)
T ss_pred CCCCCCcEEEeecccch-hhHhhhhccchhhhhheeeeecCCCceeEEEEecCcccHHHHHHHHhhhcccccccceeEEE
Confidence 58999999999998665 777 8999999999999998888 99999999863 89999999999
Q ss_pred hhhhcccccccceEecccCCCCCC--CCccEEEEEeccC
Q 004680 70 LQILNEASLISGFFPLEMENGKPN--PDLRLRFMLWFKP 106 (737)
Q Consensus 70 ~~l~~~g~~~d~w~~L~~~~~k~~--~~~~l~l~l~f~~ 106 (737)
..|. | ++|.|+.|....-|.. |.-+|||++...-
T Consensus 392 rtls--g-emdvwynlekrtdksavsgairlhisveikg 427 (1283)
T KOG1011|consen 392 RTLS--G-EMDVWYNLEKRTDKSAVSGAIRLHISVEIKG 427 (1283)
T ss_pred Eecc--c-chhhhcchhhccchhhccceEEEEEEEEEcC
Confidence 8764 5 6899999976554544 4456666666543
|
|
| >PRK01642 cls cardiolipin synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.6e-09 Score=123.97 Aligned_cols=152 Identities=18% Similarity=0.177 Sum_probs=109.5
Q ss_pred CceeEEeeccCCCCCCCCCCcCCCCchhHHHHHHHHHHccccEEEEEEeecCCceEEeeCCchhhccchHHHHHHHHHHH
Q 004680 135 NCHVKLYHDAHHSSSFEPPYDLCGSPGKLWEDVYKAIEGAKHLIYIAGWSLNPKMVLVRDSQTEIAHARGVQLGELLKHK 214 (737)
Q Consensus 135 gn~v~ly~dg~~~~~f~p~~~~~~~~~~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~L~r~~~~~~~~~~~~~l~~lL~~k 214 (737)
++.++++.+|.. . ....+.+.+.++|.+||++|+|++--| +. ...+.++|+.|
T Consensus 302 ~~~~qi~~sgP~--~---------~~~~~~~~~~~~I~~A~~~I~I~tpYf------ip----------~~~i~~aL~~A 354 (483)
T PRK01642 302 GHTVQVIASGPG--D---------PEETIHQFLLTAIYSARERLWITTPYF------VP----------DEDLLAALKTA 354 (483)
T ss_pred CceEEEEeCCCC--C---------hhhHHHHHHHHHHHHhccEEEEEcCCc------CC----------CHHHHHHHHHH
Confidence 457888888731 1 023577789999999999999986322 21 34799999999
Q ss_pred HHcCCeEEEEEeCCCCCccccccccccccccHHHHHHHhcCCcEEEEcCCCCCCCCccccCccceEEecCCCcCcccccc
Q 004680 215 AEEGVAVRIMLWDDETSLPIIKNKGVMRTHDEDAFAYFKHTKVICKLCPRLHHKFPTLFAHHQKTITVDARAQDSIFDRE 294 (737)
Q Consensus 215 A~rGV~VriLvwD~~~s~~~~~~~g~~~~~~~~~~~~l~~~gv~v~~~~r~~~~~~~~~~hHqK~vVVD~~~~~~~~~~~ 294 (737)
|+|||+|+||+ +......+... ......+.|...||++..+.. ...|.|++|||++
T Consensus 355 a~rGV~Vril~-p~~~d~~~~~~------~~~~~~~~L~~~Gv~I~~y~~--------~~~HaK~~ivD~~--------- 410 (483)
T PRK01642 355 ALRGVDVRIII-PSKNDSLLVFW------ASRAFFTELLEAGVKIYRYEG--------GLLHTKSVLVDDE--------- 410 (483)
T ss_pred HHcCCEEEEEe-CCCCCcHHHHH------HHHHHHHHHHHcCCEEEEeCC--------CceEeEEEEECCC---------
Confidence 99999999998 66433222110 012344567789999976531 3579999999999
Q ss_pred eEEEEccccCCCCCcCCCCCcccccCCCCcccCccccccccCcccCCCCCCCCceeccceeeCH-HHHHHHHHHHHHhhh
Q 004680 295 IMSFVGGLDLCDGRYDTEKHSLFQTLNSESHCFDFYQINIAGASLHKGGPREPWHDVHACITGE-AAWDVLTNFEQRWTK 373 (737)
Q Consensus 295 ~vAfvGG~nL~~~r~Dt~~H~l~~~l~~~~~~~d~~~~~~~g~~~~~~~~~~pWhDv~~~v~Gp-av~dl~~~F~~rW~~ 373 (737)
++++|+.|+...-+. -=+++.+.+.+| .+.++.+.|.++|..
T Consensus 411 -~~~vGS~N~d~rS~~------------------------------------~N~E~~~~i~d~~~~~~l~~~f~~d~~~ 453 (483)
T PRK01642 411 -LALVGTVNLDMRSFW------------------------------------LNFEITLVIDDTGFAADLAAMQEDYFAR 453 (483)
T ss_pred -EEEeeCCcCCHhHHh------------------------------------hhhcceEEEECHHHHHHHHHHHHHHHHh
Confidence 999999999654221 113677888887 688999999999975
Q ss_pred c
Q 004680 374 Q 374 (737)
Q Consensus 374 ~ 374 (737)
.
T Consensus 454 s 454 (483)
T PRK01642 454 S 454 (483)
T ss_pred C
Confidence 4
|
|
| >PRK05443 polyphosphate kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.3e-09 Score=127.98 Aligned_cols=133 Identities=17% Similarity=0.131 Sum_probs=101.9
Q ss_pred HHHHHHHHHhccc-----eEEEeeccccCCcccccccccCCCCCccHHHHHHHHHHHHHcCCCcEEEEEecCCCCCCCCC
Q 004680 434 HEAYVEAIRKAER-----FIYIENQYFIGGCQLWEKDKHCGCRNLIPIEIALKVVSKIKAKERFAVYILIPMWPEGVPTS 508 (737)
Q Consensus 434 ~~ayl~aI~~A~~-----~IyIEnqYFi~~~~~w~~~~~~~~~n~i~~~la~~ia~~~~~g~~v~V~IvlP~~p~g~~~~ 508 (737)
.+..++.|++|.+ .|.|+-..+..++ .+..+|.+|+++| ++|.|+++..+-
T Consensus 350 F~~~~~~i~~Aa~DP~V~~Ik~tlYr~~~~s-----------------~iv~aL~~Aa~~G--k~V~vlve~kar----- 405 (691)
T PRK05443 350 FDPVVEFLRQAAADPDVLAIKQTLYRTSKDS-----------------PIVDALIEAAENG--KQVTVLVELKAR----- 405 (691)
T ss_pred chHHHHHHHHhccCCCeeEEEEEEEEecCCH-----------------HHHHHHHHHHHcC--CEEEEEEccCcc-----
Confidence 3677899999999 8999875555442 6789999998988 999999997641
Q ss_pred CcchhhhhhHHHhHHHHHHHHHHHHHhcCCCCCCcCceEEeeccchhhhccCCcccCCCCCCCCchhHHhhhccccceee
Q 004680 509 DPVQDILHWTRETMAMMYKLIGEAIQESGQVGHPRDFLNFFCLATREEKKSNGEFVPPYSPHPMTQYWNAQMHRRFMVYV 588 (737)
Q Consensus 509 ~~~~~i~~~~~~t~~~~~~~~~~~L~~~gv~~~p~~yl~~~~l~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~iyv 588 (737)
+..++.. .+++.|+++|+++. | .|.+ ..+
T Consensus 406 -----fde~~n~-------~~~~~L~~aGv~V~-------y------------~~~~--------------------~k~ 434 (691)
T PRK05443 406 -----FDEEANI-------RWARRLEEAGVHVV-------Y------------GVVG--------------------LKT 434 (691)
T ss_pred -----ccHHHHH-------HHHHHHHHcCCEEE-------E------------ccCC--------------------ccc
Confidence 1112222 36789999999751 1 2322 589
Q ss_pred eeeEEEEece-------EEEEeccCCCccccCCCCCcceEEEEecCCCCCcchhhHHHHHHHHHHHH
Q 004680 589 HSKLMIVDDV-------YLLIGSANINQRSMDGQRDTEIAIGCYQLPKNDDQNSEDISAYRLSLWYE 648 (737)
Q Consensus 589 HSK~mIVDD~-------~~~IGSaNin~RS~~~~~DsEi~v~i~d~~~~~~~~~~~~~~lR~~Lw~e 648 (737)
|||+++||++ |+.|||+|+|.||...+ +|+++.+.+++. ...+..+...||..
T Consensus 435 HaK~~lid~~e~~~~~~~~~iGTgN~n~~s~~~y--~D~~l~t~d~~i-----~~d~~~~F~~l~~~ 494 (691)
T PRK05443 435 HAKLALVVRREGGGLRRYVHLGTGNYNPKTARLY--TDLSLLTADPEI-----GEDVTRLFNYLTGY 494 (691)
T ss_pred eeEEEEEEeecCCceeEEEEEcCCCCCcchhhhc--cceeEEEeChHH-----HHHHHHHHHHHhCc
Confidence 9999999999 99999999999999766 999999888774 35566777777653
|
|
| >cd04047 C2B_Copine C2 domain second repeat in Copine | Back alignment and domain information |
|---|
Probab=99.04 E-value=4.5e-10 Score=102.35 Aligned_cols=69 Identities=17% Similarity=0.310 Sum_probs=56.9
Q ss_pred ccCCCCcEEEEEECCE-----EEeecc---CCCCCeEeEEEEEEcCCC-----c-eEEEEEEecCC---CcccEEEEeeh
Q 004680 7 FVNGKPTYVTIKIDNK-----KVAKTS---HEHDRVWNQTFQILCAHP-----A-DATITITLKTK---CSVLGKIHIQA 69 (737)
Q Consensus 7 ~~~~~DPYv~v~l~~~-----~~~rTk---~~~nP~WnE~F~~~~~~~-----~-~l~~~V~D~d~---d~~iG~~~ipl 69 (737)
..+++||||+|.+.+. .+.||+ ++.||+|| +|.|++.+. . .|.|+|+|+|. |++||++.+++
T Consensus 17 ~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~~~~d~~iG~~~~~l 95 (110)
T cd04047 17 FFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDSSGKHDLIGEFETTL 95 (110)
T ss_pred CCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCCCCCCcEEEEEEEEH
Confidence 3578999999998542 356888 89999999 799986421 4 99999999987 89999999999
Q ss_pred hhhhcccc
Q 004680 70 LQILNEAS 77 (737)
Q Consensus 70 ~~l~~~g~ 77 (737)
++|. .++
T Consensus 96 ~~l~-~~~ 102 (110)
T cd04047 96 DELL-KSS 102 (110)
T ss_pred HHHh-cCC
Confidence 9998 443
|
There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom |
| >cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16 | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.7e-10 Score=109.80 Aligned_cols=84 Identities=17% Similarity=0.174 Sum_probs=65.4
Q ss_pred ccCCCCcEEEEEEC---CEE--Eeecc---CCCCCeEeEEEEEEcCCC---c-eEEEEEEecCC---CcccEEEEeehhh
Q 004680 7 FVNGKPTYVTIKID---NKK--VAKTS---HEHDRVWNQTFQILCAHP---A-DATITITLKTK---CSVLGKIHIQALQ 71 (737)
Q Consensus 7 ~~~~~DPYv~v~l~---~~~--~~rTk---~~~nP~WnE~F~~~~~~~---~-~l~~~V~D~d~---d~~iG~~~ipl~~ 71 (737)
..|++||||+|.+. ++. ..||+ ++.||+|||+|.|.+... . .|.|+|+|.|. +++||++.|++..
T Consensus 32 ~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~~~V~~~~~~~~~~~iG~v~l~~~~ 111 (138)
T cd08408 32 MNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQLSEVTLMFSVYNKRKMKRKEMIGWFSLGLNS 111 (138)
T ss_pred cCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHhCccEEEEEEEECCCCCCCcEEEEEEECCcC
Confidence 45789999999993 222 24777 899999999999998754 2 99999999986 9999999999874
Q ss_pred hhcccccccceEecccCCCCC
Q 004680 72 ILNEASLISGFFPLEMENGKP 92 (737)
Q Consensus 72 l~~~g~~~d~w~~L~~~~~k~ 92 (737)
.- ....+.|..++...+++
T Consensus 112 ~~--~~~~~hW~~~l~~~~~~ 130 (138)
T cd08408 112 SG--EEEEEHWNEMKESKGQQ 130 (138)
T ss_pred CC--chHHHHHHHHHhCCCCE
Confidence 32 24567898887644443
|
Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle |
| >PLN02952 phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=99.03 E-value=5.6e-10 Score=127.88 Aligned_cols=90 Identities=18% Similarity=0.229 Sum_probs=75.9
Q ss_pred CCcEEEEEECC----EEEeecc---CCCCCeEeEEEEEEcCCCc--eEEEEEEecCC---CcccEEEEeehhhhhccccc
Q 004680 11 KPTYVTIKIDN----KKVAKTS---HEHDRVWNQTFQILCAHPA--DATITITLKTK---CSVLGKIHIQALQILNEASL 78 (737)
Q Consensus 11 ~DPYv~v~l~~----~~~~rTk---~~~nP~WnE~F~~~~~~~~--~l~~~V~D~d~---d~~iG~~~ipl~~l~~~g~~ 78 (737)
.||||+|.+-| ....||+ |+.||+|||+|.|.+..+. -|+|+|+|+|. ++++|+++|||+.|. .|.
T Consensus 497 ~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V~D~D~~~~ddfiGq~~lPv~~Lr-~Gy- 574 (599)
T PLN02952 497 PDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEVREYDMSEKDDFGGQTCLPVSELR-PGI- 574 (599)
T ss_pred CCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEEEecCCCCCCCeEEEEEcchhHhc-CCc-
Confidence 39999999965 2334777 7799999999998876654 89999999986 899999999999999 898
Q ss_pred ccceEecccCCCCCCCCccEEEEEec
Q 004680 79 ISGFFPLEMENGKPNPDLRLRFMLWF 104 (737)
Q Consensus 79 ~d~w~~L~~~~~k~~~~~~l~l~l~f 104 (737)
+|++|.+.+|++.+...|.+++.|
T Consensus 575 --R~VpL~~~~G~~l~~a~Llv~f~~ 598 (599)
T PLN02952 575 --RSVPLHDKKGEKLKNVRLLMRFIF 598 (599)
T ss_pred --eeEeCcCCCCCCCCCEEEEEEEEe
Confidence 799999999998876677766665
|
|
| >cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus) | Back alignment and domain information |
|---|
Probab=99.00 E-value=4e-10 Score=106.07 Aligned_cols=83 Identities=12% Similarity=0.147 Sum_probs=62.5
Q ss_pred cCCCCcEEEEEE--CCEEE--eecc---CCC-CCeEeEEEEEEcCCCc---eEEEEEEecCC---CcccEEEEeehhhhh
Q 004680 8 VNGKPTYVTIKI--DNKKV--AKTS---HEH-DRVWNQTFQILCAHPA---DATITITLKTK---CSVLGKIHIQALQIL 73 (737)
Q Consensus 8 ~~~~DPYv~v~l--~~~~~--~rTk---~~~-nP~WnE~F~~~~~~~~---~l~~~V~D~d~---d~~iG~~~ipl~~l~ 73 (737)
.+++||||+|.| +++++ .||+ +|. ||+|||+|.|.++... .|.++|+|.|. +++||++.++.++..
T Consensus 32 ~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~v~v~d~~~~~~n~~IG~v~lG~~~~~ 111 (135)
T cd08692 32 PLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGIQFLIKLYSRSSVRRKHFLGQVWISSDSSS 111 (135)
T ss_pred CCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhheeEEEEEEEeCCCCcCCceEEEEEECCccCC
Confidence 356799999999 33333 3555 674 6999999999997654 77778888875 999999999998743
Q ss_pred cccccccceEecccCCCCC
Q 004680 74 NEASLISGFFPLEMENGKP 92 (737)
Q Consensus 74 ~~g~~~d~w~~L~~~~~k~ 92 (737)
+...+.|.+.++.-+++
T Consensus 112 --~~~~~hW~~m~~~pr~~ 128 (135)
T cd08692 112 --SEAVEQWKDTIANPEKV 128 (135)
T ss_pred --chhhhhHHHHHhCCCCe
Confidence 55678998887533443
|
Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho |
| >cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15 | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.3e-10 Score=108.81 Aligned_cols=80 Identities=11% Similarity=0.204 Sum_probs=65.9
Q ss_pred cCCCCcEEEEEECC--EE--Eeecc---CCCCCeEeEEEEEEcCCCc----eEEEEEEecCC---CcccEEEEeehhhhh
Q 004680 8 VNGKPTYVTIKIDN--KK--VAKTS---HEHDRVWNQTFQILCAHPA----DATITITLKTK---CSVLGKIHIQALQIL 73 (737)
Q Consensus 8 ~~~~DPYv~v~l~~--~~--~~rTk---~~~nP~WnE~F~~~~~~~~----~l~~~V~D~d~---d~~iG~~~ipl~~l~ 73 (737)
.+.+||||+|.+.. +. ..||+ ++.||+|||+|.|.+.... .|.|+|+|.+. +++||++.|+.....
T Consensus 32 ~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V~~~~~~~~~~~lG~v~ig~~~~~ 111 (137)
T cd08409 32 HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLSVMQSGGVRKSKLLGRVVLGPFMYA 111 (137)
T ss_pred CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHhCccEEEEEEEeCCCCCCcceEEEEEECCcccC
Confidence 46799999999842 22 23776 8999999999999996542 79999999985 999999999987666
Q ss_pred cccccccceEecccC
Q 004680 74 NEASLISGFFPLEME 88 (737)
Q Consensus 74 ~~g~~~d~w~~L~~~ 88 (737)
.|+..+.|..++..
T Consensus 112 -~~~~~~hW~~~~~~ 125 (137)
T cd08409 112 -RGKELEHWNDMLSK 125 (137)
T ss_pred -CChHHHHHHHHHhC
Confidence 78888999988753
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id |
| >cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Probab=99.00 E-value=7.7e-10 Score=102.96 Aligned_cols=76 Identities=11% Similarity=0.094 Sum_probs=61.4
Q ss_pred cCCCCcEEEEEEC----CEEEeecc---CCCCCeEeEEEEEE-cCC--C-c-eEEEEEEecCC--CcccEEEEeehhhhh
Q 004680 8 VNGKPTYVTIKID----NKKVAKTS---HEHDRVWNQTFQIL-CAH--P-A-DATITITLKTK--CSVLGKIHIQALQIL 73 (737)
Q Consensus 8 ~~~~DPYv~v~l~----~~~~~rTk---~~~nP~WnE~F~~~-~~~--~-~-~l~~~V~D~d~--d~~iG~~~ipl~~l~ 73 (737)
.+++||||++.+. +..+.||+ ++.||+|||+|.|. +.. . . .|.|+|+|++. +++||.+.++|++|.
T Consensus 33 ~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v~d~~~~~~~~iG~~~i~l~~l~ 112 (123)
T cd04035 33 NGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLVLDEDRFGNDFLGETRIPLKKLK 112 (123)
T ss_pred CCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEEEEcCCcCCeeEEEEEEEcccCC
Confidence 4789999999983 23457888 89999999999996 332 1 3 89999999986 999999999999999
Q ss_pred cccccccceEe
Q 004680 74 NEASLISGFFP 84 (737)
Q Consensus 74 ~~g~~~d~w~~ 84 (737)
.++..+.|+.
T Consensus 113 -~~~~~~~~~~ 122 (123)
T cd04035 113 -PNQTKQFNIC 122 (123)
T ss_pred -CCcceEeecc
Confidence 6666666654
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain |
| >PLN02230 phosphoinositide phospholipase C 4 | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.4e-09 Score=124.38 Aligned_cols=91 Identities=19% Similarity=0.237 Sum_probs=78.0
Q ss_pred CCCcEEEEEECC----EEEeecc---CCCCCeEeEEEEEEcCCCc--eEEEEEEecCC---CcccEEEEeehhhhhcccc
Q 004680 10 GKPTYVTIKIDN----KKVAKTS---HEHDRVWNQTFQILCAHPA--DATITITLKTK---CSVLGKIHIQALQILNEAS 77 (737)
Q Consensus 10 ~~DPYv~v~l~~----~~~~rTk---~~~nP~WnE~F~~~~~~~~--~l~~~V~D~d~---d~~iG~~~ipl~~l~~~g~ 77 (737)
..||||+|.+-| ....||+ |+.||+|||+|.|++.-+. -|+|.|+|+|. +++||+.+|||+.|. .|.
T Consensus 495 ~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V~d~d~~~~ddfiGQ~~lPv~~Lr-~Gy 573 (598)
T PLN02230 495 PPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEVHEHDINEKDDFGGQTCLPVSEIR-QGI 573 (598)
T ss_pred CCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEEEECCCCCCCCEEEEEEcchHHhh-Ccc
Confidence 359999999954 2224776 8999999999998865554 99999999986 999999999999999 898
Q ss_pred cccceEecccCCCCCCCCccEEEEEec
Q 004680 78 LISGFFPLEMENGKPNPDLRLRFMLWF 104 (737)
Q Consensus 78 ~~d~w~~L~~~~~k~~~~~~l~l~l~f 104 (737)
+.++|.+.+|.+....+|.++.+|
T Consensus 574 ---R~V~L~~~~G~~l~~~~Ll~~f~~ 597 (598)
T PLN02230 574 ---HAVPLFNRKGVKYSSTRLLMRFEF 597 (598)
T ss_pred ---ceEeccCCCcCCCCCCeeEEEEEe
Confidence 899999999998877788888776
|
|
| >PLN02222 phosphoinositide phospholipase C 2 | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.1e-09 Score=122.94 Aligned_cols=92 Identities=15% Similarity=0.244 Sum_probs=78.5
Q ss_pred CCCcEEEEEECC----EEEeecc---CCCCCeEeEEEEEEcCCCc--eEEEEEEecCC---CcccEEEEeehhhhhcccc
Q 004680 10 GKPTYVTIKIDN----KKVAKTS---HEHDRVWNQTFQILCAHPA--DATITITLKTK---CSVLGKIHIQALQILNEAS 77 (737)
Q Consensus 10 ~~DPYv~v~l~~----~~~~rTk---~~~nP~WnE~F~~~~~~~~--~l~~~V~D~d~---d~~iG~~~ipl~~l~~~g~ 77 (737)
..||||+|.+.| ....||| ++.||+|||+|.|.+..+. -|+|+|+|+|. +++||+++|||+.|. .|.
T Consensus 478 ~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V~d~D~~~~ddfigq~~lPv~~Lr-~Gy 556 (581)
T PLN02222 478 PPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEVHEYDMSEKDDFGGQTCLPVWELS-QGI 556 (581)
T ss_pred CCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEEEECCCCCCCcEEEEEEcchhhhh-Ccc
Confidence 359999999954 2335788 6799999999999865554 99999999986 899999999999999 898
Q ss_pred cccceEecccCCCCCCCCccEEEEEecc
Q 004680 78 LISGFFPLEMENGKPNPDLRLRFMLWFK 105 (737)
Q Consensus 78 ~~d~w~~L~~~~~k~~~~~~l~l~l~f~ 105 (737)
+.++|.+.+|.+...++|.+++.|.
T Consensus 557 ---R~V~L~~~~g~~l~~a~Lfv~~~~~ 581 (581)
T PLN02222 557 ---RAFPLHSRKGEKYKSVKLLVKVEFV 581 (581)
T ss_pred ---ceEEccCCCcCCCCCeeEEEEEEeC
Confidence 8999999999988778888888763
|
|
| >KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.5e-09 Score=124.03 Aligned_cols=96 Identities=14% Similarity=0.192 Sum_probs=84.1
Q ss_pred ccCCCCcEEEEEECCEE----Eeecc----CCCCCeEeEEEEEEcCCCc--eEEEEEEecCC---CcccEEEEeehhhhh
Q 004680 7 FVNGKPTYVTIKIDNKK----VAKTS----HEHDRVWNQTFQILCAHPA--DATITITLKTK---CSVLGKIHIQALQIL 73 (737)
Q Consensus 7 ~~~~~DPYv~v~l~~~~----~~rTk----~~~nP~WnE~F~~~~~~~~--~l~~~V~D~d~---d~~iG~~~ipl~~l~ 73 (737)
+...+||||.|.+.|.. ..||| |+-||.|+|+|+|.+.-+. -|+|.|.|+|. |||+|+.+||++.|.
T Consensus 637 ~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~d~~~~ddF~GQ~tlP~~~L~ 716 (746)
T KOG0169|consen 637 FGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDYDYIGKDDFIGQTTLPVSELR 716 (746)
T ss_pred ccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEecCCCCcccccceeeccHHHhh
Confidence 45678999999997633 24676 9999999999999987665 99999999997 999999999999999
Q ss_pred cccccccceEecccCCCCCCCCccEEEEEeccC
Q 004680 74 NEASLISGFFPLEMENGKPNPDLRLRFMLWFKP 106 (737)
Q Consensus 74 ~~g~~~d~w~~L~~~~~k~~~~~~l~l~l~f~~ 106 (737)
.|. +-++|.+..|+.+..++|.+++.+.+
T Consensus 717 -~Gy---RhVpL~~~~G~~~~~asLfv~i~~~~ 745 (746)
T KOG0169|consen 717 -QGY---RHVPLLSREGEALSSASLFVRIAIVE 745 (746)
T ss_pred -Cce---eeeeecCCCCccccceeEEEEEEEec
Confidence 998 89999999999887889999988764
|
|
| >cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae | Back alignment and domain information |
|---|
Probab=98.90 E-value=3.9e-09 Score=93.89 Aligned_cols=67 Identities=22% Similarity=0.401 Sum_probs=61.1
Q ss_pred ccCCCCcEEEEEECCEEEeeccCCCCCeEeEEEEEEcCCCc-eEEEEEEecCC--CcccEEEEeehhhhhc
Q 004680 7 FVNGKPTYVTIKIDNKKVAKTSHEHDRVWNQTFQILCAHPA-DATITITLKTK--CSVLGKIHIQALQILN 74 (737)
Q Consensus 7 ~~~~~DPYv~v~l~~~~~~rTk~~~nP~WnE~F~~~~~~~~-~l~~~V~D~d~--d~~iG~~~ipl~~l~~ 74 (737)
+++.+||||+|++++..++|||-+.||+|||+|.|++. -+ .++|+|+|+.. .-.||-.=|.++.|.+
T Consensus 19 ~~~~~etyV~IKved~~kaRTr~srnd~WnE~F~i~Vd-k~nEiel~VyDk~~~~~~Pi~llW~~~sdi~E 88 (109)
T cd08689 19 FSKRPETYVSIKVEDVERARTKPSRNDRWNEDFEIPVE-KNNEEEVIVYDKGGDQPVPVGLLWLRLSDIAE 88 (109)
T ss_pred hccCCCcEEEEEECCEEEEeccCCCCCcccceEEEEec-CCcEEEEEEEeCCCCeecceeeehhhHHHHHH
Confidence 67889999999999999999998899999999999994 45 99999999976 7789999999999884
|
This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that |
| >PLN02228 Phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=98.88 E-value=5.9e-09 Score=118.90 Aligned_cols=92 Identities=16% Similarity=0.191 Sum_probs=80.1
Q ss_pred CCcEEEEEECCE----EEeecc---CCCCCeE-eEEEEEEcCCCc--eEEEEEEecCC---CcccEEEEeehhhhhcccc
Q 004680 11 KPTYVTIKIDNK----KVAKTS---HEHDRVW-NQTFQILCAHPA--DATITITLKTK---CSVLGKIHIQALQILNEAS 77 (737)
Q Consensus 11 ~DPYv~v~l~~~----~~~rTk---~~~nP~W-nE~F~~~~~~~~--~l~~~V~D~d~---d~~iG~~~ipl~~l~~~g~ 77 (737)
.||||+|.+.|. ...||+ |+.||+| ||+|.|.+..+. -|+|+|+|+|. +++||+++|||+.|. .|.
T Consensus 458 ~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~V~D~d~~~~d~figq~~lPv~~Lr-~GY 536 (567)
T PLN02228 458 PDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFKVQDYDNDTQNDFAGQTCLPLPELK-SGV 536 (567)
T ss_pred CCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEEEEeCCCCCCCCEEEEEEcchhHhh-CCe
Confidence 699999999542 224777 7799999 999999876664 99999999985 899999999999999 898
Q ss_pred cccceEecccCCCCCCCCccEEEEEeccC
Q 004680 78 LISGFFPLEMENGKPNPDLRLRFMLWFKP 106 (737)
Q Consensus 78 ~~d~w~~L~~~~~k~~~~~~l~l~l~f~~ 106 (737)
+.++|.+.+|++...++|.+++.+.+
T Consensus 537 ---R~VpL~~~~G~~l~~atLfv~~~~~~ 562 (567)
T PLN02228 537 ---RAVRLHDRAGKAYKNTRLLVSFALDP 562 (567)
T ss_pred ---eEEEccCCCCCCCCCeEEEEEEEEcC
Confidence 89999999999887789999999876
|
|
| >KOG3603 consensus Predicted phospholipase D [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.85 E-value=5.3e-08 Score=105.10 Aligned_cols=175 Identities=17% Similarity=0.177 Sum_probs=118.3
Q ss_pred CCeeeEEEeecCccchhhhccCccchhHHHHHHHHHHHhccceEEEeeccccCCcccccccccCCCCCccHHHHHHHHHH
Q 004680 405 RNWKVQVFRSIDHVSASQLAKNLTVERSIHEAYVEAIRKAERFIYIENQYFIGGCQLWEKDKHCGCRNLIPIEIALKVVS 484 (737)
Q Consensus 405 ~~~~vqv~rs~~~~~~~~~p~~~~~~~sI~~ayl~aI~~A~~~IyIEnqYFi~~~~~w~~~~~~~~~n~i~~~la~~ia~ 484 (737)
.+|..+|+.|||.|- .||.+... .+..+|++.+|++|+..|+|..-|..-..-.- -..+. .-.-++.+.+.|..
T Consensus 48 ~~C~~~vvESIP~gl--~f~~~t~~-~sT~eaW~~Ll~sA~~eldIas~ywsL~~~d~-~~~ds--St~~G~~vy~~L~~ 121 (456)
T KOG3603|consen 48 DTCKLVLVESIPAGL--TFPDASPF-LSTKEAWLELLSTAQEELDIASFYWSLTGKDT-GVVDS--STQYGEQVYNTLLA 121 (456)
T ss_pred CceeEEEEecccccC--cCcccCCC-ccHHHHHHHHhhccceEEEEEEEeecccccee-ccCCC--cchHHHHHHHHHHH
Confidence 457899999998764 35544444 67889999999999999999998875432100 00000 01135677777777
Q ss_pred HHHcCCCcEEEEEecCCCCCCCCCCcchhhhhhHHHhHHHHHHHHHHHHHhcCC-CCCCcCceEEeeccchhhhccCCcc
Q 004680 485 KIKAKERFAVYILIPMWPEGVPTSDPVQDILHWTRETMAMMYKLIGEAIQESGQ-VGHPRDFLNFFCLATREEKKSNGEF 563 (737)
Q Consensus 485 ~~~~g~~v~V~IvlP~~p~g~~~~~~~~~i~~~~~~t~~~~~~~~~~~L~~~gv-~~~p~~yl~~~~l~~~~~~~~~~~~ 563 (737)
+..+| +.|+|....-+.+-+.. =...|.+.|. ++.- + +..+|
T Consensus 122 ~~~~g--IsiriA~~~p~~~~~~~--------------------d~~~Le~~Gaa~vr~--------i-------d~~~l 164 (456)
T KOG3603|consen 122 LAKSG--VKIRIAQSYPSGGPPNA--------------------DLQVLESLGLAQVRS--------I-------DMNRL 164 (456)
T ss_pred hccCC--eEEEEEeecCCCCCCcc--------------------cHHHHHhCCCceEEe--------e-------ccccc
Confidence 75555 99999988644332211 1345667773 2210 0 11122
Q ss_pred cCCCCCCCCchhHHhhhccccceeeeeeEEEEeceEEEEeccCCCccccCCCCCcceEEEEecCCCCCcchhhHHHHHHH
Q 004680 564 VPPYSPHPMTQYWNAQMHRRFMVYVHSKLMIVDDVYLLIGSANINQRSMDGQRDTEIAIGCYQLPKNDDQNSEDISAYRL 643 (737)
Q Consensus 564 ~~~~~p~~~~~~~~~~~~r~~~iyvHSK~mIVDD~~~~IGSaNin~RS~~~~~DsEi~v~i~d~~~~~~~~~~~~~~lR~ 643 (737)
.. ..-+|+|.++||+....+||||||.||+.+- -|+++.+++.... ...++.+..
T Consensus 165 ~g-------------------~GvlHtKf~vvD~khfylGSaNfDWrSlTqv--kElGv~v~NCpcl----akDL~kiFe 219 (456)
T KOG3603|consen 165 TG-------------------GGVLHTKFWVVDIKHFYLGSANFDWRSLTQV--KELGVVVRNCPCL----AKDLKKIFE 219 (456)
T ss_pred cc-------------------CceEEEEEEEEecceEEEeccccchhhccce--eEeeeEEecChhH----HHHHHHHHH
Confidence 21 1579999999999999999999999999654 8999999987653 456778888
Q ss_pred HHHH
Q 004680 644 SLWY 647 (737)
Q Consensus 644 ~Lw~ 647 (737)
+.|.
T Consensus 220 ~yW~ 223 (456)
T KOG3603|consen 220 RYWY 223 (456)
T ss_pred HHhc
Confidence 8884
|
|
| >PF00614 PLDc: Phospholipase D Active site motif; InterPro: IPR001736 Phosphatidylcholine-hydrolysing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs) | Back alignment and domain information |
|---|
Probab=98.82 E-value=9.6e-10 Score=74.36 Aligned_cols=27 Identities=59% Similarity=1.006 Sum_probs=18.9
Q ss_pred cccCccceEEecCCCcCcccccceEEEEccccCCCCC
Q 004680 272 LFAHHQKTITVDARAQDSIFDREIMSFVGGLDLCDGR 308 (737)
Q Consensus 272 ~~~hHqK~vVVD~~~~~~~~~~~~vAfvGG~nL~~~r 308 (737)
.++||||++|||++ +||+||+|||++|
T Consensus 2 ~~~~H~K~~vvD~~----------~a~vGg~nl~~~~ 28 (28)
T PF00614_consen 2 GGSHHQKFVVVDDR----------VAFVGGANLCDGR 28 (28)
T ss_dssp TBEE---EEEETTT----------EEEEE---SSHHH
T ss_pred CcceeeEEEEEcCC----------EEEECceecCCCC
Confidence 58999999999999 9999999999864
|
PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, and/or asparagine residues which may contribute to the active site aspartic acid. An Escherichia coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs [, , , ].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3HSI_C. |
| >PRK09428 pssA phosphatidylserine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=3.8e-08 Score=110.96 Aligned_cols=138 Identities=17% Similarity=0.138 Sum_probs=92.6
Q ss_pred hHHHHHHHHHHHhccceEEEeeccccCCcccccccccCCCCCccHHHHHHHHHHHHHcCCCcEEEEEecCCCC--CCCCC
Q 004680 431 RSIHEAYVEAIRKAERFIYIENQYFIGGCQLWEKDKHCGCRNLIPIEIALKVVSKIKAKERFAVYILIPMWPE--GVPTS 508 (737)
Q Consensus 431 ~sI~~ayl~aI~~A~~~IyIEnqYFi~~~~~w~~~~~~~~~n~i~~~la~~ia~~~~~g~~v~V~IvlP~~p~--g~~~~ 508 (737)
.+...+++++|++|+++||||+.||-.+. ++.+++.+|.+|.++.++|+|+|++...-. |...+
T Consensus 34 ~~f~~~Ll~~I~~Ak~~I~l~~y~~~~D~--------------~g~~il~AL~~a~~~~~gv~VrvLvD~~Ra~Rg~iG~ 99 (451)
T PRK09428 34 ADFRETLLEKIASAKKRIYIVALYLEDDE--------------AGREILDALYQAKQQNPELDIKVLVDWHRAQRGLIGA 99 (451)
T ss_pred HHHHHHHHHHHHhcCCeEEEEEEEecCCc--------------hHHHHHHHHHHHHhcCCCcEEEEEEEccccccccccc
Confidence 57999999999999999999999998765 357899999998877788999999996310 10111
Q ss_pred CcchhhhhhHHHhHHHHHHHHHHHHHhcC--CCCCCcCceEEeeccchhhhccCCcccCCCCCCCCchhHHhhhccccce
Q 004680 509 DPVQDILHWTRETMAMMYKLIGEAIQESG--QVGHPRDFLNFFCLATREEKKSNGEFVPPYSPHPMTQYWNAQMHRRFMV 586 (737)
Q Consensus 509 ~~~~~i~~~~~~t~~~~~~~~~~~L~~~g--v~~~p~~yl~~~~l~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~i 586 (737)
.+. . +...++..|.+++ +++ .+|.+..+ .+....
T Consensus 100 ~~~---------~---~~~~~~~~l~~~~~gv~v------~~f~~p~~--------------------------~~e~~g 135 (451)
T PRK09428 100 AAS---------N---TNADWYCEMAQEYPGVDI------PVYGVPVN--------------------------TREALG 135 (451)
T ss_pred CCC---------C---cCHHHHHHHHHhCCCceE------EEcCCccc--------------------------cchhhh
Confidence 000 0 0123567787764 553 34422100 000124
Q ss_pred eeeeeEEEEeceEEEEeccCCCccccCC----CCCcceEEEEecCCC
Q 004680 587 YVHSKLMIVDDVYLLIGSANINQRSMDG----QRDTEIAIGCYQLPK 629 (737)
Q Consensus 587 yvHSK~mIVDD~~~~IGSaNin~RS~~~----~~DsEi~v~i~d~~~ 629 (737)
..|-|++||||++++.| |||++--+.. ..|. .+.+.+|..
T Consensus 136 r~HrKi~IiD~~v~ysG-aNi~d~Yl~~~~~~r~Dr--y~~i~g~~l 179 (451)
T PRK09428 136 VLHLKGFIIDDTVLYSG-ASLNNVYLHQHDKYRYDR--YHLIRNAEL 179 (451)
T ss_pred hceeeEEEECCCEEEec-ccccHHHhcCCcccCcce--EEEEeCchH
Confidence 58999999999999999 8999866542 2355 445667653
|
|
| >cd00030 C2 C2 domain | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.4e-08 Score=86.88 Aligned_cols=77 Identities=23% Similarity=0.402 Sum_probs=65.6
Q ss_pred CCCCcEEEEEECCEEEeecc---CCCCCeEeEEEEEEcCC-Cc-eEEEEEEecCC---CcccEEEEeehhhhhccccccc
Q 004680 9 NGKPTYVTIKIDNKKVAKTS---HEHDRVWNQTFQILCAH-PA-DATITITLKTK---CSVLGKIHIQALQILNEASLIS 80 (737)
Q Consensus 9 ~~~DPYv~v~l~~~~~~rTk---~~~nP~WnE~F~~~~~~-~~-~l~~~V~D~d~---d~~iG~~~ipl~~l~~~g~~~d 80 (737)
+.++|||++.+.+....||+ ++.||.|||+|.|.+.. .. .|.|.|+|.+. +.+||.+.+++..+........
T Consensus 18 ~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ig~~~~~l~~l~~~~~~~~ 97 (102)
T cd00030 18 GKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFSKDDFLGEVEIPLSELLDSGKEGE 97 (102)
T ss_pred CCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCCCCceeEEEEEeHHHhhhcCCcCc
Confidence 57899999999985556887 77999999999999987 44 99999999886 7999999999999874456677
Q ss_pred ceEec
Q 004680 81 GFFPL 85 (737)
Q Consensus 81 ~w~~L 85 (737)
.|++|
T Consensus 98 ~~~~l 102 (102)
T cd00030 98 LWLPL 102 (102)
T ss_pred ceecC
Confidence 88765
|
The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. |
| >KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.2e-08 Score=115.12 Aligned_cols=101 Identities=13% Similarity=0.183 Sum_probs=89.3
Q ss_pred cCCCCcEEEEEECCEEEeecc---CCCCCeEeEEEEEEcCCCc-eEEEEEEecCC--CcccEEEEeehhhhhcccccccc
Q 004680 8 VNGKPTYVTIKIDNKKVAKTS---HEHDRVWNQTFQILCAHPA-DATITITLKTK--CSVLGKIHIQALQILNEASLISG 81 (737)
Q Consensus 8 ~~~~DPYv~v~l~~~~~~rTk---~~~nP~WnE~F~~~~~~~~-~l~~~V~D~d~--d~~iG~~~ipl~~l~~~g~~~d~ 81 (737)
.|++||||+|.++...+.||. +++.|-|.|+|+|.+.-.- .|.|-|+|.|. |+.||.+.|.=+.|. .-.-.|.
T Consensus 23 ~g~~D~yC~v~lD~E~v~RT~tv~ksL~PF~gEe~~~~iP~~F~~l~fYv~D~d~~~D~~IGKvai~re~l~-~~~~~d~ 101 (800)
T KOG2059|consen 23 SGMRDCYCTVNLDQEEVCRTATVEKSLCPFFGEEFYFEIPRTFRYLSFYVWDRDLKRDDIIGKVAIKREDLH-MYPGKDT 101 (800)
T ss_pred CCCcCcceEEeecchhhhhhhhhhhhcCCccccceEEecCcceeeEEEEEeccccccccccceeeeeHHHHh-hCCCCcc
Confidence 588999999999999999999 9999999999999997666 99999999998 999999999999999 6668899
Q ss_pred eEeccc--CCCCCCCCccEEEEEeccCCCccc
Q 004680 82 FFPLEM--ENGKPNPDLRLRFMLWFKPAAYEP 111 (737)
Q Consensus 82 w~~L~~--~~~k~~~~~~l~l~l~f~~~~~~~ 111 (737)
|+.|.. ++.. -.|+||+.|++.+..++.
T Consensus 102 W~~L~~VD~dsE--VQG~v~l~l~~~e~~~~~ 131 (800)
T KOG2059|consen 102 WFSLQPVDPDSE--VQGKVHLELALTEAIQSS 131 (800)
T ss_pred ceeccccCCChh--hceeEEEEEEeccccCCC
Confidence 999953 3333 358999999999977753
|
|
| >smart00239 C2 Protein kinase C conserved region 2 (CalB) | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.7e-08 Score=87.07 Aligned_cols=68 Identities=24% Similarity=0.447 Sum_probs=59.7
Q ss_pred CCCCcEEEEEECCE--EEeecc---CCCCCeEeEEEEEEcCCC-c-eEEEEEEecCC---CcccEEEEeehhhhhcccc
Q 004680 9 NGKPTYVTIKIDNK--KVAKTS---HEHDRVWNQTFQILCAHP-A-DATITITLKTK---CSVLGKIHIQALQILNEAS 77 (737)
Q Consensus 9 ~~~DPYv~v~l~~~--~~~rTk---~~~nP~WnE~F~~~~~~~-~-~l~~~V~D~d~---d~~iG~~~ipl~~l~~~g~ 77 (737)
+..+|||++.+.+. ...||+ ++.||.|||+|.|++.+. . .|.|+|+|++. +.+||.+.+++.++. .+.
T Consensus 19 ~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~~~~~~G~~~~~l~~~~-~~~ 96 (101)
T smart00239 19 GKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFGRDDFIGQVTIPLSDLL-LGG 96 (101)
T ss_pred CCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCccCCceeEEEEEEHHHcc-cCc
Confidence 46899999999876 567888 777999999999999887 5 99999999986 899999999999988 554
|
Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. |
| >COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.8e-08 Score=119.45 Aligned_cols=79 Identities=22% Similarity=0.294 Sum_probs=70.5
Q ss_pred ccCCCCcEEEEEECCEEEeecc---CCCCCeEeEEEEEEcCCCc--eEEEEEEecCC---CcccEEEEeehhhhhccccc
Q 004680 7 FVNGKPTYVTIKIDNKKVAKTS---HEHDRVWNQTFQILCAHPA--DATITITLKTK---CSVLGKIHIQALQILNEASL 78 (737)
Q Consensus 7 ~~~~~DPYv~v~l~~~~~~rTk---~~~nP~WnE~F~~~~~~~~--~l~~~V~D~d~---d~~iG~~~ipl~~l~~~g~~ 78 (737)
.+|-+||||++.++++.+.||+ +|+||+|||+|.+++.+.. .++|.|+|+|. ++.||++.|+|+.|. .+..
T Consensus 1057 ~ng~sDpfv~~~ln~k~vyktkv~KktlNPvwNEe~~i~v~~r~~D~~~i~v~Dwd~~~knd~lg~~~idL~~l~-~~~~ 1135 (1227)
T COG5038 1057 ENGYSDPFVKLFLNEKSVYKTKVVKKTLNPVWNEEFTIEVLNRVKDVLTINVNDWDSGEKNDLLGTAEIDLSKLE-PGGT 1135 (1227)
T ss_pred cCCCCCceEEEEecceecccccchhccCCCCccccceEeeeccccceEEEEEeecccCCCccccccccccHhhcC-cCCc
Confidence 3567999999999999899999 9999999999999987665 99999999997 999999999999999 7777
Q ss_pred ccceEecc
Q 004680 79 ISGFFPLE 86 (737)
Q Consensus 79 ~d~w~~L~ 86 (737)
.+.-.+|.
T Consensus 1136 ~n~~i~ld 1143 (1227)
T COG5038 1136 TNSNIPLD 1143 (1227)
T ss_pred cceeeecc
Confidence 77767774
|
|
| >PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.2e-08 Score=85.64 Aligned_cols=59 Identities=19% Similarity=0.397 Sum_probs=50.1
Q ss_pred cCCCCcEEEEEECCE--EEeecc---CCCCCeEeEEEEEEcCCCc--eEEEEEEecCC---CcccEEEE
Q 004680 8 VNGKPTYVTIKIDNK--KVAKTS---HEHDRVWNQTFQILCAHPA--DATITITLKTK---CSVLGKIH 66 (737)
Q Consensus 8 ~~~~DPYv~v~l~~~--~~~rTk---~~~nP~WnE~F~~~~~~~~--~l~~~V~D~d~---d~~iG~~~ 66 (737)
.+.+||||++.+++. ...||+ ++.||+|||+|.|++.... .|.|+|+|++. +++||+++
T Consensus 17 ~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~~~iG~~~ 85 (85)
T PF00168_consen 17 NGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKDELIGEVK 85 (85)
T ss_dssp TSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSEEEEEEEE
T ss_pred CCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecccccceEEEEEECCCCCCCCEEEEEC
Confidence 568899999999773 236887 8999999999999965554 99999999987 89999985
|
C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A .... |
| >smart00155 PLDc Phospholipase D | Back alignment and domain information |
|---|
Probab=98.57 E-value=5e-08 Score=66.50 Aligned_cols=26 Identities=58% Similarity=0.760 Sum_probs=24.7
Q ss_pred eeeeeeEEEEeceEEEEeccCCCccc
Q 004680 586 VYVHSKLMIVDDVYLLIGSANINQRS 611 (737)
Q Consensus 586 iyvHSK~mIVDD~~~~IGSaNin~RS 611 (737)
.+.|+|+||||+++++|||+|++.||
T Consensus 3 ~~~H~K~~v~D~~~~~iGs~N~~~~~ 28 (28)
T smart00155 3 GVLHTKLMIVDDEIAYIGSANLDGRS 28 (28)
T ss_pred CcEEeEEEEEcCCEEEEeCccCCCCC
Confidence 57999999999999999999999987
|
Active site motifs. Phosphatidylcholine-hydrolyzing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs). PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, aspartic acid, and/or asparagine residues which may contribute to the active site. An E. coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs. The profile contained here represents only the putative active site regions, since an accurate multiple alignment of the repeat units has not be |
| >cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=98.51 E-value=3e-07 Score=86.57 Aligned_cols=67 Identities=18% Similarity=0.173 Sum_probs=56.6
Q ss_pred CCCcEEEEEECC--EEEeecc---CCCC--CeEeEEEEEEcCC---------------------C---c-eEEEEEEecC
Q 004680 10 GKPTYVTIKIDN--KKVAKTS---HEHD--RVWNQTFQILCAH---------------------P---A-DATITITLKT 57 (737)
Q Consensus 10 ~~DPYv~v~l~~--~~~~rTk---~~~n--P~WnE~F~~~~~~---------------------~---~-~l~~~V~D~d 57 (737)
.+||||++.+.+ ....+|. +++| |+|||+|.|++.. . . .|+|+|+|+|
T Consensus 24 ~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~L~lqvwD~D 103 (133)
T cd08374 24 MSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHFWSLDETEYKIPPKLTLQVWDND 103 (133)
T ss_pred ccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccccccCcceEecCcEEEEEEEECc
Confidence 599999999976 3445666 8999 9999999988766 1 2 9999999999
Q ss_pred C---CcccEEEEeehhhhhcccc
Q 004680 58 K---CSVLGKIHIQALQILNEAS 77 (737)
Q Consensus 58 ~---d~~iG~~~ipl~~l~~~g~ 77 (737)
. |++||+++++|+.+. .+.
T Consensus 104 ~~s~dd~iG~~~l~l~~l~-~~~ 125 (133)
T cd08374 104 KFSPDDFLGSLELDLSILP-RPA 125 (133)
T ss_pred ccCCCCcceEEEEEhhhcc-ccc
Confidence 7 999999999999988 554
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >KOG1264 consensus Phospholipase C [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.5e-07 Score=107.15 Aligned_cols=96 Identities=15% Similarity=0.166 Sum_probs=81.5
Q ss_pred CcEEEEEECC----EEEeecc----CCCCCeEe-EEEEEEcCCCc--eEEEEEEecCC---CcccEEEEeehhhhhcccc
Q 004680 12 PTYVTIKIDN----KKVAKTS----HEHDRVWN-QTFQILCAHPA--DATITITLKTK---CSVLGKIHIQALQILNEAS 77 (737)
Q Consensus 12 DPYv~v~l~~----~~~~rTk----~~~nP~Wn-E~F~~~~~~~~--~l~~~V~D~d~---d~~iG~~~ipl~~l~~~g~ 77 (737)
-|+|.|.+-| ..+.+|+ |++||+|| |+|+|.+.++. -|+|.|.|.|. -.|||+|++|++.|. .|.
T Consensus 1086 cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeDmfs~~~FiaqA~yPv~~ik-~Gf 1164 (1267)
T KOG1264|consen 1086 CPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEEDMFSDPNFLAQATYPVKAIK-SGF 1164 (1267)
T ss_pred CCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEecccccCCcceeeeeecchhhhh-ccc
Confidence 5999999954 3344555 99999999 99999988886 99999999998 569999999999999 887
Q ss_pred cccceEecccCCCCCCCCccEEEEEeccCCCccc
Q 004680 78 LISGFFPLEMENGKPNPDLRLRFMLWFKPAAYEP 111 (737)
Q Consensus 78 ~~d~w~~L~~~~~k~~~~~~l~l~l~f~~~~~~~ 111 (737)
+-+||.+..+..+..++|.+.++..|+....
T Consensus 1165 ---RsVpLkN~ySEdlELaSLLv~i~m~~~~~~~ 1195 (1267)
T KOG1264|consen 1165 ---RSVPLKNGYSEDLELASLLVFIEMRPVLESE 1195 (1267)
T ss_pred ---eeeecccCchhhhhhhhheeeeEeccccCcc
Confidence 7889977666666788999999999987753
|
|
| >COG1502 Cls Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.4e-06 Score=98.52 Aligned_cols=134 Identities=24% Similarity=0.261 Sum_probs=97.2
Q ss_pred HHHHHHHHHccccEEEEEE-eecCCceEEeeCCchhhccchHHHHHHHHHHHHHcCCeEEEEEeCCCCC--ccccccccc
Q 004680 164 WEDVYKAIEGAKHLIYIAG-WSLNPKMVLVRDSQTEIAHARGVQLGELLKHKAEEGVAVRIMLWDDETS--LPIIKNKGV 240 (737)
Q Consensus 164 ~~~l~~aI~~Ak~~I~I~~-w~~~~~~~L~r~~~~~~~~~~~~~l~~lL~~kA~rGV~VriLvwD~~~s--~~~~~~~g~ 240 (737)
-..++.+|.+|+++|+|+. |.+ . +..+.++|+.++++||+|+|++ ++.+. .....
T Consensus 272 ~~~~~~~i~~A~~~i~i~~pYf~-------~----------~~~~~~al~~a~~~Gv~V~ii~-~~~~~~d~~~~~---- 329 (438)
T COG1502 272 NRLLLKAINSARESILIATPYFV-------P----------DRELLAALKAAARRGVDVRIII-PSLGANDSAIVH---- 329 (438)
T ss_pred HHHHHHHHHhhceEEEEEcCCcC-------C----------CHHHHHHHHHHHhcCCEEEEEe-CCCCCCChHHHH----
Confidence 3689999999999999997 543 2 3567899999999999999998 74322 21111
Q ss_pred cccccHHHHHHHhcCCcEEEEcCCCCCCCCccccCccceEEecCCCcCcccccceEEEEccccCCCCCcCCCCCcccccC
Q 004680 241 MRTHDEDAFAYFKHTKVICKLCPRLHHKFPTLFAHHQKTITVDARAQDSIFDREIMSFVGGLDLCDGRYDTEKHSLFQTL 320 (737)
Q Consensus 241 ~~~~~~~~~~~l~~~gv~v~~~~r~~~~~~~~~~hHqK~vVVD~~~~~~~~~~~~vAfvGG~nL~~~r~Dt~~H~l~~~l 320 (737)
.......+.+...|+++...+. ....|.|++|||++ ++++|+.|+...-+. +
T Consensus 330 --~~~~~~~~~l~~~gv~i~~~~~-------g~~lH~K~~iiD~~----------~~~vGS~N~~~rS~~---------l 381 (438)
T COG1502 330 --AAYRAYLKELLEAGVKVYEYPG-------GAFLHSKVMIIDDR----------TVLVGSANLDPRSLR---------L 381 (438)
T ss_pred --HHHHHHHHHHHHhCCEEEEecC-------CCcceeeEEEEcCC----------EEEEeCCcCCHhHHH---------H
Confidence 0012344567788998865542 13789999999999 999999999875321 0
Q ss_pred CCCcccCccccccccCcccCCCCCCCCceeccceeeCH-HHHHHHHHHHHHhhhc
Q 004680 321 NSESHCFDFYQINIAGASLHKGGPREPWHDVHACITGE-AAWDVLTNFEQRWTKQ 374 (737)
Q Consensus 321 ~~~~~~~d~~~~~~~g~~~~~~~~~~pWhDv~~~v~Gp-av~dl~~~F~~rW~~~ 374 (737)
+ -.+.+.|+.+ .+.++...|...|...
T Consensus 382 -------N--------------------~E~~~~i~d~~~~~~~~~~~~~~~~~s 409 (438)
T COG1502 382 -------N--------------------FEVGLVIEDPELALKLRREFEADLARS 409 (438)
T ss_pred -------h--------------------hhheeEEeCHHHHHHHHHHHHHHHHHH
Confidence 1 1456788887 7889999999776654
|
|
| >PF00614 PLDc: Phospholipase D Active site motif; InterPro: IPR001736 Phosphatidylcholine-hydrolysing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs) | Back alignment and domain information |
|---|
Probab=98.28 E-value=3.8e-07 Score=61.80 Aligned_cols=26 Identities=31% Similarity=0.468 Sum_probs=18.2
Q ss_pred eeeeeeEEEEeceEEEEeccCCCccc
Q 004680 586 VYVHSKLMIVDDVYLLIGSANINQRS 611 (737)
Q Consensus 586 iyvHSK~mIVDD~~~~IGSaNin~RS 611 (737)
...|+|++||||++++|||+||+.|+
T Consensus 3 ~~~H~K~~vvD~~~a~vGg~nl~~~~ 28 (28)
T PF00614_consen 3 GSHHQKFVVVDDRVAFVGGANLCDGR 28 (28)
T ss_dssp BEE---EEEETTTEEEEE---SSHHH
T ss_pred cceeeEEEEEcCCEEEECceecCCCC
Confidence 57999999999999999999999875
|
PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, and/or asparagine residues which may contribute to the active site aspartic acid. An Escherichia coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs [, , , ].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3HSI_C. |
| >KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.11 E-value=5.3e-06 Score=93.17 Aligned_cols=81 Identities=16% Similarity=0.213 Sum_probs=60.2
Q ss_pred cCCCCcEEEEEE--CCEEE--eecc---CCCCCeEeEEEEEEcCCCc----eEEEEEEecCC---CcccEEEEeehhhhh
Q 004680 8 VNGKPTYVTIKI--DNKKV--AKTS---HEHDRVWNQTFQILCAHPA----DATITITLKTK---CSVLGKIHIQALQIL 73 (737)
Q Consensus 8 ~~~~DPYv~v~l--~~~~~--~rTk---~~~nP~WnE~F~~~~~~~~----~l~~~V~D~d~---d~~iG~~~ipl~~l~ 73 (737)
.+.+||||++.+ +++++ .||. ++.||+|||+|.|.|.... .|.|+|+|+|. +++||.+.+-...
T Consensus 316 ~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~nesf~F~vp~~~l~~~~l~l~V~d~d~~~~~~~iG~~~lG~~~-- 393 (421)
T KOG1028|consen 316 GGLSDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVFNETFVFDVPPEQLAEVSLELTVWDHDTLGSNDLIGRCILGSDS-- 393 (421)
T ss_pred CCCCCccEEEEEecCCceeeeeeeecccCCCCCcccccEEEeCCHHHhheeEEEEEEEEcccccccceeeEEEecCCC--
Confidence 478899999999 34333 3444 9999999999999886442 89999999997 8899999887664
Q ss_pred cccccccceEecccCCCC
Q 004680 74 NEASLISGFFPLEMENGK 91 (737)
Q Consensus 74 ~~g~~~d~w~~L~~~~~k 91 (737)
.|.....|.+.+..-++
T Consensus 394 -~~~~~~hW~~m~~~p~~ 410 (421)
T KOG1028|consen 394 -TGEEVRHWQEMLNSPRK 410 (421)
T ss_pred -CchHHHHHHHHHhCccC
Confidence 34445666666543333
|
|
| >KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.10 E-value=1.6e-06 Score=98.04 Aligned_cols=79 Identities=19% Similarity=0.314 Sum_probs=66.3
Q ss_pred CCCCCeEeEEEEEEcCCCc--eEEEEEEecCC---------------------------------------CcccEEEEe
Q 004680 29 HEHDRVWNQTFQILCAHPA--DATITITLKTK---------------------------------------CSVLGKIHI 67 (737)
Q Consensus 29 ~~~nP~WnE~F~~~~~~~~--~l~~~V~D~d~---------------------------------------d~~iG~~~i 67 (737)
+|+||+|||.|.|.+.+-. ++++-|+|.|- |||+|++.|
T Consensus 186 ~TLnPkW~EkF~F~IeDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNi 265 (1103)
T KOG1328|consen 186 KTLNPKWSEKFQFTIEDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINI 265 (1103)
T ss_pred ccCCcchhhheeeehhccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCcccccccccccc
Confidence 8999999999999998876 89999988652 589999999
Q ss_pred ehhhhhcccccccceEecccCCCCCCCCccEEEEEeccCCCc
Q 004680 68 QALQILNEASLISGFFPLEMENGKPNPDLRLRFMLWFKPAAY 109 (737)
Q Consensus 68 pl~~l~~~g~~~d~w~~L~~~~~k~~~~~~l~l~l~f~~~~~ 109 (737)
||.++- ...+|.||.|...+.+..-.|.+++.|+.....+
T Consensus 266 pl~EiP--~~Gld~WFkLepRS~~S~VqG~~~LklwLsT~e~ 305 (1103)
T KOG1328|consen 266 PLAEIP--PDGLDQWFKLEPRSDKSKVQGQVKLKLWLSTKEE 305 (1103)
T ss_pred chhcCC--cchHHHHhccCcccccccccceEEEEEEEeeecc
Confidence 999986 6678999999876666555678999998876544
|
|
| >KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.01 E-value=1.1e-05 Score=89.18 Aligned_cols=93 Identities=19% Similarity=0.295 Sum_probs=74.7
Q ss_pred cCCCCcEEEEEECCEEEeecc---CCCCCeEe-EEEEEEcCCCc----eEEEEEEecCC---CcccEEEEeehhhhhc--
Q 004680 8 VNGKPTYVTIKIDNKKVAKTS---HEHDRVWN-QTFQILCAHPA----DATITITLKTK---CSVLGKIHIQALQILN-- 74 (737)
Q Consensus 8 ~~~~DPYv~v~l~~~~~~rTk---~~~nP~Wn-E~F~~~~~~~~----~l~~~V~D~d~---d~~iG~~~ipl~~l~~-- 74 (737)
+...|.||.|++++... ||- +++||.|| |-|.|.+.+.. +|.|+|+|+|. +|-||.+.|.++.|.-
T Consensus 22 sd~tdafveik~~n~t~-ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dtysandaigkv~i~idpl~~e~ 100 (1169)
T KOG1031|consen 22 SDLTDAFVEIKFANTTF-KTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDTYSANDAIGKVNIDIDPLCLEE 100 (1169)
T ss_pred cccchheeEEEecccce-ehhhhhhhcCCcccccceEEecChhhhccCCeeEEEecccccccccccceeeeccChHHHHh
Confidence 45679999999999876 777 99999999 77888875542 99999999998 9999999999888762
Q ss_pred -------ccccccceEecccCCCCCCCCccEEEEEe
Q 004680 75 -------EASLISGFFPLEMENGKPNPDLRLRFMLW 103 (737)
Q Consensus 75 -------~g~~~d~w~~L~~~~~k~~~~~~l~l~l~ 103 (737)
.|.++..|+|+.|.-.- -.|+|.+-++
T Consensus 101 aaqavhgkgtvisgw~pifdtihg--irgeinvivk 134 (1169)
T KOG1031|consen 101 AAQAVHGKGTVISGWFPIFDTIHG--IRGEINVIVK 134 (1169)
T ss_pred HHhhhcCCceEEeeeeecceeccc--ccceeEEEEE
Confidence 25788999999874211 2467777665
|
|
| >TIGR03705 poly_P_kin polyphosphate kinase 1 | Back alignment and domain information |
|---|
Probab=97.99 E-value=6.6e-05 Score=88.31 Aligned_cols=131 Identities=15% Similarity=0.109 Sum_probs=92.2
Q ss_pred HHHHHHHHhccc-----eEEEeeccccCCcccccccccCCCCCccHHHHHHHHHHHHHcCCCcEEEEEecCCCCCCCCCC
Q 004680 435 EAYVEAIRKAER-----FIYIENQYFIGGCQLWEKDKHCGCRNLIPIEIALKVVSKIKAKERFAVYILIPMWPEGVPTSD 509 (737)
Q Consensus 435 ~ayl~aI~~A~~-----~IyIEnqYFi~~~~~w~~~~~~~~~n~i~~~la~~ia~~~~~g~~v~V~IvlP~~p~g~~~~~ 509 (737)
...++.|++|.+ .|.|+-.-+...+ .+..+|.+|+++| ++|.|++-...-.+ +.
T Consensus 342 ~~v~~~i~~Aa~DP~V~~Ik~tlYr~~~~s-----------------~ii~aL~~Aa~~G--k~V~v~veLkArfd--e~ 400 (672)
T TIGR03705 342 DPVVEFLRQAAEDPDVLAIKQTLYRTSKDS-----------------PIIDALIEAAENG--KEVTVVVELKARFD--EE 400 (672)
T ss_pred HHHHHHHHHHhcCCCceEEEEEEEEecCCc-----------------HHHHHHHHHHHcC--CEEEEEEEehhhcc--ch
Confidence 677889999998 8999864444332 6789999998888 88999998543111 11
Q ss_pred cchhhhhhHHHhHHHHHHHHHHHHHhcCCCCCCcCceEEeeccchhhhccCCcccCCCCCCCCchhHHhhhccccceeee
Q 004680 510 PVQDILHWTRETMAMMYKLIGEAIQESGQVGHPRDFLNFFCLATREEKKSNGEFVPPYSPHPMTQYWNAQMHRRFMVYVH 589 (737)
Q Consensus 510 ~~~~i~~~~~~t~~~~~~~~~~~L~~~gv~~~p~~yl~~~~l~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~iyvH 589 (737)
+ . -.+.+.|+++|+++ +|++ + ...+|
T Consensus 401 ~----------n-----i~wa~~le~aG~~v-------iyg~-------------~-------------------~~k~H 426 (672)
T TIGR03705 401 A----------N-----IRWARRLEEAGVHV-------VYGV-------------V-------------------GLKTH 426 (672)
T ss_pred h----------h-----HHHHHHHHHcCCEE-------EEcC-------------C-------------------Ceeee
Confidence 1 1 12567899999975 2221 1 15899
Q ss_pred eeEEEEec-------eEEEEeccCCCccccCCCCCcceEEEEecCCCCCcchhhHHHHHHHHHHH
Q 004680 590 SKLMIVDD-------VYLLIGSANINQRSMDGQRDTEIAIGCYQLPKNDDQNSEDISAYRLSLWY 647 (737)
Q Consensus 590 SK~mIVDD-------~~~~IGSaNin~RS~~~~~DsEi~v~i~d~~~~~~~~~~~~~~lR~~Lw~ 647 (737)
||+++||. +|+.|||.|+|...-..- +++++...+++. ...+..+...||.
T Consensus 427 ~K~~li~r~~~~~~~~y~~igTgN~n~~ta~~y--~D~~l~t~~~~i-----~~d~~~~F~~l~~ 484 (672)
T TIGR03705 427 AKLALVVRREGGELRRYVHLGTGNYHPKTARLY--TDLSLFTADPEI-----GRDVARVFNYLTG 484 (672)
T ss_pred eEEEEEEEeeCCceEEEEEecCCCCCCcccccc--cceeEEEeChHH-----HHHHHHHHHHhhC
Confidence 99999997 489999999999976445 677777555543 3556666667765
|
Members of this protein family are the enzyme polyphosphate kinase 1 (PPK1). This family is found in many prokaryotes and also in Dictyostelium. Sequences in the seed alignment were taken from prokaryotic consecutive two-gene pairs in which the other gene encodes an exopolyphosphatase. It synthesizes polyphosphate from the terminal phosphate of ATP but not GTP, in contrast to PPK2. |
| >KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.86 E-value=2.8e-05 Score=88.48 Aligned_cols=100 Identities=11% Similarity=0.179 Sum_probs=77.0
Q ss_pred cccCCCCcEEEEEECCEEE---eecc---CCCCCeEeEEEEEEcCCC---------------c--eEEEEEEec-CC---
Q 004680 6 VFVNGKPTYVTIKIDNKKV---AKTS---HEHDRVWNQTFQILCAHP---------------A--DATITITLK-TK--- 58 (737)
Q Consensus 6 ~~~~~~DPYv~v~l~~~~~---~rTk---~~~nP~WnE~F~~~~~~~---------------~--~l~~~V~D~-d~--- 58 (737)
+.++.+||||++...+... .+|+ +|.||.|||.|+|.+.-. + .|.+++++. +.
T Consensus 146 ~~~~~~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~irv~lW~~~~~~~~ 225 (800)
T KOG2059|consen 146 IINGQCDPFARVTLCGPSKLKEKKTKVKKKTTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEIRVDLWNDLNLVIN 225 (800)
T ss_pred eeCCCCCcceEEeecccchhhccccceeeeccCcchhhheeeeeccccccccchhcCcccCCceeeEEEeeccchhhhhh
Confidence 4567899999999965221 3666 999999999999987655 4 788888884 44
Q ss_pred CcccEEEEeehhhhhcccccccceEeccc-CCCCCC----CCccEEEEEeccC
Q 004680 59 CSVLGKIHIQALQILNEASLISGFFPLEM-ENGKPN----PDLRLRFMLWFKP 106 (737)
Q Consensus 59 d~~iG~~~ipl~~l~~~g~~~d~w~~L~~-~~~k~~----~~~~l~l~l~f~~ 106 (737)
++|+|++.+|+..+. ....-+.||-|.. ++|+.. ..|.+++.+.|+.
T Consensus 226 ~~FlGevrv~v~~~~-~~s~p~~W~~Lqp~~~g~~~~~~~~lGslrl~v~y~~ 277 (800)
T KOG2059|consen 226 DVFLGEVRVPVDVLR-QKSSPAAWYYLQPRPNGEKSSDGGDLGSLRLNVTYTE 277 (800)
T ss_pred hhhceeEEeehhhhh-hccCccceEEEecCCCcccCCCCCCccceeeeEEeee
Confidence 999999999999998 6666789998863 233221 4578898888864
|
|
| >KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.75 E-value=1.3e-05 Score=90.95 Aligned_cols=66 Identities=15% Similarity=0.153 Sum_probs=56.4
Q ss_pred cCCCCcEEEEEECCEEE------eecc---CCCCCeEeEEEEEEcCCC-----c-eEEEEEEecCC---CcccEEEEeeh
Q 004680 8 VNGKPTYVTIKIDNKKV------AKTS---HEHDRVWNQTFQILCAHP-----A-DATITITLKTK---CSVLGKIHIQA 69 (737)
Q Consensus 8 ~~~~DPYv~v~l~~~~~------~rTk---~~~nP~WnE~F~~~~~~~-----~-~l~~~V~D~d~---d~~iG~~~ipl 69 (737)
+|-|||||.|.+.-+.+ -||+ .|+|||++|+|+|.+.-. + -|.|||||.|. +||=|++.+.|
T Consensus 965 NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFsVp~e~c~te~Am~~FTVMDHD~L~sNDFaGEA~L~L 1044 (1103)
T KOG1328|consen 965 NGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFSVPPEPCSTETAMLHFTVMDHDYLRSNDFAGEAFLEL 1044 (1103)
T ss_pred CCCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheeeecCccccccccceEEEEeeccceecccccchHHHHhh
Confidence 68999999999986544 3888 899999999999987443 3 89999999997 99999999988
Q ss_pred hhhh
Q 004680 70 LQIL 73 (737)
Q Consensus 70 ~~l~ 73 (737)
..+-
T Consensus 1045 g~vp 1048 (1103)
T KOG1328|consen 1045 GDVP 1048 (1103)
T ss_pred CCCC
Confidence 8765
|
|
| >KOG3964 consensus Phosphatidylglycerolphosphate synthase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0025 Score=68.84 Aligned_cols=121 Identities=18% Similarity=0.189 Sum_probs=73.9
Q ss_pred chhHHHHHHHHHHccccEEEEEEeecCCceEEeeCCchhhccchHHHHHHHHHHHHHc--CCeEEEEEeCCC-CCccccc
Q 004680 160 PGKLWEDVYKAIEGAKHLIYIAGWSLNPKMVLVRDSQTEIAHARGVQLGELLKHKAEE--GVAVRIMLWDDE-TSLPIIK 236 (737)
Q Consensus 160 ~~~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~L~r~~~~~~~~~~~~~l~~lL~~kA~r--GV~VriLvwD~~-~s~~~~~ 236 (737)
+.++|+.+...|.+||++|+|+. .||-. ....|.+.|..+.+. -.+|.||+ |.. ++.....
T Consensus 37 p~~fy~~lk~~I~~aq~Ri~las------LYlG~---------~E~elv~cl~~aL~~~~~L~v~iLl-D~~rgtr~~~~ 100 (469)
T KOG3964|consen 37 PPEFYQRLKKLIKKAQRRIFLAS------LYLGK---------LERELVDCLSNALEKNPSLKVSILL-DFLRGTRELPN 100 (469)
T ss_pred CHHHHHHHHHHHHHhhheeeeee------eccch---------hHHHHHHHHHHHhccCCCcEEEeeh-hhhhhcccCcc
Confidence 36999999999999999999996 34422 356788888887765 79999998 863 2221110
Q ss_pred cccccccccHHHHHHHhcCCcEEEEcCC----C------CCC-CCccccCccceEEecCCCcCcccccceEEEEccccCC
Q 004680 237 NKGVMRTHDEDAFAYFKHTKVICKLCPR----L------HHK-FPTLFAHHQKTITVDARAQDSIFDREIMSFVGGLDLC 305 (737)
Q Consensus 237 ~~g~~~~~~~~~~~~l~~~gv~v~~~~r----~------~~~-~~~~~~hHqK~vVVD~~~~~~~~~~~~vAfvGG~nL~ 305 (737)
.-. |.....-.+++ ...|+|.++.. + |.+ .-..+..|-|+.-+|.+ ..+-|.|++
T Consensus 101 ~~s-~llp~~l~kkf--~e~vd~~lyhtp~Lrg~~k~Lvp~rfneg~GlQhmKIy~fdde-----------viiSGanls 166 (469)
T KOG3964|consen 101 SCS-ALLPVWLGKKF--PERVDESLYHTPFLRGLSKSLVPARFNEGLGLQHMKIYGFDDE-----------VIISGANLS 166 (469)
T ss_pred cch-hhchHHHhhhh--hhhhceeeecChhhhhhhhhcCchhhccccchhhhhhhcccHh-----------hhcccccch
Confidence 000 00000001111 12355544321 0 101 12346789999999997 478899999
Q ss_pred CCCcC
Q 004680 306 DGRYD 310 (737)
Q Consensus 306 ~~r~D 310 (737)
..|+-
T Consensus 167 ~dyfT 171 (469)
T KOG3964|consen 167 NDYFT 171 (469)
T ss_pred hhhhc
Confidence 98553
|
|
| >smart00155 PLDc Phospholipase D | Back alignment and domain information |
|---|
Probab=97.59 E-value=5.3e-05 Score=51.57 Aligned_cols=26 Identities=23% Similarity=0.344 Sum_probs=23.5
Q ss_pred cccCccceEEecCCCcCcccccceEEEEccccCCCC
Q 004680 272 LFAHHQKTITVDARAQDSIFDREIMSFVGGLDLCDG 307 (737)
Q Consensus 272 ~~~hHqK~vVVD~~~~~~~~~~~~vAfvGG~nL~~~ 307 (737)
..++|+|++|||++ .+|+||.|++..
T Consensus 2 ~~~~H~K~~v~D~~----------~~~iGs~N~~~~ 27 (28)
T smart00155 2 DGVLHTKLMIVDDE----------IAYIGSANLDGR 27 (28)
T ss_pred CCcEEeEEEEEcCC----------EEEEeCccCCCC
Confidence 36799999999999 999999999874
|
Active site motifs. Phosphatidylcholine-hydrolyzing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs). PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, aspartic acid, and/or asparagine residues which may contribute to the active site. An E. coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs. The profile contained here represents only the putative active site regions, since an accurate multiple alignment of the repeat units has not be |
| >PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00083 Score=70.62 Aligned_cols=156 Identities=17% Similarity=0.193 Sum_probs=98.2
Q ss_pred ceeEEeeccCCCCCCCCCCcCCCCchhHHHHHHHHHHccccEEEEEEeecCCceEEeeCCchhhccchHHHHHHHHHHHH
Q 004680 136 CHVKLYHDAHHSSSFEPPYDLCGSPGKLWEDVYKAIEGAKHLIYIAGWSLNPKMVLVRDSQTEIAHARGVQLGELLKHKA 215 (737)
Q Consensus 136 n~v~ly~dg~~~~~f~p~~~~~~~~~~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~L~r~~~~~~~~~~~~~l~~lL~~kA 215 (737)
.+|++|..-. ..-. ..+-+.+-..|.+|++-|-|..=.| .| ..-|.++|.++-
T Consensus 119 Tr~~vy~qPp--~~~~---------p~IKE~vR~~I~~A~kVIAIVMD~F-------TD---------~dIf~DLleAa~ 171 (284)
T PF07894_consen 119 TRATVYFQPP--KDGQ---------PHIKEVVRRMIQQAQKVIAIVMDVF-------TD---------VDIFCDLLEAAN 171 (284)
T ss_pred ceEEEEeCCC--CCCC---------CCHHHHHHHHHHHhcceeEEEeecc-------cc---------HHHHHHHHHHHH
Confidence 6899998652 1222 3667888999999999998885444 23 346777666666
Q ss_pred HcCCeEEEEEeCCCCCccccccccccccccHHHHHHHhcCCcEEE----EcCCCCCCCCccccCccceEEecCCCcCccc
Q 004680 216 EEGVAVRIMLWDDETSLPIIKNKGVMRTHDEDAFAYFKHTKVICK----LCPRLHHKFPTLFAHHQKTITVDARAQDSIF 291 (737)
Q Consensus 216 ~rGV~VriLvwD~~~s~~~~~~~g~~~~~~~~~~~~l~~~gv~v~----~~~r~~~~~~~~~~hHqK~vVVD~~~~~~~~ 291 (737)
+|||-|+||+ |......++.+-.-+.-+ ...+++-.|+++ ++.|. ...+-+..|+|+++||+.
T Consensus 172 kR~VpVYiLL-D~~~~~~Fl~Mc~~~~v~----~~~~~nmrVRsv~G~~y~~rs--g~k~~G~~~eKF~lvD~~------ 238 (284)
T PF07894_consen 172 KRGVPVYILL-DEQNLPHFLEMCEKLGVN----LQHLKNMRVRSVTGCTYYSRS--GKKFKGQLKEKFMLVDGD------ 238 (284)
T ss_pred hcCCcEEEEe-chhcChHHHHHHHHCCCC----hhhcCCeEEEEecCCeeecCC--CCeeeCcccceeEEEecc------
Confidence 9999999999 986654332210001111 112333333332 12222 123457899999999999
Q ss_pred ccceEEEEccccCCCCCcCCCCCcccccCCCCcccCccccccccCcccCCCCCCCCceeccceeeCHHHHHHHHHHHHHh
Q 004680 292 DREIMSFVGGLDLCDGRYDTEKHSLFQTLNSESHCFDFYQINIAGASLHKGGPREPWHDVHACITGEAAWDVLTNFEQRW 371 (737)
Q Consensus 292 ~~~~vAfvGG~nL~~~r~Dt~~H~l~~~l~~~~~~~d~~~~~~~g~~~~~~~~~~pWhDv~~~v~Gpav~dl~~~F~~rW 371 (737)
.+..|+.-+++.- .. .| +-+-..++|.+|....+.|+.-.
T Consensus 239 ----~V~~GSYSFtWs~--~~-----------~~-----------------------r~~~~~~tGq~Ve~FD~EFR~Ly 278 (284)
T PF07894_consen 239 ----KVISGSYSFTWSS--SR-----------VH-----------------------RNLVTVLTGQIVESFDEEFRELY 278 (284)
T ss_pred ----cccccccceeecc--cc-----------cc-----------------------cceeEEEeccccchHhHHHHHHH
Confidence 8899987776531 11 11 12457889999999999997754
|
Some members of this family are annotated as being potential phospholipases but no literature was found to support this. |
| >PF13918 PLDc_3: PLD-like domain | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00038 Score=68.40 Aligned_cols=69 Identities=23% Similarity=0.312 Sum_probs=53.5
Q ss_pred CCCCcCCCCchhHHHHHHHHHHccccEEEEEEeecCCceEEeeCCchhhccchHHHHHHHHHHHH-HcCCeEEEEE
Q 004680 151 EPPYDLCGSPGKLWEDVYKAIEGAKHLIYIAGWSLNPKMVLVRDSQTEIAHARGVQLGELLKHKA-EEGVAVRIML 225 (737)
Q Consensus 151 ~p~~~~~~~~~~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~L~r~~~~~~~~~~~~~l~~lL~~kA-~rGV~VriLv 225 (737)
.|+.-...|...-.++|+..|.+|+++|||+-..+.|.+..- .... ....|.++|++|| +|||+||+|+
T Consensus 71 SPp~~~~~gRT~DldAIl~~I~~A~~fI~IsVMdY~P~~~~~-~~~~-----YWP~ID~ALR~AA~~R~V~VRlLI 140 (177)
T PF13918_consen 71 SPPPFCPKGRTLDLDAILSVIDSAKKFIYISVMDYLPTSRYS-KPNR-----YWPVIDDALRRAAIERGVKVRLLI 140 (177)
T ss_pred CCcccCCCCCCcHHHHHHHHHHhHhheEEEEEeecCCeeecC-CCCC-----cchhHHHHHHHHHHHcCCeEEEEE
Confidence 454444455667789999999999999999999888855322 2222 4568999999987 8999999998
|
|
| >PLN02866 phospholipase D | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00029 Score=84.84 Aligned_cols=62 Identities=21% Similarity=0.210 Sum_probs=46.1
Q ss_pred hHHHHHHHHHHHhccceEEEeeccccCCcccccccccCCCCCccHHHHHHHHHHHHHcCCCcEEEEEec
Q 004680 431 RSIHEAYVEAIRKAERFIYIENQYFIGGCQLWEKDKHCGCRNLIPIEIALKVVSKIKAKERFAVYILIP 499 (737)
Q Consensus 431 ~sI~~ayl~aI~~A~~~IyIEnqYFi~~~~~w~~~~~~~~~n~i~~~la~~ia~~~~~g~~v~V~IvlP 499 (737)
.+...+++++|.+||++|||+.-.|.|.-+.+.+..+ -++..+...|.+|+++| |+|+|++=
T Consensus 343 ~dyF~AL~eAIe~AKesI~I~~WwlsPEiYL~Rp~~D-----~~g~RL~~lL~rKAkrG--VkVrVLLy 404 (1068)
T PLN02866 343 HAAFEAIASAIENAKSEIFITGWWLCPELYLRRPFHD-----HESSRLDSLLEAKAKQG--VQIYILLY 404 (1068)
T ss_pred HHHHHHHHHHHHhcccEEEEEEccCCceEEEEecCCC-----chHHHHHHHHHHHHHCC--CEEEEEEE
Confidence 6789999999999999999977555555444432111 14568888888887777 99999744
|
|
| >cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00052 Score=63.42 Aligned_cols=76 Identities=24% Similarity=0.467 Sum_probs=60.9
Q ss_pred CCCcEEEEEE---CCEEEeecc---CCCCCeEeEEEEEEcC--------C---C------ceEEEEEEecCC--------
Q 004680 10 GKPTYVTIKI---DNKKVAKTS---HEHDRVWNQTFQILCA--------H---P------ADATITITLKTK-------- 58 (737)
Q Consensus 10 ~~DPYv~v~l---~~~~~~rTk---~~~nP~WnE~F~~~~~--------~---~------~~l~~~V~D~d~-------- 58 (737)
..++||+|++ .+.+.-+|| ++..|.+|-+|.|+|. . . +++.|+|+..++
T Consensus 32 GVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~Ge~~sLAElLe~~eiil~vwHr~~~s~~~~~~ 111 (143)
T cd08683 32 GVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSGEAISLAELLESAEIILEVWHRNPKSAGDTIK 111 (143)
T ss_pred ccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCCccccHHHHhhcceEEeeeeecCCccccceec
Confidence 3579999996 344444777 9999999999999996 2 1 189999997654
Q ss_pred -----CcccEEEEeehhhhhcccccccceEec
Q 004680 59 -----CSVLGKIHIQALQILNEASLISGFFPL 85 (737)
Q Consensus 59 -----d~~iG~~~ipl~~l~~~g~~~d~w~~L 85 (737)
|=+||.++||+.+|+..-.-+.+|||+
T Consensus 112 ~~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi 143 (143)
T cd08683 112 IETSGDILLGTVKIPLRDLLTKRSGITGWYPI 143 (143)
T ss_pred cCcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence 458999999999999766778999985
|
C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc |
| >KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.001 Score=74.86 Aligned_cols=78 Identities=17% Similarity=0.222 Sum_probs=63.3
Q ss_pred cCCCCcEEEEEEC------CEEEe--ecc-CCCCCeEeEEEEEEcCCCc-----eEEEEEEecCC---CcccEEEEeehh
Q 004680 8 VNGKPTYVTIKID------NKKVA--KTS-HEHDRVWNQTFQILCAHPA-----DATITITLKTK---CSVLGKIHIQAL 70 (737)
Q Consensus 8 ~~~~DPYv~v~l~------~~~~~--rTk-~~~nP~WnE~F~~~~~~~~-----~l~~~V~D~d~---d~~iG~~~ipl~ 70 (737)
+|.-.|||.|.+- +++.. ||| |+--|.+||+|+|.+.+.. .|.|.|||+=. |.++|-+-++|.
T Consensus 1142 sgmFrPFVEV~ivGP~lsDKKRK~~TKtKsnnWaPKyNEtF~f~Lg~e~~Pe~YEL~~~VKDYCFAReDRvvGl~VlqL~ 1221 (1283)
T KOG1011|consen 1142 SGMFRPFVEVHIVGPHLSDKKRKFSTKTKSNNWAPKYNETFHFFLGNEGGPEHYELQFCVKDYCFAREDRVVGLAVLQLR 1221 (1283)
T ss_pred ccccccceEEEEecCcccchhhhccccccCCCcCcccCceeEEEeccCCCCceEEEEEeehhheeecccceeeeeeeehh
Confidence 3556899999983 34444 444 8999999999999986653 89999999854 999999999999
Q ss_pred hhhcccccccceEecc
Q 004680 71 QILNEASLISGFFPLE 86 (737)
Q Consensus 71 ~l~~~g~~~d~w~~L~ 86 (737)
++. ....--.|+||-
T Consensus 1222 ~va-~kGS~a~W~pLg 1236 (1283)
T KOG1011|consen 1222 SVA-DKGSCACWVPLG 1236 (1283)
T ss_pred hHh-hcCceeEeeecc
Confidence 999 445678999994
|
|
| >PF13090 PP_kinase_C: Polyphosphate kinase C-terminal domain; PDB: 2O8R_A 1XDP_A 1XDO_B | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.26 Score=53.42 Aligned_cols=135 Identities=14% Similarity=0.114 Sum_probs=79.5
Q ss_pred HHHHHHHHHccc-----cEEEEEEeecCCceEEeeCCchhhccchHHHHHHHHHHHHHcCCeEEEEEeCCCCCccccccc
Q 004680 164 WEDVYKAIEGAK-----HLIYIAGWSLNPKMVLVRDSQTEIAHARGVQLGELLKHKAEEGVAVRIMLWDDETSLPIIKNK 238 (737)
Q Consensus 164 ~~~l~~aI~~Ak-----~~I~I~~w~~~~~~~L~r~~~~~~~~~~~~~l~~lL~~kA~rGV~VriLvwD~~~s~~~~~~~ 238 (737)
|+.+.+.|++|- .+|-|+-|.+. ....+.++|.+||+.|=+|.++| .-...+.--
T Consensus 20 f~~vv~fl~eAA~DP~V~aIk~TLYR~a----------------~~S~iv~aLi~AA~nGK~Vtv~v-ELkARFDEe--- 79 (352)
T PF13090_consen 20 FDPVVDFLREAAEDPDVLAIKITLYRVA----------------SNSPIVNALIEAAENGKQVTVLV-ELKARFDEE--- 79 (352)
T ss_dssp TCHHHHHHHHHCC-TTEEEEEEEESSS-----------------TT-HHHHHHHHHHHTT-EEEEEE-STTSSSTTC---
T ss_pred cHHHHHHHHHHhcCCCccEEEEEEEecC----------------CCCHHHHHHHHHHHcCCEEEEEE-EEeccccHH---
Confidence 445777888774 47787766542 24689999999999999999998 432221100
Q ss_pred cccccccHHHHHHHhcCCcEEEEcCCCCCCCCccccCccceEEecCCCcCcccccceEEEEccccCCCCCcCCCCCcccc
Q 004680 239 GVMRTHDEDAFAYFKHTKVICKLCPRLHHKFPTLFAHHQKTITVDARAQDSIFDREIMSFVGGLDLCDGRYDTEKHSLFQ 318 (737)
Q Consensus 239 g~~~~~~~~~~~~l~~~gv~v~~~~r~~~~~~~~~~hHqK~vVVD~~~~~~~~~~~~vAfvGG~nL~~~r~Dt~~H~l~~ 318 (737)
.+-.+.+.|+.+||+|.+-- ..+--|-|+++|=.+..+ .-+-.+++|.=|.... |
T Consensus 80 -----~Ni~Wa~~Le~aGv~ViyG~-------~glKvHaK~~lI~R~e~~---~~~~Y~hlgTGNyNe~---T------- 134 (352)
T PF13090_consen 80 -----NNIHWAKRLEEAGVHVIYGV-------PGLKVHAKICLIVRREGG---GLRRYAHLGTGNYNEK---T------- 134 (352)
T ss_dssp -----CCCCCCHHHHHCT-EEEE---------TT-EE--EEEEEEEEETT---EEEEEEEEESS-SSTT---H-------
T ss_pred -----HHhHHHhhHHhcCeEEEcCC-------CChhheeeEEEEEEEeCC---cEEEEEEEcCCCcCcc---c-------
Confidence 11135577899999998632 146679999998655211 1233666665554332 0
Q ss_pred cCCCCcccCccccccccCcccCCCCCCCCceeccceeeCH-HHHHHHHHHHH
Q 004680 319 TLNSESHCFDFYQINIAGASLHKGGPREPWHDVHACITGE-AAWDVLTNFEQ 369 (737)
Q Consensus 319 ~l~~~~~~~d~~~~~~~g~~~~~~~~~~pWhDv~~~v~Gp-av~dl~~~F~~ 369 (737)
-.-+-|+.+.-.-| .+.|+...|..
T Consensus 135 --------------------------Ar~YtD~~l~Ta~~~i~~D~~~~F~~ 160 (352)
T PF13090_consen 135 --------------------------ARIYTDLSLFTADPEIGADVAKLFNY 160 (352)
T ss_dssp --------------------------CCCEEEEEEEE--HHHHHHHHHHHHH
T ss_pred --------------------------hhheecceeecCCHHHHHHHHHHHHH
Confidence 02345777776666 68899999865
|
|
| >PLN02964 phosphatidylserine decarboxylase | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.0018 Score=75.92 Aligned_cols=79 Identities=15% Similarity=0.228 Sum_probs=64.1
Q ss_pred CCcEEEEEECCEEEeecc---CCCCCeEeEEEEEEcCCCc--eEEEEEEecCC---CcccEEEEeehhhhhcccccccce
Q 004680 11 KPTYVTIKIDNKKVAKTS---HEHDRVWNQTFQILCAHPA--DATITITLKTK---CSVLGKIHIQALQILNEASLISGF 82 (737)
Q Consensus 11 ~DPYv~v~l~~~~~~rTk---~~~nP~WnE~F~~~~~~~~--~l~~~V~D~d~---d~~iG~~~ipl~~l~~~g~~~d~w 82 (737)
+|||..+-.-|.++.||. +|.||+|||...|.+-... -..|.|+|.+. ++++|.+.+++..+. ..+..+.|
T Consensus 68 ~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~n~lv~~~e~~~t~f~-~kqi~elk 146 (644)
T PLN02964 68 KDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETNRLSKNTLVGYCELDLFDFV-TQEPESAC 146 (644)
T ss_pred CCcEEEEEEecceeeeeccccccCCcccchhhceEeccCCcceEEEEEEecCCCCHHHhhhheeecHhhcc-HHHHHHHH
Confidence 699988888777888998 9999999999888874443 67999999997 999999999999988 44443444
Q ss_pred --EecccCCC
Q 004680 83 --FPLEMENG 90 (737)
Q Consensus 83 --~~L~~~~~ 90 (737)
|.+.|+++
T Consensus 147 eaF~lfD~dg 156 (644)
T PLN02964 147 ESFDLLDPSS 156 (644)
T ss_pred HHHHHHCCCC
Confidence 67777665
|
|
| >PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.049 Score=57.52 Aligned_cols=131 Identities=20% Similarity=0.242 Sum_probs=82.8
Q ss_pred hhHHHHHHHHHHHhccceEEEeeccccCCcccccccccCCCCCccHHHHHHHHHHHH-HcCCCcEEEEEecCCCCCCCCC
Q 004680 430 ERSIHEAYVEAIRKAERFIYIENQYFIGGCQLWEKDKHCGCRNLIPIEIALKVVSKI-KAKERFAVYILIPMWPEGVPTS 508 (737)
Q Consensus 430 ~~sI~~ayl~aI~~A~~~IyIEnqYFi~~~~~w~~~~~~~~~n~i~~~la~~ia~~~-~~g~~v~V~IvlP~~p~g~~~~ 508 (737)
..+|.+...++|++|++-|=|..--|+.. +|..-|.+|. +|+ |-|||++...
T Consensus 132 ~p~IKE~vR~~I~~A~kVIAIVMD~FTD~------------------dIf~DLleAa~kR~--VpVYiLLD~~------- 184 (284)
T PF07894_consen 132 QPHIKEVVRRMIQQAQKVIAIVMDVFTDV------------------DIFCDLLEAANKRG--VPVYILLDEQ------- 184 (284)
T ss_pred CCCHHHHHHHHHHHhcceeEEEeeccccH------------------HHHHHHHHHHHhcC--CcEEEEechh-------
Confidence 46899999999999999999999888753 4555566665 666 9999999963
Q ss_pred CcchhhhhhHHHhHHHHHHHHHHHHHhcCCCCCCcCceEEeeccchhhhccCCcccCCCCCCCCchhHHhhhccccceee
Q 004680 509 DPVQDILHWTRETMAMMYKLIGEAIQESGQVGHPRDFLNFFCLATREEKKSNGEFVPPYSPHPMTQYWNAQMHRRFMVYV 588 (737)
Q Consensus 509 ~~~~~i~~~~~~t~~~~~~~~~~~L~~~gv~~~p~~yl~~~~l~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~r~~~iyv 588 (737)
+.+.++ +.-.+.++... .+. +++-|-.. .-.|.- +..+.+.+-+
T Consensus 185 -~~~~Fl---------------~Mc~~~~v~~~---~~~--nmrVRsv~--G~~y~~-------------rsg~k~~G~~ 228 (284)
T PF07894_consen 185 -NLPHFL---------------EMCEKLGVNLQ---HLK--NMRVRSVT--GCTYYS-------------RSGKKFKGQL 228 (284)
T ss_pred -cChHHH---------------HHHHHCCCChh---hcC--CeEEEEec--CCeeec-------------CCCCeeeCcc
Confidence 222222 22233454321 111 11111110 011211 1122345789
Q ss_pred eeeEEEEeceEEEEeccCCCccccCCCCCcceEEEEe
Q 004680 589 HSKLMIVDDVYLLIGSANINQRSMDGQRDTEIAIGCY 625 (737)
Q Consensus 589 HSK~mIVDD~~~~IGSaNin~RS~~~~~DsEi~v~i~ 625 (737)
|.|.||||.+.++.||.-+..-|-..+ .=+...+.
T Consensus 229 ~eKF~lvD~~~V~~GSYSFtWs~~~~~--r~~~~~~t 263 (284)
T PF07894_consen 229 KEKFMLVDGDKVISGSYSFTWSSSRVH--RNLVTVLT 263 (284)
T ss_pred cceeEEEecccccccccceeecccccc--cceeEEEe
Confidence 999999999999999999988887544 43444443
|
Some members of this family are annotated as being potential phospholipases but no literature was found to support this. |
| >KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.0015 Score=77.34 Aligned_cols=64 Identities=16% Similarity=0.315 Sum_probs=55.3
Q ss_pred cCCCCcEEEEEECCEEEe-ecc---CCCCCeEeEEEEEEcCCCc--eEEEEEEecCC---CcccEEEEeehhh
Q 004680 8 VNGKPTYVTIKIDNKKVA-KTS---HEHDRVWNQTFQILCAHPA--DATITITLKTK---CSVLGKIHIQALQ 71 (737)
Q Consensus 8 ~~~~DPYv~v~l~~~~~~-rTk---~~~nP~WnE~F~~~~~~~~--~l~~~V~D~d~---d~~iG~~~ipl~~ 71 (737)
+|.+||||.|.++++.+. |+. +|+|||+++-|.+.|.-+. .+.+.|+|.|. |+.||+.+|.|+.
T Consensus 631 ng~adpYv~l~lGk~~~~d~~~yip~tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~~~~d~~iget~iDLEn 703 (1105)
T KOG1326|consen 631 NGDADPYVKLLLGKKRTLDRAHYIPNTLNPVFGKMFELECLLPFEKDLIVEVYDHDLEAQDEKIGETTIDLEN 703 (1105)
T ss_pred CCCcCceeeeeeccchhhhhhhcCcCCCCcHHHHHHHhhcccchhhcceeEEEEeecccccchhhceehhhhh
Confidence 588999999999998762 333 9999999999998886664 99999999997 9999999998874
|
|
| >PF13918 PLDc_3: PLD-like domain | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.055 Score=53.40 Aligned_cols=130 Identities=22% Similarity=0.288 Sum_probs=72.1
Q ss_pred eccceeeC-HHHHHHHHHHHHHhhhccCCCCCcCCCCCCCCCCCCC-CCCCCCCCCCCCeeeEEEeecCccchhhhccCc
Q 004680 350 DVHACITG-EAAWDVLTNFEQRWTKQCDPSLLVPISSIPNLGHKSN-IIPSSNYFNQRNWKVQVFRSIDHVSASQLAKNL 427 (737)
Q Consensus 350 Dv~~~v~G-pav~dl~~~F~~rW~~~~~~~~~~~~~~~~~~~~p~~-~~~~~~~~~~~~~~vqv~rs~~~~~~~~~p~~~ 427 (737)
.+++.+.- ..|.||.+.|...|........ |......+...-. ..|....- .++ ..+++-|. .|..-.|.+
T Consensus 7 ELGv~~~NscLA~DL~kiF~~Yw~lg~~~~i--P~~Wp~~~~t~~n~~~pl~~~~-n~~-~~~vf~Ss--SPp~~~~~g- 79 (177)
T PF13918_consen 7 ELGVVVYNSCLAQDLQKIFDTYWYLGSNSSI--PSSWPSRYSTAYNRPNPLSLHL-NGT-KSGVFFSS--SPPPFCPKG- 79 (177)
T ss_pred eeeEEecCcHHHHHHHHHHHHHHhhCCCCCC--CCchhhhhhhcccCCCCeEEEe-CCc-ceeEEecC--CCcccCCCC-
Confidence 44555554 4799999999999987654322 2211001000000 00111111 111 23555442 222222333
Q ss_pred cchhHHHHHHHHHHHhccceEEEeeccccCCc------ccccccccCCCCCccHHHHHHHHHHH-HHcCCCcEEEEEecC
Q 004680 428 TVERSIHEAYVEAIRKAERFIYIENQYFIGGC------QLWEKDKHCGCRNLIPIEIALKVVSK-IKAKERFAVYILIPM 500 (737)
Q Consensus 428 ~~~~sI~~ayl~aI~~A~~~IyIEnqYFi~~~------~~w~~~~~~~~~n~i~~~la~~ia~~-~~~g~~v~V~IvlP~ 500 (737)
...=.+|.++.|.+|++||||+=-=+.|.. ..|+ .|-.+|.+| +.|| |+|++++..
T Consensus 80 --RT~DldAIl~~I~~A~~fI~IsVMdY~P~~~~~~~~~YWP-------------~ID~ALR~AA~~R~--V~VRlLIS~ 142 (177)
T PF13918_consen 80 --RTLDLDAILSVIDSAKKFIYISVMDYLPTSRYSKPNRYWP-------------VIDDALRRAAIERG--VKVRLLISC 142 (177)
T ss_pred --CCcHHHHHHHHHHhHhheEEEEEeecCCeeecCCCCCcch-------------hHHHHHHHHHHHcC--CeEEEEEee
Confidence 344578999999999999999975554432 2353 444555444 4677 999999999
Q ss_pred CCC
Q 004680 501 WPE 503 (737)
Q Consensus 501 ~p~ 503 (737)
|..
T Consensus 143 W~h 145 (177)
T PF13918_consen 143 WKH 145 (177)
T ss_pred cCC
Confidence 864
|
|
| >KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.0026 Score=67.35 Aligned_cols=68 Identities=12% Similarity=0.098 Sum_probs=53.2
Q ss_pred cccCCCCcEEEEEECC----EEEeecc---CCCCCeEeEEEE--EEcCCCc---eEEEEEEecCC---CcccEEEEeehh
Q 004680 6 VFVNGKPTYVTIKIDN----KKVAKTS---HEHDRVWNQTFQ--ILCAHPA---DATITITLKTK---CSVLGKIHIQAL 70 (737)
Q Consensus 6 ~~~~~~DPYv~v~l~~----~~~~rTk---~~~nP~WnE~F~--~~~~~~~---~l~~~V~D~d~---d~~iG~~~ipl~ 70 (737)
++++..|||++..+.- .+..||+ |++||.|||+-. +...+.. .+++.|.|++. ++++|+..+++.
T Consensus 109 ~~~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i~~~~~~~K~~Rk~vcdn~~~~~~~sqGq~r~~lk 188 (362)
T KOG1013|consen 109 DINGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGITDDDTHLKVLRKVVCDNDKKTHNESQGQSRVSLK 188 (362)
T ss_pred hhhhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceecccccchhhhhhhheeeccCcccccccCcccchhhhh
Confidence 4567889999999942 2224666 999999998764 3344444 88899999986 899999999999
Q ss_pred hhh
Q 004680 71 QIL 73 (737)
Q Consensus 71 ~l~ 73 (737)
+|.
T Consensus 189 Kl~ 191 (362)
T KOG1013|consen 189 KLK 191 (362)
T ss_pred ccC
Confidence 988
|
|
| >KOG1265 consensus Phospholipase C [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.013 Score=68.69 Aligned_cols=91 Identities=16% Similarity=0.171 Sum_probs=69.0
Q ss_pred CCCcEEEEEECC------EEEeecc----CCCCCeEeE-EEEEE---cCCCceEEEEEEecCCCcccEEEEeehhhhhcc
Q 004680 10 GKPTYVTIKIDN------KKVAKTS----HEHDRVWNQ-TFQIL---CAHPADATITITLKTKCSVLGKIHIQALQILNE 75 (737)
Q Consensus 10 ~~DPYv~v~l~~------~~~~rTk----~~~nP~WnE-~F~~~---~~~~~~l~~~V~D~d~d~~iG~~~ipl~~l~~~ 75 (737)
+.--||.|++-| .+-.||| |+.||+||| .|.|. +.+.+.|+|.|++.. ..+||.--+|++.|. +
T Consensus 719 kvgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavyeEg-gK~ig~RIlpvd~l~-~ 796 (1189)
T KOG1265|consen 719 KVGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVYEEG-GKFIGQRILPVDGLN-A 796 (1189)
T ss_pred ccCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeeeeccC-Cceeeeeccchhccc-C
Confidence 446899999944 1224666 999999996 45444 556669999997743 799999999999999 8
Q ss_pred cccccceEecccCCCCCCCCccEEEEEecc
Q 004680 76 ASLISGFFPLEMENGKPNPDLRLRFMLWFK 105 (737)
Q Consensus 76 g~~~d~w~~L~~~~~k~~~~~~l~l~l~f~ 105 (737)
|. ..+-|..+.++|...+.|.+.+...
T Consensus 797 GY---rhv~LRse~Nqpl~lp~Lfv~i~~k 823 (1189)
T KOG1265|consen 797 GY---RHVCLRSESNQPLTLPALFVYIVLK 823 (1189)
T ss_pred cc---eeEEecCCCCCccccceeEEEEEee
Confidence 98 7888887777777666676666544
|
|
| >KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.048 Score=64.89 Aligned_cols=134 Identities=18% Similarity=0.229 Sum_probs=71.6
Q ss_pred hhHHHHHHHHHHccccEEEEEEeecCCceEEeeCCc-hhhc-cchHHHHHHHHHHHHHcC--CeEEEEE--eCCCCC---
Q 004680 161 GKLWEDVYKAIEGAKHLIYIAGWSLNPKMVLVRDSQ-TEIA-HARGVQLGELLKHKAEEG--VAVRIML--WDDETS--- 231 (737)
Q Consensus 161 ~~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~L~r~~~-~~~~-~~~~~~l~~lL~~kA~rG--V~VriLv--wD~~~s--- 231 (737)
.+.-.+-+++|++|||+|||+- .|++.... .... ...+..|.+-+.+|-++| -+|+|++ |-++..
T Consensus 565 ~SIq~AYv~~Ir~a~hFIYIEN------QfFi~ss~~~~~~~n~v~~ela~rIv~a~ra~e~frVYIVIPL~PgfEG~~~ 638 (887)
T KOG1329|consen 565 DSIQNAYVKAIRNAEHFIYIEN------QFFIGSSFNWDSVLNKVGDELALRIVKAIRAGEKFRVYIVIPLWPGFEGDDT 638 (887)
T ss_pred HHHHHHHHHHHHhccceEEEee------eeEEeeccCCCcccchHHHHHHHHHHHHHhcCCceEEEEEEeCCccccCCCC
Confidence 5667889999999999999984 22221111 0000 013455666666665554 6777776 442211
Q ss_pred ---ccc---cc-cccccccccHHHHHHHhcCCcEEE----------EcCCC--CC-CCCccccCccceEEecCCCcCccc
Q 004680 232 ---LPI---IK-NKGVMRTHDEDAFAYFKHTKVICK----------LCPRL--HH-KFPTLFAHHQKTITVDARAQDSIF 291 (737)
Q Consensus 232 ---~~~---~~-~~g~~~~~~~~~~~~l~~~gv~v~----------~~~r~--~~-~~~~~~~hHqK~vVVD~~~~~~~~ 291 (737)
.++ +. ...-|..-.....+.|+..|+.=. +..+. .. ..+.+--=|.|++|||++
T Consensus 639 p~~~svqaIl~wQyrTms~g~~sI~~~Lka~g~d~~~yi~f~~lr~~g~~e~~~~~~~~emIYVHsK~mIvDD~------ 712 (887)
T KOG1329|consen 639 PGSGSVQAILHWQYRTMSMGYKSIYKALKAVGLDPADYIDFLGLRCLGNREEQAQRLRREMIYVHSKLMIVDDE------ 712 (887)
T ss_pred CCcchHHHHHHHHHHHHhhhHHHHHHHHHHhcCCccccceeeeeeeeeccccccccceEEEEEEeeeeEEecCC------
Confidence 110 00 000011112245566776665410 00110 00 011223359999999999
Q ss_pred ccceEEEEccccCCCCCcC
Q 004680 292 DREIMSFVGGLDLCDGRYD 310 (737)
Q Consensus 292 ~~~~vAfvGG~nL~~~r~D 310 (737)
.+.+|+.||.+.-.+
T Consensus 713 ----~vIIGSANINqRSm~ 727 (887)
T KOG1329|consen 713 ----YVIIGSANINQRSML 727 (887)
T ss_pred ----EEEEeecccchhhcc
Confidence 999999999986544
|
|
| >PF11495 Regulator_TrmB: Archaeal transcriptional regulator TrmB; InterPro: IPR021586 TrmB is an alpha-glucoside sensing transcriptional regulator | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.065 Score=55.63 Aligned_cols=51 Identities=24% Similarity=0.356 Sum_probs=41.5
Q ss_pred chhHHHHHHHHHHccccEEEEEEeecCCceEEeeCCchhhccchHHHHHHHHHHHHHcCCeEEEEEeC
Q 004680 160 PGKLWEDVYKAIEGAKHLIYIAGWSLNPKMVLVRDSQTEIAHARGVQLGELLKHKAEEGVAVRIMLWD 227 (737)
Q Consensus 160 ~~~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~L~r~~~~~~~~~~~~~l~~lL~~kA~rGV~VriLvwD 227 (737)
.+...+.+.+.|++|+++|+|..|. + .-..|.+.|++|.+|||+|.++++.
T Consensus 8 ~~~I~~~i~elI~~Ae~eI~is~~~---------~--------~l~~l~~~L~~a~~rGV~V~li~~~ 58 (233)
T PF11495_consen 8 RETILERIRELIENAESEIYISIPP---------E--------FLEELRDELEEAVDRGVKVKLIVFG 58 (233)
T ss_dssp HHHHHHHHHHHHHC-SSEEEEEE-G---------G--------GHHHHHHHHHHHHHTT-EEEEEESS
T ss_pred HHHHHHHHHHHHHHhheEEEEEcCH---------H--------HHHHHHHHHHHHHHCCCEEEEEEeC
Confidence 3678899999999999999999872 1 3568999999999999999999955
|
The protein is the transcriptional repressor for gene cluster encoding trehalose/maltose ABC transporter in T.litoralis and P.furiosus []. TrmB has lost its DNA binding domain but retained its sugar recognition site. A nonreducing glucosyl residue is shared by all substrates bound to TrmB which suggests that its a common recognition motif []. ; PDB: 3QPH_A 2F5T_X. |
| >cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.077 Score=46.33 Aligned_cols=89 Identities=18% Similarity=0.264 Sum_probs=68.8
Q ss_pred cccccCCCCcEEEEEECCEEEeecc--CCCCCeEeEEEEEEcCCCceEEEEEEecCCCcccEEEEeehhhhhcccccccc
Q 004680 4 QCVFVNGKPTYVTIKIDNKKVAKTS--HEHDRVWNQTFQILCAHPADATITITLKTKCSVLGKIHIQALQILNEASLISG 81 (737)
Q Consensus 4 ~~~~~~~~DPYv~v~l~~~~~~rTk--~~~nP~WnE~F~~~~~~~~~l~~~V~D~d~d~~iG~~~ipl~~l~~~g~~~d~ 81 (737)
.+.+.|-++--+++.++++.|++|. .-.+.-|+++|.|.+.-...|+|.|+=+|..++=|-..+-|++.. .+ .
T Consensus 2 ~~~~~~~~eV~avLklDn~~VgqT~Wk~~s~q~WDQ~Fti~LdRsRELEI~VywrD~RslCav~~lrLEd~~-~~----~ 76 (98)
T cd08687 2 EVRLMGCSEVSAVLKLDNTVVGQTQWKPKSNQAWDQSFTLELERSRELEIAVYWRDWRSLCAVKFLKLEDER-HE----V 76 (98)
T ss_pred eeEEecccceEEEEEEcCeEEeeccccccccccccceeEEEeecccEEEEEEEEecchhhhhheeeEhhhhc-cc----c
Confidence 3455667889999999999999999 556889999999999555599999998888778888888888855 22 2
Q ss_pred eEecccCCCCCCCCccEEEEEec
Q 004680 82 FFPLEMENGKPNPDLRLRFMLWF 104 (737)
Q Consensus 82 w~~L~~~~~k~~~~~~l~l~l~f 104 (737)
-+++. +.|.+...+.|
T Consensus 77 ~~~le-------pqg~l~~ev~f 92 (98)
T cd08687 77 QLDME-------PQLCLVAELTF 92 (98)
T ss_pred eeccc-------cccEEEEEEEe
Confidence 33443 34567777777
|
PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct |
| >PLN02352 phospholipase D epsilon | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.045 Score=65.02 Aligned_cols=90 Identities=21% Similarity=0.244 Sum_probs=51.0
Q ss_pred cCceeEEeeccCC-CCCCCCCCcCCCCchhHHHHHHHHHHccccEEEEEEeecCCceEEeeCCch-hhccchHHHHHHHH
Q 004680 134 SNCHVKLYHDAHH-SSSFEPPYDLCGSPGKLWEDVYKAIEGAKHLIYIAGWSLNPKMVLVRDSQT-EIAHARGVQLGELL 211 (737)
Q Consensus 134 ~gn~v~ly~dg~~-~~~f~p~~~~~~~~~~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~L~r~~~~-~~~~~~~~~l~~lL 211 (737)
..+.|+++.+-.. ...++|.-. -.-.+...+.++||++|||+|||+.=-|-...+.+..+.. +--.-.+..|.+.|
T Consensus 426 ~~w~VQv~RSid~~sa~~~P~~~--~~erSIq~AYi~AIr~AqhfIYIENQYFiss~~~w~~~~~~~~~N~I~~eIa~kI 503 (758)
T PLN02352 426 RNWKVQVYRSIDHVSASHMPRNL--PVERSIHEAYVEAIRRAERFIYIENQYFIGGCHLWEKDNHCGCTNLIPIEIALKI 503 (758)
T ss_pred CcccceEEEecCccccccCCCCC--chhhHHHHHHHHHHHhhhhEEEEehhhhhccccccccccccchhcchHHHHHHHH
Confidence 4577888766421 112234100 0136789999999999999999985212111222222110 00011456777888
Q ss_pred HHHHHc--CCeEEEEE
Q 004680 212 KHKAEE--GVAVRIML 225 (737)
Q Consensus 212 ~~kA~r--GV~VriLv 225 (737)
.+|.++ +-+|+|++
T Consensus 504 ~~kir~~e~f~V~IVi 519 (758)
T PLN02352 504 ASKIRAKERFAVYILI 519 (758)
T ss_pred HHHHhCCCCCEEEEEE
Confidence 777654 78888887
|
|
| >COG3886 Predicted HKD family nuclease [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.23 Score=49.17 Aligned_cols=140 Identities=19% Similarity=0.245 Sum_probs=94.8
Q ss_pred hhHHHHHHHHHHccccEEEEEEeecCCceEEeeCCchhhccchHHHHHHHHHHHHHcCCeEEEEEeCCCCCccccccccc
Q 004680 161 GKLWEDVYKAIEGAKHLIYIAGWSLNPKMVLVRDSQTEIAHARGVQLGELLKHKAEEGVAVRIMLWDDETSLPIIKNKGV 240 (737)
Q Consensus 161 ~~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~L~r~~~~~~~~~~~~~l~~lL~~kA~rGV~VriLvwD~~~s~~~~~~~g~ 240 (737)
+.....+...|+.|++...+..++- .+ .-.-+.+.|..+...||++|+|- ++.-+.
T Consensus 38 e~il~~Li~~l~k~~ef~IsVaFit--------~s-------G~sll~~~L~d~~~Kgvkgkilt-s~Ylnf-------- 93 (198)
T COG3886 38 EKILPRLIDELEKADEFEISVAFIT--------ES-------GLSLLFDLLLDLVNKGVKGKILT-SDYLNF-------- 93 (198)
T ss_pred hhHHHHHHHHHhcCCeEEEEEEEee--------Cc-------cHHHHHHHHHHHhcCCceEEEec-ccccCc--------
Confidence 5678899999999999888876643 22 24578889999999999999996 543222
Q ss_pred cccccHHHHHHHhcCCcEEEEcCCCCCCCCccccCccceEEecCCCcCcccccceEEEEccccCCCCCcCCCCCcccccC
Q 004680 241 MRTHDEDAFAYFKHTKVICKLCPRLHHKFPTLFAHHQKTITVDARAQDSIFDREIMSFVGGLDLCDGRYDTEKHSLFQTL 320 (737)
Q Consensus 241 ~~~~~~~~~~~l~~~gv~v~~~~r~~~~~~~~~~hHqK~vVVD~~~~~~~~~~~~vAfvGG~nL~~~r~Dt~~H~l~~~l 320 (737)
|++...++.+.-.+|+|+++.- -...+|-|-.|.-.. ....|++|+.||++.-.-. .
T Consensus 94 --TdP~al~~Ll~~~nve~r~~~~------~~~~fH~KgYiFe~~-------~~~taiiGSsNlt~sALt~-n------- 150 (198)
T COG3886 94 --TDPVALRKLLMLKNVELRVSTI------GSANFHTKGYIFEHN-------TGITAIIGSSNLTDSALTV-N------- 150 (198)
T ss_pred --cCHHHHHHHHhhhccceEEEec------CccccccceeEEEec-------ceEEEEEccchhhhhhccc-C-------
Confidence 2223344445556688876431 135678888886544 2338999999999863211 0
Q ss_pred CCCcccCccccccccCcccCCCCCCCCcee-ccceeeCHHHHHHHHHHHHHhh
Q 004680 321 NSESHCFDFYQINIAGASLHKGGPREPWHD-VHACITGEAAWDVLTNFEQRWT 372 (737)
Q Consensus 321 ~~~~~~~d~~~~~~~g~~~~~~~~~~pWhD-v~~~v~Gpav~dl~~~F~~rW~ 372 (737)
..|-- +...-.|..|..+...|+..|.
T Consensus 151 -------------------------~Ewn~k~s~~~~g~i~~~~k~~f~r~~~ 178 (198)
T COG3886 151 -------------------------EEWNLKVSSSKNGDIVKEVKVTFERQFQ 178 (198)
T ss_pred -------------------------HHHHhhhccccccchHHHHHHHHHHHHH
Confidence 12211 1222358899999999999998
|
|
| >KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.0097 Score=63.09 Aligned_cols=74 Identities=11% Similarity=0.094 Sum_probs=54.8
Q ss_pred cCCCCcEEEEEECC----EEEeecc---CCCCCeEeEEEEEEcCCC--c--eEEEEEEecCC---CcccEEEEeehhhhh
Q 004680 8 VNGKPTYVTIKIDN----KKVAKTS---HEHDRVWNQTFQILCAHP--A--DATITITLKTK---CSVLGKIHIQALQIL 73 (737)
Q Consensus 8 ~~~~DPYv~v~l~~----~~~~rTk---~~~nP~WnE~F~~~~~~~--~--~l~~~V~D~d~---d~~iG~~~ipl~~l~ 73 (737)
+|-+||||+..+.. +-..||+ +|.||++||+|.+.+.+. + .+.|+|+|++. ++.+|-...-...
T Consensus 251 ng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~kv~lsvgd~~~G~s~d~~GG~~~g~~r-- 328 (362)
T KOG1013|consen 251 NGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYKKVALSVGDYDIGKSNDSIGGSMLGGYR-- 328 (362)
T ss_pred CCCCCccceeecCCCcchhhcccCcchhccCCccccccccccCCccchhcceEEEeecccCCCcCccCCCcccccccc--
Confidence 47789999999842 2223555 999999999999888665 3 99999999998 8888877664443
Q ss_pred cccccccceEe
Q 004680 74 NEASLISGFFP 84 (737)
Q Consensus 74 ~~g~~~d~w~~ 84 (737)
.+...+.|+.
T Consensus 329 -r~~v~~h~gr 338 (362)
T KOG1013|consen 329 -RGEVHKHWGR 338 (362)
T ss_pred -cchhhcCccc
Confidence 3445555543
|
|
| >COG0855 Ppk Polyphosphate kinase [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.80 E-value=5.3 Score=46.67 Aligned_cols=93 Identities=18% Similarity=0.151 Sum_probs=62.8
Q ss_pred hhHHHHHHHHHHcccc-----EEEEEEeecCCceEEeeCCchhhccchHHHHHHHHHHHHHcCCeEEEEEeCCCCCcccc
Q 004680 161 GKLWEDVYKAIEGAKH-----LIYIAGWSLNPKMVLVRDSQTEIAHARGVQLGELLKHKAEEGVAVRIMLWDDETSLPII 235 (737)
Q Consensus 161 ~~~~~~l~~aI~~Ak~-----~I~I~~w~~~~~~~L~r~~~~~~~~~~~~~l~~lL~~kA~rGV~VriLvwD~~~s~~~~ 235 (737)
=+.|+.+.+.|++|-. .|-++ |.|-+ ....|.++|.+||+.|-+|-+|| .-. ..+
T Consensus 351 YeSF~~Vv~fl~qAA~DP~VLAIKqT---------LYRt~-------~dSpIV~ALi~AA~nGKqVtvlV-ELk---ARF 410 (696)
T COG0855 351 YESFEPVVEFLRQAAADPDVLAIKQT---------LYRTS-------KDSPIVRALIDAAENGKQVTVLV-ELK---ARF 410 (696)
T ss_pred hhhhHHHHHHHHHhhcCCCeEEEEEE---------EEecC-------CCCHHHHHHHHHHHcCCeEEEEE-EEh---hhc
Confidence 4567888999998853 23333 33432 24689999999999999999998 221 111
Q ss_pred ccccccccccHHHHHHHhcCCcEEEEcCCCCCCCCccccCccceEEecCC
Q 004680 236 KNKGVMRTHDEDAFAYFKHTKVICKLCPRLHHKFPTLFAHHQKTITVDAR 285 (737)
Q Consensus 236 ~~~g~~~~~~~~~~~~l~~~gv~v~~~~r~~~~~~~~~~hHqK~vVVD~~ 285 (737)
.. ..+-.+.+.|..+||+|++-- ..+--|-|+++|=.+
T Consensus 411 DE-----E~NI~WAk~LE~AGvhVvyG~-------~glKtHAKm~lVvRr 448 (696)
T COG0855 411 DE-----EANIHWAKRLERAGVHVVYGV-------VGLKTHAKMLLVVRR 448 (696)
T ss_pred Ch-----hhhhHHHHHHHhCCcEEEecc-------cceeeeeeEEEEEEe
Confidence 10 112257788999999998632 346779999888555
|
|
| >KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.78 E-value=0.016 Score=70.00 Aligned_cols=77 Identities=14% Similarity=0.196 Sum_probs=60.8
Q ss_pred CCCCcEEEEEEC----CEEEeecc---CCCCCeEeEEEE---EEcCCCc--eEEEEEEecCC---CcccEEEEeehhhhh
Q 004680 9 NGKPTYVTIKID----NKKVAKTS---HEHDRVWNQTFQ---ILCAHPA--DATITITLKTK---CSVLGKIHIQALQIL 73 (737)
Q Consensus 9 ~~~DPYv~v~l~----~~~~~rTk---~~~nP~WnE~F~---~~~~~~~--~l~~~V~D~d~---d~~iG~~~ipl~~l~ 73 (737)
.-.||||+..|- +...-||| +|.||.+||... ++..... .|.++|+-.+. +.++|.+.|||.++.
T Consensus 1543 ~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls~~~~~en~~lg~v~i~L~~~~ 1622 (1639)
T KOG0905|consen 1543 QDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLSNGGLLENVFLGGVNIPLLKVD 1622 (1639)
T ss_pred CCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeeecccceeeeeeeeeeecchhhcc
Confidence 356999999993 22224777 999999999885 4443333 89999998876 999999999999998
Q ss_pred cccccccceEecc
Q 004680 74 NEASLISGFFPLE 86 (737)
Q Consensus 74 ~~g~~~d~w~~L~ 86 (737)
..++.-.||+|-
T Consensus 1623 -l~kE~~~Wy~lg 1634 (1639)
T KOG0905|consen 1623 -LLKESVGWYNLG 1634 (1639)
T ss_pred -hhhhhcceeecc
Confidence 677777999984
|
|
| >PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen [] | Back alignment and domain information |
|---|
Probab=94.51 E-value=0.29 Score=46.45 Aligned_cols=98 Identities=20% Similarity=0.264 Sum_probs=67.4
Q ss_pred CcEEEEEE--CCEE--Eeecc----CCCCCeEeEEEEEEc-----CC---Cc--eEEEEEEecCC---CcccEEEEeehh
Q 004680 12 PTYVTIKI--DNKK--VAKTS----HEHDRVWNQTFQILC-----AH---PA--DATITITLKTK---CSVLGKIHIQAL 70 (737)
Q Consensus 12 DPYv~v~l--~~~~--~~rTk----~~~nP~WnE~F~~~~-----~~---~~--~l~~~V~D~d~---d~~iG~~~ipl~ 70 (737)
+-.|.|.+ ++.. .++|. ....=.|||+|.+.| .. .. .+.|+|..... ...+|.+.|.|.
T Consensus 23 ~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~v~~~~~~~~k~~lG~~~inLa 102 (143)
T PF10358_consen 23 NGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFSVFEVDGSGKKKVLGKVSINLA 102 (143)
T ss_pred CCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEEEEEecCCCccceEEEEEEEHH
Confidence 33444444 4444 35555 566678999998775 11 22 88999988743 359999999999
Q ss_pred hhhcc-cccccceEecccCCCCCCCCccEEEEEeccCCCcccc
Q 004680 71 QILNE-ASLISGFFPLEMENGKPNPDLRLRFMLWFKPAAYEPT 112 (737)
Q Consensus 71 ~l~~~-g~~~d~w~~L~~~~~k~~~~~~l~l~l~f~~~~~~~~ 112 (737)
+.... ......-++|... +...+.|+|++++.++..+++
T Consensus 103 ey~~~~~~~~~~~~~l~~~---~~~~a~L~isi~~~~~~~~~~ 142 (143)
T PF10358_consen 103 EYANEDEEPITVRLLLKKC---KKSNATLSISISLSELREDPD 142 (143)
T ss_pred HhhCcCCCcEEEEEeCccC---CCCCcEEEEEEEEEECccCCC
Confidence 99932 3566677777643 235679999999998877664
|
Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1). |
| >PLN03008 Phospholipase D delta | Back alignment and domain information |
|---|
Probab=94.31 E-value=0.23 Score=59.59 Aligned_cols=65 Identities=17% Similarity=0.169 Sum_probs=39.2
Q ss_pred hhHHHHHHHHHHccccEEEEEEeecCCceEEeeCCch-hhccchHHHHHHHHHHHHH--cCCeEEEEE
Q 004680 161 GKLWEDVYKAIEGAKHLIYIAGWSLNPKMVLVRDSQT-EIAHARGVQLGELLKHKAE--EGVAVRIML 225 (737)
Q Consensus 161 ~~~~~~l~~aI~~Ak~~I~I~~w~~~~~~~L~r~~~~-~~~~~~~~~l~~lL~~kA~--rGV~VriLv 225 (737)
.++..+.+++|++|||+|||+.=-|-...+.+..... ....-.+..|...|.+|.+ ++-+|+|++
T Consensus 566 ~SIq~aYi~aIr~A~hFIYIENQYFiss~~~w~~~~~~~~~n~I~~eia~kI~~ki~~~e~f~V~IVi 633 (868)
T PLN03008 566 KSIQTAYIQTIRSAQHFIYIENQYFLGSSYAWPSYRDAGADNLIPMELALKIVSKIRAKERFAVYVVI 633 (868)
T ss_pred hhHHHHHHHHHHhhccEEEEehhhhhccccccccccccccccchhHHHHHHHHHHHhCCCCCEEEEEE
Confidence 5678999999999999999985222111211111000 0001135667777777755 478898887
|
|
| >PLN02270 phospholipase D alpha | Back alignment and domain information |
|---|
Probab=93.86 E-value=0.22 Score=59.58 Aligned_cols=138 Identities=17% Similarity=0.218 Sum_probs=73.9
Q ss_pred hhHHHHHHHHHHccccEEEEEE-eecCCceEEeeCC-chhh-cc---chHHHHHHHHHHHHH--cCCeEEEEEeCCCC-C
Q 004680 161 GKLWEDVYKAIEGAKHLIYIAG-WSLNPKMVLVRDS-QTEI-AH---ARGVQLGELLKHKAE--EGVAVRIMLWDDET-S 231 (737)
Q Consensus 161 ~~~~~~l~~aI~~Ak~~I~I~~-w~~~~~~~L~r~~-~~~~-~~---~~~~~l~~lL~~kA~--rGV~VriLvwD~~~-s 231 (737)
.+...+.++||++||++|||+. |-++.. +-+..+ -.+. .+ -.+..|...|.+|.+ ++-+|+|++ -... .
T Consensus 498 rsI~~aYi~AI~~A~~~IYIENQYF~sss-~~w~~~~~~~~~~~~~nlIp~el~~kI~~ri~~~e~f~VyIVi-P~~peG 575 (808)
T PLN02270 498 RSIQDAYIHAIRRAKDFIYIENQYFLGSS-FAWSADGIKPEDINALHLIPKELSLKIVSKIEAGEKFTVYVVV-PMWPEG 575 (808)
T ss_pred hHHHHHHHHHHHhhhhEEEeehhhhhhhh-hhhcccccccccccccccchHHHHHHHHHHHhCCCCCEEEEEE-CCCCCC
Confidence 5788999999999999999985 322221 111100 0000 00 024566666766654 478999887 2211 1
Q ss_pred cc-------ccc-cccccccccHHHHHHHhcCCcE------E-EEcCCC----------CCCC--------------Ccc
Q 004680 232 LP-------IIK-NKGVMRTHDEDAFAYFKHTKVI------C-KLCPRL----------HHKF--------------PTL 272 (737)
Q Consensus 232 ~~-------~~~-~~g~~~~~~~~~~~~l~~~gv~------v-~~~~r~----------~~~~--------------~~~ 272 (737)
.. ++. ..--|..--....+.|+..|+. + ++|.++ |... +..
T Consensus 576 ~~e~~~vq~il~wq~~TM~~~~~~I~~~Lk~~g~~~dp~dyL~ff~L~nre~~~~g~~~P~~~~~~~~~~~~aq~~rr~~ 655 (808)
T PLN02270 576 IPESGSVQAILDWQRRTMEMMYKDVIQALRAKGLEEDPRNYLTFFCLGNREVKKSGEYEPSEKPEPDTDYIRAQEARRFM 655 (808)
T ss_pred CcccchHHHHHHHHHHHHHHHHHHHHHHHHHcCccCCccceEEEEeccccccccCcccCCccCCcccchhhhhhhcccee
Confidence 10 000 0000111112345566666542 1 123211 1100 112
Q ss_pred ccCccceEEecCCCcCcccccceEEEEccccCCCCCcC
Q 004680 273 FAHHQKTITVDARAQDSIFDREIMSFVGGLDLCDGRYD 310 (737)
Q Consensus 273 ~~hHqK~vVVD~~~~~~~~~~~~vAfvGG~nL~~~r~D 310 (737)
---|.|++|||++ .+.+|+.||...-++
T Consensus 656 I~vH~K~~ivDd~----------~~~iGSaN~n~rS~~ 683 (808)
T PLN02270 656 IYVHTKMMIVDDE----------YIIIGSANINQRSMD 683 (808)
T ss_pred EEEeeeEEEEcCC----------EEEEecccccccccc
Confidence 3469999999999 999999999886554
|
|
| >cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus) | Back alignment and domain information |
|---|
Probab=92.86 E-value=0.029 Score=48.58 Aligned_cols=66 Identities=12% Similarity=0.140 Sum_probs=49.6
Q ss_pred EECCEEEeecc---CCCCCeEeEEEEEEcCCCc----eEEEEEEecCC-CcccEEEEeehhhhhcccccccceEec
Q 004680 18 KIDNKKVAKTS---HEHDRVWNQTFQILCAHPA----DATITITLKTK-CSVLGKIHIQALQILNEASLISGFFPL 85 (737)
Q Consensus 18 ~l~~~~~~rTk---~~~nP~WnE~F~~~~~~~~----~l~~~V~D~d~-d~~iG~~~ipl~~l~~~g~~~d~w~~L 85 (737)
.+.+..-.||. ...||+++|||.|.++-.. .|.|.|...-+ .+.||.+.+.+.++- .++.+-|.++
T Consensus 30 tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~~~~RKe~iG~~sL~l~s~g--eeE~~HW~e~ 103 (103)
T cd08684 30 TLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQTQTPRKRTIGECSLSLRTLS--TQETDHWLEI 103 (103)
T ss_pred ecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeeccCCccceeeEEEeecccCC--HHHhhhhhcC
Confidence 34554446776 8899999999988865443 78888877655 999999999999875 5566667543
|
Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos |
| >cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=92.05 E-value=0.45 Score=46.50 Aligned_cols=63 Identities=21% Similarity=0.323 Sum_probs=46.9
Q ss_pred CCCCcEEEEEE--CCEEEe---ecc---CCCCCeEeEEEEEEc--CCCc---eEEEEEEecCC---CcccEEEEeehhh
Q 004680 9 NGKPTYVTIKI--DNKKVA---KTS---HEHDRVWNQTFQILC--AHPA---DATITITLKTK---CSVLGKIHIQALQ 71 (737)
Q Consensus 9 ~~~DPYv~v~l--~~~~~~---rTk---~~~nP~WnE~F~~~~--~~~~---~l~~~V~D~d~---d~~iG~~~ipl~~ 71 (737)
..+|-||++.| +++.+. +|+ -+..+.|||...|++ .+.. .|.|+|+|.+. ...||.+++||=+
T Consensus 28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd 106 (159)
T cd08397 28 PNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFN 106 (159)
T ss_pred CCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeEC
Confidence 46899999987 555443 555 356688999888775 3332 99999999764 5789999888754
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty |
| >PF13090 PP_kinase_C: Polyphosphate kinase C-terminal domain; PDB: 2O8R_A 1XDP_A 1XDO_B | Back alignment and domain information |
|---|
Probab=91.80 E-value=0.48 Score=51.41 Aligned_cols=92 Identities=17% Similarity=0.324 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHcCCCcEEEEEecCCCCCCCCCCcchhhhhhHHHhHHHHHHHHHHHHHhcCCCCCCcCceEEeeccchhh
Q 004680 477 EIALKVVSKIKAKERFAVYILIPMWPEGVPTSDPVQDILHWTRETMAMMYKLIGEAIQESGQVGHPRDFLNFFCLATREE 556 (737)
Q Consensus 477 ~la~~ia~~~~~g~~v~V~IvlP~~p~g~~~~~~~~~i~~~~~~t~~~~~~~~~~~L~~~gv~~~p~~yl~~~~l~~~~~ 556 (737)
.++.+|.+|+++| -+|.+++-...-. +..++ ++| .+.|+++|+++ +|++
T Consensus 51 ~iv~aLi~AA~nG--K~Vtv~vELkARF--DEe~N---i~W------------a~~Le~aGv~V-------iyG~----- 99 (352)
T PF13090_consen 51 PIVNALIEAAENG--KQVTVLVELKARF--DEENN---IHW------------AKRLEEAGVHV-------IYGV----- 99 (352)
T ss_dssp HHHHHHHHHHHTT---EEEEEESTTSSS--TTCCC---CCC------------CHHHHHCT-EE-------EE-------
T ss_pred HHHHHHHHHHHcC--CEEEEEEEEeccc--cHHHH---hHH------------HhhHHhcCeEE-------EcCC-----
Confidence 6889999999998 5677777765422 22221 224 47899999975 2321
Q ss_pred hccCCcccCCCCCCCCchhHHhhhccccceeeeeeEEEEe-------ceEEEEeccCCCccccCCCCCcceEEEEecCC
Q 004680 557 KKSNGEFVPPYSPHPMTQYWNAQMHRRFMVYVHSKLMIVD-------DVYLLIGSANINQRSMDGQRDTEIAIGCYQLP 628 (737)
Q Consensus 557 ~~~~~~~~~~~~p~~~~~~~~~~~~r~~~iyvHSK~mIVD-------D~~~~IGSaNin~RS~~~~~DsEi~v~i~d~~ 628 (737)
| ..-||||+++|= -+|+-+|+-|+|...-..- |.+++..-+++
T Consensus 100 --------~-------------------glKvHaK~~lI~R~e~~~~~~Y~hlgTGNyNe~TAr~Y--tD~~l~Ta~~~ 149 (352)
T PF13090_consen 100 --------P-------------------GLKVHAKICLIVRREGGGLRRYAHLGTGNYNEKTARIY--TDLSLFTADPE 149 (352)
T ss_dssp --------T-------------------T-EE--EEEEEEEEETTEEEEEEEEESS-SSTTHCCCE--EEEEEEE--HH
T ss_pred --------C-------------------ChhheeeEEEEEEEeCCcEEEEEEEcCCCcCccchhhe--ecceeecCCHH
Confidence 1 257999999984 2899999999999987544 67777654443
|
|
| >cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins | Back alignment and domain information |
|---|
Probab=91.12 E-value=0.44 Score=47.85 Aligned_cols=60 Identities=10% Similarity=0.160 Sum_probs=38.7
Q ss_pred cccccCCCCcEEEEEECCEEEeecc---CCCCCeEeEEEEEEcCCC---c-eEEEEEEec------CC-CcccEEEEeeh
Q 004680 4 QCVFVNGKPTYVTIKIDNKKVAKTS---HEHDRVWNQTFQILCAHP---A-DATITITLK------TK-CSVLGKIHIQA 69 (737)
Q Consensus 4 ~~~~~~~~DPYv~v~l~~~~~~rTk---~~~nP~WnE~F~~~~~~~---~-~l~~~V~D~------d~-d~~iG~~~ipl 69 (737)
+|+..|+..|.++ -.||- ...+|.|||++.+.+.-. . .|.|+++.- |. ...+|-+.+||
T Consensus 41 ~~i~~gsg~~~~s-------e~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL 113 (196)
T cd08694 41 GVISLGAGEEPID-------EYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKL 113 (196)
T ss_pred eeEEcCCCCCcce-------eEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEee
Confidence 3444555555443 24555 789999999998876443 2 999999542 22 35666666666
Q ss_pred h
Q 004680 70 L 70 (737)
Q Consensus 70 ~ 70 (737)
=
T Consensus 114 ~ 114 (196)
T cd08694 114 M 114 (196)
T ss_pred e
Confidence 3
|
Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.64 E-value=0.36 Score=52.84 Aligned_cols=92 Identities=14% Similarity=0.233 Sum_probs=70.7
Q ss_pred CcEEEEEE---C-CEEEeecc---CCCCCeEeEEEEEEcCC---C---------c-eEEEEEEecC---C-CcccEEEEe
Q 004680 12 PTYVTIKI---D-NKKVAKTS---HEHDRVWNQTFQILCAH---P---------A-DATITITLKT---K-CSVLGKIHI 67 (737)
Q Consensus 12 DPYv~v~l---~-~~~~~rTk---~~~nP~WnE~F~~~~~~---~---------~-~l~~~V~D~d---~-d~~iG~~~i 67 (737)
|-||.+.+ + .....||. +|..|+++|.|-+.+.. . . .+.|.|+.+. + |.++|.+.|
T Consensus 389 d~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g~kfeifhkggf~rSdkl~gt~ni 468 (523)
T KOG3837|consen 389 DQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLGKKFEIFHKGGFNRSDKLTGTGNI 468 (523)
T ss_pred HhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhcCeeEEEeeccccccccceeceeee
Confidence 56666665 2 23334666 99999999999999866 1 1 7889999875 3 999999999
Q ss_pred ehhhhhcccccccceEecccCCCCCCCCccEEEEEeccC
Q 004680 68 QALQILNEASLISGFFPLEMENGKPNPDLRLRFMLWFKP 106 (737)
Q Consensus 68 pl~~l~~~g~~~d~w~~L~~~~~k~~~~~~l~l~l~f~~ 106 (737)
-|+.|. .--++...++|.| |++.-+|+|.+.++.+.
T Consensus 469 kle~Le-n~cei~e~~~l~D--GRK~vGGkLevKvRiR~ 504 (523)
T KOG3837|consen 469 KLEILE-NMCEICEYLPLKD--GRKAVGGKLEVKVRIRQ 504 (523)
T ss_pred eehhhh-cccchhhceeccc--cccccCCeeEEEEEEec
Confidence 999998 6667888999975 65554678888888764
|
|
| >KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.11 E-value=0.18 Score=58.78 Aligned_cols=93 Identities=14% Similarity=0.039 Sum_probs=67.3
Q ss_pred CCCcEEEEEECCEEEeec--c-CCCCCeEeEEEEEEcCCCceEEEEEEecCC---CcccEEEEeehhhhhcccccccceE
Q 004680 10 GKPTYVTIKIDNKKVAKT--S-HEHDRVWNQTFQILCAHPADATITITLKTK---CSVLGKIHIQALQILNEASLISGFF 83 (737)
Q Consensus 10 ~~DPYv~v~l~~~~~~rT--k-~~~nP~WnE~F~~~~~~~~~l~~~V~D~d~---d~~iG~~~ipl~~l~~~g~~~d~w~ 83 (737)
..|||+.|.+.-+..+.+ + .+.+|.|||+|++.+.....+.|.|+.+.. +.+...+++-.++++......+.|+
T Consensus 27 al~~y~~v~vk~~~~~~~~~~~~~~~~~~~~~F~~~v~~~~~~~i~v~~~~~~~~~~~~a~~~~~~e~~k~~~~~~~~w~ 106 (694)
T KOG0694|consen 27 ALQPYLAVELKVKQGAENMTKVELRIPELRETFHVEVVAGGAKNIIVLLKSPDPKALSEAQLSLQEESQKLLALEQRLWV 106 (694)
T ss_pred hhhhhheeccceeecccccCCCCCCCchhhhheeeeeecCCceEEEEEecCCcchhhHHHhHHHHHHHHHHHhhhhhhcc
Confidence 458999999987666433 3 999999999999996544488888888743 7777777887787774334567898
Q ss_pred ecccCCCCCCCCccEEEEEeccCCCc
Q 004680 84 PLEMENGKPNPDLRLRFMLWFKPAAY 109 (737)
Q Consensus 84 ~L~~~~~k~~~~~~l~l~l~f~~~~~ 109 (737)
.+. +. |++...+.+.-..+
T Consensus 107 ~~~-~~------g~~~~~~~~~~~~~ 125 (694)
T KOG0694|consen 107 LIE-EL------GTLLKPAALTGTLE 125 (694)
T ss_pred ccc-cc------cceeeeecccCcCC
Confidence 864 44 45666666655444
|
|
| >KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=89.94 E-value=0.19 Score=60.43 Aligned_cols=131 Identities=9% Similarity=-0.004 Sum_probs=82.4
Q ss_pred cCCCCcEEEEEECCEEEeecc---CCCCCeEeEEEEEE---c---CCC-----ceEEEEEEecCC---CcccEEEEeehh
Q 004680 8 VNGKPTYVTIKIDNKKVAKTS---HEHDRVWNQTFQIL---C---AHP-----ADATITITLKTK---CSVLGKIHIQAL 70 (737)
Q Consensus 8 ~~~~DPYv~v~l~~~~~~rTk---~~~nP~WnE~F~~~---~---~~~-----~~l~~~V~D~d~---d~~iG~~~ipl~ 70 (737)
.+-+|||+.+.+-+... .|- +|+||.||++..|. + +|. ..++|+|+|.|+ ++++|+......
T Consensus 224 ~~~sdp~a~v~f~~qs~-~T~~v~~tl~ptwdq~~~f~~~ei~ge~~~~~~~ppi~v~e~yd~dr~g~~ef~gr~~~~p~ 302 (1105)
T KOG1326|consen 224 DDESDPDAAVEFCGQSK-ETEVVPGTLNPTWDQTIIFDEVEIYGEAHLVLKNPPIRVFEVYDLDRSGINEFKGRKKQRPY 302 (1105)
T ss_pred ccCCCchhhhhcccccc-eeEeecCcCCCCccceeeccceeecCccchhhcCCCeEEEEeehhhhhchHHhhcccccceE
Confidence 46789999999976433 333 99999999987544 1 222 288999999998 999999887444
Q ss_pred hhhcccccccceEecccCCCCCCCCccEEEEEeccCCCccccccccccCCCcccCCCCCcccccCceeEEeecc
Q 004680 71 QILNEASLISGFFPLEMENGKPNPDLRLRFMLWFKPAAYEPTWGKIISNGEFQGLRNASFPQRSNCHVKLYHDA 144 (737)
Q Consensus 71 ~l~~~g~~~d~w~~L~~~~~k~~~~~~l~l~l~f~~~~~~~~w~~g~~~~~~~~~~~~~~p~~~gn~v~ly~dg 144 (737)
-.. . ..--.|+++.. .+.. .|.+.+..........-.|-.-+...-|.+||-.-.|.+.-.+++++-=|
T Consensus 303 V~~-~-~p~lkw~p~~r-g~~l--~gd~l~a~eliq~~~~i~~p~~~~~~~~~~vp~~iRp~~q~~~~evl~wg 371 (1105)
T KOG1326|consen 303 VMV-Q-CPALKWVPTMR-GAFL--DGDVLIAAELIQIGKPIPQPPPQREIIFSLVPKKIRPKTQIGKAELLMWG 371 (1105)
T ss_pred EEe-c-CCccceEEeec-cccc--ccchhHHHHHHhhcCCCCCCCcccccceeccccCCCcceeeeeeehhhhh
Confidence 333 1 23458999974 3332 23344333222222212233344445577788777777777777765544
|
|
| >PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain | Back alignment and domain information |
|---|
Probab=89.64 E-value=0.93 Score=44.66 Aligned_cols=63 Identities=14% Similarity=0.205 Sum_probs=52.9
Q ss_pred CCcEEEEEECCEEEeecc-CCCC----CeEeEEEEEEcCCCc-eEEEEEEecCC--CcccEEEEeehhhhh
Q 004680 11 KPTYVTIKIDNKKVAKTS-HEHD----RVWNQTFQILCAHPA-DATITITLKTK--CSVLGKIHIQALQIL 73 (737)
Q Consensus 11 ~DPYv~v~l~~~~~~rTk-~~~n----P~WnE~F~~~~~~~~-~l~~~V~D~d~--d~~iG~~~ipl~~l~ 73 (737)
..-|++|.++++.|++|+ ..++ =..||.|.|.+...- .|.++|+.... +..|+++.||+-...
T Consensus 37 ~~~~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~~Pesi~l~i~E~~~~~~~~la~v~vpvP~~~ 107 (168)
T PF15625_consen 37 TRYYIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQITRWPESIKLEIYEKSGLSDRLLAEVFVPVPGST 107 (168)
T ss_pred eeEEEEEEECCEEEEeeeeEecCCCeEEeccCEEEEEEecCCCEEEEEEEEccCccceEEEEEEeeCCCCc
Confidence 356999999999999999 4444 457899999997766 99999999885 999999999987655
|
|
| >PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A | Back alignment and domain information |
|---|
Probab=89.45 E-value=0.8 Score=45.73 Aligned_cols=43 Identities=12% Similarity=0.170 Sum_probs=27.8
Q ss_pred CCCCCeEeEEEEEEcCCC---c-eEEEEEEecCC------CcccEEEEeehhh
Q 004680 29 HEHDRVWNQTFQILCAHP---A-DATITITLKTK------CSVLGKIHIQALQ 71 (737)
Q Consensus 29 ~~~nP~WnE~F~~~~~~~---~-~l~~~V~D~d~------d~~iG~~~ipl~~ 71 (737)
++.+|.|+|+|.|.+.-. . .|.|++++-.. +..+|-+.+||-+
T Consensus 68 h~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 68 HNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp T-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred cCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence 789999999998876443 2 99999987543 2577777777765
|
|
| >cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=88.35 E-value=1.2 Score=43.35 Aligned_cols=63 Identities=14% Similarity=0.141 Sum_probs=44.7
Q ss_pred CCCCcEEEEEE--CCEEEe---ecc--CCCCCeEeEEEEEEc--CCCc---eEEEEEEecCC-------CcccEEEEeeh
Q 004680 9 NGKPTYVTIKI--DNKKVA---KTS--HEHDRVWNQTFQILC--AHPA---DATITITLKTK-------CSVLGKIHIQA 69 (737)
Q Consensus 9 ~~~DPYv~v~l--~~~~~~---rTk--~~~nP~WnE~F~~~~--~~~~---~l~~~V~D~d~-------d~~iG~~~ipl 69 (737)
..+|-||++.| |++.+. .|+ ...++.|||...|++ .+.. .|.|+|++... ...||.++++|
T Consensus 24 ~~~~l~V~v~l~~g~~~L~~pv~T~~v~~~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~~~~~~~k~~~~~iG~~ni~L 103 (158)
T cd08398 24 DIDKIYVRTGIYHGGEPLCDNVNTQRVPCSNPRWNEWLDYDIYIPDLPRSARLCLSICSVKGRKGAKEEHCPLAWGNINL 103 (158)
T ss_pred CcCeEEEEEEEEECCEEccCeeEecccCCCCCccceeEEcccchhcCChhheEEEEEEEEecccCCCCceEEEEEEEEEE
Confidence 45688999977 665553 454 557899999888765 4442 99999998642 24588888777
Q ss_pred hh
Q 004680 70 LQ 71 (737)
Q Consensus 70 ~~ 71 (737)
=+
T Consensus 104 Fd 105 (158)
T cd08398 104 FD 105 (158)
T ss_pred EC
Confidence 54
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c |
| >COG0855 Ppk Polyphosphate kinase [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=86.22 E-value=2 Score=50.07 Aligned_cols=92 Identities=15% Similarity=0.271 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHcCCCcEEEEEecCCCCCCCCCCcchhhhhhHHHhHHHHHHHHHHHHHhcCCCCCCcCceEEeeccchhh
Q 004680 477 EIALKVVSKIKAKERFAVYILIPMWPEGVPTSDPVQDILHWTRETMAMMYKLIGEAIQESGQVGHPRDFLNFFCLATREE 556 (737)
Q Consensus 477 ~la~~ia~~~~~g~~v~V~IvlP~~p~g~~~~~~~~~i~~~~~~t~~~~~~~~~~~L~~~gv~~~p~~yl~~~~l~~~~~ 556 (737)
.|..++.+|+++|+ +|.+|+-...- .+..++ ++ ++++|.++|+++ +|+
T Consensus 385 pIV~ALi~AA~nGK--qVtvlVELkAR--FDEE~N---I~------------WAk~LE~AGvhV-------vyG------ 432 (696)
T COG0855 385 PIVRALIDAAENGK--QVTVLVELKAR--FDEEAN---IH------------WAKRLERAGVHV-------VYG------ 432 (696)
T ss_pred HHHHHHHHHHHcCC--eEEEEEEEhhh--cChhhh---hH------------HHHHHHhCCcEE-------Eec------
Confidence 57889999999995 45555554321 111111 12 568899999975 332
Q ss_pred hccCCcccCCCCCCCCchhHHhhhccccceeeeeeEEEEe----c---eEEEEeccCCCccccCCCCCcceEEEEecCC
Q 004680 557 KKSNGEFVPPYSPHPMTQYWNAQMHRRFMVYVHSKLMIVD----D---VYLLIGSANINQRSMDGQRDTEIAIGCYQLP 628 (737)
Q Consensus 557 ~~~~~~~~~~~~p~~~~~~~~~~~~r~~~iyvHSK~mIVD----D---~~~~IGSaNin~RS~~~~~DsEi~v~i~d~~ 628 (737)
.. ..-+|||+++|= | +|+=+|+-|.|..+-..- |.+++..-+++
T Consensus 433 ------~~--------------------glKtHAKm~lVvRrE~~~lrrY~HlGTGNYn~~TAriY--TD~sl~Tad~~ 483 (696)
T COG0855 433 ------VV--------------------GLKTHAKMLLVVRREGGKLRRYVHLGTGNYNPKTARLY--TDLSLLTADPE 483 (696)
T ss_pred ------cc--------------------ceeeeeeEEEEEEecCCcEEEEEEecCCCCCccceeee--eechhccCCHH
Confidence 11 156999999984 2 689999999999987544 66666544444
|
|
| >KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.04 E-value=0.46 Score=51.59 Aligned_cols=79 Identities=18% Similarity=0.169 Sum_probs=58.9
Q ss_pred CCCcEEEEEE--CCEEE--eecc---CCCCCeEeEEEEEEcCCCc-eEEEEEEe-cCC---CcccEEEEeehhhhhcccc
Q 004680 10 GKPTYVTIKI--DNKKV--AKTS---HEHDRVWNQTFQILCAHPA-DATITITL-KTK---CSVLGKIHIQALQILNEAS 77 (737)
Q Consensus 10 ~~DPYv~v~l--~~~~~--~rTk---~~~nP~WnE~F~~~~~~~~-~l~~~V~D-~d~---d~~iG~~~ipl~~l~~~g~ 77 (737)
.++|||+|++ ++.-+ .+|| +|.+|.+-+...|.-..+. .|.++|+- +-+ +.|+|.++|-+.+|. .+.
T Consensus 290 ~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~sp~~k~Lq~tv~gdygRmd~k~fmg~aqi~l~eL~-ls~ 368 (405)
T KOG2060|consen 290 LPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQSPPGKYLQGTVWGDYGRMDHKSFMGVAQIMLDELN-LSS 368 (405)
T ss_pred ccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccCCCccEEEEEEeccccccchHHHhhHHHHHhhhhc-ccc
Confidence 5699999999 23222 3676 7777765566666655555 89999984 433 899999999999998 555
Q ss_pred -cccceEecccCC
Q 004680 78 -LISGFFPLEMEN 89 (737)
Q Consensus 78 -~~d~w~~L~~~~ 89 (737)
.+-.|++|....
T Consensus 369 ~~~igwyKlfgss 381 (405)
T KOG2060|consen 369 SPVIGWYKLFGSS 381 (405)
T ss_pred ccceeeeeccCCc
Confidence 889999997644
|
|
| >PF09565 RE_NgoFVII: NgoFVII restriction endonuclease; InterPro: IPR019065 There are four classes of restriction endonucleases: types I, II,III and IV | Back alignment and domain information |
|---|
Probab=85.50 E-value=4.8 Score=43.30 Aligned_cols=41 Identities=32% Similarity=0.338 Sum_probs=28.5
Q ss_pred eeeeeeEEEE----eceEEEEeccCCCc-cccCCCCCcceEEEEecCC
Q 004680 586 VYVHSKLMIV----DDVYLLIGSANINQ-RSMDGQRDTEIAIGCYQLP 628 (737)
Q Consensus 586 iyvHSK~mIV----DD~~~~IGSaNin~-RS~~~~~DsEi~v~i~d~~ 628 (737)
+-+|+|+.+. =+..++|||||+.. -.+. .+=.| +++..|+.
T Consensus 79 ~~~HgKlY~f~k~g~~~~a~IGSANfS~~~~~~-~~~~E-~~v~~D~~ 124 (296)
T PF09565_consen 79 PPYHGKLYIFSKNGKPFRAYIGSANFSQINGFT-RRQYE-AMVTCDPN 124 (296)
T ss_pred CCcccEEEEEecCCCceEEEEeecccccccccc-cccee-EEEecChH
Confidence 5799999999 25689999999987 2221 23378 55545543
|
All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This domain is found in NgoFVII restriction endonuclease, which recognises GCSGC but cleavage site is unknown. It is also found as the C-terminal domain of the res subunit of some type III restriction endonucleases. |
| >PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2 | Back alignment and domain information |
|---|
Probab=85.17 E-value=2.1 Score=40.76 Aligned_cols=61 Identities=13% Similarity=0.189 Sum_probs=40.9
Q ss_pred cEEEEEE--CCEEEe----ecc----CCCCCeEeEEEEEE--cCCCc---eEEEEEEecCC---C----cccEEEEeehh
Q 004680 13 TYVTIKI--DNKKVA----KTS----HEHDRVWNQTFQIL--CAHPA---DATITITLKTK---C----SVLGKIHIQAL 70 (737)
Q Consensus 13 PYv~v~l--~~~~~~----rTk----~~~nP~WnE~F~~~--~~~~~---~l~~~V~D~d~---d----~~iG~~~ipl~ 70 (737)
-||++.| |++.+. +|+ +..+|.|||...|+ +.+.. .|.|+|+..+. . ..||.+.+||=
T Consensus 4 ~~V~~~ly~g~~~L~~p~~~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lF 83 (142)
T PF00792_consen 4 LYVECQLYHGGEPLCNPVQSTSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLF 83 (142)
T ss_dssp EEEEEEEEETTEESS-EEEE-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB
T ss_pred EEEEEEEEECCEEeecCeeeccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeE
Confidence 4666666 665443 566 23699999987776 44442 99999998765 3 58999999876
Q ss_pred hhh
Q 004680 71 QIL 73 (737)
Q Consensus 71 ~l~ 73 (737)
+-.
T Consensus 84 d~~ 86 (142)
T PF00792_consen 84 DYR 86 (142)
T ss_dssp -TT
T ss_pred CCC
Confidence 543
|
7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A .... |
| >cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins | Back alignment and domain information |
|---|
Probab=85.00 E-value=1.6 Score=43.85 Aligned_cols=59 Identities=10% Similarity=0.222 Sum_probs=36.1
Q ss_pred cccccCCCCcEEEEEECCEEEeecc---CCCCCeEeEEEEEEcCCC---c-eEEEEEEecCC-----CcccEEEEeeh
Q 004680 4 QCVFVNGKPTYVTIKIDNKKVAKTS---HEHDRVWNQTFQILCAHP---A-DATITITLKTK-----CSVLGKIHIQA 69 (737)
Q Consensus 4 ~~~~~~~~DPYv~v~l~~~~~~rTk---~~~nP~WnE~F~~~~~~~---~-~l~~~V~D~d~-----d~~iG~~~ipl 69 (737)
+||..+...|-++ -.+|- .+.+|.|||++.|.++-. . .|.|+++.-.. ...+|-+.+||
T Consensus 41 ~cI~~~~g~~~~s-------e~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL 111 (189)
T cd08695 41 DCISLGSGEPPCS-------EYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPL 111 (189)
T ss_pred CCEEcCCCCCccc-------eEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEee
Confidence 4555554444332 12444 789999999998887444 2 89997765322 24455555554
|
Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int |
| >cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=81.36 E-value=3.2 Score=40.18 Aligned_cols=63 Identities=13% Similarity=0.241 Sum_probs=43.9
Q ss_pred CCCcEEEEEE--CCEEEe---ecc--C-CCCCeEeEEEEEEc--CCCc---eEEEEEEecCC-----CcccEEEEeehhh
Q 004680 10 GKPTYVTIKI--DNKKVA---KTS--H-EHDRVWNQTFQILC--AHPA---DATITITLKTK-----CSVLGKIHIQALQ 71 (737)
Q Consensus 10 ~~DPYv~v~l--~~~~~~---rTk--~-~~nP~WnE~F~~~~--~~~~---~l~~~V~D~d~-----d~~iG~~~ipl~~ 71 (737)
.++-||++.| |++... .|+ . ..++.|||...|++ .+.. .|.|+|++.+. ...||.+.+||=+
T Consensus 27 ~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~~~~~~~~~~~iG~~~~~lFd 106 (156)
T cd08380 27 DLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAVSEPGSKKEVPLGWVNVPLFD 106 (156)
T ss_pred ceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEEecCCCCcceEEEEEeEEeEc
Confidence 4566777766 554332 444 3 37899999988774 4442 99999998764 3789999988765
Q ss_pred h
Q 004680 72 I 72 (737)
Q Consensus 72 l 72 (737)
-
T Consensus 107 ~ 107 (156)
T cd08380 107 Y 107 (156)
T ss_pred c
Confidence 3
|
C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm |
| >cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=80.42 E-value=5.2 Score=39.63 Aligned_cols=49 Identities=20% Similarity=0.254 Sum_probs=34.4
Q ss_pred CCCCcEEEEEE--CCEEEe---ecc---CCCCCeEeEEEEEEc--CCCc---eEEEEEEecC
Q 004680 9 NGKPTYVTIKI--DNKKVA---KTS---HEHDRVWNQTFQILC--AHPA---DATITITLKT 57 (737)
Q Consensus 9 ~~~DPYv~v~l--~~~~~~---rTk---~~~nP~WnE~F~~~~--~~~~---~l~~~V~D~d 57 (737)
..++-||++.| |++.+. .|+ -..++.|||.+.|++ .+.. .|.|+|++..
T Consensus 25 ~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~~ 86 (173)
T cd08693 25 RTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEVS 86 (173)
T ss_pred CCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEec
Confidence 34677788766 666654 555 246799999888764 4443 9999999864
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1v0w_A Phospholipase D; hydrolase, substrate SOAK, dibutyrylphosphatidylcholine, DIC4PC; 1.35A {Streptomyces SP} SCOP: d.136.1.2 d.136.1.2 PDB: 1v0s_A 1v0r_A 1v0t_A 1v0v_A 1v0u_A 1v0y_A* 1f0i_A 2ze4_A* 2ze9_A* Length = 506 | Back alignment and structure |
|---|
Score = 84.0 bits (207), Expect = 5e-17
Identities = 59/498 (11%), Positives = 117/498 (23%), Gaps = 138/498 (27%)
Query: 165 EDVYKAIEGAKHLIYIAGWSLNPKMVLVRDSQTEIAHARGVQLGELLKHKAEEG--VAVR 222
+ + I A + I+ + + + LK A +G + VR
Sbjct: 69 AKMTENIGNATRTVDIST------LAPFPNGAF------QDAIVAGLKESAAKGNKLKVR 116
Query: 223 IMLWDDETSLPIIKNKGVMRTHDEDAFAYFKHTKVICKLCPRLHHKFPTLFA-HHQKTIT 281
I++ P+ + + ++ A L T F+ +H K +
Sbjct: 117 ILVGA----APVYHMNVIPSKYRDELTAKLGKAAENITLNVASMTTSKTAFSWNHSKILV 172
Query: 282 VDARAQDSIFDREIMSFVGGLDLCDGRYDTEKHSLFQTLNSESHCFDFYQINIAGASLHK 341
VD ++ + GG++ Y
Sbjct: 173 VDGQS----------ALTGGINSWKDDY-------------------------------- 190
Query: 342 GGPREPWHDVHACITGEAAWDVLTNFEQRW-------------------TKQCDPSLLVP 382
P DV +TG AA + W C P++
Sbjct: 191 LDTTHPVSDVDLALTGPAAGSAGRYLDTLWTWTCQNKSNIASVWFAASGNAGCMPTMHKD 250
Query: 383 ISSIPN--LGHKSNIIPSSNYFNQRNWKVQVFRSIDHVSASQLA------------KNLT 428
+ + G+ I ++ + D +AS ++
Sbjct: 251 TNPKASPATGNVPVIAVGGLGVGIKDVDPKSTFRPDLPTASDTKCVVGLHDNTNADRDYD 310
Query: 429 VERSIHEAYVEAIRKAERFIYIENQ----YFIGGCQLWEKDKHCGCRNLIPIEIALKVVS 484
A + A+ I I Q + + AL
Sbjct: 311 TVNPEESALRALVASAKGHIEISQQDLNATCPPLPRYDIRLYD-----------ALA--- 356
Query: 485 KIKAKERFAVYILIPMWPEGVPTSDPVQDILHWTRETMAMMYKLIGEAIQESGQVGHPRD 544
K V I++ + + L +G +
Sbjct: 357 -AKMAAGVKVRIVVSDPANRG---AVGSGGYSQIKSLSEISDTLRNRLANITGGQQAAKT 412
Query: 545 FLNFFCLATREEKKSNGEFVPPYSPHPMTQYWNAQMHRRFMVYVHSKLMIVDDVYLLIGS 604
+ + + + P ++ + H KL+ VD IGS
Sbjct: 413 AM------------CSNLQLATFRSSPNGKWAD-----GHPYAQHHKLVSVDSSTFYIGS 455
Query: 605 ANINQRSMDGQRDTEIAI 622
N+ + +
Sbjct: 456 KNLYPSWL-----QDFGY 468
|
| >3hsi_A Phosphatidylserine synthase; CDP- diacylglycerol--serine O-phosphatidyltransferase, structura genomics, PSI-2; HET: MSE; 2.20A {Haemophilus influenzae} Length = 458 | Back alignment and structure |
|---|
Score = 57.3 bits (138), Expect = 9e-09
Identities = 66/520 (12%), Positives = 134/520 (25%), Gaps = 150/520 (28%)
Query: 122 FQGLRNA-SFPQRSNCHVKLYHDAHHSSSFEPPYDLCGSPGKLWEDVYKAIEGAKHLIYI 180
Q L N ++ ++ + + + I AK IY+
Sbjct: 13 EQNLNNLPFLALQAE-QIEFLGS----------------SAEFKTQIIELIRNAKKRIYV 55
Query: 181 AGWSLNPKMVLVRDSQTEIAHARGVQLGELLKHKAEEGVAVRI-MLWDDETSLPIIKNKG 239
+L + + G ++ + + +E + + +L D + +N
Sbjct: 56 T--ALY-----WQKDEA------GQEILDEIYRVKQENPHLDVKVLIDWHRAQ---RNLL 99
Query: 240 VMRTHDEDAFAYFKH-TKVICKLCPRLHHKFPTLFAH-----HQKTITVDARAQDSIFDR 293
+A Y + P + P H K +FD
Sbjct: 100 GAEKSATNADWYCEQRQTYQLPDDPNMFFGVPINTREVFGVLHVKGF---------VFDD 150
Query: 294 EIMSFVGGLDLCDGRYDTEKHSLFQTLNSESHCFDFYQINIAGASLHKGGPREPWHDVHA 353
++ + G +I LH+ +D +
Sbjct: 151 TVL-YSGA-------------------------------SINNVYLHQFEK--YRYDRYQ 176
Query: 354 CITGEAAWDVLTNFEQRW------TKQCDPSLLVPISSIPNLGH--KSNIIPSSNYFNQR 405
IT D + NF + D + I + ++ + Y +
Sbjct: 177 KITHAELADSMVNFINDYLLDFSAVYPLDVTNRPRTKEIRGNIRAYRKDLAQNGEYSLKS 236
Query: 406 NWKVQVFRSIDHVSASQLAKNLTVERSIHEAYVEAIRKAERFIYIENQYFIGGCQLWEKD 465
K+ + +S S L +++ + + ++ + I YF
Sbjct: 237 AVKLP-----NVLSVSPLFGLGASGNELNQVIEDLFLQVQKKLVICTPYF---------- 281
Query: 466 KHCGCRNLIPIEIALKVVSKIKAKERFAVYILIPMWPEGVPTSDPVQDILHWTRETMAMM 525
+ + V I++ P Q + +
Sbjct: 282 --------NFPRTLQHKI-ATLLENGKRVEIIVGDKVANDFYIPPEQPFKMAG--ALPYL 330
Query: 526 YKLIGEAIQESGQVGHPRDFLNFFCLATREEKKSNGEFVPPYSPHPMTQYWNAQMHRRFM 585
Y+ L FC + +S V + T
Sbjct: 331 YESN----------------LRRFCEKFETQIESGQLVVRLWRDGDNT------------ 362
Query: 586 VYVHSKLMIVDDVYLLIGSANINQRSMDGQRDTEIAIGCY 625
H K + VDD Y+L+ N+N R+ + D E + Y
Sbjct: 363 --YHLKGVWVDDRYILLTGNNLNPRAW--RLDAENGLLIY 398
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 57.2 bits (137), Expect = 2e-08
Identities = 74/467 (15%), Positives = 128/467 (27%), Gaps = 141/467 (30%)
Query: 313 KHSL-FQTLNSES--HCFDFYQINIAGASLHKGGPREPWHDVHACITGEAAWDVLTNFEQ 369
K + S DF I W ++ C + E VL ++
Sbjct: 163 KTWVALDVCLSYKVQCKMDF---KIF------------WLNLKNCNSPE---TVLEMLQK 204
Query: 370 RWTKQCDPSLLVPISSIPNLGHKSNIIPS--SNYFNQRNWKVQVFRS---IDHVSASQLA 424
Q DP+ N+ + + I + + ++ + +V ++
Sbjct: 205 LLY-QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE----NCLLVLLNVQNAKAW 259
Query: 425 KNLTVERSIHEAYVEAIRKAERFIYIENQYFIGGCQ--LWEKDKH------CGCRNLIPI 476
F C+ L + K I +
Sbjct: 260 N----------------------------AFNLSCKILLTTRFKQVTDFLSAATTTHISL 291
Query: 477 EIALKVVSKIKAKERFAVYILIPMW--PEGVPTSDP---------VQD-ILHWTRETMAM 524
+ ++ + K Y+ P V T++P ++D + W
Sbjct: 292 DHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVN 351
Query: 525 MYKLIGEAIQESGQVGHPRDFLNFFCLATREEKKSNGEFV--PPYSPHP---MTQYWNA- 578
KL I+ S LN L E +K PP + P ++ W
Sbjct: 352 CDKLT-TIIESS---------LN--VLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDV 399
Query: 579 ----------QMHRRFMVYVHSKLMI--VDDVYLLIGSANINQRSMDGQRDTEIAIGCYQ 626
++H+ +V K + +YL + N+ ++ + Y
Sbjct: 400 IKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALH-----RSIVDHYN 454
Query: 627 LPKNDDQNS---EDISAYRLSLWYEHTG-------LAE--GLFREP----ESLECVQKIC 670
+PK D + + Y +Y H G E LFR LE QKI
Sbjct: 455 IPKTFDSDDLIPPYLDQY----FYSHIGHHLKNIEHPERMTLFRMVFLDFRFLE--QKIR 508
Query: 671 SIGDEMWNIYSGEEVVDMDGVHLVTYPVNVTP-DGLIEDLVDEGGNF 716
WN L Y + D E LV+ +F
Sbjct: 509 HDS-TAWNASGSILNTLQQ---LKFYKPYICDNDPKYERLVNAILDF 551
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 48.3 bits (114), Expect = 1e-05
Identities = 54/414 (13%), Positives = 112/414 (27%), Gaps = 150/414 (36%)
Query: 362 DVL-TNFE---QRWTKQC-DPSLLVPISSIPNLGHKSNIIPSSNYFNQRN--WK-VQVFR 413
+VL N++ + PS+ + Y QR+ + QVF
Sbjct: 85 EVLRINYKFLMSPIKTEQRQPSM-----------------MTRMYIEQRDRLYNDNQVFA 127
Query: 414 SIDHVSASQLAKNLTVERSIHEAYVEAIRKAERFIYIENQYFIGGCQLWEKDKHCGCRNL 473
+VS Q L +A +E + + + I + G K
Sbjct: 128 K-YNVSRLQPYLKL------RQALLEL--RPAKNVLI---DGVLGS-----GKTW----- 165
Query: 474 IPIEIALKVVSKIKAKERFAVYILIPMWPEGVPTSDPVQDILHWTRETMAMMYKLIGEAI 533
+AL V K + + + W + +
Sbjct: 166 ----VALDVCLSYKVQCKM---------DFKI----------FW----LNL--------- 189
Query: 534 QESGQVGHPRDF---LNFFCLATREEKKSNGEFVPPYSPHPMTQYWNAQMHRRFMV---Y 587
P L S + + + RR + Y
Sbjct: 190 ---KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI---KLRIHSIQAELRRLLKSKPY 243
Query: 588 VHSKLMIVDDVYLLIGSANINQRSMDGQ-------RDTEIAIGCYQLPKNDDQNSEDISA 640
+ L+++ +V +A + + R ++ D ++ +
Sbjct: 244 ENC-LLVLLNVQ----NAKA-WNAFNLSCKILLTTRFKQVT---------DFLSAA--TT 286
Query: 641 YRLSLWYEHTGL----AEGLFR-----EPESL--ECVQ----KICSIGDEM------WNI 679
+SL + L + L P+ L E + ++ I + + W+
Sbjct: 287 THISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDN 346
Query: 680 YSGEEVVDMDGV-HLVTYPVNVTPDGLIEDLVDEGGNFP-DTKTPVKGKRSKVL 731
+ + V+ D + ++ +NV + D FP P + +L
Sbjct: 347 W---KHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIP-----TILL 392
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 47.2 bits (111), Expect = 2e-05
Identities = 87/588 (14%), Positives = 158/588 (26%), Gaps = 183/588 (31%)
Query: 86 EMEN--GKPNPDLRLRFMLW------------FKPAAYEPTWGKIISNGEFQGLRNASFP 131
E+++ + + W F + ++S + + R S
Sbjct: 50 EIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTE-QRQPSMM 108
Query: 132 QR--SNCHVKLYHDAHHSSSFEPPYDLCGSPGKLWEDVYKAIEGAKHLIYI-------AG 182
R +LY+D + F Y++ + + +A+ + + +G
Sbjct: 109 TRMYIEQRDRLYND---NQVF-AKYNVS-RLQPYLK-LRQALLELRPAKNVLIDGVLGSG 162
Query: 183 WSLNPKMVLV----RDSQTEIAHARGV---QLGELLKHKAEEGVAVRIMLWD-------D 228
K + + + + L + E V ML +
Sbjct: 163 -----KTWVALDVCLSYKVQCKMDFKIFWLNLKN--CNSPET---VLEMLQKLLYQIDPN 212
Query: 229 ETSLPIIKNKGVMRTHD-EDAFAYF----------------KHTKVI------CKLCPRL 265
TS + +R H + ++ K CK
Sbjct: 213 WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCK----- 267
Query: 266 HHKFPTLFAHHQKTITVDARAQDSIFDREIMSFVGGLDLCDGRYDTEKHSLF-------- 317
L K +T D + + + L E SL
Sbjct: 268 -----ILLTTRFKQVT-DFLSAATTTHISLDHHSMTL------TPDEVKSLLLKYLDCRP 315
Query: 318 QTLNSESHCFDFYQINIAGASLHKGGPR-EPWHDV-----HACITGEAAWDVLTNFEQRW 371
Q L E + +++I S+ G + W V I E++ +VL E R
Sbjct: 316 QDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTII--ESSLNVLEPAEYR- 372
Query: 372 TKQCDPSLLVPISSIPNLGHKSNIIPSSNYFNQRNWKVQVFRSIDHVSASQLAKNLTVER 431
+ +S P S IP+ W + + V ++L K VE+
Sbjct: 373 ------KMFDRLSVFP----PSAHIPTILL--SLIWFDVIKSDVMVV-VNKLHKYSLVEK 419
Query: 432 -------SIHEAYVEAIRKAE-------RFI--Y-IENQYFIGGCQLWEKDK----HCGC 470
SI Y+E K E + Y I + D+ H G
Sbjct: 420 QPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIG- 478
Query: 471 RNLIPIEIALKVVSK---------IKAKERFAVYILIPMWPEGVPTSDPVQDILHWTRET 521
+L IE ++ ++ K R W + +Q +
Sbjct: 479 HHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDST----AWNASGSILNTLQQL------- 527
Query: 522 MAMMYKLIGEAIQESGQVGHP------RDFLNFFCLATREEKKSNGEF 563
YK I ++ P L+F L EE ++
Sbjct: 528 --KFYK---PYICDN----DPKYERLVNAILDF--LPKIEENLICSKY 564
|
| >1byr_A Protein (endonuclease); phosphodiesterase,; 2.00A {Salmonella typhimurium} SCOP: d.136.1.1 PDB: 1bys_A Length = 155 | Back alignment and structure |
|---|
Score = 41.3 bits (97), Expect = 2e-04
Identities = 10/36 (27%), Positives = 18/36 (50%)
Query: 587 YVHSKLMIVDDVYLLIGSANINQRSMDGQRDTEIAI 622
H K++IVD+V + GS N + + + + I
Sbjct: 92 IQHDKVIIVDNVTVETGSFNFTKAAETKNSENAVVI 127
|
| >1byr_A Protein (endonuclease); phosphodiesterase,; 2.00A {Salmonella typhimurium} SCOP: d.136.1.1 PDB: 1bys_A Length = 155 | Back alignment and structure |
|---|
Score = 39.7 bits (93), Expect = 8e-04
Identities = 23/123 (18%), Positives = 38/123 (30%), Gaps = 31/123 (25%)
Query: 151 EPPYDLCGSPGKLWEDVY-KAIEGAKHLIYIAGWSLNPKMVLVRDSQTEIAHARGVQLGE 209
EP + SP + AI+ AK I + +S +I A
Sbjct: 2 EPSVQVGYSPEGSARVLVLSAIDSAKTSIRMMAYSFTAP---------DIMKA------- 45
Query: 210 LLKHKAEEGVAVRIMLWDDETSLPIIKNKGVMRTHDEDAFAYFKHTKV---ICKLCPRLH 266
L + GV V+I++ D+ + A Y ++ + P H
Sbjct: 46 -LVAAKKRGVDVKIVI-DERGN---------TGRASIAAMNYIANSGIPLRTDSNFPIQH 94
Query: 267 HKF 269
K
Sbjct: 95 DKV 97
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 737 | ||||
| d1v0wa1 | 258 | d.136.1.2 (A:6-263) Phospholipase D {Streptomyces | 3e-11 | |
| d1v0wa1 | 258 | d.136.1.2 (A:6-263) Phospholipase D {Streptomyces | 3e-07 | |
| d1v0wa2 | 246 | d.136.1.2 (A:264-514) Phospholipase D {Streptomyce | 2e-10 | |
| d1v0wa2 | 246 | d.136.1.2 (A:264-514) Phospholipase D {Streptomyce | 0.004 |
| >d1v0wa1 d.136.1.2 (A:6-263) Phospholipase D {Streptomyces sp. [TaxId: 1931]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Phospholipase D/nuclease superfamily: Phospholipase D/nuclease family: Phospholipase D domain: Phospholipase D species: Streptomyces sp. [TaxId: 1931]
Score = 62.4 bits (151), Expect = 3e-11
Identities = 35/223 (15%), Positives = 61/223 (27%), Gaps = 61/223 (27%)
Query: 163 LWEDVYKAIEGAKHLIYIAGWSLNPKMVLVRDSQTEIAHARGVQLGELLKHKAEEG--VA 220
L + + I A + I+ + P + LK A +G +
Sbjct: 65 LLAKMTENIGNATRTVDISTLAPFPNGAFQD------------AIVAGLKESAAKGNKLK 112
Query: 221 VRIMLWDDETSLPIIKNKGVMRTHDEDAFAYFKHTKVICKLCPRLHHKFPTLFA-HHQKT 279
VRI++ + P+ + + ++ A L T F+ +H K
Sbjct: 113 VRILVG----AAPVYHMNVIPSKYRDELTAKLGKAAENITLNVASMTTSKTAFSWNHSKI 168
Query: 280 ITVDARAQDSIFDREIMSFVGGLDLCDGRYDTEKHSLFQTLNSESHCFDFYQINIAGASL 339
+ VD + + GG++ Y H
Sbjct: 169 LVVDGQ----------SALTGGINSWKDDYLDTTH------------------------- 193
Query: 340 HKGGPREPWHDVHACITGEAAWDVLTNFEQRWTKQCDPSLLVP 382
P DV +TG AA + WT C +
Sbjct: 194 -------PVSDVDLALTGPAAGSAGRYLDTLWTWTCQNKSNIA 229
|
| >d1v0wa1 d.136.1.2 (A:6-263) Phospholipase D {Streptomyces sp. [TaxId: 1931]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Phospholipase D/nuclease superfamily: Phospholipase D/nuclease family: Phospholipase D domain: Phospholipase D species: Streptomyces sp. [TaxId: 1931]
Score = 50.1 bits (119), Expect = 3e-07
Identities = 22/196 (11%), Positives = 45/196 (22%), Gaps = 60/196 (30%)
Query: 431 RSIHEAYVEAIRKAERFIYIENQYFIGGCQLWEKDKHCGCRNLIPIEIALKVVSKIKAKE 490
+ + E I A R + I + I +
Sbjct: 63 KRLLAKMTENIGNATRTVDISTLAPFPNGAFQD-------------AIVAGLKESAAKGN 109
Query: 491 RFAVYILIPMWPEGVPTSDPVQDILHWTRETMAMMYKLIGEAIQESGQVGHPRDFLNFFC 550
+ V IL+ P + + + + ++
Sbjct: 110 KLKVRILVGAAPV------------YHMNVIPSKYRDELTAKLGKA-------------- 143
Query: 551 LATREEKKSNGEFVPPYSPHPMTQYWNAQMHRRFMVYVHSKLMIVDDVYLLIGSANINQR 610
E + T + + HSK+++VD L G N +
Sbjct: 144 ----------AENITLNVASMTTS-------KTAFSWNHSKILVVDGQSALTGGINSWKD 186
Query: 611 SMDGQ----RDTEIAI 622
D ++A+
Sbjct: 187 DYLDTTHPVSDVDLAL 202
|
| >d1v0wa2 d.136.1.2 (A:264-514) Phospholipase D {Streptomyces sp. [TaxId: 1931]} Length = 246 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Phospholipase D/nuclease superfamily: Phospholipase D/nuclease family: Phospholipase D domain: Phospholipase D species: Streptomyces sp. [TaxId: 1931]
Score = 59.4 bits (143), Expect = 2e-10
Identities = 27/178 (15%), Positives = 40/178 (22%), Gaps = 31/178 (17%)
Query: 435 EAYVEAIRKAERFIYIENQYFIGGCQLWEKDKHCGCRNLIPIEIALKVVSKIKAKERFAV 494
A + A+ I I Q C R I + AL K V
Sbjct: 57 SALRALVASAKGHIEISQQDLNATCPP-------LPRYDIRLYDALAA----KMAAGVKV 105
Query: 495 YILIPMWPEGVPTSDPVQDILHWTRETMAMMYKLIGEAIQESGQVGHPRDFLNFFCLATR 554
I++ K + E N T
Sbjct: 106 RIVVSDPANRG-----------AVGSGGYSQIKSLSEISDT---------LRNRLANITG 145
Query: 555 EEKKSNGEFVPPYSPHPMTQYWNAQMHRRFMVYVHSKLMIVDDVYLLIGSANINQRSM 612
++ + N + H KL+ VD IGS N+ +
Sbjct: 146 GQQAAKTAMCSNLQLATFRSSPNGKWADGHPYAQHHKLVSVDSSTFYIGSKNLYPSWL 203
|
| >d1v0wa2 d.136.1.2 (A:264-514) Phospholipase D {Streptomyces sp. [TaxId: 1931]} Length = 246 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Phospholipase D/nuclease superfamily: Phospholipase D/nuclease family: Phospholipase D domain: Phospholipase D species: Streptomyces sp. [TaxId: 1931]
Score = 37.1 bits (85), Expect = 0.004
Identities = 26/170 (15%), Positives = 43/170 (25%), Gaps = 40/170 (23%)
Query: 164 WEDVYKA-IEGAKHLIYIAGWSLNPKMVLVRDSQTEIAHARGVQLGELLKHKAEEGVAVR 222
E +A + AK I I+ LN + + A L K GV VR
Sbjct: 55 EESALRALVASAKGHIEISQQDLNATCPPLPRYDIRLYDA--------LAAKMAAGVKVR 106
Query: 223 IML-------WDDETSLPIIK---NKGV-----MRTHDEDAFAYFKHTKVICKLCPRLHH 267
I++ IK + A +L
Sbjct: 107 IVVSDPANRGAVGSGGYSQIKSLSEISDTLRNRLANITGGQQAAKTAMCSNLQLATFRSS 166
Query: 268 KFPTLFAH-----HQKTITVDARAQDSIFDREIMSFVGGLDLCDGRYDTE 312
H K ++VD+ ++G +L + +
Sbjct: 167 PNGKWADGHPYAQHHKLVSVDSS----------TFYIGSKNL-YPSWLQD 205
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 737 | |||
| d1v0wa1 | 258 | Phospholipase D {Streptomyces sp. [TaxId: 1931]} | 99.97 | |
| d1v0wa2 | 246 | Phospholipase D {Streptomyces sp. [TaxId: 1931]} | 99.85 | |
| d1gmia_ | 136 | Domain from protein kinase C epsilon {Rat (Rattus | 99.78 | |
| d1wfja_ | 136 | C2 domain protein At1g63220 {Thale cress (Arabidop | 99.77 | |
| d1rlwa_ | 126 | Domain from cytosolic phospholipase A2 {Human (Hom | 99.77 | |
| d2ep6a1 | 126 | Multiple C2 and transmembrane domain-containing pr | 99.76 | |
| d1v0wa1 | 258 | Phospholipase D {Streptomyces sp. [TaxId: 1931]} | 99.75 | |
| d1qasa2 | 131 | PI-specific phospholipase C isozyme D1 (PLC-D1), C | 99.75 | |
| d2cjta1 | 128 | Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: | 99.73 | |
| d2nq3a1 | 133 | E3 ubiquitin-protein ligase Itchy {Human (Homo sap | 99.71 | |
| d1bdya_ | 123 | Domain from protein kinase C delta {Rat (Rattus no | 99.7 | |
| d1byra_ | 152 | Nuclease Nuc {Salmonella typhimurium [TaxId: 90371 | 99.69 | |
| d1byra_ | 152 | Nuclease Nuc {Salmonella typhimurium [TaxId: 90371 | 99.67 | |
| d1v0wa2 | 246 | Phospholipase D {Streptomyces sp. [TaxId: 1931]} | 99.67 | |
| d1a25a_ | 132 | C2 domain from protein kinase c (beta) {Rat (Rattu | 99.63 | |
| d1rsya_ | 143 | Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10 | 99.6 | |
| d2zkmx2 | 122 | Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI | 99.56 | |
| d1wfma_ | 138 | Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9 | 99.55 | |
| d1dqva1 | 130 | Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: | 99.54 | |
| d1rh8a_ | 142 | Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.54 | |
| d1uowa_ | 157 | Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10 | 99.46 | |
| d1w15a_ | 138 | Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: | 99.45 | |
| d2bwqa1 | 125 | Regulating synaptic membrane exocytosis protein, r | 99.42 | |
| d1ugka_ | 138 | Synaptotagmin IV {Human (Homo sapiens) [TaxId: 960 | 99.41 | |
| d2cm5a1 | 137 | C2b-domain of rabphilin {Rat (Rattus norvegicus) [ | 99.39 | |
| d1dqva2 | 145 | Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: | 99.22 | |
| d2o8ra3 | 188 | Polyphosphate kinase, PPK {Porphyromonas gingivali | 97.01 | |
| d1xdpa3 | 187 | Polyphosphate kinase, PPK {Escherichia coli [TaxId | 96.07 | |
| d1xdpa3 | 187 | Polyphosphate kinase, PPK {Escherichia coli [TaxId | 96.06 | |
| d1xdpa4 | 187 | Polyphosphate kinase, PPK {Escherichia coli [TaxId | 95.54 | |
| d2o8ra3 | 188 | Polyphosphate kinase, PPK {Porphyromonas gingivali | 95.46 | |
| d2o8ra4 | 186 | Polyphosphate kinase, PPK {Porphyromonas gingivali | 93.15 | |
| d1e7ua2 | 174 | Phoshoinositide 3-kinase (PI3K) {Pig (Sus scrofa) | 90.33 | |
| d1jy1a2 | 258 | Tyrosyl-DNA phosphodiesterase TDP1 {Human (Homo sa | 87.49 | |
| d1q32a2 | 237 | Tyrosyl-DNA phosphodiesterase TDP1 {Baker's yeast | 81.37 |
| >d1v0wa1 d.136.1.2 (A:6-263) Phospholipase D {Streptomyces sp. [TaxId: 1931]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Phospholipase D/nuclease superfamily: Phospholipase D/nuclease family: Phospholipase D domain: Phospholipase D species: Streptomyces sp. [TaxId: 1931]
Probab=99.97 E-value=4.6e-31 Score=196.03 Aligned_cols=157 Identities=19% Similarity=0.236 Sum_probs=117.1
Q ss_pred CHHHHHHHHHHHHCCCCEEEEEEEECCCCEEEEECCCHHHCCCHHHHHHHHHHHHHHCC--CEEEEEEECCCCCCCCCCC
Q ss_conf 12489999999970254899999413883479618812210001999999999998829--9499988079887100014
Q 004680 160 PGKLWEDVYKAIEGAKHLIYIAGWSLNPKMVLVRDSQTEIAHARGVQLGELLKHKAEEG--VAVRIMLWDDETSLPIIKN 237 (737)
Q Consensus 160 ~~~~~~~i~~aI~~Ak~~I~I~~w~~~~~i~L~r~~~~~~~~~~~~~l~~lL~~kA~~G--V~VriLvwD~~~s~~~~~~ 237 (737)
++++|++|.++|.+||++|+|+.|++.| ++. .+..|.++|+++|+|| |+||||+ |..++.....
T Consensus 62 ~~~~~~~~~~~I~~A~~~I~i~~~~~~p------d~~------~~~~i~~aL~~aA~rG~~V~VriL~-d~~gs~~~~~- 127 (258)
T d1v0wa1 62 TKRLLAKMTENIGNATRTVDISTLAPFP------NGA------FQDAIVAGLKESAAKGNKLKVRILV-GAAPVYHMNV- 127 (258)
T ss_dssp HHHHHHHHHHHHHTCSSEEEEEEESSCC------CHH------HHHHHHHHHHHHHHTTCCEEEEEEE-ECCC--CCCC-
T ss_pred HHHHHHHHHHHHHHHCCEEEEEEEEECC------CCH------HHHHHHHHHHHHHHCCCCEEEEEEE-CCCCCCCCCC-
T ss_conf 6999999999999750399999989758------966------9999999999998689976999984-7866544320-
Q ss_pred CCCCCCCCHHHHHHHH----CCCCEEEE--CCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCC
Q ss_conf 4554566188899872----29939998--58898888864457310699628876854664248997563378977679
Q 004680 238 KGVMRTHDEDAFAYFK----HTKVICKL--CPRLHHKFPTLFAHHQKTITVDARAQDSIFDREIMSFVGGLDLCDGRYDT 311 (737)
Q Consensus 238 ~g~~~~~~~~~~~~l~----~~~v~v~~--~~r~~~~~~~~~~hHqK~vVVD~~~~~~~~~~~~vAfvGGidL~~~R~Dt 311 (737)
......+.+. ...+.+.+ ..... ....+.+||+|++|||++ +|||||+||+++||+.
T Consensus 128 ------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~rnH~Ki~VVDg~----------~a~vGG~Ni~~~~~~~ 190 (258)
T d1v0wa1 128 ------IPSKYRDELTAKLGKAAENITLNVASMTT-SKTAFSWNHSKILVVDGQ----------SALTGGINSWKDDYLD 190 (258)
T ss_dssp ------HHHHHHHHHHHHHGGGGGGEEEEEEEECS-BTTTTBCBCCCEEEETTT----------EEEEESCCCCHHHHTS
T ss_pred ------CHHHHHHHHHHHCCCEEECCCCCCCCCCC-CCCCCCCCCCEEEEECCC----------EEEECCCCCCCCCCCC
T ss_conf ------16999999997305203324311234445-566543466469998698----------8997785167421358
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCEEECHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 99754445788755576543334676568999999711011105087899999999999622069998
Q 004680 312 EKHSLFQTLNSESHCFDFYQINIAGASLHKGGPREPWHDVHACITGEAAWDVLTNFEQRWTKQCDPSL 379 (737)
Q Consensus 312 ~~H~l~~~l~~~~~~~d~~~~~~~g~~~~~~~~~~pWhDv~~~i~Gpaa~dl~~~F~~rW~~~~~~~~ 379 (737)
. ..||||++++|+||+|.++...|.++|+.++++..
T Consensus 191 ~--------------------------------~~~w~D~~~~v~Gp~v~~~~~~F~~~W~~~~~e~~ 226 (258)
T d1v0wa1 191 T--------------------------------THPVSDVDLALTGPAAGSAGRYLDTLWTWTCQNKS 226 (258)
T ss_dssp S--------------------------------SSCCBEEEEEEESHHHHHHHHHHHHHHHHHHHTTT
T ss_pred C--------------------------------CCCEEEEEEEEECHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 8--------------------------------99766657999888999999999999999858878
|
| >d1v0wa2 d.136.1.2 (A:264-514) Phospholipase D {Streptomyces sp. [TaxId: 1931]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Phospholipase D/nuclease superfamily: Phospholipase D/nuclease family: Phospholipase D domain: Phospholipase D species: Streptomyces sp. [TaxId: 1931]
Probab=99.85 E-value=2.8e-21 Score=139.13 Aligned_cols=173 Identities=13% Similarity=0.078 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCC---
Q ss_conf 33899999999995213699951223578533233445787775279999999999981898189999159999999---
Q 004680 430 ERSIHEAYVEAIRKAERFIYIENQYFIGGCQLWEKDKHCGCRNLIPIEIALKVVSKIKAKERFAVYILIPMWPEGVP--- 506 (737)
Q Consensus 430 ~~sI~~ayl~aI~~Ak~~IyIEnqYFi~~~~~w~~~~~~~~~n~i~~~la~~ia~a~~~g~~~~V~IvlP~~p~g~~--- 506 (737)
.+....+++.+|++|+++|||++|||...+.. .+.....++.+|+++.+|| ++|+||++.......
T Consensus 52 ~~~~e~a~~~lI~~A~~~I~I~~q~~~~~~~p---------~~~~~~~l~~AL~~aa~RG--V~Vrvll~~~~~~~~~~~ 120 (246)
T d1v0wa2 52 VNPEESALRALVASAKGHIEISQQDLNATCPP---------LPRYDIRLYDALAAKMAAG--VKVRIVVSDPANRGAVGS 120 (246)
T ss_dssp HCHHHHHHHHHHHTCSSEEEEEESCSSCCTTT---------SCSCCHHHHHHHHHHHHTT--CEEEEEECCGGGCC----
T ss_pred CCHHHHHHHHHHHHCCCEEEEEEEEECCCCCC---------CCCCCHHHHHHHHHHHHCC--CCEEEEEECCCCCCCCCC
T ss_conf 27689999999972372899998752466776---------5665379999999999759--937999836775420112
Q ss_pred -CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC-----CCCCCCEEEEECCCHHHHCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf -999501255667886998999999999965998-----89767258730420343205996359999999825677642
Q 004680 507 -TSDPVQDILHWTRETMAMMYKLIGEAIQESGQV-----GHPRDFLNFFCLATREEKKSNGEFVPPYSPHPMTQYWNAQM 580 (737)
Q Consensus 507 -~~~~~~~i~~~~~~t~~~~~~~~~~~L~~~gv~-----~~p~~yl~~~~l~~r~~~~~~~~~~p~~~p~~~~~~~~~~~ 580 (737)
.......++... ..++..+....-. ....+.+.++.+... . .+. .
T Consensus 121 ~~~~~~~~L~~~g--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~--~~~---------~ 171 (246)
T d1v0wa2 121 GGYSQIKSLSEIS--------DTLRNRLANITGGQQAAKTAMCSNLQLATFRSS----------P--NGK---------W 171 (246)
T ss_dssp --CCCCSCTHHHH--------HHHHHHHHHHHTSHHHHHHHHHHHEEEEECCSS----------S--SSS---------C
T ss_pred CHHHHHHHHHHHC--------CHHHHCCCCCCCHHHHHCCCCCCCCCEEEEECC----------C--CCC---------C
T ss_conf 3088999999816--------326420323444033320232345430243215----------6--765---------5
Q ss_pred CCCCCEEEEEEEEEEECEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCC
Q ss_conf 03420466656999924299970558773655899973027997239987861235899999999999629
Q 004680 581 HRRFMVYVHSKLMIVDDVYLLIGSANINQRSMDGQRDTEIAIGCYQLPKNDDQNSEDISAYRLSLWYEHTG 651 (737)
Q Consensus 581 ~~~~~iyvHSK~mIVDD~~~iIGSANiN~RSm~g~~DsEi~v~i~~~~~~~~~~~~~~~~lR~~Lw~ehlG 651 (737)
..+..+++|+|+|||||++++|||+||+.||+ +|+++++++|..+ ......+....|...-.
T Consensus 172 ~~~~~~~lH~K~~VVD~~~~~VGS~Nl~p~~~-----~E~g~vi~~p~~a----~~l~~~~~~~~W~~s~~ 233 (246)
T d1v0wa2 172 ADGHPYAQHHKLVSVDSSTFYIGSKNLYPSWL-----QDFGYIVESPEAA----KQLDAKLLDPQWKYSQE 233 (246)
T ss_dssp TTSCCCCBCCEEEEETTTEEEEESCCSSCCCS-----BCEEEEEECHHHH----HHHHHHTHHHHHHHHGG
T ss_pred CCCCCCCCCEEEEEECCCEEEECCCCCCCCHH-----CCCCEEEECHHHH----HHHHHHHHHHHHHHCCC
T ss_conf 67765444104999859899971885896022-----0175899489999----99999999999876330
|
| >d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C epsilon species: Rat (Rattus rattus) [TaxId: 10117]
Probab=99.78 E-value=7.3e-19 Score=125.09 Aligned_cols=95 Identities=11% Similarity=0.248 Sum_probs=80.8
Q ss_pred CCCCCCCEEEEEECCEEEEECC---CCCCCEEEEEEEEECCCCCEEEEEEEECCC---CCCCEEEEEEHHHHHCC-CCCC
Q ss_conf 0688994799998997876426---999980767999993799617999983588---84317799602545101-3422
Q 004680 7 FVNGKPTYVTIKIDNKKVAKTS---HEHDRVWNQTFQILCAHPADATITITLKTK---CSVLGKIHIQALQILNE-ASLI 79 (737)
Q Consensus 7 ~~~~~DPYv~i~l~~~~v~rTk---~t~nP~WnE~F~i~~~~~~~l~~~V~D~d~---d~~iG~~~ipl~~l~~~-g~~~ 79 (737)
..+++||||+|.++++++.||+ ++.||+|||+|.|++.+...|.|+|+|++. |++||.+.|+|+++... +...
T Consensus 34 ~~~~~DPYv~v~l~~~~~~~T~~~~~t~~P~Wne~f~f~v~~~~~l~i~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~ 113 (136)
T d1gmia_ 34 QTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCNGRKIELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHF 113 (136)
T ss_dssp CCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEEECEEEEEEEECCSSSSCEEEEEEEEEHHHHTSTTCSEE
T ss_pred CCCCCCCEEEEEECCCCCCEEEEECCCCCCCCCCEEEEEEECCCCEEEEEEEECCCCCCEEEEEEEEEHHHHHHCCCCCE
T ss_conf 88875837999918986767058849889539637999993278459999996689874057899999799531689622
Q ss_pred CCEEECCCCCCCCCCCCCEEEEEECCCCC
Q ss_conf 41695525899889996079998314787
Q 004680 80 SGFFPLEMENGKPNPDLRLRFMLWFKPAA 108 (737)
Q Consensus 80 d~w~~L~~~~~k~~~~~~l~l~l~f~p~~ 108 (737)
+.|++|. + .|+|++.+++.+..
T Consensus 114 ~~w~~L~-p------~G~v~l~v~~~~~~ 135 (136)
T d1gmia_ 114 EDWIDLE-P------EGKVYVIIDLSGSS 135 (136)
T ss_dssp EEEEECB-S------SCEEEEEEEEEEEE
T ss_pred EEEEECC-C------CCEEEEEEEEEECC
T ss_conf 4899677-8------82999999999079
|
| >d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain protein At1g63220 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.77 E-value=4.7e-19 Score=126.20 Aligned_cols=101 Identities=19% Similarity=0.261 Sum_probs=84.0
Q ss_pred CCCCCCCCCEEEEEECCEEEEECC----CCCCCEEEEEEEEECCCCC-EEEEEEEECCC---CCCCEEEEEEHHHHHCCC
Q ss_conf 300688994799998997876426----9999807679999937996-17999983588---843177996025451013
Q 004680 5 CVFVNGKPTYVTIKIDNKKVAKTS----HEHDRVWNQTFQILCAHPA-DATITITLKTK---CSVLGKIHIQALQILNEA 76 (737)
Q Consensus 5 ~~~~~~~DPYv~i~l~~~~v~rTk----~t~nP~WnE~F~i~~~~~~-~l~~~V~D~d~---d~~iG~~~ipl~~l~~~g 76 (737)
+-..|++||||++.+++.+. +|+ ++.||+|||+|.|.+.... .|.|+|+|+|. |++||++.|||.++...+
T Consensus 25 ~d~~g~~Dpyv~v~~~~~~~-~t~~~~~~~~nP~Wne~f~f~v~~~~~~L~v~V~d~d~~~~d~~iG~~~i~L~~l~~~~ 103 (136)
T d1wfja_ 25 ADFLNNMDPYVQLTCRTQDQ-KSNVAEGMGTTPEWNETFIFTVSEGTTELKAKIFDKDVGTEDDAVGEATIPLEPVFVEG 103 (136)
T ss_dssp CCSSCSSCCCEEEESSSCEE-ECCCCTTCCSSCEEEEEEEEEEESSCCEEEEEECCSSSCTTTCCSEEEEEESHHHHHHS
T ss_pred CCCCCCCCCCEEEEEEEEEE-EEEEEECCCCCEEEEEEEEEEECCCCCEEEEEEEEECCCCCCCEEEEEEEEHHHHCCCC
T ss_conf 88899979328999945537-88899668872887069999973831157999999569999988999999938711269
Q ss_pred CCCCCEEECCCCCCCCCCCCCEEEEEECCCCCC
Q ss_conf 422416955258998899960799983147876
Q 004680 77 SLISGFFPLEMENGKPNPDLRLRFMLWFKPAAY 109 (737)
Q Consensus 77 ~~~d~w~~L~~~~~k~~~~~~l~l~l~f~p~~~ 109 (737)
.....|++|.. ++++ .|+|++.++|.|...
T Consensus 104 ~~~~~~~~l~~-~~~~--~G~i~l~l~~~p~~p 133 (136)
T d1wfja_ 104 SIPPTAYNVVK-DEEY--KGEIWVALSFKPSGP 133 (136)
T ss_dssp EEEEEEEEEEE-TTEE--EEEEEEEEEEEECCS
T ss_pred CCCCEEEEECC-CCCC--CEEEEEEEEEEECCC
T ss_conf 86737878647-9945--789999999984898
|
| >d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from cytosolic phospholipase A2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.77 E-value=1.1e-18 Score=124.07 Aligned_cols=94 Identities=17% Similarity=0.226 Sum_probs=80.6
Q ss_pred CCCCCCEEEEEECC--EEEEECC---CCCCCEEEEEEEEECCCCC--EEEEEEEECCC--CCCCEEEEEEHHHHHCCCCC
Q ss_conf 68899479999899--7876426---9999807679999937996--17999983588--84317799602545101342
Q 004680 8 VNGKPTYVTIKIDN--KKVAKTS---HEHDRVWNQTFQILCAHPA--DATITITLKTK--CSVLGKIHIQALQILNEASL 78 (737)
Q Consensus 8 ~~~~DPYv~i~l~~--~~v~rTk---~t~nP~WnE~F~i~~~~~~--~l~~~V~D~d~--d~~iG~~~ipl~~l~~~g~~ 78 (737)
.|++||||++.+++ ....||+ ++.||+|||+|.|.+.... .|.|+|+|+|. |++||++.|+|++|. .|+.
T Consensus 24 ~~~~Dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~f~i~~~~~~~L~v~V~d~d~~~d~~lG~~~i~L~~l~-~~~~ 102 (126)
T d1rlwa_ 24 LDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANYVMDETLGTATFTVSSMK-VGEK 102 (126)
T ss_dssp HCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEECCSSCCEEEEEEEEEGGGSC-TTCE
T ss_pred CCCCCCEEEEEECCCCCCEEEEEECCCCCCCEECEEEEECCCCCCCCCEEEEEEECCCCCCCEEEEEEEEHHHCC-CCCE
T ss_conf 889781899999773461167640478865010114501045841271799999879978974899999988865-9983
Q ss_pred CCCEEECCCCCCCCCCCCCEEEEEECCCC
Q ss_conf 24169552589988999607999831478
Q 004680 79 ISGFFPLEMENGKPNPDLRLRFMLWFKPA 107 (737)
Q Consensus 79 ~d~w~~L~~~~~k~~~~~~l~l~l~f~p~ 107 (737)
.+.||+|.. . +.|+|++++++.|.
T Consensus 103 ~~~~~~L~~-~----~~g~i~~~l~~~~s 126 (126)
T d1rlwa_ 103 KEVPFIFNQ-V----TEMVLEMSLEVASS 126 (126)
T ss_dssp EEEEEEETT-T----EEEEEEEEEECCCC
T ss_pred EEEEEECCC-C----CEEEEEEEEEEEEC
T ss_conf 889998348-9----80899999999739
|
| >d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.76 E-value=1.6e-18 Score=123.07 Aligned_cols=95 Identities=15% Similarity=0.235 Sum_probs=80.1
Q ss_pred CCCCCCCEEEEEECCEEEEECC---CCCCCEEEEEEEEECCCCC-EEEEEEEECCC---CCCCEEEEEEHHHHHCCCCCC
Q ss_conf 0688994799998997876426---9999807679999937996-17999983588---843177996025451013422
Q 004680 7 FVNGKPTYVTIKIDNKKVAKTS---HEHDRVWNQTFQILCAHPA-DATITITLKTK---CSVLGKIHIQALQILNEASLI 79 (737)
Q Consensus 7 ~~~~~DPYv~i~l~~~~v~rTk---~t~nP~WnE~F~i~~~~~~-~l~~~V~D~d~---d~~iG~~~ipl~~l~~~g~~~ 79 (737)
..|++||||++.+++.+. ||+ +|.||+|||+|.|.+.++. .|.|+|+|+|. |++||++.|+|+++. .+.
T Consensus 23 ~~g~~Dpyv~v~~~~~~~-~T~~~~~t~nP~wne~f~f~v~~~~~~L~i~V~d~~~~~~d~~lG~~~i~l~~l~-~~~-- 98 (126)
T d2ep6a1 23 FSGKSDPFCLLELGNDRL-QTHTVYKNLNPEWNKVFTFPIKDIHDVLEVTVFDEDGDKPPDFLGKVAIPLLSIR-DGQ-- 98 (126)
T ss_dssp SSSCCCEEEEEEETTEEE-ECCCCSSCSSCCCCEEEEEEESCTTCEEEEEEEEEETTEEEEECCBCEEEGGGCC-SSC--
T ss_pred CCCCCCEEEEEECCCEEE-EEEEECCCEEEEEEEEEEEEEECCCCEEEEEEEECCCCCCCCEEEEEEEEHHHCC-CCC--
T ss_conf 899969599997698588-7774077405789899999984367500899999369847625899999989988-999--
Q ss_pred CCEEECCCCCCCCCCCCCEEEEEECC
Q ss_conf 41695525899889996079998314
Q 004680 80 SGFFPLEMENGKPNPDLRLRFMLWFK 105 (737)
Q Consensus 80 d~w~~L~~~~~k~~~~~~l~l~l~f~ 105 (737)
..|+.|.....+....|+|+++++|.
T Consensus 99 ~~~~~l~~~~~~~~~~G~i~l~~~~i 124 (126)
T d2ep6a1 99 PNCYVLKNKDLEQAFKGVIYLEMDLI 124 (126)
T ss_dssp CEECCCBCSCTTSCCSSEEEEEEEEE
T ss_pred CEEEECCCCCCCCCEEEEEEEEEEEE
T ss_conf 64998415489975429999999999
|
| >d1v0wa1 d.136.1.2 (A:6-263) Phospholipase D {Streptomyces sp. [TaxId: 1931]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Phospholipase D/nuclease superfamily: Phospholipase D/nuclease family: Phospholipase D domain: Phospholipase D species: Streptomyces sp. [TaxId: 1931]
Probab=99.75 E-value=6.1e-18 Score=119.75 Aligned_cols=161 Identities=15% Similarity=0.119 Sum_probs=104.2
Q ss_pred CCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCC
Q ss_conf 52133899999999995213699951223578533233445787775279999999999981898189999159999999
Q 004680 427 LTVERSIHEAYVEAIRKAERFIYIENQYFIGGCQLWEKDKHCGCRNLIPIEIALKVVSKIKAKERFAVYILIPMWPEGVP 506 (737)
Q Consensus 427 ~~~~~sI~~ayl~aI~~Ak~~IyIEnqYFi~~~~~w~~~~~~~~~n~i~~~la~~ia~a~~~g~~~~V~IvlP~~p~g~~ 506 (737)
....+.+..+++++|++||++||||++||.++.. +..+++.+|.+++++|++|+|+|++...+.- .
T Consensus 59 ~~~~~~~~~~~~~~I~~A~~~I~i~~~~~~pd~~-------------~~~~i~~aL~~aA~rG~~V~VriL~d~~gs~-~ 124 (258)
T d1v0wa1 59 RVGTKRLLAKMTENIGNATRTVDISTLAPFPNGA-------------FQDAIVAGLKESAAKGNKLKVRILVGAAPVY-H 124 (258)
T ss_dssp CHHHHHHHHHHHHHHHTCSSEEEEEEESSCCCHH-------------HHHHHHHHHHHHHHTTCCEEEEEEEECCC---C
T ss_pred CCCHHHHHHHHHHHHHHHCCEEEEEEEEECCCCH-------------HHHHHHHHHHHHHHCCCCEEEEEEECCCCCC-C
T ss_conf 8776999999999999750399999989758966-------------9999999999998689976999984786654-4
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCE
Q ss_conf 99950125566788699899999999996599889767258730420343205996359999999825677642034204
Q 004680 507 TSDPVQDILHWTRETMAMMYKLIGEAIQESGQVGHPRDFLNFFCLATREEKKSNGEFVPPYSPHPMTQYWNAQMHRRFMV 586 (737)
Q Consensus 507 ~~~~~~~i~~~~~~t~~~~~~~~~~~L~~~gv~~~p~~yl~~~~l~~r~~~~~~~~~~p~~~p~~~~~~~~~~~~~~~~i 586 (737)
.. . . ...+.+.|.+.+++.....+++.+.+.. .++...
T Consensus 125 ~~----~-------~----~~~~~~~l~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~ 162 (258)
T d1v0wa1 125 MN----V-------I----PSKYRDELTAKLGKAAENITLNVASMTT---------------------------SKTAFS 162 (258)
T ss_dssp CC----C-------H----HHHHHHHHHHHHGGGGGGEEEEEEEECS---------------------------BTTTTB
T ss_pred CC----C-------C----HHHHHHHHHHHCCCEEECCCCCCCCCCC---------------------------CCCCCC
T ss_conf 32----0-------1----6999999997305203324311234445---------------------------566543
Q ss_pred EEEEEEEEEECEEEEEECCCCCCCCCCCCCC---CCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC
Q ss_conf 6665699992429997055877365589997---302799723998786123589999999999962
Q 004680 587 YVHSKLMIVDDVYLLIGSANINQRSMDGQRD---TEIAIGCYQLPKNDDQNSEDISAYRLSLWYEHT 650 (737)
Q Consensus 587 yvHSK~mIVDD~~~iIGSANiN~RSm~g~~D---sEi~v~i~~~~~~~~~~~~~~~~lR~~Lw~ehl 650 (737)
+.|+|+||||+++++|||.||.+..+... . .++.+.+..|. ...+.....+.|.--.
T Consensus 163 rnH~Ki~VVDg~~a~vGG~Ni~~~~~~~~-~~~w~D~~~~v~Gp~------v~~~~~~F~~~W~~~~ 222 (258)
T d1v0wa1 163 WNHSKILVVDGQSALTGGINSWKDDYLDT-THPVSDVDLALTGPA------AGSAGRYLDTLWTWTC 222 (258)
T ss_dssp CBCCCEEEETTTEEEEESCCCCHHHHTSS-SSCCBEEEEEEESHH------HHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCEEEECCCCCCCCCCCCC-CCCEEEEEEEEECHH------HHHHHHHHHHHHHHHH
T ss_conf 46646999869889977851674213588-997666579998889------9999999999999985
|
| >d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.75 E-value=3.9e-18 Score=120.90 Aligned_cols=95 Identities=14% Similarity=0.173 Sum_probs=78.6
Q ss_pred CCCCCCCEEEEEEC----CEEEEECC----CCCCCEEEEEEEEECCCCC--EEEEEEEECCC---CCCCEEEEEEHHHHH
Q ss_conf 06889947999989----97876426----9999807679999937996--17999983588---843177996025451
Q 004680 7 FVNGKPTYVTIKID----NKKVAKTS----HEHDRVWNQTFQILCAHPA--DATITITLKTK---CSVLGKIHIQALQIL 73 (737)
Q Consensus 7 ~~~~~DPYv~i~l~----~~~v~rTk----~t~nP~WnE~F~i~~~~~~--~l~~~V~D~d~---d~~iG~~~ipl~~l~ 73 (737)
..+++||||+|.+. +....||+ +++||+|||+|.|.+.... .|.|+|+|+|. |++||++.|||+.+.
T Consensus 23 ~~~~~DPyV~v~l~g~~~~~~~~~T~~v~~~~~nP~wne~f~f~~~~~~~~~L~~~V~D~d~~~~d~~iG~~~i~l~~l~ 102 (131)
T d1qasa2 23 KNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVEDYDSSSKNDFIGQSTIPWNSLK 102 (131)
T ss_dssp ---CCCEEEEEEEESSTTTCEEEECCCCSSCSSSCEEEEEEEEEESCGGGCEEEEEEEECCTTTCCEEEEEEEEEGGGBC
T ss_pred CCCCCCEEEEEEECCCCCCCEEEEEEEEECCCCCCEEEEEEEEEEECCHHCEEEEEEEEECCCCCCCEEEEEEEEEECCC
T ss_conf 89981869999996678885787888896665796597799999776323258999998068889868899999976267
Q ss_pred CCCCCCCCEEECCCCCCCCCCCCCEEEEEECC
Q ss_conf 01342241695525899889996079998314
Q 004680 74 NEASLISGFFPLEMENGKPNPDLRLRFMLWFK 105 (737)
Q Consensus 74 ~~g~~~d~w~~L~~~~~k~~~~~~l~l~l~f~ 105 (737)
.|. .|++|.+..|+++..++|.+.+.+.
T Consensus 103 -~g~---~~~~L~~~~g~~~~~~~L~v~i~~~ 130 (131)
T d1qasa2 103 -QGY---RHVHLLSKNGDQHPSATLFVKISIQ 130 (131)
T ss_dssp -CEE---EEEEEECTTSCEEEEEEEEEEEEEE
T ss_pred -CCC---EEEECCCCCCCCCCCCEEEEEEEEE
T ss_conf -877---8998989995998877899999998
|
| >d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Unc-13 homolog A species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.73 E-value=2.4e-17 Score=116.26 Aligned_cols=96 Identities=20% Similarity=0.248 Sum_probs=75.8
Q ss_pred CCCCCCEEEEEECCEEEEECC--CCCCCEEEEEEEEECCCCC-EEEEEEEECCC--CCCCEEEEEEHHHHHCC-CCCCCC
Q ss_conf 688994799998997876426--9999807679999937996-17999983588--84317799602545101-342241
Q 004680 8 VNGKPTYVTIKIDNKKVAKTS--HEHDRVWNQTFQILCAHPA-DATITITLKTK--CSVLGKIHIQALQILNE-ASLISG 81 (737)
Q Consensus 8 ~~~~DPYv~i~l~~~~v~rTk--~t~nP~WnE~F~i~~~~~~-~l~~~V~D~d~--d~~iG~~~ipl~~l~~~-g~~~d~ 81 (737)
.+++||||++.+++.+ .+|+ ++.||+|||+|.|++.++. .|.|+|+|+|. |++||++.|||+++... ....+.
T Consensus 17 ~~~~dpYv~l~~~~~k-~~T~~~k~~nP~Wne~f~f~v~~~~~~L~v~V~d~~~~~d~~lG~~~I~L~~l~~~~~~~~~~ 95 (128)
T d2cjta1 17 QEKFNTYVTLKVQNVK-STTIAVRGSQPSWEQDFMFEINRLDLGLTVEVWNKGLIWDTMVGTVWIPLRTIRQSNEEGPGE 95 (128)
T ss_dssp GGGCEEEEEEEETTEE-EECCCEESSSCEEEEEEEEEECCCSSEEEEEEEECCSSCEEEEEEEEEEGGGSCBCSSCCCCE
T ss_pred CCCCCEEEEEEECCEE-EEEEEECCCCCEEEEEEEEEECCCCCEEEEEEEECCCCCCCCEEEEEEEEHHHCCCCCCCCCE
T ss_conf 8886809999959998-999874689983899998851466525999999678767861499999943301478878885
Q ss_pred EEECCCCC----CC----CC-CCCCEEEEEEC
Q ss_conf 69552589----98----89-99607999831
Q 004680 82 FFPLEMEN----GK----PN-PDLRLRFMLWF 104 (737)
Q Consensus 82 w~~L~~~~----~k----~~-~~~~l~l~l~f 104 (737)
|++|..+. |+ +. ...+|+++++|
T Consensus 96 W~~L~~~~~~~~gei~gt~~~~~~~~ll~~~~ 127 (128)
T d2cjta1 96 WLTLDSQAIMADSEICGTKDPTFHRILLDAHF 127 (128)
T ss_dssp EEECBC----------CCSCCCCCEEEEEEEE
T ss_pred EEECCCCCCCCCCEEEEEECCCCCEEEEEEEC
T ss_conf 07888634578987971436987689999983
|
| >d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: E3 ubiquitin-protein ligase Itchy species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.71 E-value=6e-17 Score=113.98 Aligned_cols=101 Identities=15% Similarity=0.176 Sum_probs=77.7
Q ss_pred CCCCCCCCEEEEEECCEEEEECC---CCCCCEEEEEEEEECCCCCEEEEEEEECCC---CCCCEEEEEEHHHHHC--CCC
Q ss_conf 00688994799998997876426---999980767999993799617999983588---8431779960254510--134
Q 004680 6 VFVNGKPTYVTIKIDNKKVAKTS---HEHDRVWNQTFQILCAHPADATITITLKTK---CSVLGKIHIQALQILN--EAS 77 (737)
Q Consensus 6 ~~~~~~DPYv~i~l~~~~v~rTk---~t~nP~WnE~F~i~~~~~~~l~~~V~D~d~---d~~iG~~~ipl~~l~~--~g~ 77 (737)
...+++||||+|.++++. .||+ ++.||+|||+|.|++.....|.|+|+|+|. |++||++.|+|.+++. .+.
T Consensus 22 ~~~~~~dpyv~v~~~~~~-~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~V~d~d~~~~d~~iG~~~i~L~~l~~~~~~~ 100 (133)
T d2nq3a1 22 KNWFGPSPYVEVTVDGQS-KKTEKCNNTNSPKWKQPLTVIVTPVSKLHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMK 100 (133)
T ss_dssp --CCCCCEEEEEEETTEE-EECCCCSSCSSCEEEEEEEEEECTTCEEEEEEEECCSSSCCEEEEEEEEEHHHHHHHTTTE
T ss_pred CCCCCCCEEEEEEECCEE-EEEEEEEECCCEEECCEEEEEEEECCEEEEEEEECCCCCCCCEEEEEEEEHHHHHHHCCCC
T ss_conf 788996959999999847-8437997036278765679999802206999998268889946899999979934135995
Q ss_pred CCCCE--EECCCCCCCCCCCCCEEEEEECCCC
Q ss_conf 22416--9552589988999607999831478
Q 004680 78 LISGF--FPLEMENGKPNPDLRLRFMLWFKPA 107 (737)
Q Consensus 78 ~~d~w--~~L~~~~~k~~~~~~l~l~l~f~p~ 107 (737)
..+.| +.|....+.....|+|.+.|.+...
T Consensus 101 ~~~~~~~l~l~~~~~~~~~~G~L~v~l~~~~~ 132 (133)
T d2nq3a1 101 LEEVVVTLQLGGDKEPTETIGDLSICLDGLQL 132 (133)
T ss_dssp ESSEEEEEEEEESSCTTSEEEEEEEEEESEEC
T ss_pred EEEEEEEEECCCCCCCCEEEEEEEEEEEEEEC
T ss_conf 21599998657888983278999999943886
|
| >d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C delta species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.70 E-value=1.7e-17 Score=117.13 Aligned_cols=92 Identities=7% Similarity=0.082 Sum_probs=74.6
Q ss_pred CCCCCCCEEEEEECCEE----EEECC---CCCCCEEEEEEEEECCCCCEEEEEEEECCCCCCCEEEEEEHHHHHC----C
Q ss_conf 06889947999989978----76426---9999807679999937996179999835888431779960254510----1
Q 004680 7 FVNGKPTYVTIKIDNKK----VAKTS---HEHDRVWNQTFQILCAHPADATITITLKTKCSVLGKIHIQALQILN----E 75 (737)
Q Consensus 7 ~~~~~DPYv~i~l~~~~----v~rTk---~t~nP~WnE~F~i~~~~~~~l~~~V~D~d~d~~iG~~~ipl~~l~~----~ 75 (737)
.+|++||||+|.+++.. ..+|+ +|+||+|||+|.|.+.....|.|.|+|.| ++++|.+.|+++.|.. .
T Consensus 20 ~~~~~dPY~~v~l~~~~~~~~~~~t~~~kkT~nP~WnE~F~~~v~~~~~l~i~V~d~d-d~~~g~~~i~l~~l~~~~~~~ 98 (123)
T d1bdya_ 20 EDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIYEGRVIQIVLMRAA-EDPMSEVTVGVSVLAERCKKN 98 (123)
T ss_dssp CCCSCCCEEEEEEEEECCGGGTTBEEECSCCBCCCTTCEEEEECCTTCEEEEEEEEET-TEEEEEEEEEHHHHHHHHHTT
T ss_pred CCCCCCCEEEEEECCCCCCCCCEEEEEECCCCCCCCCEEEEEEECCCCEEEEEEEECC-CCCCCCCEEEHHHEEECCCCC
T ss_conf 9988897799997686653344389986797886346699999744667999999864-353675177566624011368
Q ss_pred CCCCCCEEECCCCCCCCCCCCCEEEEEECCC
Q ss_conf 3422416955258998899960799983147
Q 004680 76 ASLISGFFPLEMENGKPNPDLRLRFMLWFKP 106 (737)
Q Consensus 76 g~~~d~w~~L~~~~~k~~~~~~l~l~l~f~p 106 (737)
+...+.|++|. + .|+|++.++|++
T Consensus 99 ~~~~~~W~~L~-~------~Gkl~l~v~~f~ 122 (123)
T d1bdya_ 99 NGKAEFWLDLQ-P------QAKVLMCVQYFL 122 (123)
T ss_dssp TTEEEEEEECB-S------SCEEEEEEEEEE
T ss_pred CCCCCEEEECC-C------CEEEEEEEEEEC
T ss_conf 98633797088-8------889999999963
|
| >d1byra_ d.136.1.1 (A:) Nuclease Nuc {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Phospholipase D/nuclease superfamily: Phospholipase D/nuclease family: Nuclease domain: Nuclease Nuc species: Salmonella typhimurium [TaxId: 90371]
Probab=99.69 E-value=1.3e-16 Score=112.00 Aligned_cols=135 Identities=23% Similarity=0.195 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCC
Q ss_conf 33899999999995213699951223578533233445787775279999999999981898189999159999999999
Q 004680 430 ERSIHEAYVEAIRKAERFIYIENQYFIGGCQLWEKDKHCGCRNLIPIEIALKVVSKIKAKERFAVYILIPMWPEGVPTSD 509 (737)
Q Consensus 430 ~~sI~~ayl~aI~~Ak~~IyIEnqYFi~~~~~w~~~~~~~~~n~i~~~la~~ia~a~~~g~~~~V~IvlP~~p~g~~~~~ 509 (737)
+.++.++++++|++|+++|+|+.++|.+ .++..+|..+.++| ++|+|++.......
T Consensus 11 ~~~~~~~i~~~I~~A~~~I~I~~~~~~~------------------~~i~~aL~~a~~rG--V~Vril~~~~~~~~---- 66 (152)
T d1byra_ 11 EGSARVLVLSAIDSAKTSIRMMAYSFTA------------------PDIMKALVAAKKRG--VDVKIVIDERGNTG---- 66 (152)
T ss_dssp TTHHHHHHHHHHHHCSSEEEEEESSBCC------------------HHHHHHHHHHHHTT--CEEEEEEESTTCCS----
T ss_pred CCCHHHHHHHHHHHCCCEEEEEEEEECC------------------HHHHHHHHHHHHCC--CEEEEEEEEECCCC----
T ss_conf 8609999999998488699999975349------------------89999999998649--85999997302344----
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCEEEE
Q ss_conf 50125566788699899999999996599889767258730420343205996359999999825677642034204666
Q 004680 510 PVQDILHWTRETMAMMYKLIGEAIQESGQVGHPRDFLNFFCLATREEKKSNGEFVPPYSPHPMTQYWNAQMHRRFMVYVH 589 (737)
Q Consensus 510 ~~~~i~~~~~~t~~~~~~~~~~~L~~~gv~~~p~~yl~~~~l~~r~~~~~~~~~~p~~~p~~~~~~~~~~~~~~~~iyvH 589 (737)
+. + ......+...++... +.. ...+.|
T Consensus 67 -------~~--~-----~~~~~~~~~~~~~~~---------------------~~~------------------~~~~~H 93 (152)
T d1byra_ 67 -------RA--S-----IAAMNYIANSGIPLR---------------------TDS------------------NFPIQH 93 (152)
T ss_dssp -------HH--H-----HHHHHHHHHTTCCEE---------------------EEC------------------SSSCCC
T ss_pred -------HH--H-----HHHHHHHHHCCCCCC---------------------CCC------------------CCCCCC
T ss_conf -------00--3-----999987653235422---------------------345------------------433022
Q ss_pred EEEEEEECEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 5699992429997055877365589997302799723998786123589999999999
Q 004680 590 SKLMIVDDVYLLIGSANINQRSMDGQRDTEIAIGCYQLPKNDDQNSEDISAYRLSLWY 647 (737)
Q Consensus 590 SK~mIVDD~~~iIGSANiN~RSm~g~~DsEi~v~i~~~~~~~~~~~~~~~~lR~~Lw~ 647 (737)
+|+||||++++++||+||+.+|+..| .|..+.+.+... ..........++|.
T Consensus 94 ~K~~ivD~~~~~~GS~N~t~~~~~~n--~e~~~~i~~~~~----v~~~~~~~F~~~w~ 145 (152)
T d1byra_ 94 DKVIIVDNVTVETGSFNFTKAAETKN--SENAVVIWNMPK----LAESFLEHWQDRWN 145 (152)
T ss_dssp CCEEEETTTEEEEESCCBSHHHHHTS--CEEEEEEESCHH----HHHHHHHHHHHHHH
T ss_pred CCEEEECCCEEEECCCCCCHHHHHCC--CCCEEEEECCHH----HHHHHHHHHHHHHH
T ss_conf 42478647426742667886787348--752699972899----99999999999984
|
| >d1byra_ d.136.1.1 (A:) Nuclease Nuc {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Phospholipase D/nuclease superfamily: Phospholipase D/nuclease family: Nuclease domain: Nuclease Nuc species: Salmonella typhimurium [TaxId: 90371]
Probab=99.67 E-value=2.9e-16 Score=110.03 Aligned_cols=135 Identities=20% Similarity=0.274 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHHCCCCEEEEEEEECCCCEEEEECCCHHHCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCC
Q ss_conf 24899999999702548999994138834796188122100019999999999988299499988079887100014455
Q 004680 161 GKLWEDVYKAIEGAKHLIYIAGWSLNPKMVLVRDSQTEIAHARGVQLGELLKHKAEEGVAVRIMLWDDETSLPIIKNKGV 240 (737)
Q Consensus 161 ~~~~~~i~~aI~~Ak~~I~I~~w~~~~~i~L~r~~~~~~~~~~~~~l~~lL~~kA~~GV~VriLvwD~~~s~~~~~~~g~ 240 (737)
+...+.+.++|.+|+++|+|+.+.|+ ...+.++|+.+++|||+||||+ |..+......
T Consensus 12 ~~~~~~i~~~I~~A~~~I~I~~~~~~-----------------~~~i~~aL~~a~~rGV~Vril~-~~~~~~~~~~---- 69 (152)
T d1byra_ 12 GSARVLVLSAIDSAKTSIRMMAYSFT-----------------APDIMKALVAAKKRGVDVKIVI-DERGNTGRAS---- 69 (152)
T ss_dssp THHHHHHHHHHHHCSSEEEEEESSBC-----------------CHHHHHHHHHHHHTTCEEEEEE-ESTTCCSHHH----
T ss_pred CCHHHHHHHHHHHCCCEEEEEEEEEC-----------------CHHHHHHHHHHHHCCCEEEEEE-EEECCCCHHH----
T ss_conf 60999999999848869999997534-----------------9899999999986498599999-7302344003----
Q ss_pred CCCCCHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 45661888998722993999858898888864457310699628876854664248997563378977679997544457
Q 004680 241 MRTHDEDAFAYFKHTKVICKLCPRLHHKFPTLFAHHQKTITVDARAQDSIFDREIMSFVGGLDLCDGRYDTEKHSLFQTL 320 (737)
Q Consensus 241 ~~~~~~~~~~~l~~~~v~v~~~~r~~~~~~~~~~hHqK~vVVD~~~~~~~~~~~~vAfvGGidL~~~R~Dt~~H~l~~~l 320 (737)
......+...++.+.... ....+|.|++|||++ ++++|+.|++...+.
T Consensus 70 -----~~~~~~~~~~~~~~~~~~-------~~~~~H~K~~ivD~~----------~~~~GS~N~t~~~~~---------- 117 (152)
T d1byra_ 70 -----IAAMNYIANSGIPLRTDS-------NFPIQHDKVIIVDNV----------TVETGSFNFTKAAET---------- 117 (152)
T ss_dssp -----HHHHHHHHHTTCCEEEEC-------SSSCCCCCEEEETTT----------EEEEESCCBSHHHHH----------
T ss_pred -----HHHHHHHHHCCCCCCCCC-------CCCCCCCCEEEECCC----------EEEECCCCCCHHHHH----------
T ss_conf -----999987653235422345-------433022424786474----------267426678867873----------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCEEEC--HHHHHHHHHHHHHHHHCC
Q ss_conf 8875557654333467656899999971101110508--789999999999962206
Q 004680 321 NSESHCFDFYQINIAGASLHKGGPREPWHDVHACITG--EAAWDVLTNFEQRWTKQC 375 (737)
Q Consensus 321 ~~~~~~~d~~~~~~~g~~~~~~~~~~pWhDv~~~i~G--paa~dl~~~F~~rW~~~~ 375 (737)
-.++..+.+.+ +++..+...|.+.|+.+.
T Consensus 118 --------------------------~n~e~~~~i~~~~~v~~~~~~~F~~~w~~~~ 148 (152)
T d1byra_ 118 --------------------------KNSENAVVIWNMPKLAESFLEHWQDRWNQGR 148 (152)
T ss_dssp --------------------------TSCEEEEEEESCHHHHHHHHHHHHHHHHTCE
T ss_pred --------------------------CCCCCEEEEECCHHHHHHHHHHHHHHHHHCC
T ss_conf --------------------------4875269997289999999999999984087
|
| >d1v0wa2 d.136.1.2 (A:264-514) Phospholipase D {Streptomyces sp. [TaxId: 1931]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Phospholipase D/nuclease superfamily: Phospholipase D/nuclease family: Phospholipase D domain: Phospholipase D species: Streptomyces sp. [TaxId: 1931]
Probab=99.67 E-value=9e-16 Score=107.13 Aligned_cols=156 Identities=16% Similarity=0.201 Sum_probs=96.8
Q ss_pred HHHHHHHHHHCCCCEEEEEEEECCCCEEEEECCCHHHCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCC--CCC
Q ss_conf 899999999702548999994138834796188122100019999999999988299499988079887100014--455
Q 004680 163 LWEDVYKAIEGAKHLIYIAGWSLNPKMVLVRDSQTEIAHARGVQLGELLKHKAEEGVAVRIMLWDDETSLPIIKN--KGV 240 (737)
Q Consensus 163 ~~~~i~~aI~~Ak~~I~I~~w~~~~~i~L~r~~~~~~~~~~~~~l~~lL~~kA~~GV~VriLvwD~~~s~~~~~~--~g~ 240 (737)
....+..+|.+|+++|+|+...|.+.. .+-. ..+..+.++|.++++|||+|+||+ +.......... ...
T Consensus 55 ~e~a~~~lI~~A~~~I~I~~q~~~~~~---~p~~-----~~~~~l~~AL~~aa~RGV~Vrvll-~~~~~~~~~~~~~~~~ 125 (246)
T d1v0wa2 55 EESALRALVASAKGHIEISQQDLNATC---PPLP-----RYDIRLYDALAAKMAAGVKVRIVV-SDPANRGAVGSGGYSQ 125 (246)
T ss_dssp HHHHHHHHHHTCSSEEEEEESCSSCCT---TTSC-----SCCHHHHHHHHHHHHTTCEEEEEE-CCGGGCC------CCC
T ss_pred HHHHHHHHHHHCCCEEEEEEEEECCCC---CCCC-----CCCHHHHHHHHHHHHCCCCEEEEE-ECCCCCCCCCCCHHHH
T ss_conf 899999999723728999987524667---7656-----653799999999997599379998-3677542011230889
Q ss_pred CCCC---CHHHHHHH-------------HCCCCEEEECCCC--CC-CCCCCCCCCCCEEEECCCCCCCCCCCCEEEEECC
Q ss_conf 4566---18889987-------------2299399985889--88-8886445731069962887685466424899756
Q 004680 241 MRTH---DEDAFAYF-------------KHTKVICKLCPRL--HH-KFPTLFAHHQKTITVDARAQDSIFDREIMSFVGG 301 (737)
Q Consensus 241 ~~~~---~~~~~~~l-------------~~~~v~v~~~~r~--~~-~~~~~~~hHqK~vVVD~~~~~~~~~~~~vAfvGG 301 (737)
...- ..+...++ ...+..+...... +. .-....++|.|++|||++ ++||||
T Consensus 126 ~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lH~K~~VVD~~----------~~~VGS 195 (246)
T d1v0wa2 126 IKSLSEISDTLRNRLANITGGQQAAKTAMCSNLQLATFRSSPNGKWADGHPYAQHHKLVSVDSS----------TFYIGS 195 (246)
T ss_dssp CSCTHHHHHHHHHHHHHHHTSHHHHHHHHHHHEEEEECCSSSSSSCTTSCCCCBCCEEEEETTT----------EEEEES
T ss_pred HHHHHHHCCHHHHCCCCCCCHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEEEEECCC----------EEEECC
T ss_conf 9999981632642032344403332023234543024321567655677654441049998598----------999718
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCEEECHHH-HHHHH-HHHHHHHHCCC
Q ss_conf 33789776799975444578875557654333467656899999971101110508789-99999-99999622069
Q 004680 302 LDLCDGRYDTEKHSLFQTLNSESHCFDFYQINIAGASLHKGGPREPWHDVHACITGEAA-WDVLT-NFEQRWTKQCD 376 (737)
Q Consensus 302 idL~~~R~Dt~~H~l~~~l~~~~~~~d~~~~~~~g~~~~~~~~~~pWhDv~~~i~Gpaa-~dl~~-~F~~rW~~~~~ 376 (737)
.||... | |+|..+.|++|++ ..+.. .|...|+.+..
T Consensus 196 ~Nl~p~-~--------------------------------------~~E~g~vi~~p~~a~~l~~~~~~~~W~~s~~ 233 (246)
T d1v0wa2 196 KNLYPS-W--------------------------------------LQDFGYIVESPEAAKQLDAKLLDPQWKYSQE 233 (246)
T ss_dssp CCSSCC-C--------------------------------------SBCEEEEEECHHHHHHHHHHTHHHHHHHHGG
T ss_pred CCCCCC-H--------------------------------------HCCCCEEEECHHHHHHHHHHHHHHHHHHCCC
T ss_conf 858960-2--------------------------------------2017589948999999999999999876330
|
| >d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain from protein kinase c (beta) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.63 E-value=6.5e-16 Score=107.95 Aligned_cols=79 Identities=19% Similarity=0.259 Sum_probs=65.9
Q ss_pred CCCCCCCEEEEEEC----CEEEEECC---CCCCCEEEEEEEEECCCCC---EEEEEEEECCC---CCCCEEEEEEHHHHH
Q ss_conf 06889947999989----97876426---9999807679999937996---17999983588---843177996025451
Q 004680 7 FVNGKPTYVTIKID----NKKVAKTS---HEHDRVWNQTFQILCAHPA---DATITITLKTK---CSVLGKIHIQALQIL 73 (737)
Q Consensus 7 ~~~~~DPYv~i~l~----~~~v~rTk---~t~nP~WnE~F~i~~~~~~---~l~~~V~D~d~---d~~iG~~~ipl~~l~ 73 (737)
..|++||||+|.+. +....||+ +|.||+|||+|.|.+.... .|.|+|+|+|. |++||.+.|+++++.
T Consensus 32 ~~g~~DpYv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d~~~~d~~iG~~~i~l~~l~ 111 (132)
T d1a25a_ 32 PNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQ 111 (132)
T ss_dssp TTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEECCSSSCCEEEEEEEEEHHHHT
T ss_pred CCCCCCEEEEEEECCCCCCCCCCEEEEECCCCCCCCCEEEEEEEECCCCCCEEEEEEEECCCCCCCCEEEEEEEEHHHCC
T ss_conf 99896908999982678886640884165889984554999995764569787699780677888967699999689948
Q ss_pred CCCCCCCCEEECCC
Q ss_conf 01342241695525
Q 004680 74 NEASLISGFFPLEM 87 (737)
Q Consensus 74 ~~g~~~d~w~~L~~ 87 (737)
.+ .++.||+|.+
T Consensus 112 -~~-~~~~W~~L~~ 123 (132)
T d1a25a_ 112 -KA-GVDGWFKLLS 123 (132)
T ss_dssp -TC-CEEEEEECBC
T ss_pred -CC-CCCEEEECCC
T ss_conf -88-7882899978
|
| >d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.60 E-value=1.2e-15 Score=106.49 Aligned_cols=81 Identities=14% Similarity=0.205 Sum_probs=68.3
Q ss_pred CCCCCCCCEEEEEE--CCEEEEECC---CCCCCEEEEEEEEECCCC---C-EEEEEEEECCC---CCCCEEEEEEHHHHH
Q ss_conf 00688994799998--997876426---999980767999993799---6-17999983588---843177996025451
Q 004680 6 VFVNGKPTYVTIKI--DNKKVAKTS---HEHDRVWNQTFQILCAHP---A-DATITITLKTK---CSVLGKIHIQALQIL 73 (737)
Q Consensus 6 ~~~~~~DPYv~i~l--~~~~v~rTk---~t~nP~WnE~F~i~~~~~---~-~l~~~V~D~d~---d~~iG~~~ipl~~l~ 73 (737)
-..|++||||+|.+ ++....||+ ++.||+|||+|.|.+... . .|.|+|+|+|. +++||.+.|+|+++.
T Consensus 50 ~~~g~~dpyV~v~l~~~~~~~~kT~~~~~t~~P~wne~f~f~i~~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~L~~~~ 129 (143)
T d1rsya_ 50 DMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVD 129 (143)
T ss_dssp STTSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEECCCHHHHTTCEEEEEEEECCSSSCCEEEEEEEEEGGGCC
T ss_pred CCCCCCCEEEEEEECCCCCEEEEEEEECCCCCCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCCCCEEEEEEEECHHCC
T ss_conf 78999780799998589971688888656668312231699998531588469999998389888967999999820334
Q ss_pred CCCCCCCCEEECCC
Q ss_conf 01342241695525
Q 004680 74 NEASLISGFFPLEM 87 (737)
Q Consensus 74 ~~g~~~d~w~~L~~ 87 (737)
.++..+.|++|..
T Consensus 130 -~~~~~~~W~~L~s 142 (143)
T d1rsya_ 130 -FGHVTEEWRDLQS 142 (143)
T ss_dssp -CSSCEEEEEECBC
T ss_pred -CCCCCCCEEECCC
T ss_conf -9999702883888
|
| >d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Phospholipase C-beta-2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.56 E-value=4.1e-15 Score=103.33 Aligned_cols=94 Identities=19% Similarity=0.216 Sum_probs=73.8
Q ss_pred CCCCCCCEEEEEEC-----CEEEEECC-----CCCCCEEEEE-EEEE-CCCCC--EEEEEEEECCCCCCCEEEEEEHHHH
Q ss_conf 06889947999989-----97876426-----9999807679-9999-37996--1799998358884317799602545
Q 004680 7 FVNGKPTYVTIKID-----NKKVAKTS-----HEHDRVWNQT-FQIL-CAHPA--DATITITLKTKCSVLGKIHIQALQI 72 (737)
Q Consensus 7 ~~~~~DPYv~i~l~-----~~~v~rTk-----~t~nP~WnE~-F~i~-~~~~~--~l~~~V~D~d~d~~iG~~~ipl~~l 72 (737)
.-.++||||+|.+- ..+..+|+ |++||+|||+ |.+. +..+. .|.|+|+|+| |++||++.|||+.+
T Consensus 14 ~~~~~dPyV~V~l~g~~~D~~~~~~t~~~~~~n~~nP~wne~~~~~~~~~~~~l~~L~f~V~D~d-~~~lG~~~ipl~~l 92 (122)
T d2zkmx2 14 SERSVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAVMEEG-NKFLGHRIIPINAL 92 (122)
T ss_dssp CSSCCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEEEEETT-TEEEEEEEEEGGGB
T ss_pred CCCCCCCEEEEEEECCCCCCCCCEEEEEEEECCEECCEECCCEEEEEECCCCCCCEEEEEEECCC-CCEEEEEEEECCCC
T ss_conf 99999968999998767877752797887748736415806586988617774169999999999-99999999893217
Q ss_pred HCCCCCCCCEEECCCCCCCCCCCCCEEEEEECC
Q ss_conf 101342241695525899889996079998314
Q 004680 73 LNEASLISGFFPLEMENGKPNPDLRLRFMLWFK 105 (737)
Q Consensus 73 ~~~g~~~d~w~~L~~~~~k~~~~~~l~l~l~f~ 105 (737)
. .|. +|++|.+..|+++..+.|.+.++..
T Consensus 93 ~-~Gy---R~vpL~~~~g~~l~~~~L~v~i~~~ 121 (122)
T d2zkmx2 93 N-SGY---HHLCLHSESNMPLTMPALFIFLEMK 121 (122)
T ss_dssp C-CEE---EEEEEECTTCCEEEEEEEEEEEEEE
T ss_pred C-CCC---EEEECCCCCCCCCCCCEEEEEEEEE
T ss_conf 6-776---6999159992999886699999998
|
| >d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin XIII species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.55 E-value=1.2e-14 Score=100.58 Aligned_cols=81 Identities=16% Similarity=0.163 Sum_probs=68.1
Q ss_pred CCCCCCCCEEEEEEC---CEEEEECC---CCCCCEEEEEEEEECCCC---C-EEEEEEEECCC---CCCCEEEEEEHHHH
Q ss_conf 006889947999989---97876426---999980767999993799---6-17999983588---84317799602545
Q 004680 6 VFVNGKPTYVTIKID---NKKVAKTS---HEHDRVWNQTFQILCAHP---A-DATITITLKTK---CSVLGKIHIQALQI 72 (737)
Q Consensus 6 ~~~~~~DPYv~i~l~---~~~v~rTk---~t~nP~WnE~F~i~~~~~---~-~l~~~V~D~d~---d~~iG~~~ipl~~l 72 (737)
...|++||||++.+. +....||+ ++.||+|||+|.|.+... . .|.|+|+|.|. +++||++.|+|.++
T Consensus 39 ~~~g~~dpyVkv~l~~~~~~~~~kT~v~~~~~~P~wne~f~f~v~~~~l~~~~L~~~V~d~~~~~~~~~iG~~~i~L~~l 118 (138)
T d1wfma_ 39 NHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGT 118 (138)
T ss_dssp CCSSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTSSTTCEEEEEEEECCSSCTTSCSEEEEEESSSS
T ss_pred CCCCCCCCEEEEEECCCCCCCCEEEEEECCCCCCEEEEEEEEEEEEHHCCCEEEEEEEEEECCCCCCEEEEEEEEEHHHC
T ss_conf 98998383799998799885425303877789953813089986510166218999874205566314545999985773
Q ss_pred HCCCCCCCCEEECCC
Q ss_conf 101342241695525
Q 004680 73 LNEASLISGFFPLEM 87 (737)
Q Consensus 73 ~~~g~~~d~w~~L~~ 87 (737)
. .+...+.|++|..
T Consensus 119 ~-~~~~~~~W~~L~~ 132 (138)
T d1wfma_ 119 S-VPLGAAQWGELKT 132 (138)
T ss_dssp S-SCTTCCEEEECCC
T ss_pred C-CCCCCEEEEECCC
T ss_conf 4-8988659695888
|
| >d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.54 E-value=9.6e-15 Score=101.17 Aligned_cols=81 Identities=16% Similarity=0.162 Sum_probs=63.6
Q ss_pred CCCCCCCEEEEEEC--CEEEEECC---CCCCCEEEEEEEEECCCC---C-EEEEEEEECCC---CCCCEEEEEEHHHHH-
Q ss_conf 06889947999989--97876426---999980767999993799---6-17999983588---843177996025451-
Q 004680 7 FVNGKPTYVTIKID--NKKVAKTS---HEHDRVWNQTFQILCAHP---A-DATITITLKTK---CSVLGKIHIQALQIL- 73 (737)
Q Consensus 7 ~~~~~DPYv~i~l~--~~~v~rTk---~t~nP~WnE~F~i~~~~~---~-~l~~~V~D~d~---d~~iG~~~ipl~~l~- 73 (737)
..|++||||++.+. +.+..||+ ++.||+|||+|.|.+... . .|.|+|+|+|. |++||++.|++...+
T Consensus 35 ~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~~~~~~L~v~V~d~~~~~~d~~iG~~~i~~~~~l~ 114 (130)
T d1dqva1 35 SNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELA 114 (130)
T ss_dssp TTSCCCEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEEECCGGGGSSCCCEEEEEECCSSSCCCEEEEEECCCTTGGG
T ss_pred CCCCCCEEEEEEECCCCCCEEECEEECCCCCEEEEEEEEEEECHHHCCCCEEEEEEEECCCCCCCCEEEEEEECCHHHHH
T ss_conf 89975667899971678751866047687770652678898845771898699999876889998668999987615420
Q ss_pred CCCCCCCCEEECCC
Q ss_conf 01342241695525
Q 004680 74 NEASLISGFFPLEM 87 (737)
Q Consensus 74 ~~g~~~d~w~~L~~ 87 (737)
......+.|++|++
T Consensus 115 ~~~~~~~~W~~L~~ 128 (130)
T d1dqva1 115 EQPPDRPLWRDILE 128 (130)
T ss_dssp SSCSSCCCCEECBC
T ss_pred CCCCCCCEEEECCC
T ss_conf 27988868982216
|
| >d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Piccolo species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.54 E-value=1.4e-15 Score=106.06 Aligned_cols=82 Identities=15% Similarity=0.163 Sum_probs=66.2
Q ss_pred CCCCCCCEEEEEECC--E-----------EEEECC---CCCCCEEEEEEEEECCCC----C-EEEEEEEECCC---CCCC
Q ss_conf 068899479999899--7-----------876426---999980767999993799----6-17999983588---8431
Q 004680 7 FVNGKPTYVTIKIDN--K-----------KVAKTS---HEHDRVWNQTFQILCAHP----A-DATITITLKTK---CSVL 62 (737)
Q Consensus 7 ~~~~~DPYv~i~l~~--~-----------~v~rTk---~t~nP~WnE~F~i~~~~~----~-~l~~~V~D~d~---d~~i 62 (737)
..|++||||+|.+.. . ...||+ ++.||+|||+|.|..... . .|.|+|+|+|. +++|
T Consensus 35 ~~g~~DpyV~v~l~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~~~~~~~l 114 (142)
T d1rh8a_ 35 NNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFL 114 (142)
T ss_dssp SSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCHHHHTTCEEEEEEEEECSSSCEEEE
T ss_pred CCCCCCCCEEEEEECCCCCCCCCCCCCCCEEEECCCCCCCCCCEEEEEEEEEEECCCCCCCCEEEEEEEEECCCCCCEEE
T ss_conf 89997947899994676631000257883504346783888834678998752233346778799999970589998146
Q ss_pred EEEEEEHHHHHCCCCCCCCEEECCCCC
Q ss_conf 779960254510134224169552589
Q 004680 63 GKIHIQALQILNEASLISGFFPLEMEN 89 (737)
Q Consensus 63 G~~~ipl~~l~~~g~~~d~w~~L~~~~ 89 (737)
|++.|+|+++. .++..+.||+|....
T Consensus 115 G~~~i~L~~l~-~~~~~~~W~~L~~~~ 140 (142)
T d1rh8a_ 115 GEVLIDLSSTS-HLDNTPRWYPLKEQT 140 (142)
T ss_dssp EEEEEETTSCG-GGTTCCEEEECBCCC
T ss_pred EEEEEEHHHCC-CCCCCEEEEECCCCC
T ss_conf 89999867757-889860999793867
|
| >d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.46 E-value=2.5e-13 Score=92.93 Aligned_cols=81 Identities=19% Similarity=0.309 Sum_probs=62.9
Q ss_pred CCCCCCCEEEEEE--CCEEE--EECC---CCCCCEEEEEEEEECCCC---C-EEEEEEEECCC---CCCCEEEEEEHHHH
Q ss_conf 0688994799998--99787--6426---999980767999993799---6-17999983588---84317799602545
Q 004680 7 FVNGKPTYVTIKI--DNKKV--AKTS---HEHDRVWNQTFQILCAHP---A-DATITITLKTK---CSVLGKIHIQALQI 72 (737)
Q Consensus 7 ~~~~~DPYv~i~l--~~~~v--~rTk---~t~nP~WnE~F~i~~~~~---~-~l~~~V~D~d~---d~~iG~~~ipl~~l 72 (737)
..+++||||+|.+ ++.+. .||+ ++.||+|||+|.|.+... . .|.|+|+|+|. +++||++.|++...
T Consensus 42 ~~~~~dpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~F~v~~~~l~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~~ 121 (157)
T d1uowa_ 42 VGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNST 121 (157)
T ss_dssp TTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEECCSSSCCCEEEEEEEETTCC
T ss_pred CCCCCCEEEEEEEECCCCCCCCEECCCCCCCCCCCCCCEEEEEECHHHCCCCEEEEEECCCCCCCCCCEEEEEEEECCCC
T ss_conf 79997906999995388623450110236888963677699996089937638999981569888884669999806008
Q ss_pred ----------HC-CCCCCCCEEECCC
Q ss_conf ----------10-1342241695525
Q 004680 73 ----------LN-EASLISGFFPLEM 87 (737)
Q Consensus 73 ----------~~-~g~~~d~w~~L~~ 87 (737)
++ +.+.+..|++|..
T Consensus 122 ~~~~~hW~~~~~~~~~~v~~Wh~L~~ 147 (157)
T d1uowa_ 122 GAELRHWSDMLANPRRPIAQWHTLQV 147 (157)
T ss_dssp HHHHHHHHHHHHSTTCCEEEEEECBC
T ss_pred CHHHHHHHHHHHCCCCCEEEEEECCC
T ss_conf 81677899998589983007674899
|
| >d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.45 E-value=3.4e-13 Score=92.16 Aligned_cols=78 Identities=15% Similarity=0.146 Sum_probs=58.2
Q ss_pred CCCCCCCEEEEEE--CCEE--EEECC---CCCCCEEEEEEEEECCCCC----EEEEEEEECCC---CCCCEEEEEEHHHH
Q ss_conf 0688994799998--9978--76426---9999807679999937996----17999983588---84317799602545
Q 004680 7 FVNGKPTYVTIKI--DNKK--VAKTS---HEHDRVWNQTFQILCAHPA----DATITITLKTK---CSVLGKIHIQALQI 72 (737)
Q Consensus 7 ~~~~~DPYv~i~l--~~~~--v~rTk---~t~nP~WnE~F~i~~~~~~----~l~~~V~D~d~---d~~iG~~~ipl~~l 72 (737)
..+++||||+|.+ ++.. ..||+ ++.||+|||+|.|.+.... .|.|+|+|+|. +++||++.|++...
T Consensus 32 ~~~~~dpyvkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~~ 111 (138)
T d1w15a_ 32 VSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATAE 111 (138)
T ss_dssp ---CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCSSSSTTEEEEEEEEECCTTSCCEEEEEEEESTTCC
T ss_pred CCCCCCEEEEEEEECCCCCCCCCCCEEECCCCCCEECCEEEEEECHHHHCCCEEEEEEEECCCCCCCCEEEEEEECCHHC
T ss_conf 89985789999995774267643553188999973774799982379927558999998679988897889999866008
Q ss_pred HCCCCCCCCEEECCC
Q ss_conf 101342241695525
Q 004680 73 LNEASLISGFFPLEM 87 (737)
Q Consensus 73 ~~~g~~~d~w~~L~~ 87 (737)
. ...+.|++++.
T Consensus 112 ~---~~~~hW~~ll~ 123 (138)
T d1w15a_ 112 G---SGGGHWKEICD 123 (138)
T ss_dssp S---HHHHHHHHHHH
T ss_pred C---CHHHHHHHHHH
T ss_conf 8---26788999986
|
| >d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Regulating synaptic membrane exocytosis protein, rim2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.42 E-value=2.1e-13 Score=93.33 Aligned_cols=78 Identities=23% Similarity=0.296 Sum_probs=61.4
Q ss_pred CCCCCCCEEEEEE----CCEEEEECC---CCCCCEEEEEEEEE-CCCC---C-EEEEEEEECCC-----CCCCEEEEEEH
Q ss_conf 0688994799998----997876426---99998076799999-3799---6-17999983588-----84317799602
Q 004680 7 FVNGKPTYVTIKI----DNKKVAKTS---HEHDRVWNQTFQIL-CAHP---A-DATITITLKTK-----CSVLGKIHIQA 69 (737)
Q Consensus 7 ~~~~~DPYv~i~l----~~~~v~rTk---~t~nP~WnE~F~i~-~~~~---~-~l~~~V~D~d~-----d~~iG~~~ipl 69 (737)
..+++||||+|.+ .+....||+ ++.||+|||+|.|. +... . .|.|+|+|+|. +++||++.|++
T Consensus 31 ~~~~~dpyVkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~f~~~~~~~l~~~~L~i~v~d~~~~~~~~~~~iG~~~i~l 110 (125)
T d2bwqa1 31 DGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIEL 110 (125)
T ss_dssp TSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGGGGCEEEEEEEEC-------CEEEEEEEEEG
T ss_pred CCCCCCEEEEEEEECCCCCCCCCCCCEECCCCCCEECCEEEEEEECHHHCCCCEEEEEEEECCCCCCCCCEEEEEEEEEC
T ss_conf 99998978999996778886412167786899989853999960386662888799999988888899990699999980
Q ss_pred HHHHCCCCCCCCEEECC
Q ss_conf 54510134224169552
Q 004680 70 LQILNEASLISGFFPLE 86 (737)
Q Consensus 70 ~~l~~~g~~~d~w~~L~ 86 (737)
+++. ..+ ...||+|.
T Consensus 111 ~~~~-~~~-~~~Wy~L~ 125 (125)
T d2bwqa1 111 ETAL-LDD-EPHWYKLQ 125 (125)
T ss_dssp GGCC-CSS-CEEEEECC
T ss_pred HHCC-CCC-CCEEEECC
T ss_conf 5508-899-99989594
|
| >d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.41 E-value=7.7e-13 Score=90.10 Aligned_cols=79 Identities=16% Similarity=0.179 Sum_probs=60.4
Q ss_pred CCCCCCEEEEEE--CCEEEEECC---CCCCCEEEEEEEEE-CCCC---C-EEEEEEEECCC---CCCCEEEEEEHHHHHC
Q ss_conf 688994799998--997876426---99998076799999-3799---6-17999983588---8431779960254510
Q 004680 8 VNGKPTYVTIKI--DNKKVAKTS---HEHDRVWNQTFQIL-CAHP---A-DATITITLKTK---CSVLGKIHIQALQILN 74 (737)
Q Consensus 8 ~~~~DPYv~i~l--~~~~v~rTk---~t~nP~WnE~F~i~-~~~~---~-~l~~~V~D~d~---d~~iG~~~ipl~~l~~ 74 (737)
.+++||||++.+ ++....||+ ++.||+|||+|.|. +... . .|+|+|+|.|. +++||++.|+|+++..
T Consensus 41 ~~~~dpyV~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~L~~~V~d~d~~~~~~~iG~~~i~L~~~~~ 120 (138)
T d1ugka_ 41 SMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIEL 120 (138)
T ss_dssp TTBCEEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEECCCSTTGGGCEEEEEEEEECSSCCCCCCEEEEEECTTCCC
T ss_pred CCCCCEEEEEEECCCCCEEEECEEEECCCCCCEEEEEEEEEECHHHCCCCEEEEEEEECCCCCCCCEEEEEEEECCCCCC
T ss_conf 98653399999928999867071476778974456899961288995565589999989998889578999998341657
Q ss_pred CCCCCCCEEECC
Q ss_conf 134224169552
Q 004680 75 EASLISGFFPLE 86 (737)
Q Consensus 75 ~g~~~d~w~~L~ 86 (737)
....+-.|..+.
T Consensus 121 ~~~~~~~~~~~~ 132 (138)
T d1ugka_ 121 SEGKMLMNREII 132 (138)
T ss_dssp TTCCEEEEEECB
T ss_pred CCCEEEEEEECC
T ss_conf 787099996616
|
| >d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2b-domain of rabphilin species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.39 E-value=1e-12 Score=89.40 Aligned_cols=83 Identities=13% Similarity=0.100 Sum_probs=64.6
Q ss_pred CCCCCCCEEEEEEC----CEEEEECC---CCCCCEEEEEEEEECCCC--C--EEEEEEEECCC---CCCCEEEEEEHHHH
Q ss_conf 06889947999989----97876426---999980767999993799--6--17999983588---84317799602545
Q 004680 7 FVNGKPTYVTIKID----NKKVAKTS---HEHDRVWNQTFQILCAHP--A--DATITITLKTK---CSVLGKIHIQALQI 72 (737)
Q Consensus 7 ~~~~~DPYv~i~l~----~~~v~rTk---~t~nP~WnE~F~i~~~~~--~--~l~~~V~D~d~---d~~iG~~~ipl~~l 72 (737)
..+.+||||+|.+- .....||+ ++.||+|||+|.|.+... . .|.|+|+|.|. +++||++.|++..+
T Consensus 32 ~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~v~v~~~~~~~~~~~iG~~~i~l~~~ 111 (137)
T d2cm5a1 32 ANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAK 111 (137)
T ss_dssp TTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEECCSSSCCEEEEEEEEETTCC
T ss_pred CCCCCCEEEEEEEECCCCCCEEECCEEECCCCCCCCCEEEEEEEEHHHCCCCEEEEEEEECCCCCCCCEEEEEEECCCCC
T ss_conf 78776869999997688665663687571899985664999996878856129999766179998887999987473004
Q ss_pred HCCCCCCCCEEECCCCCCCC
Q ss_conf 10134224169552589988
Q 004680 73 LNEASLISGFFPLEMENGKP 92 (737)
Q Consensus 73 ~~~g~~~d~w~~L~~~~~k~ 92 (737)
. ...+.|++|++..+++
T Consensus 112 ~---~~~~~W~~l~~~~~~~ 128 (137)
T d2cm5a1 112 G---ERLKHWYECLKNKDKK 128 (137)
T ss_dssp H---HHHHHHHHHHHCTTCC
T ss_pred C---CCHHHHHHHHHCCCCE
T ss_conf 7---3110231576297986
|
| >d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.22 E-value=3.1e-13 Score=92.39 Aligned_cols=84 Identities=15% Similarity=0.130 Sum_probs=63.6
Q ss_pred CCCCCCCEEEEEECC--E--EEEECC---CCCCCEEEEEEEEECCCC---C-EEEEEEEECCC---CCCCEEEEEEHHHH
Q ss_conf 068899479999899--7--876426---999980767999993799---6-17999983588---84317799602545
Q 004680 7 FVNGKPTYVTIKIDN--K--KVAKTS---HEHDRVWNQTFQILCAHP---A-DATITITLKTK---CSVLGKIHIQALQI 72 (737)
Q Consensus 7 ~~~~~DPYv~i~l~~--~--~v~rTk---~t~nP~WnE~F~i~~~~~---~-~l~~~V~D~d~---d~~iG~~~ipl~~l 72 (737)
..+++||||+|.+.. . ...||+ ++.||+|||+|.|.+... . .|.|+|+|++. +++||++.|++..+
T Consensus 37 ~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~~~~~~~~l~v~v~d~~~~~~~~~iG~~~i~l~~~ 116 (145)
T d1dqva2 37 LTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAA 116 (145)
T ss_dssp SSSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCCCCSGGGGSCCCCCEEEECCSSSCCEEEEECCCSSCTT
T ss_pred CCCCCCCEEEEEECCCCCCCEEECCEEEECCCCCEECCEEEEEEEHHHCCCCEEEEEEEECCCCCCCCEEEEEEECCHHC
T ss_conf 89995840999990677663560678994887740330699998411368778999997569998896799999881671
Q ss_pred HCCCCCCCCEEECCCCCCCC
Q ss_conf 10134224169552589988
Q 004680 73 LNEASLISGFFPLEMENGKP 92 (737)
Q Consensus 73 ~~~g~~~d~w~~L~~~~~k~ 92 (737)
. ....+.|++|+...+++
T Consensus 117 ~--~~~~~~W~~l~~~p~~~ 134 (145)
T d1dqva2 117 D--PHGREHWAEMLANPRKP 134 (145)
T ss_dssp C--HHHHHHHHTSSSSSSSC
T ss_pred C--CHHHHHHHHHHHCCCCE
T ss_conf 9--53567799998689984
|
| >d2o8ra3 d.136.1.4 (A:318-505) Polyphosphate kinase, PPK {Porphyromonas gingivalis [TaxId: 837]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Phospholipase D/nuclease superfamily: Phospholipase D/nuclease family: Polyphosphate kinase C-terminal domain domain: Polyphosphate kinase, PPK species: Porphyromonas gingivalis [TaxId: 837]
Probab=97.01 E-value=0.0037 Score=33.84 Aligned_cols=137 Identities=10% Similarity=0.122 Sum_probs=85.2
Q ss_pred HHHHHHHHHCCC-----CEEEEEEEECCCCEEEEECCCHHHCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCC
Q ss_conf 999999997025-----489999941388347961881221000199999999999882994999880798871000144
Q 004680 164 WEDVYKAIEGAK-----HLIYIAGWSLNPKMVLVRDSQTEIAHARGVQLGELLKHKAEEGVAVRIMLWDDETSLPIIKNK 238 (737)
Q Consensus 164 ~~~i~~aI~~Ak-----~~I~I~~w~~~~~i~L~r~~~~~~~~~~~~~l~~lL~~kA~~GV~VriLvwD~~~s~~~~~~~ 238 (737)
|..+.+.+++|- .+|-|+-|... ....+.++|..||+.|-+|-+++ .-... +.
T Consensus 35 F~~vv~fl~eAA~DP~V~~Ik~TlYR~a----------------~~S~Ii~aLi~AA~nGK~Vtv~v-ELkAR---FD-- 92 (188)
T d2o8ra3 35 YDYVVRLLMEAAISPDVSEIRLTQYRVA----------------ENSSIISALEAAAQSGKKVSVFV-ELKAR---FD-- 92 (188)
T ss_dssp SHHHHHHHHHHHTCTTEEEEEEEESCCC----------------SCCHHHHHHHHHHHTTCEEEEEE-CCCSC---C---
T ss_pred CHHHHHHHHHHHCCCCCCEEEEEEEEEC----------------CCCHHHHHHHHHHHCCCEEEEEE-ECHHH---HH--
T ss_conf 3799999999856998228877898726----------------97469999999997698799998-31210---03--
Q ss_pred CCCCCCCHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 55456618889987229939998588988888644573106996288768546642489975633789776799975444
Q 004680 239 GVMRTHDEDAFAYFKHTKVICKLCPRLHHKFPTLFAHHQKTITVDARAQDSIFDREIMSFVGGLDLCDGRYDTEKHSLFQ 318 (737)
Q Consensus 239 g~~~~~~~~~~~~l~~~~v~v~~~~r~~~~~~~~~~hHqK~vVVD~~~~~~~~~~~~vAfvGGidL~~~R~Dt~~H~l~~ 318 (737)
...+-++.+.|+.+|++|.+-- ...--|-|+++|-.+..++ ...+-.+++|.=|....
T Consensus 93 ---Ee~NI~wa~~Le~aGv~ViyG~-------~glKvHaK~~lI~R~e~~g-~~~~~Y~hlgTGNyn~~----------- 150 (188)
T d2o8ra3 93 ---EENNLRLSERMRRSGIRIVYSM-------PGLKVHAKTALILYHTPAG-ERPQGIALLSTGNFNET----------- 150 (188)
T ss_dssp ------CHHHHHHHHHHTCEEEECC-------TTCCBCCCEEEEEECCCSS-SCCCEEEEEESSCSSCC-----------
T ss_pred ---HHHHHHHHHHHHHCCEEEEECC-------CCHHHCCEEEEEEEEECCC-CCCCCEEEECCCCCCCC-----------
T ss_conf ---8877777646776693996084-------6300022245899997276-56310799577881800-----------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCEEECH-HHHHHHHHHHH
Q ss_conf 5788755576543334676568999999711011105087-89999999999
Q 004680 319 TLNSESHCFDFYQINIAGASLHKGGPREPWHDVHACITGE-AAWDVLTNFEQ 369 (737)
Q Consensus 319 ~l~~~~~~~d~~~~~~~g~~~~~~~~~~pWhDv~~~i~Gp-aa~dl~~~F~~ 369 (737)
| ..-+-|.++.-..| ...|+...|..
T Consensus 151 ---T----------------------Ar~YtD~~l~Ta~~~i~~Dv~~~F~~ 177 (188)
T d2o8ra3 151 ---T----------------------ARIYSDTTLMTANTDIVHDVYRLFRI 177 (188)
T ss_dssp ---C----------------------SSCEEEEEEEECCHHHHHHHHHHHHH
T ss_pred ---C----------------------HHHEEEEEEECCCHHHHHHHHHHHHH
T ss_conf ---0----------------------00203202222788899999999998
|
| >d1xdpa3 d.136.1.4 (A:315-501) Polyphosphate kinase, PPK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Phospholipase D/nuclease superfamily: Phospholipase D/nuclease family: Polyphosphate kinase C-terminal domain domain: Polyphosphate kinase, PPK species: Escherichia coli [TaxId: 562]
Probab=96.07 E-value=0.015 Score=30.34 Aligned_cols=135 Identities=12% Similarity=0.163 Sum_probs=81.7
Q ss_pred HHHHHHHHHCCC-----CEEEEEEEECCCCEEEEECCCHHHCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCC
Q ss_conf 999999997025-----489999941388347961881221000199999999999882994999880798871000144
Q 004680 164 WEDVYKAIEGAK-----HLIYIAGWSLNPKMVLVRDSQTEIAHARGVQLGELLKHKAEEGVAVRIMLWDDETSLPIIKNK 238 (737)
Q Consensus 164 ~~~i~~aI~~Ak-----~~I~I~~w~~~~~i~L~r~~~~~~~~~~~~~l~~lL~~kA~~GV~VriLvwD~~~s~~~~~~~ 238 (737)
|+.+.+.+++|- .+|-|+-|... ....+.++|..||+.|-+|-+++ .-...+ ..
T Consensus 36 F~~vv~fl~eAA~DP~V~~Ik~TlYR~a----------------~~S~Ii~aLi~Aa~nGK~Vtv~v-ELkARF---DE- 94 (187)
T d1xdpa3 36 FEHVLELLRQASFDPSVLAIKINIYRVA----------------KDSRIIDSMIHAAHNGKKVTVVV-ELQARF---DE- 94 (187)
T ss_dssp THHHHHHHHHHHHCTTEEEEEEEESSCC----------------TTCHHHHHHHHHHHTTCEEEEEE-CTTCSS---TT-
T ss_pred HHHHHHHHHHHHCCCCCCEEEEEEEEEC----------------CCCCHHHHHHHHHHCCCEEEEEE-ECHHCC---CH-
T ss_conf 1689999999846998418878899716----------------98637999999997699899998-220000---48-
Q ss_pred CCCCCCCHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 55456618889987229939998588988888644573106996288768546642489975633789776799975444
Q 004680 239 GVMRTHDEDAFAYFKHTKVICKLCPRLHHKFPTLFAHHQKTITVDARAQDSIFDREIMSFVGGLDLCDGRYDTEKHSLFQ 318 (737)
Q Consensus 239 g~~~~~~~~~~~~l~~~~v~v~~~~r~~~~~~~~~~hHqK~vVVD~~~~~~~~~~~~vAfvGGidL~~~R~Dt~~H~l~~ 318 (737)
..+-++.+.|+.+|++|.+-. ...--|.|+++|-.+..+ .-+..+++|.=|....
T Consensus 95 ----e~NI~wa~~Le~aGv~ViyG~-------~glKvHaK~~lV~R~e~~---~~~~Y~higTGNyn~~----------- 149 (187)
T d1xdpa3 95 ----EANIHWAKRLTEAGVHVIFSA-------PGLKIHAKLFLISRKENG---EVVRYAHIGTGNFNEK----------- 149 (187)
T ss_dssp ----TTTTTTTHHHHHHTCEEEECC-------TTCEECCEEEEEEEEETT---EEEEEEEEESSCSCTT-----------
T ss_pred ----HHHHHHHHHHHHCCCEEECCC-------CCCEEEEEEEEEEEECCC---CEEEEEEECCCCCCCC-----------
T ss_conf ----888999999997799997374-------530102178999998289---5899999668784800-----------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCEEECH-HHHHHHHHHHH
Q ss_conf 5788755576543334676568999999711011105087-89999999999
Q 004680 319 TLNSESHCFDFYQINIAGASLHKGGPREPWHDVHACITGE-AAWDVLTNFEQ 369 (737)
Q Consensus 319 ~l~~~~~~~d~~~~~~~g~~~~~~~~~~pWhDv~~~i~Gp-aa~dl~~~F~~ 369 (737)
| ..-+-|+++.-..| ...|+...|..
T Consensus 150 ---T----------------------AriYtD~~l~T~~~~i~~D~~~~F~~ 176 (187)
T d1xdpa3 150 ---T----------------------ARLYTDYSLLTADARITNEVRRVFNF 176 (187)
T ss_dssp ---G----------------------GGTEEEEEEEECCHHHHHHHHHHHHH
T ss_pred ---C----------------------HHHEEEEEEECCCHHHHHHHHHHHHH
T ss_conf ---0----------------------00103302232798899999999997
|
| >d1xdpa3 d.136.1.4 (A:315-501) Polyphosphate kinase, PPK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Phospholipase D/nuclease superfamily: Phospholipase D/nuclease family: Polyphosphate kinase C-terminal domain domain: Polyphosphate kinase, PPK species: Escherichia coli [TaxId: 562]
Probab=96.06 E-value=0.03 Score=28.51 Aligned_cols=92 Identities=18% Similarity=0.320 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCHHH
Q ss_conf 99999999998189818999915999999999950125566788699899999999996599889767258730420343
Q 004680 477 EIALKVVSKIKAKERFAVYILIPMWPEGVPTSDPVQDILHWTRETMAMMYKLIGEAIQESGQVGHPRDFLNFFCLATREE 556 (737)
Q Consensus 477 ~la~~ia~a~~~g~~~~V~IvlP~~p~g~~~~~~~~~i~~~~~~t~~~~~~~~~~~L~~~gv~~~p~~yl~~~~l~~r~~ 556 (737)
.++.+|..|++.| -+|.+++-...-.+ +..+ +.| .+.|.++|+++ +|+
T Consensus 67 ~Ii~aLi~Aa~nG--K~Vtv~vELkARFD-Ee~N----I~w------------a~~Le~aGv~V-------iyG------ 114 (187)
T d1xdpa3 67 RIIDSMIHAAHNG--KKVTVVVELQARFD-EEAN----IHW------------AKRLTEAGVHV-------IFS------ 114 (187)
T ss_dssp HHHHHHHHHHHTT--CEEEEEECTTCSST-TTTT----TTT------------THHHHHHTCEE-------EEC------
T ss_pred CHHHHHHHHHHCC--CEEEEEEECHHCCC-HHHH----HHH------------HHHHHHCCCEE-------ECC------
T ss_conf 3799999999769--98999982200004-8888----999------------99999779999-------737------
Q ss_pred HCCCCCCCCCCCCCCCCHHHHHHHCCCCCEEEEEEEEEEEC-------EEEEEECCCCCCCCCCCCCCCCEEEEEECCC
Q ss_conf 20599635999999982567764203420466656999924-------2999705587736558999730279972399
Q 004680 557 KKSNGEFVPPYSPHPMTQYWNAQMHRRFMVYVHSKLMIVDD-------VYLLIGSANINQRSMDGQRDTEIAIGCYQLP 628 (737)
Q Consensus 557 ~~~~~~~~p~~~p~~~~~~~~~~~~~~~~iyvHSK~mIVDD-------~~~iIGSANiN~RSm~g~~DsEi~v~i~~~~ 628 (737)
. + ..-||||+++|-- +|+-||+-|.|...-..- |.+++...+++
T Consensus 115 ------~-~-------------------glKvHaK~~lV~R~e~~~~~~Y~higTGNyn~~TAriY--tD~~l~T~~~~ 165 (187)
T d1xdpa3 115 ------A-P-------------------GLKIHAKLFLISRKENGEVVRYAHIGTGNFNEKTARLY--TDYSLLTADAR 165 (187)
T ss_dssp ------C-T-------------------TCEECCEEEEEEEEETTEEEEEEEEESSCSCTTGGGTE--EEEEEEECCHH
T ss_pred ------C-C-------------------CCEEEEEEEEEEEECCCCEEEEEEECCCCCCCCCHHHE--EEEEEECCCHH
T ss_conf ------4-5-------------------30102178999998289589999966878480000010--33022327988
|
| >d1xdpa4 d.136.1.4 (A:502-688) Polyphosphate kinase, PPK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Phospholipase D/nuclease superfamily: Phospholipase D/nuclease family: Polyphosphate kinase C-terminal domain domain: Polyphosphate kinase, PPK species: Escherichia coli [TaxId: 562]
Probab=95.54 E-value=0.041 Score=27.75 Aligned_cols=24 Identities=21% Similarity=0.307 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEECC
Q ss_conf 9999999999988299499988079
Q 004680 204 GVQLGELLKHKAEEGVAVRIMLWDD 228 (737)
Q Consensus 204 ~~~l~~lL~~kA~~GV~VriLvwD~ 228 (737)
+..+.++|-+|++.||+|.++| .+
T Consensus 41 D~~~I~~Ly~AS~aGV~I~LiV-RG 64 (187)
T d1xdpa4 41 DKGLVDRLYAASSSGVPVNLLV-RG 64 (187)
T ss_dssp CHHHHHHHHHHHHTTCCEEEEE-SS
T ss_pred CHHHHHHHHHHHCCCCEEEEEE-CC
T ss_conf 9899999999976898589998-46
|
| >d2o8ra3 d.136.1.4 (A:318-505) Polyphosphate kinase, PPK {Porphyromonas gingivalis [TaxId: 837]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Phospholipase D/nuclease superfamily: Phospholipase D/nuclease family: Polyphosphate kinase C-terminal domain domain: Polyphosphate kinase, PPK species: Porphyromonas gingivalis [TaxId: 837]
Probab=95.46 E-value=0.054 Score=27.08 Aligned_cols=92 Identities=14% Similarity=0.172 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCHHH
Q ss_conf 99999999998189818999915999999999950125566788699899999999996599889767258730420343
Q 004680 477 EIALKVVSKIKAKERFAVYILIPMWPEGVPTSDPVQDILHWTRETMAMMYKLIGEAIQESGQVGHPRDFLNFFCLATREE 556 (737)
Q Consensus 477 ~la~~ia~a~~~g~~~~V~IvlP~~p~g~~~~~~~~~i~~~~~~t~~~~~~~~~~~L~~~gv~~~p~~yl~~~~l~~r~~ 556 (737)
.++.+|..|++.| -+|.+++-...-.+ +..+ + .+.+.|.++|+++ +|+
T Consensus 66 ~Ii~aLi~AA~nG--K~Vtv~vELkARFD-Ee~N----I------------~wa~~Le~aGv~V-------iyG------ 113 (188)
T d2o8ra3 66 SIISALEAAAQSG--KKVSVFVELKARFD-EENN----L------------RLSERMRRSGIRI-------VYS------ 113 (188)
T ss_dssp HHHHHHHHHHHTT--CEEEEEECCCSCC-----C----H------------HHHHHHHHHTCEE-------EEC------
T ss_pred HHHHHHHHHHHCC--CEEEEEEECHHHHH-HHHH----H------------HHHHHHHHCCEEE-------EEC------
T ss_conf 6999999999769--87999983121003-8877----7------------7764677669399-------608------
Q ss_pred HCCCCCCCCCCCCCCCCHHHHHHHCCCCCEEEEEEEEEEE---------CEEEEEECCCCCCCCCCCCCCCCEEEEEECC
Q ss_conf 2059963599999998256776420342046665699992---------4299970558773655899973027997239
Q 004680 557 KKSNGEFVPPYSPHPMTQYWNAQMHRRFMVYVHSKLMIVD---------DVYLLIGSANINQRSMDGQRDTEIAIGCYQL 627 (737)
Q Consensus 557 ~~~~~~~~p~~~p~~~~~~~~~~~~~~~~iyvHSK~mIVD---------D~~~iIGSANiN~RSm~g~~DsEi~v~i~~~ 627 (737)
. + ..-+|||+++|- .+|+-+|+-|.|..--..- |.+++...++
T Consensus 114 ------~-~-------------------glKvHaK~~lI~R~e~~g~~~~~Y~hlgTGNyn~~TAr~Y--tD~~l~Ta~~ 165 (188)
T d2o8ra3 114 ------M-P-------------------GLKVHAKTALILYHTPAGERPQGIALLSTGNFNETTARIY--SDTTLMTANT 165 (188)
T ss_dssp ------C-T-------------------TCCBCCCEEEEEECCCSSSCCCEEEEEESSCSSCCCSSCE--EEEEEEECCH
T ss_pred ------C-C-------------------CHHHCCEEEEEEEEECCCCCCCCEEEECCCCCCCCCHHHE--EEEEEECCCH
T ss_conf ------4-6-------------------3000222458999972765631079957788180000020--3202222788
Q ss_pred C
Q ss_conf 9
Q 004680 628 P 628 (737)
Q Consensus 628 ~ 628 (737)
+
T Consensus 166 ~ 166 (188)
T d2o8ra3 166 D 166 (188)
T ss_dssp H
T ss_pred H
T ss_conf 8
|
| >d2o8ra4 d.136.1.4 (A:506-691) Polyphosphate kinase, PPK {Porphyromonas gingivalis [TaxId: 837]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Phospholipase D/nuclease superfamily: Phospholipase D/nuclease family: Polyphosphate kinase C-terminal domain domain: Polyphosphate kinase, PPK species: Porphyromonas gingivalis [TaxId: 837]
Probab=93.15 E-value=0.18 Score=24.03 Aligned_cols=133 Identities=10% Similarity=0.162 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHCCCC----EEEEEEEECCCCEEEEECCCHHHCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCC
Q ss_conf 2489999999970254----899999413883479618812210001999999999998829949998807988710001
Q 004680 161 GKLWEDVYKAIEGAKH----LIYIAGWSLNPKMVLVRDSQTEIAHARGVQLGELLKHKAEEGVAVRIMLWDDETSLPIIK 236 (737)
Q Consensus 161 ~~~~~~i~~aI~~Ak~----~I~I~~w~~~~~i~L~r~~~~~~~~~~~~~l~~lL~~kA~~GV~VriLvwD~~~s~~~~~ 236 (737)
....+-+-..|..|+. .|.+-.=++ .+..+.++|-+|+++||+|.++| .+.-+. .
T Consensus 11 ~~l~~~I~~Ei~~a~~G~~~~I~~KmNsL-----------------~D~~iI~~Ly~AS~aGV~I~LiV-RGic~L--~- 69 (186)
T d2o8ra4 11 EAITNLIEREIENVKRGKRGYMLLKMNGL-----------------QDKNVITQLYRASEAGVEIDLIV-RGICCL--V- 69 (186)
T ss_dssp HHHHHHHHHHHHHHHTTCCCEEEEEESCB-----------------CCHHHHHHHHHHHHTTCEEEEEE-SSCBCS--C-
T ss_pred HHHHHHHHHHHHHHHCCCCCEEEEEECCC-----------------CCHHHHHHHHHHHCCCCEEEEEE-CCHHEE--C-
T ss_conf 99999999999998779986899860346-----------------59899999999851797289998-755410--5-
Q ss_pred CCCCCCCCCHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 44554566188899872299399985889888886445731069962887685466424899756337897767999754
Q 004680 237 NKGVMRTHDEDAFAYFKHTKVICKLCPRLHHKFPTLFAHHQKTITVDARAQDSIFDREIMSFVGGLDLCDGRYDTEKHSL 316 (737)
Q Consensus 237 ~~g~~~~~~~~~~~~l~~~~v~v~~~~r~~~~~~~~~~hHqK~vVVD~~~~~~~~~~~~vAfvGGidL~~~R~Dt~~H~l 316 (737)
.|+-. ..+++|.-.- . -+--|-++...-+.+.. ..|+|+.|+-....|-
T Consensus 70 -pgv~g-----------senI~V~Siv------g-RfLEHsRiy~F~n~g~~-------~~yigSAD~M~RNLdr----- 118 (186)
T d2o8ra4 70 -PDMPQ-----------SRNIRVTRLV------D-MYLEHSRIWCFHNGGKE-------EVFISSADWMKRNLYN----- 118 (186)
T ss_dssp -CSSGG-----------GTTEEEEECC------S-SSEECCCEEEECGGGSC-------EEEEESCCBCHHHHHT-----
T ss_pred -CCCCC-----------CCCEEEEEEE------C-CCCCCCEEEEEECCCCE-------EEEEECCCHHHHHHHC-----
T ss_conf -89988-----------7847999940------4-56536569999749954-------8998462110354523-----
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCEEECHHH-HHHHHHHHHHHHHCCC
Q ss_conf 44578875557654333467656899999971101110508789-9999999999622069
Q 004680 317 FQTLNSESHCFDFYQINIAGASLHKGGPREPWHDVHACITGEAA-WDVLTNFEQRWTKQCD 376 (737)
Q Consensus 317 ~~~l~~~~~~~d~~~~~~~g~~~~~~~~~~pWhDv~~~i~Gpaa-~dl~~~F~~rW~~~~~ 376 (737)
-..+.+-|..|.. ..+...|...|..-..
T Consensus 119 -------------------------------RVEv~~PI~d~~~k~~l~~iL~~~l~Dn~k 148 (186)
T d2o8ra4 119 -------------------------------RIETACPVLDPTLRREIIDILEIQLRDNIK 148 (186)
T ss_dssp -------------------------------SBCEEEECCSHHHHHHHHHHHHHHHHCCSS
T ss_pred -------------------------------CEEEEEEECCHHHHHHHHHHHHHHCCCCHH
T ss_conf -------------------------------646999957989999999999988052476
|
| >d1jy1a2 d.136.1.3 (A:351-608) Tyrosyl-DNA phosphodiesterase TDP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Phospholipase D/nuclease superfamily: Phospholipase D/nuclease family: Tyrosyl-DNA phosphodiesterase TDP1 domain: Tyrosyl-DNA phosphodiesterase TDP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.49 E-value=0.31 Score=22.62 Aligned_cols=43 Identities=21% Similarity=0.251 Sum_probs=31.4
Q ss_pred CCCEEEEEEEEEEEC------EEEEEECCCCCCCCCC---------CCCCCCEEEEEE
Q ss_conf 420466656999924------2999705587736558---------999730279972
Q 004680 583 RFMVYVHSKLMIVDD------VYLLIGSANINQRSMD---------GQRDTEIAIGCY 625 (737)
Q Consensus 583 ~~~iyvHSK~mIVDD------~~~iIGSANiN~RSm~---------g~~DsEi~v~i~ 625 (737)
|....-|.|.+|... .|++||||||..-.+- --+..|++|.+.
T Consensus 137 R~~a~PHiKty~r~~~d~~~i~W~lltSaNLSkaAWG~~~~~~~~l~I~nyElGVL~~ 194 (258)
T d1jy1a2 137 RSNAMPHIKTYMRPSPDFSKIAWFLVTSANLSKAAWGALEKNGTQLMIRSYELGVLFL 194 (258)
T ss_dssp CTTSCBCCEEEEEECTTSSEEEEEEEESCCBSHHHHCEEETTTTEEEECSBEEEEEEC
T ss_pred CCCCCCEEEEEEEECCCCCEEEEEEECCCCCCHHHHCCCCCCCCEEEEECCEEEEEEC
T ss_conf 8788880588998779887350899724537978867535789737761204689971
|
| >d1q32a2 d.136.1.3 (A:302-538) Tyrosyl-DNA phosphodiesterase TDP1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Phospholipase D/nuclease superfamily: Phospholipase D/nuclease family: Tyrosyl-DNA phosphodiesterase TDP1 domain: Tyrosyl-DNA phosphodiesterase TDP1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=81.37 E-value=0.71 Score=20.54 Aligned_cols=41 Identities=24% Similarity=0.267 Sum_probs=28.1
Q ss_pred CEEEEEEEEEE--EC--------------EEEEEECCCCCCCCC----CCCCCCCEEEEEE
Q ss_conf 04666569999--24--------------299970558773655----8999730279972
Q 004680 585 MVYVHSKLMIV--DD--------------VYLLIGSANINQRSM----DGQRDTEIAIGCY 625 (737)
Q Consensus 585 ~iyvHSK~mIV--DD--------------~~~iIGSANiN~RSm----~g~~DsEi~v~i~ 625 (737)
...-|.|.++- ++ .|+++|||||..-.+ ..-+..|++|++.
T Consensus 127 ~a~pHiKty~r~~~~~~~~~~~~~~~~~i~W~lltSANLSkaAWG~~~~~irnyElGVL~~ 187 (237)
T d1q32a2 127 TTPAHSKFYMHCATNSAGPCDASQVFKELEWCLYTSANLSQTAWGTVSRKPRNYEAGVLYH 187 (237)
T ss_dssp TCCBCCEEEEEEEECC-------CTTSEESEEEEESCCBSHHHHCCSSSCCSSBEEEEEEE
T ss_pred CCCCCEEEEEEEECCCCCCCCCCCCCCEEEEEEECCCCCCHHHHCCCCCCCCCEEEEEEEC
T ss_conf 6578158899850477655555566546437998135379768545003666326579964
|